Citrus Sinensis ID: 016986

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEAFLVLVA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHccccccccccccccccHHHHHHHHHHHHHHccccccEEEcccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcHHccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccHHHEEEHHHHHHHHHHHcccccccccHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccHccccHEEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHccccHHHHHHHHHHHHHHHHHcHcEEEEEcHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mwgrqreasmmykrtssrdrsstfdveeTTALVQNgteventnpswklsFPHVLVATLSSFLFGYhlgvvneplesisldlgfngntLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVvgtgmglgPTVAALYVTevsppfvrgtyGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCaesphwlykkgrTAEAEAEFEKLLGGSHVKSSLAelskldrgddgdivKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEAFLVLVA
Flexible Loop (DISEMBL)
mwgrqreasmmykrtssrdrsstfdvEETTALvqngteventnpsWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKllggshvksslaelskldrgddgDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEAFLVLVA
Low Complexity Region (SEG)
MWGRQREASMMYKrtssrdrsstFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEAFLVLVA
Disordered region (IsUnstruct)
******************************************NPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLL*****************GDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEAFLVLV*
Disordered Region (DISOPRED)
***********************************************LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSS********************LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEAFLVLVA
Disordered Region (DISEMBL)
**************************EETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEAFLVLVA
Disordered Region (DISPRO)
*****************************************TNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEAFLVLVA
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEAFLVLVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	379	2.2.26 [Sep-21-2011]
Q9FYG3	493	Probable plastidic glucos	yes	no	0.952	0.732	0.728	1e-155
Q2V4B9	495	Probable plastidic glucos	no	no	0.944	0.723	0.680	1e-140
Q0WVE9	524	Probable plastidic glucos	no	no	0.839	0.606	0.437	4e-74
Q56ZZ7	546	Plastidic glucose transpo	no	no	0.912	0.633	0.398	7e-68
P87110	557	Myo-inositol transporter	yes	no	0.865	0.588	0.306	8e-35
Q9ZQP6	580	Probable inositol transpo	no	no	0.820	0.536	0.310	2e-34
Q93YP9	488	Sugar transporter ERD6-li	no	no	0.783	0.608	0.323	7e-34
P46333	461	Probable metabolite trans	yes	no	0.767	0.631	0.327	7e-34
Q9FRL3	487	Sugar transporter ERD6-li	no	no	0.823	0.640	0.312	1e-33
C0SPB2	457	Putative metabolite trans	no	no	0.791	0.656	0.318	3e-33

>sp|Q9FYG3|PLST2_ARATH Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1

 Score =  548 bits (1413), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 266/365 (72%), Positives = 308/365 (84%), Gaps = 4/365 (1%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNG--TEVENTNPSWKLSFPHVLVATL 58
           M G QRE S MYKRTSSRD S   DVE+++ L++N    E+E TNPSWK S PHVLVAT+
Sbjct: 1   MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query: 59  SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
           SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS  SG +ADG GRR
Sbjct: 61  SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query: 119 RAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY 178
           RAFQ+CALPMI+GA +S  + +L  MLLGRF+VGTGMGLGP VAALYVTEVSP FVRGTY
Sbjct: 121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query: 179 GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
           G+FIQIATCLGLM +L IGIPV  I GWWR+CFW+S +PAA+L L M  CAESP WL+K+
Sbjct: 181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240

Query: 239 GRTAEAEAEFEKLLGGSHVKSSLAELSK--LDRGDDGDIVKFEELLYGRHFRVVFIGSTL 296
           G+ AEAEAEFE+LLGGSHVK+++AEL K  LD+ D+ D+V   ELLYGRH RVVFIGSTL
Sbjct: 241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTL 300

Query: 297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW 356
           FALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK LL W
Sbjct: 301 FALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLW 360

Query: 357 SFFSM 361
           SF  M
Sbjct: 361 SFIGM 365

May be involved in the efflux of glucose towards the cytosol.
Arabidopsis thaliana (taxid: 3702)

>sp|Q2V4B9|PLST3_ARATH Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2

 Score =  498 bits (1282), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/363 (68%), Positives = 288/363 (79%), Gaps = 5/363 (1%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           M GR  +     KR  S++  S  D  ET   +  GT  +  NPSWK S PHVLVA+L+S
Sbjct: 11  MRGRHID-----KRVPSKEFLSALDKAETAVRLPTGTGKDCGNPSWKRSLPHVLVASLTS 65

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
            LFGYHLGVVNE LESIS+DLGF+GNT+AEGLVVS CLGGAFIGS  SG +ADGVGRRRA
Sbjct: 66  LLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRA 125

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQL ALPMI+GAS+SA+T +L+GMLLGRF+VG GMG+GP+V ALYVTEVSP +VRGTYG+
Sbjct: 126 FQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGS 185

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
             QIATC+GL+GSL  GIP K+  GWWRICFW+S VPAA+L + M  C ESP WL+K+GR
Sbjct: 186 STQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGR 245

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
            AEAEA FEKLLGGS+VK+++AEL K DRGDD D  K  ELL+GR FRVVFIGSTLFALQ
Sbjct: 246 AAEAEAVFEKLLGGSYVKAAMAELVKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFALQ 305

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINA+FYFSS+VFK AG+ S  AN+ VG+ NLLGS VA+VLMDKLGRK LL  SF  
Sbjct: 306 QLSGINAVFYFSSTVFKKAGVPSASANICVGVCNLLGSTVAVVLMDKLGRKVLLIGSFAG 365

Query: 361 MVI 363
           M +
Sbjct: 366 MAV 368

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WVE9|PLST1_ARATH Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2

 Score =  278 bits (712), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 140/320 (43%), Positives = 211/320 (65%), Gaps = 2/320 (0%)

Query: 46  WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGS 105
           W  +FPHV VA++++FLFGYH+GV+N P+ SI+ +LGF GN++ EGLVVS+ + GAFIGS
Sbjct: 76  WLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVSIFIAGAFIGS 135

Query: 106 TLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY 165
            ++G + D  G RR FQ+  +P+I+GA +SA   +L  +L GRF+VG G+G+   +  +Y
Sbjct: 136 IVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILCGRFLVGLGIGVNTVLVPIY 195

Query: 166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225
           ++EV+P   RG+ G   QI TCLG++ SLL+GIP ++   WWR   +V+ +P  +L L M
Sbjct: 196 ISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLYVASMPGFLLALGM 255

Query: 226 VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI-VKFEELLYG 284
            F  ESP WL K GR  +A+     + GGS V+ ++ +   + +    ++  ++ ELL  
Sbjct: 256 QFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQSVMKNSGSNLNSRWLELLDK 315

Query: 285 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGL-ANVFVGIANLLGSVVAMV 343
            H RV FIG +LF LQQ +GIN + YFSS  F++ G++SG  A+++VG+ N  G++ A  
Sbjct: 316 PHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGITSGAQASLYVGVTNFAGALCASY 375

Query: 344 LMDKLGRKALLQWSFFSMVI 363
           L+DK GRK LL  S+  M +
Sbjct: 376 LIDKQGRKKLLIGSYLGMAV 395

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q56ZZ7|PLST4_ARATH Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2

 Score =  258 bits (658), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 141/354 (39%), Positives = 210/354 (59%), Gaps = 8/354 (2%)

Query: 9   SMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLG 68
           S +  R+     SS  D EE   L   G              P V VA L + LFGYHLG
Sbjct: 72  SSVKARSVRAQASSDGDEEEAIPLRSEGKSSGTV-------LPFVGVACLGAILFGYHLG 124

Query: 69  VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128
           VVN  LE ++ DLG   NT+ +G +VS  L GA +GS   G +AD  GR R FQL A+P+
Sbjct: 125 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRTFQLDAIPL 184

Query: 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL 188
            IGA + AT +++  M++GR + G G+G+   +  LY++E+SP  +RG  G+  Q+  C+
Sbjct: 185 AIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICI 244

Query: 189 GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEF 248
           G++ +L+ G+P+     WWR  F V+++P+ +L + M F  ESP WL ++G+ +EAE   
Sbjct: 245 GILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGKVSEAEKAI 304

Query: 249 EKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAI 308
           + L G   V   + +LS   +G       + +L   R+++VV +G+ LF  QQL+GINA+
Sbjct: 305 KTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAV 364

Query: 309 FYFSSSVFKSAGLSSGL-ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM 361
            Y+S+SVF+SAG+ S + A+  VG +N+ G+ VA  LMDK+GRK+LL  SF  M
Sbjct: 365 VYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFGGM 418

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|P87110|ITR2_SCHPO Myo-inositol transporter 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=itr2 PE=2 SV=1

 Score =  148 bits (373), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 181/365 (49%), Gaps = 37/365 (10%)

Query: 18  RDRSSTFDVEETTALVQNGTEVENTNPS-----------WKLSFPHVLVATLSSFLFGYH 66
           R+  S  + EE  A      EV + N             W LS     VA +S  LFGY 
Sbjct: 43  REIPSLPNEEEANATDPQANEVADENGEGFEAEKISSWIWVLS----AVAGISGLLFGYD 98

Query: 67  LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126
            GV++  L  +  DLG   ++  + L+ S     A I +T SGW+AD VGR+R   LCA 
Sbjct: 99  TGVISGALAVLGSDLGHVLSSGQKELITSATSFAALISATTSGWLADWVGRKRLL-LCAD 157

Query: 127 PM-IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIA 185
            + +IG+ I A +RN+  M++GRF+VG G+GL   +  +Y+TE++P  +RG       + 
Sbjct: 158 AIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYITELAPARLRGRLVIIYVVF 217

Query: 186 TCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAE 245
              G + +  +    + +   WRI F +   PA    +++ +  ESP +L +     +  
Sbjct: 218 ITGGQLIAYSLNAAFEHVHQGWRIMFGIGAAPALGQLISLFWTPESPRYLLRHNHVEKV- 276

Query: 246 AEFEKLLGGSHVKSSLAELS-KLDRGDDGDIVKFEELLYGRHF--------------RVV 290
               K+L   H ++  AE++ K+    +G  V F E    +HF              R +
Sbjct: 277 ---YKILSRIHPEAKPAEIAYKVSLIQEGVKVDFPEGNKFQHFFHSLKVLFTVPSNRRSL 333

Query: 291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLA-NVFVGIANLLGSVVAMVLMDKLG 349
           FIG  L   QQ SG NAI YFS+ +F+S G  + ++ ++ VG  N + ++VA + +D++G
Sbjct: 334 FIGCFLQWFQQFSGTNAIQYFSAIIFQSVGFKNSISVSIVVGATNFVFTIVAFMFIDRIG 393

Query: 350 RKALL 354
           R+ +L
Sbjct: 394 RRRIL 398

Transporter for myo-inositol.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9ZQP6|INT3_ARATH Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1

 Score =  147 bits (370), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 169/335 (50%), Gaps = 24/335 (7%)

Query: 51  PHVLVATLSS----FLFGYHLGVVNEPLESISLDLG-FNGNTLAEGLVVSMCLGGAFIGS 105
           P+++   LS+     LFGY+ GV+   L  I  + G  +  T  + ++VSM + GA +G+
Sbjct: 24  PYIMRLALSAGIGGLLFGYNTGVIAGALLYIKEEFGEVDNKTWLQEIIVSMTVAGAIVGA 83

Query: 106 TLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY 165
            + GW  D  GRR +  +  +  ++GA +         ++LGR +VG G+G+    + LY
Sbjct: 84  AIGGWYNDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGMASMTSPLY 143

Query: 166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225
           ++E+SP  +RG   +   +    G   S LI +      G WR    VS +PA I    M
Sbjct: 144 ISEMSPARIRGALVSTNGLLITGGQFLSYLINLAFVHTPGTWRWMLGVSAIPAIIQFCLM 203

Query: 226 VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGD--DGDIV--KFEEL 281
           +   ESP WLY+  R AE+    E++     V++ +A L +  R +  D DI+   F + 
Sbjct: 204 LTLPESPRWLYRNDRKAESRDILERIYPAEMVEAEIAALKESVRAETADEDIIGHTFSDK 263

Query: 282 LYG-------RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS-----GLANVF 329
           L G       RH      G T+   QQ  GIN + Y+S ++ + AG +S      LA + 
Sbjct: 264 LRGALSNPVVRHGLAA--GITVQVAQQFVGINTVMYYSPTILQFAGYASNKTAMALALIT 321

Query: 330 VGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVIC 364
            G+ N +GSVV+M+ +D+ GR+ L+  S F ++ C
Sbjct: 322 SGL-NAVGSVVSMMFVDRYGRRKLMIISMFGIITC 355

Plasma membrane inositol-proton symporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93YP9|ERDL4_ARATH Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450 PE=2 SV=1

 Score =  145 bits (365), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 171/321 (53%), Gaps = 24/321 (7%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVV-SMCLGGAFIGSTLSGWI 111
           VL+  L    FG+  G  +    +I+ DLG    T++E  V  S+   GA +G+  SG I
Sbjct: 53  VLIVALGPIQFGFTCGYSSPTQAAITKDLGL---TVSEYSVFGSLSNVGAMVGAIASGQI 109

Query: 112 ADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP 171
           A+ VGR+ +  + A+P IIG    +  ++   + +GR + G G+G+      +Y+ E++P
Sbjct: 110 AEYVGRKGSLMIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAP 169

Query: 172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES 231
             +RG  G+  Q++  +G+M + L+G+ V      WRI   + ++P  +L   + F  ES
Sbjct: 170 QTMRGALGSVNQLSVTIGIMLAYLLGLFVP-----WRILAVLGVLPCTLLIPGLFFIPES 224

Query: 232 PHWLYKKGRTAEAEAEFEKLLG--------GSHVKSSLAELSKLDRGDDGDIVKFEELLY 283
           P WL K G T + E   + L G         + +K S+A  SK         V+F +L  
Sbjct: 225 PRWLAKMGLTDDFETSLQVLRGFETDITVEVNEIKRSVASSSKRSA------VRFVDLKR 278

Query: 284 GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL-SSGLANVFVGIANLLGSVVAM 342
            R++  + +G  L ALQQL GIN + ++SS++F+SAG+ SS +A   VG+  ++ + +A 
Sbjct: 279 RRYYFPLMVGIGLLALQQLGGINGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIAT 338

Query: 343 VLMDKLGRKALLQWSFFSMVI 363
            L+DK GR+ LL  S   M I
Sbjct: 339 WLVDKAGRRLLLMISSIGMTI 359

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3

 Score =  144 bits (364), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 165/305 (54%), Gaps = 14/305 (4%)

Query: 58  LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR 117
           L   L+GY  GV++  L  I+ D+     TL EGLVVSM L GA  GS LSG  +D  GR
Sbjct: 16  LGGLLYGYDTGVISGALLFINNDIPLT--TLTEGLVVSMLLLGAIFGSALSGTCSDRWGR 73

Query: 118 RRAFQLCALPMIIGASISATTRNLIGMLLG-RFVVGTGMGLGPTVAALYVTEVSPPFVRG 176
           R+   + ++  IIGA   A ++  IGML+  R ++G  +G    +  +Y++E++P  +RG
Sbjct: 74  RKVVFVLSIIFIIGALACAFSQT-IGMLIASRVILGLAVGGSTALVPVYLSEMAPTKIRG 132

Query: 177 TYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLY 236
           T G    +    G++ + ++          WR    ++ VPA +L + + F  ESP WL 
Sbjct: 133 TLGTMNNLMIVTGILLAYIVNYLFTPFEA-WRWMVGLAAVPAVLLLIGIAFMPESPRWLV 191

Query: 237 KKGRTAEAEAEFEKLLGGSHVKSSLA-ELSKLDRGDDGDIVKFEELLYGRHFR-VVFIGS 294
           K+G    +E E  +++  +H    +  EL+++ +G+         +L  +  R ++ IG 
Sbjct: 192 KRG----SEEEARRIMNITHDPKDIEMELAEMKQGEAEKKETTLGVLKAKWIRPMLLIGV 247

Query: 295 TLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRK 351
            L   QQ  GIN + Y++ ++F  AGL   +S L  + +GI N++  + AM+L+D++GRK
Sbjct: 248 GLAIFQQAVGINTVIYYAPTIFTKAGLGTSASALGTMGIGILNVIMCITAMILIDRVGRK 307

Query: 352 ALLQW 356
            LL W
Sbjct: 308 KLLIW 312

Could serve either a nutritional or an osmotic protection function.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q9FRL3|ERDL6_ARATH Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 175/326 (53%), Gaps = 14/326 (4%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVV-SMCLGGAFIGSTLSGWI 111
           VL+  L    FG+  G  +    +I+ DLG    T++E  V  S+   GA +G+  SG I
Sbjct: 52  VLIVALGPIQFGFTCGYSSPTQAAITKDLGL---TVSEYSVFGSLSNVGAMVGAIASGQI 108

Query: 112 ADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP 171
           A+ +GR+ +  + A+P IIG    +  ++   + +GR + G G+G+      +Y+ E++P
Sbjct: 109 AEYIGRKGSLMIAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAP 168

Query: 172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES 231
             +RG  G+  Q++  +G+M + L+G+ V      WRI   + I+P  +L   + F  ES
Sbjct: 169 QNMRGGLGSVNQLSVTIGIMLAYLLGLFVP-----WRILAVLGILPCTLLIPGLFFIPES 223

Query: 232 PHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSK-LDRGDDGDIVKFEELLYGRHFRV 289
           P WL K G T E E   + L G  + +   + E+ + +      + V+F +L   R++  
Sbjct: 224 PRWLAKMGMTDEFETSLQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFP 283

Query: 290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVF-VGIANLLGSVVAMVLMDKL 348
           + +G  L  LQQL GIN + ++SS++F+SAG++S  A  F VG   ++ + ++  L+DK 
Sbjct: 284 LMVGIGLLVLQQLGGINGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKA 343

Query: 349 GRKALLQWSFFSMVICSSISLILEAF 374
           GR+ LL  S   M I  S+ ++  AF
Sbjct: 344 GRRLLLTISSVGMTI--SLVIVAAAF 367

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1

 Score =  142 bits (359), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 162/311 (52%), Gaps = 11/311 (3%)

Query: 58  LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR 117
           L   L+GY  GV++  +  +  +LG N  T  EGLVVS  L GA +GS  +G + D  GR
Sbjct: 15  LGGALYGYDTGVISGAILFMKKELGLNAFT--EGLVVSSLLVGAILGSGAAGKLTDRFGR 72

Query: 118 RRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGT 177
           ++A    AL   IG    A   N   M+L R ++G  +G   T+  LY++E++P   RG 
Sbjct: 73  KKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRGA 132

Query: 178 YGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYK 237
             +  Q+   +G++ S ++     + A  WR    ++ VP+ +L + ++F  ESP WL+ 
Sbjct: 133 LSSLNQLMITVGILLSYIVNYIFAD-AEAWRWMLGLAAVPSLLLLIGILFMPESPRWLFT 191

Query: 238 KGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI-GSTL 296
            G  ++A+   EKL G   +   + ++ + ++ D+G + +    L+    R   I G  L
Sbjct: 192 NGEESKAKKILEKLRGTKDIDQEIHDIKEAEKQDEGGLKE----LFDPWVRPALIAGLGL 247

Query: 297 FALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKAL 353
             LQQ  G N I Y++   F + G    +S L  V +G  N+L ++VA+ ++DK+GRK L
Sbjct: 248 AFLQQFIGTNTIIYYAPKTFTNVGFGNSASILGTVGIGTVNVLMTLVAIKIIDKIGRKPL 307

Query: 354 LQWSFFSMVIC 364
           L +    MVI 
Sbjct: 308 LLFGNAGMVIS 318

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
27261731	489	sugar transporter [Citrus unshiu]	0.973	0.754	0.981	0.0
225445194	488	PREDICTED: probable plastidic glucose tr	0.970	0.754	0.780	1e-169
255546433	508	sugar transporter, putative [Ricinus com	0.957	0.714	0.782	1e-169
224142161	489	predicted protein [Populus trichocarpa]	0.976	0.756	0.762	1e-163
449449521	490	PREDICTED: probable plastidic glucose tr	0.944	0.730	0.770	1e-161
357500677	490	Sugar transporter [Medicago truncatula]	0.973	0.753	0.737	1e-160
356531285	486	PREDICTED: probable plastidic glucose tr	0.952	0.742	0.756	1e-157
356520521	486	PREDICTED: probable plastidic glucose tr	0.952	0.742	0.758	1e-157
42570243	494	putative plastidic glucose transporter 2	0.970	0.744	0.723	1e-155
15220399	493	putative plastidic glucose transporter 2	0.952	0.732	0.728	1e-153

>gi|27261731|gb|AAN86062.1| sugar transporter [Citrus unshiu]

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/369 (98%), Positives = 365/369 (98%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS
Sbjct: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA
Sbjct: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA
Sbjct: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR
Sbjct: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
           TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ
Sbjct: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS
Sbjct: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360

Query: 361 MVICSSISL 369
           M +  +I +
Sbjct: 361 MAVSMAIQV 369

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445194|ref|XP_002284229.1| PREDICTED: probable plastidic glucose transporter 2 [Vitis vinifera] gi|297738801|emb|CBI28046.3| unnamed protein product [Vitis vinifera] gi|310877904|gb|ADP37183.1| putative monosaccharide transporter [Vitis vinifera]

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 288/369 (78%), Positives = 325/369 (88%), Gaps = 1/369 (0%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MWGRQ EAS+ YKR SSRD +   D+EE++AL QNG   E TNPSWKLS PH++VAT+SS
Sbjct: 1   MWGRQGEASVTYKRVSSRDNTKV-DMEESSALFQNGMGQEITNPSWKLSLPHIIVATISS 59

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLE+I+LDLGF+GNTLAEGLVVS CLGGAFIGS  SGWIADG+GRRRA
Sbjct: 60  FLFGYHLGVVNEPLETIALDLGFSGNTLAEGLVVSTCLGGAFIGSLFSGWIADGIGRRRA 119

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMIIGAS+SATT++L GML+GRF+VGTGMG+GP VA+LYVTEVSP FVRGTYG+
Sbjct: 120 FQLCALPMIIGASVSATTKSLEGMLIGRFLVGTGMGVGPPVASLYVTEVSPAFVRGTYGS 179

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQ+ATCLGLMG+L IGIPVK I GWWRICFW++ VPA IL  AM+FCAESPHWLYKKGR
Sbjct: 180 FIQLATCLGLMGALFIGIPVKAIIGWWRICFWIATVPAGILAFAMMFCAESPHWLYKKGR 239

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
            AEAEAEFEKLLGGSHVK ++A+L K DRGD+ D VK  ELLYGRHFRVVFIGSTLFALQ
Sbjct: 240 IAEAEAEFEKLLGGSHVKFAMADLHKSDRGDETDAVKLSELLYGRHFRVVFIGSTLFALQ 299

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINA+FYFSS+VFKSAG+ S LANVFVGIANL GS+ AM+LMDKLGRKALL WSFF 
Sbjct: 300 QLSGINAVFYFSSTVFKSAGVPSDLANVFVGIANLSGSITAMILMDKLGRKALLVWSFFG 359

Query: 361 MVICSSISL 369
           M +  S+ +
Sbjct: 360 MAVAMSVQV 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546433|ref|XP_002514276.1| sugar transporter, putative [Ricinus communis] gi|223546732|gb|EEF48230.1| sugar transporter, putative [Ricinus communis]

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 284/363 (78%), Positives = 318/363 (87%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MWGRQRE+  MYKR  SRD +   D+E+ +AL+QN  + E TNPSW LSFPHV+ AT+SS
Sbjct: 14  MWGRQRESKSMYKRMPSRDYTKNSDIEDDSALIQNNMDAEVTNPSWSLSFPHVVAATISS 73

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLESIS+DLGFNGNTLAEGLVVS CLGGAFIGS  SGWIADGVGRRRA
Sbjct: 74  FLFGYHLGVVNEPLESISIDLGFNGNTLAEGLVVSTCLGGAFIGSLFSGWIADGVGRRRA 133

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMIIGAS+SATT  L GML+GRF+VGTGMGLGP VAALYVTEVSP FVRGTYG+
Sbjct: 134 FQLCALPMIIGASVSATTTTLAGMLVGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTYGS 193

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQIATCLGLMG+L IGIPV+EI GWWRICFWVS +PA +L LAMVFC ESPHWLYK+GR
Sbjct: 194 FIQIATCLGLMGALFIGIPVREINGWWRICFWVSAIPAGLLALAMVFCVESPHWLYKQGR 253

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
           +AEAE EFE+LLGG+HV+ ++ ELSK+DRGD+ D +   ELLYGRHFRVVFIGSTLFALQ
Sbjct: 254 SAEAEIEFERLLGGAHVRYAIQELSKVDRGDNIDNITLSELLYGRHFRVVFIGSTLFALQ 313

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINA+FYFSS+VFKSAG+ S LANVFVGIANL GS+ AMVLMD+LGRK LL WSFF 
Sbjct: 314 QLSGINAVFYFSSTVFKSAGVPSDLANVFVGIANLTGSLAAMVLMDRLGRKVLLLWSFFG 373

Query: 361 MVI 363
           M +
Sbjct: 374 MAV 376

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142161|ref|XP_002324427.1| predicted protein [Populus trichocarpa] gi|222865861|gb|EEF02992.1| predicted protein [Populus trichocarpa]

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 282/370 (76%), Positives = 317/370 (85%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           M G +     MYKR SSRD +   DVE+ + + Q+  + E TNPSW+LSFPHVL AT+S+
Sbjct: 1   MRGHRTGEYSMYKRMSSRDFTVAADVEDNSVVSQSIPDQEITNPSWRLSFPHVLAATISA 60

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVS CLGGA IGS  SGWIADG+GRRRA
Sbjct: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSTCLGGALIGSLFSGWIADGIGRRRA 120

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMI+GASISATT+ L GMLLGR +VGTGMGLGP V++LYVTEVSP FVRGTYG+
Sbjct: 121 FQLCALPMIVGASISATTKTLAGMLLGRLLVGTGMGLGPPVSSLYVTEVSPSFVRGTYGS 180

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQIATCLGLM +L IGIPV+EIAGWWRICFWVS VPA IL L+M+FCAESPHWLYK+GR
Sbjct: 181 FIQIATCLGLMAALFIGIPVREIAGWWRICFWVSTVPAGILALSMMFCAESPHWLYKQGR 240

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
           TAEAEAEFE+LLGG+HVK ++ ELSKLDRGDD D V F ELLYGR FRVVFIGSTLFALQ
Sbjct: 241 TAEAEAEFERLLGGAHVKFAMQELSKLDRGDDSDDVHFSELLYGRCFRVVFIGSTLFALQ 300

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINAIFYFSS+VFK+AG+ S LANVFVGIANL GSV+AMVLMDK+GRK LL WSF  
Sbjct: 301 QLSGINAIFYFSSTVFKNAGVPSDLANVFVGIANLSGSVIAMVLMDKMGRKVLLLWSFSG 360

Query: 361 MVICSSISLI 370
           M +   + ++
Sbjct: 361 MAVSMGLQVV 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449521|ref|XP_004142513.1| PREDICTED: probable plastidic glucose transporter 2-like [Cucumis sativus] gi|449522117|ref|XP_004168074.1| PREDICTED: probable plastidic glucose transporter 2-like [Cucumis sativus]

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 276/358 (77%), Positives = 309/358 (86%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MW R+REA   YKR S +D S + D+E+ +A +QNG + E +NPSW LS PHVLVATL+S
Sbjct: 1   MWDRKREAFSTYKRLSLKDNSDSIDMEDNSAHLQNGKDFEASNPSWSLSLPHVLVATLTS 60

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLE IS DLGFNGNT+AEGLVVS CLGGA IGS LSGWIADGVGRRRA
Sbjct: 61  FLFGYHLGVVNEPLEIISADLGFNGNTMAEGLVVSTCLGGALIGSLLSGWIADGVGRRRA 120

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQL ALPMI+GA +SA T+ L GMLLGR  VGTGMGLGP VA+LYVTE+SP FVRGTYG+
Sbjct: 121 FQLSALPMILGAGMSAMTKTLAGMLLGRLFVGTGMGLGPPVASLYVTEISPAFVRGTYGS 180

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQIATCLGLM +LLIGIPVK+IA WWR CFWVS +PAA+L LAMVFCAESPHWLYK+GR
Sbjct: 181 FIQIATCLGLMAALLIGIPVKDIADWWRTCFWVSTIPAALLALAMVFCAESPHWLYKQGR 240

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
           T EAE EFEKLLGGSHVKS+LAELSK DRGD+ D VK  ELL+GRHF+VVFIGSTLFALQ
Sbjct: 241 TEEAETEFEKLLGGSHVKSALAELSKFDRGDEPDDVKLSELLFGRHFQVVFIGSTLFALQ 300

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSF 358
           QLSGINAIFYFSS+VFKS G+ S LANV VG++NL GS+VAM+LMD+LGRK LL WSF
Sbjct: 301 QLSGINAIFYFSSTVFKSVGVPSNLANVCVGLSNLAGSIVAMLLMDRLGRKLLLLWSF 358

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500677|ref|XP_003620627.1| Sugar transporter [Medicago truncatula] gi|355495642|gb|AES76845.1| Sugar transporter [Medicago truncatula]

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 276/374 (73%), Positives = 318/374 (85%), Gaps = 5/374 (1%)

Query: 1   MWGRQREASMMYKRTSSRDRSS-TFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLS 59
           MWG  RE+S++YKRT S+D S+   DVEE   L+ N  + E TNPSWKLS PHVLVAT++
Sbjct: 1   MWGHHRESSIVYKRTPSKDNSNMEEDVEENLDLLDNFIDKETTNPSWKLSLPHVLVATIT 60

Query: 60  SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR 119
           SFLFGYHLGVVNEPLESIS+DLGFNGNTLAEGLVVS+CLGGA  G  LSGWIAD VGRRR
Sbjct: 61  SFLFGYHLGVVNEPLESISVDLGFNGNTLAEGLVVSICLGGALFGCLLSGWIADAVGRRR 120

Query: 120 AFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYG 179
           AFQLCALPMIIGA++SA T NL GML+GR  VGTG+GLGP VAALYVTEVSP FVRGTYG
Sbjct: 121 AFQLCALPMIIGAAMSAATNNLFGMLVGRLFVGTGLGLGPPVAALYVTEVSPAFVRGTYG 180

Query: 180 AFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKG 239
           A IQIATC G++GSL IGIPVKEI+GWWR+CFWVS +PAAIL LAMVFCAESPHWLYK+G
Sbjct: 181 ALIQIATCFGILGSLFIGIPVKEISGWWRVCFWVSTIPAAILALAMVFCAESPHWLYKQG 240

Query: 240 RTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFAL 299
           RTAEAEAEFE+LLG S  K ++++LSK+DRG+D D VKF ELL+G H +VVFIGSTLFAL
Sbjct: 241 RTAEAEAEFERLLGVSEAKFAMSQLSKVDRGEDTDTVKFSELLHGHHSKVVFIGSTLFAL 300

Query: 300 QQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF 359
           QQLSGINA+FYFSS+VFKSAG+ S  ANV +G+ANL GS+++  LMDKLGRK LL WSFF
Sbjct: 301 QQLSGINAVFYFSSTVFKSAGVPSDFANVCIGVANLTGSIISTGLMDKLGRKVLLFWSFF 360

Query: 360 SMVICSSISLILEA 373
            M    +IS+I++A
Sbjct: 361 GM----AISMIIQA 370

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531285|ref|XP_003534208.1| PREDICTED: probable plastidic glucose transporter 2-like isoform 1 [Glycine max]

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 276/365 (75%), Positives = 313/365 (85%), Gaps = 4/365 (1%)

Query: 9   SMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLG 68
           S MYKRT SRD S+  D+EE + L+  G +   +NPS  LS PHVLVAT+SSFLFGYHLG
Sbjct: 6   SSMYKRTPSRDNSNMEDMEENSDLLDIGLDKGTSNPSLMLSLPHVLVATISSFLFGYHLG 65

Query: 69  VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128
           VVNEPLESIS+DLGF GNTLAEGLVVS+CLGGA IG  LSGWIADGVGRRRAFQLCALPM
Sbjct: 66  VVNEPLESISVDLGFRGNTLAEGLVVSICLGGALIGCLLSGWIADGVGRRRAFQLCALPM 125

Query: 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL 188
           IIGAS+SA T NL GML+GR  VGTG+GLGP VA+LYVTEVSP FVRGT+GAFIQIATCL
Sbjct: 126 IIGASMSAATNNLFGMLVGRLFVGTGLGLGPPVASLYVTEVSPAFVRGTFGAFIQIATCL 185

Query: 189 GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEF 248
           GLMG+L IGIPVKEI+GWWR+CFWVS +PAAIL  AMVFCAESPHWLYK+GRTAEAEAEF
Sbjct: 186 GLMGALFIGIPVKEISGWWRVCFWVSTIPAAILAAAMVFCAESPHWLYKQGRTAEAEAEF 245

Query: 249 EKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAI 308
           E+LLG S  K +++ELSK+DRGDD D VK  ELL+GRH +VVFIGSTLFALQQLSGINA+
Sbjct: 246 ERLLGVSEAKFAMSELSKVDRGDDTDTVKLSELLHGRHSKVVFIGSTLFALQQLSGINAV 305

Query: 309 FYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSIS 368
           FYFSS+VFKSAG+ S +ANV +GIANL GS+V+M LMDKLGRK LL WSFF M    +I+
Sbjct: 306 FYFSSTVFKSAGVPSDIANVCIGIANLAGSIVSMGLMDKLGRKVLLFWSFFGM----AIA 361

Query: 369 LILEA 373
           +IL+A
Sbjct: 362 MILQA 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520521|ref|XP_003528910.1| PREDICTED: probable plastidic glucose transporter 2-like [Glycine max]

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 277/365 (75%), Positives = 312/365 (85%), Gaps = 4/365 (1%)

Query: 9   SMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLG 68
           S MYKRT SRD S+  DVEE + L+  G +   +NPS  LS PHVLVAT+SSFLFGYHLG
Sbjct: 6   SSMYKRTPSRDNSNMEDVEENSDLLDIGLDKGTSNPSLMLSLPHVLVATISSFLFGYHLG 65

Query: 69  VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128
           VVNEPLESIS+DLGF GNTLAEGLVVS+CLGGA IG  LSGWIADGVGRRRAFQLCALPM
Sbjct: 66  VVNEPLESISVDLGFRGNTLAEGLVVSICLGGALIGCLLSGWIADGVGRRRAFQLCALPM 125

Query: 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL 188
           IIGAS+SA T NL GML+GR  VGTG+GLGP VA+LYVTEVSP FVRGT+GAFIQIATCL
Sbjct: 126 IIGASMSAATNNLFGMLVGRLFVGTGLGLGPPVASLYVTEVSPAFVRGTFGAFIQIATCL 185

Query: 189 GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEF 248
           GLMG+L IGIPVKEI+GWWR+CFWVS +PAAIL  AMVFCAESPHWLYK+GRTAEAEAEF
Sbjct: 186 GLMGALFIGIPVKEISGWWRVCFWVSTIPAAILATAMVFCAESPHWLYKQGRTAEAEAEF 245

Query: 249 EKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAI 308
           E+LLG S  K +++ELSK DRGDD D VK  ELL+GRH +VVFIGSTLFALQQLSGINA+
Sbjct: 246 ERLLGVSEAKFAMSELSKADRGDDSDSVKLSELLHGRHSKVVFIGSTLFALQQLSGINAV 305

Query: 309 FYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSIS 368
           FYFSS+VFKSAG+ S +ANV +GIANL GS+V+M LMDKLGRK LL WSFF M    +I+
Sbjct: 306 FYFSSTVFKSAGVPSDIANVCIGIANLAGSIVSMGLMDKLGRKVLLFWSFFGM----AIA 361

Query: 369 LILEA 373
           +IL+A
Sbjct: 362 MILQA 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42570243|ref|NP_849855.2| putative plastidic glucose transporter 2 [Arabidopsis thaliana] gi|332196503|gb|AEE34624.1| putative plastidic glucose transporter 2 [Arabidopsis thaliana]

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 270/373 (72%), Positives = 315/373 (84%), Gaps = 5/373 (1%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNG--TEVENTNPSWKLSFPHVLVATL 58
           M G QRE S MYKRTSSRD S   DVE+++ L++N    E+E TNPSWK S PHVLVAT+
Sbjct: 1   MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query: 59  SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
           SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS  SG +ADG GRR
Sbjct: 61  SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query: 119 RAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY 178
           RAFQ+CALPMI+GA +S  + +L  MLLGRF+VGTGMGLGP VAALYVTEVSP FVRGTY
Sbjct: 121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query: 179 GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
           G+FIQIATCLGLM +L IGIPV  I GWWR+CFW+S +PAA+L L M  CAESP WL+K+
Sbjct: 181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240

Query: 239 GRTAEAEAEFEKLLGGSHVKSSLAELSK--LDRGDDGDIVKFEELLYGRHFRVVFIGSTL 296
           G+ AEAEAEFE+LLGGSHVK+++AEL K  LD+ D+ D+V   ELLYGRH RVVFIGSTL
Sbjct: 241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTL 300

Query: 297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW 356
           FALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK LL W
Sbjct: 301 FALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLW 360

Query: 357 SFFSMVICSSISL 369
           SF  MV CS+++L
Sbjct: 361 SFIGMV-CSAMAL 372

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220399|ref|NP_176898.1| putative plastidic glucose transporter 2 [Arabidopsis thaliana] gi|75334518|sp|Q9FYG3.1|PLST2_ARATH RecName: Full=Probable plastidic glucose transporter 2 gi|9828628|gb|AAG00251.1|AC002130_16 F1N21.12 [Arabidopsis thaliana] gi|110742090|dbj|BAE98976.1| transport protein like protein [Arabidopsis thaliana] gi|332196504|gb|AEE34625.1| putative plastidic glucose transporter 2 [Arabidopsis thaliana]

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 266/365 (72%), Positives = 308/365 (84%), Gaps = 4/365 (1%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNG--TEVENTNPSWKLSFPHVLVATL 58
           M G QRE S MYKRTSSRD S   DVE+++ L++N    E+E TNPSWK S PHVLVAT+
Sbjct: 1   MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query: 59  SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
           SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS  SG +ADG GRR
Sbjct: 61  SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query: 119 RAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY 178
           RAFQ+CALPMI+GA +S  + +L  MLLGRF+VGTGMGLGP VAALYVTEVSP FVRGTY
Sbjct: 121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query: 179 GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
           G+FIQIATCLGLM +L IGIPV  I GWWR+CFW+S +PAA+L L M  CAESP WL+K+
Sbjct: 181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240

Query: 239 GRTAEAEAEFEKLLGGSHVKSSLAELSK--LDRGDDGDIVKFEELLYGRHFRVVFIGSTL 296
           G+ AEAEAEFE+LLGGSHVK+++AEL K  LD+ D+ D+V   ELLYGRH RVVFIGSTL
Sbjct: 241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTL 300

Query: 297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW 356
           FALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK LL W
Sbjct: 301 FALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLW 360

Query: 357 SFFSM 361
           SF  M
Sbjct: 361 SFIGM 365

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
TAIR|locus:2019554	494	AT1G67300 [Arabidopsis thalian	0.970	0.744	0.705	8e-140
TAIR|locus:2017899	495	SGB1 "SUPPRESSOR OF G PROTEIN	0.912	0.698	0.696	2.6e-127
TAIR|locus:2205548	524	AT1G05030 [Arabidopsis thalian	0.860	0.622	0.436	9.6e-73
TAIR|locus:2181422	546	PGLCT "plastidic GLC transloca	0.825	0.573	0.420	4.5e-66
DICTYBASE|DDB_G0278261	630	DDB_G0278261 "solute carrier f	0.873	0.525	0.317	2.4e-39
TAIR|locus:2016407	488	AT1G19450 [Arabidopsis thalian	0.820	0.637	0.324	4.3e-38
TIGR_CMR|CBU_0347	463	CBU_0347 "d-xylose-proton symp	0.823	0.673	0.310	5.5e-38
TAIR|locus:2058774	580	INT3 "nositol transporter 3" [	0.878	0.574	0.319	7e-38
UNIPROTKB|P58351	510	SLC2A2 "Solute carrier family	0.746	0.554	0.305	1e-37
UNIPROTKB|F1PJ96	524	SLC2A2 "Uncharacterized protei	0.783	0.566	0.298	1.3e-37

TAIR|locus:2019554 AT1G67300 [Arabidopsis thaliana (taxid:3702)]

 Score = 1368 (486.6 bits), Expect = 8.0e-140, P = 8.0e-140
 Identities = 263/373 (70%), Positives = 308/373 (82%)

Query:     1 MWGRQREASMMYKXXXXXXXXXXFDVEETTALVQNGT--EVENTNPSWKLSFPHVLVATL 58
             M G QRE S MYK           DVE+++ L++N    E+E TNPSWK S PHVLVAT+
Sbjct:     1 MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query:    59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
             SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS  SG +ADG GRR
Sbjct:    61 SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query:   119 RAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY 178
             RAFQ+CALPMI+GA +S  + +L  MLLGRF+VGTGMGLGP VAALYVTEVSP FVRGTY
Sbjct:   121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query:   179 GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
             G+FIQIATCLGLM +L IGIPV  I GWWR+CFW+S +PAA+L L M  CAESP WL+K+
Sbjct:   181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240

Query:   239 GRTAEAEAEFEKLLGGSHVKSSLAELSKLD--RGDDGDIVKFEELLYGRHFRVVFIGSTL 296
             G+ AEAEAEFE+LLGGSHVK+++AEL KLD  + D+ D+V   ELLYGRH RVVFIGSTL
Sbjct:   241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTL 300

Query:   297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW 356
             FALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK LL W
Sbjct:   301 FALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLW 360

Query:   357 SFFSMVICSSISL 369
             SF  MV CS+++L
Sbjct:   361 SFIGMV-CSAMAL 372

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2017899 SGB1 "SUPPRESSOR OF G PROTEIN BETA1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1250 (445.1 bits), Expect = 2.6e-127, P = 2.6e-127
 Identities = 241/346 (69%), Positives = 280/346 (80%)

Query:    25 DVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFN 84
             D  ET   +  GT  +  NPSWK S PHVLVA+L+S LFGYHLGVVNE LESIS+DLGF+
Sbjct:    30 DKAETAVRLPTGTGKDCGNPSWKRSLPHVLVASLTSLLFGYHLGVVNETLESISIDLGFS 89

Query:    85 GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM 144
             GNT+AEGLVVS CLGGAFIGS  SG +ADGVGRRRAFQL ALPMI+GAS+SA+T +L+GM
Sbjct:    90 GNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRAFQLSALPMIVGASVSASTESLMGM 149

Query:   145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA 204
             LLGRF+VG GMG+GP+V ALYVTEVSP +VRGTYG+  QIATC+GL+GSL  GIP K+  
Sbjct:   150 LLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNL 209

Query:   205 GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAEL 264
             GWWRICFW+S VPAA+L + M  C ESP WL+K+GR AEAEA FEKLLGGS+VK+++AEL
Sbjct:   210 GWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGRAAEAEAVFEKLLGGSYVKAAMAEL 269

Query:   265 SKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG 324
              K DRGDD D  K  ELL+GR FRVVFIGSTLFALQQLSGINA+FYFSS+VFK AG+ S 
Sbjct:   270 VKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFALQQLSGINAVFYFSSTVFKKAGVPSA 329

Query:   325 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLI 370
              AN+ VG+ NLLGS VA+VLMDKLGRK LL  SF  M +   +  I
Sbjct:   330 SANICVGVCNLLGSTVAVVLMDKLGRKVLLIGSFAGMAVSLGLQAI 375

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2205548 AT1G05030 [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 144/330 (43%), Positives = 217/330 (65%)

Query:    46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGS 105
             W  +FPHV VA++++FLFGYH+GV+N P+ SI+ +LGF GN++ EGLVVS+ + GAFIGS
Sbjct:    76 WLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVSIFIAGAFIGS 135

Query:   106 TLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY 165
              ++G + D  G RR FQ+  +P+I+GA +SA   +L  +L GRF+VG G+G+   +  +Y
Sbjct:   136 IVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILCGRFLVGLGIGVNTVLVPIY 195

Query:   166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225
             ++EV+P   RG+ G   QI TCLG++ SLL+GIP ++   WWR   +V+ +P  +L L M
Sbjct:   196 ISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLYVASMPGFLLALGM 255

Query:   226 VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI-VKFEELLYG 284
              F  ESP WL K GR  +A+     + GGS V+ ++ +   + +    ++  ++ ELL  
Sbjct:   256 QFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQSVMKNSGSNLNSRWLELLDK 315

Query:   285 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGL-ANVFVGIANLLGSVVAMV 343
              H RV FIG +LF LQQ +GIN + YFSS  F++ G++SG  A+++VG+ N  G++ A  
Sbjct:   316 PHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGITSGAQASLYVGVTNFAGALCASY 375

Query:   344 LMDKLGRKALLQWSFFSMVICSSISLILEA 373
             L+DK GRK LL  S+  M +  S+ LI+ A
Sbjct:   376 LIDKQGRKKLLIGSYLGMAV--SMFLIVYA 403

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2181422 PGLCT "plastidic GLC translocator" [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 132/314 (42%), Positives = 200/314 (63%)

Query:    51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGW 110
             P V VA L + LFGYHLGVVN  LE ++ DLG   NT+ +G +VS  L GA +GS   G 
Sbjct:   107 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGA 166

Query:   111 IADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS 170
             +AD  GR R FQL A+P+ IGA + AT +++  M++GR + G G+G+   +  LY++E+S
Sbjct:   167 LADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEIS 226

Query:   171 PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE 230
             P  +RG  G+  Q+  C+G++ +L+ G+P+     WWR  F V+++P+ +L + M F  E
Sbjct:   227 PTEIRGALGSVNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPE 286

Query:   231 SPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV 290
             SP WL ++G+ +EAE   + L G   V   + +LS   +G       + +L   R+++VV
Sbjct:   287 SPRWLVQQGKVSEAEKAIKTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVV 346

Query:   291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLA-NVFVGIANLLGSVVAMVLMDKLG 349
              +G+ LF  QQL+GINA+ Y+S+SVF+SAG+ S +A +  VG +N+ G+ VA  LMDK+G
Sbjct:   347 SVGAALFLFQQLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMG 406

Query:   350 RKALLQWSFFSMVI 363
             RK+LL  SF  M +
Sbjct:   407 RKSLLLTSFGGMAL 420

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

DICTYBASE|DDB_G0278261 DDB_G0278261 "solute carrier family 2 member protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 422 (153.6 bits), Expect = 2.4e-39, P = 2.4e-39
 Identities = 112/353 (31%), Positives = 179/353 (50%)

Query:    25 DVEETTALVQNGTEVENTNPSWKLSFP---HVLVATLSSFLFGYHLGVVNEPLESISLDL 81
             ++  TT   +N  E  N N + KLSF    +V  + LS+  FGY+ GV++  +  I    
Sbjct:   152 NISTTTITTRNNNENLNNNNNSKLSFFLIFNVSFSVLSTLQFGYNTGVISPTILDIQTIF 211

Query:    82 GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL 141
             G N N   + ++VS  L GA +GS LSG+  D  GR++      L  ++G  + +  +N 
Sbjct:   212 GLNVNE--KSMLVSSVLFGAMLGSFLSGFFVDIFGRKKTLLGNNLFYLLGPLLCSVGKNY 269

Query:   142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK 201
               +L+GR + G G+G+  +V  LY+TE+SPP  RG+ G   Q    LG+M S L    + 
Sbjct:   270 ATLLIGRLITGVGVGIASSVVPLYITEISPPSFRGSLGLLRQSTVTLGIMLSSLFAYGLL 329

Query:   202 EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL 261
               +  WR  F ++ +P+    +   +  ESP WL  K R  EA+   +K+    HV   L
Sbjct:   330 VYSNGWRYTFAIASIPSLFQFILGYWFVESPRWLVSKNREDEAKQIMKKI--EPHVSEDL 387

Query:   262 AEL-------SKLD-RGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSS 313
              +L       S L+ +G+D  +  F+   Y ++ ++  IG  L  LQQ  GIN + Y+S 
Sbjct:   388 IDLQITRIRSSVLEQKGNDNWLQLFQ---Y-QYLKIYIIGFGLNMLQQFVGINCVIYYSG 443

Query:   314 SVFKSAGLSSGLA---NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVI 363
              + + AG +   A      VGI  L+  ++++ L+D+ GRK LL      M+I
Sbjct:   444 IILEDAGFAKNAAVLIGALVGIPQLVMLLISVWLIDRFGRKPLLLVGCIGMII 496

GO:0055085 "transmembrane transport" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2016407 AT1G19450 [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 106/327 (32%), Positives = 178/327 (54%)

Query:    53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVV-SMCLGGAFIGSTLSGWI 111
             VL+  L    FG+  G  +    +I+ DLG    T++E  V  S+   GA +G+  SG I
Sbjct:    53 VLIVALGPIQFGFTCGYSSPTQAAITKDLGL---TVSEYSVFGSLSNVGAMVGAIASGQI 109

Query:   112 ADGVGRRRAFQLCALPMIIG-ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS 170
             A+ VGR+ +  + A+P IIG  SIS   ++   + +GR + G G+G+      +Y+ E++
Sbjct:   110 AEYVGRKGSLMIAAIPNIIGWLSISFA-KDTSFLYMGRLLEGFGVGIISYTVPVYIAEIA 168

Query:   171 PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE 230
             P  +RG  G+  Q++  +G+M + L+G+ V      WRI   + ++P  +L   + F  E
Sbjct:   169 PQTMRGALGSVNQLSVTIGIMLAYLLGLFVP-----WRILAVLGVLPCTLLIPGLFFIPE 223

Query:   231 SPHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSK-LDRGDDGDIVKFEELLYGRHFR 288
             SP WL K G T + E   + L G  + +   + E+ + +        V+F +L   R++ 
Sbjct:   224 SPRWLAKMGLTDDFETSLQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYF 283

Query:   289 VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL-SSGLANVFVGIANLLGSVVAMVLMDK 347
              + +G  L ALQQL GIN + ++SS++F+SAG+ SS +A   VG+  ++ + +A  L+DK
Sbjct:   284 PLMVGIGLLALQQLGGINGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATWLVDK 343

Query:   348 LGRKALLQWSFFSMVICSSISLILEAF 374
              GR+ LL  S   M I  S+ ++  AF
Sbjct:   344 AGRRLLLMISSIGMTI--SLVIVAVAF 368

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 102/328 (31%), Positives = 173/328 (52%)

Query:    35 NGTEVENTNPSWKLSFPHVL--VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGL 92
             N T+ +   P+ K  F  V+  +A  +  LFGY  GV++  +  IS +  F+ +    G 
Sbjct:     2 NSTD-QYVLPAKKSHFYWVIAFIAAFAGILFGYDTGVISGAILFISQE--FHLSPQMNGF 58

Query:    93 VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG 152
             VVS  L GAF+G+  SG +AD +GR+R   + AL  I+G +IS+ T ++  +++GR +VG
Sbjct:    59 VVSAVLIGAFLGALFSGHLADYIGRKRLLIIDALIFIVGTAISSMTVSISWLVIGRIIVG 118

Query:   153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212
               +G+    A LY++E+SPP  RG   +  Q+A  +G+  S ++         W R  F 
Sbjct:   119 IAIGIASYSAPLYISEISPPHRRGALVSLNQLAVTIGIFLSYVVDYYFARHDAW-RSMFA 177

Query:   213 VSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSKLDRGD 271
               ++PAA+L L M+    SP W++ +G   +A     KL G G H +  L  +    +  
Sbjct:   178 AGVIPAALLLLGMIVLPYSPRWIFSRGHEEKALWILRKLRGHGPHAEQELEHIRASLQQQ 237

Query:   272 DGDIVKFEELLYGRHFR-VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG----LA 326
              GD       L+ +  R  +FI   L   QQ++GIN + Y++ ++ K  G  +     LA
Sbjct:   238 KGDW----RTLFSKIIRPTLFIAIGLAVFQQVTGINTVLYYAPTILKMTGFQASQTAILA 293

Query:   327 NVFVGIANLLGSVVAMVLMDKLGRKALL 354
              + +G   ++ +++++ L+D LGR+ LL
Sbjct:   294 TMGIGAVLVIITIISLPLIDSLGRRPLL 321

GO:0015519 "D-xylose:hydrogen symporter activity" evidence=ISS

GO:0015753 "D-xylose transport" evidence=ISS

TAIR|locus:2058774 INT3 "nositol transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 115/360 (31%), Positives = 183/360 (50%)

Query:    26 VEETTALVQ-NGTEVENTNPSWKLSFPHVLVATLSS----FLFGYHLGVVNEPLESISLD 80
             VEE +   Q N TEV  T  +W+   P+++   LS+     LFGY+ GV+   L  I  +
Sbjct:     2 VEEASKSEQINITEVWTT--TWET--PYIMRLALSAGIGGLLFGYNTGVIAGALLYIKEE 57

Query:    81 LG-FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR 139
              G  +  T  + ++VSM + GA +G+ + GW  D  GRR +  +  +  ++GA +     
Sbjct:    58 FGEVDNKTWLQEIIVSMTVAGAIVGAAIGGWYNDKFGRRMSVLIADVLFLLGALVMVIAH 117

Query:   140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP 199
                 ++LGR +VG G+G+    + LY++E+SP  +RG   +   +    G   S LI + 
Sbjct:   118 APWVIILGRLLVGFGVGMASMTSPLYISEMSPARIRGALVSTNGLLITGGQFLSYLINLA 177

Query:   200 VKEIAGWWRICFWVSIVPAAI-LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVK 258
                  G WR    VS +PA I  CL M+   ESP WLY+  R AE+    E++     V+
Sbjct:   178 FVHTPGTWRWMLGVSAIPAIIQFCL-MLTLPESPRWLYRNDRKAESRDILERIYPAEMVE 236

Query:   259 SSLAELSKLDRGD--DGDIV--KFEELLYGRHFRVVF-----IGSTLFALQQLSGINAIF 309
             + +A L +  R +  D DI+   F + L G     V       G T+   QQ  GIN + 
Sbjct:   237 AEIAALKESVRAETADEDIIGHTFSDKLRGALSNPVVRHGLAAGITVQVAQQFVGINTVM 296

Query:   310 YFSSSVFKSAGLSSG-----LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVIC 364
             Y+S ++ + AG +S      LA +  G+ N +GSVV+M+ +D+ GR+ L+  S F ++ C
Sbjct:   297 YYSPTILQFAGYASNKTAMALALITSGL-NAVGSVVSMMFVDRYGRRKLMIISMFGIITC 355

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|P58351 SLC2A2 "Solute carrier family 2, facilitated glucose transporter member 2" [Bos taurus (taxid:9913)]

 Score = 350 (128.3 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
 Identities = 91/298 (30%), Positives = 155/298 (52%)

Query:    87 TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR---NLIG 143
             T+   L VS    G  I S   G + D +GR +A  +  +  ++GA +   ++   + I 
Sbjct:    92 TMFWSLSVSSFAVGGMIASFFGGLLGDKLGRIKALLVANILSLVGALLMGFSKLGPSHIL 151

Query:   144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI 203
             ++ GR + G   GL   +  +Y+ E++P  +RG  GA  Q+A   G++ S ++G+    I
Sbjct:   152 IISGRGISGLYCGLISGLIPMYIGEIAPTTLRGAIGALHQLAIVTGILISQIVGLDF--I 209

Query:   204 AG---WWRICFWVSIVPAAILCLAMVFCAESPHWLY-KKGRTAEAEAEFEKLLGGSHVKS 259
              G    W I   +S VPA + CL + FC ESP +LY K    A+A+   ++L G   +  
Sbjct:   210 LGNHELWHILLGLSAVPAILQCLLLFFCPESPRYLYIKLDEEAKAKKSLKRLRGSDDITK 269

Query:   260 SLAELSK-LDRGDDGDIVKFEELLYGRHFRV-VFIGSTLFALQQLSGINAIFYFSSSVFK 317
              + E+ K  +   +   V   +L     +R  + +   L A QQ SGIN IFY+S+S+F+
Sbjct:   270 DITEMRKEREEASNEKKVSIIQLFTNASYRQPILVALMLHAAQQFSGINGIFYYSTSIFQ 329

Query:   318 SAGLSSGL-ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICS---SISLIL 371
             +AG+S  + A + VG  N + + V++ L++K GR++L       M +C+   S+ L+L
Sbjct:   330 TAGISQPVYATIGVGAVNTVFTAVSVFLVEKAGRRSLFLIGMSGMFVCAIFMSVGLVL 387

GO:0055056 "D-glucose transmembrane transporter activity" evidence=IEA

GO:0033300 "dehydroascorbic acid transporter activity" evidence=IEA

GO:0005903 "brush border" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1PJ96 SLC2A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 345 (126.5 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
 Identities = 93/312 (29%), Positives = 156/312 (50%)

Query:    73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132
             PL         N  T+   L VS    G  I S   GW+ D +GR +A  +  +  + GA
Sbjct:    80 PLAEEETTASSNLVTMLWSLSVSSFAIGGMIASFFGGWLGDRIGRVKAMLVANILSLAGA 139

Query:   133 SISATTR---NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLG 189
              +   ++   + I ++ GR + G   GL   +  +Y+ E++P  +RG  G   Q+A   G
Sbjct:   140 LLMGFSKLGPSHILIISGRSLSGLYCGLISGLVPMYIGEIAPTTLRGALGTLHQLAIVTG 199

Query:   190 LMGSLLIGIPVKEIAG---WWRICFWVSIVPAAILCLAMVFCAESPHWLY-KKGRTAEAE 245
             ++ S ++G+    I G    W I   +S VPA I  L ++FC ESP +LY K      A+
Sbjct:   200 ILISQIVGLNF--ILGNHEQWHILLGLSGVPAIIQSLLLLFCPESPRYLYIKLDEEVRAK 257

Query:   246 AEFEKLLGGSHVKSSLAELSK-LDRGDDGDIVKFEELLYGRHFRV-VFIGSTLFALQQLS 303
                ++L G + +   +AE+ K  +      +V   +L     +R  + +   L   QQ S
Sbjct:   258 KSLKRLRGDADITKDIAEMRKEKEEASSEQVVSIIQLFTNSCYRQPILVALMLHLAQQFS 317

Query:   304 GINAIFYFSSSVFKSAGLSSGL-ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMV 362
             GIN IFY+S+S+F++AG+S  + A + VG  N + + V++ L++K GR++L       M 
Sbjct:   318 GINGIFYYSTSIFQTAGISEPVYATIGVGTINTIFTAVSVFLVEKAGRRSLFLIGMSGMF 377

Query:   363 ICS---SISLIL 371
             +C+   S+ L+L
Sbjct:   378 VCAIFMSLGLVL 389

GO:0016021 "integral to membrane" evidence=IEA

GO:0005355 "glucose transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FYG3	PLST2_ARATH	No assigned EC number	0.7287	0.9525	0.7322	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016716001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (488 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	379
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-56
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	7e-47
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	3e-39
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-15
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	1e-14
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-14
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-11
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	7e-10
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	2e-08
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	3e-07
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	2e-06
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-05
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	2e-05
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	2e-05
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	6e-05
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	5e-04
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	7e-04
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	7e-04
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	0.002
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	0.002

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  190 bits (486), Expect = 1e-56
 Identities = 114/343 (33%), Positives = 180/343 (52%), Gaps = 19/343 (5%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAE---------GLVVSMCLGGAFI 103
            LVA L  FLFGY  GV+   L  I     F   T            GL+VS+   G  I
Sbjct: 2   ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLI 61

Query: 104 GSTLSGWIADGVGRRRAFQLCALPMIIGA--SISATTRNLIGMLLGRFVVGTGMGLGPTV 161
           GS  +G + D  GR+++  +  +  +IGA     A  ++   +++GR +VG G+G    +
Sbjct: 62  GSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVL 121

Query: 162 AALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW--WRICFWVSIVPAA 219
             +Y++E++P  +RG  G+  Q+    G++ + +IG+ + + +    WRI   +  VPA 
Sbjct: 122 VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181

Query: 220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAE-LSKLDRGDDGDIVKF 278
           +L + ++F  ESP WL  KG+  EA A   KL G S V   + E    L+R  + +   +
Sbjct: 182 LLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASW 241

Query: 279 EELLYGRHFR-VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS-SGLANVFVGIANLL 336
            EL  G+  R  + +G  L   QQL+GINAIFY+S ++F++ GLS S L  + VG+ N +
Sbjct: 242 LELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVNFV 301

Query: 337 GSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEAFLVLVA 379
            + +A+ L+D+ GR+ LL      M IC    L+L   L+ VA
Sbjct: 302 FTFIAIFLVDRFGRRPLLLLGAAGMAIC---FLVLGVALLGVA 341

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  165 bits (421), Expect = 7e-47
 Identities = 107/345 (31%), Positives = 170/345 (49%), Gaps = 23/345 (6%)

Query: 54  LVATLSSFLFGYHLGVVNEPLESISLDLGFNGN------TLAEGLVVSMCLGGAFIGSTL 107
           L+A +   +FGY  GV+   L   + +  F         +   GLVVS+ L G FIG+  
Sbjct: 31  LIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALF 90

Query: 108 SGWIADGVGRRRAFQLCALPMIIGASISATTRNLIG---MLLGRFVVGTGMGLGPTVAAL 164
           +GW++D  GR+++  + AL  +IGA +       +    +++GR ++G G+G+   +  +
Sbjct: 91  AGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPM 150

Query: 165 YVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW---WRICFWVSIVPAAIL 221
           Y++E++P  +RG   +  Q+A   G++ +   G            WRI   + ++PA +L
Sbjct: 151 YLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKV-SLNNTLGWRIPLGLQLIPAGLL 209

Query: 222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHV-KSSLAELS----KLDRGDDGDIV 276
            L + F  ESP WL  KGR  EA     +L G S   K  L EL     K          
Sbjct: 210 FLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQP 269

Query: 277 KFEELLY--GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVG 331
            +  L     R  R +F+G  L   QQ +GINAI Y+S ++F++AG+S+    L ++ VG
Sbjct: 270 SWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVG 329

Query: 332 IANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEAFLV 376
             N   + VA+ L+D+ GR+ LL      M IC  +  IL A  V
Sbjct: 330 AVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFV 374

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  145 bits (367), Expect = 3e-39
 Identities = 96/335 (28%), Positives = 156/335 (46%), Gaps = 42/335 (12%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESI------SLDLGFNGNTLAEGLVVSMCLGGAFIGST 106
            LVATL   LFGY   V++  +ES+        +L  +      G  V+  L G  IG  
Sbjct: 14  TLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGA 73

Query: 107 LSGWIADGVGRRRAFQLCALPMIIGA-----------SISATTRNLIGML-LGRFVVGTG 154
           L G+ ++  GRR + ++ A+   I A           SI       +    + R + G G
Sbjct: 74  LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133

Query: 155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI-----GIPVKEIAGW--- 206
           +GL   ++ +Y+ E++P  +RG   +F Q A    + G L++      I     A W   
Sbjct: 134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI---IFGQLVVYFVNYFIARSGDASWLNT 190

Query: 207 --WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAEL 264
             WR  F    +PA +  + + F  E+P +L  +G+  +AE    K++G +    +L E+
Sbjct: 191 DGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEI 250

Query: 265 -SKLDRGDDGDIVKFEELL-YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS 322
              LD G         +LL +G    V+ IG  L   QQ  GIN + Y++  +FK+ G S
Sbjct: 251 KHSLDHG----RKTGGKLLMFG--VGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAS 304

Query: 323 SGLA---NVFVGIANLLGSVVAMVLMDKLGRKALL 354
           + +A    + VG+ NL  +V+A++ +DK GRK L 
Sbjct: 305 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ 339

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 3/176 (1%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIA 112
           +L+  L  FL G   G+++  L  ++ DLG + +    GL+VS    G  +GS L+G+++
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLS 58

Query: 113 DGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP 172
           D  GRRR   L  L   +G+ + A   +L  +L+GRF++G G G     AA  + E  PP
Sbjct: 59  DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 173 FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC 228
             RG           LG +   L+G  + E  G WR  F +  +   +L L ++F 
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLILAILGLLLALLLLFL 173

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 65/276 (23%), Positives = 113/276 (40%), Gaps = 13/276 (4%)

Query: 100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159
           G  +GS + G+++D  GR++   L  L   +   ++A + N    L+ R +VG G+G   
Sbjct: 139 GVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIW 198

Query: 160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219
             A +  TE  P   R   G  IQ+   LGL+   L+   + +    WR       +P  
Sbjct: 199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPTF 254

Query: 220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKL--LGGSHVKSSLAELSKL-DRGDDGDIV 276
           +  L   F  ESP WL  +GR  EA    +++  + G  + + +  LS   D        
Sbjct: 255 LFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQY 314

Query: 277 KFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA-GLSSGLANVFVGIANL 335
            F +L    + R   +      L  L    A  Y+   +     G +  L     G+  L
Sbjct: 315 SFLDLFRTPNLRKTTL-----CLMMLWFTTAFSYYGLVLDLGNLGGNIYLDLFISGLVEL 369

Query: 336 LGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLIL 371
              ++ ++L+D+LGR+  +  S     +   + L +
Sbjct: 370 PAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV 405

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 74/343 (21%), Positives = 128/343 (37%), Gaps = 18/343 (5%)

Query: 37  TEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSM 96
                  P  +  +  ++++ L   + GY L  +     +IS + G +   L  G + S 
Sbjct: 3   QNNIRKQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL--GFLFSA 60

Query: 97  CLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG 156
            L G   G+   G +AD +GRRR      L   +   + A   N+  +L+ RF+ G G+G
Sbjct: 61  GLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLG 120

Query: 157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV-SI 215
                    V+E +P   RGT    +     +G      +   +  + G WR  F+V  I
Sbjct: 121 GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-WRSLFYVGGI 179

Query: 216 VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI 275
            P  +L L M F  ES  +L  K    E        +       + + L +         
Sbjct: 180 APLLLLLLLMRFLPESIDFLVSKR--PETVRRIVNAIAPQMQAEAQSALPEQKATQGTKR 237

Query: 276 VKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSS----VFKSAGLSSGLANVFVG 331
             F+ L  G+  R+  +   L+ +  +       YF ++    +    G S  LA     
Sbjct: 238 SVFKALFQGKTARITVLLWLLYFMLLVG-----VYFLTNWLPKLMVELGFSLSLAATGGA 292

Query: 332 IAN---LLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLIL 371
           + N   ++GS++   L D+LG +          V    +   L
Sbjct: 293 LFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTL 335

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 65/322 (20%), Positives = 123/322 (38%), Gaps = 38/322 (11%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIA 112
           + +A   + L    LG        ++ DLG +   +  GL+++    G  +   L+G ++
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLY--LAEDLGISPTEI--GLLLTAFSLGYALAQPLAGRLS 56

Query: 113 DGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP 172
           D  GRRR   +  L   +G  +     +L  +L+ R + G G G     AA  + +  PP
Sbjct: 57  DRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPP 116

Query: 173 FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESP 232
             RG     +     LG     L+G  +  + G WR  F +  + A +  +         
Sbjct: 117 EERGRALGLLSAGFGLGAALGPLLGGLLASLFG-WRAAFLILAILALLAAVLAAL----- 170

Query: 233 HWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292
             L +    ++     E+                        +V   +LL       + +
Sbjct: 171 -LLPRPPPESKRPKPAEEAPAP--------------------LVPAWKLLLRDPVLWLLL 209

Query: 293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMV---LMDKLG 349
              LF         A+  +     +  GLS+ LA + +G+A LLG++  ++   L D+LG
Sbjct: 210 ALLLFGF----AFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLG 265

Query: 350 RKALLQWSFFSMVICSSISLIL 371
           R+  L  +   +++ +    +L
Sbjct: 266 RRRRLLLALLLLILAALGLALL 287

Length = 346

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 64/299 (21%), Positives = 115/299 (38%), Gaps = 65/299 (21%)

Query: 103 IGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT--TRNLIGM------LLGRFVVGTG 154
           +G+ + G   D +GR++   +  L M IG  +     +   IG+      LL R + G  
Sbjct: 50  LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109

Query: 155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG------W-W 207
           +G     AALY+ E +PP  RG YG+F Q+   +GL+ + L  + +  + G      W W
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169

Query: 208 RICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKL 267
           RI F VS V   I         E+P +   + +  +      + L               
Sbjct: 170 RIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIAETLT-------------- 215

Query: 268 DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLAN 327
                            +H +   +G  L      +      Y  + + ++ GLS   AN
Sbjct: 216 -----------------KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLS---AN 255

Query: 328 VFVGIANLLGSVVAMV-------LMDKLGRKALLQWSFFSMVICSSISLILEAFLVLVA 379
             + +  +L  ++  +       L D++GR+         ++I  ++   L A  +L+A
Sbjct: 256 SALLV-LMLSLILFFITIPLSGALSDRIGRRP--------VLIIFTVLAALLAVPLLMA 305

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 38/156 (24%), Positives = 56/156 (35%), Gaps = 1/156 (0%)

Query: 103 IGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVA 162
            G+ + G   D  GRR       +    G          I M + R V+G GMG     +
Sbjct: 62  FGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSS 121

Query: 163 ALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRICFWVSIVPAAIL 221
           A YV E  P  +R      +     +G + +  +   V  + G  WR  F++SI+P    
Sbjct: 122 AAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181

Query: 222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHV 257
                   E+  W  K    A      + L GG H 
Sbjct: 182 LWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHR 217

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 12/169 (7%)

Query: 98  LGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGL 157
           L GA +G    G +AD +GR+R   +      + +  +A   +   +L+ R +  TG+GL
Sbjct: 64  LPGALLG----GRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL--TGVGL 117

Query: 158 G---PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS 214
           G   P + AL  +E   P +RGT  + +      G   + +IG+     A W R  F+V 
Sbjct: 118 GGALPNLIAL-TSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAW-RHIFYVG 175

Query: 215 -IVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLA 262
            + P  ++ L M +  ES  +    G   +       L G     ++L 
Sbjct: 176 GVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLL 224

Length = 406

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 2/129 (1%)

Query: 100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159
           G  I S LSG + D  GR+    +     ++  ++ A + N+  +++ RF+ G G     
Sbjct: 10  GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFAL 69

Query: 160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219
              A  + ++ PP  RG     +     LG +    +G  + +  G WR  F    +  A
Sbjct: 70  VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAI-LA 127

Query: 220 ILCLAMVFC 228
           +    ++  
Sbjct: 128 LAAFILLAF 136

Length = 141

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 38/179 (21%), Positives = 74/179 (41%), Gaps = 2/179 (1%)

Query: 50  FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSG 109
              +L+  L+ FL  +    +   L     ++       A GL++S+   G  +G+ L G
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEA-GLLLSLFGLGGILGALLGG 232

Query: 110 WIADGVGRRRAFQLCALP-MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE 168
            ++D +GRRR   L  L    +G  + A   +L  +L+   ++G G+G          +E
Sbjct: 233 LLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASE 292

Query: 169 VSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227
           ++PP  RGT          LG     L+   + +  G+  +   ++ +      L ++ 
Sbjct: 293 LAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 43/165 (26%), Positives = 64/165 (38%), Gaps = 9/165 (5%)

Query: 77  ISLDLGFN---GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133
           I  DLG     G  LA    +    GGA  G      +AD  GR+       +   +G  
Sbjct: 44  IKADLGLTDMEGAFLATAAFIGRPFGGALFGL-----LADKFGRKPLMMWSIVAYSVGTG 98

Query: 134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGS 193
           +S     +I + L RF+VG GM      A+ Y  E  P  ++    AF+     +G + +
Sbjct: 99  LSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIA 158

Query: 194 LLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
                   E  G WR  F+V ++P  ++        ES  W   K
Sbjct: 159 AYFMPSFAEAYG-WRAAFFVGLLPVLLVIYIRARAPESKEWEEAK 202

Length = 426

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 14/143 (9%)

Query: 91  GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV 150
           G +++    G  +G+ L   +   + RRR         I+   +SA   +   +LL R +
Sbjct: 51  GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110

Query: 151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW---- 206
            G   G+  ++AA     + PP  RG   A   + T  GL  + ++G+P   +  +    
Sbjct: 111 AGLAHGVFWSIAAALAARLVPPGKRG--RALALVFT--GLTLATVLGVP---LGTFLGQL 163

Query: 207 --WRICFWVSIVPAAILCLAMVF 227
             WR  F   I   A+L L +++
Sbjct: 164 FGWRATFLA-IAVLALLALLLLW 185

Length = 394

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score = 44.5 bits (106), Expect = 6e-05
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 21/164 (12%)

Query: 85  GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLI 142
           GN     +++ +    A +G+ L  W+A   G++R F L  L   IG  +       +L 
Sbjct: 254 GNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLW 313

Query: 143 GMLLGRFVVGTGMGLGPTVAALYVTEV-----------SPPFVRGTYGAFIQIATCLGLM 191
             L+   + G G+GL   +    + +V                   Y    ++   LG  
Sbjct: 314 LFLVLVVLAGIGLGLATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLGGALGGA 373

Query: 192 GSLLI--------GIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227
              L+            +  A    I    +++PA +  LA++ 
Sbjct: 374 IVGLLLAFAGYVANATAQSAAALSGIRLLFTLIPAVLALLALLI 417

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 49/212 (23%), Positives = 81/212 (38%), Gaps = 20/212 (9%)

Query: 46  WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGF-NGNTLAEGLVVSMCLGGAFIG 104
           W L F    V  L+    G  + VV   L S   DL   +      GL+V +   G  +G
Sbjct: 166 WALFF----VLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYL---GMMVG 218

Query: 105 STLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAAL 164
           +   G +AD +GR++   +C       A  S+  +     L  R + G G+G    +   
Sbjct: 219 AFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFS 278

Query: 165 YVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW------------WRICFW 212
           Y  E      RG + +++ +   +G + +  +   +    GW            WR+   
Sbjct: 279 YFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVI 338

Query: 213 VSIVPAAILCLAMVFCAESPHWLYKKGRTAEA 244
           V   P      A+ F  ESP +  + G+  EA
Sbjct: 339 VCAFPCVFAIGALTFMPESPRFFLENGKHDEA 370

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 5/142 (3%)

Query: 51  PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGW 110
             VL   L+  LFG+    +   L      LG +   L  GL++ +      IG  L G 
Sbjct: 202 DPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLS--ALLAGLLLGLAGLLGAIGRLLLGR 259

Query: 111 IADGVGRRRAFQLCALPMIIGA---SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVT 167
           ++D +GRRR   L  L +I+ A   ++ + T + + +L+   ++G G GL        V+
Sbjct: 260 LSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVS 319

Query: 168 EVSPPFVRGTYGAFIQIATCLG 189
           +++P   RGT       A  LG
Sbjct: 320 DLAPKEERGTASGLYNTAGSLG 341

Length = 346

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 1/125 (0%)

Query: 103 IGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVA 162
           I   L+GW+A   G RR F +      +G+ +     NL  M++ R + G G G    ++
Sbjct: 52  ISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLS 111

Query: 163 ALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC 222
              +  + PP  RG   A   +   +       +G  + E    WR  F +++    I+ 
Sbjct: 112 FSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIFLINVPIGIIVV 170

Query: 223 LAMVF 227
           +   F
Sbjct: 171 VVAFF 175

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 17/157 (10%)

Query: 83  FNGNTLAEGLVVSMCLGGAFIGSTL-SGWIADGVGRRRAFQLCALPMIIGASISATTR-- 139
           F    L++ L+V++ +G      T  + ++ D  GRR    L A  M I   +       
Sbjct: 280 FETLGLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLG 339

Query: 140 --------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLM 191
                    +  + +  F+    +G GP V  + V+E+ P  VR      + IAT    +
Sbjct: 340 VAKSKGAGIVAIVFILLFIAFFALGWGP-VPWVIVSELFPLGVRP---KAMAIATAANWL 395

Query: 192 GSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC 228
            + LIG     I G   I  +V +V A +L L ++F 
Sbjct: 396 ANFLIGFLFPIITG--AIGGYVFLVFAGLLVLFILFV 430

Length = 449

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 83  FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTR 139
           F+       L+     GG FI S  +G +   +G +    L  L   +GA++   +A+++
Sbjct: 43  FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK 102

Query: 140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP 172
           +    L+  F++ +G+GL  T A  YVT +  P
Sbjct: 103 SYGFFLVALFILASGIGLLETAANPYVTLLGKP 135

Length = 422

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	379
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	99.98
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.98
PRK09952	438	shikimate transporter; Provisional	99.98
PRK10091	382	MFS transport protein AraJ; Provisional	99.98
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.98
PRK11663	434	regulatory protein UhpC; Provisional	99.97
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.97
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.97
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.97
PLN00028	476	nitrate transmembrane transporter; Provisional	99.97
PRK15075	434	citrate-proton symporter; Provisional	99.97
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.97
PRK03699	394	putative transporter; Provisional	99.97
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.97
PRK10133	438	L-fucose transporter; Provisional	99.97
TIGR00893	399	2A0114 d-galactonate transporter.	99.97
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.97
TIGR00900	365	2A0121 H+ Antiporter protein.	99.97
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.97
PRK10504	471	putative transporter; Provisional	99.97
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.97
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.97
TIGR00895	398	2A0115 benzoate transport.	99.97
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.97
PRK03893	496	putative sialic acid transporter; Provisional	99.97
PRK03633	381	putative MFS family transporter protein; Provision	99.96
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.96
KOG2533	495	consensus Permease of the major facilitator superf	99.96
PRK11043	401	putative transporter; Provisional	99.96
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.96
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.96
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.96
PRK05122	399	major facilitator superfamily transporter; Provisi	99.96
TIGR00805	633	oat sodium-independent organic anion transporter.	99.96
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.96
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.96
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.96
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.96
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.96
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.96
PRK12382	392	putative transporter; Provisional	99.96
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.96
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.96
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.96
PRK09874	408	drug efflux system protein MdtG; Provisional	99.95
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.95
KOG2532	466	consensus Permease of the major facilitator superf	99.95
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.95
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.95
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.95
PRK10489	417	enterobactin exporter EntS; Provisional	99.95
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.95
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.95
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.95
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.94
PRK11010	491	ampG muropeptide transporter; Validated	99.94
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.94
PRK10054	395	putative transporter; Provisional	99.94
PRK15011	393	sugar efflux transporter B; Provisional	99.94
TIGR00901	356	2A0125 AmpG-related permease.	99.93
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.93
PRK11902	402	ampG muropeptide transporter; Reviewed	99.93
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.93
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.93
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.93
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.92
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.92
PRK09528	420	lacY galactoside permease; Reviewed	99.91
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.91
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.91
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.89
KOG2615	451	consensus Permease of the major facilitator superf	99.89
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.89
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.88
PTZ00207	591	hypothetical protein; Provisional	99.88
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.88
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.86
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.86
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.83
KOG2563	480	consensus Permease of the major facilitator superf	99.81
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.8
PRK10642	490	proline/glycine betaine transporter; Provisional	99.78
PF13347	428	MFS_2: MFS/sugar transport protein	99.78
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.78
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.77
PRK09669	444	putative symporter YagG; Provisional	99.75
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.74
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.74
PRK10429	473	melibiose:sodium symporter; Provisional	99.72
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.71
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.71
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.7
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.7
PRK09848	448	glucuronide transporter; Provisional	99.69
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.69
PRK11462	460	putative transporter; Provisional	99.68
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.67
KOG3626	735	consensus Organic anion transporter [Secondary met	99.66
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.65
PRK15011	393	sugar efflux transporter B; Provisional	99.65
PRK09528	420	lacY galactoside permease; Reviewed	99.64
COG2211	467	MelB Na+/melibiose symporter and related transport	99.64
PRK05122	399	major facilitator superfamily transporter; Provisi	99.64
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.63
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.63
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.63
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.61
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.61
KOG0569	485	consensus Permease of the major facilitator superf	99.61
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.6
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.59
PRK12382	392	putative transporter; Provisional	99.59
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.57
PRK09874	408	drug efflux system protein MdtG; Provisional	99.56
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.55
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.55
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.55
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.54
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.54
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.54
TIGR00893	399	2A0114 d-galactonate transporter.	99.54
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.54
PRK09952	438	shikimate transporter; Provisional	99.52
PRK10489	417	enterobactin exporter EntS; Provisional	99.52
PRK03633	381	putative MFS family transporter protein; Provision	99.51
TIGR00895	398	2A0115 benzoate transport.	99.51
PRK03699	394	putative transporter; Provisional	99.51
PRK09705	393	cynX putative cyanate transporter; Provisional	99.5
PRK03545	390	putative arabinose transporter; Provisional	99.5
TIGR00891	405	2A0112 putative sialic acid transporter.	99.5
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.49
TIGR00898	505	2A0119 cation transport protein.	99.49
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.47
PRK03893	496	putative sialic acid transporter; Provisional	99.46
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.45
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.45
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.44
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.42
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.41
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.41
TIGR00900	365	2A0121 H+ Antiporter protein.	99.4
PRK11663	434	regulatory protein UhpC; Provisional	99.39
PRK10504	471	putative transporter; Provisional	99.38
PRK11010	491	ampG muropeptide transporter; Validated	99.38
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.38
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.37
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.37
PRK12307	426	putative sialic acid transporter; Provisional	99.37
PRK15075	434	citrate-proton symporter; Provisional	99.36
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.34
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.34
PRK10054	395	putative transporter; Provisional	99.33
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.32
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.31
PLN00028	476	nitrate transmembrane transporter; Provisional	99.31
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.29
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.28
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.28
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.27
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.26
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.26
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.25
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.25
PRK10091	382	MFS transport protein AraJ; Provisional	99.24
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.23
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.23
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.21
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.21
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.2
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.2
PRK11902	402	ampG muropeptide transporter; Reviewed	99.18
PRK09848	448	glucuronide transporter; Provisional	99.18
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.18
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.18
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.17
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.16
TIGR00901	356	2A0125 AmpG-related permease.	99.15
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.14
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.14
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.13
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.12
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.12
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.11
PRK10429	473	melibiose:sodium symporter; Provisional	99.11
COG0477	338	ProP Permeases of the major facilitator superfamil	99.1
KOG0637	498	consensus Sucrose transporter and related proteins	99.07
PRK09669	444	putative symporter YagG; Provisional	99.07
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.07
PF13347	428	MFS_2: MFS/sugar transport protein	99.07
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.05
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.04
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.04
KOG0254	513	consensus Predicted transporter (major facilitator	99.03
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.02
PRK10133	438	L-fucose transporter; Provisional	99.01
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.99
PRK11043	401	putative transporter; Provisional	98.99
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.98
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.97
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.96
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.9
KOG2532	466	consensus Permease of the major facilitator superf	98.9
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.88
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.88
COG2211	467	MelB Na+/melibiose symporter and related transport	98.87
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.82
KOG3762	618	consensus Predicted transporter [General function	98.82
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.79
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.77
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.77
PRK11462	460	putative transporter; Provisional	98.75
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.68
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.67
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.66
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.66
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.58
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.56
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.52
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.49
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.43
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.38
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.36
PF12832	77	MFS_1_like: MFS_1 like family	98.32
COG3202	509	ATP/ADP translocase [Energy production and convers	98.3
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.27
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.25
KOG3810	433	consensus Micronutrient transporters (folate trans	98.19
KOG2533	495	consensus Permease of the major facilitator superf	98.16
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.15
PTZ00207	591	hypothetical protein; Provisional	98.11
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.08
KOG2615	451	consensus Permease of the major facilitator superf	98.03
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.97
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.97
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.84
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.78
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.65
PF12832	77	MFS_1_like: MFS_1 like family	97.6
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.46
PRK03612	521	spermidine synthase; Provisional	97.29
KOG3097	390	consensus Predicted membrane protein [Function unk	97.25
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.14
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.09
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	96.92
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	96.9
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.9
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	96.89
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.86
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.77
KOG1330	493	consensus Sugar transporter/spinster transmembrane	96.71
KOG3762	618	consensus Predicted transporter [General function	96.53
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.45
KOG2563	480	consensus Permease of the major facilitator superf	96.34
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.2
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	95.98
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.76
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	95.76
TIGR00805	633	oat sodium-independent organic anion transporter.	95.32
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	95.31
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.29
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	94.98
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	93.63
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	93.46
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	92.86
KOG2881	294	consensus Predicted membrane protein [Function unk	92.39
KOG0637	498	consensus Sucrose transporter and related proteins	92.26
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	88.1
KOG3880	409	consensus Predicted small molecule transporter inv	88.09
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	86.52
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	86.48
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	86.43
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	82.34
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	82.25
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	81.28

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=1.1e-34  Score=272.87  Aligned_cols=206  Identities=20%  Similarity=0.269  Sum_probs=184.8

Q ss_pred             chhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhH
Q 016986           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (379)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~  126 (379)
                      +..|..++++.++.+..+++...++..+|.+.++++++..+.  +++.+++.++.+++++++|+++||+|||++++++++
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~--g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li  240 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGK--GMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS  240 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            456777778888888888988889999999999999987666  899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccccc---
Q 016986          127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI---  203 (379)
Q Consensus       127 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---  203 (379)
                      +.+++.++++++++++.++++|++.|++.|+..+....+++|++|+++|++.+++...+..+|.++++.++..+...   
T Consensus       241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~  320 (742)
T TIGR01299       241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW  320 (742)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998766544322   


Q ss_pred             ----------chhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCC
Q 016986          204 ----------AGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGS  255 (379)
Q Consensus       204 ----------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~  255 (379)
                                .+ ||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++...+
T Consensus       321 ~~~~g~~~~~~g-WR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n  381 (742)
T TIGR01299       321 SFQMGSAYQFHS-WRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN  381 (742)
T ss_pred             hhcccccccccc-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence                      24 9999999888888887778889999999999999999998888876554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2e-34  Score=247.64  Aligned_cols=288  Identities=21%  Similarity=0.248  Sum_probs=252.0

Q ss_pred             hHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHH
Q 016986           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (379)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  128 (379)
                      .+..++.+.++.|..+....+....+|++.+|+|+|....  |+..|+|.++..++.|+...+.||+.||++++..+.++
T Consensus        11 ~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~a--G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF   88 (394)
T COG2814          11 MWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAA--GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF   88 (394)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            3566777888888888888899999999999999998888  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhH
Q 016986          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (379)
Q Consensus       129 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr  208 (379)
                      .++++++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|..+|.++.+..| ||
T Consensus        89 i~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G-WR  167 (394)
T COG2814          89 IVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG-WR  167 (394)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh-HH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHHHHH-hhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccch
Q 016986          209 ICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (379)
Q Consensus       209 ~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (379)
                      +.|+..+..+++..+.. ..+|  |+     +.                           +++...+..+..+.+|+|..
T Consensus       168 ~~F~~ia~l~ll~~~~~~~~lP--~~-----~~---------------------------~~~~~~~~~~~~~~l~~p~v  213 (394)
T COG2814         168 ATFLAIAVLALLALLLLWKLLP--PS-----EI---------------------------SGSLPGPLRTLLRLLRRPGV  213 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC--Cc-----cC---------------------------CCCCCcchhHHHHHhcCchH
Confidence            99999888887776654 4577  11     00                           00111122345567899999


Q ss_pred             hHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHH
Q 016986          288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSI  367 (379)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~  367 (379)
                      +..++..++.....+..++++..++.+..+.+....++....++++.++|+.++|++.|| +.|+.+.....+..+..+.
T Consensus       214 ~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~  292 (394)
T COG2814         214 LLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLA  292 (394)
T ss_pred             HHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHH
Confidence            999999999999989988888888888877777778899999999999999999999999 8888888887777777777


Q ss_pred             HHHHHHh
Q 016986          368 SLILEAF  374 (379)
Q Consensus       368 ~~~~~~~  374 (379)
                      +.+..+.
T Consensus       293 l~~~~~~  299 (394)
T COG2814         293 LTFTGAS  299 (394)
T ss_pred             HHHhcch
Confidence            6665544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.6e-34  Score=244.82  Aligned_cols=307  Identities=15%  Similarity=0.095  Sum_probs=250.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhH
Q 016986           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (379)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~  126 (379)
                      +.+++.++.+++++...++.+..++...|.+.+|.++|.++.  |++.+.+.++|.++.++.|.++||.++|..+..+++
T Consensus        25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~l--G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLi  102 (448)
T COG2271          25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQL--GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLI  102 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHH
Confidence            445788888999999999999999999999999999988887  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhc--ccccccc
Q 016986          127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG--IPVKEIA  204 (379)
Q Consensus       127 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~l~~~~  204 (379)
                      +.++.+++++++++.+.+.+.-+++|..+|...|.+...++.|++++|||+..++++++.++|..+.|++.  +.+..+.
T Consensus       103 lsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~  182 (448)
T COG2271         103 LSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG  182 (448)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999998888888  7777777


Q ss_pred             hhhHHHHHHHHHHHHHHHHH-HhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcC-CCCCcchhhhhh
Q 016986          205 GWWRICFWVSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRG-DDGDIVKFEELL  282 (379)
Q Consensus       205 ~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  282 (379)
                      + ||..|++.++++++..+. ++..+|+|+..-. +..++..++       ....   . .++.+.+ -.....-.+-++
T Consensus       183 ~-w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL-P~ie~~~~d-------~~e~---~-~~~~~~~~ls~~~i~~~YVL  249 (448)
T COG2271         183 G-WRAAFYFPGIIAIIVALILLFLLRDRPQSEGL-PPIEEYRGD-------PLEI---Y-EEEKENEGLTAWQIFVKYVL  249 (448)
T ss_pred             c-hhHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CCHHHhhcC-------chhh---h-hhhccCCCccHHHHHHHHHH
Confidence            7 999999988887776555 4557888752110 111111100       0000   0 0000000 111122345678


Q ss_pred             cccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhh--CchHHHHHH-HH
Q 016986          283 YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL--GRKALLQWS-FF  359 (379)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~-~~  359 (379)
                      +||..|.+.+..++....-+....|.|.|+.+..+.+..+++.....+-.++++|.+++|+++||+  |||.+..+. ++
T Consensus       250 ~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~  329 (448)
T COG2271         250 KNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFML  329 (448)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHH
Confidence            999999999999999999999999999999999898888899999999999999999999999996  677665544 33


Q ss_pred             HHHHHHHHH
Q 016986          360 SMVICSSIS  368 (379)
Q Consensus       360 ~~~i~~~~~  368 (379)
                      +..++....
T Consensus       330 ~i~~~~~~~  338 (448)
T COG2271         330 LITASLVLY  338 (448)
T ss_pred             HHHHHHHHH
Confidence            434433333

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=1e-32  Score=254.84  Aligned_cols=317  Identities=12%  Similarity=0.027  Sum_probs=245.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHH
Q 016986           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (379)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~  127 (379)
                      ++|..+..++++.++..++.+.++..+|.+.+|+|.+.++.  +|+.++|.++..++.+++|+++||+|||++++.+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~--~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~   80 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNEL--LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTL   80 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            34678888999999999999999999999999999988777  8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhc-CCCcchhHHHHHHHHHHHHHHHHHhhcccccccchh
Q 016986          128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW  206 (379)
Q Consensus       128 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  206 (379)
                      +.++++++++++|++.++++|+++|+|.+...+.....+.+.+ |+++|+++++++.....+|..+||.+++.+.++.+ 
T Consensus        81 ~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g-  159 (495)
T PRK14995         81 FGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY-  159 (495)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-
Confidence            9999999999999999999999999999999988888887776 67999999999999999999999999999999988 


Q ss_pred             hHHHHHHHHHHHHHHHHH-HhhcCCChhHHHHcCChHHHHHH------------HHHHhCCCchh-HH----------HH
Q 016986          207 WRICFWVSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAE------------FEKLLGGSHVK-SS----------LA  262 (379)
Q Consensus       207 wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~----------~~  262 (379)
                      |||.|++.....++.+++ .+++||+++..  +++.+.....            .+......... ..          ..
T Consensus       160 wr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  237 (495)
T PRK14995        160 WGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLG  237 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Confidence            999999977666665444 45567764311  1111110000            00000000000 00          00


Q ss_pred             HHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 016986          263 ELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAM  342 (379)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  342 (379)
                      .....+.. ...+.-..+++++|.+....+..++.....+....+.+.|++..++.+..++|....+..++..++.++.|
T Consensus       238 ~f~~~e~~-~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g  316 (495)
T PRK14995        238 LFIRTQLA-ASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAG  316 (495)
T ss_pred             HHHHHHhc-CCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00001111 12222235688999888777777666666666666778888888888888889999999999999999999


Q ss_pred             HHHHhhCchHHHHHHHHHHHHHHHHHHH
Q 016986          343 VLMDKLGRKALLQWSFFSMVICSSISLI  370 (379)
Q Consensus       343 ~l~d~~g~~~~~~~~~~~~~i~~~~~~~  370 (379)
                      ++.||+|+|+.+..+..+..++..++..
T Consensus       317 ~l~~r~g~~~~~~~g~~~~~~~~~~l~~  344 (495)
T PRK14995        317 ILVSRLGLRLVATGGMALSALSFYGLAM  344 (495)
T ss_pred             HHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888888777776655543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=2.6e-32  Score=251.98  Aligned_cols=290  Identities=17%  Similarity=0.204  Sum_probs=208.0

Q ss_pred             HHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhH--HHH--HHHHHHHHHHHHHHhHHhhhccchhHHHHHHHh
Q 016986           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLA--EGL--VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA  125 (379)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~--~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~  125 (379)
                      ++.+....+++++++++...++...|.+.++++.+.++..  .+.  +.++.+++..++++++|+++||+|||+++..++
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            3466677889999999999999999999999976543321  111  257788999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccchHH--------HHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhc
Q 016986          126 LPMIIGASISATTRNLIG--------MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG  197 (379)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  197 (379)
                      ++++++++++++++|+++        ++++|+++|++.|..++...++++|++|+++|+++.++...+..+|..+++.+.
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999875        788999999999999999999999999999999999999988888888877655


Q ss_pred             cccc--------ccchhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhc
Q 016986          198 IPVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDR  269 (379)
Q Consensus       198 ~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (379)
                      ..+.        ...| ||+.|++.+++.++.+++...+||+|++...+++.++..+                     +.
T Consensus       175 ~~~~~~~~~~~~~~~g-WR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~---------------------~~  232 (490)
T PRK10642        175 VLISTIVGEANFLDWG-WRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR---------------------EG  232 (490)
T ss_pred             HHHHHhcCHHHhcCcc-HHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc---------------------cc
Confidence            4332        2456 9999999877666555555678999876433221111000                     00


Q ss_pred             CCCCCcchhhhhhcccchhHHHHH---HHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 016986          270 GDDGDIVKFEELLYGRHFRVVFIG---STLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMD  346 (379)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  346 (379)
                      ..+.+..++++++++ +.+.....   .++....++....+.|.|+...++.+....+.......++.+++.++.|+++|
T Consensus       233 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d  311 (490)
T PRK10642        233 LQDGPKVSFKEIATK-HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSD  311 (490)
T ss_pred             ccccccCCHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            001112345566653 22222211   12222333444455666655444433333455666777888899999999999


Q ss_pred             hhCchHHHHHHHHHHH
Q 016986          347 KLGRKALLQWSFFSMV  362 (379)
Q Consensus       347 ~~g~~~~~~~~~~~~~  362 (379)
                      |+|||+.+..+.+.+.
T Consensus       312 r~grr~~~~~~~~~~~  327 (490)
T PRK10642        312 RFGRRPFVILGSVALF  327 (490)
T ss_pred             HhccHHHHHHHHHHHH
Confidence            9999998877665433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.3e-31  Score=235.65  Aligned_cols=323  Identities=33%  Similarity=0.564  Sum_probs=262.0

Q ss_pred             HHHHHHHHHHHHHHhhhhccccchhhhhh--------hhcc--CCcc--hhHHHHHHHHHHHHHHHHHHhHHhhhccchh
Q 016986           50 FPHVLVATLSSFLFGYHLGVVNEPLESIS--------LDLG--FNGN--TLAEGLVVSMCLGGAFIGSTLSGWIADGVGR  117 (379)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~--~~~~--~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Gr  117 (379)
                      ......+.++.+-.++....+++..+.+.        +.+|  ++++  +..++.+.+++.+|.++|+++.|+++||+||
T Consensus        10 ~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GR   89 (485)
T KOG0569|consen   10 LLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGR   89 (485)
T ss_pred             HHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            33444455555777888888888765443        3445  2322  2335889999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHhc---ccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHH
Q 016986          118 RRAFQLCALPMIIGASISAT---TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL  194 (379)
Q Consensus       118 r~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~  194 (379)
                      |..++++.++..++.++..+   .+++++++++|++.|+..|........|+.|..|.+.||....+.+.+..+|.+++.
T Consensus        90 K~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~  169 (485)
T KOG0569|consen   90 KNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQ  169 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHH
Confidence            99999998888888777655   478999999999999999999999999999999999999999999999999999997


Q ss_pred             hhcc-cccccchhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHH-cCChHHHHHHHHHHhCCCchhHHHHHHHh---hhc
Q 016986          195 LIGI-PVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYK-KGRTAEAEAEFEKLLGGSHVKSSLAELSK---LDR  269 (379)
Q Consensus       195 ~~~~-~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  269 (379)
                      .++. .+......|++.+.+..+++++.++...++||+|+|+.. +++.+++++.++..++..+.+.+.++..+   .++
T Consensus       170 ~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~  249 (485)
T KOG0569|consen  170 VLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEE  249 (485)
T ss_pred             HHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhc
Confidence            7654 233233339999999999999999999999999999988 78899999999999998876555444332   222


Q ss_pred             CCCCCcchhhhhhcccchhH-HHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChh---HHHHHHHHHHHHHHHHHHHHH
Q 016986          270 GDDGDIVKFEELLYGRHFRV-VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLM  345 (379)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~  345 (379)
                      .++.+..+++++++++..+. ..+...+.....+.+.+...+|...++...+.+..   +.....++..++..+++.++.
T Consensus       250 ~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~li  329 (485)
T KOG0569|consen  250 LEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLI  329 (485)
T ss_pred             cccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33346778999999987665 45566667777788888899999999988877643   788888999999999999999


Q ss_pred             HhhCchHHHHHHHHHHHHHHHHHHHHH
Q 016986          346 DKLGRKALLQWSFFSMVICSSISLILE  372 (379)
Q Consensus       346 d~~g~~~~~~~~~~~~~i~~~~~~~~~  372 (379)
                      ||.|||++++.++.++.+..+++....
T Consensus       330 d~~gRRpLll~~~~~~~~~~~~~~~~~  356 (485)
T KOG0569|consen  330 DRLGRRPLLLISLSLMAVALLLMSIAL  356 (485)
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998888776653

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=2.8e-32  Score=245.28  Aligned_cols=277  Identities=17%  Similarity=0.196  Sum_probs=214.5

Q ss_pred             hHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHH
Q 016986           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (379)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  128 (379)
                      +|..+..+.++.+..........+.+|.+.+++|.+.++.  +++.+++.+++.+++++.|+++||+|||+++..+.++.
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   84 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQV--GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF   84 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            3444555555555544444455677899999999988777  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhH
Q 016986          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (379)
Q Consensus       129 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr  208 (379)
                      +++++++++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++.+.+..+ ||
T Consensus        85 ~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g-w~  163 (390)
T PRK03545         85 IASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG-WR  163 (390)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc-HH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888878 99


Q ss_pred             HHHHHHHHHHHHHHHHH-hhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccch
Q 016986          209 ICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (379)
Q Consensus       209 ~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (379)
                      +.|++.++..++..+.. .++||+|+     ++. +                              ...+.++.++++.+
T Consensus       164 ~~f~~~~~~~~l~~~~~~~~~~~~~~-----~~~-~------------------------------~~~~~~~~~~~~~~  207 (390)
T PRK03545        164 TTFLAIGGGALITLLLLIKLLPLLPS-----EHS-G------------------------------SLKSLPLLFRRPAL  207 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCC-----CCc-c------------------------------hHHHHHHHHhCcHH
Confidence            99999877766654443 34565431     000 0                              01124567788887


Q ss_pred             hHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Q 016986          288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICS  365 (379)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~  365 (379)
                      +......++.....+....+.+.|..+..+.+....+......+++.++++++.+++.||+++|... .+..+..++.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~  284 (390)
T PRK03545        208 VSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCL  284 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHH
Confidence            7655555444444444445555555554555555677788888899999999999999999987654 3443333433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=4.4e-32  Score=251.35  Aligned_cols=322  Identities=17%  Similarity=0.206  Sum_probs=223.0

Q ss_pred             cchhHHHHHHHHHHHHHHhhhhccccchhhhhhhhc-c--CCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHH
Q 016986           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDL-G--FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ  122 (379)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~--~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~  122 (379)
                      .+..++.+.++.++.+.++++...++...|.+.+++ +  ...+....+++.+.+.++..++++++|+++||+|||+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~   90 (502)
T TIGR00887        11 GWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYG   90 (502)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            345567778888899999999999999999887753 1  1122333489999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHhcccc------hHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhh
Q 016986          123 LCALPMIIGASISATTRN------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI  196 (379)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  196 (379)
                      .++++..++.++++++++      ++.++++|+++|++.|...+....+++|++|+++|++++++.+....+|.++++.+
T Consensus        91 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~  170 (502)
T TIGR00887        91 MELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIV  170 (502)
T ss_pred             HHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999888876      78899999999999999999999999999999999999999999999999888887


Q ss_pred             cccccc-----------------------cchhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChH-HHHHHHHHHh
Q 016986          197 GIPVKE-----------------------IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTA-EAEAEFEKLL  252 (379)
Q Consensus       197 ~~~l~~-----------------------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~-~~~~~~~~~~  252 (379)
                      +..+..                       ..+ ||+.|.+.+++.++..+..+++||+|+|+..+++.+ ++.+...+..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~  249 (502)
T TIGR00887       171 ALIVLAGFKHSLEAAADEASCTGSCVPAVDYM-WRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVL  249 (502)
T ss_pred             HHHHHHHhccccccccccccccccccchhccc-HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHh
Confidence            654321                       124 999999888888887777888999999998877764 3454444443


Q ss_pred             CCCchhHHHHHHHhhhcCCCCCcchhhhhhccc---chhHHHHH-HHH---HHHHHhhchhHHHHhHHHHHHHcCCChh-
Q 016986          253 GGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR---HFRVVFIG-STL---FALQQLSGINAIFYFSSSVFKSAGLSSG-  324 (379)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  324 (379)
                      ..+... +.++.++.++.++....+++++++++   +.+...+. ...   .....+....+.|.++.. .+......+ 
T Consensus       250 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~  327 (502)
T TIGR00887       250 QVKIEA-EPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATN  327 (502)
T ss_pred             cccccc-CcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccch
Confidence            221110 00111111111111123577777532   22122221 111   111222222233333322 222211111 


Q ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Q 016986          325 -----------LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLI  370 (379)
Q Consensus       325 -----------~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~  370 (379)
                                 .......++.+++.+++++++||+|||+++.++..++.+++.++.+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~  384 (502)
T TIGR00887       328 NAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGF  384 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence                       0233445567778899999999999999988887776666555543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=2.7e-31  Score=245.70  Aligned_cols=316  Identities=29%  Similarity=0.500  Sum_probs=226.0

Q ss_pred             hhHHHHHHHHHHHHHHhhhhccccchhhhhhhhc--------cCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHH
Q 016986           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDL--------GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR  119 (379)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~  119 (379)
                      ...+..+++.++.+.++++...+++..|.+++++        +.+..+.  +++.+++.++..++++++|+++||+|||+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~ig~~~~~~~~G~l~dr~Grr~   86 (479)
T PRK10077          9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLL--GFCVASALIGCIIGGALGGYCSNRFGRRD   86 (479)
T ss_pred             HHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            3466777778889999999999999999998888        5555554  89999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHhcc------------cchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 016986          120 AFQLCALPMIIGASISATT------------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATC  187 (379)
Q Consensus       120 ~l~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  187 (379)
                      +++.+.+++.++.++++++            +++..++++|+++|++.|...+...++++|++|+++|++++++.+.+..
T Consensus        87 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~  166 (479)
T PRK10077         87 SLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII  166 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHH
Confidence            9999999999988887763            2356788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccc--------ccchhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhH
Q 016986          188 LGLMGSLLIGIPVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKS  259 (379)
Q Consensus       188 ~g~~~~~~~~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (379)
                      +|.++++.+++.+.        +..+ ||+.|++.++..++..+..+++||+|+++..+++.++..+..++.........
T Consensus       167 ~G~~~~~~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~  245 (479)
T PRK10077        167 FGQLVVYFVNYFIARSGDASWLNTDG-WRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQ  245 (479)
T ss_pred             HHHHHHHHHHHHHhccCcccccccCC-hHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHH
Confidence            99998887765442        3345 99999998888777766677899999988777776666555554433322221


Q ss_pred             HHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCC---hhHHHHHHHHHHHH
Q 016986          260 SLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLL  336 (379)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  336 (379)
                      ..++..+....+..   ..+..+. ..............+..........+|.+...+..+.+   ........++..++
T Consensus       246 ~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i  321 (479)
T PRK10077        246 ALQEIKHSLDHGRK---TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLT  321 (479)
T ss_pred             HHHHHHHHHHHhhh---hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence            11111111000000   0011111 00111111111112222222333445555555544432   34566677888999


Q ss_pred             HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Q 016986          337 GSVVAMVLMDKLGRKALLQWSFFSMVICSSISLI  370 (379)
Q Consensus       337 ~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~  370 (379)
                      +.+++++++||+|||+.+..+.+++.++.+++..
T Consensus       322 ~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~  355 (479)
T PRK10077        322 FTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT  355 (479)
T ss_pred             HHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHH
Confidence            9999999999999999999888888887766544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=1.7e-32  Score=247.57  Aligned_cols=298  Identities=15%  Similarity=0.128  Sum_probs=219.5

Q ss_pred             hhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHH
Q 016986           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (379)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~  127 (379)
                      .+|+.+..+++..++++++...++...|.+.+|+|++.++.  +++.+++.+++++++++.|+++||+|||+++..++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~   82 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMF--GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVL   82 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHH
Confidence            45778888888889999999999999999999999987777  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccc-----
Q 016986          128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-----  202 (379)
Q Consensus       128 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-----  202 (379)
                      ++++++++++++|++++++.|+++|++.+...+....++.|++|+++|++++++++.+..+|..+++.+++.+.+     
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  162 (412)
T TIGR02332        83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM  162 (412)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999887753     


Q ss_pred             -cchhhHHHHHHHHHHHHHHHH-HHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHH-hhhcCCCCCcchhh
Q 016986          203 -IAGWWRICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELS-KLDRGDDGDIVKFE  279 (379)
Q Consensus       203 -~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  279 (379)
                       ..+ ||+.|++.++..++..+ ..+++||+|+..  +.-.++.++...+........  .++.+ ..++........++
T Consensus       163 ~~~g-wr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  237 (412)
T TIGR02332       163 ALKG-WQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLT--LEQPEGAFAHAAMPQRSMLR  237 (412)
T ss_pred             Cccc-hhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhcccc--ccccccccccccccHHHHHH
Confidence             245 99999998777665544 446678887421  000011111111100000000  00000 00000000012234


Q ss_pred             hhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHH-HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHH
Q 016986          280 ELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSV-FKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKAL  353 (379)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~  353 (379)
                      +++ ++.++...+..++.....+....+.|.|+.+. .+.+..+.+.......++.+++.++.|+++||+++|+.
T Consensus       238 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~  311 (412)
T TIGR02332       238 EIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH  311 (412)
T ss_pred             Hhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence            444 46666655555555555555566666666542 12233456677888999999999999999999987764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=7.2e-32  Score=245.47  Aligned_cols=280  Identities=18%  Similarity=0.109  Sum_probs=203.6

Q ss_pred             hhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccC---Ccchh-HHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHH
Q 016986           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGF---NGNTL-AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL  123 (379)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~-~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~  123 (379)
                      +++..+...+++.+++.++...++...|.+.++++.   +..+. +.+.+.++.+++..++++++|+++||+|||+++..
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            345567777788999999999999999999999863   32222 11223344445555999999999999999999999


Q ss_pred             HhHHHHHHHHHHhcccchH--------HHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHh
Q 016986          124 CALPMIIGASISATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLL  195 (379)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  195 (379)
                      +.++++++++++++++++.        .++++|+++|++.|..++...++++|++|+++|+++.++.+.+...|.++++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~  178 (432)
T PRK10406         99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL  178 (432)
T ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999875        58889999999999999999999999999999999999999888888888877


Q ss_pred             hccccc--------ccchhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhh
Q 016986          196 IGIPVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKL  267 (379)
Q Consensus       196 ~~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (379)
                      +...+.        ...| ||+.|++.+++.++........||+|++..      +  +                     
T Consensus       179 ~~~~~~~~~~~~~~~~~g-Wr~~F~i~~~~~ll~~~~~~~~~e~~~~~~------~--~---------------------  228 (432)
T PRK10406        179 VVVVLQQTLEDAELREWG-WRIPFALGAVLAVVALWLRRQLDETSQQET------R--A---------------------  228 (432)
T ss_pred             HHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHhcCCCCchHHH------h--h---------------------
Confidence            654443        1346 999999988877766555555677653210      0  0                     


Q ss_pred             hcCCCCCcchhhhhhcccchhHHHHHHHHH-HHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 016986          268 DRGDDGDIVKFEELLYGRHFRVVFIGSTLF-ALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMD  346 (379)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  346 (379)
                       ..   +..+++++++++..+...+...+. ....+....+.|.|+.+.++.+..+.+.......++..++.++.|+++|
T Consensus       229 -~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~D  304 (432)
T PRK10406        229 -LK---EAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSD  304 (432)
T ss_pred             -hc---ccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             00   012466777777766554443332 3334444555666655444433334456666667777888889999999


Q ss_pred             hhCchHHHHHHHHHH
Q 016986          347 KLGRKALLQWSFFSM  361 (379)
Q Consensus       347 ~~g~~~~~~~~~~~~  361 (379)
                      |++||+.+.++.++.
T Consensus       305 r~grr~~~~~~~~~~  319 (432)
T PRK10406        305 KIGRRTSMLCFGSLA  319 (432)
T ss_pred             HcCchHHHHHHHHHH
Confidence            999998776655443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=5.6e-31  Score=243.70  Aligned_cols=322  Identities=31%  Similarity=0.578  Sum_probs=229.7

Q ss_pred             chhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCC------cchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHH
Q 016986           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFN------GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA  120 (379)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~  120 (379)
                      ++.+...+++.++.++..++...+++..|.+..+++.+      .+..+.+++.+++.++..++++++|+++||+|||++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~  103 (481)
T TIGR00879        24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS  103 (481)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH
Confidence            33445555666677778888888899999999998887      334445999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHhcc---cchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhc
Q 016986          121 FQLCALPMIIGASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG  197 (379)
Q Consensus       121 l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  197 (379)
                      ++.+.++..++.+++.+.   .+++.+++.|+++|++.+...+....+++|++|+++|++++++++.+..+|..+++.++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       104 LLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999888554   44568999999999999999999999999999999999999999999999999999998


Q ss_pred             ---ccccccchhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHH----HHh-hhc
Q 016986          198 ---IPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAE----LSK-LDR  269 (379)
Q Consensus       198 ---~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~  269 (379)
                         ....+..+ ||+.|++.++..++.++..+++||+|++...+++.++..+...+............+    ... ...
T Consensus       184 ~~~~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (481)
T TIGR00879       184 SGKVSLNNTLG-WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSI  262 (481)
T ss_pred             HHhhcCCCCcc-HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHH
Confidence               66666667 999999977777776667778999998776666655544444333222211111000    000 000


Q ss_pred             CCCCCcchhhhhhcccc--hhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCC---hhHHHHHHHHHHHHHHHHHHHH
Q 016986          270 GDDGDIVKFEELLYGRH--FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVL  344 (379)
Q Consensus       270 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l  344 (379)
                      ........++++++..+  .+..+....+..+..........++.+...+..+.+   .+.......++.+++.++.|++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l  342 (481)
T TIGR00879       263 EKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFL  342 (481)
T ss_pred             HHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00011111334443221  233333333333333333333444444444444433   4677778888999999999999


Q ss_pred             HHhhCchHHHHHHHHHHHHHHHHHH
Q 016986          345 MDKLGRKALLQWSFFSMVICSSISL  369 (379)
Q Consensus       345 ~d~~g~~~~~~~~~~~~~i~~~~~~  369 (379)
                      +||++||+.+..+.++..++.+++.
T Consensus       343 ~d~~~~~~~~~~~~~~~~~~~~~~~  367 (481)
T TIGR00879       343 VDRFGRRPLLLIGAAGMAICLFVLG  367 (481)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHH
Confidence            9999999998888777777666655

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=3.8e-31  Score=245.09  Aligned_cols=325  Identities=34%  Similarity=0.608  Sum_probs=261.1

Q ss_pred             hHHHHHHHHHHHHHHhhh--hccccchhhhhhhhccCCc---ch--hHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHH
Q 016986           49 SFPHVLVATLSSFLFGYH--LGVVNEPLESISLDLGFNG---NT--LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAF  121 (379)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~---~~--~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l  121 (379)
                      .........+..+..+++  .+..++....+.++...+.   ++  .+.+|+.+++.++..+++++.|+++|++|||+.+
T Consensus        43 ~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l  122 (513)
T KOG0254|consen   43 VILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTL  122 (513)
T ss_pred             hHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            344555556666666665  5566677777766433221   11  2348999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccc
Q 016986          122 QLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (379)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  201 (379)
                      +++.+.+.++.+++++++|+.+++++|+++|+|.|....+.+.+++|..|++.||...+..+....+|..++..++....
T Consensus       123 ~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~  202 (513)
T KOG0254|consen  123 LLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTS  202 (513)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999977766665


Q ss_pred             cc-chhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhC--CCchhHHHHHHHhh--hcCC-CCCc
Q 016986          202 EI-AGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLG--GSHVKSSLAELSKL--DRGD-DGDI  275 (379)
Q Consensus       202 ~~-~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~-~~~~  275 (379)
                      +. .+ ||..+.+..+++++..+..++.||+|+|+.++++.+++++.+..+.+  ..+...+.++....  .+.. ....
T Consensus       203 ~~~~~-Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (513)
T KOG0254|consen  203 KVYAG-WRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGK  281 (513)
T ss_pred             cCCcc-HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhccccc
Confidence            44 35 99999999999988888888899999999999999999999999988  33444443333311  1111 1112


Q ss_pred             chhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCh--hHHHHHHHHHHHHHHHHHHHHHHhhCchHH
Q 016986          276 VKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS--GLANVFVGIANLLGSVVAMVLMDKLGRKAL  353 (379)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~  353 (379)
                      ..++++++.+..+...+...+..+..+++.+...+|.+.+++..+.+.  .......++..+++..++.++.||+|||++
T Consensus       282 ~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~l  361 (513)
T KOG0254|consen  282 ASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKL  361 (513)
T ss_pred             ccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            246666665566667778888888888888888899999988877764  456677788888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 016986          354 LQWSFFSMVICSSISLILEAF  374 (379)
Q Consensus       354 ~~~~~~~~~i~~~~~~~~~~~  374 (379)
                      ++.+...+.++.+++......
T Consensus       362 ll~s~~~m~~~~~~~~~~~~~  382 (513)
T KOG0254|consen  362 LLFGAAGMSICLVILAVVGVF  382 (513)
T ss_pred             HHHhHHHHHHHHHHHHHHHHH
Confidence            999999999999888776544

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=5.3e-31  Score=240.03  Aligned_cols=297  Identities=17%  Similarity=0.209  Sum_probs=221.5

Q ss_pred             chhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhH
Q 016986           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (379)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~  126 (379)
                      +.+++.+..+.+..+.++++.....+..|.+.+++|.++.+.  +++.+++.++..++++++|+++||+|||++++.+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~   91 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEG--AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIV   91 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            344566778888888889999888999999999999987776  899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchh
Q 016986          127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW  206 (379)
Q Consensus       127 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  206 (379)
                      ..+++.++++++++++.++++|+++|++.+...+....++.|++|+|+|+++.++...+..+|.++++.+.+.+.+..+ 
T Consensus        92 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~-  170 (426)
T PRK12307         92 AYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG-  170 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999888888888 


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccc
Q 016986          207 WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRH  286 (379)
Q Consensus       207 wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (379)
                      ||+.|++..+..++........||++++..++.+  +          ..+         ..+...+....+++++++++.
T Consensus       171 w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~--~----------~~~---------~~~~~~~~~~~~~~~~~~~~~  229 (426)
T PRK12307        171 WRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS--G----------KGK---------HSQSAWSVFSLSMKGLFNRAQ  229 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh--c----------ccc---------ccccchhhhhHHHHHHHhhch
Confidence            9999988654443333222334555432111000  0          000         000000111235677888887


Q ss_pred             hhHHHHHHHHHHHHH---hhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHH
Q 016986          287 FRVVFIGSTLFALQQ---LSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVI  363 (379)
Q Consensus       287 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i  363 (379)
                      ++.............   +....+.+.|+.. .+.+....+.......++.+++.++.|++.||++||+.+..+.++..+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~  308 (426)
T PRK12307        230 FPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFL  308 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            765443332222211   1223344555443 233233345677778889999999999999999999988877766665


Q ss_pred             HHHHH
Q 016986          364 CSSIS  368 (379)
Q Consensus       364 ~~~~~  368 (379)
                      ..+.+
T Consensus       309 ~~~~~  313 (426)
T PRK12307        309 FIFPL  313 (426)
T ss_pred             HHHHH
Confidence            55444

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=7.9e-31  Score=237.48  Aligned_cols=302  Identities=19%  Similarity=0.217  Sum_probs=219.7

Q ss_pred             chhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhH
Q 016986           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (379)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~  126 (379)
                      +++|+.+..++++.+.++++....++..|.+.+++|.+..+.  +++.+++.++..+++++.|+++||+|||++++.+.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   85 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDA--ASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV   85 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            455788888999999999999999999999999999988777  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch-
Q 016986          127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-  205 (379)
Q Consensus       127 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-  205 (379)
                      +.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+..+ 
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  165 (405)
T TIGR00891        86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD  165 (405)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999888776543 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhccc
Q 016986          206 WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR  285 (379)
Q Consensus       206 ~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (379)
                      +||+.|++.++..++.++.....||++++..++++.++..+..++.........         ...+......++.  .+
T Consensus       166 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~--~~  234 (405)
T TIGR00891       166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIA---------NIVMTLAAAMVQS--AG  234 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhh---------hhhhhhhHHhhhh--hh
Confidence            399999987766666655566678876543222211111111111110000000         0000000001111  11


Q ss_pred             chhH----HHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Q 016986          286 HFRV----VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM  361 (379)
Q Consensus       286 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~  361 (379)
                      ..+.    .................+.+.|..+.++.+..+.+.......++.+++.++.+++.||++||+.+..+....
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~  314 (405)
T TIGR00891       235 KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAG  314 (405)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHH
Confidence            1111    111111112222233344555555544544445667788889999999999999999999999887776654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=1.6e-30  Score=233.43  Aligned_cols=267  Identities=16%  Similarity=0.136  Sum_probs=205.4

Q ss_pred             hHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHH
Q 016986           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (379)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  128 (379)
                      .|+.+..+.+..+..........+.+|.+.+++|.+.++.  ++..+++.++..+++++.|+++||+|||++++.+.++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~   95 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVA--GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLL   95 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHH
Confidence            4555555555555554444455667899999999988877  89999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhH
Q 016986          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (379)
Q Consensus       129 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr  208 (379)
                      +++.+++++++|++.+++.|+++|++.+...+...+++.|++|+|+|+++.++...+.++|..++|.+++.+.+..+ ||
T Consensus        96 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w~  174 (394)
T PRK10213         96 TLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-WR  174 (394)
T ss_pred             HHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-HH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888 99


Q ss_pred             HHHHHHHHHHHHHHHHH-hhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccch
Q 016986          209 ICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (379)
Q Consensus       209 ~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (379)
                      +.|++.++..++..+.. ...||+|+     ++ ++                              ...+.++.+++|.+
T Consensus       175 ~~f~~~~~l~~~~~l~~~~~~p~~~~-----~~-~~------------------------------~~~~~~~~l~~~~~  218 (394)
T PRK10213        175 NVFNAAAVMGVLCIFWIIKSLPSLPG-----EP-SH------------------------------QKQNTFRLLQRPGV  218 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCc-----cc-cc------------------------------chhHHHHHhcCHHH
Confidence            99998776665544433 33565431     00 00                              01123456777877


Q ss_pred             hHHHHHHHHHHHHHhhchhHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHH
Q 016986          288 RVVFIGSTLFALQQLSGINAI-FYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQ  355 (379)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~  355 (379)
                      +...+..++.....+....+. |.|. +.++.+..+.+......+++.+++.++.+++.||.+++..+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~  286 (394)
T PRK10213        219 MAGMIAIFMSFAGQFAFFTYIRPVYM-NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAG  286 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence            776555444444443333443 3333 333444445678888888999999999999999965443333

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=2.4e-31  Score=247.36  Aligned_cols=291  Identities=22%  Similarity=0.313  Sum_probs=225.5

Q ss_pred             chhhhhhhhccCC---cchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHH
Q 016986           72 EPLESISLDLGFN---GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR  148 (379)
Q Consensus        72 ~~~~~i~~~~~~~---~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r  148 (379)
                      +..|.+.+|+|++   ..+.  +++.+++.++..++++++|+++||+|||++++++.++.+++.++.++++|++.+++.|
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~--~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r  187 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKV--DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFR  187 (505)
T ss_pred             cccccEEEEecceechHHHH--HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            5678899999997   4444  8999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhhc
Q 016986          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC  228 (379)
Q Consensus       149 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~  228 (379)
                      ++.|++.+...+....++.|++|+++|+++.++...+..+|.++++.++..+.+    ||+.|++.+++.++..+..+++
T Consensus       188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----wr~~~~~~~i~~~~~~~~~~~~  263 (505)
T TIGR00898       188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPTFLFFLLSWFV  263 (505)
T ss_pred             HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999998876543    9999999888887777777889


Q ss_pred             CCChhHHHHcCChHHHHHHHHHHhCCCchh--HHHHHHH-hhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhch
Q 016986          229 AESPHWLYKKGRTAEAEAEFEKLLGGSHVK--SSLAELS-KLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGI  305 (379)
Q Consensus       229 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (379)
                      ||+|+|+..+++.+++.+..++....+...  .+..+.. +.+..+..+...++++++++.++...+...+..+.....+
T Consensus       264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  343 (505)
T TIGR00898       264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY  343 (505)
T ss_pred             CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988888777666544322111  1110110 1111111223567889999988876665544443332222


Q ss_pred             hHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHH
Q 016986          306 NAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILE  372 (379)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~  372 (379)
                      ...+.+.+    ..+.+........++..+++.++.+++.||+|||+.+.++.++.+++++++.+.+
T Consensus       344 ~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~  406 (505)
T TIGR00898       344 YGLVLDLG----NLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP  406 (505)
T ss_pred             HHHhcccc----ccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC
Confidence            22222222    2233344566677888899999999999999999999988888888777666543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=4.8e-32  Score=248.96  Aligned_cols=299  Identities=16%  Similarity=0.095  Sum_probs=222.9

Q ss_pred             hhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHH
Q 016986           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (379)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~  127 (379)
                      ..+..+..+++.+++.+.++..+++..|.+.+|+|++..+.  |++.+++.+++.+++++.|+++||+|||+++..+.++
T Consensus        26 ~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~  103 (467)
T PRK09556         26 PFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTEL--GMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLIL  103 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHH
Confidence            35666777888888888899999999999999999987777  9999999999999999999999999999999988888


Q ss_pred             HHHHHHHHhc-----ccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccc
Q 016986          128 MIIGASISAT-----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (379)
Q Consensus       128 ~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  202 (379)
                      ++++.+..++     ++|++.+++.|+++|++.+...+...++++||+|+++|++++++++.+..+|.++++.+...+.+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~  183 (467)
T PRK09556        104 SAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGAN  183 (467)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHH
Confidence            8877766554     68999999999999999999999999999999999999999999999999999999888766554


Q ss_pred             cc--hhhHHHHHHHHHHHHHHHHH-HhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcch-h
Q 016986          203 IA--GWWRICFWVSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVK-F  278 (379)
Q Consensus       203 ~~--~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  278 (379)
                      ..  ++||..|.+.+++.++..+. +++.+++|+..   +..++ ++..+   . . ...+  + ...++.+...... .
T Consensus       184 ~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~~~-~~~~~---~-~-~~~~--~-~~~~~~~~~~~~~~~  251 (467)
T PRK09556        184 YFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWGKA-EEIFG---E-P-ISEE--D-KETESTDMTKWQIFV  251 (467)
T ss_pred             hhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCCCh-hhccc---C-c-cchh--h-hccccccCcHHHHHH
Confidence            32  23899888877666655444 34456665421   11010 00000   0 0 0000  0 0000000000111 2


Q ss_pred             hhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHH
Q 016986          279 EELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSF  358 (379)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~  358 (379)
                      +..++++.++...+..++..........+.|.|+.+.++.+..+++.......++.+++.++.|+++||+++|+......
T Consensus       252 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~  331 (467)
T PRK09556        252 EYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACI  331 (467)
T ss_pred             HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            33688888888877777766666666677888887766666666777888888999999999999999999887765544


Q ss_pred             HH
Q 016986          359 FS  360 (379)
Q Consensus       359 ~~  360 (379)
                      ..
T Consensus       332 ~~  333 (467)
T PRK09556        332 AL  333 (467)
T ss_pred             HH
Confidence            33

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=2.4e-30  Score=234.29  Aligned_cols=292  Identities=18%  Similarity=0.232  Sum_probs=221.8

Q ss_pred             cchhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHh
Q 016986           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA  125 (379)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~  125 (379)
                      .+++|..+.++++..++++++....+...|.+.+++|.+.++.  +++.+++.++..+++++.|+++||+|||+++..+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   87 (406)
T PRK11551         10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQM--GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSV   87 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence            3466888888889999999999999999999999999987776  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch
Q 016986          126 LPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (379)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (379)
                      ++..++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  167 (406)
T PRK11551         88 ALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA  167 (406)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988888777


Q ss_pred             hhHHHHHHHHHHHHHHHH-HHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcc
Q 016986          206 WWRICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYG  284 (379)
Q Consensus       206 ~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (379)
                       ||+.|++.++..++..+ ...++||+|++..++++.++.++                              ..+..+++
T Consensus       168 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~  216 (406)
T PRK11551        168 -WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP------------------------------VLRALFGE  216 (406)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh------------------------------hHHHHhhh
Confidence             99999987665555443 34557888654322111110000                              00111111


Q ss_pred             ---cchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Q 016986          285 ---RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM  361 (379)
Q Consensus       285 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~  361 (379)
                         +..+......+......+....+.|.+..+ .+.+..+.+.......++.+++.++.|++.||+++|+.+..+.+..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~  295 (406)
T PRK11551        217 GRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGI  295 (406)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence               112222222222222333333445555443 2444445678888889999999999999999999999887766666


Q ss_pred             HHHHHHHHHH
Q 016986          362 VICSSISLIL  371 (379)
Q Consensus       362 ~i~~~~~~~~  371 (379)
                      .++.+++...
T Consensus       296 ~~~~~~~~~~  305 (406)
T PRK11551        296 LASLAALAAA  305 (406)
T ss_pred             HHHHHHHHhc
Confidence            5555544433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.98  E-value=2.6e-30  Score=232.17  Aligned_cols=279  Identities=13%  Similarity=0.061  Sum_probs=214.0

Q ss_pred             HHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHH
Q 016986           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (379)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~  129 (379)
                      |.....++.+.+..... ...++.+|.+++|+|++.++.  +++.+++.+++.+++++.|+++||+|||+++..+..+++
T Consensus         9 ~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~   85 (393)
T PRK09705          9 FMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFSVA--ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIA   85 (393)
T ss_pred             HHHHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHH
Confidence            44444444443333333 567899999999999988777  999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHH
Q 016986          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (379)
Q Consensus       130 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~  209 (379)
                      ++.+++++++|++.++++|+++|++.+...+....++.|++| ++|+++++++..+..+|..+++.+++.+.++..+||+
T Consensus        86 ~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~  164 (393)
T PRK09705         86 VGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQ  164 (393)
T ss_pred             HHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            999999999999999999999999999999999999999997 7899999999999999999999999888877533999


Q ss_pred             HHHHHHHHHHHHHHHHhhc-CCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchh
Q 016986          210 CFWVSIVPAAILCLAMVFC-AESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR  288 (379)
Q Consensus       210 ~f~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (379)
                      .+.+.++..++..+..+.. +++|+     +  ++                          ++   ..+.++.++++..+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~--------------------------~~---~~~~~~~l~~~~~~  208 (393)
T PRK09705        165 TLAWWALPAVVALFAWWWQSAREVA-----S--SH--------------------------KT---TTTPVRVVFTPRAW  208 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCc-----c--cc--------------------------CC---CcCCcccccCHhHH
Confidence            8876555544433333222 12111     0  00                          00   01123445566666


Q ss_pred             HHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHH
Q 016986          289 VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSIS  368 (379)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~  368 (379)
                      ...+...+....+.....+.+.|+.+ ++.+..+.+......+++.++++++.+++.||+++|+.+..+..+..++.+++
T Consensus       209 ~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~  287 (393)
T PRK09705        209 TLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGF  287 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence            66555555555555666677777765 45555567788889999999999999999999999998888877776666554


Q ss_pred             H
Q 016986          369 L  369 (379)
Q Consensus       369 ~  369 (379)
                      .
T Consensus       288 ~  288 (393)
T PRK09705        288 I  288 (393)
T ss_pred             H
Confidence            4

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.98  E-value=1.2e-30  Score=241.92  Aligned_cols=312  Identities=19%  Similarity=0.218  Sum_probs=242.0

Q ss_pred             HHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHH
Q 016986           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (379)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~  131 (379)
                      .+..+.++.++..++....++.+|.+.+++|.+.++.  +++.+.+.++..++.++.|+++||+|||++++.+.++..++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   80 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQV--QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhh--hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            4556777888888999999999999999999987777  89999999999999999999999999999999999999999


Q ss_pred             HHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Q 016986          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (379)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f  211 (379)
                      .+++++++|++.+++.|+++|++.+...+...+++.|++|+++|+++++++..+..+|..++|.+++.+.++.+ ||+.|
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f  159 (485)
T TIGR00711        81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIF  159 (485)
T ss_pred             HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-ceehh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888 99999


Q ss_pred             HHHHHHHHHHHHHH-hhcCCChhHHHHcCChHHHHHHH--------H--HHhCCC-ch--hHHHH-----------HHHh
Q 016986          212 WVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEF--------E--KLLGGS-HV--KSSLA-----------ELSK  266 (379)
Q Consensus       212 ~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~--------~--~~~~~~-~~--~~~~~-----------~~~~  266 (379)
                      ++.++..++..+.. ++.||+++.  .+++.+......        .  ...+.. +.  .....           ....
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (485)
T TIGR00711       160 LINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVV  237 (485)
T ss_pred             hhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            99777766655443 446664321  111111110000        0  000000 00  00000           0000


Q ss_pred             hhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 016986          267 LDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMD  346 (379)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  346 (379)
                      .+.. .+++....++++++.++...+..++..+..+......|.|+.+.++.+..+.+....+..++.+++.++.|++.|
T Consensus       238 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~  316 (485)
T TIGR00711       238 WELT-DDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGD  316 (485)
T ss_pred             HHHc-CCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            0111 111222346788898888877777777777777777888888777777777888888999999999999999999


Q ss_pred             hhCchHHHHHHHHHHHHHHHHHH
Q 016986          347 KLGRKALLQWSFFSMVICSSISL  369 (379)
Q Consensus       347 ~~g~~~~~~~~~~~~~i~~~~~~  369 (379)
                      |++||+.+.++..+..++..++.
T Consensus       317 r~~~~~~~~~g~~~~~~~~~~~~  339 (485)
T TIGR00711       317 KIDPRKLVTIGLILYAVGFYWRA  339 (485)
T ss_pred             hcCcHHHHHHHHHHHHHHHHHHh
Confidence            99999998888877777766654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK09952 shikimate transporter; Provisional

Probab=99.98  E-value=1.2e-29  Score=230.89  Aligned_cols=286  Identities=18%  Similarity=0.109  Sum_probs=200.2

Q ss_pred             hhHHHHHHHHHHHHHHhhhhccccchhhh-hhhhc--cCCcchhHHHHHH-----HHHHHHHHHHHHhHHhhhccchhHH
Q 016986           48 LSFPHVLVATLSSFLFGYHLGVVNEPLES-ISLDL--GFNGNTLAEGLVV-----SMCLGGAFIGSTLSGWIADGVGRRR  119 (379)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~~~~~~~~~~~~-----s~~~~~~~i~~~~~g~l~d~~Grr~  119 (379)
                      ++++.+....++.+.++++...++.+.|. +.+++  +.++..   +++.     ++.+++..+++++.|+++||+|||+
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~   95 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM---GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKR   95 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHH
Confidence            34567777888999999999988877774 45555  555442   4443     3455667899999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHhcccchH--------HHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHH
Q 016986          120 AFQLCALPMIIGASISATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLM  191 (379)
Q Consensus       120 ~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  191 (379)
                      +++.+.++++++++++++++|+.        .++++|+++|++.|..++....++.|++|+++|++..+..+.+..+|.+
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~  175 (438)
T PRK09952         96 MLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLL  175 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999987        4888999999999999999999999999999999999999999999998


Q ss_pred             HHHhhcccccc--------cchhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHH
Q 016986          192 GSLLIGIPVKE--------IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAE  263 (379)
Q Consensus       192 ~~~~~~~~l~~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (379)
                      ++..+...+..        ..+ ||+.|++.+++.++........||+|++...+++.++                    
T Consensus       176 l~~~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~--------------------  234 (438)
T PRK09952        176 LSTGLVSLISMMTTDEQFLSWG-WRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA--------------------  234 (438)
T ss_pred             HHHHHHHHHHHhCCHHHhhccC-hHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc--------------------
Confidence            88776655432        346 9999999877765544444557787754322111000                    


Q ss_pred             HHhhhcCCCCCcchhhhhhcccchhHHHH-HHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 016986          264 LSKLDRGDDGDIVKFEELLYGRHFRVVFI-GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAM  342 (379)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  342 (379)
                            . +.+....+.++++++.+.... ..++.....+....+.+.|..+.++.+...........++..+++.++.|
T Consensus       235 ------~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g  307 (438)
T PRK09952        235 ------A-KKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFA  307 (438)
T ss_pred             ------c-cccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  0 000111223455555544432 22223333344445556665544333222222344456677788899999


Q ss_pred             HHHHhhCchHHHHHHHHHHHHH
Q 016986          343 VLMDKLGRKALLQWSFFSMVIC  364 (379)
Q Consensus       343 ~l~d~~g~~~~~~~~~~~~~i~  364 (379)
                      +++||++||+.+..+.++..++
T Consensus       308 ~l~Dr~grr~~~~~~~~~~~~~  329 (438)
T PRK09952        308 WLADRFGRRRVYITGALIGTLS  329 (438)
T ss_pred             HHHHHhCchHHHHHHHHHHHHH
Confidence            9999999999887766554443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.98  E-value=4.1e-30  Score=230.37  Aligned_cols=279  Identities=14%  Similarity=0.166  Sum_probs=214.9

Q ss_pred             HHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHH
Q 016986           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (379)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~  132 (379)
                      +....+..+..+.......+.+|.+++|+|.+.++.  +++.+++.+++.++++++|+++||+|||+++..+.++.+++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   82 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAA--GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN   82 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHH--hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence            445556667777777788889999999999987777  999999999999999999999999999999999999999999


Q ss_pred             HHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Q 016986          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (379)
Q Consensus       133 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~  212 (379)
                      +++++++|++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|..+++.+++.+.+..+ ||+.|+
T Consensus        83 ~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-wr~~f~  161 (382)
T PRK10091         83 AMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS-WRYTFL  161 (382)
T ss_pred             HHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-HHHHHH
Confidence            9999999999999999999999999888888999999999999999999999999999999999999888878 999999


Q ss_pred             HHHHHHHHHHHH-HhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHH
Q 016986          213 VSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF  291 (379)
Q Consensus       213 ~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (379)
                      +.++..++..+. ..++||.++    +.+ .+.+                               +..+.++++..+...
T Consensus       162 ~~~~~~~~~~~~~~~~lp~~~~----~~~-~~~~-------------------------------~~~~~~~~~~~~~~~  205 (382)
T PRK10091        162 LIAVFNIAVLASIYFWVPDIRD----EAK-GGLR-------------------------------EQFHFLRSPAPWLIF  205 (382)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCc----ccc-cCHH-------------------------------HHHHHhcChHHHHHH
Confidence            977766555443 345676531    100 0000                               011234555555443


Q ss_pred             HHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Q 016986          292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLI  370 (379)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~  370 (379)
                      ....+.....+....+.+.+..+.++.+....+......+++.++++++.+++.||+++|+.+..+..+..++.+++..
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~  284 (382)
T PRK10091        206 AATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFF  284 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHH
Confidence            3333322222222233344444434444445667888899999999999999999999999888887777776655543

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.98  E-value=3.3e-32  Score=232.91  Aligned_cols=281  Identities=19%  Similarity=0.193  Sum_probs=231.2

Q ss_pred             CccchhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHH
Q 016986           44 PSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL  123 (379)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~  123 (379)
                      .+.+..++.+.++++.+.++.++...+..+.+.+++.+|++++..  |++.+.+.+.+.+++|++|+++|||.||+++.+
T Consensus        26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~--Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~v  103 (493)
T KOG1330|consen   26 LSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSEL--GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAV  103 (493)
T ss_pred             cccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhc--cchhHHHHHHHHHHHHHHHHHHhhcCcceEEee
Confidence            344556778889999999999999999999999999999998887  999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccccc
Q 016986          124 CALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (379)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  203 (379)
                      |.+++.++.+++++++.+|+++++|.+.|+|.+...|+.+++++|.+|..+|++++++++.+..+|..+|.+++..+.+.
T Consensus       104 G~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~  183 (493)
T KOG1330|consen  104 GIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL  183 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhh-cCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhh
Q 016986          204 AGWWRICFWVSIVPAAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL  282 (379)
Q Consensus       204 ~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (379)
                      .++|||.|++.+++++++.++.++ .+|+ +    ++..++....                 .+......+...+.+.+.
T Consensus       184 ~~~Wr~af~~~avl~vi~~~L~~~f~~eP-~----rga~~~~~~~-----------------~~~~~~~ts~~kDl~~l~  241 (493)
T KOG1330|consen  184 TFWWRWAFRGSAVLGVIVGLLVFLFVREP-E----RGARDEVDGE-----------------NKMVKPFTSVWKDLKVLA  241 (493)
T ss_pred             ccceEEEEEeehHHHHHHHHHHHhhccCc-c----cccccccccC-----------------CcCCCCccchHHHHHHHH
Confidence            888999999999998887776655 5554 2    2211111100                 000112233345666677


Q ss_pred             cccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCC--h-hHHHHHHHHHHHHHHHHHHHHHHhh
Q 016986          283 YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS--S-GLANVFVGIANLLGSVVAMVLMDKL  348 (379)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~g~l~d~~  348 (379)
                      +++.+....+......+...+.--+.|.+.+..+...+.+  . -....+...++.+|.+++|.++||+
T Consensus       242 ~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~  310 (493)
T KOG1330|consen  242 KIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKL  310 (493)
T ss_pred             ccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHH
Confidence            7788887777777777776666667777776666655432  2 2566677788899999999999994

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.97  E-value=1.9e-30  Score=236.15  Aligned_cols=282  Identities=16%  Similarity=0.110  Sum_probs=213.7

Q ss_pred             HHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHH
Q 016986           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (379)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~  129 (379)
                      +.......+..+...++...++..+|.+.+++|++..+.  +++.+++.+++.+++++.|+++||+|||+++.++.++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~   99 (434)
T PRK11663         22 RHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDI--GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG   99 (434)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence            455556667777777777788889999999999987776  999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHH
Q 016986          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (379)
Q Consensus       130 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~  209 (379)
                      ++.++++++++++.+++.|++.|++.|...+...+++.|++|+++|++++++++.+..+|..+++.+.+.+.+..+ ||+
T Consensus       100 ~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~  178 (434)
T PRK11663        100 IINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG-WRY  178 (434)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-HHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988888 999


Q ss_pred             HHHHHHHHHHHHH-HHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcch-h-hhhhcccc
Q 016986          210 CFWVSIVPAAILC-LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVK-F-EELLYGRH  286 (379)
Q Consensus       210 ~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~  286 (379)
                      .|++.++..++.. +..++++|+|++...+...+...+.          .    +..+..+.+..+..+ + ...++++.
T Consensus       179 ~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (434)
T PRK11663        179 GMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDA----------L----ELAQQQEGAGLSRKEILTKYVLLNPY  244 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccc----------c----ccchhccccCCChhhhHHHHHhcChH
Confidence            9998777655443 3445678876532111100000000          0    000000000001111 1 12566777


Q ss_pred             hhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 016986          287 FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL  348 (379)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  348 (379)
                      ++...+..++..........+.|.|+.+.++.+..+.+.......++.++++++.|+++||+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~  306 (434)
T PRK11663        245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL  306 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            77766655555555555555667776555555555667788888999999999999999998

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.97  E-value=1.3e-29  Score=225.73  Aligned_cols=277  Identities=12%  Similarity=0.050  Sum_probs=211.7

Q ss_pred             hHHHHHHHHHHHHHHhhhhccccchhhhhhh-hccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHH
Q 016986           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (379)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~  127 (379)
                      .++.+.+..++.++........++..+.+.+ ++|++.++.  +++.+++.+++.++.++.|++.||+|.|+++.++.++
T Consensus        32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~--g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll  109 (462)
T PRK15034         32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQL--FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAI  109 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            3567777777777777888888898888876 899988877  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc-----cchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccc-
Q 016986          128 MIIGASISATT-----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-  201 (379)
Q Consensus       128 ~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-  201 (379)
                      +++.+++.+++     ++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++.+.+. 
T Consensus       110 ~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~  188 (462)
T PRK15034        110 LIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIF  188 (462)
T ss_pred             HHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999999987     8999999999999997 7788899999999999999999999997666667665555443322 


Q ss_pred             ----c-------------cchhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHH
Q 016986          202 ----E-------------IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAEL  264 (379)
Q Consensus       202 ----~-------------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (379)
                          .             ..+ ||..+++.+++.++..+..+++.++++    +.                         
T Consensus       189 ~~l~~~~G~~~~~~~~g~~~~-~~~~~~~~~~~~iv~~i~~~~~~~~~~----~~-------------------------  238 (462)
T PRK15034        189 VPVFAFLGVNGVPQADGSVMS-LANAAWIWVPLLAIATIAAWSGMNDIA----SS-------------------------  238 (462)
T ss_pred             HHHHHHhccccccccccchHH-HHHHHHHHHHHHHHHHHHHHHhCCCcc----cc-------------------------
Confidence                1             223 788887776766666555544433321    00                         


Q ss_pred             HhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 016986          265 SKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVL  344 (379)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  344 (379)
                             +....+.++.+|+|+.|...+..++.+..+.+...++|+|....+.  ............+...+.++++|++
T Consensus       239 -------~~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~L  309 (462)
T PRK15034        239 -------RASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAI  309 (462)
T ss_pred             -------ccCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHH
Confidence                   0112345568899999988888777776666666677777665442  1222223344567788899999999


Q ss_pred             HHhhCchHHHHHHHHHHHHHHHH
Q 016986          345 MDKLGRKALLQWSFFSMVICSSI  367 (379)
Q Consensus       345 ~d~~g~~~~~~~~~~~~~i~~~~  367 (379)
                      +||+|+++.+.++.+.+.++...
T Consensus       310 ADRiG~~~vl~~~~i~~~i~~~~  332 (462)
T PRK15034        310 SDKFGGVRVTLINFIFMAIFSAL  332 (462)
T ss_pred             HHhcCchHHHHHHHHHHHHHHHH
Confidence            99999999998888766666533

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.97  E-value=1.1e-29  Score=229.77  Aligned_cols=291  Identities=17%  Similarity=0.140  Sum_probs=226.2

Q ss_pred             chhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhH
Q 016986           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (379)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~  126 (379)
                      ++.+.....+.+..+...+....+.+.+|.+.+++|.+..+.  ++..+.+.+++.+++++.|+++||+|||++++.+.+
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~   86 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWV--PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVA   86 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            445666667777778878888888899999999999987766  899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchh
Q 016986          127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW  206 (379)
Q Consensus       127 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  206 (379)
                      ..+++.++.+++++++.+++.|+++|++.+...+....++.|++|+++|.++.++......+|..++|.+++.+.+..+ 
T Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~-  165 (406)
T PRK15402         87 FFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP-  165 (406)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-
Confidence            9999999999999999999999999999998888999999999999999999999988888999999999998888777 


Q ss_pred             hHHHHHHHHHHHHHHHHHH-hhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhccc
Q 016986          207 WRICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR  285 (379)
Q Consensus       207 wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (379)
                      ||+.|++.++..++..+.. ...||+++..   ++..+ .                          .+...++++++++|
T Consensus       166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~--------------------------~~~~~~~~~~~~~~  215 (406)
T PRK15402        166 WRGMFVLFAALAALSFFGLWRAMPETAGRV---GEKLS-L--------------------------KELGRDYKLVLKNR  215 (406)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCCCCccc---ccccc-H--------------------------HHHHHHHHHHHcCc
Confidence            9999998777766655543 4467654210   00000 0                          00112356678888


Q ss_pred             chhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Q 016986          286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICS  365 (379)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~  365 (379)
                      .++...+...+............+.++.+.++.+..+.+.......++.+++.++.+++.||+++|+.+.++.++..++.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~  295 (406)
T PRK15402        216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGL  295 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            88776665555444433333445656555455444445666666777888999999999999999998888877766666


Q ss_pred             HHHHH
Q 016986          366 SISLI  370 (379)
Q Consensus       366 ~~~~~  370 (379)
                      .++..
T Consensus       296 ~~~~~  300 (406)
T PRK15402        296 LLAAL  300 (406)
T ss_pred             HHHHH
Confidence            55544

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.97  E-value=8.8e-30  Score=229.07  Aligned_cols=283  Identities=17%  Similarity=0.164  Sum_probs=221.8

Q ss_pred             HHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHH
Q 016986           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (379)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~  133 (379)
                      ..+....+..........+..|.+.+++|.+.++.  +++.+++.++..+++++.|+++||+|||+++..+.++.+++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   85 (385)
T TIGR00710         8 LLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIV--QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSL   85 (385)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHH
Confidence            33444445556677778889999999999987777  9999999999999999999999999999999999999999999


Q ss_pred             HHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Q 016986          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (379)
Q Consensus       134 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~  213 (379)
                      +.+++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.+++.+.+..+ ||+.|++
T Consensus        86 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~~~  164 (385)
T TIGR00710        86 GLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIFAF  164 (385)
T ss_pred             HHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999888878 9999998


Q ss_pred             HHHHHHHHHHHH-hhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHH
Q 016986          214 SIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (379)
Q Consensus       214 ~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (379)
                      .++..++..+.. ++.||+++.    +++++..                           ......++.++++.++...+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~  213 (385)
T TIGR00710       165 LSLAGILLSALIFFILPETLPY----EARIQIS---------------------------TYFETFLLLLKSKMFWGYAL  213 (385)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCC----cccCCHH---------------------------HHHHHHHHHHcCchhHHHHH
Confidence            777666554443 446665321    1100000                           00123456677888777665


Q ss_pred             HHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Q 016986          293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLI  370 (379)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~  370 (379)
                      ...+............+.+..+.++.++.+.+.......++.+++.++.|++.||+++|+.+..+..+..++..++..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (385)
T TIGR00710       214 IYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEI  291 (385)
T ss_pred             HHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            555544444444445555655555555555677888888999999999999999999999888777666666555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.97  E-value=1.4e-29  Score=232.48  Aligned_cols=274  Identities=15%  Similarity=0.102  Sum_probs=199.0

Q ss_pred             HHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHH
Q 016986           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (379)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~  129 (379)
                      ++.+...+...+...+......+..|.+.+++|++.++.  +++.+++.+++.+++++.|+++||+|||+++..+.++++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~  112 (476)
T PLN00028         35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDI--GNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTA  112 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            445555555666666666667888999999999987776  889999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccc----c---
Q 016986          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK----E---  202 (379)
Q Consensus       130 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~----~---  202 (379)
                      ++.++++++++++.++++|+++|++.+... ....+++|++|+++|++++++......+|..+++.+.+.+.    +   
T Consensus       113 ~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~  191 (476)
T PLN00028        113 PAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGA  191 (476)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999887654 45678999999999999999998777777766655554332    1   


Q ss_pred             --cchhhHHHHHHHHHHHHHHHHHHhhcCCC-hhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhh
Q 016986          203 --IAGWWRICFWVSIVPAAILCLAMVFCAES-PHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFE  279 (379)
Q Consensus       203 --~~~~wr~~f~~~~~~~~~~~~~~~~~~e~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (379)
                        ..+ ||+.|++.+++.++..+..++++++ |+     ++.++..+                   +.+..+......++
T Consensus       192 ~~~~g-Wr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~~-------------------~~~~~~~~~~~~~~  246 (476)
T PLN00028        192 PSFTA-WRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELKK-------------------SGTMPKDSFSKVLR  246 (476)
T ss_pred             cchhh-hHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHHh-------------------cCccccccHHHHHH
Confidence              235 9999999888777666555555443 31     11000000                   00000001112356


Q ss_pred             hhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCch
Q 016986          280 ELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRK  351 (379)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~  351 (379)
                      +.++++.+|...+..+...........+.+.|+.+.++.+..+++.......++.+++++++|+++||++||
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r  318 (476)
T PLN00028        247 YGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR  318 (476)
T ss_pred             HHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            667788877666555444444444455666666554455545567788888999999999999999999765

>PRK15075 citrate-proton symporter; Provisional

Probab=99.97  E-value=4.4e-29  Score=227.37  Aligned_cols=279  Identities=20%  Similarity=0.249  Sum_probs=193.3

Q ss_pred             HHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHH-----HHHHHHHHHhHHhhhccchhHHHHHHH
Q 016986           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMC-----LGGAFIGSTLSGWIADGVGRRRAFQLC  124 (379)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~-----~~~~~i~~~~~g~l~d~~Grr~~l~~~  124 (379)
                      ++....++++.+++.+|...++...|.+.+|++.+..+.. ++..+..     .++..+++++.|+++||+|||++++.+
T Consensus        14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFA-SLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            4567788889999999999999999999999998766541 2333322     223347899999999999999999999


Q ss_pred             hHHHHHHHHHHhcccchHH--------HHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhh
Q 016986          125 ALPMIIGASISATTRNLIG--------MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI  196 (379)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  196 (379)
                      .+++++++++++++++++.        ++++|+++|++.+...+....+++|++|+++|++++++.+.+..+|..+++.+
T Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~  172 (434)
T PRK15075         93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL  172 (434)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999874        68899999999999999889999999999999999999998888888777777


Q ss_pred             ccccc--------ccchhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhh
Q 016986          197 GIPVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLD  268 (379)
Q Consensus       197 ~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (379)
                      ++.+.        +..+ ||+.|++..+...+........||++++..+++                             
T Consensus       173 g~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~-----------------------------  222 (434)
T PRK15075        173 GYLLNQWLSPAQMAEWG-WRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH-----------------------------  222 (434)
T ss_pred             HHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh-----------------------------
Confidence            66552        3456 999998755433222222222333321100000                             


Q ss_pred             cCCCCCcchhhhhhcccchhHH-HHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 016986          269 RGDDGDIVKFEELLYGRHFRVV-FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDK  347 (379)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  347 (379)
                        +.+....+++..+++..+.. ....++.....+....+.|.|+.+.++.+..+.+.......++.+++.++.|+++||
T Consensus       223 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr  300 (434)
T PRK15075        223 --RPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR  300 (434)
T ss_pred             --ccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              00001112223333332222 111122222233344455666655445544455677778888999999999999999


Q ss_pred             hCchHHHHHHHHHH
Q 016986          348 LGRKALLQWSFFSM  361 (379)
Q Consensus       348 ~g~~~~~~~~~~~~  361 (379)
                      ++||+.+..+....
T Consensus       301 ~g~r~~~~~~~~~~  314 (434)
T PRK15075        301 IGRRPVLIAFTVLA  314 (434)
T ss_pred             hcchHHHHHHHHHH
Confidence            99999877655443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.97  E-value=9.8e-30  Score=225.07  Aligned_cols=248  Identities=13%  Similarity=0.027  Sum_probs=185.2

Q ss_pred             hhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHH
Q 016986           64 GYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIG  143 (379)
Q Consensus        64 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  143 (379)
                      ......+++.+|.+++|+|++.++.  |++.+++.+++.+++++.|+++||+|||++++.+......+.+.....+|+++
T Consensus         4 ~~~~~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~   81 (368)
T TIGR00903         4 QAIWVTFSPVLSLVAEDIDVSKEEL--GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEW   81 (368)
T ss_pred             hHHHHHHHhhHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            3445567889999999999987776  99999999999999999999999999999877665555454433334479999


Q ss_pred             HHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Q 016986          144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (379)
Q Consensus       144 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~  223 (379)
                      ++++|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.++++++++.+.+..+ ||+.|++.++++++..+
T Consensus        82 l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~~~  159 (368)
T TIGR00903        82 LLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAGII  159 (368)
T ss_pred             HHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHH
Confidence            99999999999986 45566677999999999999999999999999999999999998888 99999997666655444


Q ss_pred             -HHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHh
Q 016986          224 -AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL  302 (379)
Q Consensus       224 -~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (379)
                       ..+++||+|++.   ++..+..                 +          ...++++++++|.++...+..++.....+
T Consensus       160 ~~~~~lp~~p~~~---~~~~~~~-----------------~----------~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  209 (368)
T TIGR00903       160 LVLAALPALPFQA---AEGFGFK-----------------D----------AVKEFGALAGRKDLWIIGAILGFGVALFD  209 (368)
T ss_pred             HHHHHcCCCCCCC---CCCcchH-----------------H----------HHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence             456689887531   1000000                 0          01136788999999998888888888877


Q ss_pred             hchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 016986          303 SGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGR  350 (379)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~  350 (379)
                      ...++.|.|+.+ .+.+ .+.+.......+.+.   +..++++||..|
T Consensus       210 ~~~~wlp~~L~~-~g~s-~~~~~~~~l~~~~g~---~g~~~~~d~~~r  252 (368)
T TIGR00903       210 NLAIWLEAALRP-AGLE-DIAGDAVALAILAGL---IGVAVIPDRVAR  252 (368)
T ss_pred             HHHHHHHHHHHH-CCCC-hHHHHHHHHHHHHHH---HHHHHhhHHhhh
Confidence            777788887754 2322 223444444444444   445778887654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK03699 putative transporter; Provisional

Probab=99.97  E-value=2.4e-29  Score=226.40  Aligned_cols=285  Identities=15%  Similarity=0.132  Sum_probs=218.9

Q ss_pred             hHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHH
Q 016986           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (379)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  128 (379)
                      +++....+++..+..+......++.+|.+.+++|++.++.  +++.+.+.+++.+++++.|++.||+|||++++.+.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~   82 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSM--SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM   82 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3556667778888888888888999999999999987777  89999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccc-cchhh
Q 016986          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-IAGWW  207 (379)
Q Consensus       129 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~~w  207 (379)
                      +++.++.+++++++.+++.|+++|++.+...+....++.|++|+++|+++++..+....+|..++|.+.+.+.. ..+ |
T Consensus        83 ~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g-w  161 (394)
T PRK03699         83 ILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE-W  161 (394)
T ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-H
Confidence            99999999999999999999999999999988899999999999999999999988889998899988877654 456 9


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccch
Q 016986          208 RICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (379)
Q Consensus       208 r~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (379)
                      |+.|.+.++..++..+..++ .+.|+.   +++.++                         +.+..    .++. .++.+
T Consensus       162 ~~~f~~~~~~~~~~~~~~~~-~~~p~~---~~~~~~-------------------------~~~~~----~~~~-~~~~~  207 (394)
T PRK03699        162 YWVYACIGLVYVAIFILTLF-SEFPAL---GKHAPK-------------------------ADKPV----AKEK-WGIGV  207 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-cCCccc---cccCcc-------------------------ccCcc----cccc-CChHH
Confidence            99999877766555444333 222210   000000                         00000    0001 12344


Q ss_pred             hHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHH
Q 016986          288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSI  367 (379)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~  367 (379)
                      +...+..++.....+....+.|.|+.+.++.+..+.+.......++.++++++.++++||+++|+.+.....+..+...+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~  287 (394)
T PRK03699        208 LFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYL  287 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence            44444455555555566677888877666666666778888888999999999999999999999887776666555544


Q ss_pred             HHH
Q 016986          368 SLI  370 (379)
Q Consensus       368 ~~~  370 (379)
                      +..
T Consensus       288 ~~~  290 (394)
T PRK03699        288 FVN  290 (394)
T ss_pred             HHH
Confidence            443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.97  E-value=4.5e-29  Score=225.30  Aligned_cols=266  Identities=16%  Similarity=0.139  Sum_probs=208.4

Q ss_pred             HHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHH
Q 016986           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (379)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~  134 (379)
                      .+.+..+...+......+.+|.+.+++|.+.++.  ++..+++.++++++++++|+++||+|||++++.+.++++++.++
T Consensus        20 ~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~   97 (413)
T PRK15403         20 ALILYDFAAYLTTDLIQPGIINVVRDFNADVSLA--PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAA   97 (413)
T ss_pred             HHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHH
Confidence            3444556666777888999999999999987777  89999999999999999999999999999999999999999999


Q ss_pred             HhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Q 016986          135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (379)
Q Consensus       135 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~  214 (379)
                      +++++|++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|..++|.+++.+.+..+ ||+.|++.
T Consensus        98 ~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~f~~~  176 (413)
T PRK15403         98 TLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLFAII  176 (413)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence            99999999999999999999987777788899999999999999999999999999999999999888777 99999998


Q ss_pred             HHHHHHHHHH-HhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHH
Q 016986          215 IVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG  293 (379)
Q Consensus       215 ~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (379)
                      ++..++..+. .+++||+++.   +++..+..                           ....+++++++||.++...+.
T Consensus       177 ~~~~~i~~~~~~~~lp~~~~~---~~~~~~~~---------------------------~~~~~~~~ll~~~~~~~~~l~  226 (413)
T PRK15403        177 AVMGLIAFVGLLLAMPETVKR---GAVPFSAK---------------------------SVLRDFRNVFRNRLFLTGAAT  226 (413)
T ss_pred             HHHHHHHHHHHHHhCCCCccc---cCCCCChH---------------------------HHHHHHHHHHcCHHHHHHHHH
Confidence            8777666554 3457876421   11000000                           001245678899998887766


Q ss_pred             HHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHH
Q 016986          294 STLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKAL  353 (379)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~  353 (379)
                      ..+.....+......|.++.+.++.+..+.++.......+.+++..+.+.+.++..+++.
T Consensus       227 ~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~  286 (413)
T PRK15403        227 LSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF  286 (413)
T ss_pred             HHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence            666555555545556666666555555556777777778888888887777655444333

>PRK10133 L-fucose transporter; Provisional

Probab=99.97  E-value=5.1e-29  Score=226.02  Aligned_cols=290  Identities=13%  Similarity=0.116  Sum_probs=215.3

Q ss_pred             hHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHH
Q 016986           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (379)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  128 (379)
                      ....+..+.+..++.++.....++..|.+++++|.+..+.  +++.+.+.+++.+++++.|+++||+|||+++..+.+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~--gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~  101 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            3445556666677778888888999999999999987777  99999999999999999999999999999999999999


Q ss_pred             HHHHHHH---hcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccc-c-
Q 016986          129 IIGASIS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-I-  203 (379)
Q Consensus       129 ~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~-  203 (379)
                      +++++++   .++++++.++++|+++|+|.+...+....++.|+.|+++|...+++.+..+.+|..+++.+++.+.. . 
T Consensus       102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~  181 (438)
T PRK10133        102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999875   5789999999999999999999999999999998877777778999999999999999988765430 0 


Q ss_pred             ----------------ch-------hhHHHHHHHH-HHHHHHHHH-HhhcCCChhHHHHcCChHHHHHHHHHHhCCCchh
Q 016986          204 ----------------AG-------WWRICFWVSI-VPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVK  258 (379)
Q Consensus       204 ----------------~~-------~wr~~f~~~~-~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (379)
                                      .+       .||++|+... +..++.++. ....||.+.     ++.++               
T Consensus       182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~-----~~~~~---------------  241 (438)
T PRK10133        182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS-----DNHSD---------------  241 (438)
T ss_pred             cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----ccccc---------------
Confidence                            11       2666665433 333232222 222443211     00000               


Q ss_pred             HHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhH-HHHHHHcCCChhHHHHHHHHHHHHH
Q 016986          259 SSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFS-SSVFKSAGLSSGLANVFVGIANLLG  337 (379)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  337 (379)
                                +...+...+.++++++|.++...+..+++.........+.+.|+ ++.++.++...+.......++.++|
T Consensus       242 ----------~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG  311 (438)
T PRK10133        242 ----------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIG  311 (438)
T ss_pred             ----------ccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence                      00011123456788889888766666666666555556666564 3344555556778889999999999


Q ss_pred             HHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Q 016986          338 SVVAMVLMDKLGRKALLQWSFFSMVICSSISLI  370 (379)
Q Consensus       338 ~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~  370 (379)
                      +++++++.||+++|+.+..+..+..+.+++..+
T Consensus       312 ~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~  344 (438)
T PRK10133        312 RFTGTWLISRFAPHKVLAAYALIAMALCLISAF  344 (438)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999888777666555554443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.97  E-value=7.8e-30  Score=230.18  Aligned_cols=278  Identities=17%  Similarity=0.137  Sum_probs=218.9

Q ss_pred             HHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccc
Q 016986           61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRN  140 (379)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~  140 (379)
                      +...++...++...|.+.+++|.+..+.  +++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++++++|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~   81 (399)
T TIGR00893         4 VINYLDRANLSFAAPMLQEDLGLSAAQY--GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA   81 (399)
T ss_pred             hHHHHHHHhhhHhHHHHHHhhCCChhhH--HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC
Confidence            4556677778888999999999987777  99999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Q 016986          141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI  220 (379)
Q Consensus       141 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~  220 (379)
                      ++.++++|+++|++.+...+....++.|++|+++|++++++.+....+|.++++.+++.+.+..+ ||+.|++.++..++
T Consensus        82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~  160 (399)
T TIGR00893        82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLGII  160 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998888888 99999987777666


Q ss_pred             HHHHH-hhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHH
Q 016986          221 LCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFAL  299 (379)
Q Consensus       221 ~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (379)
                      ..+.. ++.||+|+... ..++++.....+...          ...+.++.++......++.+++|.++...+..++...
T Consensus       161 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (399)
T TIGR00893       161 WGVLWLKFIPDPPQKAK-WLTEEEKYIVVGGLL----------AEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNI  229 (399)
T ss_pred             HHHHhhheecCCCCccc-cCCHHHHhhcchhhc----------cccccccccCCCccchHHHhcCHHHHHHHHHHHHHHh
Confidence            55544 44566543110 001111000000000          0000111222334456788888888888777777777


Q ss_pred             HHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchH
Q 016986          300 QQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKA  352 (379)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~  352 (379)
                      .......+.+.|..+.++.+..+.+.......++.+++.++.|++.||++||+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       230 GLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            76666777777777666666666778888889999999999999999999885

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.97  E-value=6.7e-30  Score=229.09  Aligned_cols=286  Identities=18%  Similarity=0.122  Sum_probs=209.9

Q ss_pred             HHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHH
Q 016986           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (379)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~  131 (379)
                      .+....+..+..+. ....++..|.+.+++|++.++.  +++.+++.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus         5 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~   81 (377)
T TIGR00890         5 VLVGTVIMCFTSGY-VYTWTLLAPPLGRYFGVGVTAV--AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLG   81 (377)
T ss_pred             EeHHHHHHHHHhhH-HhhhhhHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHH
Confidence            33334444444433 4456889999999999987777  99999999999999999999999999999999999999999


Q ss_pred             HHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Q 016986          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (379)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f  211 (379)
                      .+++++++|++.++++|++.|++.+...+.....+.|++| ++|+++.++...+..+|..+++.+.+.+.+..+ ||+.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~f  159 (377)
T TIGR00890        82 FTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEG-VPAAF  159 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhccc-HHHHH
Confidence            9999999999999999999999999888888889999997 579999999999999998776666666666667 99999


Q ss_pred             HHHHHHHHHHHHHHh-hcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHH
Q 016986          212 WVSIVPAAILCLAMV-FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV  290 (379)
Q Consensus       212 ~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (379)
                      ++.++..++..+..+ +.+++|+.   +.++++                          ....+..+.++.++++.++..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~  210 (377)
T TIGR00890       160 IYMGIIFLLVIVLGAFLIGYPPGQ---LIKTNI--------------------------EVSVKDYTVWEMLRTPQFWVL  210 (377)
T ss_pred             HHHHHHHHHHHHHHHHheecCchh---ccccCc--------------------------ccchhhhhHHHHHcCccHHHH
Confidence            998877766655543 44443321   000000                          000111234567788887766


Q ss_pred             HHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Q 016986          291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLI  370 (379)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~  370 (379)
                      ....++............+.|..+ ++.+..+.+.......++.++++++.|++.||++||+.+.++.....++.+++..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~  289 (377)
T TIGR00890       211 YLSFFLNAVSGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLF  289 (377)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence            555444443333323333333222 2222233456778888999999999999999999999988888877777766654


Q ss_pred             HH
Q 016986          371 LE  372 (379)
Q Consensus       371 ~~  372 (379)
                      .+
T Consensus       290 ~~  291 (377)
T TIGR00890       290 IP  291 (377)
T ss_pred             cc
Confidence            43

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.97  E-value=3.9e-29  Score=223.17  Aligned_cols=287  Identities=16%  Similarity=0.114  Sum_probs=224.0

Q ss_pred             HHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHH
Q 016986           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS  135 (379)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~  135 (379)
                      +..+.++..+......+.+|.+..+++.+..+.  +++.+++.++..++++++|+++||+|||++++.+.++..++.++.
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVL--SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH--HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence            345566667777777888899999988876666  999999999999999999999999999999999999999988888


Q ss_pred             hccc-----chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Q 016986          136 ATTR-----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC  210 (379)
Q Consensus       136 ~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~  210 (379)
                      ++++     +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+..+ ||+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~~  160 (365)
T TIGR00900        82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG-IKWA  160 (365)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHH
Confidence            8877     999999999999999999999999999999999999999999999999999999999999988888 9999


Q ss_pred             HHHHHHHHHHHHHHHhhc--CCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchh
Q 016986          211 FWVSIVPAAILCLAMVFC--AESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR  288 (379)
Q Consensus       211 f~~~~~~~~~~~~~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (379)
                      |++.++..++..+..+++  ||+++    +++.+..++..             +          +....+++++++|.++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-------------~----------~~~~~~~~~~~~~~~~  213 (365)
T TIGR00900       161 IWVDAVGFAISALLIVSVRIPELAA----SEIQALSNAVL-------------R----------DTREGIKFVLKNPLLR  213 (365)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCC----ccccccchhHH-------------H----------HHHhHHHHHHcCcHHH
Confidence            998777665554444333  22211    00000000000             0          0012356677888888


Q ss_pred             HHHHHHHHHHHHHhhch-hHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHH
Q 016986          289 VVFIGSTLFALQQLSGI-NAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSI  367 (379)
Q Consensus       289 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~  367 (379)
                      ......++......... ...++|..+.++.+..+.+.......++.+++.++.+++.||++||+.+..+..+.+++..+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  293 (365)
T TIGR00900       214 TLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILV  293 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence            77666666555554444 56777777666666666788888899999999999999999999999888877777776666


Q ss_pred             HHHHH
Q 016986          368 SLILE  372 (379)
Q Consensus       368 ~~~~~  372 (379)
                      +...+
T Consensus       294 ~~~~~  298 (365)
T TIGR00900       294 VGLTP  298 (365)
T ss_pred             HHhhc
Confidence            65554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.97  E-value=3.4e-29  Score=230.41  Aligned_cols=287  Identities=14%  Similarity=0.100  Sum_probs=225.9

Q ss_pred             chhHHHHHHHHHHHHHHhhhhccccchhhhhhh----------------------hccCCcchhHHHHHHHHHHHHHHHH
Q 016986           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISL----------------------DLGFNGNTLAEGLVVSMCLGGAFIG  104 (379)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~~~~~~~~~~~~s~~~~~~~i~  104 (379)
                      +.++....+++.+....+.++...+...+.+.+                      |++++..+.  |++.+++.+++.++
T Consensus        15 ~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~~~   92 (465)
T TIGR00894        15 SFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQ--GLILSSHFYGQIII   92 (465)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHh--hHHHHHHHHHHHHH
Confidence            445777777888888888888888888877766                      677766665  99999999999999


Q ss_pred             HHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcc--cchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHH
Q 016986          105 STLSGWIADGVGRRRAFQLCALPMIIGASISATT--RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFI  182 (379)
Q Consensus       105 ~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~  182 (379)
                      +++.|+++||+|||+++..+.++++++.+++.++  .+++.+++.|+++|++.+...+....++.|++|+++|++++++.
T Consensus        93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  172 (465)
T TIGR00894        93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS  172 (465)
T ss_pred             HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence            9999999999999999999999999998887544  56888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccccccc-hhhHHHHHHHHHHHHHHHHHHhh-cCCChhHHHHcCChHHHHHHHHHHhCCCchhHH
Q 016986          183 QIATCLGLMGSLLIGIPVKEIA-GWWRICFWVSIVPAAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSS  260 (379)
Q Consensus       183 ~~~~~~g~~~~~~~~~~l~~~~-~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (379)
                      ..+..+|.++++.+++.+.+.. + ||+.|++.++..++..+.+++ .+|+|+..  +...++.++..++.         
T Consensus       173 ~~~~~~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~i~~~---------  240 (465)
T TIGR00894       173 TSGFQLGTFIFLPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVFPADDPSIH--PCISKFEKKYINSS---------  240 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCC-CCeehhhhhHHHHHHHHHHHHHhcCCcccC--CCCCHHHHHHHHhh---------
Confidence            9999999999999999988874 7 999999988877766555544 55665321  11111111111100         


Q ss_pred             HHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q 016986          261 LAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVV  340 (379)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (379)
                          .+.++.+.+....++++++++.++...+..+......+....++|.|+.+.++.+..+.+.......++.+++.++
T Consensus       241 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~  316 (465)
T TIGR00894       241 ----LQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIF  316 (465)
T ss_pred             ----cccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHH
Confidence                0001111122346888999999998888887777777777778888887777777777888888889999999999


Q ss_pred             HHHHHHhhCch
Q 016986          341 AMVLMDKLGRK  351 (379)
Q Consensus       341 ~g~l~d~~g~~  351 (379)
                      +|+++||+++|
T Consensus       317 ~g~l~d~~~~~  327 (465)
T TIGR00894       317 AGYLADFLKSS  327 (465)
T ss_pred             HHHHHHHHHHc
Confidence            99999987543

>PRK10504 putative transporter; Provisional

Probab=99.97  E-value=1e-28  Score=227.79  Aligned_cols=312  Identities=17%  Similarity=0.210  Sum_probs=234.3

Q ss_pred             HHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHH
Q 016986           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (379)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~  131 (379)
                      .+..++++.++..++...+++.+|.+.+++|.+..+.  +++.+.+.++..++.+++|+++||+|||++++.+.++.+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   88 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHM--HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG   88 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            4456667778888888888899999999999987776  89999999999999999999999999999999999999999


Q ss_pred             HHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Q 016986          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (379)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f  211 (379)
                      .++++++++++.+++.|+++|++.+...+....++.|++|+++|+++.++......+|..++|.+++.+.+..+ ||+.|
T Consensus        89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g-w~~~f  167 (471)
T PRK10504         89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS-WHWIF  167 (471)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-HHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888 99999


Q ss_pred             HHHHHHHHHHHHHHh-hcCCChhHHHHcCChHHHHHHHH---------HHhCCCc---hhHHH-----------HHHHhh
Q 016986          212 WVSIVPAAILCLAMV-FCAESPHWLYKKGRTAEAEAEFE---------KLLGGSH---VKSSL-----------AELSKL  267 (379)
Q Consensus       212 ~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~---------~~~~~~~---~~~~~-----------~~~~~~  267 (379)
                      ++......+..+... ..|+++.   .+.+.+.......         ...+...   .....           ......
T Consensus       168 ~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (471)
T PRK10504        168 LINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLH  244 (471)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            987766655554443 3444321   1112111110000         0000000   00000           000001


Q ss_pred             hcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 016986          268 DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDK  347 (379)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  347 (379)
                      +....++..+ .++++||.+.......++............++|.+...+.++...++...+..++.+++.++.+++.||
T Consensus       245 ~~~~~~~~~~-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r  323 (471)
T PRK10504        245 ARNNNRALFS-LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR  323 (471)
T ss_pred             HhcCCCCccC-HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111122222 358899999888777777766655555667778777666666677788888888888999999999999


Q ss_pred             hCchHHHHHHHHHHHHHHHHHHH
Q 016986          348 LGRKALLQWSFFSMVICSSISLI  370 (379)
Q Consensus       348 ~g~~~~~~~~~~~~~i~~~~~~~  370 (379)
                      +|+|+.+..+..+..+..+++.+
T Consensus       324 ~g~~~~~~~~~~~~~~~~~~~~~  346 (471)
T PRK10504        324 FGYRRVLVATTLGLALVSLLFML  346 (471)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHh
Confidence            99999988888777766655544

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.97  E-value=5.9e-29  Score=222.15  Aligned_cols=291  Identities=17%  Similarity=0.153  Sum_probs=212.0

Q ss_pred             HHHHHHHHHhhhhccccchhhh-hhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHH
Q 016986           55 VATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (379)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~  133 (379)
                      ..+++.+..........+..|. +++++|++..+.  +++.+++.+++.++++++|+++||+|||++++.+.++..++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~   82 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQL--GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL   82 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHh--hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            4555556666666777889995 999999988777  9999999999999999999999999999999999999999999


Q ss_pred             HHhccc-chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccc----------
Q 016986          134 ISATTR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE----------  202 (379)
Q Consensus       134 ~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----------  202 (379)
                      ++++++ +++.+++.|+++|++.+. .+....+++|++|+++|++++++......+|..+++.+++.+..          
T Consensus        83 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~  161 (366)
T TIGR00886        83 WAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA  161 (366)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            999999 999999999999998654 45678899999999999999999997777777777777655543          


Q ss_pred             cchhhHHHHH-HHHHHHHH-HHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhh
Q 016986          203 IAGWWRICFW-VSIVPAAI-LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEE  280 (379)
Q Consensus       203 ~~~~wr~~f~-~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (379)
                      ..+ ||+.|+ ..++...+ .++...+.+|+|+.    ++ ++.+...+.   ..            ...++......++
T Consensus       162 ~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~---~~------------~~~~~~~~~~~~~  220 (366)
T TIGR00886       162 HLA-WGWAFVIVPAGILLLPALLIFFVGADTPPG----KP-ATGKLSFKG---AR------------WSVGTGALGDQLK  220 (366)
T ss_pred             ccc-ccchhHHHHHHHHHHHHHHHHHhcccCCcc----cc-cchhccccc---cc------------ccccchhHHHHHH
Confidence            235 999994 43444333 33344556666531    11 110000000   00            0000011124566


Q ss_pred             hhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHH
Q 016986          281 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS  360 (379)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~  360 (379)
                      .++++.++...+..++..........+.+.|+.+.++.+..+.+.......++.++++++.|+++||+++|+....+...
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~  300 (366)
T TIGR00886       221 VFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLG  300 (366)
T ss_pred             HHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHH
Confidence            78888888777666666555556666777787776666666677778888889999999999999999998877666655


Q ss_pred             HHHHHHHHH
Q 016986          361 MVICSSISL  369 (379)
Q Consensus       361 ~~i~~~~~~  369 (379)
                      ...+..++.
T Consensus       301 ~~~~~~~~~  309 (366)
T TIGR00886       301 VAMGAFLVV  309 (366)
T ss_pred             HHHHHHHHH
Confidence            555544443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.97  E-value=2.8e-29  Score=222.95  Aligned_cols=286  Identities=22%  Similarity=0.358  Sum_probs=219.1

Q ss_pred             HHHHHHHhhhhccccchhh-hhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHH
Q 016986           57 TLSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS  135 (379)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~  135 (379)
                      +++.++..+......+.+| .+.+++|.+..+.  +++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~   79 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQI--GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL   79 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCH--HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence            4556677777777888899 8999999988887  999999999999999999999999999999999999999997777


Q ss_pred             hcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Q 016986          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI  215 (379)
Q Consensus       136 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~  215 (379)
                      .+++|++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+..+ ||+.|++.+
T Consensus        80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~~~~  158 (352)
T PF07690_consen   80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRWAFLISA  158 (352)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCCHHHHHH
T ss_pred             hhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-ccccccccc
Confidence            7778888999999999999999999999999999999999999999999999999999999999998888 999999988


Q ss_pred             HHHHHHHHHH-hhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcc-hhhhhhcccchhHHHHH
Q 016986          216 VPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIV-KFEELLYGRHFRVVFIG  293 (379)
Q Consensus       216 ~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  293 (379)
                      +..++..++. .+++++++....+++.++.                        ++++.+.. .++.+.+++.++.....
T Consensus       159 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (352)
T PF07690_consen  159 ILSLIAAILFILFLPEPPPPRERESPKESE------------------------SKKPKPLKPGFKSLFKNPVLWILLIA  214 (352)
T ss_dssp             HHHHHHHHHHHCCC---STTTT--SSTTTT--------------------------HHHCCCH-CTHHHHHHCCHHHHHH
T ss_pred             chhhhhhhhHhhhhhhcccccccccccccc------------------------cccccccccccccccccchhhhhhhh
Confidence            8877776643 4455443211111110000                        00001112 36677777877755555


Q ss_pred             HHHHHHHHhhchhHHHHhHHHHHHHc-CCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Q 016986          294 STLFALQQLSGINAIFYFSSSVFKSA-GLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISL  369 (379)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~  369 (379)
                      .++..+.......+.+.|+.+.++.+ ..+.+.......+..+++.++.+++.||+++++..........+..+.+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  291 (352)
T PF07690_consen  215 FFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLL  291 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence            55555555566667777766667766 35566778888999999999999999999987766665555555554443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00895 2A0115 benzoate transport

Probab=99.97  E-value=1.1e-28  Score=222.94  Aligned_cols=303  Identities=20%  Similarity=0.267  Sum_probs=210.8

Q ss_pred             hhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHH
Q 016986           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (379)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~  127 (379)
                      ++++.+..+.+..+..+++....++..|.+.+++|.+..+.  +++.+++.++..++.++.|+++||+|||+++..+.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~   91 (398)
T TIGR00895        14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL--GFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL   91 (398)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHH--HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence            44566666777777777877788889999999999987766  8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhh
Q 016986          128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (379)
Q Consensus       128 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w  207 (379)
                      .+++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+ |
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~  170 (398)
T TIGR00895        92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-W  170 (398)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc-c
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999988888 9


Q ss_pred             HHHHHHHHHHHHH-HHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccc
Q 016986          208 RICFWVSIVPAAI-LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRH  286 (379)
Q Consensus       208 r~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (379)
                      |+.|++.++..++ ..+...++||++++..++ +.++..+..++.......+.. ++..+.+..+.......+.+++++.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  248 (398)
T TIGR00895       171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQ-SALPEQKATQGTKRSVFKALFQGKT  248 (398)
T ss_pred             eeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhcccccc-ccccccccccchhhHHHHHHhcchh
Confidence            9999987544444 444456688887654433 222222222221111000000 0000000000011111222333333


Q ss_pred             hhHHH---HHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHH
Q 016986          287 FRVVF---IGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW  356 (379)
Q Consensus       287 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~  356 (379)
                      .+...   ...++..........+.+. ....++.+..+.+.......++.+++.++.++++||+++|+....
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  320 (398)
T TIGR00895       249 ARITVLLWLLYFMLLVGVYFLTNWLPK-LMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALL  320 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            32222   2222222222222233332 222233334446678888899999999999999999998844433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.97  E-value=2.6e-28  Score=219.86  Aligned_cols=284  Identities=17%  Similarity=0.134  Sum_probs=213.6

Q ss_pred             HHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHH
Q 016986           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (379)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~  134 (379)
                      ......+..........+.+|.+.+++|.+.++.  ++..+.+.++..+++++.|+++||+|||++++.+.++..++.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~   84 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQL--HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL   84 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence            3444445555555556688999999999987766  89999999999999999999999999999999999999999999


Q ss_pred             HhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Q 016986          135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (379)
Q Consensus       135 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~  214 (379)
                      +..+++++.+++.|+++|++.+...+....++.|++|+++|+++.++.+....+|..++|.+++.+.+..+ ||+.|++.
T Consensus        85 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~~~~~~~~  163 (392)
T PRK10473         85 CSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-WQSLFYTM  163 (392)
T ss_pred             HHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988877777 99999987


Q ss_pred             HHHHHHHHHH-HhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHH
Q 016986          215 IVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG  293 (379)
Q Consensus       215 ~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (379)
                      ++..++..+. .+++||+++.    +++++                            .......++.++++.++.....
T Consensus       164 ~~~~~i~~~~~~~~~~~~~~~----~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~  211 (392)
T PRK10473        164 AAMGILVLLLSLFILKETRPA----RAPAA----------------------------SSKPRENSESLLNRFFLSRLVI  211 (392)
T ss_pred             HHHHHHHHHHHHHHcCCCCCc----ccCCc----------------------------cchHHHHHHHHhCHHHHHHHHH
Confidence            7766655444 4556765321    00000                            0001123345666666554433


Q ss_pred             HHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHH
Q 016986          294 STLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEA  373 (379)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~  373 (379)
                      ..+............+.+..+.++.+..+.+......+++.+++.++.+++.||+++|+.+..+..+..++.+++.....
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~  291 (392)
T PRK10473        212 TTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS  291 (392)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33332222222333344444444444334567777888999999999999999999999988888777777666665443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.97  E-value=5.1e-28  Score=224.74  Aligned_cols=316  Identities=18%  Similarity=0.225  Sum_probs=216.4

Q ss_pred             hhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHH
Q 016986           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (379)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~  127 (379)
                      ++++.+..++++.+++.++....++..|.+.+++|++..+.  +++.+.+.+++.+++++.|+++||+|||++++.+.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   94 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQA--ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            45677778888888999999999999999999999987776  8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhh
Q 016986          128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (379)
Q Consensus       128 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w  207 (379)
                      .+++.++.++++|++.+++.|++.|++.+...+....++.|++|+++|+++.++...+..+|..+++.+++.+.+..+ |
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w  173 (496)
T PRK03893         95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG-W  173 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-H
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999988888 9


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHH-H------H-HhhhcCCCCCcch--
Q 016986          208 RICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLA-E------L-SKLDRGDDGDIVK--  277 (379)
Q Consensus       208 r~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~-~~~~~~~~~~~~~--  277 (379)
                      |+.|++.++..++.++.....||++++..++++.++..+..+.....+....... .      . .............  
T Consensus       174 ~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (496)
T PRK03893        174 RALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAV  253 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHH
Confidence            9999886555544444445577765543222111111111111000000000000 0      0 0000000000000  


Q ss_pred             -----------hhhhhcccchhHHH---HHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 016986          278 -----------FEELLYGRHFRVVF---IGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMV  343 (379)
Q Consensus       278 -----------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  343 (379)
                                 .....+.+..+...   ...+......+....++|.|+...++.+..+.+.......++.+++.++.|+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~  333 (496)
T PRK03893        254 LGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGF  333 (496)
T ss_pred             HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       00000000111100   0111111111112234555554444444455678888899999999999999


Q ss_pred             HHHhhCchHHHHHHHHHHHHHHH
Q 016986          344 LMDKLGRKALLQWSFFSMVICSS  366 (379)
Q Consensus       344 l~d~~g~~~~~~~~~~~~~i~~~  366 (379)
                      ++||+++|+.+..+..+..+..+
T Consensus       334 l~dr~g~~~~~~~~~~~~~~~~~  356 (496)
T PRK03893        334 LGDWLGTRKAYVCSLLISQLLII  356 (496)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHH
Confidence            99999999888777655554443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.96  E-value=1.5e-27  Score=213.90  Aligned_cols=277  Identities=19%  Similarity=0.174  Sum_probs=205.6

Q ss_pred             HHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHH
Q 016986           51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII  130 (379)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~  130 (379)
                      +.+..+..+.++........++.+|.+.+++|.+..+.  |++.+.+.++..+++++.|+++||+|||+++..+.++.++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~   83 (381)
T PRK03633          6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQV--GVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAA   83 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667778888888999999999999999977666  9999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Q 016986          131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC  210 (379)
Q Consensus       131 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~  210 (379)
                      +.+++++++|++.++++|+++|++.+...+.....+.+..++++|++++++++.+.++|..+|+.+++.+.+... |...
T Consensus        84 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~  162 (381)
T PRK03633         84 GCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM-SVLP  162 (381)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-chHH
Confidence            999999999999999999999999999988888888899999999999999999999999999999998876542 2333


Q ss_pred             HHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHH
Q 016986          211 FWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV  290 (379)
Q Consensus       211 f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (379)
                      +.. +...... +...+.+.+++    +.+                             +  ++..+.++.++++.++..
T Consensus       163 ~~~-~~~~~~~-~~~~~~~~~~~----~~~-----------------------------~--~~~~~~~~~~~~~~~~~~  205 (381)
T PRK03633        163 WVT-GLVLAAI-LPLLFTRILNQ----QAE-----------------------------N--HDSTSIWPMLKLRQARLG  205 (381)
T ss_pred             HHH-HHHHHHH-HHHHHhcccCC----CCC-----------------------------C--CCCCCHHHHHHhcchHHH
Confidence            222 2211111 11122111110    000                             0  011234556777777654


Q ss_pred             HHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHH
Q 016986          291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSIS  368 (379)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~  368 (379)
                      ....+...........++|.|..+ .+.+....+.......++.+++++..|++.||+++|+.+..+.....++.+.+
T Consensus       206 ~~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~  282 (381)
T PRK03633        206 VNGCIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAM  282 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            443333333333444455666543 23333345677778888999999999999999999998887777666655443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.96  E-value=3.7e-28  Score=222.34  Aligned_cols=287  Identities=13%  Similarity=0.100  Sum_probs=204.4

Q ss_pred             hHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHH
Q 016986           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (379)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  128 (379)
                      +|..+...++.......+....+...|.+.++ |++.++.  +++.+++.+++.++++++|+++||+|||++++.+.++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~--g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~  103 (452)
T PRK11273         27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA  103 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHH--HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHH
Confidence            35544555555555566666667788888888 9887776  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcc----cchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHH-HHHHhhccccccc
Q 016986          129 IIGASISATT----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL-MGSLLIGIPVKEI  203 (379)
Q Consensus       129 ~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~  203 (379)
                      +++.+.++++    ++++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+..+|. +.+|+++..+...
T Consensus       104 ~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  183 (452)
T PRK11273        104 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF  183 (452)
T ss_pred             HHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            9999888775    3788889999999999999888888889999999999999999999999886 4566554333333


Q ss_pred             chhhHHHHHHHHHHHHHH-HHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcch-hhhh
Q 016986          204 AGWWRICFWVSIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVK-FEEL  281 (379)
Q Consensus       204 ~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  281 (379)
                      .+ ||+.|++.++..++. ++..+++||+|+.... ++.++.++...         .   +..+.++.+.+.... .+.+
T Consensus       184 ~g-w~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~---------~---~~~~~~~~~~~~~~~~~~~~  249 (452)
T PRK11273        184 ND-WHAALYMPAFAAILVALFAFAMMRDTPQSCGL-PPIEEYKNDYP---------D---DYNEKHEQELTAKQIFMQYV  249 (452)
T ss_pred             cc-HHHHHHHHHHHHHHHHHHHHHHccCCHhhcCC-CChhhhhhccc---------c---ccccccCCCccHHHHHHHHH
Confidence            45 999999877666554 4445667887653110 11111000000         0   000000000000111 1236


Q ss_pred             hcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhh--CchH
Q 016986          282 LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL--GRKA  352 (379)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~  352 (379)
                      ++++.++...+..++.....+....++|.|+.+..+.+..+.+.......++.+++.++.|+++||+  +||.
T Consensus       250 ~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~  322 (452)
T PRK11273        250 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG  322 (452)
T ss_pred             HcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence            7888888877777666666666667788887766555555567777788899999999999999998  4444

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=7.6e-29  Score=222.73  Aligned_cols=302  Identities=19%  Similarity=0.171  Sum_probs=232.3

Q ss_pred             HHHHHHHHHHHHHHhhhhc-cccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHH
Q 016986           50 FPHVLVATLSSFLFGYHLG-VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (379)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  128 (379)
                      +..+..++...+....+.. ...+.+-.+.+|.++..++.  +.+.++++++++++.++.+.|.||++..+.+....+++
T Consensus        44 l~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l--~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w  121 (495)
T KOG2533|consen   44 LFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQL--GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILW  121 (495)
T ss_pred             HHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhh--hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHH
Confidence            4444445555555555543 34445555778888887777  89999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccc------c
Q 016986          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK------E  202 (379)
Q Consensus       129 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~------~  202 (379)
                      ++..++....+|++.+++.|++.|+.++..+|....+++.|+.+++|+..++++.+...+|.++|.+++..+.      .
T Consensus       122 ~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~  201 (495)
T KOG2533|consen  122 GLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG  201 (495)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence            9999888889999999999999999999999999999999999999999999999999999999999988863      2


Q ss_pred             cchhhHHHHHHHHHHHHHHHH-HHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhh
Q 016986          203 IAGWWRICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEEL  281 (379)
Q Consensus       203 ~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (379)
                      ..| |||.|++.+++.++..+ .++++|++|....-..+.|+ .-..++.          ++.......++.++..+++.
T Consensus       202 ~~g-W~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek-~~~~~~~----------~~~~~~~~~~~~~~~~~~~a  269 (495)
T KOG2533|consen  202 LAG-WRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEK-ELVVERL----------RESPSGGIENKFKWKGFKEA  269 (495)
T ss_pred             cCC-ceeehhHHHHHHHHHHheEEEEecCChhhccccchHHH-HHHHHHH----------HhccCCCcccccCHHHHHHH
Confidence            345 99999998887777655 45679999862100111110 0000000          00001111122556778999


Q ss_pred             hcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHh----hCchHHHHHH
Q 016986          282 LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDK----LGRKALLQWS  357 (379)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~~  357 (379)
                      ++++..|...++.++.....++..++.|.++....+.+..+++.+..+..++++++.+++|+++||    ..+|......
T Consensus       270 ~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~  349 (495)
T KOG2533|consen  270 LKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVF  349 (495)
T ss_pred             HhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            999999999999999999988888889988877444666778899999999999999999999999    5556555544


Q ss_pred             HHHHHHHH
Q 016986          358 FFSMVICS  365 (379)
Q Consensus       358 ~~~~~i~~  365 (379)
                      ..+..+..
T Consensus       350 ~~~~~~~g  357 (495)
T KOG2533|consen  350 LCLYAIIG  357 (495)
T ss_pred             HHHHHHHH
Confidence            44444433

>PRK11043 putative transporter; Provisional

Probab=99.96  E-value=1.6e-27  Score=215.35  Aligned_cols=267  Identities=18%  Similarity=0.195  Sum_probs=203.9

Q ss_pred             HHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhccc
Q 016986           60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR  139 (379)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~  139 (379)
                      ..+..+....+.|.+|.+.+++|.+.++.  +++.+++.++..++++++|+++||+|||++++.+.++..++.+++++++
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   92 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAV--SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE   92 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            44445566677788999999999987776  9999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Q 016986          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA  219 (379)
Q Consensus       140 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~  219 (379)
                      +++.+++.|+++|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+.+..+ ||+.|++.++..+
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~~~~~~~~  171 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFATLFAITL  171 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHH
Confidence            999999999999999888888888999999999999999999988889999999999999988888 9999998877777


Q ss_pred             HHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHH
Q 016986          220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFAL  299 (379)
Q Consensus       220 ~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (379)
                      +..+..++++|+++    +++.++                              +..+++++++++.++...+...+...
T Consensus       172 ~~~~~~~~~~~~~~----~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (401)
T PRK11043        172 LLILPTLRLKPSKK----ARKQSQ------------------------------DALTFKQLLKSKTYLGNVLIFAACSA  217 (401)
T ss_pred             HHHHHHHHcCCCCC----ccccch------------------------------HHHHHHHHHcChhHHHHHHHHHHHHH
Confidence            66665555665532    000000                              01235566777776654443333333


Q ss_pred             HHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Q 016986          300 QQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVIC  364 (379)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~  364 (379)
                      ..+....+.|.+..+ ++.+..+.+.......++.+++.++.+++.||+++|+..........++
T Consensus       218 ~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~  281 (401)
T PRK11043        218 AFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVS  281 (401)
T ss_pred             HHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            333334445555433 3333334566667777888899999999999999888665544444433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.4e-28  Score=207.72  Aligned_cols=288  Identities=15%  Similarity=0.125  Sum_probs=239.5

Q ss_pred             hHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHH
Q 016986           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (379)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  128 (379)
                      ..+.+.+..+......+.....+++.+.+.+|+|+|++|.  +++.++..+..++.-++.|.+.||+|.|++...++++.
T Consensus        12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~--~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~   89 (417)
T COG2223          12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQK--GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL   89 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHH--HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence            3556666666666667777778888899999999998888  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccchH---HHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch
Q 016986          129 IIGASISATTRNLI---GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (379)
Q Consensus       129 ~~~~~~~~~~~~~~---~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (379)
                      .+-++..+++.+.+   ++++++.+.|++ |..+.+...++++|||++++|.++|++. ..++|..+..++++.+....+
T Consensus        90 ~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g  167 (417)
T COG2223          90 LIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG  167 (417)
T ss_pred             HHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh
Confidence            99999999886555   999999999995 5566788899999999999999999999 889999999999998888777


Q ss_pred             h--hHHHHHHHHHHHHHHHHHH-hhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhh
Q 016986          206 W--WRICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL  282 (379)
Q Consensus       206 ~--wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (379)
                      .  ||....+..+..++..+.. +...|.|+.   +.+.++                             ......+.++
T Consensus       168 ~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~---r~~~~~-----------------------------~~~~~~~~v~  215 (417)
T COG2223         168 FLAWRNVAGIYVVALAIAAVLAWLGMNDVPEH---RASVKP-----------------------------QLPAQLKAVF  215 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh---hccccc-----------------------------cchhHHHHHh
Confidence            3  8988888777776655554 445565532   010000                             0003466778


Q ss_pred             cccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Q 016986          283 YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMV  362 (379)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~  362 (379)
                      ++++.|...+..+..+..+.....+++.|+.+.++.++.++|.......+.+.+.++++|+++||+|.+|.+...+..+.
T Consensus       216 ~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~  295 (417)
T COG2223         216 SNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMA  295 (417)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHH
Confidence            89999999999999988888888999999999999999999988888899999999999999999999999888888888


Q ss_pred             HHHHHHHHHH
Q 016986          363 ICSSISLILE  372 (379)
Q Consensus       363 i~~~~~~~~~  372 (379)
                      ++..+.....
T Consensus       296 ~~~~~l~~~~  305 (417)
T COG2223         296 LAAALLSLFL  305 (417)
T ss_pred             HHHHHHHccc
Confidence            7777666543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.96  E-value=9.2e-28  Score=215.48  Aligned_cols=272  Identities=13%  Similarity=0.061  Sum_probs=203.0

Q ss_pred             HHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHH
Q 016986           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (379)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~  134 (379)
                      ..+.+.++..+.........+.+.++++.+..+.  +++.+.+.+++.++++++|+++||+|||++++.+.++.++++++
T Consensus         7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~   84 (393)
T PRK11195          7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQ--PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL   84 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence            3455566666654444555566778888776555  89999999999999999999999999999999999999998888


Q ss_pred             HhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Q 016986          135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (379)
Q Consensus       135 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~  214 (379)
                      ++++.+.   ++.|+++|++.+...|...+++.|++|+++|++++++.+....+|.++||.+++.+.+..  |+..+.+.
T Consensus        85 ~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~--~~~~~~i~  159 (393)
T PRK11195         85 MLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH--AEAALAVC  159 (393)
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            7777664   778999999999999999999999999999999999999999999999999999998753  77777766


Q ss_pred             HHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHH
Q 016986          215 IVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGS  294 (379)
Q Consensus       215 ~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (379)
                      +...++..+..+.+||+|+..  ++++++..+..+             +.          ....+.++++|.++......
T Consensus       160 ~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~-------------~~----------~~~~~~l~~~~~~~~~~~~~  214 (393)
T PRK11195        160 ALIYLLAALFNLFIPRLGARR--PGQSWNPIALLR-------------DF----------FHACRVLWRDKLGRFSLAGT  214 (393)
T ss_pred             HHHHHHHHHHHhcCCCCcccc--cccCCCHHHHHH-------------HH----------HHHHHHHHhCchhHHHHHHH
Confidence            555444444456677765321  101111000000             00          01235667777776655444


Q ss_pred             HHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHH
Q 016986          295 TLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSF  358 (379)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~  358 (379)
                      .+............+.|.++.++.++.+.|......+++.+++.++.+++.||.++++.+..+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~  278 (393)
T PRK11195        215 TLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI  278 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence            4444433444455666777777777778889999999999999999999999988887776664

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.96  E-value=7.1e-28  Score=215.99  Aligned_cols=266  Identities=16%  Similarity=0.203  Sum_probs=208.2

Q ss_pred             hhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHH
Q 016986           66 HLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGML  145 (379)
Q Consensus        66 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~  145 (379)
                      ......|.+|.+.+++|++.++.  +++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.++++++.++
T Consensus         6 ~~~~~~p~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   83 (377)
T PRK11102          6 AIDMYLPALPVIAADFGVSAGSV--QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLI   83 (377)
T ss_pred             HHHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            44556789999999999987777  8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH-
Q 016986          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA-  224 (379)
Q Consensus       146 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~-  224 (379)
                      +.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+..+ ||+.|++.++..++..+. 
T Consensus        84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~  162 (377)
T PRK11102         84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999988777 999999877766665443 


Q ss_pred             HhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhc
Q 016986          225 MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSG  304 (379)
Q Consensus       225 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (379)
                      .++.||+++.   +++.+.                          ..+....++++.++++..+...+...+........
T Consensus       163 ~~~~~~~~~~---~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (377)
T PRK11102        163 FFFIPETLPK---ERRQPF--------------------------HLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSF  213 (377)
T ss_pred             HHhCCccCcc---cccCCC--------------------------ChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            4556765321   000000                          00001123456777777766555544444333333


Q ss_pred             hhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHH
Q 016986          305 INAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVI  363 (379)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i  363 (379)
                      ..+.+.+..+.++.+..+.+.......++.+++.++.+++.||+|+|+.+..+..+..+
T Consensus       214 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~  272 (377)
T PRK11102        214 LTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFI  272 (377)
T ss_pred             HHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            34444555554555555677888888999999999999999999999988877665443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.96  E-value=1.6e-27  Score=215.34  Aligned_cols=280  Identities=18%  Similarity=0.163  Sum_probs=199.7

Q ss_pred             HHHHHHHHHHHHHHhhhhccccchhhh-hhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHH
Q 016986           50 FPHVLVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (379)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  128 (379)
                      .+.+..+.+..++..+......+.+|. +.+++|.+..+.  |++.+++.+++.+++++.|+++||+|||++++.+.++.
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~   91 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLA--GLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGC   91 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH--HHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHH
Confidence            345556667777777788888888886 678899987776  99999999999999999999999999999999999988


Q ss_pred             HHHHHHHhcc---c-----chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccc
Q 016986          129 IIGASISATT---R-----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (379)
Q Consensus       129 ~~~~~~~~~~---~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  200 (379)
                      +++.+.+.++   +     +++.+++.|+++|++.+...+....++.|++|+++|++++++.+.+..+|.++++.+++.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  171 (399)
T PRK05122         92 ALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL  171 (399)
T ss_pred             HHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence            8876665443   2     5678899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhh
Q 016986          201 KEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEE  280 (379)
Q Consensus       201 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (379)
                      .+..+ ||+.+++.++..++..+.....|++++     ++ ++                               +.++++
T Consensus       172 ~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~-------------------------------~~~~~~  213 (399)
T PRK05122        172 YHWGG-LAGLGLLIMLLALLGLLLARPRPAVPP-----VK-GE-------------------------------RLPFRR  213 (399)
T ss_pred             HHccc-HHHHHHHHHHHHHHHHHHHhcCCCCCC-----CC-cc-------------------------------chhHHH
Confidence            88888 999888766554443332222232211     00 00                               001111


Q ss_pred             hhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHH
Q 016986          281 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS  360 (379)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~  360 (379)
                      .++  ..+.......+..+.......+.+.|..+ .+.  ...+.......++.+++.++.|++.||+++|+.+..+..+
T Consensus       214 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~  288 (399)
T PRK05122        214 VLG--RVWPYGMGLALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLV  288 (399)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            121  11111111122222222233344444332 111  2345666778888999999999999999999988888777


Q ss_pred             HHHHHHHHHHHHHh
Q 016986          361 MVICSSISLILEAF  374 (379)
Q Consensus       361 ~~i~~~~~~~~~~~  374 (379)
                      ..++..++...++.
T Consensus       289 ~~~~~~~~~~~~~~  302 (399)
T PRK05122        289 EILGLLLLWLAPSP  302 (399)
T ss_pred             HHHHHHHHHHhccH
Confidence            77776666555443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.96  E-value=1.1e-28  Score=231.78  Aligned_cols=305  Identities=15%  Similarity=0.141  Sum_probs=227.1

Q ss_pred             HHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHH
Q 016986           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (379)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~  133 (379)
                      +...+..+......+..+..++.++++|+++..+.  |++.+.+.++++++.++.+++.||+|||+++.++.++++++++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~--G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~l  113 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSS--GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSF  113 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcc--eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHH
Confidence            33444556666677888899999999999998887  9999999999999999999999999999999999999999999


Q ss_pred             HHhccc---------------------------------------------------chHHHHHHHHHHHhhhchhhHHH
Q 016986          134 ISATTR---------------------------------------------------NLIGMLLGRFVVGTGMGLGPTVA  162 (379)
Q Consensus       134 ~~~~~~---------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~  162 (379)
                      ++++.+                                                   .+..++++|+++|+|.+..++..
T Consensus       114 l~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~  193 (633)
T TIGR00805       114 LLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLG  193 (633)
T ss_pred             HHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcC
Confidence            987653                                                   24567789999999999999999


Q ss_pred             HHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccc---------------------hhhHHHHHHHHHHHHHH
Q 016986          163 ALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA---------------------GWWRICFWVSIVPAAIL  221 (379)
Q Consensus       163 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------------------~~wr~~f~~~~~~~~~~  221 (379)
                      .+++.|++|+++|++++++++.+..+|.++|+++++.+.+..                     |.||..|++.+++.++.
T Consensus       194 ~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~  273 (633)
T TIGR00805       194 ISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLT  273 (633)
T ss_pred             chhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998877532                     12777888888777776


Q ss_pred             HHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHH
Q 016986          222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQ  301 (379)
Q Consensus       222 ~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (379)
                      .+.++++|++.+....+.+.+..++.  ......+.  ..   .............+++++++|.++...+..++.....
T Consensus       274 ~v~l~~~p~~lp~~~~~~~~~~~~~~--~~~~~~~~--~~---~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~  346 (633)
T TIGR00805       274 SIPFFFFPKALPKEGKRVNVDVHETE--KLEKSEDK--SR---KKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAF  346 (633)
T ss_pred             HHHHHhCccccCCcccccchhhhhhh--cccccccc--cc---hhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            66666677653210000000000000  00000000  00   0000000111245678999999999988888888888


Q ss_pred             hhchhHHHHhHHHHHHHcCCChhHHHHHHHH-HHHHHHHHHHHHHHhhCc--hHHHHHHHHHHHHHHHH
Q 016986          302 LSGINAIFYFSSSVFKSAGLSSGLANVFVGI-ANLLGSVVAMVLMDKLGR--KALLQWSFFSMVICSSI  367 (379)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~i~~~~  367 (379)
                      +....++|.|+...++.+..+++.......+ +.++|.+++|+++||++.  |+.+..+.++..+..++
T Consensus       347 ~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       347 NGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            8888899999988888877777777766665 568999999999999874  56666666555555433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.96  E-value=2.6e-27  Score=212.24  Aligned_cols=280  Identities=15%  Similarity=0.109  Sum_probs=204.2

Q ss_pred             HHHHHHhhhhccccchhhh-hhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHH-HhHHHHHHHHHH
Q 016986           58 LSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL-CALPMIIGASIS  135 (379)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~-~~~~~~~~~~~~  135 (379)
                      +.+++..+......+.+|. +++++|.+..+.  |++.+++.++..+.+++.|+++||+|||+.++. +.....++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMI--GLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence            3456667777777788886 578899987776  999999999999999999999999999887654 666667778888


Q ss_pred             hcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhH--HHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Q 016986          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY--GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (379)
Q Consensus       136 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~  213 (379)
                      +++++++.+++.|+++|.+.+...|...++..|+.|+++|++.  .+....+.++|.+++|.+++.+.+..+ ||+.|++
T Consensus        82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~f~~  160 (375)
T TIGR00899        82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-FTVMFLT  160 (375)
T ss_pred             HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-cHHHHHH
Confidence            9999999999999999988888888888899999887777754  577888889999999999999988888 9999999


Q ss_pred             HHHHHHHHHHHH-hhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHH
Q 016986          214 SIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (379)
Q Consensus       214 ~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (379)
                      .++..++..+.. +++||+|+..    +.++                              ...+.++.+++++++....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~------------------------------~~~~~~~~~~~~~~~~~~~  206 (375)
T TIGR00899       161 AALAFVLCGVLVWLFLPSYPRGA----PGAL------------------------------TRLEVRGLLASRDTRLLFV  206 (375)
T ss_pred             HHHHHHHHHHHHHHhCCCcccCc----cccc------------------------------CcchhhhhhcCcchHHHHH
Confidence            887766655544 4578765311    0000                              0011233556666665555


Q ss_pred             HHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHH
Q 016986          293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILE  372 (379)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~  372 (379)
                      ..++............+.|..+.++.+..+.+.......+..+++.++.|++.||+++|+.+.++.+...+....+...+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~  286 (375)
T TIGR00899       207 ACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADN  286 (375)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            44444433333344556666555555555566666666667788889999999999999988877666555554444444


Q ss_pred             Hh
Q 016986          373 AF  374 (379)
Q Consensus       373 ~~  374 (379)
                      +.
T Consensus       287 ~~  288 (375)
T TIGR00899       287 SL  288 (375)
T ss_pred             HH
Confidence            33

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.96  E-value=5.7e-29  Score=223.20  Aligned_cols=276  Identities=16%  Similarity=0.107  Sum_probs=211.3

Q ss_pred             HHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcc
Q 016986           59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT  138 (379)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~  138 (379)
                      +++...++....++..|.+.+++|.+.++.  +++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   80 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDL--GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS   80 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHH--HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh
Confidence            345666777888889999999999988777  999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHH-hhcccccccchhhHHHHHHHHHH
Q 016986          139 RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL-LIGIPVKEIAGWWRICFWVSIVP  217 (379)
Q Consensus       139 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~wr~~f~~~~~~  217 (379)
                      ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .+++.+.+..+ ||+.|++.++.
T Consensus        81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  159 (379)
T TIGR00881        81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWVFIVPGII  159 (379)
T ss_pred             hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999 56666666667 99999987766


Q ss_pred             HHHHHH-HHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHH
Q 016986          218 AAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTL  296 (379)
Q Consensus       218 ~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (379)
                      .++..+ ..++.+|+|+....++..++..+         +.+.   +.++.++.........+++++++.++...+..++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (379)
T TIGR00881       160 AIIVSLICFLLLRDSPQSCGLPPAEEMPNE---------EPDG---DAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVF  227 (379)
T ss_pred             HHHHHHHHheeeCCCccccccCccccCccc---------cccc---ccccccccccchHHHHHHHHhcchHHHHHHHHHH
Confidence            655444 44556766532110000000000         0000   0000001111222345677888888877777666


Q ss_pred             HHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 016986          297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLG  349 (379)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g  349 (379)
                      ..........+.+.|..+.++.+..+.+.......++.+++.++.+++.||..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~  280 (379)
T TIGR00881       228 VYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF  280 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc
Confidence            66666666667777776666666666778888889999999999999999863

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.96  E-value=2.6e-27  Score=213.01  Aligned_cols=284  Identities=14%  Similarity=0.138  Sum_probs=215.2

Q ss_pred             HHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHH
Q 016986           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (379)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~  132 (379)
                      +..++...+..++..+..++.+|.+++++|++..+.  |++.+.+.+++.+++++.|++.||+|||++++.+.++++++.
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~--g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQA--ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            445666777778888888999999999999987776  999999999999999999999999999999999999999998


Q ss_pred             HHHhc---ccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccc-----
Q 016986          133 SISAT---TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA-----  204 (379)
Q Consensus       133 ~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----  204 (379)
                      +++..   .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..++|.+++.+....     
T Consensus        83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~  162 (410)
T TIGR00885        83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS  162 (410)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence            88543   4689999999999999999999999999999999999999999999999999999999987664221     


Q ss_pred             --------------------hhhHHHHHHHHHHHHHHHHHHhh--cCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHH
Q 016986          205 --------------------GWWRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLA  262 (379)
Q Consensus       205 --------------------~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (379)
                                          .+||++|++.+++.++..+...+  .||.++     +  ++                   
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~--~~-------------------  216 (410)
T TIGR00885       163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----S--DA-------------------  216 (410)
T ss_pred             hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----c--cc-------------------
Confidence                                12999998877766655444433  332110     0  00                   


Q ss_pred             HHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCh---hHHHHHHHHHHHHHHH
Q 016986          263 ELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSV  339 (379)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  339 (379)
                             .+.....+.++++++|.++...+..+++.....+..++++.|..+.  ..+.+.   +........+..+|++
T Consensus       217 -------~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~--~~~~~~~~a~~~~~~~~~~~~vGR~  287 (410)
T TIGR00885       217 -------KQISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRL--IPGMTAGFAANYNIGAMVIFFISRF  287 (410)
T ss_pred             -------ccccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                   0000112345677888888777777776666655555555554321  112222   2344455577889999


Q ss_pred             HHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHH
Q 016986          340 VAMVLMDKLGRKALLQWSFFSMVICSSISLILEA  373 (379)
Q Consensus       340 ~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~  373 (379)
                      +++++.||+++|+.+.++.....+.+++....+.
T Consensus       288 ~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~  321 (410)
T TIGR00885       288 IGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGG  321 (410)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999988888887777776666433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.96  E-value=1.6e-27  Score=217.36  Aligned_cols=286  Identities=13%  Similarity=0.063  Sum_probs=207.2

Q ss_pred             hHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHH
Q 016986           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (379)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  128 (379)
                      ++..+....+................|.+++ .|++.++.  +++.+++.++..+++++.|+++||+|||++++.+.++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~  101 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGEL--GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILS  101 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHh--HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHH
Confidence            3555556666666666666666677787775 58887776  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcc----cchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccc-c
Q 016986          129 IIGASISATT----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-I  203 (379)
Q Consensus       129 ~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~  203 (379)
                      +++.++.++.    ++++.+.+.|++.|++.+...+.....+.|++|+++|++++++++.+..+|..+++.+.+.... .
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~  181 (438)
T TIGR00712       102 AAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF  181 (438)
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence            9998887764    5677888899999999999988888999999999999999999999999999888877665433 4


Q ss_pred             chhhHHHHHHHHHHHHHHH-HHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCC-Ccchhhhh
Q 016986          204 AGWWRICFWVSIVPAAILC-LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDG-DIVKFEEL  281 (379)
Q Consensus       204 ~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  281 (379)
                      .+ ||+.|++.++..++.. +..+++||+|+.... ++.++.++  +..   .+.       .+.++.+.+ +....+..
T Consensus       182 ~~-w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~---~~~-------~~~~~~~~~~~~~~~~~~  247 (438)
T TIGR00712       182 ND-WHAALYFPAICAIIVALFAFAMMRDTPQSCGL-PPIEEYRN--DYP---DDY-------NEKAEQELTAKEIFMQYV  247 (438)
T ss_pred             hh-hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC-CCchhccc--ccc---ccc-------ccccccccchHHHHHHHH
Confidence            45 9999999777766654 445567887653110 00000000  000   000       000000000 01112346


Q ss_pred             hcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCch
Q 016986          282 LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRK  351 (379)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~  351 (379)
                      ++++.++...+..++.....+....+.|.|+.+..+.+...++....+..++.+++.+++|+++||++++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  317 (438)
T TIGR00712       248 LPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG  317 (438)
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            7888888877766666666566667778887776666666677888888999999999999999999643

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.96  E-value=6e-27  Score=211.10  Aligned_cols=267  Identities=13%  Similarity=0.153  Sum_probs=204.4

Q ss_pred             hHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHH
Q 016986           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (379)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  128 (379)
                      .++.+.+......+..+......+.+|.+.+++|.+..+.  +++.+++.++..++++++|+++||+|||++++.+.++.
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~   83 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAV--QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIF   83 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence            4555656666666666777777889999999999988777  89999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhH
Q 016986          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (379)
Q Consensus       129 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr  208 (379)
                      .++.+++.++++++.+++.|++.|++.+...+....+..|.+++++|+++.++.+.+..+|..++|.+++.+.+..+ ||
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~  162 (394)
T PRK11652         84 ILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WR  162 (394)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hH
Confidence            99999999999999999999999999988888888899999999999999999999999999999999999888777 99


Q ss_pred             HHHHHHHHHHHHHHH-HHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccch
Q 016986          209 ICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (379)
Q Consensus       209 ~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (379)
                      +.|++.++..++..+ ..++.||+++.    +++++.                             ...++++.++++.+
T Consensus       163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----------------------------~~~~~~~~~~~~~~  209 (394)
T PRK11652        163 ACYLFLLLLGAGVTFSMARWMPETRPA----DARRTR-----------------------------VLASYRTLLSNRRF  209 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccCcc----ccchhH-----------------------------HHHHHHHHHcChHH
Confidence            999987766554433 34556776421    100000                             11234556777777


Q ss_pred             hHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCch
Q 016986          288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRK  351 (379)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~  351 (379)
                      +...+..+.............+.+..+.++.++.+.+.......++.+++..+.+++.||.+++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~  273 (394)
T PRK11652        210 NCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL  273 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6655444443333323233344455554454444556667777788888888899999988743

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=7.3e-27  Score=217.75  Aligned_cols=285  Identities=22%  Similarity=0.191  Sum_probs=216.5

Q ss_pred             hhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchh
Q 016986           79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLG  158 (379)
Q Consensus        79 ~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  158 (379)
                      +.+..+....  .+..+++++|..+|++++|+++||+|||++++.++++..++.++.++++|++.+++.|+++|++.++.
T Consensus       111 ~~~c~~~~~~--~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~  188 (521)
T KOG0255|consen  111 NLVCDSSTLV--ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGP  188 (521)
T ss_pred             ceeeCcHhHH--HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccch
Confidence            3444433333  78999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHc
Q 016986          159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK  238 (379)
Q Consensus       159 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~  238 (379)
                      ......+++|++++++|+.+..+ ......+..+++..++++.+  + ||+.+++..++.++.++..++.||+|+|+..+
T Consensus       189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~-Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~  264 (521)
T KOG0255|consen  189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--D-WRWLFWIISIPSGLFLLLWFLPPESPRWLLSK  264 (521)
T ss_pred             hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--h-HHHHHHHHHHHHHHHHHHHHccCcChHHHHHc
Confidence            99999999999999999999999 77777777777777777776  4 99999999999888877766677999999999


Q ss_pred             CChHHHHHHHHHHhCCC----chhHHHHHH--Hhh-hcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHh
Q 016986          239 GRTAEAEAEFEKLLGGS----HVKSSLAEL--SKL-DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYF  311 (379)
Q Consensus       239 ~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (379)
                      ++.+++.+.+++....+    ......+..  .+. ......+...+.++++.+..+...+...+..+.....+..+   
T Consensus       265 g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl---  341 (521)
T KOG0255|consen  265 GRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGL---  341 (521)
T ss_pred             CchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhh---
Confidence            99999888888765432    111111111  111 11112233557888888765544444333332211111111   


Q ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHH
Q 016986          312 SSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEA  373 (379)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~  373 (379)
                       .......+.+........+.....+....+...|+.|||.....+..+..++++...+...
T Consensus       342 -~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~  402 (521)
T KOG0255|consen  342 -SLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD  402 (521)
T ss_pred             -hhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence             1112234445566777777788888889999999999999999999999999888877654

>PRK12382 putative transporter; Provisional

Probab=99.96  E-value=1.6e-26  Score=208.23  Aligned_cols=276  Identities=16%  Similarity=0.137  Sum_probs=190.9

Q ss_pred             HHHHHHHHHHHhhhhccccchhhh-hhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHH
Q 016986           53 VLVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (379)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~  131 (379)
                      +..+.++.++.....+...+.+|. +.+|+|.+..+.  |++.+++.+++.++++++|+++||+|||++++.+.+...++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~--g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (392)
T PRK12382         17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMV--GIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLA   94 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHH--HHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence            334445556666666777788885 578999987777  99999999999999999999999999999999998877766


Q ss_pred             HHHH---hc-----ccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccccc
Q 016986          132 ASIS---AT-----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (379)
Q Consensus       132 ~~~~---~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  203 (379)
                      .+..   +.     .++++.+++.|+++|++.+...+...+++.|++|+|+|++++++.+.+...|..++|.+++.+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~  174 (392)
T PRK12382         95 GLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH  174 (392)
T ss_pred             HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5432   22     357889999999999999999998999999999999999999999999999999999999998888


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhc
Q 016986          204 AGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLY  283 (379)
Q Consensus       204 ~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (379)
                      .+ ||+.+.+..+..++........||+++      ++++                               +.+.++.++
T Consensus       175 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-------------------------------~~~~~~~~~  216 (392)
T PRK12382        175 FG-FAALALTTMVLPLLAWAFNGTVRKVPA------HAGE-------------------------------RPSLWSVVG  216 (392)
T ss_pred             cC-hHHHHHHHHHHHHHHHHHHHhccCCCC------Cccc-------------------------------CchHHHHHH
Confidence            88 998877654443333222222233211      0000                               000111111


Q ss_pred             ccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Q 016986          284 GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL-SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMV  362 (379)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~  362 (379)
                        ..+...+...+..........+.+.|+.+    .+. ..+......+++.+++.++.|++.||+++|+.+..+..+..
T Consensus       217 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~  290 (392)
T PRK12382        217 --LIWKPGLGLALQGVGFAVIGTFVSLYFAS----KGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVET  290 (392)
T ss_pred             --HHHHhHHHHHHHHHHHhHHHHHHHHHHHh----cCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHH
Confidence              11111111112222222223334444432    222 34556666778888999999999999999998888887777


Q ss_pred             HHHHHHHHHHHh
Q 016986          363 ICSSISLILEAF  374 (379)
Q Consensus       363 i~~~~~~~~~~~  374 (379)
                      ++.+++...++.
T Consensus       291 ~~~~~~~~~~~~  302 (392)
T PRK12382        291 VGLLLLWLAPTA  302 (392)
T ss_pred             HHHHHHHHcccH
Confidence            777666554443

>TIGR00896 CynX cyanate transporter

Probab=99.96  E-value=1e-26  Score=206.66  Aligned_cols=267  Identities=14%  Similarity=0.128  Sum_probs=201.1

Q ss_pred             hhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHH
Q 016986           65 YHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM  144 (379)
Q Consensus        65 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l  144 (379)
                      ......++.+|.+.+++|++.++.  +++.+++.++..+++++.|+++||+|||+++..+.++..++.+.+ .+++++.+
T Consensus        14 ~~~~~~~~~lp~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l   90 (355)
T TIGR00896        14 PALTSVGPLLPQIRSALGMSFSVA--GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALL   90 (355)
T ss_pred             CccccCcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHH
Confidence            334567899999999999988777  999999999999999999999999999999999999888888777 78899999


Q ss_pred             HHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchh-hHHHHHHHHHHHHHHHH
Q 016986          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-WRICFWVSIVPAAILCL  223 (379)
Q Consensus       145 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-wr~~f~~~~~~~~~~~~  223 (379)
                      ++.|++.|++.+...+....++.|++| ++|++++++++.+..+|..+++.+++.+.+..+. ||+.|.+.++..++.. 
T Consensus        91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~-  168 (355)
T TIGR00896        91 FAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL-  168 (355)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-
Confidence            999999999999888888888999986 6899999999999999999999998888766543 9999877655433322 


Q ss_pred             HHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhh
Q 016986          224 AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLS  303 (379)
Q Consensus       224 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (379)
                       ..++|+.++    +++  +                          .+.......++.+|++.++...+...+.....+.
T Consensus       169 -~~~~~~~~~----~~~--~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (355)
T TIGR00896       169 -LAWIPQVRR----RVA--A--------------------------NQTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYS  215 (355)
T ss_pred             -HHHhhhhcc----ccC--C--------------------------CCCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHH
Confidence             223343311    000  0                          0000112345677888777665555555555555


Q ss_pred             chhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHH
Q 016986          304 GINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLG-RKALLQWSFFSMVICSSISLI  370 (379)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~i~~~~~~~  370 (379)
                      ...+.|.|+.+ .+.+..+.+.......++.++++++.|++.||++ ||+.+..+..+..++.+.+.+
T Consensus       216 ~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~  282 (355)
T TIGR00896       216 LIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF  282 (355)
T ss_pred             HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Confidence            55667777654 3444445678888899999999999999999994 566666666666666554444

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00897 2A0118 polyol permease family

Probab=99.96  E-value=2.8e-26  Score=206.95  Aligned_cols=271  Identities=13%  Similarity=-0.007  Sum_probs=193.6

Q ss_pred             HHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHH
Q 016986           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (379)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~  132 (379)
                      +....++.++...........++.+.+|+|.+.++.  +++.+.+.+++.+++++.|+++||+|||+++..+.++.++++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~   92 (402)
T TIGR00897        15 LLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQS--ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGH   92 (402)
T ss_pred             hhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHh--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            334444444444444444556677778999987777  999999999999999999999999999999999999998887


Q ss_pred             HHH---hc-ccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHH-HHHHhhcccccccchhh
Q 016986          133 SIS---AT-TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL-MGSLLIGIPVKEIAGWW  207 (379)
Q Consensus       133 ~~~---~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~~w  207 (379)
                      +++   ++ .++++.+++.|+++|++.+...+....++.|++|+++|++++|+.+.+.++|. .++|.+++.+.+..+ |
T Consensus        93 ~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g-~  171 (402)
T TIGR00897        93 AAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG-E  171 (402)
T ss_pred             HHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-h
Confidence            654   33 35788889999999999988888888889999999999999999999999996 689999988887777 5


Q ss_pred             HHHHHHHHHHHHHHHHH-HhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccc
Q 016986          208 RICFWVSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRH  286 (379)
Q Consensus       208 r~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (379)
                      +..++.......+..+. .++.++.++..  ++++++                          +..+....+++++++|.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--------------------------~~~~~~~~~~~~~~~~~  223 (402)
T TIGR00897       172 MNTLWSALAFVLTGGVIALFSNKDIFTPQ--HMQTRE--------------------------KFSELGKAATILFTNPN  223 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCcc--cccCCc--------------------------chhhHHHHHHHHHcChh
Confidence            55555433332222222 23334332100  000000                          00000123556788888


Q ss_pred             hhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHH
Q 016986          287 FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQ  355 (379)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~  355 (379)
                      ++...+..++.....+....+.|.|..+ ++.+..+.+.......++..++.++.|+++||++||+.+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~  291 (402)
T TIGR00897       224 VLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR  291 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence            8877666666555555556667766644 4544455567777788999999999999999999887653

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=2.1e-26  Score=191.13  Aligned_cols=320  Identities=19%  Similarity=0.208  Sum_probs=241.3

Q ss_pred             cchhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHh
Q 016986           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA  125 (379)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~  125 (379)
                      -+.+|.......++...+.+.....+-+.|.+.+.+|++..+.  +++....+++..+++..+|.++|++|||+.+....
T Consensus        73 grfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~--~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~  150 (528)
T KOG0253|consen   73 GRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQA--PLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTF  150 (528)
T ss_pred             ccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhh--hHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhH
Confidence            3456777777888877777776667778888899999765555  89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch
Q 016986          126 LPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (379)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (379)
                      ...++..++.+.++|+..+++.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.+....+........|
T Consensus       151 l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~g  228 (528)
T KOG0253|consen  151 LVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG  228 (528)
T ss_pred             HHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999 888889999999999999877777 8899999999999888888888


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCch-----------hHHHH-H---HHhh-hc
Q 016986          206 WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHV-----------KSSLA-E---LSKL-DR  269 (379)
Q Consensus       206 ~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-~---~~~~-~~  269 (379)
                       |||.......+..+.++..+++||+|++...+++.+++...++++...+..           .++.+ +   ..+. .+
T Consensus       229 -wr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~  307 (528)
T KOG0253|consen  229 -WRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSS  307 (528)
T ss_pred             -HHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhc
Confidence             999998888888888888889999999999999999998888887544421           11111 1   1111 11


Q ss_pred             CCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCC---------------------C---hhH
Q 016986          270 GDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL---------------------S---SGL  325 (379)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~---~~~  325 (379)
                      ..++...+...++..+-.+..+..-...+..-+..+. ........++ .+.                     .   ...
T Consensus       308 a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg-~VLlttelfq-sgd~c~~~~r~~p~e~e~~~~c~~s~~~dYr  385 (528)
T KOG0253|consen  308 AAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYG-SVLLTTELFQ-SGDACPLYNRFLPTELETRANCPLSVAKDYR  385 (528)
T ss_pred             cccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHh-ccCccccchhcchhHHHhhhcCCccchhHHH
Confidence            2233345566666544444333332222222222221 1111112111 111                     0   113


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHH
Q 016986          326 ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILE  372 (379)
Q Consensus       326 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~  372 (379)
                      -.....+....|.++.+++.||+|||+.+...++++.++.+++....
T Consensus       386 dllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~  432 (528)
T KOG0253|consen  386 DLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK  432 (528)
T ss_pred             HHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc
Confidence            45566788999999999999999999999999999999888776653

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.95  E-value=6.7e-26  Score=205.46  Aligned_cols=287  Identities=19%  Similarity=0.156  Sum_probs=204.9

Q ss_pred             HHHHHHHHHHHhhhhccccchhhhhhhhccCCcchh---HHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHH
Q 016986           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTL---AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (379)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~  129 (379)
                      ...++++.++..+......+.+|.+.+++|.+..+.   ..+++.+++.++..++++++|+++||+|||++++.+.+..+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   95 (408)
T PRK09874         16 LTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMG   95 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHH
Confidence            334556667777777778899999999999886543   24788999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHH
Q 016986          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (379)
Q Consensus       130 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~  209 (379)
                      ++.++++++++++.+++.|++.|++.+ ..+....++.|++|+++|+++.++...+..+|..++|.+++.+.+..+ ||+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~  173 (408)
T PRK09874         96 IVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-LRP  173 (408)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHH
Confidence            999999999999999999999999765 557778899999999999999999999999999999999999888777 999


Q ss_pred             HHHHHHHHHHHHHHHH-hhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchh
Q 016986          210 CFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR  288 (379)
Q Consensus       210 ~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (379)
                      .|++.++..++..+.. ++.+|+++.   .++.++ .+                            ..+..+.++++.++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~----------------------------~~~~~~~~~~~~~~  221 (408)
T PRK09874        174 VFFITASVLFLCFLVTLFCIRENFQP---VSKKEM-LH----------------------------MREVVTSLKNPKLV  221 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCccc---ccchhh-hH----------------------------HHHHHHhCcCCchH
Confidence            9998777666554443 445554311   000000 00                            00112334555544


Q ss_pred             HHHH-HHHHHHHHHhhchhHHHHhHHHHHHHcCC---ChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Q 016986          289 VVFI-GSTLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVIC  364 (379)
Q Consensus       289 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~  364 (379)
                      .... ...+............+.|..+..+....   ..+......+++.+++.+..|++.||++||+.+..+.....++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~  301 (408)
T PRK09874        222 LSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLL  301 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence            3222 22222222222233444454443221111   1234555667788889999999999999999888887777666


Q ss_pred             HHHHHHHHH
Q 016986          365 SSISLILEA  373 (379)
Q Consensus       365 ~~~~~~~~~  373 (379)
                      .+.....++
T Consensus       302 ~~~~~~~~~  310 (408)
T PRK09874        302 LIPMSFVQT  310 (408)
T ss_pred             HHHHHHhcc
Confidence            655554443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.95  E-value=9.4e-27  Score=212.74  Aligned_cols=286  Identities=13%  Similarity=0.102  Sum_probs=203.0

Q ss_pred             hHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHH
Q 016986           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (379)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  128 (379)
                      +|..+..++............++...|.+.+++|.+.++.  +++.+.+.++..++.++.|+++||+|||++++.+.++.
T Consensus        17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   94 (455)
T TIGR00892        17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSET--AWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLA   94 (455)
T ss_pred             chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHH--HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHH
Confidence            4666666666655555555667888999999999988877  89999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccchHHHHH-HHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhh
Q 016986          129 IIGASISATTRNLIGMLL-GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (379)
Q Consensus       129 ~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w  207 (379)
                      ++++++++++++++.+++ .|+++|++.+...+....++.++++ ++|+++.++.+.+..+|..++|.+++.+.+..+ |
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g-w  172 (455)
T TIGR00892        95 SLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG-W  172 (455)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC-h
Confidence            999999999999998875 5799999998877777788899996 789999999999999999999999998888888 9


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccch
Q 016986          208 RICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (379)
Q Consensus       208 r~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (379)
                      |+.|++.++..++..+..+++.+.+... +..+.++..    ..........    .......+...+....+++++|.+
T Consensus       173 r~~f~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  243 (455)
T TIGR00892       173 RGSFLILGGLLLHCCVCGALMRPVGPSQ-RVSKSKSKE----GLPPDGSTKK----LSKKSTAEKINRFLDFSLFTHRGF  243 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCccc-ccccccccc----cCCCCCcccc----ccccchhhhhhhhcchHHhcCchH
Confidence            9999998877666555444433221100 000000000    0000000000    000000000001111257788888


Q ss_pred             hHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 016986          288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL  348 (379)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  348 (379)
                      +......++.....+....+++.|..+ .+....+.+......+++.++++++.|++.||.
T Consensus       244 ~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~  303 (455)
T TIGR00892       244 LVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK  303 (455)
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            877766666666555555666666644 344445567788888999999999999999973

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.95  E-value=7.4e-27  Score=209.60  Aligned_cols=277  Identities=18%  Similarity=0.204  Sum_probs=224.0

Q ss_pred             hhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhccc--chHHHHHHHHHHHhhh
Q 016986           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGM  155 (379)
Q Consensus        78 ~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~  155 (379)
                      ..+++.+.++.  +++.+.++.|+.+++++.|++.||+|-|+++..+.++.++++++...+.  +++.+++.|++||++.
T Consensus        65 ~~~~~ws~~~k--~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~  142 (466)
T KOG2532|consen   65 AGEYDWSSTEK--GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQ  142 (466)
T ss_pred             CceecCCHHHH--HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHH
Confidence            34566666655  9999999999999999999999999999999999999999999988775  4557788999999999


Q ss_pred             chhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccccc-chhhHHHHHHHHHHHHHHHHHH-hhcCCChh
Q 016986          156 GLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-AGWWRICFWVSIVPAAILCLAM-VFCAESPH  233 (379)
Q Consensus       156 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~  233 (379)
                      |..+|....+.+.|.|++||++..++...+..+|.+++..++|.+.+. .| |++.|++.++.+++..+++ ++..|+|+
T Consensus       143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~~~d~P~  221 (466)
T KOG2532|consen  143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLFYSDSPS  221 (466)
T ss_pred             hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            999999999999999999999999999999999999999999999988 66 9999999998888877665 45667775


Q ss_pred             HHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHH
Q 016986          234 WLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSS  313 (379)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (379)
                      .  ++.-.+++.+.+++..             ..+..++....+++++++++.+|...+..+......+....+.|.|+.
T Consensus       222 ~--h~~is~~El~~I~~~k-------------~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~  286 (466)
T KOG2532|consen  222 K--HPNISEKELKYIEKGK-------------SEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLK  286 (466)
T ss_pred             c--CCCCCHHHHHHHHhcc-------------cccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            2  1111222222221110             011111225778999999999999999999999999999999999999


Q ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCc--------hH-HHHHHHHHHHHHHHHHHHHH
Q 016986          314 SVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGR--------KA-LLQWSFFSMVICSSISLILE  372 (379)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--------~~-~~~~~~~~~~i~~~~~~~~~  372 (379)
                      ++++..-.+.|+..++..+...+..+++|.++||..+        || .-.++....+++++.+.+.+
T Consensus       287 ~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~  354 (466)
T KOG2532|consen  287 EVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS  354 (466)
T ss_pred             HHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC
Confidence            9999988889999999999999999999999998754        22 22355555555555544443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.95  E-value=3.3e-26  Score=206.38  Aligned_cols=271  Identities=20%  Similarity=0.173  Sum_probs=192.1

Q ss_pred             HHHhhhhccccchhhhhhhhccCCcchhHHHHHHH--HH---HHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHH
Q 016986           61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVS--MC---LGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS  135 (379)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s--~~---~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~  135 (379)
                      +.+.++...++...+.+.+++..+.++...+.+.+  .+   .++..+++++.|+++||+|||++++.+.++..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            45566777777777778777654222222233333  23   33445789999999999999999999999999999999


Q ss_pred             hcccchH--------HHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccc------
Q 016986          136 ATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK------  201 (379)
Q Consensus       136 ~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~------  201 (379)
                      ++++++.        .+++.|+++|++.+...+....++.|++|+++|++..++.+.+..+|.++++.++..+.      
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~  162 (394)
T TIGR00883        83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD  162 (394)
T ss_pred             hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            9999876        47889999999999999999999999999999999999999999999999988766543      


Q ss_pred             --ccchhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhh
Q 016986          202 --EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFE  279 (379)
Q Consensus       202 --~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (379)
                        +..+ ||+.|++.++..++..+.....+|++++..+++                              +++....+.+
T Consensus       163 ~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~  211 (394)
T TIGR00883       163 ALLEWG-WRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE------------------------------KHKKKRGPIR  211 (394)
T ss_pred             Hhhccc-hHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh------------------------------ccccccCCHH
Confidence              2345 999999877766655555555676653211100                              0011123455


Q ss_pred             hhhcccc--hhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Q 016986          280 ELLYGRH--FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWS  357 (379)
Q Consensus       280 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~  357 (379)
                      +.++++.  ++......++..........+.+.|..+.++.+..+.+.......++.+++.++.|+++||++||+.+...
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~  291 (394)
T TIGR00883       212 ETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIF  291 (394)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence            5666554  44444444444444444445566666555555555567778888899999999999999999999877654


Q ss_pred             HHHHH
Q 016986          358 FFSMV  362 (379)
Q Consensus       358 ~~~~~  362 (379)
                      ..+..
T Consensus       292 ~~~~~  296 (394)
T TIGR00883       292 TVLAA  296 (394)
T ss_pred             HHHHH
Confidence            44433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.95  E-value=1.4e-32  Score=252.31  Aligned_cols=314  Identities=34%  Similarity=0.614  Sum_probs=238.0

Q ss_pred             HHHHHHHHhhhhccccchhhhhh--hhccCCc-------chhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhH
Q 016986           56 ATLSSFLFGYHLGVVNEPLESIS--LDLGFNG-------NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (379)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~-------~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~  126 (379)
                      +.++.+..+++....+...+...  .++..+.       ++...+++.+...+|..+|++++|.++||+|||+.++.+.+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~   84 (451)
T PF00083_consen    5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL   84 (451)
T ss_pred             eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence            34555778888877766665554  2222222       12345899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccc---chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccccc
Q 016986          127 PMIIGASISATTR---NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (379)
Q Consensus       127 ~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  203 (379)
                      +..++.++.++++   |++.++++|+++|++.|...+....++.|..|+++|++..++.+.+..+|.+++..++..+...
T Consensus        85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~  164 (451)
T PF00083_consen   85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY  164 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999   9999999999999999999999999999999999999999999999999999988887665432


Q ss_pred             ch--hhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhh
Q 016986          204 AG--WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEEL  281 (379)
Q Consensus       204 ~~--~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (379)
                      .+  .||+.+.+.++++++..+..+++||+|+|+..+++.+++++.+++..+.+..+++.++..+..+...+....++++
T Consensus       165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  244 (451)
T PF00083_consen  165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDL  244 (451)
T ss_pred             cccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeec
Confidence            22  3999999999888887777788999999999999999988888876555433333333322222222222667888


Q ss_pred             hcccc-hhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChh-HHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHH
Q 016986          282 LYGRH-FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG-LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF  359 (379)
Q Consensus       282 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~  359 (379)
                      ++++. .+.......+.............+|.+...+..+.+.. .......+...++.+++.++.||+|||+++..+..
T Consensus       245 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~  324 (451)
T PF00083_consen  245 FRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLL  324 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            88765 33444444444444444545555666666655555444 44555667777888888899999999999988888


Q ss_pred             HHHHHHHHHH
Q 016986          360 SMVICSSISL  369 (379)
Q Consensus       360 ~~~i~~~~~~  369 (379)
                      .+.++.+.+.
T Consensus       325 ~~~~~~~~~~  334 (451)
T PF00083_consen  325 LMAICSLILG  334 (451)
T ss_pred             cccccccccc
Confidence            8777776654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.95  E-value=2.1e-25  Score=202.90  Aligned_cols=307  Identities=21%  Similarity=0.211  Sum_probs=210.0

Q ss_pred             HHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhccc
Q 016986           60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR  139 (379)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~  139 (379)
                      ....++.....+..++.+..|+|-++..   .|+.++..++.+++.++.|+++|.||||.+++.+.++..+|+++++.++
T Consensus        53 ~~~~~~~~~~~a~~l~~I~~diG~~~~~---~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~  129 (599)
T PF06609_consen   53 VIAAYFVLVLPASILPYINADIGGSDNW---SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ  129 (599)
T ss_pred             HHHHHHHHhccHHHHHHHHHhcCCCccc---hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC
Confidence            3334445555677889999999976544   5999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Q 016986          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA  219 (379)
Q Consensus       140 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~  219 (379)
                      |...++++..+.|+|.|.... ....++|..|.|.|....++...........++.++..+..+.+ |||.|++.++...
T Consensus       130 ~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~-WRw~~~~~~i~~~  207 (599)
T PF06609_consen  130 NMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSG-WRWIFYIFIIWSG  207 (599)
T ss_pred             cHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCC-cchHHHHHHHHHH
Confidence            999999999999999877764 45669999999999988887777666666677777776666666 9999999888766


Q ss_pred             HHHHHHhhcCCChhHHHHcCC---hHHHHHHHHHHh------------------CCC----chhHHH----------HHH
Q 016986          220 ILCLAMVFCAESPHWLYKKGR---TAEAEAEFEKLL------------------GGS----HVKSSL----------AEL  264 (379)
Q Consensus       220 ~~~~~~~~~~e~p~~~~~~~~---~~~~~~~~~~~~------------------~~~----~~~~~~----------~~~  264 (379)
                      +.+++.+++..+|++...+++   ..+..+++|.+.                  +..    +.....          ...
T Consensus       208 i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F  287 (599)
T PF06609_consen  208 IALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAF  287 (599)
T ss_pred             HHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHH
Confidence            665544332222332222221   223333344321                  000    000000          000


Q ss_pred             HhhhcC-CCCCcchhhhhhcc-cchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCC---ChhHHHHHHHHHHHHHHH
Q 016986          265 SKLDRG-DDGDIVKFEELLYG-RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSV  339 (379)
Q Consensus       265 ~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  339 (379)
                      --.+.. ..+++.-..+++++ |.+...++..++....+++.....|.....+++....   ..++...+.+++..+|..
T Consensus       288 ~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~  367 (599)
T PF06609_consen  288 VVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAV  367 (599)
T ss_pred             HHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHH
Confidence            011111 11233344567877 4565556666666666666555666655555555443   356778888999999999


Q ss_pred             HHHHHHHhhCch-HHHHHHHHHHHHHHHHHHHH
Q 016986          340 VAMVLMDKLGRK-ALLQWSFFSMVICSSISLIL  371 (379)
Q Consensus       340 ~~g~l~d~~g~~-~~~~~~~~~~~i~~~~~~~~  371 (379)
                      +.|.+..+++|- +.++++..++.+++.++...
T Consensus       368 i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~  400 (599)
T PF06609_consen  368 ILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV  400 (599)
T ss_pred             HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc
Confidence            999999988774 45556776766665555443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.95  E-value=6.7e-27  Score=212.28  Aligned_cols=284  Identities=16%  Similarity=0.116  Sum_probs=210.2

Q ss_pred             HHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHh-
Q 016986           58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA-  136 (379)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~-  136 (379)
                      ...++..+......+.+|.+.++++.+..+.  |++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+..+ 
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~  101 (417)
T PRK10489         24 IARFISIFGLGLLGVAVPVQIQMMTGSTLQV--GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLAL  101 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHH
Confidence            3344555556666778899988888765555  9999999999999999999999999999999998887777665543 


Q ss_pred             ----cccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Q 016986          137 ----TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (379)
Q Consensus       137 ----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~  212 (379)
                          ..++++.+++.|+++|++.+...+...+++.|+.|+++|+++.++...+..+|..+||.+++.+.+..+ |++.|+
T Consensus       102 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~-~~~~~~  180 (417)
T PRK10489        102 NAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG-VAWNYG  180 (417)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh-hHHHHH
Confidence                257889999999999999988888889999999999999999999999999999999999999888777 999999


Q ss_pred             HHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHH
Q 016986          213 VSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (379)
Q Consensus       213 ~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (379)
                      +.++..++..+..+.+|++++.   +++.++..+                          +....++..+++|.++...+
T Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~  231 (417)
T PRK10489        181 LAAAGTFITLLPLLRLPALPPP---PQPREHPLR--------------------------SLLAGFRFLLASPVVGGIAL  231 (417)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCC---CcccccchH--------------------------HHHHHHHHHHcChHHHHHHH
Confidence            8777766666666667765421   000000000                          00112445567776665554


Q ss_pred             HHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHH
Q 016986          293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILE  372 (379)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~  372 (379)
                      ..++... ......+.+.|..+.++.+....+.......++.+++.++.+++.||.++++.+..+.++..++.+++...+
T Consensus       232 ~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~  310 (417)
T PRK10489        232 LGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMP  310 (417)
T ss_pred             HHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccc
Confidence            4433322 233344566666665565555677888888999999999999999997777777777766666666555444


Q ss_pred             Hh
Q 016986          373 AF  374 (379)
Q Consensus       373 ~~  374 (379)
                      +.
T Consensus       311 ~~  312 (417)
T PRK10489        311 MW  312 (417)
T ss_pred             hH
Confidence            43

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=6.3e-28  Score=202.41  Aligned_cols=260  Identities=15%  Similarity=0.086  Sum_probs=212.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHH
Q 016986           83 FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVA  162 (379)
Q Consensus        83 ~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~  162 (379)
                      ...++.+.|++.+.+.+.+.+.+++.|.+.||+|+|..+++|++.+...++++++.++++.++++|.+||+|.+...+..
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg  180 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG  180 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence            33445556999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCC-CcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCCh
Q 016986          163 ALYVTEVSPP-FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRT  241 (379)
Q Consensus       163 ~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~  241 (379)
                      .++++|.+|+ ++|++++|+...+.++|.++||.+||.+.+..| .+.+|++.++..++...+.+++-|..+     .+ 
T Consensus       181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p~~-----~~-  253 (464)
T KOG3764|consen  181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEPTE-----MD-  253 (464)
T ss_pred             HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCccc-----cC-
Confidence            9999999986 558999999999999999999999999999999 899999998888887777666544311     10 


Q ss_pred             HHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCC
Q 016986          242 AEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL  321 (379)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (379)
                                                 +.+..+..+++++++++..+...................++.|..+.+...+.
T Consensus       254 ---------------------------~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w  306 (464)
T KOG3764|consen  254 ---------------------------PDSTEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGW  306 (464)
T ss_pred             ---------------------------ccccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCc
Confidence                                       01223345678889999888776665555555555566777777776666666


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016986          322 SSGLANVFVGIANLLGSVVAMVLMDKLG--RKALLQWSFFSMVICSSISLILEAFLV  376 (379)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~i~~~~~~~~~~~~~  376 (379)
                      +.|+.+....+..+++..+.|.+.||++  |......+.+..++++....+.+++..
T Consensus       307 ~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~  363 (464)
T KOG3764|consen  307 EVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQ  363 (464)
T ss_pred             ceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHH
Confidence            8899999999999999999999999999  544455666666666666666555543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.95  E-value=7e-26  Score=201.02  Aligned_cols=261  Identities=26%  Similarity=0.412  Sum_probs=217.0

Q ss_pred             HHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHH
Q 016986           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (379)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~  134 (379)
                      .+.+..+...++.....+..|.+.+++|.+..+.  +++.+.+.++..+++++.|+++||+|||+.+..+.++..++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence            3455667777788888899999999998877766  89999999999999999999999999999999999999999999


Q ss_pred             HhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Q 016986          135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (379)
Q Consensus       135 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~  214 (379)
                      ..++++++.+++.|++.|++.+...+...+++.|++|+|+|++.+++.+....+|..+++.+++.+.+..+ ||+.|++.
T Consensus        81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~  159 (352)
T cd06174          81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLIL  159 (352)
T ss_pred             HHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888 99999988


Q ss_pred             HHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHH
Q 016986          215 IVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGS  294 (379)
Q Consensus       215 ~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (379)
                      ++..++..+...+++                                                       |.++...+..
T Consensus       160 ~~~~~~~~~~~~~~~-------------------------------------------------------~~~~~~~~~~  184 (352)
T cd06174         160 AILGLLLALLLLFLL-------------------------------------------------------RLLLLLALAF  184 (352)
T ss_pred             HHHHHHHHHHHHHHH-------------------------------------------------------HHHHHHHHHH
Confidence            777766655544332                                                       2233334444


Q ss_pred             HHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchH-HHHHHHHHHHHHHHHHHHHHH
Q 016986          295 TLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKA-LLQWSFFSMVICSSISLILEA  373 (379)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~i~~~~~~~~~~  373 (379)
                      ++............+.+..+.++.+..+.+.......++.+++.++.+++.||+++|+ .+..+..+..++.+.+...++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  264 (352)
T cd06174         185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS  264 (352)
T ss_pred             HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            4444444444555555555444444555678888999999999999999999999999 888888888888877776554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.95  E-value=2e-25  Score=200.00  Aligned_cols=284  Identities=11%  Similarity=0.021  Sum_probs=215.5

Q ss_pred             HHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHH----HHHhHHHHHH
Q 016986           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAF----QLCALPMIIG  131 (379)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l----~~~~~~~~~~  131 (379)
                      +.+..+......+...|++|.+.+++|.+..+.  |++.+++.++..++++++|+++||+|||+..    ..+..+..+ 
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~i--g~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~-   85 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMI--GLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA-   85 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-
Confidence            445566666667788899999999999987777  9999999999999999999999999985433    222222222 


Q ss_pred             HHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Q 016986          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (379)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f  211 (379)
                       ..+..+++++.+++.|+++|.+.+...|...++..|+  +++|+++.+......++|.+++|.+++.+.+..| ||..|
T Consensus        86 -~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g-~~~~f  161 (382)
T TIGR00902        86 -AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD-EQNIL  161 (382)
T ss_pred             -HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-hhHHH
Confidence             2445788999999999999999988889988887665  4778999999999999999999999999999888 99999


Q ss_pred             HHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHH
Q 016986          212 WVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF  291 (379)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (379)
                      ++.+...++.+ ..+.++|+++    ++++++                         +++.....+.++++|+|+++...
T Consensus       162 ~~~~~~~~~~~-~~~~~~~~~~----~~~~~~-------------------------~~~~~~~~~~~~~l~~~~~~~~l  211 (382)
T TIGR00902       162 AILTAGLAFML-IGFLIKPTIP----PKDAIP-------------------------EDESQGDSAFIALLKNPMNLRFL  211 (382)
T ss_pred             HHHHHHHHHHH-HHHHcCCCCC----CCcccc-------------------------ccccccchhHHHHHcChHHHHHH
Confidence            88655433332 2333444321    110000                         00011123467889999999888


Q ss_pred             HHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHH
Q 016986          292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLIL  371 (379)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~  371 (379)
                      +..++..........+.+.|..+ .+.+....|.......++.+++.+..+++.||+++|+.+.++.+.+.+...++.+.
T Consensus       212 ~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~  290 (382)
T TIGR00902       212 AAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI  290 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH
Confidence            87777777777777777777755 45555567778888889999999999999999999999999999999998888877


Q ss_pred             HHhhhh
Q 016986          372 EAFLVL  377 (379)
Q Consensus       372 ~~~~~~  377 (379)
                      ++.+.+
T Consensus       291 ~~~~~~  296 (382)
T TIGR00902       291 EAFPLI  296 (382)
T ss_pred             hhHHHH
Confidence            776543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.94  E-value=7.6e-25  Score=197.09  Aligned_cols=280  Identities=12%  Similarity=0.048  Sum_probs=199.8

Q ss_pred             HHHHHHHhhhhccccchhh-hhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHH
Q 016986           57 TLSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS  135 (379)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~  135 (379)
                      ....++.........++++ .+.+++|.+..+.  |++.+.+.+...+.+++.|+++||+|||++++.+.++..++.+++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~   93 (400)
T PRK11646         16 LIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMV--GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATM   93 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            3444555555444455555 4678889887766  999999999999999999999999999999999999999999999


Q ss_pred             hcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Q 016986          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI  215 (379)
Q Consensus       136 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~  215 (379)
                      +++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..+||.+++.+. ..+ ||+.|++.+
T Consensus        94 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g-~~~~f~~~~  171 (400)
T PRK11646         94 AIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD-FRLVCATGA  171 (400)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-HHHHHHHHH
Confidence            999999999999999999998888999999999999999999999999999999999999999998 556 999999877


Q ss_pred             HHHHHHHHH-HhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHH
Q 016986          216 VPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGS  294 (379)
Q Consensus       216 ~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (379)
                      +..++..+. .++.||.+.     .+.++                             +...+++++++++.++...+..
T Consensus       172 ~~~~~~~i~~~~~~~~~~~-----~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~  217 (400)
T PRK11646        172 VLFVLAAAFNAWLLPAYKL-----STVRT-----------------------------PVREGMTRVLRDKRFVTYVLTL  217 (400)
T ss_pred             HHHHHHHHHHHHhCCcccc-----cccch-----------------------------hhHHHHHHHHcCchHHHHHHHH
Confidence            666555443 344554210     00000                             0112355677777776544433


Q ss_pred             HHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH-hhCchHHHHHHHHHHHHHHHHHHHHHH
Q 016986          295 TLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMD-KLGRKALLQWSFFSMVICSSISLILEA  373 (379)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~i~~~~~~~~~~  373 (379)
                      +.............|.|..+..+ .+...+......+++...+....+++.| |++.++.+..+..+..++.+++...++
T Consensus       218 ~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~  296 (400)
T PRK11646        218 TGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN  296 (400)
T ss_pred             HHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh
Confidence            33332222233455666655433 3344566666666666655555555555 566566666777777777666655554


Q ss_pred             hh
Q 016986          374 FL  375 (379)
Q Consensus       374 ~~  375 (379)
                      .+
T Consensus       297 ~~  298 (400)
T PRK11646        297 LQ  298 (400)
T ss_pred             HH
Confidence            43

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.94  E-value=1.3e-24  Score=200.04  Aligned_cols=279  Identities=15%  Similarity=0.149  Sum_probs=198.8

Q ss_pred             HHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccc-----hhHHH-HHHHhH
Q 016986           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRA-FQLCAL  126 (379)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~-----Grr~~-l~~~~~  126 (379)
                      ...+++..+..+......++.+|...++.|.+.++.  +.+ +.....+ ++.+++|+++||+     |||+. ++.+.+
T Consensus        14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~i--g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i   89 (491)
T PRK11010         14 SAILLILGFASGLPLALTSGTLQAWMTVENIDLKTI--GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQL   89 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHH
Confidence            334444455566666677788898989989887776  654 3333443 6899999999999     99885 667777


Q ss_pred             HHHHHHHHHhcc---cchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccc-
Q 016986          127 PMIIGASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-  202 (379)
Q Consensus       127 ~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-  202 (379)
                      ..+++.++.++.   ++++.+.+.+++.|++.+...+...++..|++|+++|+++.++...+..+|.++++.++..+.+ 
T Consensus        90 ~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~  169 (491)
T PRK11010         90 LLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR  169 (491)
T ss_pred             HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            777777777665   4788899999999999999999999999999999999999999999999999999999998888 


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhh
Q 016986          203 IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL  282 (379)
Q Consensus       203 ~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (379)
                      ..| ||..|++.++..++..+..++.||+++.   ++++++..                          +....++++++
T Consensus       170 ~~G-Wr~~f~i~a~l~ll~~l~~~~~~e~~~~---~~~~~~~~--------------------------~~~~~~l~~~~  219 (491)
T PRK11010        170 YLG-WQGMYWLMAALLIPCIIATLLAPEPTDT---IPVPKTLE--------------------------QAVVAPLRDFF  219 (491)
T ss_pred             ccC-HHHHHHHHHHHHHHHHHHHHhcCCCccc---cccccchh--------------------------hhHHHHHHHHH
Confidence            456 9999999887776666655567776421   00000000                          00112456677


Q ss_pred             cccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHH-HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Q 016986          283 YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLAN-VFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM  361 (379)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~  361 (379)
                      +++..+......+++.........+.+.|+.+..+.+..+.+... ....++.+++.+++|+++||+++|+.+.++.++.
T Consensus       220 ~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~  299 (491)
T PRK11010        220 GRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQ  299 (491)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            777766655555554444444444555555444444444455655 3455789999999999999999988777665544


Q ss_pred             HHHH
Q 016986          362 VICS  365 (379)
Q Consensus       362 ~i~~  365 (379)
                      ++..
T Consensus       300 ~l~~  303 (491)
T PRK11010        300 GVSN  303 (491)
T ss_pred             HHHH
Confidence            4433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.94  E-value=8.8e-25  Score=195.94  Aligned_cols=279  Identities=12%  Similarity=0.059  Sum_probs=204.6

Q ss_pred             HHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhH----HHHHHHhHHHHHHHHHH
Q 016986           60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR----RAFQLCALPMIIGASIS  135 (379)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr----~~l~~~~~~~~~~~~~~  135 (379)
                      .+......+...|.+|.+.+|+|.+.++.  |++.+++.++..++++++|+++||+|||    +.+.++..+.  .....
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~i--G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~   88 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETI--GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFW   88 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHH--HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHH
Confidence            34444556777889999999999987777  9999999999999999999999999983    3333222222  22334


Q ss_pred             hcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Q 016986          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI  215 (379)
Q Consensus       136 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~  215 (379)
                      ..+++++.+++.|++.|++.+...+...++..++  .++|+++.+......++|..+||.+++.+.++.| ||..|++.+
T Consensus        89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~~~~  165 (382)
T PRK11128         89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILWILT  165 (382)
T ss_pred             HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHH
Confidence            4568999999999999999998888888887776  3568888899999999999999999999999888 999998876


Q ss_pred             HHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHH
Q 016986          216 VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGST  295 (379)
Q Consensus       216 ~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (379)
                      +..++..+..++.||+++    ++++++                          ..++...++++++|+|.++...+..+
T Consensus       166 ~~~~~~~~~~~~~~~~~~----~~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~  215 (382)
T PRK11128        166 AGVASMLLGQLLRPTIMP----QGESRQ--------------------------QESAGWPAWKALLKEPTVWRFLLCVS  215 (382)
T ss_pred             HHHHHHHHHHHccCCCCC----cccccc--------------------------ccccccchHHHHHcChhHHHHHHHHH
Confidence            654444443344444311    100000                          00112345788999999988777666


Q ss_pred             HHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 016986          296 LFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEAFL  375 (379)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~  375 (379)
                      +............+.|..+ .+.+....|.......++.++..++.+++.||+++|+.+..+.+..++..+++...++.+
T Consensus       216 l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~  294 (382)
T PRK11128        216 LLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALP  294 (382)
T ss_pred             HHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            6655555555566666643 344444466777777888888999999999999999999888888888777776666655


Q ss_pred             h
Q 016986          376 V  376 (379)
Q Consensus       376 ~  376 (379)
                      .
T Consensus       295 ~  295 (382)
T PRK11128        295 W  295 (382)
T ss_pred             H
Confidence            3

>PRK10054 putative transporter; Provisional

Probab=99.94  E-value=4.2e-25  Score=198.41  Aligned_cols=279  Identities=12%  Similarity=0.055  Sum_probs=206.2

Q ss_pred             HHHHHHHHHhhhhccccchhh-hhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHH
Q 016986           55 VATLSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (379)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~  133 (379)
                      .+....++.........+.+| .+.+++|++..+.  |++.+++.++..+++++.|+++||+|||++++.+.++.+++.+
T Consensus        11 ~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~   88 (395)
T PRK10054         11 ALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLI--GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI   88 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence            333455555666666566665 4567899987777  9999999999999999999999999999999999999999999


Q ss_pred             HHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Q 016986          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (379)
Q Consensus       134 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~  213 (379)
                      +.+++++++.++++|++.|.+.+...+....+..|..|+++|++++++.+...++|.+++|.+++.+.+ .+ |+..|++
T Consensus        89 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g-~~~~f~~  166 (395)
T PRK10054         89 AIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS-INLPFWL  166 (395)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cCcHHHH
Confidence            999999999999999999988888888899999999999999999999999999999999999998875 45 9999998


Q ss_pred             HHHHHHHHHHHH-hhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHH
Q 016986          214 SIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (379)
Q Consensus       214 ~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (379)
                      .++..++.++.. +++||+++    +++.++ .                            +..+.++.+++|.++...+
T Consensus       167 ~~~~~~i~~i~~~~~~~~~~~----~~~~~~-~----------------------------~~~~~~~~~~~~~~~~~~~  213 (395)
T PRK10054        167 AAICSAFPLVFIQIWVQRSEK----AIATET-G----------------------------SVWSPSVLLQDKALLWFTC  213 (395)
T ss_pred             HHHHHHHHHHHHHHHHhcccc----ccccch-h----------------------------hhhhhhhhccCceehHHHH
Confidence            777766654433 44555421    000000 0                            0011256778888887766


Q ss_pred             HHHHHHHHHhhchhHHHHhHHHHHHHc--CCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Q 016986          293 GSTLFALQQLSGINAIFYFSSSVFKSA--GLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLI  370 (379)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~  370 (379)
                      ..++..........+.+.|.....+..  ....+.......+..+......|++.||.++|+.+..+..+..++...+.+
T Consensus       214 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~  293 (395)
T PRK10054        214 SGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIF  293 (395)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Confidence            666555554444445566655432211  112345555555666667788899999999999888888777777665554

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.94  E-value=5.8e-24  Score=191.30  Aligned_cols=273  Identities=13%  Similarity=0.114  Sum_probs=179.4

Q ss_pred             HHHHHHHHhhhhccccchhhh-hhhhccCCcchhHHHHHHHHHHH-HHHHHHHhHHhhhccchhHHHH-HHHhHHHHHHH
Q 016986           56 ATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLG-GAFIGSTLSGWIADGVGRRRAF-QLCALPMIIGA  132 (379)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~-~~~i~~~~~g~l~d~~Grr~~l-~~~~~~~~~~~  132 (379)
                      ..+..++.........+.+|. +.+++|.+.++.  |++.+...+ +..++.++.++ +||+|||+.+ +.+.+..+++.
T Consensus        20 ~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~   96 (393)
T PRK15011         20 FLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMV--GFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLAC   96 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHH
Confidence            334455666665656676665 578899987776  888776655 55555555555 9999999875 45666667778


Q ss_pred             HHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcc--hhHHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Q 016986          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVR--GTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC  210 (379)
Q Consensus       133 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~  210 (379)
                      ++.+++++++.+++.+.+.|...+...|....++.|+.++++|  +...++.+.+.++|.+++|.+++.+.++.| ||..
T Consensus        97 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-w~~~  175 (393)
T PRK15011         97 TLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS-FTVM  175 (393)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-hHHH
Confidence            8888999999887766555544557788888888898876655  344578888999999999999999988888 9999


Q ss_pred             HHHHHHHHHHHHHH-HhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcc-cchh
Q 016986          211 FWVSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYG-RHFR  288 (379)
Q Consensus       211 f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  288 (379)
                      |++.++..++..+. .+++||+++    +++ ++ .+                       ..+    ..   .++ +..+
T Consensus       176 f~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~-~~-----------------------~~~----~~---~~~~~~~~  219 (393)
T PRK15011        176 YLSAAVAFIVCGVMVWLFLPSMRK----ELP-LA-TG-----------------------TLE----AP---RRNRRDTL  219 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhcCccCC----CCc-cc-cc-----------------------ccc----cc---ccccccHH
Confidence            99887766655544 445777642    110 00 00                       000    00   011 1222


Q ss_pred             HHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHH
Q 016986          289 VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSIS  368 (379)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~  368 (379)
                      ..................+.+.|..+.++.+..+.+.......++.+++.++.|+++||+++|+.+..+.....+....+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~  299 (393)
T PRK15011        220 LLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM  299 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            22222233333333333456666665555555556666666677788899999999999999988776655555444333

>TIGR00901 2A0125 AmpG-related permease

Probab=99.93  E-value=3.3e-24  Score=190.67  Aligned_cols=270  Identities=14%  Similarity=0.080  Sum_probs=191.9

Q ss_pred             ccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccc-----hhHHH-HHHHhHHHHHHHHHHhcc---
Q 016986           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRA-FQLCALPMIIGASISATT---  138 (379)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~-----Grr~~-l~~~~~~~~~~~~~~~~~---  138 (379)
                      ...++..|.+.+|+|++.++.  |+..+. .+...+ .+++|+++||+     ||||. ++.+.+..++...+.++.   
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~--g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~   80 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTI--GFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS   80 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHH--HHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            456778899999999998877  777655 444444 99999999998     89887 466777777777777777   


Q ss_pred             cchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchh-------hHHHH
Q 016986          139 RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-------WRICF  211 (379)
Q Consensus       139 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-------wr~~f  211 (379)
                      .+.+.+....++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.+++.+.+..+.       ||..|
T Consensus        81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f  160 (356)
T TIGR00901        81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIF  160 (356)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHH
Confidence            45666777788888888888999999999999999999999999999999999999999888766552       99999


Q ss_pred             HHHHHHHHHHHHHHhh-cCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccc---h
Q 016986          212 WVSIVPAAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRH---F  287 (379)
Q Consensus       212 ~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  287 (379)
                      ++.++..++..+..++ .||+++.   ++..++..+.                          ....++++++++.   .
T Consensus       161 ~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~  211 (356)
T TIGR00901       161 FWTALLILPGLLVTLFLAKEPQED---ASVPKPLTQA--------------------------VLKPIREFFQRKNMIQA  211 (356)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCcc---cccchhHHHH--------------------------HHHHHHHHHHhcCchHH
Confidence            9988777665555444 4554210   0000000000                          0123456666665   4


Q ss_pred             hHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHH-HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHH
Q 016986          288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVG-IANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSS  366 (379)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~  366 (379)
                      +...+..++............+.|..+ ++.+..+.+......+ ++.+++.+++|++.||+|+|+.+..+.++.++...
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~  290 (356)
T TIGR00901       212 LLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNA  290 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            444444444555555555667777655 4433333455554444 56789999999999999999988888877777666


Q ss_pred             HHHHH
Q 016986          367 ISLIL  371 (379)
Q Consensus       367 ~~~~~  371 (379)
                      ++.+.
T Consensus       291 ~~~~~  295 (356)
T TIGR00901       291 GFVWL  295 (356)
T ss_pred             HHHHH
Confidence            55443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.93  E-value=1.1e-24  Score=221.73  Aligned_cols=280  Identities=10%  Similarity=-0.020  Sum_probs=205.6

Q ss_pred             cchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHH---HhcccchHHHHHH
Q 016986           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTRNLIGMLLG  147 (379)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~  147 (379)
                      ..+.+.+..+++.+.+....+++.+++.+++.++++++|+++||+|||++++.+.++..++.++   +..+++++.++++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  109 (1146)
T PRK08633         30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAV  109 (1146)
T ss_pred             HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            4455666677777766666689999999999999999999999999999999988766655544   3445789999999


Q ss_pred             HHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccccc--------chhhHHHHHHHHHH-H
Q 016986          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI--------AGWWRICFWVSIVP-A  218 (379)
Q Consensus       148 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------~~~wr~~f~~~~~~-~  218 (379)
                      |+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++|+.+++.+...        .++|++.+.+..+. .
T Consensus       110 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (1146)
T PRK08633        110 TFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVA  189 (1146)
T ss_pred             HHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988765        33355555443333 3


Q ss_pred             HHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHH
Q 016986          219 AILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFA  298 (379)
Q Consensus       219 ~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (379)
                      ++.++..+++||+|+....+.+.++ ..                       ........++.+++++.++...+..++..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  245 (1146)
T PRK08633        190 VLGLIFAYRLPKVPAAAPEVFDKKK-YL-----------------------FPKLLWRNLKLLRSDRVLWLAIIGLSYFW  245 (1146)
T ss_pred             HHHHHHHhcCcCCCCCCcccccccc-cc-----------------------cHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            3334444556776532111000000 00                       00001123566778888887766666666


Q ss_pred             HHHhhchhHHHHhHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016986          299 LQQLSGINAIFYFSSSVFKSAGL-SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEAF  374 (379)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~  374 (379)
                      +.......+++.|+...++.+.. ..+++.....++.+++.++.+++.||+++++.+.++.++++++.+++.+..+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (1146)
T PRK08633        246 FISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSL  322 (1146)
T ss_pred             HHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhH
Confidence            55555566777777776666665 67788888999999999999999999998888877777777666666554443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.93  E-value=2e-23  Score=188.44  Aligned_cols=274  Identities=17%  Similarity=0.126  Sum_probs=196.6

Q ss_pred             HHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccc-----hhHH-HHHHHhHHHHHH
Q 016986           58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRR-AFQLCALPMIIG  131 (379)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~-----Grr~-~l~~~~~~~~~~  131 (379)
                      ..++..+...+.....+|.+.++.|++.+++  |++..+...  .+..+++|+++||+     |||| .++.+.++.+++
T Consensus         6 ~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~i--g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          6 LLGFASGLPLALTSGTLQAWMTVEGLDIQTI--GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            3455666667777788999999999998888  888777665  59999999999999     8875 788888888888


Q ss_pred             HHHHhcc---cchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccc-hhh
Q 016986          132 ASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA-GWW  207 (379)
Q Consensus       132 ~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~w  207 (379)
                      ..+.++.   ++++.+++..++.++..+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+.. + |
T Consensus        82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g-w  160 (402)
T PRK11902         82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG-W  160 (402)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC-H
Confidence            7777776   457778888888888888899999999999999999999999999999999999999888888753 6 9


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccch
Q 016986          208 RICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (379)
Q Consensus       208 r~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (379)
                      |..|++.++..++..+..++.||+++.   +++.++..+                          +...++++++++|.+
T Consensus       161 ~~~f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~~~~--------------------------~~~~~~~~l~~~~~~  211 (402)
T PRK11902        161 GNTYLLMAGLMLAGALTTLWAPEPEVP---ARPPRSLGE--------------------------AVVGPLRDFFSRRGA  211 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccc---ccccchhHH--------------------------HHHHHHHHHHhCcCH
Confidence            999999777766655555567765421   110000000                          012246678899988


Q ss_pred             hHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHH-HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Q 016986          288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVG-IANLLGSVVAMVLMDKLGRKALLQWSFFSMVICS  365 (379)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~  365 (379)
                      +..++..++............+.++.+.++.+..+.+......+ ++.+++.++++++.||+++|+.+..+.....+..
T Consensus       212 ~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~  290 (402)
T PRK11902        212 WALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSN  290 (402)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            87766555554433322233333333333333333445544433 4578999999999999999888776665554443

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.93  E-value=6.8e-24  Score=185.74  Aligned_cols=300  Identities=12%  Similarity=0.040  Sum_probs=197.4

Q ss_pred             hccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHH
Q 016986           67 LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLL  146 (379)
Q Consensus        67 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~  146 (379)
                      +...+...|.+.+|+|++.++. .|.+.++++.+++++.++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+
T Consensus        42 R~n~s~a~p~L~~elglT~~qv-~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i  120 (511)
T TIGR00806        42 RPGESFITPYLLTVLNFTEETV-TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL  120 (511)
T ss_pred             hchHHHHHHHHHHHcCCCHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455778899999999998872 299999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH---HHHHHHHHHH
Q 016986          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV---SIVPAAILCL  223 (379)
Q Consensus       147 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~---~~~~~~~~~~  223 (379)
                      .|++.|++.|+.. ....++..|+|+++|+++.++...+..+|.++++++++.+ ...| ||+.+.+   .....++.++
T Consensus       121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~s~g-Wr~y~~Ln~Isl~s~~~a~~  197 (511)
T TIGR00806       121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLG-WISYSTLNIISLVFMTFSVF  197 (511)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC-chhHHHHHHHHHHHHHHHHH
Confidence            9999999999999 9999999999999999999999999999999999999984 4556 8876654   3333444555


Q ss_pred             HHhhcCCChhHHHHcCChHHH---HHHHHHHhCCCchhHHHHHHHh-hhcCCCCCcchhhhhhcccchhHHHHHHHHHHH
Q 016986          224 AMVFCAESPHWLYKKGRTAEA---EAEFEKLLGGSHVKSSLAELSK-LDRGDDGDIVKFEELLYGRHFRVVFIGSTLFAL  299 (379)
Q Consensus       224 ~~~~~~e~p~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (379)
                      ..+++|..++-..-+++.+..   ....+....... ....+..+. ....-..-..++++..+|+......+.-.+..+
T Consensus       198 ~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~  276 (511)
T TIGR00806       198 LALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPG-GKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSA  276 (511)
T ss_pred             HHHhCCCCchhhhhccccccccccccccccCCCCCc-cccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhh
Confidence            567788655433322221100   000000000000 000000000 000000112344556677765544443333333


Q ss_pred             HHhhchhHHHHhHHHHHHHc-C---CChhHHHHHHHHHHHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHHHHHHHHHH
Q 016986          300 QQLSGINAIFYFSSSVFKSA-G---LSSGLANVFVGIANLLGSVVAMVLMDKLGRKA--LLQWSFFSMVICSSISLILEA  373 (379)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~--~~~~~~~~~~i~~~~~~~~~~  373 (379)
                      .    +.-+..|.+...+.. +   .-.|..-++..+.+.+..+..|++-.++.+..  .+.+..++.+...+++...++
T Consensus       277 g----~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~  352 (511)
T TIGR00806       277 G----YYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHD  352 (511)
T ss_pred             H----HHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccc
Confidence            3    333444555444332 1   13456677777778888899999866554432  333444444444455544444


Q ss_pred             hh
Q 016986          374 FL  375 (379)
Q Consensus       374 ~~  375 (379)
                      .|
T Consensus       353 Iw  354 (511)
T TIGR00806       353 IW  354 (511)
T ss_pred             hH
Confidence            44

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=2.9e-23  Score=175.78  Aligned_cols=290  Identities=16%  Similarity=0.199  Sum_probs=235.2

Q ss_pred             HHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHH
Q 016986           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (379)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~  131 (379)
                      .+..+....++.++......+.+|.+++.|+++..+.  +++...++.++.+++++.|++.+|+|+|+.++.|+.+++++
T Consensus        14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a--~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg   91 (422)
T COG0738          14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEA--SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVG   91 (422)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHH--HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            4445566667778888888999999999999998888  99999999999999999999999999999999999999999


Q ss_pred             HHHH---hcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccccc-----
Q 016986          132 ASIS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-----  203 (379)
Q Consensus       132 ~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----  203 (379)
                      +.++   +...++..++++-++.|.|.+...+....+++...++++-.+.+++.+..+++|.+++|++++.+...     
T Consensus        92 ~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~  171 (422)
T COG0738          92 AALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALT  171 (422)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhc
Confidence            9997   46789999999999999999999999999999999998889999999999999999999999988762     


Q ss_pred             -------------chhhHHHHHHHHHHHHHHHHHHhh--cCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhh
Q 016986          204 -------------AGWWRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLD  268 (379)
Q Consensus       204 -------------~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (379)
                                   ...|+++|...+...+++.+....  .|+.+.        ++                        +
T Consensus       172 ~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~--------~~------------------------~  219 (422)
T COG0738         172 MSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV--------AA------------------------P  219 (422)
T ss_pred             cCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc--------cc------------------------c
Confidence                         112778888766666665555443  333211        00                        0


Q ss_pred             cCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 016986          269 RGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL  348 (379)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  348 (379)
                      +..+.+.....+++++|+++...++.+++.........+++.|+.+..+....++.........+.++|++++-++..|+
T Consensus       220 ~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~  299 (422)
T COG0738         220 SLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI  299 (422)
T ss_pred             cccccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            01111111577899999999999999999999888888888888776444555566888889999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhh
Q 016986          349 GRKALLQWSFFSMVICSSISLILEAFL  375 (379)
Q Consensus       349 g~~~~~~~~~~~~~i~~~~~~~~~~~~  375 (379)
                      ...+.+....+...+.++...+.++.+
T Consensus       300 ~~~k~Laf~a~~~ill~~~~~l~~g~v  326 (422)
T COG0738         300 KPEKYLAFYALIAILLLLAVALIGGVV  326 (422)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence            998888877766666666665555543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.93  E-value=2.1e-25  Score=190.61  Aligned_cols=322  Identities=19%  Similarity=0.255  Sum_probs=217.1

Q ss_pred             cchhHHHHHHHHHHHHHHhhhhccccchhhhhhhhc-cCC-----cchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHH
Q 016986           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDL-GFN-----GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR  119 (379)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~-----~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~  119 (379)
                      .++..+.+.++.++.+.+.++...++.+.|.+...+ |-+     ...-..+.+..+..+|..+|++++|++.|++|||+
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~  115 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK  115 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence            345577888899999999999999999998876654 222     11222278899999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHhccc-------chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHH
Q 016986          120 AFQLCALPMIIGASISATTR-------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMG  192 (379)
Q Consensus       120 ~l~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  192 (379)
                      ++...++++.+++++++++.       -+.++...|++.|+|.|+-+|...++.+|....+.||..++..-+..+.|.+.
T Consensus       116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila  195 (538)
T KOG0252|consen  116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA  195 (538)
T ss_pred             hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence            99999999999999887763       25678889999999999999999999999999999999988877767766666


Q ss_pred             HHhhccccc----ccc----------hhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcC-ChHHHHHHHHHHhCCCch
Q 016986          193 SLLIGIPVK----EIA----------GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKG-RTAEAEAEFEKLLGGSHV  257 (379)
Q Consensus       193 ~~~~~~~l~----~~~----------~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~-~~~~~~~~~~~~~~~~~~  257 (379)
                      |.+++-.+.    ...          +-||..|.+++++++..+...+.+||++++..... +.+.+.+..++....   
T Consensus       196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~---  272 (538)
T KOG0252|consen  196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSV---  272 (538)
T ss_pred             ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhcccccccc---
Confidence            555543332    111          23999999999999988888888999998763222 222222211111111   


Q ss_pred             hHHHHHHHhhhcCCCCCc---chhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChh----------
Q 016986          258 KSSLAELSKLDRGDDGDI---VKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG----------  324 (379)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  324 (379)
                        ..++.+..+...+.+.   ..+...+..++. ..++......+..-........+...+++..+...+          
T Consensus       273 --~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg-~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~v  349 (538)
T KOG0252|consen  273 --DIEAESTAESDVPPPSNSFGLFSRLFLRWHG-KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKV  349 (538)
T ss_pred             --ccchhhccccCCCCcccccchHHHHHHHHHH-HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHH
Confidence              0000011111111111   123333333322 333344444444444444455556666653332211          


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHH
Q 016986          325 --LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEA  373 (379)
Q Consensus       325 --~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~  373 (379)
                        ....+..++.+.|..+...++|++||+++.+.+++++.+..+.+....+
T Consensus       350 A~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~  400 (538)
T KOG0252|consen  350 AEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYN  400 (538)
T ss_pred             HHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcc
Confidence              1222333444457777888999999999999999999998888765543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.92  E-value=2.5e-23  Score=187.59  Aligned_cols=289  Identities=18%  Similarity=0.129  Sum_probs=194.3

Q ss_pred             HHHHHHHHHhhhhccccchhhhh-hhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHH
Q 016986           55 VATLSSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (379)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~  133 (379)
                      .+....++.........+.+|.+ .+++|.+..+.  |++.+++.++..++++++|+++||+|||+.++.++...+++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~   83 (396)
T TIGR00882         6 MFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDT--GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA   83 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            34444555555566666777765 45689887777  9999999999999999999999999999999887766655443


Q ss_pred             HH---hccc-----chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch
Q 016986          134 IS---ATTR-----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (379)
Q Consensus       134 ~~---~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (379)
                      ..   .+.+     .+...++.|++.|++.+...+....+..|..+  +++...+......++|.+++|.+++.+.+. +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-~  160 (396)
T TIGR00882        84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSI-D  160 (396)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhcc-C
Confidence            22   2221     23345667889999888888888777777533  345667777788889999999999987664 5


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhh-cCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcc
Q 016986          206 WWRICFWVSIVPAAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYG  284 (379)
Q Consensus       206 ~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (379)
                       ||+.|++.++..++..+..++ .+|+|+.    ++.++..                     ..+.++.+..+.++++|+
T Consensus       161 -~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---------------------~~~~~~~~~~~~~~~l~~  214 (396)
T TIGR00882       161 -PQIVFWLGSGFALILMLLLMFAKPKAPSS----ATVANAL---------------------GANASAFSLKLALELFRQ  214 (396)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHhCCCCchh----hhhhccc---------------------ccccCCCCHHHHHHHHcC
Confidence             999999987777766555444 3443221    0000000                     000111223456788999


Q ss_pred             cchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCC---ChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Q 016986          285 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM  361 (379)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~  361 (379)
                      |.++...+..+...........+.+.|.+..++..+.   ..+.......+...++.+..+++.||+++|+.+.++..+.
T Consensus       215 ~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~  294 (396)
T TIGR00882       215 RKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIM  294 (396)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            9887665554444333333334566676665432222   2456677777888889999999999999999988888877


Q ss_pred             HHHHHHHHHHHHh
Q 016986          362 VICSSISLILEAF  374 (379)
Q Consensus       362 ~i~~~~~~~~~~~  374 (379)
                      ++...+....++.
T Consensus       295 ~l~~~~~~~~~~~  307 (396)
T TIGR00882       295 SVRIIGSSFATTA  307 (396)
T ss_pred             HHHHHHHHhcCCh
Confidence            7766654444433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.92  E-value=9.7e-24  Score=214.24  Aligned_cols=263  Identities=13%  Similarity=0.071  Sum_probs=193.2

Q ss_pred             hhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHH---HhHHHHHHHHHHhcccchHHHHHHHHHHH
Q 016986           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL---CALPMIIGASISATTRNLIGMLLGRFVVG  152 (379)
Q Consensus        76 ~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  152 (379)
                      .+..+.+.+.. ...++..+++.+.++++++++|+++||+|||+++..   +.+...+..+.....+++++++++|+++|
T Consensus        41 ~~~~~~~~~~~-~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~g  119 (1140)
T PRK06814         41 GLSGALGAYNN-ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMG  119 (1140)
T ss_pred             HhccccccchH-HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34444443322 234788999999999999999999999999997533   22233333333344589999999999999


Q ss_pred             hhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhhcCCCh
Q 016986          153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESP  232 (379)
Q Consensus       153 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p  232 (379)
                      ++.+...|+..+++.|++|+++|++++++.+++..+|.++||.+++.+....+ |++.|+..++..++.+++.+++|+++
T Consensus       120 i~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        120 IHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN-FVILVALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             HHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            99999999999999999999999999999999999999999999999998888 99999555555555555556666653


Q ss_pred             hHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhH
Q 016986          233 HWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFS  312 (379)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (379)
                      ..   ++..+......+                       .....++.+.+++.++...+..++..+.......+++.|+
T Consensus       199 ~~---~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  252 (1140)
T PRK06814        199 NA---APDLKIDRNIIR-----------------------STITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLA  252 (1140)
T ss_pred             CC---CCCCeeccchHH-----------------------HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            20   000000000000                       0012466777888888888877777766666677888888


Q ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHH
Q 016986          313 SSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSS  366 (379)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~  366 (379)
                      .+.++......+.+....+++.++|.++.|+++++..+++.+..+.++.+++.+
T Consensus       253 ~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  306 (1140)
T PRK06814        253 KETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGL  306 (1140)
T ss_pred             HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHH
Confidence            877776666788899999999999999999999887766655555544444443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.91  E-value=6.4e-23  Score=186.36  Aligned_cols=288  Identities=17%  Similarity=0.105  Sum_probs=181.2

Q ss_pred             HHHHHHhhhhccccchhhhh-hhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHH-
Q 016986           58 LSSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS-  135 (379)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~-  135 (379)
                      ...++.....+...+.+|.. .+++|++..+.  |++.+++.++..++++++|+++||+|||++++++..+.+++.... 
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~--g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~   94 (420)
T PRK09528         17 LFFFFFFFIWSSWFSFFPIWLHDINGLSGTDT--GIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFF   94 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            34444444444445666554 55599987777  999999999999999999999999999999988766655443321 


Q ss_pred             --hccc-----chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhH
Q 016986          136 --ATTR-----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (379)
Q Consensus       136 --~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr  208 (379)
                        ..++     .....++.+++.|.+.....+....+..+ . .+++++.++.......+|..++|.+++.+.+. + |+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~-~~  170 (420)
T PRK09528         95 IYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI-N-PQ  170 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc-C-ch
Confidence              1111     11112233444444333333333333322 2 24567788888888899999999999988764 4 89


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchh
Q 016986          209 ICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR  288 (379)
Q Consensus       209 ~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (379)
                      +.|++.++..++.++..++.+++++..  ++..++..                      ++.+.....+.++.+|+|.++
T Consensus       171 ~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~~~~l~~~~~~  226 (420)
T PRK09528        171 INFWLGSGSALILLVLLFFAKPDAPST--AKVANALG----------------------ANASAVSLKDALALLKLPKFW  226 (420)
T ss_pred             HhHHHHHHHHHHHHHHHhcccccccch--hhhccchh----------------------cccccccHHHHHHHccCCCeE
Confidence            999988777766665555544332110  00000000                      001111223455678888877


Q ss_pred             HHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCC---ChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Q 016986          289 VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICS  365 (379)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~  365 (379)
                      ...+................+.|..+.++..+.   ..+.......++.+++.++.|++.||+++|+.+..+..+..+..
T Consensus       227 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~  306 (420)
T PRK09528        227 FLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRI  306 (420)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHH
Confidence            655544444333333344566666655443332   24567777788888999999999999999999888888887777


Q ss_pred             HHHHHHHHhh
Q 016986          366 SISLILEAFL  375 (379)
Q Consensus       366 ~~~~~~~~~~  375 (379)
                      +++.+.++.+
T Consensus       307 ~l~~~~~~~~  316 (420)
T PRK09528        307 IGSGFATGPL  316 (420)
T ss_pred             HHHHhcccHH
Confidence            7766555544

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.91  E-value=1.6e-22  Score=185.34  Aligned_cols=175  Identities=14%  Similarity=0.162  Sum_probs=140.1

Q ss_pred             HHHHHHHHHHHHHhhhhcccc-chhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhcc-chhHHHHHHHhHHH
Q 016986           51 PHVLVATLSSFLFGYHLGVVN-EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPM  128 (379)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~~  128 (379)
                      +.+..+++..+...+...... .....+.+++|++.++.  +++.+.+.....+..++.|+++|| +|||++++.+.+++
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a--~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~   91 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQA--FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVL   91 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHH
Confidence            334444455555555444333 34456678899987776  789999998888889999999999 99999999999999


Q ss_pred             HHHHHHHhcccchHH-HHHHHHHHHhhhchhhHHHHHHHHhhcCCC--cchhHHHHHHHHHHHHHHHHHhhcccccccch
Q 016986          129 IIGASISATTRNLIG-MLLGRFVVGTGMGLGPTVAALYVTEVSPPF--VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (379)
Q Consensus       129 ~~~~~~~~~~~~~~~-l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (379)
                      .++++.++++++... ++++|+++|+|.|...+...++++|.+|++  +|+++.++++.+.++|..+||.+++++.++.|
T Consensus        92 ~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g  171 (489)
T PRK10207         92 AIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG  171 (489)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999877555 457899999999999999999999999877  45789999999999999999999999999988


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhc
Q 016986          206 WWRICFWVSIVPAAILCLAMVFC  228 (379)
Q Consensus       206 ~wr~~f~~~~~~~~~~~~~~~~~  228 (379)
                       ||+.|++.++..++.++.+.+.
T Consensus       172 -w~~~F~i~~i~~~~~~~~~~~~  193 (489)
T PRK10207        172 -YSVTYNLCGAGLIIALLVYFAC  193 (489)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHc
Confidence             9999998655443333333333

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.91  E-value=2.5e-23  Score=189.26  Aligned_cols=322  Identities=14%  Similarity=0.104  Sum_probs=234.3

Q ss_pred             chhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhH
Q 016986           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (379)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~  126 (379)
                      .+.|.+....++.+....-.....+.+.+.++++++.+.++.  +|+.++..-...+.+|+.+.+.||+|.|.+.+.|.+
T Consensus        42 G~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~--~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~  119 (509)
T KOG2504|consen   42 GWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQI--AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL  119 (509)
T ss_pred             CeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHH--HHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence            344777777777766665555666788999999999988886  899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccchHHHHHH-HHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch
Q 016986          127 PMIIGASISATTRNLIGMLLG-RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (379)
Q Consensus       127 ~~~~~~~~~~~~~~~~~l~~~-r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (379)
                      +.+++.++.+++++++++++. -++.|+|.|..+.....++..+|+ |+|+.+.|+...+.++|.++-|.+...+.+..|
T Consensus       120 v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G  198 (509)
T KOG2504|consen  120 VAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG  198 (509)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC
Confidence            999999999999999999886 688899999999999999998885 679999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcCC-ChhHHHHcCChHHHHHHHH-----------HHhCCCc---hh---HHHHHHHhh
Q 016986          206 WWRICFWVSIVPAAILCLAMVFCAE-SPHWLYKKGRTAEAEAEFE-----------KLLGGSH---VK---SSLAELSKL  267 (379)
Q Consensus       206 ~wr~~f~~~~~~~~~~~~~~~~~~e-~p~~~~~~~~~~~~~~~~~-----------~~~~~~~---~~---~~~~~~~~~  267 (379)
                       ||+.+++.+.+.+-.++....+.+ +++.   +++.++..+...           ......+   ..   .......+.
T Consensus       199 -~r~~~l~~~~~~l~~~~~~~~~rp~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (509)
T KOG2504|consen  199 -WRGALLIFGGISLNVLVAGALLRPLSPPK---KPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRG  274 (509)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHcCCCCcCC---CchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhC
Confidence             999999876666555555444333 2210   000000000000           0000000   00   001111111


Q ss_pred             hcCCC--CCcch-h---hhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Q 016986          268 DRGDD--GDIVK-F---EELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVA  341 (379)
Q Consensus       268 ~~~~~--~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (379)
                      ++...  ..+.. .   .++++++.++...+...+....+......++.|.. ..+....++..+....++..++++++.
T Consensus       275 ~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~  353 (509)
T KOG2504|consen  275 PDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIIL  353 (509)
T ss_pred             CccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhh
Confidence            11111  11112 2   58899999988888877777776666666666655 344455567789999999999999999


Q ss_pred             HHHHHhhC--chHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016986          342 MVLMDKLG--RKALLQWSFFSMVICSSISLILEAFLV  376 (379)
Q Consensus       342 g~l~d~~g--~~~~~~~~~~~~~i~~~~~~~~~~~~~  376 (379)
                      |++.|+..  ++....++.+..+++.+.+.+.++++.
T Consensus       354 G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~  390 (509)
T KOG2504|consen  354 GLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVG  390 (509)
T ss_pred             hhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            99999976  445666777777777777777666643

>TIGR00889 2A0110 nucleoside transporter

Probab=99.89  E-value=7.8e-21  Score=171.82  Aligned_cols=274  Identities=13%  Similarity=0.049  Sum_probs=183.0

Q ss_pred             HHHHHHhhhhccc-cchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchh-HHHHHHHhHHHHHHHHHH
Q 016986           58 LSSFLFGYHLGVV-NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRAFQLCALPMIIGASIS  135 (379)
Q Consensus        58 ~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Gr-r~~l~~~~~~~~~~~~~~  135 (379)
                      ...+......... ++..+.+.+++|++..+.  |++.+++.++..++++++|+++||+|| |+++.++.++..++..+.
T Consensus         9 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~i--Gl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~   86 (418)
T TIGR00889         9 FMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEI--GWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA   86 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            3344444454443 455566778899987777  999999999999999999999999965 888888898888888888


Q ss_pred             hcccchHHHHHHHHHHHhhhchhhHHHHHHHHhh--------cCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhh
Q 016986          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV--------SPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (379)
Q Consensus       136 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w  207 (379)
                      .+.++++.+.+.|++.|++.+...+...++..+.        .....|.+..|      .+|.+++|.+++.+....+ |
T Consensus        87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~-~  159 (418)
T TIGR00889        87 AQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELS-N  159 (418)
T ss_pred             HHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccch-h
Confidence            9999999999999999998877777665543222        22233445444      3677777877776643333 5


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccch
Q 016986          208 RICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (379)
Q Consensus       208 r~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (379)
                      +. |++.++..++..+..+++||+|+.   +++++...+                         +....+.++++|+|.+
T Consensus       160 ~~-f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~~~~-------------------------~~~~~~~~~~~k~~~~  210 (418)
T TIGR00889       160 IQ-LYITAGSSALLGVFALTLPDIPVA---KSTAKMSIK-------------------------VMLGLDAFILFKNKRM  210 (418)
T ss_pred             HH-HHHHHHHHHHHHHHHhcCCCCCCC---ccccccCHH-------------------------HHhhhhHHHHhcCCCe
Confidence            54 445555455554555667876521   110000000                         0001134567888888


Q ss_pred             hHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcC--------CChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHH
Q 016986          288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAG--------LSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF  359 (379)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~  359 (379)
                      +...+..++............+.|..+. +.+.        ...+.......+..+++.+..|+++||+|+|+.+.++.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~  289 (418)
T TIGR00889       211 AIFFFFSMLLGAPLQITNIFGNGFLHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLV  289 (418)
T ss_pred             eeHHHHHHHHHhHHHHHHHhHHHHHHHh-cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            7776666665444333333444444332 2111        234677888888999999999999999999999999888


Q ss_pred             HHHHHHHHHHH
Q 016986          360 SMVICSSISLI  370 (379)
Q Consensus       360 ~~~i~~~~~~~  370 (379)
                      +..++..++..
T Consensus       290 ~~~v~~~l~~~  300 (418)
T TIGR00889       290 AWALRFGFFAY  300 (418)
T ss_pred             HHHHHHHHHHH
Confidence            88777655544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.89  E-value=2.1e-22  Score=168.44  Aligned_cols=140  Identities=24%  Similarity=0.273  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhh
Q 016986           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV  169 (379)
Q Consensus        90 ~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~  169 (379)
                      .|.+.+.|.+.+++.++.+|.++||+|||+++++|++..++...+.+.++|+..++++|++.|+..|-.. +..++++|.
T Consensus        70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~-v~rAiisdV  148 (451)
T KOG2615|consen   70 AGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLS-VIRAIISDV  148 (451)
T ss_pred             hhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchH-HHHHHHHhh
Confidence            4899999999999999999999999999999999999999999999999999777777999999876554 677999999


Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHhhcccccc---cchhhHHHHHH----HHHHHHH-HHHHHhhcCCCh
Q 016986          170 SPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE---IAGWWRICFWV----SIVPAAI-LCLAMVFCAESP  232 (379)
Q Consensus       170 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~wr~~f~~----~~~~~~~-~~~~~~~~~e~p  232 (379)
                      +++|+|+++++..+..+++|.++||.+|+++..   ..+  +.+|..    ..+.+.. .....+++||+-
T Consensus       149 ~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g--~~p~alP~~~v~i~a~~~v~~~~~~lpETL  217 (451)
T KOG2615|consen  149 VSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG--SYPFALPCLLVFILAAGDVTFFPWFLPETL  217 (451)
T ss_pred             cChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc--cCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            999999999999999999999999999999988   334  222222    2222222 233457789984

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.89  E-value=9.9e-21  Score=173.53  Aligned_cols=171  Identities=15%  Similarity=0.149  Sum_probs=144.7

Q ss_pred             HHHHHHHHHHhhhhccccchhhhhh-hh--ccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhcc-chhHHHHHHHhHHHH
Q 016986           54 LVATLSSFLFGYHLGVVNEPLESIS-LD--LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMI  129 (379)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~-~~--~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~~~  129 (379)
                      ..+....+...+......+.+|.+. ++  +|++..+.  +++.+++.++..++++++|+++|| +|||+++.++.++.+
T Consensus        13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~a--g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~   90 (475)
T TIGR00924        13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQA--FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLM   90 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHH
Confidence            3444555666666655566677664 44  78876666  999999999999999999999999 899999999999999


Q ss_pred             HHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCc---chhHHHHHHHHHHHHHHHHHhhcccccccchh
Q 016986          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV---RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW  206 (379)
Q Consensus       130 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  206 (379)
                      ++.++.+++++++.+++.|++.|+|.|...+...++++|++|+++   |+++.++++.+.++|.++||.+++.+.+..+ 
T Consensus        91 ~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g-  169 (475)
T TIGR00924        91 LGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG-  169 (475)
T ss_pred             HHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            999999999999999999999999999999999999999998754   8889999999999999999999999998888 


Q ss_pred             hHHHHHHHHHHHHHHHHHHhh
Q 016986          207 WRICFWVSIVPAAILCLAMVF  227 (379)
Q Consensus       207 wr~~f~~~~~~~~~~~~~~~~  227 (379)
                      ||+.|.+.++..++..+.+++
T Consensus       170 ~~~~f~~~~~~~~~~~l~~~~  190 (475)
T TIGR00924       170 YHVGFNLAAVGMVIGLLTFFA  190 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            999999877655554444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.88  E-value=8.6e-21  Score=173.55  Aligned_cols=292  Identities=17%  Similarity=0.159  Sum_probs=215.8

Q ss_pred             HHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHH
Q 016986           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (379)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~  134 (379)
                      .++.+.+...++..+.....+.+..+.  +.+....+++..+..+...+.++++|.++||++||++++.+.++..+..+.
T Consensus        14 ~lw~a~~iS~lG~~~~~va~~wlv~~l--t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~   91 (524)
T PF05977_consen   14 RLWIAQLISNLGDWMQTVALAWLVTQL--TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALL   91 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence            455555566666555556666666554  445555699999999999999999999999999999999998877665544


Q ss_pred             Hhcc-----cchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHH
Q 016986          135 SATT-----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (379)
Q Consensus       135 ~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~  209 (379)
                      .++.     .+.+.+++.-++.|++.+...|...+++.|..|+++...+.++.+...++..++||.++|.+....| -.+
T Consensus        92 L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-~~~  170 (524)
T PF05977_consen   92 LAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG-AAA  170 (524)
T ss_pred             HHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HHH
Confidence            4332     4788899999999999999999999999999999999999999999999999999999999998887 578


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhH
Q 016986          210 CFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRV  289 (379)
Q Consensus       210 ~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (379)
                      .|.+.++..++.++.....+++++   +++..++  +..+                       .-...++-+.++|..+.
T Consensus       171 ~f~inalsfl~~i~~l~~~~~~~~---~~~~~~e--~~~~-----------------------~l~~G~ryv~~~~~l~~  222 (524)
T PF05977_consen  171 AFLINALSFLISILALLRWKPPPP---PSSLPRE--RFFS-----------------------ALREGLRYVRSSPPLRS  222 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHcccccc---ccccchh--hhhh-----------------------hHHHHHHHHhcchHHHH
Confidence            888876655554444444433211   0110000  0000                       01123344455666666


Q ss_pred             HHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Q 016986          290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISL  369 (379)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~  369 (379)
                      .++..+++.+........+|.+..+.++......|++....++|.++|.++.+++.+|+++++++..+.++.+++.+.+.
T Consensus       223 ~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~la  302 (524)
T PF05977_consen  223 VLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLA  302 (524)
T ss_pred             HHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHh
Confidence            55555555554444455667777776666666678999999999999999999999999999988888888888888888


Q ss_pred             HHHHhhhh
Q 016986          370 ILEAFLVL  377 (379)
Q Consensus       370 ~~~~~~~~  377 (379)
                      +.++.+..
T Consensus       303 l~~~~~~~  310 (524)
T PF05977_consen  303 LSPSFWLA  310 (524)
T ss_pred             cchHHHHH
Confidence            87776543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PTZ00207 hypothetical protein; Provisional

Probab=99.88  E-value=4.1e-20  Score=169.69  Aligned_cols=174  Identities=17%  Similarity=0.120  Sum_probs=134.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHH
Q 016986           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (379)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~  127 (379)
                      ++|..+..........+... ..+.+.|.+++++|++..+.  +++.++. .....++++.|++.||+|||++++++.++
T Consensus        25 ~Rw~~lva~~~~~~~~g~~y-~fsv~s~~L~~~lgls~~~l--~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll  100 (591)
T PTZ00207         25 RRFALLVLGAFCSICTSFMY-AFNLISGAMQARYNLTQRDL--STITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTV  100 (591)
T ss_pred             chHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcCHHHH--HHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            44555555444444444332 34567888999999987776  7777763 34456788899999999999999999999


Q ss_pred             HHHHHHHHhcc------cchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHH-HHhhcccc
Q 016986          128 MIIGASISATT------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMG-SLLIGIPV  200 (379)
Q Consensus       128 ~~~~~~~~~~~------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l  200 (379)
                      +++++++++++      ++++.+++.|++.|+|.+...+.....+.+|+| ++||++.|+...+.++|.++ +++..+.+
T Consensus       101 ~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~  179 (591)
T PTZ00207        101 FCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF  179 (591)
T ss_pred             HHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999987      689999999999999999999999999999997 77999999999999999865 55555554


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHH-HhhcC
Q 016986          201 KEIAGWWRICFWVSIVPAAILCLA-MVFCA  229 (379)
Q Consensus       201 ~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~  229 (379)
                      .  .+ |+..|++.++..++..++ ..+++
T Consensus       180 ~--~~-~~~~fl~l~vl~~vv~ll~~~~vr  206 (591)
T PTZ00207        180 S--DN-TSAYFFFLMSFALVVGILAIVFMR  206 (591)
T ss_pred             H--Hh-HHHHHHHHHHHHHHHHHHHHhhee
Confidence            3  24 788777766665554443 33433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.88  E-value=6e-20  Score=153.43  Aligned_cols=284  Identities=15%  Similarity=0.147  Sum_probs=226.1

Q ss_pred             HHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHH
Q 016986           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (379)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~  129 (379)
                      +..+..+.+..+.-.-..+.++|.++++++|+|++.+..  |+++++..++..+.+++..++..|+|.++.+..++++.+
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~a--GlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~   88 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVA--GLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIA   88 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHH
Confidence            333333444444445566788999999999999998888  999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHH
Q 016986          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (379)
Q Consensus       130 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~  209 (379)
                      ++.++-... +...++.+-.+.|.|.+......+..+.+.||+ +-+..+++|....++|..+++.+...+.++.++||.
T Consensus        89 ~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~  166 (395)
T COG2807          89 AGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRG  166 (395)
T ss_pred             HHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHH
Confidence            999998887 778888999999999999999999999999985 579999999999999999999999999888855999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhH
Q 016986          210 CFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRV  289 (379)
Q Consensus       210 ~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (379)
                      ...+-+.++++.++.++-  ...     +++.                           .....+..+...++|+|.-|.
T Consensus       167 aL~~WAl~allAl~~WlP--q~~-----r~~~---------------------------~~~~~~~~~~~~vw~~~~aW~  212 (395)
T COG2807         167 ALGFWALLALLALLIWLP--QAL-----REQA---------------------------ASIATKLVSVRKVWRSPLAWQ  212 (395)
T ss_pred             HHHHHHHHHHHHHHHHhh--hcc-----cccc---------------------------cccccccccccccccCchhHH
Confidence            998888888877766542  211     1100                           011122233456889999999


Q ss_pred             HHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHH
Q 016986          290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLG-RKALLQWSFFSMVICSSIS  368 (379)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~i~~~~~  368 (379)
                      +.+...+..+.+++...|+|.++.+ .+.+..++|.+.....+..++..+....+.+|.. +|+........+.++.+.+
T Consensus       213 vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~  291 (395)
T COG2807         213 VTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGL  291 (395)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            8888888888888888877776654 3555666788899999999999999999999764 5666666666666666665


Q ss_pred             HHHH
Q 016986          369 LILE  372 (379)
Q Consensus       369 ~~~~  372 (379)
                      .+.+
T Consensus       292 ~~~P  295 (395)
T COG2807         292 LLAP  295 (395)
T ss_pred             HHhh
Confidence            5443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.86  E-value=1.8e-19  Score=162.24  Aligned_cols=273  Identities=12%  Similarity=0.003  Sum_probs=190.9

Q ss_pred             HHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHH--HHHHHHHHHHHHHhHHh-hhccchhHHHHHHHhHHH-
Q 016986           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLV--VSMCLGGAFIGSTLSGW-IADGVGRRRAFQLCALPM-  128 (379)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~s~~~~~~~i~~~~~g~-l~d~~Grr~~l~~~~~~~-  128 (379)
                      ...+...++..+...+...+.+|.+.+|.|.+.++.  |++  .+...+...+.+|+++. ..||+||||..++++.+. 
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~i--Gl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTAL--AFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence            445566678888888888999999999999988877  886  46667888888888854 799999999876655332 


Q ss_pred             HHHHHHHh---cccc-hHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccc
Q 016986          129 IIGASISA---TTRN-LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (379)
Q Consensus       129 ~~~~~~~~---~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  204 (379)
                      .......+   ...+ ..+++..-++.++..+...+...++..|..++++++...+....+..+|.++++...+.+.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~  160 (390)
T TIGR02718        81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF  160 (390)
T ss_pred             HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22222222   2222 3344445555666777777788888889998888898888888888999999998888888888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcc
Q 016986          205 GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYG  284 (379)
Q Consensus       205 ~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (379)
                      + ||..|++.++..++..+..++.+|+++.   +++.++                             .+..+.++.+|+
T Consensus       161 g-w~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~~-----------------------------~~~~~~~~~l~~  207 (390)
T TIGR02718       161 G-QRPAFLLVACVPLASLVCVLWLKDRAVA---SPEAPL-----------------------------ARRASLFRFFRR  207 (390)
T ss_pred             C-HHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccch-----------------------------hhHHHHHHHHcC
Confidence            8 9999999887776665555555443210   000000                             011245678888


Q ss_pred             cchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHH-HHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Q 016986          285 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVG-IANLLGSVVAMVLMDKLGRKALLQWSFFSM  361 (379)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~  361 (379)
                      |..+......++..........+.+.|+.+ .+.+..+.|......+ +..+++.++.|++.||+|+|+.+..+..+.
T Consensus       208 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~  284 (390)
T TIGR02718       208 PLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLA  284 (390)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            888777766666666555556666666654 3444444566655555 456678899999999999999888766555

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.86  E-value=1.2e-20  Score=172.61  Aligned_cols=266  Identities=17%  Similarity=0.159  Sum_probs=187.0

Q ss_pred             hhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhcc----chh-HHHHHHHhHHHHHHHHHHhcccc------h
Q 016986           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGR-RRAFQLCALPMIIGASISATTRN------L  141 (379)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~----~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~  141 (379)
                      ..+.+.+++|++....  |++.++..+..++..|+.|+++||    +|| |+.++.+....+++.+++...++      .
T Consensus        22 l~~~~~~~~g~s~~~~--g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (437)
T TIGR00792        22 LLFFYTDVLGLSAAFV--GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL   99 (437)
T ss_pred             HHHHHHHccCCCHHHH--HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence            4556677899987776  999999999999999999999997    687 45677788888888887776654      3


Q ss_pred             HHHHHHHHHHHhhhchhhHHHHHHHHhhc-CCCcchhHHHHHHHHHHHHHHHHHhhccccc-------ccchhhHHHHHH
Q 016986          142 IGMLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-------EIAGWWRICFWV  213 (379)
Q Consensus       142 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-------~~~~~wr~~f~~  213 (379)
                      ..+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.+.+.       +..+ ||+.+.+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g-~~~~~~i  178 (437)
T TIGR00792       100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG-WFMFALV  178 (437)
T ss_pred             HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc-HHHHHHH
Confidence            55667788888888887777788888987 4689999999988888888766655544333       2335 9999988


Q ss_pred             HHHHHHHHHHHH-hhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHH
Q 016986          214 SIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (379)
Q Consensus       214 ~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (379)
                      .+++.++..+.. ++.+|+++     +.+++                        ++.+.+....+++++++|.++...+
T Consensus       179 ~~~l~~~~~~~~~~~~~e~~~-----~~~~~------------------------~~~~~~~~~~~~~l~~~~~~~~~~~  229 (437)
T TIGR00792       179 LALIGVVSLIICFFGTKERYS-----EIPKN------------------------IEKKLSLKQIFKALFKNDQLLILCL  229 (437)
T ss_pred             HHHHHHHHHHHHHcCCEecCC-----CCCcc------------------------cccCCCHHHHHHHHhCCHHHHHHHH
Confidence            777766655443 44666531     00000                        0001111234667888898887776


Q ss_pred             HHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHH
Q 016986          293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLIL  371 (379)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~  371 (379)
                      ..++............++|.+...+ .....+.......++.+++.++.++++||+|+|+.+..+..+..++.+++.+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~  307 (437)
T TIGR00792       230 AYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA  307 (437)
T ss_pred             HHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence            6666555544443444455443333 22234556666788999999999999999999999988888777776665543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.83  E-value=2.7e-18  Score=158.38  Aligned_cols=165  Identities=16%  Similarity=0.159  Sum_probs=129.6

Q ss_pred             HHHHHHHHHhhhhccccchh-hhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhcc-chhHHHHHHHhHHHHHHH
Q 016986           55 VATLSSFLFGYHLGVVNEPL-ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGA  132 (379)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~~~~~~  132 (379)
                      .++...+...+......+.+ ..+.+++|++..+.  +++.+.+........+++|+++|| +|||++++.+.++.+++.
T Consensus        25 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a--~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~  102 (500)
T PRK09584         25 LIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADS--ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY  102 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            34444444444443333444 44568899987766  677777766656667889999999 599999999999999999


Q ss_pred             HHHhccc-chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCc--chhHHHHHHHHHHHHHHHHHhhcccccccchhhHH
Q 016986          133 SISATTR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (379)
Q Consensus       133 ~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~  209 (379)
                      +++++++ +.+.+.++|+++|++.|...+...+++.|++|+++  |..+.++++.+.++|..++|.+++++.+..| ||+
T Consensus       103 ~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g-~~~  181 (500)
T PRK09584        103 ALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG-WSV  181 (500)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC-HHH
Confidence            9998874 56667788999999999998888899999998643  4567889999999999999999999998888 999


Q ss_pred             HHHHHHHHHHHHH
Q 016986          210 CFWVSIVPAAILC  222 (379)
Q Consensus       210 ~f~~~~~~~~~~~  222 (379)
                      .|++.++..++.+
T Consensus       182 ~F~i~~i~~~i~~  194 (500)
T PRK09584        182 AFALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHHHHHH
Confidence            9998775544433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.81  E-value=2.5e-17  Score=141.66  Aligned_cols=291  Identities=15%  Similarity=0.087  Sum_probs=206.8

Q ss_pred             CccchhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHH
Q 016986           44 PSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL  123 (379)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~  123 (379)
                      +..+++|.++++..+-++.+++....+++.......-++ +.+..  -|+.-+|++.+....+++-|+.|++|-|..+++
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~--~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll  114 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAA--DWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL  114 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHH--HHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence            345677999999999999998888888888888888888 43444  699999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhccc------chH--HHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHh
Q 016986          124 CALPMIIGASISATTR------NLI--GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLL  195 (379)
Q Consensus       124 ~~~~~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  195 (379)
                      +....+++..+-..+.      .++  ....+..+.+.+.-........+-.-||+++||+.+..+-.++..+|.+++.+
T Consensus       115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l  194 (480)
T KOG2563|consen  115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL  194 (480)
T ss_pred             HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence            9999999999866652      344  56678888888777777666677888999999999999999999999999999


Q ss_pred             hcccccccc----h-hhHH--HHHHHHHHHHHHHHHH-hhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhh
Q 016986          196 IGIPVKEIA----G-WWRI--CFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKL  267 (379)
Q Consensus       196 ~~~~l~~~~----~-~wr~--~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (379)
                      +...+..+.    + .|--  .|+.....+.+.+++. +..++.|+.   ++......                      
T Consensus       195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t---Pps~s~~~----------------------  249 (480)
T KOG2563|consen  195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT---PPSASQAA----------------------  249 (480)
T ss_pred             ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---CCchhHhh----------------------
Confidence            998887665    1 2544  2443333333333332 334444321   11111100                      


Q ss_pred             hcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 016986          268 DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDK  347 (379)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  347 (379)
                       ..+.+...+.++.++|+.+....++..+....+++..+.+..-+ ...++.+..+|.......+++++++.++|.+.||
T Consensus       250 -~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dk  327 (480)
T KOG2563|consen  250 -LQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADK  327 (480)
T ss_pred             -hhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhh
Confidence             01222456788899999998877666555544433333222111 1123445678999999999999999999999999


Q ss_pred             hCc-hHHHHHHHHHHHHH
Q 016986          348 LGR-KALLQWSFFSMVIC  364 (379)
Q Consensus       348 ~g~-~~~~~~~~~~~~i~  364 (379)
                      .+. |.+..+.+....++
T Consensus       328 tk~fk~~~~v~~~~~~v~  345 (480)
T KOG2563|consen  328 TKKFKLTTLVLYLFALVG  345 (480)
T ss_pred             hhhHHHHHHHHHHHHHHH
Confidence            876 44455555554444

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.80  E-value=1.6e-17  Score=149.65  Aligned_cols=295  Identities=15%  Similarity=0.153  Sum_probs=188.4

Q ss_pred             HHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhc----cchhHHHHHHH-hHHHH
Q 016986           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGRRRAFQLC-ALPMI  129 (379)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d----~~Grr~~l~~~-~~~~~  129 (379)
                      .++...+-..+......+.++.+.+++|.+....  +++..+..+...+.+|+.|.++|    |+|||+.++.+ .+...
T Consensus         8 ~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~--~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~   85 (477)
T TIGR01301         8 RVASVAAGVQFGWALQLSLLTPYVQELGIPHAWA--SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVA   85 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHH
Confidence            3334444445555666677777888999976665  89999999999999999999999    59999998874 66666


Q ss_pred             HHHHHHhcccchH-----------------HHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcc--hhHHHHHHHHHHHHH
Q 016986          130 IGASISATTRNLI-----------------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVR--GTYGAFIQIATCLGL  190 (379)
Q Consensus       130 ~~~~~~~~~~~~~-----------------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~  190 (379)
                      ++.++.+++++..                 .++++-.+..++.....+...++++|.+|+++|  +.+.++.+...++|.
T Consensus        86 ~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~  165 (477)
T TIGR01301        86 FAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGN  165 (477)
T ss_pred             HHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHH
Confidence            7777777776643                 222333344457777888889999999998765  579999999999999


Q ss_pred             HHHHhhccccc--ccc------------hhhHHHHHHHHHHHHHHHHHH-hhcCCChhHHHHcCChHHHHHHHHHHhCCC
Q 016986          191 MGSLLIGIPVK--EIA------------GWWRICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGS  255 (379)
Q Consensus       191 ~~~~~~~~~l~--~~~------------~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~  255 (379)
                      ++|+.+++...  +..            .+.|+.|++.++..++..+.. +..+|.|.... ++..++   +.+      
T Consensus       166 ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~-~~~~~~---~~~------  235 (477)
T TIGR01301       166 VLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGS-DDFINS---EAA------  235 (477)
T ss_pred             HHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcc-ccchhh---hcc------
Confidence            99999987641  111            126889999877766665554 55788652110 000000   000      


Q ss_pred             chhHHHHHHHhhhcCCCCCcchhhhhhc-----ccchhHHHHHHHHHHHHHhhchhHHHHhHH-HHHHHcCC-----Ch-
Q 016986          256 HVKSSLAELSKLDRGDDGDIVKFEELLY-----GRHFRVVFIGSTLFALQQLSGINAIFYFSS-SVFKSAGL-----SS-  323 (379)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~-  323 (379)
                                  +..+......++++++     .+..+.+++..++..+..+....+.+.|.. ++++..+.     +. 
T Consensus       236 ------------~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~g  303 (477)
T TIGR01301       236 ------------PPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDG  303 (477)
T ss_pred             ------------cccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHH
Confidence                        0000000111222222     235666666666666665555554444443 34432111     11 


Q ss_pred             ---h-HHHHHHHHHHHHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHHHHHHHHHH
Q 016986          324 ---G-LANVFVGIANLLGSVVAMVLMDKLGR-KALLQWSFFSMVICSSISLILEA  373 (379)
Q Consensus       324 ---~-~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~i~~~~~~~~~~  373 (379)
                         | +......+...+.+++..++.+|+|+ |+...++.++.+++++...+..+
T Consensus       304 vr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~  358 (477)
T TIGR01301       304 VRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTY  358 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence               2 34455556666777788889999985 66667887788887777766553

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.78  E-value=5.9e-18  Score=156.60  Aligned_cols=181  Identities=15%  Similarity=0.074  Sum_probs=135.8

Q ss_pred             ccchhhhhh-hhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHH---HHhcccchHHHH
Q 016986           70 VNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS---ISATTRNLIGML  145 (379)
Q Consensus        70 ~~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~---~~~~~~~~~~l~  145 (379)
                      ....+|.+. +++|.+..+.  ++..+...++..++.++.|+++||+|||+++..+.++..++.+   ....+++...++
T Consensus       269 ~~~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (490)
T PRK10642        269 LLTYMPSYLSHNLHYSEDHG--VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIF  346 (490)
T ss_pred             HHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            344566654 5678776554  6777888899999999999999999999998887765443332   223345677788


Q ss_pred             HHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHH
Q 016986          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (379)
Q Consensus       146 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~  225 (379)
                      +++++.|++.+........++.|.+|++.|++++++......++..++|.+.+++.+..++|+.++++..+.+++.++..
T Consensus       347 ~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~  426 (490)
T PRK10642        347 AGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG  426 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence            89999998877777778888999999999999999744434555677888888777654447877776666666666667


Q ss_pred             hhcCCChhHHHHc-----CChHHHHHHHHHHh
Q 016986          226 VFCAESPHWLYKK-----GRTAEAEAEFEKLL  252 (379)
Q Consensus       226 ~~~~e~p~~~~~~-----~~~~~~~~~~~~~~  252 (379)
                      +++||+|++..++     ++.+|+.+.+.++.
T Consensus       427 ~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~  458 (490)
T PRK10642        427 VTMKETANRPLKGATPAASDIQEAKEILVEHY  458 (490)
T ss_pred             HHhccccCCCCCCccccccchhhHHHHhhccc
Confidence            7789999987654     77788888877765

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.78  E-value=6.3e-18  Score=153.92  Aligned_cols=268  Identities=16%  Similarity=0.180  Sum_probs=203.2

Q ss_pred             chhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhc----cchhHHHHH-HHhHHHHHHHHHHhcc-c------
Q 016986           72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGRRRAFQ-LCALPMIIGASISATT-R------  139 (379)
Q Consensus        72 ~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d----~~Grr~~l~-~~~~~~~~~~~~~~~~-~------  139 (379)
                      ...+.+.+.+|++....  |++..+..+..++..|+.|.++|    |+|||+..+ +|.+..+++.++.... +      
T Consensus        23 ~~~~f~~~~~gl~~~~~--g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~  100 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALA--GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFT  100 (428)
T ss_pred             HHHHHHHHHcCCCHHHH--HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhh
Confidence            34556677779887666  89999999999999999999999    899765555 5778888877776655 4      


Q ss_pred             -chHHHHHHHHHHHhhhchhhHHHHHHHHhhcC-CCcchhHHHHHHHHHHHHHHHHHhhcccccccch------hhHHHH
Q 016986          140 -NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG------WWRICF  211 (379)
Q Consensus       140 -~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~------~wr~~f  211 (379)
                       ....+.+..++..++.........++..|..+ +++|.+..+.-..+..+|.++...+.+.+.+..+      +|++..
T Consensus       101 ~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~  180 (428)
T PF13347_consen  101 AKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMA  180 (428)
T ss_pred             hHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHH
Confidence             23345667777788888888888999999997 5799999999999888888766666665553322      388888


Q ss_pred             HHHHHHHHHHHHHH-hhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHH
Q 016986          212 WVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV  290 (379)
Q Consensus       212 ~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (379)
                      .+.+++.++..+.. +..+|++      ++.++                        ++++.+....++++++||.++..
T Consensus       181 ~v~~iv~~v~~~i~~~~~ke~~------~~~~~------------------------~~~~~~~~~~~~~~~~nr~~~~l  230 (428)
T PF13347_consen  181 LVLAIVGLVFFLITFFFVKERS------VEVTE------------------------QEKKISLRDSLRSLFRNRPFRIL  230 (428)
T ss_pred             HHHHHHHHHHhhhhhheeeecc------ccccc------------------------cccccccccchhhhcccchHHHH
Confidence            88777766655544 4456621      00000                        11222334567889999999998


Q ss_pred             HHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Q 016986          291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLI  370 (379)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~  370 (379)
                      ....++............++|.....+..+ ..+.......++.+++.++.++++||+|+|+....+..+..++.+++.+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~  309 (428)
T PF13347_consen  231 LLAFFLQWLAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFF  309 (428)
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHH
Confidence            888888877777777778888888777663 3456667788899999999999999999999999999999999988888


Q ss_pred             HH
Q 016986          371 LE  372 (379)
Q Consensus       371 ~~  372 (379)
                      .+
T Consensus       310 ~~  311 (428)
T PF13347_consen  310 LG  311 (428)
T ss_pred             HH
Confidence            76

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.78  E-value=2.9e-16  Score=142.14  Aligned_cols=167  Identities=19%  Similarity=0.169  Sum_probs=126.9

Q ss_pred             HHHHHHHHhhhhccccchhhh-hhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccc-hhHHHHHHHhHHHHHHHH
Q 016986           56 ATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGAS  133 (379)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~-Grr~~l~~~~~~~~~~~~  133 (379)
                      ++...+...+........+|. +.+++|++..+.  +.+.+.+.....++++++|+++||+ |||++++++.++..++.+
T Consensus        14 l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a--~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~l   91 (493)
T PRK15462         14 VVALQIWEYFSFYGMRALLILYLTNQLKYDDNHA--YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHV   91 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHH
Confidence            333333444443333444554 456788887776  8889999999999999999999999 999999999999999987


Q ss_pred             HHhccc-chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCC--cchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Q 016986          134 ISATTR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF--VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC  210 (379)
Q Consensus       134 ~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~  210 (379)
                      +.+..+ +...+.++..+.++|.|...+...++++|.+|++  +|..+.++.+.+.++|..++|.+.+++.+..| |++.
T Consensus        92 ll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-w~~~  170 (493)
T PRK15462         92 VLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-WAMG  170 (493)
T ss_pred             HHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-hHHH
Confidence            776543 2233444444555667777777788999999875  79999999999999999999999999988888 9999


Q ss_pred             HHHHHHHHHHHHHHH
Q 016986          211 FWVSIVPAAILCLAM  225 (379)
Q Consensus       211 f~~~~~~~~~~~~~~  225 (379)
                      |.++++..++.++.+
T Consensus       171 F~iaaigm~l~li~~  185 (493)
T PRK15462        171 FGLAAVGMIAGLVIF  185 (493)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            998766544444433

>TIGR00788 fbt folate/biopterin transporter

Probab=99.77  E-value=3.7e-17  Score=149.66  Aligned_cols=298  Identities=14%  Similarity=0.074  Sum_probs=193.5

Q ss_pred             HHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccch-----hHHHHHHHhH
Q 016986           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-----RRRAFQLCAL  126 (379)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~G-----rr~~l~~~~~  126 (379)
                      ...++...++..+..........+.+.+++|++..+.  +...+...+...+-.+ +|+++||++     ||+.++++.+
T Consensus        27 ~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i--~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~  103 (468)
T TIGR00788        27 VLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARY--QRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGL  103 (468)
T ss_pred             HHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHH
Confidence            3344444556666663344556677788899998877  7888999999888666 999999998     7888888877


Q ss_pred             HHH-HHHHHHhcccchHHHHH-HHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHH---HHHHHHHHHHHHhhccccc
Q 016986          127 PMI-IGASISATTRNLIGMLL-GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFI---QIATCLGLMGSLLIGIPVK  201 (379)
Q Consensus       127 ~~~-~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~---~~~~~~g~~~~~~~~~~l~  201 (379)
                      +.+ +.....+..++.....+ ..++.+++.+...++.-++..|..+ +++....+..   .....+|.++++.+++.+.
T Consensus       104 l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~  182 (468)
T TIGR00788       104 LGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL  182 (468)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            763 44444444455444444 7899999999999999999999998 5555443333   3344589999999999998


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhh
Q 016986          202 EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEEL  281 (379)
Q Consensus       202 ~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (379)
                      +..+ ||..|++.+...++..+..++++|++...  +++.++........    ......+       .......+.++.
T Consensus       183 ~~~~-~~~~f~~~a~l~ll~~~~~~~~~E~~~~~--~~~~~~~~~~~~~~----~~~~~~~-------~~~~~~~~l~~~  248 (468)
T TIGR00788       183 DKTL-TRILFLITAALLLLQLFVSNLSKERRAFV--RPRIGTYLEMNMAL----LTLGVLA-------NVKVQILGLRGA  248 (468)
T ss_pred             HhcC-cchHHHHHHHHHHHHHHHHHhcccccccc--cccccccchhhhhh----hhhhHHH-------HHHHHHHHHHHH
Confidence            8888 99999997777766655567778763100  01100000000000    0000000       000001234445


Q ss_pred             hcccchhHHHHHHHH-HHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHH
Q 016986          282 LYGRHFRVVFIGSTL-FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS  360 (379)
Q Consensus       282 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~  360 (379)
                      +++|..+...+..++ +... ........++.+...+.++...|......+++.+++....+++.+|++.|+.+.++.++
T Consensus       249 l~~~~i~~~l~fifl~~~~~-~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l  327 (468)
T TIGR00788       249 IQLLEIAKPLIFIFLSYANL-PGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLL  327 (468)
T ss_pred             HhcHHHHHHHHHHHHHHhhc-CCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence            677777665544444 2211 11111111233445667777788888899999999999999999999999999988888


Q ss_pred             HHHHHHHH
Q 016986          361 MVICSSIS  368 (379)
Q Consensus       361 ~~i~~~~~  368 (379)
                      ..++.+..
T Consensus       328 ~~~~~~~~  335 (468)
T TIGR00788       328 YTLSSLFD  335 (468)
T ss_pred             HHHHHhCc
Confidence            88766543

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09669 putative symporter YagG; Provisional

Probab=99.75  E-value=7.2e-17  Score=147.70  Aligned_cols=259  Identities=16%  Similarity=0.179  Sum_probs=168.4

Q ss_pred             chhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhcc----chh-HHHHHHHhHHHHHHHHHHhcccc------
Q 016986           72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGR-RRAFQLCALPMIIGASISATTRN------  140 (379)
Q Consensus        72 ~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~----~Gr-r~~l~~~~~~~~~~~~~~~~~~~------  140 (379)
                      .....+.+++|++....  |++.++..+..++..|+.|.++||    +|| |+.++.+.+..++..++....++      
T Consensus        31 ~l~~~~t~~~gls~~~~--g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~  108 (444)
T PRK09669         31 FLAYFYTDVFGLSAAIM--GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGK  108 (444)
T ss_pred             HHHHHHHHhcCCCHHHH--HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchH
Confidence            34556778899987776  999999999999999999999998    787 45566677777777665544443      


Q ss_pred             hHHHHHHHHHHHhhhchhhHHHHHHHHhhc-CCCcchhHHHHHHHHHHHHHHHHHhhcccccc-------cchhhHHHHH
Q 016986          141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-------IAGWWRICFW  212 (379)
Q Consensus       141 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~~wr~~f~  212 (379)
                      ...+++..++.+.+.+.......++.+|+. ++++|.+..++...+..+|..+++.+...+..       ..+ |+..+.
T Consensus       109 ~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g-~~~~~~  187 (444)
T PRK09669        109 IIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKG-YFYAMM  187 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh-HHHHHH
Confidence            455566666777666666667778999998 45889998888888878877766654333221       223 887777


Q ss_pred             HHHHHHHHHHHHH-hhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHH
Q 016986          213 VSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF  291 (379)
Q Consensus       213 ~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (379)
                      +.+++.++..+.. +..+|.++     ++ ++                          ++.+...+.+++++||.++..+
T Consensus       188 i~~ii~~v~~~~~~~~~~e~~~-----~~-~~--------------------------~~~~~~~~~~~~~~n~~~~~l~  235 (444)
T PRK09669        188 VMGLLGVVLFFCCFFMTKERYT-----PE-VD--------------------------NSSSVWKDLKLLLGNSQWRIMF  235 (444)
T ss_pred             HHHHHHHHHHHHHhCCeEEecC-----CC-Cc--------------------------CCCCHHHHHHHHhCCchHHHHH
Confidence            7666655544433 33444311     00 00                          0111234567788999988877


Q ss_pred             HHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHH
Q 016986          292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSS  366 (379)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~  366 (379)
                      ...++.............+|.....+. +...+.......+..+++.++.++++||+|+|+....+.+...++..
T Consensus       236 ~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~  309 (444)
T PRK09669        236 IFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSA  309 (444)
T ss_pred             HHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            666555444433333334444433322 11123444455677788889999999999999988877765554333

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.74  E-value=5.4e-18  Score=136.59  Aligned_cols=285  Identities=17%  Similarity=0.108  Sum_probs=199.7

Q ss_pred             hhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhcc-chhHHHHHHHhH
Q 016986           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCAL  126 (379)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~  126 (379)
                      ++...+...++..|-+++.....+....+...|.+++..+.  .++.++|.....+.+++.|++.|| +|-|..-++-+.
T Consensus        41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akf--tLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~  118 (459)
T KOG4686|consen   41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKF--TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCI  118 (459)
T ss_pred             hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeee--eeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHH
Confidence            44555555566666667777777778888888888877676  799999999999999999999996 788887777777


Q ss_pred             HHHHHHHHHh---cccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccccc
Q 016986          127 PMIIGASISA---TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (379)
Q Consensus       127 ~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  203 (379)
                      ...++.++++   .++.+|.+.++|++.|+|.-....+...|..-|+..|+.+.++|+......+|..+.-.+.+++.+.
T Consensus       119 fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~  198 (459)
T KOG4686|consen  119 FVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDT  198 (459)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence            7777777654   5689999999999999998888888999999999999999999999999999988877777777654


Q ss_pred             chh-h----HHHH---HHHH----HHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCC
Q 016986          204 AGW-W----RICF---WVSI----VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGD  271 (379)
Q Consensus       204 ~~~-w----r~~f---~~~~----~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (379)
                      .+. .    +...   +...    ...++++...-+.         +++.|+   .+++                 ++..
T Consensus       199 ~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~---------D~rAer---ilh~-----------------e~g~  249 (459)
T KOG4686|consen  199 MGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLS---------DDRAER---ILHL-----------------EEGF  249 (459)
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hhHHHH---HHhh-----------------hcCc
Confidence            431 0    0000   0000    0011111110000         011111   1000                 1111


Q ss_pred             CCCcchhhhhh-cccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 016986          272 DGDIVKFEELL-YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGR  350 (379)
Q Consensus       272 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~  350 (379)
                      ..+..+..+.. -.+.+|.+.+.++++....+-.+..-+.++++.++.++.+++.+.........+..++.|.++||+|+
T Consensus       250 ~Ge~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~  329 (459)
T KOG4686|consen  250 LGEEPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGF  329 (459)
T ss_pred             ccCCcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcc
Confidence            11111111111 13778888888888888888888888888999999998888877777777888899999999999999


Q ss_pred             hHHHHHHHHHHHH
Q 016986          351 KALLQWSFFSMVI  363 (379)
Q Consensus       351 ~~~~~~~~~~~~i  363 (379)
                      +.+.+.+..+..+
T Consensus       330 n~~wv~~a~~~tl  342 (459)
T KOG4686|consen  330 NLWWVASACILTL  342 (459)
T ss_pred             eehhHHHHHHHHH
Confidence            8665554444333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.74  E-value=1.3e-15  Score=135.75  Aligned_cols=281  Identities=15%  Similarity=0.164  Sum_probs=195.8

Q ss_pred             HHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccch-hHHHHHHHhHHHHHHHHHHh
Q 016986           58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-RRRAFQLCALPMIIGASISA  136 (379)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~G-rr~~l~~~~~~~~~~~~~~~  136 (379)
                      ..+++.....+...|.++.+-++.|++..++  |.+.++..+...++++++|.++||++ +|+++.++.++.++..+...
T Consensus         9 ~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qI--G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~   86 (400)
T PF03825_consen    9 LMYFLYFFAYGAFLPYLPLYLESRGFSGTQI--GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3345555566667788899999999988877  99999999999999999999999986 57788788787777777778


Q ss_pred             cccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhh-cccccccch--hhHHHHHH
Q 016986          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI-GIPVKEIAG--WWRICFWV  213 (379)
Q Consensus       137 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~-~~~l~~~~~--~wr~~f~~  213 (379)
                      ..++++.+++.-++..+...+..|...++..+...+  +++-.|-.-...++|.+++... +..+....+  ...+.+++
T Consensus        87 ~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i  164 (400)
T PF03825_consen   87 FSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYI  164 (400)
T ss_pred             HhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHH
Confidence            889999888888888888888888888888887752  3333444444445555444322 111221111  12345566


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHH
Q 016986          214 SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG  293 (379)
Q Consensus       214 ~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (379)
                      .+...++.....+.+|+.|+    +++.++                         +.++....+..+++|+|++...++.
T Consensus       165 ~~~~~~ll~~~~l~lp~~~~----~~~~~~-------------------------~~~~~~~~~~~~llk~~~~~~Fll~  215 (400)
T PF03825_consen  165 AAILSLLLAGFALFLPKTPP----KRSAKE-------------------------SVKKLLGLDALKLLKNPRFLVFLLA  215 (400)
T ss_pred             HHHHHHHHHHHHHhCCCCcc----ccccCC-------------------------CcccccchHHHHHhcCccHHHHHHH
Confidence            55555555444566787652    111000                         0111112234578999999888888


Q ss_pred             HHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHH
Q 016986          294 STLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLIL  371 (379)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~  371 (379)
                      .++........+++.+.|+.+.-+......+.......+++++.-...+++..|+|.++++.++.+..++=..++...
T Consensus       216 ~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~  293 (400)
T PF03825_consen  216 AFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF  293 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            777777777767777777665433334445667777888999999999999999999999999988887777666665

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.72  E-value=2.5e-16  Score=145.03  Aligned_cols=280  Identities=11%  Similarity=0.062  Sum_probs=172.6

Q ss_pred             HHHHHHhhhhccccchh-hhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhc----cchh-HHHHHHHhHHHHHH
Q 016986           58 LSSFLFGYHLGVVNEPL-ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGR-RRAFQLCALPMIIG  131 (379)
Q Consensus        58 ~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d----~~Gr-r~~l~~~~~~~~~~  131 (379)
                      ++.+...+..+...+++ ..+.+.+|++....  |.+..+.-+..++..|++|.++|    |+|| |+.++.+.+..+++
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~v--g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~   90 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLV--GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVV   90 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHH
Confidence            34444444444444443 44556679887666  99999999999999999999999    6698 66667788877777


Q ss_pred             HHHHhcccc------hHHHHHHHHHHHhhhchhhHHHHHHHHhhc-CCCcchhHHHHHHHHHHHHHHHHHhhcccc----
Q 016986          132 ASISATTRN------LIGMLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPV----  200 (379)
Q Consensus       132 ~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l----  200 (379)
                      .++.-..++      +..+++..++.+++.+.......++..|.. ++++|.+..++-..+.++|..+.+.+...+    
T Consensus        91 ~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~  170 (473)
T PRK10429         91 LFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYV  170 (473)
T ss_pred             HHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            665544332      334555666777888888888889999999 589999998886666666644444333221    


Q ss_pred             c---ccchhhHHHHHHHHHHHHHHHHH-HhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcc
Q 016986          201 K---EIAGWWRICFWVSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIV  276 (379)
Q Consensus       201 ~---~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (379)
                      .   +..+ |+....+.++..++..+. ++..+|.++.    +..++ .                      ++++.+...
T Consensus       171 g~~~~~~g-~~~~~~i~~~~~~~~~~~~~~~~~e~~~~----~~~~~-~----------------------~~~~~~~~~  222 (473)
T PRK10429        171 GGGDRGFG-FQMFTLVLIAFFIVSTIITLRNVHEVYSS----DNQVS-A----------------------EGSHLTLKD  222 (473)
T ss_pred             CCCchhhh-HHHHHHHHHHHHHHHHHHHHcCceecCCc----ccccc-c----------------------cccCCCHHH
Confidence            1   1123 676666655555444333 3335554210    00000 0                      001111223


Q ss_pred             hhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHH
Q 016986          277 KFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW  356 (379)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~  356 (379)
                      .++.+++||.++..+...++............++|.....+. ....+.......++.+++.++.+++.||+|+|+.+.+
T Consensus       223 ~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~  301 (473)
T PRK10429        223 IVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGD-ADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAG  301 (473)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            445567888887777666665554444334444444333221 1123345556668888999999999999999999887


Q ss_pred             HHHHHHHHHHHH
Q 016986          357 SFFSMVICSSIS  368 (379)
Q Consensus       357 ~~~~~~i~~~~~  368 (379)
                      +..+..++.+.+
T Consensus       302 ~~~~~~~~~~~~  313 (473)
T PRK10429        302 ASIFPVLSCGVL  313 (473)
T ss_pred             HHHHHHHHHHHH
Confidence            776655544443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.71  E-value=7.7e-16  Score=145.99  Aligned_cols=138  Identities=14%  Similarity=0.023  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcC
Q 016986           92 LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP  171 (379)
Q Consensus        92 ~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~  171 (379)
                      +...+..++..++.++.|+++||+|||+++++++++.++++++.+++++...+++.+++.|++.+...+...++++|++|
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P  678 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP  678 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            44556668889999999999999999999999999999999999999988888888999999888889999999999999


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 016986          172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES  231 (379)
Q Consensus       172 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~  231 (379)
                      .++|++++|+.+....+|.+++|.+++.+....  ...+|++.++..++..++.+++||+
T Consensus       679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~--~~~pf~i~a~~lll~~ll~~~LPET  736 (742)
T TIGR01299       679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGIT--KAAPILFASAALACGGLLALKLPDT  736 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999998877643  4677877777777766666778987

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.71  E-value=7.5e-16  Score=133.37  Aligned_cols=204  Identities=16%  Similarity=0.146  Sum_probs=149.8

Q ss_pred             hcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccc-----------
Q 016986          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA-----------  204 (379)
Q Consensus       136 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----------  204 (379)
                      +..++++.++++-++.|.|.+...+....++++..+++++++.+++.+..+++|..++|++++.+....           
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            355789999999999999999999999999999999999999999999999999999999999776321           


Q ss_pred             ----hhhHHHHHHHHHHHHHHHHHHhh--cCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchh
Q 016986          205 ----GWWRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKF  278 (379)
Q Consensus       205 ----~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (379)
                          .+|+++|++.+...++..+.+.+  +||.+      ++.++  +.                    . .+  +..+.
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~------~~~~~--~~--------------------~-~~--~~~~~  133 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQ------EADVA--RV--------------------S-SG--DTTQK  133 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC------ccccc--cc--------------------c-cc--cccch
Confidence                24999999655554444444433  34431      11000  00                    0 00  00112


Q ss_pred             hhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHH--HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHH
Q 016986          279 EELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSV--FKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW  356 (379)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~  356 (379)
                      ++.+++|.++...+..+++.....+...+.+.|+.+.  ++.+..+.+........+.++|+++++++.||+++|+.+.+
T Consensus       134 ~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~  213 (310)
T TIGR01272       134 TSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAF  213 (310)
T ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            3456677777777777777777777788888888643  34555566788889999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHH
Q 016986          357 SFFSMVICSSISLI  370 (379)
Q Consensus       357 ~~~~~~i~~~~~~~  370 (379)
                      +..+..++.++...
T Consensus       214 ~~~l~~~~~~l~~~  227 (310)
T TIGR01272       214 NAFLAVLLSIGAAL  227 (310)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777666644443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.70  E-value=1e-18  Score=160.47  Aligned_cols=301  Identities=16%  Similarity=0.181  Sum_probs=3.0

Q ss_pred             HHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHh
Q 016986           57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (379)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~  136 (379)
                      ++..+...+..+.....++.++++|+++.++.  |++.+.+-++..+..++..++.+|..|-+.+-.|.+++++++++++
T Consensus         9 ~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~--G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~   86 (539)
T PF03137_consen    9 CLLGLFQMMVSGYVNSSLTTIERRFGLSSSQS--GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA   86 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh
Confidence            33344445666677888999999999998888  9999999999999999999999998888888899999999988876


Q ss_pred             cc------------c--------------------------------------chHHHHHHHHHHHhhhchhhHHHHHHH
Q 016986          137 TT------------R--------------------------------------NLIGMLLGRFVVGTGMGLGPTVAALYV  166 (379)
Q Consensus       137 ~~------------~--------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i  166 (379)
                      +=            .                                      -+..+++++++.|+|.++.+++..+|+
T Consensus        87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi  166 (539)
T PF03137_consen   87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI  166 (539)
T ss_dssp             -----------------------------------------------------------------SSS------------
T ss_pred             ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence            40            0                                      035577889999999999999999999


Q ss_pred             HhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccc---------------------hhhHHHHHHHHHHHHHHHHHH
Q 016986          167 TEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA---------------------GWWRICFWVSIVPAAILCLAM  225 (379)
Q Consensus       167 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------------------~~wr~~f~~~~~~~~~~~~~~  225 (379)
                      -|..++++-+..+|+......+|.++|.++++.+.+..                     |.|+..|++.+...++..+.+
T Consensus       167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl  246 (539)
T PF03137_consen  167 DDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL  246 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998776431                     127777777777777777777


Q ss_pred             hhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHH---HhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHh
Q 016986          226 VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAEL---SKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL  302 (379)
Q Consensus       226 ~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (379)
                      +++|++-+...+..+.++.++ . +  ..+.......+.   .......+......+++++||.+....++.........
T Consensus       247 ~~FPk~lp~~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~  322 (539)
T PF03137_consen  247 FFFPKKLPGTSERQEEKESSE-R-K--EEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVS  322 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HcCCccCCCcccccchhhhhh-c-c--hhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            777765321100000000000 0 0  000000000000   00111223445667889999999988888888888888


Q ss_pred             hchhHHHHhHHHHHHHcCCChhHHHH-HHHHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHHH
Q 016986          303 SGINAIFYFSSSVFKSAGLSSGLANV-FVGIANLLGSVVAMVLMDKLG--RKALLQWSFFSMVI  363 (379)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~i  363 (379)
                      ...+..|-|++..++.+...+..+.. ....+.++|.+++|++.+|++  .|..+....+...+
T Consensus       323 G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v  386 (539)
T PF03137_consen  323 GFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIV  386 (539)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHH
Confidence            88888999999888887777665443 334467789999999999974  34444444443333

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.70  E-value=1.8e-16  Score=121.03  Aligned_cols=136  Identities=22%  Similarity=0.384  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCC
Q 016986           94 VSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF  173 (379)
Q Consensus        94 ~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~  173 (379)
                      .+.+.++..++.++.|++.||+|||+.+..+.....++.+.....++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            34556788899999999999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhh-cCC
Q 016986          174 VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF-CAE  230 (379)
Q Consensus       174 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e  230 (379)
                      +|++..++.+....+|..+++.+.+.+.+..+ |++.|++.+...++..+...+ .||
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999988877 999998877776665555443 443

>PRK09848 glucuronide transporter; Provisional

Probab=99.69  E-value=3.3e-15  Score=137.02  Aligned_cols=278  Identities=14%  Similarity=0.142  Sum_probs=166.7

Q ss_pred             HHHHHHhhhhccccc-hhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccc----hhHHHH-HHHhHHHHHH
Q 016986           58 LSSFLFGYHLGVVNE-PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV----GRRRAF-QLCALPMIIG  131 (379)
Q Consensus        58 ~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~----Grr~~l-~~~~~~~~~~  131 (379)
                      ++.+..........+ ..+.+.+.+|++..+.  |++.++..+..++..+++|+++||.    |||+.+ +.+.+...+.
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~   92 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAA--GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIF   92 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHH
Confidence            344344433333333 3346667789877666  9999999999999999999999996    777654 5555544444


Q ss_pred             HHHH-hc----ccc--hHHHHHHHHHHHhhhchhhHHHHHHHHhhcCC-CcchhHHHHHHHH-----HHHHHHHHHhhcc
Q 016986          132 ASIS-AT----TRN--LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP-FVRGTYGAFIQIA-----TCLGLMGSLLIGI  198 (379)
Q Consensus       132 ~~~~-~~----~~~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~~g~~~~~~~~~  198 (379)
                      .++. ..    +++  ....++...+.+++.+...+...++..|..++ ++|.+..++-..+     ..++..++|.+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~  172 (448)
T PRK09848         93 SVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN  172 (448)
T ss_pred             HHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3332 21    122  22334455677887888877777777777754 6788876665543     3345556666655


Q ss_pred             cccccch-hhHHHHHHHHHHHHHHHH-HHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcc
Q 016986          199 PVKEIAG-WWRICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIV  276 (379)
Q Consensus       199 ~l~~~~~-~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (379)
                      ....... .|.....+.++..++..+ .....+|+++     ++.                            ++.....
T Consensus       173 ~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~-----~~~----------------------------~~~~~~~  219 (448)
T PRK09848        173 SSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVV-----RIV----------------------------AQPSLKI  219 (448)
T ss_pred             hCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccC-----CCc----------------------------cCCCHHH
Confidence            3322111 121111122222222222 2223444321     000                            0011123


Q ss_pred             hhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHH
Q 016986          277 KFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW  356 (379)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~  356 (379)
                      .++++++||.+....+..++............++|..+.++......+.......++.+++.++.+++.||+++|+.+.+
T Consensus       220 ~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~  299 (448)
T PRK09848        220 SLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLI  299 (448)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            46778999999888777777766666655566666666555433323344444456778899999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 016986          357 SFFSMVICSSISLI  370 (379)
Q Consensus       357 ~~~~~~i~~~~~~~  370 (379)
                      +.+++.++.+++.+
T Consensus       300 g~~~~~i~~~~~~~  313 (448)
T PRK09848        300 GALLGTCGYLLFFW  313 (448)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88887777766654

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.69  E-value=3.5e-15  Score=132.22  Aligned_cols=185  Identities=21%  Similarity=0.232  Sum_probs=144.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchh-HHHHHHHhH
Q 016986           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRAFQLCAL  126 (379)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Gr-r~~l~~~~~  126 (379)
                      ..|+.+.+..+..++.....+++.+..-++.++++.+.+....|++.++..++.+++++.+|+++.|.|. |+.++.|.+
T Consensus        31 t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~i  110 (488)
T KOG2325|consen   31 TNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFL  110 (488)
T ss_pred             CchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHH
Confidence            3477888888889999998888777776677776555555555999999999999999999999999996 788899999


Q ss_pred             HHHHHHHHH-hc---cc-chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccc
Q 016986          127 PMIIGASIS-AT---TR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (379)
Q Consensus       127 ~~~~~~~~~-~~---~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  201 (379)
                      +..+++++. +.   .+ ..+.++++|++.|+|.|... ..-+|+++....++|.++++....+..+|.++||.++..+.
T Consensus       111 i~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~  189 (488)
T KOG2325|consen  111 IAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFA-VLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT  189 (488)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHH-HHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence            999999887 33   23 57788899999999877654 67799999998999999999999988888888888776554


Q ss_pred             ccc--h----------hhHHHHHHHHHHHHHHHHHH-hhcCCChh
Q 016986          202 EIA--G----------WWRICFWVSIVPAAILCLAM-VFCAESPH  233 (379)
Q Consensus       202 ~~~--~----------~wr~~f~~~~~~~~~~~~~~-~~~~e~p~  233 (379)
                      ...  |          .+..+-|+.++..++.++.. +++.|.++
T Consensus       190 ~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  190 PLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             hhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence            321  1          13455666666666665544 45667643

>PRK11462 putative transporter; Provisional

Probab=99.68  E-value=1.2e-14  Score=133.03  Aligned_cols=253  Identities=15%  Similarity=0.107  Sum_probs=165.9

Q ss_pred             hhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhcc----chhHH-HHHHHhHHHHHHHHHHhcccc------h
Q 016986           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRR-AFQLCALPMIIGASISATTRN------L  141 (379)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~  141 (379)
                      ....+.+..|++....  |++..+.-+--++..|+.|.++||    +|||+ .++++.+..+++.+++-..++      .
T Consensus        32 l~~fyt~~~Gl~~~~~--g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~  109 (460)
T PRK11462         32 MMFFYTDIFGIPAGFV--GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKM  109 (460)
T ss_pred             HHHHHHHhhCCCHHHH--HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHH
Confidence            3445567788876665  888888888899999999999995    78864 455576777777666544442      3


Q ss_pred             HHHHHHHHHHHhhhchhhHHHHHHHHhhcC-CCcchhHHHHHHHHHHHHHHHHHhhcccccccch------hhHHHHHHH
Q 016986          142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG------WWRICFWVS  214 (379)
Q Consensus       142 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~------~wr~~f~~~  214 (379)
                      ..+.+.-.+..++.........++.+|..+ ++||++..++...+..+|..+++.+...+....+      +|+....+.
T Consensus       110 ~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~  189 (460)
T PRK11462        110 IYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVL  189 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence            445556667788888888888899999997 7999999999999999887777666443332211      267666665


Q ss_pred             HHHHHHHHHHHh-hcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHH
Q 016986          215 IVPAAILCLAMV-FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG  293 (379)
Q Consensus       215 ~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (379)
                      +++.+++.+..+ ..+|.++     .+.                            ++.+.....+..++||.++.....
T Consensus       190 ~ii~~i~~~i~~~~~kE~~~-----~~~----------------------------~~~~~~~~l~~~~~Nk~~~~l~~~  236 (460)
T PRK11462        190 SVVAFMMLAFCFFTTKERVE-----APP----------------------------TTTSMREDLRDIWQNDQWRIVGLL  236 (460)
T ss_pred             HHHHHHHHHHHHhcceeccC-----CCc----------------------------cCCCHHHHHHHHhCChHHHHHHHH
Confidence            555544443333 2344321     000                            000112345677888888777655


Q ss_pred             HHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Q 016986          294 STLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM  361 (379)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~  361 (379)
                      .++.............+|.....+... ..+.......++.+++.++++++.||+++|+....+....
T Consensus       237 ~~~~~~~~~~~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~  303 (460)
T PRK11462        237 TIFNILAVCVRGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALL  303 (460)
T ss_pred             HHHHHHHHHHHHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            555555444444455555555443221 2335566777888999999999999999988766444433

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.67  E-value=1.4e-15  Score=133.03  Aligned_cols=289  Identities=19%  Similarity=0.206  Sum_probs=175.2

Q ss_pred             HHHHHHhhhhccccchhhhhhh-hccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHH--HHHH-H
Q 016986           58 LSSFLFGYHLGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM--IIGA-S  133 (379)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~--~~~~-~  133 (379)
                      ...+...+..+...|..+...+ +.|++.++.  |.+.++..+...+.+|+.|.++||+|.||-++....+.  ..+. +
T Consensus        14 ~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~i--G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff   91 (412)
T PF01306_consen   14 LFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEI--GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFF   91 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccccCCCHHHH--HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence            3334444445555666666555 489988888  99999999999999999999999999666544433222  2222 2


Q ss_pred             HHhcc----cch-HHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhH
Q 016986          134 ISATT----RNL-IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (379)
Q Consensus       134 ~~~~~----~~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr  208 (379)
                      ...+.    .|. ...+++-...|+......|+.-+++.++.  ++.+.-.|=.-+..++|.+++..++|.+.+..+  +
T Consensus        92 ~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p--~  167 (412)
T PF01306_consen   92 IYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNINP--N  167 (412)
T ss_dssp             HHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCc--c
Confidence            22222    232 23334444556666666777777776665  233445566667788898899999998887543  6


Q ss_pred             HHHHHHHHHHHHHHHHHhhcC-CChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccch
Q 016986          209 ICFWVSIVPAAILCLAMVFCA-ESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (379)
Q Consensus       209 ~~f~~~~~~~~~~~~~~~~~~-e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (379)
                      ..|++....+++..++.++.+ +.++    +.+.++..                     ..++++....+..+++|+|++
T Consensus       168 ~~fwi~s~~~~il~lll~~~~~~~~~----~~~~~~~~---------------------~~~~~~~~~~~~~~l~k~~~f  222 (412)
T PF01306_consen  168 IIFWIASAAAIILLLLLLLLKPDVPP----QAEVADAL---------------------GAKKDKVSLKDVLSLFKMRNF  222 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHSS---SSS----SS-SSTTS---------------------SS------HHHHHHHTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcCch----hhhhhccc---------------------ccCCCCCcHHHHHHHhcchhH
Confidence            777876666555555444433 3221    00000000                     000111112345688999999


Q ss_pred             hHHHHHHHHHHHHHhhchhHHHHhHHHHHHHc---CCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Q 016986          288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSA---GLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVIC  364 (379)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~  364 (379)
                      |.+.+........+.......+.|....++..   ....|++.....+.+++...+..++.+|+|.|+.++++..++.+=
T Consensus       223 w~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iR  302 (412)
T PF01306_consen  223 WFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIR  302 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHH
Confidence            98776655555444444444555554433221   112567888888999999999999999999999999999888888


Q ss_pred             HHHHHHHHHhhhh
Q 016986          365 SSISLILEAFLVL  377 (379)
Q Consensus       365 ~~~~~~~~~~~~~  377 (379)
                      .+...+.++.+.+
T Consensus       303 i~~~~~~~~~~~i  315 (412)
T PF01306_consen  303 IIGSGFATNPWVI  315 (412)
T ss_dssp             HHHHHT--SHHHH
T ss_pred             HHHHhhhcchHHH
Confidence            7877777666543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.66  E-value=4.5e-16  Score=143.31  Aligned_cols=301  Identities=15%  Similarity=0.167  Sum_probs=219.2

Q ss_pred             HHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHH
Q 016986           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (379)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~  132 (379)
                      +.+..+..+..++..+.+...+..+.+.|+++.++.  |++.+.+-++..+...+..+..-|.-|-+.+-.|++++++++
T Consensus        99 l~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~s--G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   99 LVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQS--GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcc--eeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            344555566667777788889999999999998887  999999999999999999999999999999999999999999


Q ss_pred             HHHhcc--------------------c------------------------------c-hH-HHHHHHHHHHhhhchhhH
Q 016986          133 SISATT--------------------R------------------------------N-LI-GMLLGRFVVGTGMGLGPT  160 (379)
Q Consensus       133 ~~~~~~--------------------~------------------------------~-~~-~l~~~r~l~G~~~~~~~~  160 (379)
                      +++++=                    +                              + ++ .++++.++.|+|..+.++
T Consensus       177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t  256 (735)
T KOG3626|consen  177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT  256 (735)
T ss_pred             HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence            998761                    0                              0 22 455679999999999999


Q ss_pred             HHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccc------------------hhhHHHHHHHHHHHHHHH
Q 016986          161 VAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA------------------GWWRICFWVSIVPAAILC  222 (379)
Q Consensus       161 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------------------~~wr~~f~~~~~~~~~~~  222 (379)
                      .+.+|+-|...+++-+..+|+......+|.++|.++++.+.+..                  |-|+.-|++.+.+.++..
T Consensus       257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a  336 (735)
T KOG3626|consen  257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA  336 (735)
T ss_pred             CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988775321                  128888889888888888


Q ss_pred             HHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHh
Q 016986          223 LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL  302 (379)
Q Consensus       223 ~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (379)
                      +.++++|.+.+..   .++.+ .+..+.........+   ......+.-+..+...+++++|+.+....+...+......
T Consensus       337 ~p~f~fPk~lp~~---~~~~~-~~~~~~~k~~~~~~~---~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~  409 (735)
T KOG3626|consen  337 VPLFFFPKELPKS---QKRKR-ARDLHVLKTESGGAK---SDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAIT  409 (735)
T ss_pred             HHHHhCcccCccc---cccch-hhhhccccccccccc---CCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHh
Confidence            8888888764311   11000 000000000000000   0000000001223456888999999999999988888888


Q ss_pred             hchhHHHHhHHHHHHHcCCChhHHHHHH-HHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHH
Q 016986          303 SGINAIFYFSSSVFKSAGLSSGLANVFV-GIANLLGSVVAMVLMDKLG--RKALLQWSFFSMV  362 (379)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~  362 (379)
                      ...+++|-|+...++.+...+..+.... ..+..+|.+++|++..|+.  .|....+..+...
T Consensus       410 G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~  472 (735)
T KOG3626|consen  410 GYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSV  472 (735)
T ss_pred             hHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHH
Confidence            8888999999988887776666555333 3455678899999999874  3444444433333

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.65  E-value=4.2e-15  Score=134.70  Aligned_cols=158  Identities=23%  Similarity=0.188  Sum_probs=131.8

Q ss_pred             cchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHH
Q 016986           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV  150 (379)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  150 (379)
                      ....|.+.++.|.+..+.  +.+.+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+..++
T Consensus       240 ~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
T PRK11551        240 LNWLPSLLVGQGLSRSQA--GLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFA  317 (406)
T ss_pred             HHHHHHHHHhCCCChhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            345677778888877666  889999999999999999999999999999988877777777777778888888888888


Q ss_pred             HHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhhcCC
Q 016986          151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE  230 (379)
Q Consensus       151 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e  230 (379)
                      .|++.+...+...++..|.+|+++|+++.++.+....+|..++|.+++.+.++.++|...++......++..+..+++.+
T Consensus       318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (406)
T PRK11551        318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVS  397 (406)
T ss_pred             HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99988888888899999999999999999999999999999999999999887665777777666665555555444433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.65  E-value=9.2e-15  Score=131.70  Aligned_cols=155  Identities=14%  Similarity=0.187  Sum_probs=126.5

Q ss_pred             chhhh-hhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHH
Q 016986           72 EPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV  150 (379)
Q Consensus        72 ~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  150 (379)
                      ...|. +++++|.+..+.  +++.+....+..++.++.|+++||+|||+.+..+.+...+........++.+.+++.+++
T Consensus       237 ~~~p~~l~~~~~~~~~~~--g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  314 (393)
T PRK15011        237 INMPLFIINELHLPEKLA--GVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLL  314 (393)
T ss_pred             HHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            34554 456788876655  777777777778899999999999999998888776666655555567788888889999


Q ss_pred             HHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhhcCC
Q 016986          151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE  230 (379)
Q Consensus       151 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e  230 (379)
                      .+++.+...+....+..|.+|+ +|+++.++++....+|..+++.+++.+.+..+ |+..|++.++..++.++..++.||
T Consensus       315 ~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        315 NAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9888888777788888999985 59999999999999999999999999998887 999999888877777777666654

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.64  E-value=1.7e-15  Score=137.83  Aligned_cols=141  Identities=12%  Similarity=0.017  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhh
Q 016986           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV  169 (379)
Q Consensus        90 ~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~  169 (379)
                      .|++.++..++..++.+++|+++||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+....++.|.
T Consensus       264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  343 (420)
T PRK09528        264 FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLN  343 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            38899999999999999999999999999999999999999988999999999999999999999888888888999999


Q ss_pred             cCCCcchhHHHH-HHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHH-hhcCCC
Q 016986          170 SPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM-VFCAES  231 (379)
Q Consensus       170 ~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~  231 (379)
                      +|++.|+...+. ++....+|.++++.+.+.+.+..| |+..|.+.++..++..++. .+++++
T Consensus       344 ~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        344 FDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             cCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999887665 677788999999999999999888 9999998766665544443 344444

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.64  E-value=1.6e-14  Score=127.78  Aligned_cols=287  Identities=19%  Similarity=0.187  Sum_probs=202.6

Q ss_pred             HHHHHHHHHhhhhccccch-hhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhcc----chh-HHHHHHHhHHH
Q 016986           55 VATLSSFLFGYHLGVVNEP-LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGR-RRAFQLCALPM  128 (379)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~----~Gr-r~~l~~~~~~~  128 (379)
                      .-.++-+............ +-.+.+.+|++....  |.+..+-=+--++.-|+.|.++||    +|| |+.++.+.+..
T Consensus        16 ~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~a--G~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~   93 (467)
T COG2211          16 GYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALA--GTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPF   93 (467)
T ss_pred             hhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHH--HHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHH
Confidence            3334444443333333333 344566788876665  777777778888999999999995    786 45666688888


Q ss_pred             HHHHHHHhcccc------hHHHHHHHHHHHhhhchhhHHHHHHHHhhcC-CCcchhHHHHHHHHHHHHHHHHHhhccccc
Q 016986          129 IIGASISATTRN------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (379)
Q Consensus       129 ~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  201 (379)
                      ++.+.++-.+++      ....++...+.+++.......-.++.+|+.+ ++||.+..++-+.+..+|.++...+.+.+.
T Consensus        94 ~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv  173 (467)
T COG2211          94 AIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLV  173 (467)
T ss_pred             HHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888877764      4455667888899988888888899999886 689999999999999988666555544443


Q ss_pred             cc-------chhhHHHHHHHHHHHHHHHHHHhh-cCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCC
Q 016986          202 EI-------AGWWRICFWVSIVPAAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDG  273 (379)
Q Consensus       202 ~~-------~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (379)
                      ..       .| |+..-.+.++++++..+..++ .+|.+.    +..+.+                        +..+.+
T Consensus       174 ~~~g~~~~~~g-~~~~~~~~~vi~~i~~l~~~~~v~ER~~----~~~~~~------------------------~~~~~~  224 (467)
T COG2211         174 KLFGGGDKALG-YQGTALVLGVIGVILLLFCFFNVKERVV----ETQPTK------------------------TGVKLK  224 (467)
T ss_pred             HHhCCCcchhh-HHHHHHHHHHHHHHHHHHHHHHhhcccC----ccccCc------------------------cccccc
Confidence            22       23 666666655555555444333 444321    000000                        001111


Q ss_pred             CcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHH
Q 016986          274 DIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKAL  353 (379)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~  353 (379)
                      ....+..+++||.+...++..++.........+...+|.+..++...............+.+++.++..++.+|+|+|++
T Consensus       225 ~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~  304 (467)
T COG2211         225 LKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKL  304 (467)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHH
Confidence            12234568899999988887777777776667777888888777777777778888888888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 016986          354 LQWSFFSMVICSSISLILE  372 (379)
Q Consensus       354 ~~~~~~~~~i~~~~~~~~~  372 (379)
                      ..++.++..++.+++.+.+
T Consensus       305 ~~~~~~~~~i~~~~~~f~~  323 (467)
T COG2211         305 FLIGLLLLAVGYLLLYFTP  323 (467)
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            9999999999999888876

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.64  E-value=1.2e-14  Score=131.42  Aligned_cols=155  Identities=15%  Similarity=0.076  Sum_probs=129.4

Q ss_pred             chhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHH
Q 016986           72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVV  151 (379)
Q Consensus        72 ~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  151 (379)
                      ..++.+.++.|.+  +.  ++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.
T Consensus       237 ~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (399)
T PRK05122        237 TFITLYYAARGWD--GA--ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALT  312 (399)
T ss_pred             HHHHHHHHHcccc--cc--hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            3445455555552  23  5667788888899999999999999999999999888888888888888888888899999


Q ss_pred             HhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 016986          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES  231 (379)
Q Consensus       152 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~  231 (379)
                      |++.+...+.......|.+|+++|+++.++++....+|..+++.+.+.+.+..| |++.|++.++..++.++..++++++
T Consensus       313 G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        313 GFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999998888888888899999999999999999999999999989999988888 8999998877777766665555444

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.63  E-value=2.2e-13  Score=123.85  Aligned_cols=252  Identities=17%  Similarity=0.169  Sum_probs=174.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHH-hHHHHHHHHHHhcc--cchHHHHHHHHHHHhhhchhhHHHHHHHH
Q 016986           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLC-ALPMIIGASISATT--RNLIGMLLGRFVVGTGMGLGPTVAALYVT  167 (379)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~-~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~  167 (379)
                      ++..++..+..++..|+.|.++|+-|+||.++.. ..+..+.+.+..+.  ++++...+.-++.-++.+.......+++.
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP  152 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLP  152 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            6778888889999999999999999977666654 44455566665553  34544455566666778888888999999


Q ss_pred             hhcCCCcc--------------------------hhHHHHHHHHHHHHHHHHHhhcccccccchh-------hHHHHHHH
Q 016986          168 EVSPPFVR--------------------------GTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-------WRICFWVS  214 (379)
Q Consensus       168 ~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-------wr~~f~~~  214 (379)
                      |..+++++                          ++..+.-.....+|.++..++.-.+....+.       -|..+.+.
T Consensus       153 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~  232 (477)
T PF11700_consen  153 DLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIV  232 (477)
T ss_pred             hhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHH
Confidence            99999888                          8888887777778877766654443322111       47888877


Q ss_pred             HHHHHHHHH-HHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHH
Q 016986          215 IVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG  293 (379)
Q Consensus       215 ~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (379)
                      ++.-++..+ .++++||.|+....++.........+++                       ...++++.+.|.....++.
T Consensus       233 a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l-----------------------~~t~k~~~~~~~~~~fLia  289 (477)
T PF11700_consen  233 ALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRL-----------------------WRTFKEIRKLRQLFLFLIA  289 (477)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHH-----------------------HHHHHHHHhChHHHHHHHH
Confidence            777655544 4566787754210011111111111111                       2245566667777788888


Q ss_pred             HHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCch--HHHHHHHHHHHHHH
Q 016986          294 STLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRK--ALLQWSFFSMVICS  365 (379)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~i~~  365 (379)
                      .+++.-...+.......|....++.+..+.....+...+.+++|.++.|++.||+|.|  +.+..+.++..+..
T Consensus       290 ~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~  363 (477)
T PF11700_consen  290 YFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIP  363 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence            8887777777777788888888888777777888899999999999999999999998  77766665554333

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.63  E-value=1.8e-15  Score=137.04  Aligned_cols=160  Identities=13%  Similarity=0.129  Sum_probs=127.1

Q ss_pred             chhhhhhhhccCCcc------hhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhccc----ch
Q 016986           72 EPLESISLDLGFNGN------TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR----NL  141 (379)
Q Consensus        72 ~~~~~i~~~~~~~~~------~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~----~~  141 (379)
                      ...+...++.|.+..      ....+...++..++..++.++.|+++||+|||+++..+.++.+++..+.....    ++
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~  308 (418)
T TIGR00889       229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY  308 (418)
T ss_pred             HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            444555566654421      12237888899999999999999999999999999999999988876666532    24


Q ss_pred             HHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHH-HHHHHHHHHHHhhcccccccch-----hhHHHHHHHH
Q 016986          142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAG-----WWRICFWVSI  215 (379)
Q Consensus       142 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~-----~wr~~f~~~~  215 (379)
                      +.+++.+++.|++.+...+....++.|++|+++|+++.++.+ ...++|.++||.++|.+.++.+     +|+..|.+.+
T Consensus       309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~  388 (418)
T TIGR00889       309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA  388 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence            567778999999999888888999999999999999999997 6788999999999999987632     2999999877


Q ss_pred             HHHHHHHHH-HhhcCCC
Q 016986          216 VPAAILCLA-MVFCAES  231 (379)
Q Consensus       216 ~~~~~~~~~-~~~~~e~  231 (379)
                      +..++..++ .++++|+
T Consensus       389 ~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       389 GYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHhCCc
Confidence            776665554 4556665

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.63  E-value=2.9e-15  Score=134.24  Aligned_cols=147  Identities=18%  Similarity=0.098  Sum_probs=123.9

Q ss_pred             chhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccch--HHHHHHHH
Q 016986           72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL--IGMLLGRF  149 (379)
Q Consensus        72 ~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~  149 (379)
                      ...+.+.++++.+.++.  +++.+.+.++..++.++.|+++||+|||+.+..+.++..++.++..+.++.  ..+++..+
T Consensus       226 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (377)
T TIGR00890       226 GLYKPYGQSLGLSDGFL--VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVA  303 (377)
T ss_pred             HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            34455667788765555  788999999999999999999999999999999999888888877777643  23445678


Q ss_pred             HHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Q 016986          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL  221 (379)
Q Consensus       150 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~  221 (379)
                      +.|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..| |++.|.+.++..++.
T Consensus       304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHh
Confidence            88888888888888899999999999999999999999999999999999998888 999998877665554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.61  E-value=7.5e-13  Score=112.29  Aligned_cols=264  Identities=17%  Similarity=0.190  Sum_probs=161.2

Q ss_pred             cchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHH
Q 016986           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV  150 (379)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  150 (379)
                      +|+.-.+-+++|++..++  +.+....+....+..++.|.++||+|||+.-+..+++.+++++ +-.+++++.++++|++
T Consensus        54 GpY~Y~LY~~yg~~~~qI--a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvl  130 (354)
T PF05631_consen   54 GPYLYALYESYGFSEHQI--AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVL  130 (354)
T ss_pred             cchhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHH
Confidence            566666667899988887  7888888889999999999999999999999999999999886 5667899999999999


Q ss_pred             HHhhhchhhHHHHHHHH-hhcCCCcc----hhHHHHHH-HHHHHHHHHHHhhcccccccchh-hHHHHHHHHHHHHHHHH
Q 016986          151 VGTGMGLGPTVAALYVT-EVSPPFVR----GTYGAFIQ-IATCLGLMGSLLIGIPVKEIAGW-WRICFWVSIVPAAILCL  223 (379)
Q Consensus       151 ~G~~~~~~~~~~~~~i~-~~~~~~~r----~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~-wr~~f~~~~~~~~~~~~  223 (379)
                      .|++.+.....-.++.. |.-..+.+    +.-.+... ...++-.+++.+++..+.+..+. -..+|..+.+..++..+
T Consensus       131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~  210 (354)
T PF05631_consen  131 GGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAV  210 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence            99999999888766654 44322212    22222112 12222234444455555544331 36788887777666655


Q ss_pred             HHh-hcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHh
Q 016986          224 AMV-FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL  302 (379)
Q Consensus       224 ~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (379)
                      +.. ..+|.+..   ..+..+..+.                          ....++.+.+||+.+.+-+...++   ..
T Consensus       211 ~I~~~W~ENyg~---~~~~~~~~~~--------------------------~~~a~~~i~~d~ril~LG~~qslF---E~  258 (354)
T PF05631_consen  211 LILKTWPENYGD---TSSSSSLSGS--------------------------FREAWRAILSDPRILLLGLIQSLF---EG  258 (354)
T ss_pred             HHHhcccccCCC---cccccchHHH--------------------------HHHHHHHHHcCchhHHHHHHHHHH---HH
Confidence            543 34554210   0000000000                          012344566667666554433333   33


Q ss_pred             hchhHHHHhHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHHHHHH
Q 016986          303 SGINAIFYFSSSVFK-SAGLSSGLANVFVGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMVICSSISL  369 (379)
Q Consensus       303 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~  369 (379)
                      +.+..+..|.|.... ..+..-|+++..+.++.++|+.+..++..+ ......+.....+.++++.+-.
T Consensus       259 smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~aa~~l~~pv  327 (354)
T PF05631_consen  259 SMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAVAAVSLAIPV  327 (354)
T ss_pred             HHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444322 223456899999999999999888765554 3333444444444444444333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.61  E-value=1.8e-14  Score=127.72  Aligned_cols=163  Identities=22%  Similarity=0.341  Sum_probs=141.8

Q ss_pred             HHhhhhccccchhhhhhhhc-cCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHH-HHHHHhHHHHHHHHHHhccc
Q 016986           62 LFGYHLGVVNEPLESISLDL-GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR-AFQLCALPMIIGASISATTR  139 (379)
Q Consensus        62 ~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~-~l~~~~~~~~~~~~~~~~~~  139 (379)
                      .............|.+.++. |.+..+.  ++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  263 (352)
T cd06174         186 LLSFGYYGLLTYLPLYLQEVLGLSAAEA--GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP  263 (352)
T ss_pred             HHHhHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            33334444455666666654 7766555  89999999999999999999999999999 99999999999999999999


Q ss_pred             chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Q 016986          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA  219 (379)
Q Consensus       140 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~  219 (379)
                      +.+.+.+..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+ |+..|++.++..+
T Consensus       264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~~  342 (352)
T cd06174         264 SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALAL  342 (352)
T ss_pred             cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998877 8999999888877


Q ss_pred             HHHHHHhh
Q 016986          220 ILCLAMVF  227 (379)
Q Consensus       220 ~~~~~~~~  227 (379)
                      +..+..++
T Consensus       343 i~~i~~~~  350 (352)
T cd06174         343 LAALLLLL  350 (352)
T ss_pred             HHHHHhee
Confidence            77665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.61  E-value=8.1e-14  Score=124.52  Aligned_cols=226  Identities=14%  Similarity=0.068  Sum_probs=148.9

Q ss_pred             chhhhhHhHHhhhccccCCCCCcccchhhh-hccCCcc-cc----cCCCccchhHHHHHHHHHHHHHHhhhhccccchhh
Q 016986            2 WGRQREASMMYKRTSSRDRSSTFDVEETTA-LVQNGTE-VE----NTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLE   75 (379)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (379)
                      +++.+|+++..+..+..+++++...+...+ ..++.++ .+    +.-.++..++.....+.+......-+...+..+..
T Consensus       215 k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst  294 (485)
T KOG0569|consen  215 KGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYST  294 (485)
T ss_pred             cCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHH
Confidence            678889999988887665444332221111 1111111 11    00111122232222222222222233445666778


Q ss_pred             hhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhccc---chH------HHHH
Q 016986           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR---NLI------GMLL  146 (379)
Q Consensus        76 ~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~---~~~------~l~~  146 (379)
                      .+-++-|++.++.  .+......+...+..+.+..+.||+|||+.++.++.+..+..+++....   +..      ..++
T Consensus       295 ~i~~~aG~~~~~a--~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~  372 (485)
T KOG0569|consen  295 SIFKTAGFTPEEA--QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIA  372 (485)
T ss_pred             HHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            8889999988877  5788888888999999999999999999999999999888887766441   111      1233


Q ss_pred             HHHHHHhhhch-hhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH-H
Q 016986          147 GRFVVGTGMGL-GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL-A  224 (379)
Q Consensus       147 ~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~-~  224 (379)
                      +.++..++.+. ..|+..-+.+|.+|++.|+.++++......+..++-...-..+.+..|.  +.|+...++.++..+ .
T Consensus       373 ~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~~~~~~i~~  450 (485)
T KOG0569|consen  373 AIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIPLAIFLIYL  450 (485)
T ss_pred             HHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHH
Confidence            34443333333 3567888999999999999999999999999988888887888777773  666666666665554 4


Q ss_pred             HhhcCCC
Q 016986          225 MVFCAES  231 (379)
Q Consensus       225 ~~~~~e~  231 (379)
                      +..+|||
T Consensus       451 ~~~lPET  457 (485)
T KOG0569|consen  451 YRYLPET  457 (485)
T ss_pred             HHhCccc
Confidence            5679999

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.60  E-value=4.7e-14  Score=126.59  Aligned_cols=156  Identities=12%  Similarity=-0.004  Sum_probs=132.1

Q ss_pred             hhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHH
Q 016986           65 YHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM  144 (379)
Q Consensus        65 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l  144 (379)
                      ..........|.+.+|.|.+....  |++.++..++..++.++.+++.||+|+|+.+.++.+...+..+..+++++.+.+
T Consensus       219 ~~~~~~~~~~~~~l~~~g~s~~~~--g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~  296 (382)
T TIGR00902       219 GAHAAYYGFSAIYWQAAGISASAT--GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLI  296 (382)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHhHH--HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHH
Confidence            333334446666667788877666  888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHH-HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Q 016986          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (379)
Q Consensus       145 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~  223 (379)
                      ++.+++.|+..+...+....++.+. |+++|+++.++++ ...++|..+++.++|.+.++.+ + ..|++.+..+++.++
T Consensus       297 ~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~~~~  373 (382)
T TIGR00902       297 FLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAAAFF  373 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHH
Confidence            9999999999999999999999998 9999999999986 5788999999999999999887 5 556665555555444


Q ss_pred             HH
Q 016986          224 AM  225 (379)
Q Consensus       224 ~~  225 (379)
                      +.
T Consensus       374 ~~  375 (382)
T TIGR00902       374 LI  375 (382)
T ss_pred             HH
Confidence            33

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.59  E-value=2.3e-14  Score=131.37  Aligned_cols=164  Identities=10%  Similarity=0.049  Sum_probs=128.9

Q ss_pred             HHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhcc--chhHHHHHH--HhHHHHHHHH
Q 016986           58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG--VGRRRAFQL--CALPMIIGAS  133 (379)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~--~Grr~~l~~--~~~~~~~~~~  133 (379)
                      ...++...........+|.+.++.|.+..+.  +++.++..++..++.++.|+++||  +++|+...+  +.++.+++.+
T Consensus       248 ~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~l  325 (455)
T TIGR00892       248 SGNVIMFLGFFAPIIFLVPYAKDKGVDEYEA--AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHL  325 (455)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444456677777888876666  899999999999999999999997  344433333  4444455556


Q ss_pred             HHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Q 016986          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (379)
Q Consensus       134 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~  213 (379)
                      +....++++.+++.+++.|++.+...+...+++.|.+|++++++..++++....+|.++||.+++.+.+..++|++.|++
T Consensus       326 l~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~  405 (455)
T TIGR00892       326 LCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYA  405 (455)
T ss_pred             HHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHH
Confidence            66778899999999999999999999999999999999999999999999999999999999999998876548999988


Q ss_pred             HHHHHHHHHH
Q 016986          214 SIVPAAILCL  223 (379)
Q Consensus       214 ~~~~~~~~~~  223 (379)
                      .++..++..+
T Consensus       406 ~~~~~li~~~  415 (455)
T TIGR00892       406 SGSIVVSAGL  415 (455)
T ss_pred             hhHHHHHHHH
Confidence            7776655443

>PRK12382 putative transporter; Provisional

Probab=99.59  E-value=5.1e-14  Score=126.97  Aligned_cols=151  Identities=17%  Similarity=0.145  Sum_probs=128.0

Q ss_pred             cchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHH
Q 016986           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV  150 (379)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  150 (379)
                      ....|.+.++.+.+  +.  ++..+.+.++..+++++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++..++
T Consensus       236 ~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (392)
T PRK12382        236 GTFVSLYFASKGWA--MA--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAAL  311 (392)
T ss_pred             HHHHHHHHHhcCCc--hh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            34445555565653  23  566677888888999999999999999999999999988888888888888888889999


Q ss_pred             HHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHh
Q 016986          151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV  226 (379)
Q Consensus       151 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~  226 (379)
                      .|++.+...+.....+.|.+|+++|+++.++++....+|..++|.+.+.+.++.| |++.|.+.++..++..+..+
T Consensus       312 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        312 TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHH
Confidence            9999998888888889999999999999999999999999999999999999888 99999998777766655544

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.57  E-value=8.7e-14  Score=124.73  Aligned_cols=149  Identities=19%  Similarity=0.286  Sum_probs=124.0

Q ss_pred             hhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhc
Q 016986           77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG  156 (379)
Q Consensus        77 i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  156 (379)
                      +.+++|.+..+.  +++.+.......++.++.|++.||+|||+++..+.++..+..+...+.++.+.+++.+++.|++.+
T Consensus       226 ~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  303 (375)
T TIGR00899       226 IIHELGLPDKLA--GLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIG  303 (375)
T ss_pred             HHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788876665  777777777777888999999999999999988877766666666677888888888999999998


Q ss_pred             hhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhhcC
Q 016986          157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCA  229 (379)
Q Consensus       157 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~  229 (379)
                      ...+....++.|..|+ +++++.++++....+|..++|.+++.+.+..+ |+..|++.++..++..+...+++
T Consensus       304 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  374 (375)
T TIGR00899       304 ILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCLLLIK  374 (375)
T ss_pred             HHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHheec
Confidence            8888888999999875 56799999999999999999999999988888 89999988887777766665554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.56  E-value=4.6e-14  Score=128.06  Aligned_cols=156  Identities=15%  Similarity=0.129  Sum_probs=128.5

Q ss_pred             cchhhhhhhhccCCcch--hHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHH
Q 016986           71 NEPLESISLDLGFNGNT--LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR  148 (379)
Q Consensus        71 ~~~~~~i~~~~~~~~~~--~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r  148 (379)
                      .+..+.+..+.+.+.++  ...+.+.+++.++..++.++.|+++||+|||+.+..+..+..++.+...+.++.+.+++.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (408)
T PRK09874        239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILR  318 (408)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            44455554443322222  1235667777888889999999999999999999999888888888888888888888999


Q ss_pred             HHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhh
Q 016986          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF  227 (379)
Q Consensus       149 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~  227 (379)
                      ++.|++.+...+....++.+..|+++|++.+++.+....+|..+||.+++.+.+..+ |++.|++.++..++..+..++
T Consensus       319 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        319 FLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998888 899999988777776655443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.55  E-value=2.2e-13  Score=126.72  Aligned_cols=163  Identities=12%  Similarity=0.022  Sum_probs=107.4

Q ss_pred             cccchhhhhhhhccCCcchhH---------HHH-HHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcc
Q 016986           69 VVNEPLESISLDLGFNGNTLA---------EGL-VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT  138 (379)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~---------~~~-~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~  138 (379)
                      ......|.+.++.|.+..+..         ... ...+..++..++.++.++++||+|||++++.+.++.+++.++.++.
T Consensus       306 ~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~  385 (502)
T TIGR00887       306 GVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFA  385 (502)
T ss_pred             ccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            344457777788887643210         001 2333445666788899999999999999998888777776655543


Q ss_pred             c----chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch---------
Q 016986          139 R----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG---------  205 (379)
Q Consensus       139 ~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~---------  205 (379)
                      .    +...+...-+...++.....+....+.+|.+|.+.|+++.++.+....+|.+++|.+.+.+.+..+         
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  465 (502)
T TIGR00887       386 YNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGI  465 (502)
T ss_pred             HHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccc
Confidence            2    111111111112222223345666778999999999999999999999999999999988876421         


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcCCC
Q 016986          206 WWRICFWVSIVPAAILCLAMVFCAES  231 (379)
Q Consensus       206 ~wr~~f~~~~~~~~~~~~~~~~~~e~  231 (379)
                      ++...|++.++..++..+..+++||+
T Consensus       466 ~~~~~~~i~~~~~~~~~i~~~~lpEt  491 (502)
T TIGR00887       466 WMGHVLEIFALFMFLGILFTLLIPET  491 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHheEeccC
Confidence            13556666666666555555677887

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.55  E-value=1.9e-12  Score=111.66  Aligned_cols=266  Identities=17%  Similarity=0.117  Sum_probs=180.9

Q ss_pred             hhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccch-----hHHHHHH-HhHHHHHHHHHHhcc-----c------
Q 016986           77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-----RRRAFQL-CALPMIIGASISATT-----R------  139 (379)
Q Consensus        77 i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~G-----rr~~l~~-~~~~~~~~~~~~~~~-----~------  139 (379)
                      +..|+++...-.  +.+.+...+. ....+.+|+.||+.+     ||..+++ |......+..+..++     .      
T Consensus         6 MIvEL~vpA~lv--~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~   82 (403)
T PF03209_consen    6 MIVELGVPAWLV--ALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSS   82 (403)
T ss_pred             HHHHhccHHHHH--HHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence            456777754433  6666666554 457899999999999     8866665 666666655554432     2      


Q ss_pred             --ch-H--HHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Q 016986          140 --NL-I--GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (379)
Q Consensus       140 --~~-~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~  214 (379)
                        .+ +  ...+...+.|+|.+...+...++++|..|+|+|+++.++......+|.+++..+.+.+.+.+..-|..-.+.
T Consensus        83 ~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~  162 (403)
T PF03209_consen   83 GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQ  162 (403)
T ss_pred             cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHH
Confidence              22 2  233457788999999999999999999999999999999999999999999999887776654334333332


Q ss_pred             HHH--HHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHH
Q 016986          215 IVP--AAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (379)
Q Consensus       215 ~~~--~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (379)
                      ...  .+...++..+-.|.+..    ++ .+                      ..++++......++++..+|..+.++.
T Consensus       163 ~~a~i~~~l~~ia~wg~E~r~~----~~-~~----------------------~~~~~~~~f~~a~~~~~~~~~a~~f~~  215 (403)
T PF03209_consen  163 GVALIALLLNLIALWGQEPRRS----RR-AA----------------------AAERPRPPFREAWRQVWASPQARRFFV  215 (403)
T ss_pred             HHHHHHHHHHHHHHHhcccCCc----cc-cc----------------------CCCCCCccHHHHHHHHHhCCChhHHHH
Confidence            222  22222222333333110    00 00                      001122333456778888898888887


Q ss_pred             HHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH-hhCchHHHHHHHHHHHHHHHHHHHH
Q 016986          293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMD-KLGRKALLQWSFFSMVICSSISLIL  371 (379)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~i~~~~~~~~  371 (379)
                      ..++....++..-..+-.|--++++.+..+...+....+.+..+|....|++.. |.++++...+++..+.+++.++.+.
T Consensus       216 fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a  295 (403)
T PF03209_consen  216 FLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA  295 (403)
T ss_pred             HHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            777777666665556666667777777666778889999999999999998776 5777888888888888887776654


Q ss_pred             H
Q 016986          372 E  372 (379)
Q Consensus       372 ~  372 (379)
                      .
T Consensus       296 ~  296 (403)
T PF03209_consen  296 G  296 (403)
T ss_pred             H
Confidence            3

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.55  E-value=1.1e-12  Score=115.43  Aligned_cols=173  Identities=18%  Similarity=0.234  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHhhhhc-cccchhhhhhhhcc----CCcchhHHHHHHHHHHHHHHHHHHhHHhhhcc-chhHHHHHHHhHH
Q 016986           54 LVATLSSFLFGYHLG-VVNEPLESISLDLG----FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALP  127 (379)
Q Consensus        54 ~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~----~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~  127 (379)
                      ..++..-+-..+... +-+...-++..+++    ++++++  .-+.++|..-.-+...++|+++|| +|+|+.+..|.++
T Consensus        24 ~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A--~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail  101 (498)
T COG3104          24 YLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHA--TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAIL  101 (498)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhh--HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            344444454444432 22334444555555    877766  556667766666888999999999 5999999999999


Q ss_pred             HHHHHHHHhccc--chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCC--CcchhHHHHHHHHHHHHHHHHHhhccccccc
Q 016986          128 MIIGASISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (379)
Q Consensus       128 ~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  203 (379)
                      +.+|.++.+.+.  +...+.++-.+.++|.|..-+...++++|.+|+  .+|-...++++++.++|++++|++.+++.+.
T Consensus       102 ~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~  181 (498)
T COG3104         102 MAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN  181 (498)
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh
Confidence            999999999884  788999999999999999999999999999975  3467788999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhhcC
Q 016986          204 AGWWRICFWVSIVPAAILCLAMVFCA  229 (379)
Q Consensus       204 ~~~wr~~f~~~~~~~~~~~~~~~~~~  229 (379)
                      .+ |...|..+++-....++.++..+
T Consensus       182 ~g-~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         182 YG-WHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             hC-HHHHHHHHHHHHHHHHHHHHHcc
Confidence            99 99999998888777777665544

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.54  E-value=6.2e-14  Score=126.45  Aligned_cols=157  Identities=18%  Similarity=0.146  Sum_probs=117.7

Q ss_pred             HHHHhhhhccccchhhhhh-hhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHH--HHHh
Q 016986           60 SFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA--SISA  136 (379)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~--~~~~  136 (379)
                      .+.............|.+. +++|.+.++.  +...+...++..++.++.|+++||+|||+.+..+..+..+..  +...
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~  305 (394)
T TIGR00883       228 VIATTTTFYLITTYLPTYLTQTLGLSANSA--LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA  305 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334445566655 6778876665  788888999999999999999999999998776554443332  2222


Q ss_pred             c--ccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHH-HHHHHHHHHHHHHhhcccccccchhhHHHHHH
Q 016986          137 T--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (379)
Q Consensus       137 ~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~  213 (379)
                      +  .++.+.+++..++.|++.+...+...+++.|.+|+++|+++.++ ++.+..+|..++|.+++.+.++.+.|++.++.
T Consensus       306 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~  385 (394)
T TIGR00883       306 LLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYY  385 (394)
T ss_pred             HhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHH
Confidence            2  35667777788899998888999999999999999999999998 45667788999999999999887757777666


Q ss_pred             HHHHH
Q 016986          214 SIVPA  218 (379)
Q Consensus       214 ~~~~~  218 (379)
                      .+...
T Consensus       386 ~~~~~  390 (394)
T TIGR00883       386 LAALA  390 (394)
T ss_pred             HHHHH
Confidence            55443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.54  E-value=1.7e-13  Score=126.39  Aligned_cols=171  Identities=16%  Similarity=0.122  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHhhhhccccchhhh-hhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHH
Q 016986           53 VLVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (379)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~  131 (379)
                      +....+..++...........+|. +.+++|++..+.  ++..+.+.++..++.+++|+++||+|||+.++....+..++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a--~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~  337 (467)
T PRK09556        260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDA--INTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALII  337 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            334444444444443334556675 456789887766  78889999999999999999999999998776654444333


Q ss_pred             H--HHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHH-HHHHHHhhcccccc------
Q 016986          132 A--SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKE------  202 (379)
Q Consensus       132 ~--~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~------  202 (379)
                      .  +.....++...+.+.+++.|++.............|.+|+++||.+.|+.+....+ |..++|.+.|.+.+      
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~  417 (467)
T PRK09556        338 FTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGT  417 (467)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccc
Confidence            2  22334456666777888888654443333346777999999999999999888776 77899999998888      


Q ss_pred             ------cchhhHHHHHHHHHHHHHHHHHHh
Q 016986          203 ------IAGWWRICFWVSIVPAAILCLAMV  226 (379)
Q Consensus       203 ------~~~~wr~~f~~~~~~~~~~~~~~~  226 (379)
                            ..+ |+..|++..+..++..+..+
T Consensus       418 ~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        418 PIFGYTLTG-WAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             ccccccccC-hHHHHHHHHHHHHHHHHHHH
Confidence                  456 99999887666666555444

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.54  E-value=3.3e-13  Score=125.11  Aligned_cols=159  Identities=18%  Similarity=0.065  Sum_probs=114.4

Q ss_pred             ccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcc--cc-hH-HHH
Q 016986           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT--RN-LI-GML  145 (379)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~--~~-~~-~l~  145 (379)
                      .....|.+.++.|.+....  .+......++..++.++.|+++||+|||++++.+.++.+++.++.+..  ++ .. ...
T Consensus       290 ~~~~~p~i~~~~g~~~~~~--~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~  367 (479)
T PRK10077        290 VLYYAPEIFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL  367 (479)
T ss_pred             HHHHHHHHHHHcCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHH
Confidence            3456688888888876655  566667778888999999999999999999999999988887776533  12 11 222


Q ss_pred             HHHHHHHhhhch-hhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcc------cccccchhhHHHHHHHHHHH
Q 016986          146 LGRFVVGTGMGL-GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI------PVKEIAGWWRICFWVSIVPA  218 (379)
Q Consensus       146 ~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~------~l~~~~~~wr~~f~~~~~~~  218 (379)
                      .+-++.+.+.+. ..+....+++|.+|+++|++++++......+|.++++.+.+      ++.+..+ |++.|++.++..
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~  446 (479)
T PRK10077        368 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCMG  446 (479)
T ss_pred             HHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHHH
Confidence            233444444433 33667899999999999999999999998888888765544      3334556 788888876666


Q ss_pred             HHHHHHH-hhcCCC
Q 016986          219 AILCLAM-VFCAES  231 (379)
Q Consensus       219 ~~~~~~~-~~~~e~  231 (379)
                      ++..+.. ++.||+
T Consensus       447 ~~~~~~~~~~~~e~  460 (479)
T PRK10077        447 VLAALFMWKFVPET  460 (479)
T ss_pred             HHHHHHHHhccccC
Confidence            6555544 446666

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.54  E-value=1.4e-13  Score=124.16  Aligned_cols=168  Identities=18%  Similarity=0.152  Sum_probs=116.6

Q ss_pred             HHHHHHHHHhhhhccccchhhhh-hhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHH--HH------HHHh
Q 016986           55 VATLSSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR--AF------QLCA  125 (379)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~--~l------~~~~  125 (379)
                      ...+..++............|.+ .+++|.+..+.  +++.+...++..++.++.|+++||+|||+  ..      ..+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (399)
T TIGR00893       219 GLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEA--GFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAG  296 (399)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence            33344444444444445555655 45677766555  88899999999999999999999999996  11      1111


Q ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch
Q 016986          126 LPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (379)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (379)
                      ++..+........++....+....+.+.+.+ ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g  375 (399)
T TIGR00893       297 LVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG  375 (399)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence            1122222222223344444444445454444 788899999999999999999999999999999999999999998876


Q ss_pred             hhHHHHHHHHHHHHHHHHHH
Q 016986          206 WWRICFWVSIVPAAILCLAM  225 (379)
Q Consensus       206 ~wr~~f~~~~~~~~~~~~~~  225 (379)
                      .|+..|++.++..++..+..
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       376 SFAGALMVVAALALIGALSY  395 (399)
T ss_pred             chhHHHHHHHHHHHHHHHHH
Confidence            57888888777666655444

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.54  E-value=9.3e-14  Score=128.64  Aligned_cols=174  Identities=15%  Similarity=0.007  Sum_probs=127.7

Q ss_pred             HHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHH
Q 016986           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (379)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~  134 (379)
                      ...+..+.............|.+.+++|.+..+.  ++......++..++.++.|+++||+|||+.+..+.++.+++.++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  365 (481)
T TIGR00879       288 GVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHA--FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFV  365 (481)
T ss_pred             HHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            3333334333334445566788888889887555  78888889999999999999999999999999998888877766


Q ss_pred             Hhc-----cc------chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccccc
Q 016986          135 SAT-----TR------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (379)
Q Consensus       135 ~~~-----~~------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  203 (379)
                      .++     .+      +...+....++.+.......+....++.|.+|+++|++++++.+....+|.+++|.+.+.+.+.
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~  445 (481)
T TIGR00879       366 LGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES  445 (481)
T ss_pred             HHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            652     11      2333333333333323334456667889999999999999999999999999999999988888


Q ss_pred             chhhHHHHHHHHHHHHHHHHHH-hhcCCC
Q 016986          204 AGWWRICFWVSIVPAAILCLAM-VFCAES  231 (379)
Q Consensus       204 ~~~wr~~f~~~~~~~~~~~~~~-~~~~e~  231 (379)
                      .+ |++.|++.++.+++..+.. ++.||+
T Consensus       446 ~~-~~~~f~~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       446 IG-VGGVFIFFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             cC-ccceehhHHHHHHHHHHHHheecccC
Confidence            77 8999988777766665554 445665

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09952 shikimate transporter; Provisional

Probab=99.52  E-value=4.8e-13  Score=122.16  Aligned_cols=154  Identities=16%  Similarity=0.123  Sum_probs=112.0

Q ss_pred             hhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhc---c-cchHHHHHHHHHH
Q 016986           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT---T-RNLIGMLLGRFVV  151 (379)
Q Consensus        76 ~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~l~  151 (379)
                      .+.+++|.+.+..  ..+.........++.+++|+++||+|||++++.+.++..++.+....   . ++...+++..++.
T Consensus       276 y~~~~~g~s~~~~--~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  353 (438)
T PRK09952        276 YSTQNLGLPRELF--LNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLA  353 (438)
T ss_pred             HHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            3456678765543  34455556667788899999999999999998887765554433222   2 2344445566777


Q ss_pred             HhhhchhhHHHHHHHHhhcCCCcchhHHHHH-HHHHHHHHHHHHhhcccccccc-hhhHHHHHHHHHHHHHHHHHHhhcC
Q 016986          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFI-QIATCLGLMGSLLIGIPVKEIA-GWWRICFWVSIVPAAILCLAMVFCA  229 (379)
Q Consensus       152 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~  229 (379)
                      |++.+...+...++++|.+|.+.|+.+.++. ..+..+|..++|.+.+.+.+.. ++|+..+.+.++..++..+..+.++
T Consensus       354 ~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~  433 (438)
T PRK09952        354 NIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMK  433 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcc
Confidence            8888888888899999999999999888885 4455688899999999887643 3388888877777777766666666


Q ss_pred             CC
Q 016986          230 ES  231 (379)
Q Consensus       230 e~  231 (379)
                      |+
T Consensus       434 ~~  435 (438)
T PRK09952        434 DN  435 (438)
T ss_pred             cc
Confidence            64

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.52  E-value=1.9e-13  Score=124.36  Aligned_cols=158  Identities=13%  Similarity=0.079  Sum_probs=131.8

Q ss_pred             cchhhhhhhh-ccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHH
Q 016986           71 NEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (379)
Q Consensus        71 ~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  149 (379)
                      ....|.+.++ +|.+....  +++.+.+.++..++.++.+++.||.++++.+..+.++.+++.++.++.++.+.+.++.+
T Consensus       243 ~~~~p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (417)
T PRK10489        243 RVLYPALADEVWQMGAAQI--GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLA  320 (417)
T ss_pred             HHhhHHHHHhccCCChhHh--HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            3456666666 88876665  89999999999999999999999988888888888888888888888898888888899


Q ss_pred             HHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH-HHHHHhhc
Q 016986          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI-LCLAMVFC  228 (379)
Q Consensus       150 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~-~~~~~~~~  228 (379)
                      +.|++.+...+...+++.|..|++.|+++.+++.....+|..+|+.+.+.+.+..| ++..++..+...++ ..+....+
T Consensus       321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T PRK10489        321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLLVL  399 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHhc
Confidence            99998888888888999999999999999999999999999999999999999888 67777765544444 44445556


Q ss_pred             CCC
Q 016986          229 AES  231 (379)
Q Consensus       229 ~e~  231 (379)
                      ++.
T Consensus       400 ~~~  402 (417)
T PRK10489        400 GEL  402 (417)
T ss_pred             ccc
Confidence            665

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.51  E-value=4.6e-13  Score=120.21  Aligned_cols=149  Identities=13%  Similarity=0.128  Sum_probs=120.7

Q ss_pred             chhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHH
Q 016986           72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVV  151 (379)
Q Consensus        72 ~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  151 (379)
                      ..+|.+.++.|.+.++.  ++..+.+.++..+++++.|++.||+|+|+++..+.+...++.+...  + ........++.
T Consensus       221 ~~lp~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~  295 (381)
T PRK03633        221 GLMPLYLNHQGMSDASI--GFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFIL  295 (381)
T ss_pred             HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHH
Confidence            45677777778776665  8888899999999999999999999999999888888777665443  2 23344567788


Q ss_pred             HhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHh
Q 016986          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV  226 (379)
Q Consensus       152 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~  226 (379)
                      |++.....|.....+.|..|+++++...+......++|.++||.+++.+.++.+ |++.|.+.+...++..+..+
T Consensus       296 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        296 GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHH
Confidence            887777889999999999998888888888888999999999999999999888 89999887777665554444

>TIGR00895 2A0115 benzoate transport

Probab=99.51  E-value=3.2e-13  Score=121.97  Aligned_cols=134  Identities=19%  Similarity=0.174  Sum_probs=108.4

Q ss_pred             hhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHH
Q 016986           65 YHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM  144 (379)
Q Consensus        65 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l  144 (379)
                      ..........|.+.+++|.+.++.  ++..+...++..++.++.|+++||+|||+.+....+......++....++.+.+
T Consensus       264 ~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (398)
T TIGR00895       264 VGVYFLTNWLPKLMVELGFSLSLA--ATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLL  341 (398)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHH
Confidence            333344556677888888876666  888999999999999999999999999955544444433333333336677778


Q ss_pred             HHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccc
Q 016986          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (379)
Q Consensus       145 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  200 (379)
                      ++..++.|++.+...+...+++.|.+|+++|+++.++......+|..++|.++|.+
T Consensus       342 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       342 LLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            88889999999999999999999999999999999999999999999999998865

>PRK03699 putative transporter; Provisional

Probab=99.51  E-value=5.9e-13  Score=120.08  Aligned_cols=155  Identities=12%  Similarity=0.073  Sum_probs=126.6

Q ss_pred             ccchhhhhh-hhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHH
Q 016986           70 VNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR  148 (379)
Q Consensus        70 ~~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r  148 (379)
                      +....|.+. +++|.+..+.  +++.+.+.++..++.++.|+++||+|||+.+..+..+..+..++....++...+.+..
T Consensus       224 ~~~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (394)
T PRK03699        224 FISWVPEYAQKKFGMSLEDA--GNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAI  301 (394)
T ss_pred             HHHHHHHHHHHHcCCChHHh--hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence            344566655 6678887766  8899999999999999999999999999999988887777777777778887777788


Q ss_pred             HHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhhc
Q 016986          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC  228 (379)
Q Consensus       149 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~  228 (379)
                      ++.|++.+..++...++..|..| +++++..+.......+|..++|.+.+.+.+..| |+..+++.++..++..+....+
T Consensus       302 ~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~  379 (394)
T PRK03699        302 LGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVMCILL  379 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHHHHHH
Confidence            88999888888888888888776 446788888888889999999999999999888 8999888766666655544443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.50  E-value=1.1e-12  Score=118.10  Aligned_cols=160  Identities=17%  Similarity=0.149  Sum_probs=123.2

Q ss_pred             cccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhccc-chHHHHHH
Q 016986           69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR-NLIGMLLG  147 (379)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~  147 (379)
                      ......|.+.+++|.+..+.  +...+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+ +...+  .
T Consensus       223 ~~~~~lp~~l~~~g~s~~~a--g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~  298 (393)
T PRK09705        223 SLIAWLPAFYIEIGASAQYS--GSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--W  298 (393)
T ss_pred             HHHHHHHHHHHHcCCChhhh--hHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--H
Confidence            33445666667788876666  8999999999999999999999999999999998887777766554333 32222  2


Q ss_pred             HHHHHhhhchhhHHHHHHHHhhcC-CCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH-H
Q 016986          148 RFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA-M  225 (379)
Q Consensus       148 r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~  225 (379)
                      -++.|++.+...+.......+..+ +++|++..++.+....++..++|.+.+++.+..|.|...|.+.++..++..+. .
T Consensus       299 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (393)
T PRK09705        299 AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITL  378 (393)
T ss_pred             HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence            346688888888877777777775 57899999999999999999999999999998776888888877666665554 4


Q ss_pred             hhcCCCh
Q 016986          226 VFCAESP  232 (379)
Q Consensus       226 ~~~~e~p  232 (379)
                      .+.||++
T Consensus       379 ~~~~~~~  385 (393)
T PRK09705        379 RFAPARF  385 (393)
T ss_pred             Hhccccc
Confidence            4566653

>PRK03545 putative arabinose transporter; Provisional

Probab=99.50  E-value=1.9e-12  Score=116.73  Aligned_cols=149  Identities=13%  Similarity=0.061  Sum_probs=119.4

Q ss_pred             hhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHH-HHHhcccchHHHHHHHHHHH
Q 016986           74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA-SISATTRNLIGMLLGRFVVG  152 (379)
Q Consensus        74 ~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G  152 (379)
                      .|.+.++.|.+.++.  +++.+.+.++..++.++.|+++||+|||++.. +..+..++. ......++.+.++++.++.|
T Consensus       229 ~~~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g  305 (390)
T PRK03545        229 EPFVQQVAGLSENFA--TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWG  305 (390)
T ss_pred             HHHHHHhcCCCccHH--HHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            344556678877666  88899999999999999999999999887654 444444443 34456678888888899999


Q ss_pred             hhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhh
Q 016986          153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF  227 (379)
Q Consensus       153 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~  227 (379)
                      ++.+...+.....+.|..| ++|++++++++....+|..+||+++|.+.++.+ ++..|++.++..++.++...+
T Consensus       306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHHH
Confidence            9887777777788888876 578999999999999999999999999999998 899999988777776655443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.50  E-value=3.6e-13  Score=122.05  Aligned_cols=140  Identities=21%  Similarity=0.179  Sum_probs=112.7

Q ss_pred             chhhh-hhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHH-HHhcccchHHHHHHHH
Q 016986           72 EPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS-ISATTRNLIGMLLGRF  149 (379)
Q Consensus        72 ~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~r~  149 (379)
                      ...|. +.+++|.+..+.  +++.+.+.++..++.++.|+++||+|||+.+..+.+...+..+ .....++.+.+.+..+
T Consensus       259 ~~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (405)
T TIGR00891       259 DLLPTYLKADLGLSPHTV--ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLF  336 (405)
T ss_pred             hhhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence            34444 456788876666  8899999999999999999999999999999888776533332 3344566677777777


Q ss_pred             HHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Q 016986          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (379)
Q Consensus       150 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~  213 (379)
                      +.|+..+...+....++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..|.|+..+..
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       337 FQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            7887777777788899999999999999999999999999999999999999987756665544

>TIGR00897 2A0118 polyol permease family

Probab=99.49  E-value=9.1e-13  Score=119.14  Aligned_cols=155  Identities=12%  Similarity=0.073  Sum_probs=118.0

Q ss_pred             cccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHH-HHhHHHHHHHHHHh-----cccchH
Q 016986           69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ-LCALPMIIGASISA-----TTRNLI  142 (379)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~-~~~~~~~~~~~~~~-----~~~~~~  142 (379)
                      ......|.+.+++|.+..+.  +++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...     ..++.+
T Consensus       240 ~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~  317 (402)
T TIGR00897       240 GFAVFLPMFVAELGFSTSEW--LQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFA  317 (402)
T ss_pred             HHHHHHHHHHHHcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHH
Confidence            34456777778888887666  78888889999999999999999999988764 33333333333322     234667


Q ss_pred             HHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Q 016986          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC  222 (379)
Q Consensus       143 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~  222 (379)
                      .+++..++.|++.+...+. ...+.|..| ++|+++.|+.+....+|..++|.+++.+.+..| |+..|++.++..++..
T Consensus       318 ~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~i~~  394 (402)
T TIGR00897       318 VALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWIFAALYVVSA  394 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHH
Confidence            7777888889888776554 456677655 589999999999999999999999999999888 8999888777776665


Q ss_pred             HHHhhc
Q 016986          223 LAMVFC  228 (379)
Q Consensus       223 ~~~~~~  228 (379)
                      +...|+
T Consensus       395 ~~~~~~  400 (402)
T TIGR00897       395 FLTAFI  400 (402)
T ss_pred             HHHHHh
Confidence            555543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00898 2A0119 cation transport protein

Probab=99.49  E-value=1e-12  Score=122.58  Aligned_cols=136  Identities=13%  Similarity=0.006  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccch--HHHHHHHHHHHhhhchhhHHHHHHHHhhc
Q 016986           93 VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL--IGMLLGRFVVGTGMGLGPTVAALYVTEVS  170 (379)
Q Consensus        93 ~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  170 (379)
                      ......+...++.++.+++.||+|||+.+.++.++.+++.++..+.++.  +..++.-++.+++.+...+....+..|.+
T Consensus       360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  439 (505)
T TIGR00898       360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY  439 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3444556677888999999999999999999999999888887776654  44555566777777778888899999999


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 016986          171 PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES  231 (379)
Q Consensus       171 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~  231 (379)
                      |++.|+.++|+.+....+|.+++|.+.+ +.+ .+ +...+.+.+...++..+..+++||+
T Consensus       440 p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~lpet  497 (505)
T TIGR00898       440 PTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-KW-LFLPLVLFGGLALLAGILTLFLPET  497 (505)
T ss_pred             cHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HH-HhhHHHHHHHHHHHHHHHHHcCcCC
Confidence            9999999999999999999999999988 433 33 5667777777777776667788887

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.47  E-value=2.2e-12  Score=115.86  Aligned_cols=147  Identities=14%  Similarity=0.072  Sum_probs=121.0

Q ss_pred             chhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHH
Q 016986           72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVV  151 (379)
Q Consensus        72 ~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  151 (379)
                      ...|.+.+|.|.+.++.  |.+.+...++..+..++.|++.||+|+|+.+..+.+..+++.++.+.+++.+.+++..++.
T Consensus       226 ~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  303 (382)
T PRK11128        226 GFSAIYWQAAGYSASTI--GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILH  303 (382)
T ss_pred             HHHHHHHHHCCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            34455657788876665  8888888889999999999999999999999999999998888888899999999999999


Q ss_pred             HhhhchhhHHHHHHHHhhcCCCcchhHHHHHH-HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Q 016986          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (379)
Q Consensus       152 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~  223 (379)
                      |++.+...+....++.+. +++++++..++++ ....+|..+||.++|.+.+..+ + ..|+..++..++.++
T Consensus       304 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        304 CGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPALF  373 (382)
T ss_pred             HHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHH
Confidence            999999999998998887 5566788888876 6667888999999999999887 5 355555555544433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.46  E-value=5.6e-13  Score=124.13  Aligned_cols=143  Identities=16%  Similarity=0.071  Sum_probs=111.5

Q ss_pred             cchhhhhh-hhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcc--cchHHHHHH
Q 016986           71 NEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT--RNLIGMLLG  147 (379)
Q Consensus        71 ~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~  147 (379)
                      ...+|.+. +++|.+..+.  +++.+.+.++..++.++.|+++||+|||++++.+.++..+..+.....  .+.+.+.+.
T Consensus       295 ~~~lp~~l~~~~g~~~~~~--g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (496)
T PRK03893        295 QALLPTYLKTDLGYDPHTV--ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLL  372 (496)
T ss_pred             HHHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            34567666 5888877666  899999999999999999999999999999988877766665544333  334444445


Q ss_pred             HHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Q 016986          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (379)
Q Consensus       148 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~  216 (379)
                      .++.+.......+....++.|.+|+++|++++++.+....+|..++|.+++.+.+..+ |+..+...+.
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~~~~  440 (496)
T PRK03893        373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALASLSF  440 (496)
T ss_pred             HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHHHHH
Confidence            5555443334455667889999999999999999999999999999999999999888 7887765443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.45  E-value=3e-11  Score=104.15  Aligned_cols=260  Identities=14%  Similarity=0.095  Sum_probs=179.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHH-HhHHHHHHHHHHhcccc--h-HHHHHHHHHHHhhhchhhHH
Q 016986           86 NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL-CALPMIIGASISATTRN--L-IGMLLGRFVVGTGMGLGPTV  161 (379)
Q Consensus        86 ~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~-~~~~~~~~~~~~~~~~~--~-~~l~~~r~l~G~~~~~~~~~  161 (379)
                      .+..++...++..+..++.+|+.|.++|+.|+||..+. ...+..++.++..++++  + +..++...+..++.......
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf  135 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF  135 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence            34445788888889999999999999999997655554 55555566666666654  4 44455678888888888889


Q ss_pred             HHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhc--c-ccc---------------ccchhhHHHHHHHHHHHHHHHH
Q 016986          162 AALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG--I-PVK---------------EIAGWWRICFWVSIVPAAILCL  223 (379)
Q Consensus       162 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~-~l~---------------~~~~~wr~~f~~~~~~~~~~~~  223 (379)
                      ..+++.+..++++-++..++-.....+|..+.-++.  . ...               +..+ =|..+.+.++.-++..+
T Consensus       136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~ri~~~l~A~W~li~~i  214 (438)
T COG2270         136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGED-VRITGLLAALWWLLFAL  214 (438)
T ss_pred             hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCcccccc-chhHHHHHHHHHHHHHh
Confidence            999999999988878777765555555544433331  0 000               2223 57888887777766665


Q ss_pred             HHh-hcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHh
Q 016986          224 AMV-FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL  302 (379)
Q Consensus       224 ~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (379)
                      ..+ ..++.++-.  ...........++                       -..+++++.++++...+++..+++.-...
T Consensus       215 Pm~~~v~~~~~~~--~~~~~~l~~g~k~-----------------------L~~t~k~i~~~~~i~~FLiA~~~~~DGv~  269 (438)
T COG2270         215 PMILNVHDAEKIS--SPPPTALRNGFKE-----------------------LKSTFKEIRGRKNLVLFLIARFFYIDGVN  269 (438)
T ss_pred             HHHhccccccccc--ccchHHHHHHHHH-----------------------HHHHHHHHhcccchHHHHHHHHHHHhhHH
Confidence            544 455443210  0000111111111                       12356777788888888888888877777


Q ss_pred             hchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHH
Q 016986          303 SGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLIL  371 (379)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~  371 (379)
                      +.......|....++.+..+..+......+.+++|+++.|++.||+|.|+++.++.++..+.++...+.
T Consensus       270 til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~  338 (438)
T COG2270         270 TILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL  338 (438)
T ss_pred             HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc
Confidence            777777777777778777777888888999999999999999999999999888888877777665543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.45  E-value=4.6e-12  Score=114.03  Aligned_cols=303  Identities=17%  Similarity=0.182  Sum_probs=188.1

Q ss_pred             HHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHH----HHHHHHHHHhHHhhhccchhHHHHHHHhHH
Q 016986           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMC----LGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (379)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~----~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~  127 (379)
                      .....++-.+..++.........+.....++.+....+ +......    .+...+.++..|.++||+|||..+....+.
T Consensus        23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~-~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~  101 (463)
T KOG2816|consen   23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLEN-GLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFG  101 (463)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchh-hhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHH
Confidence            34444455555555555555666666666655433332 3444444    567789999999999999999999999998


Q ss_pred             HHHHHHHHhcccchHHHHHHHHHHHhh--hchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch
Q 016986          128 MIIGASISATTRNLIGMLLGRFVVGTG--MGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (379)
Q Consensus       128 ~~~~~~~~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (379)
                      ..+..+...+.. +| +.+   +.|+.  .+.......++++|....++|...+++.+.....+..++|.+++.+.+..+
T Consensus       102 ~~l~~~~~~~~~-~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~  176 (463)
T KOG2816|consen  102 TILPALCLLFQG-YW-FFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG  176 (463)
T ss_pred             HHHhHHHHHHHH-HH-Hhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence            888877776666 33 333   44433  334556678999999999999999999999999999999999999998877


Q ss_pred             hhHHHHHHHHHHHHHHHHH-HhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcc
Q 016986          206 WWRICFWVSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYG  284 (379)
Q Consensus       206 ~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (379)
                       .-..|.++.+..++..+. .+++||+.+.    ++.++  ..............          .........+..-.+
T Consensus       177 -~a~~f~ia~~~~~~~~~y~~~~l~Esl~~----~~~~~--~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~  239 (463)
T KOG2816|consen  177 -IALVFLIAAASGILSLLYMLLFLPESLQE----KERSD--ATLRELTPGSLDSS----------HVADAFQSLTKVGPD  239 (463)
T ss_pred             -chHHHHHHHHHHHHHHHHHhhccccccCc----ccccc--ccccccCCCcccch----------hhhhhhhhhcccCCC
Confidence             678888877777776654 4568887321    11110  00000000000000          000000011111112


Q ss_pred             cchhHHHHHHHHHHHHHhhchh-HHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH-HHHHhhCchHHHHHHHHHHH
Q 016986          285 RHFRVVFIGSTLFALQQLSGIN-AIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAM-VLMDKLGRKALLQWSFFSMV  362 (379)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~g~~~~~~~~~~~~~  362 (379)
                      |....+....++.......... ...+|+...++....+.+......++...++.++.. .+...++.|+.+..|...-.
T Consensus       240 r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~  319 (463)
T KOG2816|consen  240 RLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEF  319 (463)
T ss_pred             ccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHH
Confidence            2222222222222222221111 334555555565555666666777777778877666 67777888888889999999


Q ss_pred             HHHHHHHHHHHhhhh
Q 016986          363 ICSSISLILEAFLVL  377 (379)
Q Consensus       363 i~~~~~~~~~~~~~~  377 (379)
                      +......+.+..|..
T Consensus       320 ~~~~~~af~~~~w~~  334 (463)
T KOG2816|consen  320 LQLLLFAFATETWMM  334 (463)
T ss_pred             HHHHHHHHhccchhh
Confidence            988888888777654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.44  E-value=4.7e-12  Score=115.20  Aligned_cols=180  Identities=16%  Similarity=0.160  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHHHHHhhhh-ccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhH--HHHHHHhH
Q 016986           50 FPHVLVATLSSFLFGYHL-GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR--RAFQLCAL  126 (379)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr--~~l~~~~~  126 (379)
                      .+.+....++.++..-.. ++.......-.+++|++..+.  ..+.-+..+...+|++++|++.||+|.|  ++++++++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l--~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~  357 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQL--IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLI  357 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            344444445544433333 333334444566899988776  5677777888899999999999999999  99999988


Q ss_pred             HHHHHHHHHhc--------ccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcc
Q 016986          127 PMIIGASISAT--------TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI  198 (379)
Q Consensus       127 ~~~~~~~~~~~--------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  198 (379)
                      .+.+..+...+        .++.+.+.+.-++.|+..|..++...++.+|..|+++.+..+|++....-....+||++-+
T Consensus       358 ~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g  437 (477)
T PF11700_consen  358 LWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFG  437 (477)
T ss_pred             HHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            88776666555        6788889999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 016986          199 PVKEIAGWWRICFWVSIVPAAILCLAMVFCAES  231 (379)
Q Consensus       199 ~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~  231 (379)
                      .+.+..+.-|+.+....++.++.++++++++.+
T Consensus       438 ~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~  470 (477)
T PF11700_consen  438 LITDATGSQRYGFLFLLVLFLIGLILLFFVDVE  470 (477)
T ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHHHhhccch
Confidence            999887767888888777777777777666654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.42  E-value=8.8e-12  Score=114.47  Aligned_cols=154  Identities=18%  Similarity=0.152  Sum_probs=104.6

Q ss_pred             ccchhhhhhh-hccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccc--hhHHHH-HHHhHHHHHHHHHHh--cccchHH
Q 016986           70 VNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--GRRRAF-QLCALPMIIGASISA--TTRNLIG  143 (379)
Q Consensus        70 ~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~--Grr~~l-~~~~~~~~~~~~~~~--~~~~~~~  143 (379)
                      ....+|.+.+ +.|.+.++.  ++....+.++..++.++.|+++||+  |||+.. +....+..++.+...  ...+...
T Consensus       272 ~~~~~P~~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  349 (452)
T PRK11273        272 ILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTV  349 (452)
T ss_pred             HHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHH
Confidence            3456676655 468876665  7888888899999999999999999  555432 222233333332222  2334544


Q ss_pred             HHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHH-HHHhhcccccccchhhHHHHHHHHHHHHHHH
Q 016986          144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLM-GSLLIGIPVKEIAGWWRICFWVSIVPAAILC  222 (379)
Q Consensus       144 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~  222 (379)
                      .+++.++.|.+..........+..|.+|+++||++.|+.+....+|.. ++|.+.+.+.++.| |+..|++.+..+++.+
T Consensus       350 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~~~~  428 (452)
T PRK11273        350 DMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAV  428 (452)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHHHHH
Confidence            555555555543333333345678999999999999999888777754 57999999999888 8999988776666655


Q ss_pred             HHHh
Q 016986          223 LAMV  226 (379)
Q Consensus       223 ~~~~  226 (379)
                      +...
T Consensus       429 ~~~~  432 (452)
T PRK11273        429 ILLI  432 (452)
T ss_pred             HHHH
Confidence            5443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.41  E-value=4.7e-12  Score=114.38  Aligned_cols=133  Identities=13%  Similarity=0.052  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhc
Q 016986           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS  170 (379)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  170 (379)
                      |.+.++..+...++.+..|++.||+|||+.+.++.++.++...+...++|.+.+++.+++.|++..........+..+..
T Consensus       257 g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  336 (396)
T TIGR00882       257 GYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQF  336 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            78888888888999999999999999999999999998888888788899999999999999988777667777888888


Q ss_pred             CCCcchhHHHH-HHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Q 016986          171 PPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (379)
Q Consensus       171 ~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~  224 (379)
                      +++.++...+. ++....+|..+++.++|.+.+..| |+..|.+.++..++..++
T Consensus       337 ~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       337 DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHHH
Confidence            88888887766 678899999999999999999888 899999877776655444

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.41  E-value=1.3e-10  Score=101.63  Aligned_cols=313  Identities=12%  Similarity=0.065  Sum_probs=193.4

Q ss_pred             HHHHHHHHHHhhhhccccchhhhhhhh-ccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHH
Q 016986           54 LVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (379)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~  132 (379)
                      ..+++-.|+..+-.. -....|.+.+. .|++.++.. .-+.-+..-.+....++...+.|..|.|++++++.+...+..
T Consensus         8 ~llc~~gf~~~frPs-EPfl~~yL~~~~kn~T~~qv~-~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~   85 (412)
T PF01770_consen    8 LLLCLFGFFKEFRPS-EPFLTPYLTGPDKNFTEEQVN-NEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITW   85 (412)
T ss_pred             HHHHHHHHHHhcCCC-CccchHHHcCCccCCCHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            334444444433322 23344555554 788877765 455666666778888999999999999999999999999999


Q ss_pred             HHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch-hhHHHH
Q 016986          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRICF  211 (379)
Q Consensus       133 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~wr~~f  211 (379)
                      .+.-+.++...+-+..++-|++.+. ..+..+|+-...|+++-.++.+...++.-+|..++.++|..+....+ ..+...
T Consensus        86 ~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~  164 (412)
T PF01770_consen   86 LLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLN  164 (412)
T ss_pred             HHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            9999999999999999999997765 56777899888899988999999999999998888888887776332 156676


Q ss_pred             HHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHH----HHHHHhCCCchhHHHHHHHhhhcCCC--------CCcchhh
Q 016986          212 WVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEA----EFEKLLGGSHVKSSLAELSKLDRGDD--------GDIVKFE  279 (379)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~  279 (379)
                      ++......+.++..+++|..++-..-+++..+...    ..++.....+..   .+..+.++...        .-..+++
T Consensus       165 ~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~~~~~  241 (412)
T PF01770_consen  165 YISLASVSLALLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESS---SSTEKSPSTESSSRKSVLRLLWKDFK  241 (412)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcccceeccCccccccccccccccccccccc---cccccCcccccchHHHHHHHHHHHHH
Confidence            77666666666667778876542222222111000    000000000000   00000000000        0122345


Q ss_pred             hhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHc------CCChhHHHHHHHHHHHHHHHHHHHHHHhhCchH-
Q 016986          280 ELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA------GLSSGLANVFVGIANLLGSVVAMVLMDKLGRKA-  352 (379)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-  352 (379)
                      +..+++......+.-.+..+.    ......|.+...+..      ..-.|.+-+...+.+.++.+..|++..++.+.. 
T Consensus       242 ~~y~~~~ll~WSlWWa~atcg----y~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~  317 (412)
T PF01770_consen  242 SCYSNPRLLLWSLWWAFATCG----YYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGE  317 (412)
T ss_pred             HHhcCchHHHHHHHHHHHHhH----HHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHH
Confidence            556677665544433333333    333444555444443      112457777788888888999999866666543 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHhhh
Q 016986          353 -LLQWSFFSMVICSSISLILEAFLV  376 (379)
Q Consensus       353 -~~~~~~~~~~i~~~~~~~~~~~~~  376 (379)
                       .+....++.+...+++...++.|.
T Consensus       318 l~l~~~S~l~a~~L~lm~~t~~Iwv  342 (412)
T PF01770_consen  318 LALGVFSLLQAGLLFLMSFTGNIWV  342 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence             333444555555666666655553

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.40  E-value=1.9e-12  Score=115.56  Aligned_cols=131  Identities=15%  Similarity=0.128  Sum_probs=115.1

Q ss_pred             chhhhhhhh-ccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccc-hHHHHHHHH
Q 016986           72 EPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRN-LIGMLLGRF  149 (379)
Q Consensus        72 ~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~l~~~r~  149 (379)
                      ...|.+.++ +|.+..+.  +++.+...++..++.++.+++.||+|||+.+..+..+.+++.++..+.++ .+.+++..+
T Consensus       232 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHY--GWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWF  309 (365)
T ss_pred             HHhHHHHHHHhCCchHHH--HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence            455666655 78776665  89999999999999999999999999999999888888888888887774 888888999


Q ss_pred             HHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccc
Q 016986          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (379)
Q Consensus       150 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  204 (379)
                      +.|++.+...+...+++.|..|+++|+++.++.+....+|..+++.+++.+.+..
T Consensus       310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999887653

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.39  E-value=9.7e-12  Score=113.58  Aligned_cols=163  Identities=22%  Similarity=0.160  Sum_probs=109.2

Q ss_pred             HHHHhhhhccccchhhhhh-hhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccc--h-hHHHHHH---HhHHHHHHH
Q 016986           60 SFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--G-RRRAFQL---CALPMIIGA  132 (379)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~--G-rr~~l~~---~~~~~~~~~  132 (379)
                      .+........+...+|.+. +++|.+..+.  ++..+.+.++..++.++.|+++||+  + ||+....   +.+...+..
T Consensus       252 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~  329 (434)
T PRK11663        252 YVLVYVVRAAINDWGNLYMSETLGVDLVTA--NSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSL  329 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCHHHH--HHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHH
Confidence            3333333334445566555 6678877666  7889999999999999999999999  3 3332222   222222222


Q ss_pred             HHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Q 016986          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (379)
Q Consensus       133 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~  212 (379)
                      .... ..+...+.+..+..|++.............|.+|+++|++++|+.+....+|..++|.+.+.+.+..| |+..|+
T Consensus       330 ~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g-~~~~f~  407 (434)
T PRK11663        330 WLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH-WTGFFV  407 (434)
T ss_pred             HHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc-cHHHHH
Confidence            2222 23333333444445543332233344677899999999999999999999999999999999999888 999998


Q ss_pred             HHHHHHHHHHHHHh
Q 016986          213 VSIVPAAILCLAMV  226 (379)
Q Consensus       213 ~~~~~~~~~~~~~~  226 (379)
                      +.++..++..+...
T Consensus       408 ~~~~~~~~~~~~~~  421 (434)
T PRK11663        408 VISIAAGISALLLL  421 (434)
T ss_pred             HHHHHHHHHHHHHH
Confidence            87777666555443

>PRK10504 putative transporter; Provisional

Probab=99.38  E-value=1.1e-11  Score=114.58  Aligned_cols=137  Identities=12%  Similarity=0.066  Sum_probs=108.7

Q ss_pred             hccccchhhhhhh-hccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcc---cchH
Q 016986           67 LGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT---RNLI  142 (379)
Q Consensus        67 ~~~~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~---~~~~  142 (379)
                      ........|.+.+ .+|.+....  ++....+.++..++.++.|++.||+|||+++..+..+.++..++..+.   ++.+
T Consensus       277 ~~~~~~~~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (471)
T PRK10504        277 SGMLPFMTPVFLQIGLGFSPFHA--GLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYY  354 (471)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHH
Confidence            3334445666555 467665555  788888888888888999999999999999999988888776665543   3444


Q ss_pred             HHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch
Q 016986          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (379)
Q Consensus       143 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (379)
                      .+.+..++.|++.+...+....+..+..|+++|+.+.++.+....+|..+|+.+++.+.+..+
T Consensus       355 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        355 LLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455567888898888888889999999999999999999999999999999999887766544

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.38  E-value=1.7e-10  Score=106.81  Aligned_cols=155  Identities=17%  Similarity=0.229  Sum_probs=118.7

Q ss_pred             hhhhhhhccCCcchhHHHHHHH-HHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHH---Hhcc-cchHHHHHHH
Q 016986           74 LESISLDLGFNGNTLAEGLVVS-MCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATT-RNLIGMLLGR  148 (379)
Q Consensus        74 ~~~i~~~~~~~~~~~~~~~~~s-~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~---~~~~-~~~~~l~~~r  148 (379)
                      .|.+.+++|.+.++.  ++... ...++..++.++.|+++||+|+|+.+.++.++.++..+.   .+.. ++...+.+.-
T Consensus       246 ~~~l~~~~G~s~~~~--g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~  323 (491)
T PRK11010        246 TTFLIRGVGFDAGEV--GLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAV  323 (491)
T ss_pred             HHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            344556788887776  78764 556789999999999999999998887766655544332   2333 4555555566


Q ss_pred             HHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhhc
Q 016986          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC  228 (379)
Q Consensus       149 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~  228 (379)
                      +++.++.|...+...++..+..+++.+++..++.+....+|..+++.+.|.+.+..| |+..|.+.++.+++.++...++
T Consensus       324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666667778899999999999999999999999998888888999998888 9999998888887776666555


Q ss_pred             CCC
Q 016986          229 AES  231 (379)
Q Consensus       229 ~e~  231 (379)
                      +++
T Consensus       403 ~~~  405 (491)
T PRK11010        403 RQT  405 (491)
T ss_pred             Hhc
Confidence            543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.38  E-value=1.1e-11  Score=114.10  Aligned_cols=152  Identities=18%  Similarity=0.169  Sum_probs=132.7

Q ss_pred             cchhhhhh-hhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHH
Q 016986           71 NEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (379)
Q Consensus        71 ~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  149 (379)
                      ...+|.+. +++|.+....  |++.+++.+|..+++++.+++.+|+++++++..+.+.++++.+..+++++.+..++.-+
T Consensus       238 ~aLlPl~a~~~l~~~a~~y--Gll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~  315 (524)
T PF05977_consen  238 WALLPLFARDVLGGGASGY--GLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALF  315 (524)
T ss_pred             HHhhhHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            44567665 4577765555  99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHH
Q 016986          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (379)
Q Consensus       150 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~  225 (379)
                      +.|++.....+...+.+.+..|++.|||.++++++....+..+|..+.|.+.+..| -+..+.++++..++..++.
T Consensus       316 l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  316 LAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHH
Confidence            99999998888889999999999999999999999999999999999999999888 6888877666554444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.37  E-value=1.2e-11  Score=113.25  Aligned_cols=115  Identities=19%  Similarity=0.146  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcc-cchHHHHHHHHHHHhhhchhhHHHHHHHHhh
Q 016986           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-RNLIGMLLGRFVVGTGMGLGPTVAALYVTEV  169 (379)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~  169 (379)
                      +++.++..++..++.+++++++||+|+|+++..+.++.+++.++..+. ++.+.+++..++.|++.+...+...++++|.
T Consensus       260 ~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (437)
T TIGR00792       260 SYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADT  339 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            677788889999999999999999999999999998888887776665 4666777788899999999999999999988


Q ss_pred             cC-------CCcchhHHHHHHHHHHHHHHHHHhhcccccccch
Q 016986          170 SP-------PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (379)
Q Consensus       170 ~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (379)
                      .+       ++++|.+.++.+....+|..+++.+.+.+.+..|
T Consensus       340 ~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       340 VDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             hhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            65       4567999999999999999999999888766544

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.37  E-value=1.1e-11  Score=113.53  Aligned_cols=177  Identities=16%  Similarity=0.186  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccch--hHHHHHHHhHHH
Q 016986           51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG--RRRAFQLCALPM  128 (379)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~G--rr~~l~~~~~~~  128 (379)
                      +.++.......+...........+|.+.++.+.+.++.  +.+.++..+...++.++.|+++|+..  ++.+..++++..
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~a--a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDA--AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhh--HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHH
Confidence            34555666666666677777778999999999987777  89999999999999999999999988  667777888889


Q ss_pred             HHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhH
Q 016986          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (379)
Q Consensus       129 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr  208 (379)
                      +++.+.+.++++++.++..-.+.|++.|.........+.|..+.++-..+.|+.....+++.++||.+.+.+.+..+.|.
T Consensus       376 gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~  455 (509)
T KOG2504|consen  376 GLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYD  455 (509)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCee
Confidence            99999999999999999999999999999999888999999999999999999999999999999999999998888789


Q ss_pred             HHHHHHHHHHHHHHHHHhhcC
Q 016986          209 ICFWVSIVPAAILCLAMVFCA  229 (379)
Q Consensus       209 ~~f~~~~~~~~~~~~~~~~~~  229 (379)
                      ..|+..++..++..+.+++.+
T Consensus       456 ~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  456 HAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eehhhcChHHHHHHHHHHHhH
Confidence            999998888777776666555

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.37  E-value=8e-12  Score=114.06  Aligned_cols=137  Identities=15%  Similarity=0.088  Sum_probs=100.8

Q ss_pred             cchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHH
Q 016986           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV  150 (379)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  150 (379)
                      ...+|.+.++.|.+.+..  +...+.+.++..++.++.|++.||+|||+.+..+.++..+..+.....++.....+.-++
T Consensus       251 ~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (426)
T PRK12307        251 FGLLPTYLAGEGFDTGVV--SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACL  328 (426)
T ss_pred             HHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence            345676767778765555  788888899999999999999999999999998887776665544433221112222233


Q ss_pred             HHh--hhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Q 016986          151 VGT--GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC  210 (379)
Q Consensus       151 ~G~--~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~  210 (379)
                      .|+  +.....+....++.|.+|+++|++++|+......+|..++|.+.+.+.+..+ +...
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~~~  389 (426)
T PRK12307        329 FGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LGAA  389 (426)
T ss_pred             HHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HHHH
Confidence            333  2233345566788999999999999999999999999999999999988777 4443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.36  E-value=2.4e-11  Score=111.08  Aligned_cols=137  Identities=18%  Similarity=0.105  Sum_probs=98.6

Q ss_pred             hccccchhhhhhhh-ccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHH-H---Hhcccch
Q 016986           67 LGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS-I---SATTRNL  141 (379)
Q Consensus        67 ~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~-~---~~~~~~~  141 (379)
                      ...+....|.+.++ +|.+.++.  ++....+.++..++.++.|+++||+|||++++.+.++..+... .   ....+++
T Consensus       254 ~~~~~~~~p~~l~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (434)
T PRK15075        254 FYLITVYTPTFGKTVLHLSAADS--LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSF  331 (434)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence            33445556766554 78876665  7788888899999999999999999999998876554433221 1   1123444


Q ss_pred             HHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHH-HHHHHHHHHHHhhcccccccch
Q 016986          142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAG  205 (379)
Q Consensus       142 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~  205 (379)
                      ..+.+..++.|++.+...+....++.|.+|+++|+.+.++.. .+..++..++|.+.+.+.+..+
T Consensus       332 ~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        332 ARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence            445555666677777777777788999999999999999854 4444556778999888888776

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.34  E-value=2.8e-11  Score=109.09  Aligned_cols=148  Identities=15%  Similarity=0.015  Sum_probs=111.6

Q ss_pred             hhhhhhhhccCCcchhHHHHHHHHHH-HHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhc------ccchHHHH
Q 016986           73 PLESISLDLGFNGNTLAEGLVVSMCL-GGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT------TRNLIGML  145 (379)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~-~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~l~  145 (379)
                      ..+.+.+|.|.+.++.  |++..... ....++.++.|++.||+|+|+.+..+..+.++..+....      .++...+.
T Consensus       230 ~~~~~l~~~G~s~~~i--g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (390)
T TIGR02718       230 LSKLYLVDAGWPLEWI--GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAW  307 (390)
T ss_pred             HhhHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHH
Confidence            4455566789887776  88877765 456677899999999999999998877665333322211      23344445


Q ss_pred             HHHHHHHhhhchhhHHHHHHHHhhcCC-CcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Q 016986          146 LGRFVVGTGMGLGPTVAALYVTEVSPP-FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (379)
Q Consensus       146 ~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~  223 (379)
                      ....+.+++.+...+.......+..++ +++++.+++.+...++|..++|.++|.+.+..| |+..|++.++..++..+
T Consensus       308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       308 SCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHH
Confidence            556666777777777777887787776 889999999999999999999999999998888 89999887766655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.34  E-value=5.2e-11  Score=97.96  Aligned_cols=176  Identities=15%  Similarity=0.115  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHH
Q 016986           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (379)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~  129 (379)
                      |..+..........+ ....++.+-|++++.+|.+.++.  ..+.++-.+|..+ +++.|.+.|++|+|.++.+|.+...
T Consensus         2 W~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l--~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~   77 (250)
T PF06813_consen    2 WLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQL--NTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGF   77 (250)
T ss_pred             hhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHH--HHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHH
Confidence            444444444443333 44456788899999999988877  7888888999876 5889999999999999999999999


Q ss_pred             HHHHHHhcc-------cchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccc
Q 016986          130 IGASISATT-------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (379)
Q Consensus       130 ~~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  202 (379)
                      +|..+...+       .++|.+.+..++.|.+.+...+.......+.|| ++||.+.|+.-...+++..+-..+...+.+
T Consensus        78 ~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen   78 VGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             HHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence            988775532       467788888888888877777777777888998 579999999999999987666555554444


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 016986          203 IAGWWRICFWVSIVPAAILCLAMVFCAES  231 (379)
Q Consensus       203 ~~~~wr~~f~~~~~~~~~~~~~~~~~~e~  231 (379)
                      ... -+..+..+..+.++.++..+++++.
T Consensus       157 ~~~-~~fll~la~~~~~v~l~~~~~vr~~  184 (250)
T PF06813_consen  157 DDP-SSFLLFLAVLPAVVCLVAMFFVRPV  184 (250)
T ss_pred             CCh-HHHHHHHHHHHHHHHHHHhhheecc
Confidence            443 3555555556666665555555444

>PRK10054 putative transporter; Provisional

Probab=99.33  E-value=1.9e-11  Score=110.20  Aligned_cols=132  Identities=13%  Similarity=0.045  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcc-cchHHHHHHHHHHHhhhchhhHHHHHHHHhh
Q 016986           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-RNLIGMLLGRFVVGTGMGLGPTVAALYVTEV  169 (379)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~  169 (379)
                      +++.+.+.+.....+++.|++.||+++|+.+..++.+..++.+...++ ++.+.+++..++.|+|.+...|....++.+.
T Consensus       247 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~  326 (395)
T PRK10054        247 AVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHI  326 (395)
T ss_pred             HHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            777777777777788899999999999999999988888887777664 5777777888999999988888888999999


Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Q 016986          170 SPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (379)
Q Consensus       170 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~  224 (379)
                      .|++.|+++.+..+ ...+|..+||.+++.+.++.+ ....|++.+....+..+.
T Consensus       327 ~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~  379 (395)
T PRK10054        327 APPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP-PWSLFVILALAIVAAWLL  379 (395)
T ss_pred             CCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC-hhhHHHHHHHHHHHHHHH
Confidence            99999999988765 455899999999999999888 577777755554444333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.32  E-value=5.4e-11  Score=108.66  Aligned_cols=156  Identities=12%  Similarity=0.078  Sum_probs=97.9

Q ss_pred             cchhhhh-hhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHH----hcccchHHHH
Q 016986           71 NEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS----ATTRNLIGML  145 (379)
Q Consensus        71 ~~~~~~i-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~----~~~~~~~~l~  145 (379)
                      ...+|.+ .+++|.+.++.  ++..++..++..+++++.|+++||+|||+.++.+.++.++..+..    ...++....+
T Consensus       263 ~~~lp~~l~~~~g~s~~~~--~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (432)
T PRK10406        263 TTYMQKYLVNTAGMHANVA--SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAF  340 (432)
T ss_pred             HHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            3455654 45678876555  777888778888999999999999999998877665443333211    1122333222


Q ss_pred             HHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHH-HHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Q 016986          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (379)
Q Consensus       146 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~  224 (379)
                      ..-.+.+++.+...+....++.|++|++.|+.+.|+.+....+ .....|.+.+.+.. .+.|...+++.++..++..+.
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-~g~~~~~~~~~~~~~~i~~~~  419 (432)
T PRK10406        341 GLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS-IGMETAFFWYVTLMAVVAFLV  419 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHH
Confidence            2222222333444455678899999999999999998765443 33447777775543 343666666666666665555


Q ss_pred             HhhcC
Q 016986          225 MVFCA  229 (379)
Q Consensus       225 ~~~~~  229 (379)
                      .++++
T Consensus       420 ~~~l~  424 (432)
T PRK10406        420 SLMLH  424 (432)
T ss_pred             HHHhh
Confidence            55443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.31  E-value=8.6e-11  Score=102.24  Aligned_cols=160  Identities=20%  Similarity=0.176  Sum_probs=131.6

Q ss_pred             HhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcc-cch
Q 016986           63 FGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-RNL  141 (379)
Q Consensus        63 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-~~~  141 (379)
                      ..-....+.++-|.+++..|++.+..  +++.-+|.++..++..+.|+++|| +.|+.+.....+..+..+...+. ++.
T Consensus       224 ~~g~F~~ftYi~P~L~~v~g~s~~~v--s~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~  300 (394)
T COG2814         224 MTGHFALYTYIRPFLESVAGFSVSAV--SLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASP  300 (394)
T ss_pred             HcchhhhHHhHHHHHHHccCCCHhHH--HHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchH
Confidence            33344556677888889999988777  899999999999999999999999 99999998877777777665554 555


Q ss_pred             HHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Q 016986          142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL  221 (379)
Q Consensus       142 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~  221 (379)
                      +..++.-++.|+..+.........+++ ..++.+..+.++....+++|..+|..+||.+.++.| +....+++++..++.
T Consensus       301 ~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g-~~~~~~~~a~l~~~a  378 (394)
T COG2814         301 ALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG-YAATGWVGAALLLLA  378 (394)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHH
Confidence            566666777888877777777777777 445779999999999999999999999999999988 899999988888877


Q ss_pred             HHHHhh
Q 016986          222 CLAMVF  227 (379)
Q Consensus       222 ~~~~~~  227 (379)
                      ++..+.
T Consensus       379 ~~~~~~  384 (394)
T COG2814         379 LLLALL  384 (394)
T ss_pred             HHHHHH
Confidence            766544

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.31  E-value=2.2e-11  Score=112.31  Aligned_cols=151  Identities=12%  Similarity=0.006  Sum_probs=105.5

Q ss_pred             hhh-hhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhH-------HHHHHHhHHHHHHHHHHhcccchHHHH
Q 016986           74 LES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR-------RAFQLCALPMIIGASISATTRNLIGML  145 (379)
Q Consensus        74 ~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr-------~~l~~~~~~~~~~~~~~~~~~~~~~l~  145 (379)
                      +|. +.+++|.+..+.  +.+.+++.++..++.+++|+++||+|||       ....+..++.++..++.+..++.+..+
T Consensus       275 ~p~~l~~~~g~s~~~a--~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~  352 (476)
T PLN00028        275 IAEYFYDRFGLSLETA--GAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAI  352 (476)
T ss_pred             HHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence            444 456678876666  8899999999999999999999999875       233334444444445556666666666


Q ss_pred             HHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHH
Q 016986          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (379)
Q Consensus       146 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~  225 (379)
                      +.-++.+++.+...+...+++.+..| ++|+...|+.+.+..+|..+++.+.+ .....+ |+..|++.++..++..++.
T Consensus       353 ~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~-y~~~f~~~~~~~~i~~~~~  429 (476)
T PLN00028        353 VVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYS-TETGISLMGVMIIACTLPV  429 (476)
T ss_pred             HHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCcc-HhhHHHHHHHHHHHHHHHH
Confidence            66666666665555556666667654 68999999998888888877776643 222334 8999998887777776666


Q ss_pred             hhcC
Q 016986          226 VFCA  229 (379)
Q Consensus       226 ~~~~  229 (379)
                      ++.+
T Consensus       430 ~~~~  433 (476)
T PLN00028        430 AFIH  433 (476)
T ss_pred             Hhee
Confidence            5554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.29  E-value=2.8e-11  Score=110.73  Aligned_cols=158  Identities=17%  Similarity=0.124  Sum_probs=102.6

Q ss_pred             cchhhhhhh-hccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHH---HHHHHHhc--ccchHHH
Q 016986           71 NEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI---IGASISAT--TRNLIGM  144 (379)
Q Consensus        71 ~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~---~~~~~~~~--~~~~~~l  144 (379)
                      ....|.+.+ ..|.+..+.  ++....+.++..++.++.|+++||+|+|+....+.....   ++.+....  ..+.+..
T Consensus       271 ~~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (438)
T TIGR00712       271 LDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVD  348 (438)
T ss_pred             HHhHHHHHHHccCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence            345565554 467776655  788888999999999999999999965432222322211   11121112  2234434


Q ss_pred             HHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHH-HHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Q 016986          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLG-LMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (379)
Q Consensus       145 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~  223 (379)
                      .+.-++.|++.............|.+|+++|+.+.|+.+....+| .+++|.+.+.+.++.| |...|++.+...++..+
T Consensus       349 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~~~~~~~~~~~~~~  427 (438)
T TIGR00712       349 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVI  427 (438)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-chHHHHHHHHHHHHHHH
Confidence            444455555433222222356789999999999999998777766 5789999999999888 89998876655555444


Q ss_pred             H-HhhcCCC
Q 016986          224 A-MVFCAES  231 (379)
Q Consensus       224 ~-~~~~~e~  231 (379)
                      . .++++|+
T Consensus       428 ~~~~~~~~~  436 (438)
T TIGR00712       428 LLIVVMIGE  436 (438)
T ss_pred             HHHHHHhhc
Confidence            3 4556665

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.28  E-value=7.8e-11  Score=106.82  Aligned_cols=161  Identities=17%  Similarity=0.102  Sum_probs=105.7

Q ss_pred             HHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHH-HHHHhHHHHHHHHHH
Q 016986           57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA-FQLCALPMIIGASIS  135 (379)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~-l~~~~~~~~~~~~~~  135 (379)
                      .+..++.......+...+|.+.++++...+....++..+...++..++.++.|+++||+|||+. .+...++.+++..+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~  327 (412)
T TIGR02332       248 TLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLA  327 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHH
Confidence            3333443344444556778887775432223333888999999999999999999999997764 444444444433332


Q ss_pred             hcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Q 016986          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI  215 (379)
Q Consensus       136 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~  215 (379)
                      ...++....+++-.+.++|.....+.......|.+|+++|+++.|+.+....+|.+++|.+.+.+.+..|+|++.|++.+
T Consensus       328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~  407 (412)
T TIGR02332       328 SATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVA  407 (412)
T ss_pred             HhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHH
Confidence            22333222222222333333333344445557788999999999999999999999999999999988765899887765


Q ss_pred             HH
Q 016986          216 VP  217 (379)
Q Consensus       216 ~~  217 (379)
                      +.
T Consensus       408 ~~  409 (412)
T TIGR02332       408 AL  409 (412)
T ss_pred             HH
Confidence            54

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.28  E-value=1.3e-11  Score=110.65  Aligned_cols=151  Identities=18%  Similarity=0.205  Sum_probs=104.1

Q ss_pred             HHHHHHhhhhccccchhhhh-hhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccch-hHHH-HHHHh-HHHHHHHH
Q 016986           58 LSSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-RRRA-FQLCA-LPMIIGAS  133 (379)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~G-rr~~-l~~~~-~~~~~~~~  133 (379)
                      +..+.............|.+ .+++|.+..+.  ++..+.+.++..++.++.|++.||.+ ||+. +.... ....++..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~  300 (379)
T TIGR00881       223 LGYVFVYVVRTGILDWSPLYLTQEKGFSKEKA--SWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLL  300 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence            33333333333334445544 45678876666  88899999999999999999999864 3332 22221 22222222


Q ss_pred             HHhc--ccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Q 016986          134 ISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (379)
Q Consensus       134 ~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f  211 (379)
                      ....  ..+....++..++.|+......+....+..|.+|+++|+++.++.+....+|..++|.+.+.+.+..| |++.|
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f  379 (379)
T TIGR00881       301 VYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG-WAGAF  379 (379)
T ss_pred             HHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc-ccccC
Confidence            2222  34555566667777776666666667889999999999999999999999999999999999999888 88654

>TIGR00896 CynX cyanate transporter

Probab=99.27  E-value=6.4e-11  Score=105.35  Aligned_cols=135  Identities=18%  Similarity=0.072  Sum_probs=106.1

Q ss_pred             cchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccc-hhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHH
Q 016986           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (379)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  149 (379)
                      ...+|.+.++.|.+..+.  +.+.+++.++..+++++.|++.||+ +||+.+..+.++.+++.+...+.++..... .-+
T Consensus       217 ~~~lp~~~~~~g~~~~~~--g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  293 (355)
T TIGR00896       217 IGWLPAILISHGASAATA--GSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WAL  293 (355)
T ss_pred             HHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHH
Confidence            445677777788876665  8999999999999999999999999 567777778888877777666665433322 456


Q ss_pred             HHHhhhchhhHHHHHHHHhhcC-CCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhH
Q 016986          150 VVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (379)
Q Consensus       150 l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr  208 (379)
                      +.|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+.++.+.|.
T Consensus       294 l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       294 VLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            7899999998887777776555 4667888999888888899999999999988776454

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.26  E-value=2.3e-10  Score=102.27  Aligned_cols=173  Identities=19%  Similarity=0.239  Sum_probs=130.2

Q ss_pred             HHHHHHHHhhhhccccchhhhhhhhcc-CCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHH
Q 016986           56 ATLSSFLFGYHLGVVNEPLESISLDLG-FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (379)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~  134 (379)
                      ..+..++.+........+.+...++.| .+.+..  +.+.++..++-.+.-...+++..|+|.|+++.++.+.+++=..+
T Consensus       212 Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~--g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l  289 (400)
T PF03825_consen  212 FLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTI--GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLL  289 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            334444555555555666677777777 444444  66667777788889999999999999999999999999998888


Q ss_pred             Hhcc-cchHHHHHH----HHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHH-HHHHHHHHHHhhcccccccchh--
Q 016986          135 SATT-RNLIGMLLG----RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQI-ATCLGLMGSLLIGIPVKEIAGW--  206 (379)
Q Consensus       135 ~~~~-~~~~~l~~~----r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~~~--  206 (379)
                      .+.. ++.+...+.    ..++|+..+........++.+..|++.|+++.++++. ..++|..+|..++|++.+..+.  
T Consensus       290 ~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~  369 (400)
T PF03825_consen  290 YAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG  369 (400)
T ss_pred             HHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh
Confidence            8777 555544333    4569999999999999999999999999999999875 5789999999999999987652  


Q ss_pred             ---hHHHHHHHHHHHHHHHHHH-hhcCC
Q 016986          207 ---WRICFWVSIVPAAILCLAM-VFCAE  230 (379)
Q Consensus       207 ---wr~~f~~~~~~~~~~~~~~-~~~~e  230 (379)
                         |...+.+.+...++..+++ ++++|
T Consensus       370 ~~~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  370 MFDWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence               4455556555555554444 33444

>TIGR01272 gluP glucose/galactose transporter

Probab=99.26  E-value=2.7e-10  Score=98.77  Aligned_cols=157  Identities=12%  Similarity=0.116  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHhhhhccccchhhhhhh---hccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHH
Q 016986           52 HVLVATLSSFLFGYHLGVVNEPLESISL---DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (379)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  128 (379)
                      ...+..++.++........+...+.+.+   .+|++.++.  ++..+.+..+..++.+..+++.||+|+|+++.++..+.
T Consensus       141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a--~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~  218 (310)
T TIGR01272       141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQA--AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLA  218 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            3333444444444333333444454443   357776666  88999999999999999999999999999998888888


Q ss_pred             HHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhH
Q 016986          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (379)
Q Consensus       129 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr  208 (379)
                      .++.++....++... ...-++.|++.+..+|...+...+..|++ .+.+.++. ....+|.++.|.+.|.+.+..+ .+
T Consensus       219 ~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~~  294 (310)
T TIGR01272       219 VLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-IQ  294 (310)
T ss_pred             HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-ch
Confidence            887766666555433 34556889999999999999999988754 45666775 4556888999999999988877 68


Q ss_pred             HHHHHH
Q 016986          209 ICFWVS  214 (379)
Q Consensus       209 ~~f~~~  214 (379)
                      ..|++.
T Consensus       295 ~a~~v~  300 (310)
T TIGR01272       295 LAFALP  300 (310)
T ss_pred             HHHHHH
Confidence            887643

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.25  E-value=3.9e-10  Score=101.60  Aligned_cols=144  Identities=15%  Similarity=0.019  Sum_probs=113.6

Q ss_pred             hhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHh
Q 016986           74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGT  153 (379)
Q Consensus        74 ~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~  153 (379)
                      .|.+.+++|.+.++.  +++.+.+.++..++.++.+++.||.+++.......+......++....++.+.+.+..++.|+
T Consensus       240 ~p~~~~~~g~s~~~~--g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~  317 (394)
T PRK10213        240 RPVYMNLAGFGVDGL--TLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGL  317 (394)
T ss_pred             HHHHHHhcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            466777888887666  888999999999999999999999655444443433344444555566778888888999999


Q ss_pred             hhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Q 016986          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL  221 (379)
Q Consensus       154 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~  221 (379)
                      +.+...+...+++.+..| +++++..++......+|..+|+.++|.+.+..| ++..+...+...++.
T Consensus       318 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g-~~~~~~~~~~~~~~~  383 (394)
T PRK10213        318 TFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG-LTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhhHHHHHHHHHHHH
Confidence            999999988889999887 557788888888889999999999999999888 788887766554443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.25  E-value=7.1e-11  Score=101.85  Aligned_cols=153  Identities=16%  Similarity=0.180  Sum_probs=132.9

Q ss_pred             hhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhc
Q 016986           77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG  156 (379)
Q Consensus        77 i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  156 (379)
                      -.+++|++..+.  .++.-...+..+++++++|+|.||+|.|+++..++++..+.++..-+...-..+.++-.+.|...|
T Consensus       279 g~~~~gls~~~l--ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G  356 (438)
T COG2270         279 GAADLGLSSTEL--LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLG  356 (438)
T ss_pred             HHHHcCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcc
Confidence            345899987777  678888888999999999999999999999999999999999888877777777778899999999


Q ss_pred             hhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 016986          157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES  231 (379)
Q Consensus       157 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~  231 (379)
                      +.+..+.++.++..|+++-++.+|+++...-.+..+||.+-+.+.+..+.-|..+....++..+.+++.+.+|++
T Consensus       357 ~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         357 GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            999999999999999999999999999999999999999999988877766877777666666666666666654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.24  E-value=2.3e-10  Score=102.79  Aligned_cols=148  Identities=12%  Similarity=0.063  Sum_probs=106.6

Q ss_pred             hhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHh-cccchHHHHHHHHHHH
Q 016986           74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA-TTRNLIGMLLGRFVVG  152 (379)
Q Consensus        74 ~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~-~~~~~~~l~~~r~l~G  152 (379)
                      .|.+.+.+|.+.++.  ++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++.. ..++.+...+..++.+
T Consensus       223 ~~~~~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  300 (382)
T PRK10091        223 KPYMMFISGFSETSM--TFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICC  300 (382)
T ss_pred             HHHHHHhcCCCHHHH--HHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            455666678877666  8999999999999999999999999999999988888887776554 3455555666666666


Q ss_pred             hhhchhhHHHHH-HHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHH
Q 016986          153 TGMGLGPTVAAL-YVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (379)
Q Consensus       153 ~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~  225 (379)
                      ++.....+.... ...+..+++.++.+  ..+....+|..+||.+++.+.+..++|++.+.+.++...+.+...
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  372 (382)
T PRK10091        301 AGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL  372 (382)
T ss_pred             HHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence            665544444333 33444444445444  346778899999999999998864338999998776665554443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.23  E-value=5.7e-10  Score=101.18  Aligned_cols=144  Identities=13%  Similarity=0.115  Sum_probs=110.0

Q ss_pred             hhhh-hhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcc-----cchHHHHHH
Q 016986           74 LESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-----RNLIGMLLG  147 (379)
Q Consensus        74 ~~~i-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~  147 (379)
                      .|.+ .+++|.+..+.  ++......++..++.++.|+++||+|+|+.+..+.++..++.++.++.     ++.+.+++.
T Consensus       238 ~p~~~~~~~g~~~~~~--g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  315 (406)
T PRK15402        238 SPVILISGEQLSSYEY--GLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAG  315 (406)
T ss_pred             hHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence            3443 56678776555  777777778888999999999999999999999888777776665543     356677788


Q ss_pred             HHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Q 016986          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL  221 (379)
Q Consensus       148 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~  221 (379)
                      -++.|++.+...+......... ++++||+..++.+....+|..+|+.+++.+.+..+ |....+..++.+++.
T Consensus       316 ~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~  387 (406)
T PRK15402        316 LSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG-NGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc-hHHHHHHHHHHHHHH
Confidence            8999999888777665555443 45889999999999999999999999999988877 454444444444444

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.23  E-value=2.4e-10  Score=103.26  Aligned_cols=151  Identities=11%  Similarity=-0.001  Sum_probs=114.6

Q ss_pred             chhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhc-cchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHH
Q 016986           72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-GVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV  150 (379)
Q Consensus        72 ~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d-~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  150 (379)
                      ..+|.+.++.+.+..+.  +++.++..++...+..+.+++.| |++.|+.+..+.++.+++.++.+++++++.+.+..++
T Consensus       229 ~~~p~~~~~~~~~~~~~--g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l  306 (400)
T PRK11646        229 LMLPIMVNDIAGSPSAV--KWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICL  306 (400)
T ss_pred             HhhhhhHHhhcCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            35666666654444444  78877777766666666676665 5676777788888888888888888888888888888


Q ss_pred             HHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch---hhHHHHHHHHHHHHHHHHH
Q 016986          151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG---WWRICFWVSIVPAAILCLA  224 (379)
Q Consensus       151 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~---~wr~~f~~~~~~~~~~~~~  224 (379)
                      .|++.+...|...+++.|..|+++||+++++.+....+|..+||.+++.+.++.+   .-...++..++..++..+.
T Consensus       307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            9998888888889999999999999999999999999999999999999987642   1244555544554444443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.21  E-value=1.7e-10  Score=101.53  Aligned_cols=141  Identities=15%  Similarity=0.086  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhh
Q 016986           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV  169 (379)
Q Consensus        90 ~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~  169 (379)
                      .|.+.++.-+.-++...+..++.+|+|.|+.++++.+++++=-++++++++.+.+.+.+.+.|+-.+........|+++.
T Consensus       261 ~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~  340 (412)
T PF01306_consen  261 YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAH  340 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcchhHHHH-HHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH-HhhcCCC
Q 016986          170 SPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA-MVFCAES  231 (379)
Q Consensus       170 ~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~  231 (379)
                      +|+|..++...+ .+.+..+|..+.+.++|.+.++.| .+..|++.+.+.++..++ .+.++++
T Consensus       341 fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  341 FDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             S-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHHheeeecCC
Confidence            999887777777 468889999999999999999998 788888866666555444 4445544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.21  E-value=2.2e-10  Score=105.73  Aligned_cols=174  Identities=13%  Similarity=0.064  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHhhhhccccchhhhh-hhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHH--------HH
Q 016986           52 HVLVATLSSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA--------FQ  122 (379)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~--------l~  122 (379)
                      .+....+..+............+|.+ .+++|.+..+.  +++.++..++..++.++.|+++||+++|+.        +.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~  339 (465)
T TIGR00894       262 PVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKEN--GLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIF  339 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            34444454455544444445566665 45578876666  899999999999999999999999875521        11


Q ss_pred             HHhHH--HHHHHHHHhc-ccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccc
Q 016986          123 LCALP--MIIGASISAT-TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (379)
Q Consensus       123 ~~~~~--~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  199 (379)
                      .+...  ..+..+.... ..+....+++-.+.+.+.+...+.......|..|+ .+|.+.++.+....+|..++|.+.+.
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~  418 (465)
T TIGR00894       340 NGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGN  418 (465)
T ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            11111  1111212222 33444444444555555555555555555677764 79999999999999999999999998


Q ss_pred             ccccc--hhhHHHHHHHHHHHHHHHHHHhhc
Q 016986          200 VKEIA--GWWRICFWVSIVPAAILCLAMVFC  228 (379)
Q Consensus       200 l~~~~--~~wr~~f~~~~~~~~~~~~~~~~~  228 (379)
                      +.+..  +.|+..|.+.++..++..+...++
T Consensus       419 ~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       419 ILSQDSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             eeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            87653  348899988877777766555443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.20  E-value=1.1e-09  Score=89.15  Aligned_cols=159  Identities=17%  Similarity=0.096  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHH
Q 016986           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (379)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~  129 (379)
                      ...+.+++..+....+....+++.  ..++.+|+|....  +.+.+....-.++.+++.|.++|++|++...+.+..+..
T Consensus       266 fw~~~iicv~yyva~fPFi~lg~~--fF~~rfGlS~~~a--~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~t  341 (459)
T KOG4686|consen  266 FWVLVIICVLYYVAWFPFITLGPM--FFQKRFGLSAVSA--GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILT  341 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHH--HHHHhhCCChhhc--cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHH
Confidence            344445555555544444333333  3678999987776  677777777788999999999999999988887655544


Q ss_pred             HH-HHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchh--
Q 016986          130 IG-ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW--  206 (379)
Q Consensus       130 ~~-~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~--  206 (379)
                      +. -.+..+  +++.-.++-.+.|+..+.........++...|+++.|++.+..+...++|..+.|++.+.+.+..|+  
T Consensus       342 l~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~  419 (459)
T KOG4686|consen  342 LLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYD  419 (459)
T ss_pred             HHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchh
Confidence            43 222222  2333345567788877777777788899999999999999999999999999999999999988764  


Q ss_pred             hHHHHHHH
Q 016986          207 WRICFWVS  214 (379)
Q Consensus       207 wr~~f~~~  214 (379)
                      |--.|.+.
T Consensus       420 ~le~ffl~  427 (459)
T KOG4686|consen  420 NLEAFFLI  427 (459)
T ss_pred             hHHHHHHH
Confidence            44444443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.20  E-value=2.2e-10  Score=98.75  Aligned_cols=172  Identities=19%  Similarity=0.177  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHHhhhhccccchhhhh-hhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccc--hhHHHH-HHHhH
Q 016986           51 PHVLVATLSSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--GRRRAF-QLCAL  126 (379)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~--Grr~~l-~~~~~  126 (379)
                      +.+..+++++++.+..+..+.--.|.+ .|.-|.+..+.  ++..+.|-++...+.+++|+++||+  |||... ++.++
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a--~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~  329 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKA--NWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFML  329 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHH--HHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHH
Confidence            456677788888877777666666644 55667776666  7999999999999999999999985  676544 44455


Q ss_pred             HHHHHHHHHhccc--chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHH-HHHHHHhhccccccc
Q 016986          127 PMIIGASISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEI  203 (379)
Q Consensus       127 ~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~  203 (379)
                      ...++.+..-.++  |+....++-+..|+..-+-.-+.-....|..|++--|.+.|+.+.+..+ |...+....+.+.+.
T Consensus       330 ~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~  409 (448)
T COG2271         330 LITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT  409 (448)
T ss_pred             HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec
Confidence            5555555555554  4577778888999887666667777888999999999999999998888 899999999999888


Q ss_pred             chhhHHHHHHHHHHHHHHHHHH
Q 016986          204 AGWWRICFWVSIVPAAILCLAM  225 (379)
Q Consensus       204 ~~~wr~~f~~~~~~~~~~~~~~  225 (379)
                      .| |...|.+..+.+++..++.
T Consensus       410 ~g-W~g~Fi~~~~~a~l~~lll  430 (448)
T COG2271         410 WG-WDGGFIVLSIAALLAILLL  430 (448)
T ss_pred             CC-CcchHHHHHHHHHHHHHHH
Confidence            88 9999988666655554443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.18  E-value=7.7e-10  Score=100.15  Aligned_cols=146  Identities=16%  Similarity=0.116  Sum_probs=101.9

Q ss_pred             hhhhhhccCCcchhHHHHHHHHHH-HHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHH---hcc-cchHHHHHHHH
Q 016986           75 ESISLDLGFNGNTLAEGLVVSMCL-GGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS---ATT-RNLIGMLLGRF  149 (379)
Q Consensus        75 ~~i~~~~~~~~~~~~~~~~~s~~~-~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~  149 (379)
                      +.+.+++|.+.++.  +++.+... .+..++.++.|++.||+|||+.+..+.++..+..+..   ++. ++.+.+++.-+
T Consensus       234 ~~l~~~~G~~~~~~--g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  311 (402)
T PRK11902        234 TFLIRGAGFSAGEV--GIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIG  311 (402)
T ss_pred             HHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            45667788876666  77776554 4678999999999999999998887777666554332   344 45565555543


Q ss_pred             ----HHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHH
Q 016986          150 ----VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (379)
Q Consensus       150 ----l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~  225 (379)
                          +.|++.+...+....++.+.+|.++    .++.+...++|..+++.++|.+.+..| |+..|.+.++.+++.+++.
T Consensus       312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        312 IENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHH
Confidence                4455555566666666666666544    455555667777766778999999998 9999999887777765555


Q ss_pred             hh
Q 016986          226 VF  227 (379)
Q Consensus       226 ~~  227 (379)
                      ..
T Consensus       387 ~~  388 (402)
T PRK11902        387 WL  388 (402)
T ss_pred             HH
Confidence            43

>PRK09848 glucuronide transporter; Provisional

Probab=99.18  E-value=5.8e-10  Score=102.47  Aligned_cols=122  Identities=17%  Similarity=0.074  Sum_probs=95.3

Q ss_pred             hhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhccc--chHHHHHHHHHHHhhhc
Q 016986           79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMG  156 (379)
Q Consensus        79 ~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~  156 (379)
                      +.+|.+....  ++......++..++.++++++.||+|+|+++.++.++..++.++..+.+  +++.+++..++.|+|.+
T Consensus       257 ~~~g~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~  334 (448)
T PRK09848        257 YVLNDTGLFT--VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQG  334 (448)
T ss_pred             eecCChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence            3455433222  3434444567788999999999999999999999998888877766643  56777777889999999


Q ss_pred             hhhHHHHHHHHhhcCCC-------cchhHHHHHHHHHHHHHHHHHhhcccccc
Q 016986          157 LGPTVAALYVTEVSPPF-------VRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (379)
Q Consensus       157 ~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  202 (379)
                      ...+...++.+|..+.+       ++|...++.+....+|..+++.+.+.+.+
T Consensus       335 ~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~  387 (448)
T PRK09848        335 VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG  387 (448)
T ss_pred             HHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988754       35899999999999999999888776643

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.18  E-value=5.5e-10  Score=114.70  Aligned_cols=142  Identities=17%  Similarity=0.110  Sum_probs=118.0

Q ss_pred             hhhhhhccCCcc-hhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHh
Q 016986           75 ESISLDLGFNGN-TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGT  153 (379)
Q Consensus        75 ~~i~~~~~~~~~-~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~  153 (379)
                      +.+.+++|.+.. ..  +++.+...++..+++++.|+++||+++|+++.++.++.+++.++..+..+.+.++++.++.|+
T Consensus       257 ~~~~~~~g~s~~~~~--g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  334 (1146)
T PRK08633        257 AYAKEVLGLDNTFQV--QYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGF  334 (1146)
T ss_pred             HHHHHHhCCCcHHHH--HHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            344566888766 55  899999999999999999999999999999999988888888888888898888899999999


Q ss_pred             hhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Q 016986          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA  218 (379)
Q Consensus       154 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~  218 (379)
                      +.+...+...+++.+..|+++||+++++.+....+|.++++.+++.+......+...|++.+...
T Consensus       335 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  399 (1146)
T PRK08633        335 SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVT  399 (1146)
T ss_pred             HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            99999888999999999999999999999999999998888887766542111555565544433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.18  E-value=1.4e-09  Score=98.65  Aligned_cols=156  Identities=19%  Similarity=0.180  Sum_probs=117.0

Q ss_pred             cchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccc-----hhHHHHHHHhHHHHHHHHHHhcc----cch
Q 016986           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRAFQLCALPMIIGASISATT----RNL  141 (379)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~-----Grr~~l~~~~~~~~~~~~~~~~~----~~~  141 (379)
                      .+..|.+++++|++..+.  ....+...+.. ..-+++|.++|.+     .||+-++++.++..++.+..+..    .+.
T Consensus        10 ~~~~~~l~~~l~ls~~~~--~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~   86 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQL--QRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSA   86 (433)
T ss_pred             HHHHHHHHHHcCCCHHHH--HHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchh
Confidence            345678899999988777  45566655554 4567889999976     36666677777776655555443    356


Q ss_pred             HHHHHHHHHHHhhhchhhHHHHHHHHhhcC--CCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Q 016986          142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSP--PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA  219 (379)
Q Consensus       142 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~  219 (379)
                      ....+.-++..+|......++-++..|...  ++.||...+.......+|.+++..++|.+.+..+ +++.|.+.+....
T Consensus        87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~  165 (433)
T PF03092_consen   87 AIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALPL  165 (433)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHHH
Confidence            666677788889999999999999999883  3447788888888999999999999999998888 7999988776666


Q ss_pred             HHHHHHhhcCC
Q 016986          220 ILCLAMVFCAE  230 (379)
Q Consensus       220 ~~~~~~~~~~e  230 (379)
                      +..+..+++.|
T Consensus       166 l~~~~~~~~~~  176 (433)
T PF03092_consen  166 LMLIVALFLLE  176 (433)
T ss_pred             HHHHHHHHhhh
Confidence            65555444444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.17  E-value=1.4e-13  Score=126.50  Aligned_cols=160  Identities=17%  Similarity=0.126  Sum_probs=104.3

Q ss_pred             ccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHh--c--cc----
Q 016986           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA--T--TR----  139 (379)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~--~--~~----  139 (379)
                      .....+.+.+.++.+.+.. .   +......+...++.++...+.||+|||++++.+.++.+++.+..+  .  .+    
T Consensus       270 ~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  345 (451)
T PF00083_consen  270 NFIFYYSPSIFENAGISNS-F---LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSS  345 (451)
T ss_pred             ccccccccccccccccccc-c---cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3445566777788877665 2   122233344456677777999999999999999998888877664  1  11    


Q ss_pred             --chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Q 016986          140 --NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP  217 (379)
Q Consensus       140 --~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~  217 (379)
                        +...+............+..+....+.+|.+|.+.|+++.++......++.++++.+...+.+..+.+...+...++.
T Consensus       346 ~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~  425 (451)
T PF00083_consen  346 WWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVC  425 (451)
T ss_pred             ccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHH
Confidence              122222222221111223345666888999999999999999999888998888888887776664223333334444


Q ss_pred             HHHHHHHHhhcCCC
Q 016986          218 AAILCLAMVFCAES  231 (379)
Q Consensus       218 ~~~~~~~~~~~~e~  231 (379)
                      .+..++.++++||+
T Consensus       426 ~i~~i~~~~~lpET  439 (451)
T PF00083_consen  426 LIAIIFVYFFLPET  439 (451)
T ss_pred             HHHHhheeEEEeeC
Confidence            44444556779998

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.16  E-value=1.2e-09  Score=98.25  Aligned_cols=132  Identities=18%  Similarity=0.285  Sum_probs=98.9

Q ss_pred             hhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcc-----cchHHHHHHHHHH
Q 016986           77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-----RNLIGMLLGRFVV  151 (379)
Q Consensus        77 i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~  151 (379)
                      +.+++|.+..+.  +++.+...++..++.++.|++.||+|||+.+..+..+..++.++....     ++...+++..++.
T Consensus       233 ~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (385)
T TIGR00710       233 YIDIMGVSPSVF--GLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFV  310 (385)
T ss_pred             HHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            345788876666  888999999999999999999999999999988888777776665543     2344555567888


Q ss_pred             HhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHH-HHHHHHHhhcccccccchhhHHHHHH
Q 016986          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATC-LGLMGSLLIGIPVKEIAGWWRICFWV  213 (379)
Q Consensus       152 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~~~wr~~f~~  213 (379)
                      |++.+...+.......|..| ++|+++.++.+.... .|.+.++.++ .+.+..+ |...+..
T Consensus       311 g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~-~~~~~~~  370 (385)
T TIGR00710       311 GIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGNTA-WPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hccccCh-HHHHHHH
Confidence            99999888888888899886 679999999876654 4666667665 4444333 4444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.15  E-value=7.3e-10  Score=98.62  Aligned_cols=116  Identities=19%  Similarity=0.226  Sum_probs=93.5

Q ss_pred             ccchhhhhhhhccCCcchhHHHHHHHHHH-HHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcc----------
Q 016986           70 VNEPLESISLDLGFNGNTLAEGLVVSMCL-GGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT----------  138 (379)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~-~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~----------  138 (379)
                      .....|.+.+++|.+.++.  +.+.++.. ++..++.+++|++.||+|||+.+..+.++.++...+..+.          
T Consensus       228 ~~~~~~~~l~~~g~~~~~~--g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (356)
T TIGR00901       228 ATVLTTLFLLDMGFSKEEI--ALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGIT  305 (356)
T ss_pred             HHHHHHHHHHHcCCCHHHH--HHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence            3445666666688876665  77776655 5678999999999999999999998888877776655442          


Q ss_pred             -cchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 016986          139 -RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATC  187 (379)
Q Consensus       139 -~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  187 (379)
                       ++.+.+..+.++.+++.+...+...+++.|.+|+|+||+.+++.+...+
T Consensus       306 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       306 FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence             4556777788999999999999999999999999999999999877654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.14  E-value=5.9e-10  Score=103.62  Aligned_cols=131  Identities=16%  Similarity=0.141  Sum_probs=109.2

Q ss_pred             chhhhhh-hhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhc----ccchHHHHH
Q 016986           72 EPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT----TRNLIGMLL  146 (379)
Q Consensus        72 ~~~~~i~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~  146 (379)
                      ..+|.+. +.+|.+..+.  ++......++..++.++.|++.||+|||+++..+..+.+++.++..+    ..+++.+..
T Consensus       276 ~~~p~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (485)
T TIGR00711       276 YLLPLYLQQVLGYTALQA--GLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIAL  353 (485)
T ss_pred             HHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Confidence            4556554 4478776666  88899999999999999999999999999999999888888877662    235666777


Q ss_pred             HHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccc
Q 016986          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (379)
Q Consensus       147 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  204 (379)
                      ..++.|++.+...+.......+..|+++|+.+.++.+....+|..+|+.+.+.+.++.
T Consensus       354 ~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       354 PQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999888777778888899999999999999999999999999888776543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.14  E-value=8.1e-11  Score=99.23  Aligned_cols=131  Identities=20%  Similarity=0.151  Sum_probs=97.0

Q ss_pred             HHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchh
Q 016986           98 LGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGT  177 (379)
Q Consensus        98 ~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~  177 (379)
                      .+.-..|.++.+.+.||+|||+.+..++++++++.++.-.+.+...+.+.-+..-++.++.+.+.+.|..|.+|.+.|+.
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat  470 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT  470 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence            34556888999999999999999999999999999988777654444433333334444555667789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 016986          178 YGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES  231 (379)
Q Consensus       178 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~  231 (379)
                      +.|.......+|.++.|+++ ......  -..+..+.+...++..+...++|-+
T Consensus       471 gvGtcSsmaRIggI~~p~iA-~~~e~s--~sl~i~vy~~~~ilagIavcffPiE  521 (528)
T KOG0253|consen  471 GVGTCSSMARIGGIFSPVIA-MRAELS--TSLPIFVYGALFILAGIAVCFFPIE  521 (528)
T ss_pred             chhhhhhHHhhhhhhhhHHH-HHhccc--eeehHHHHHHHHHHHHHHheeeeec
Confidence            99999999999999999998 222222  1334445555555666666777744

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.13  E-value=4.5e-10  Score=99.69  Aligned_cols=123  Identities=27%  Similarity=0.342  Sum_probs=104.1

Q ss_pred             ccchhhhh-hhhccCC-cchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhccc---chHHH
Q 016986           70 VNEPLESI-SLDLGFN-GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR---NLIGM  144 (379)
Q Consensus        70 ~~~~~~~i-~~~~~~~-~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~l  144 (379)
                      .....|.+ .+++|.+ ..+.  +++.++..++..++.++.|+++||+|+|+..........+..+...+..   +....
T Consensus       225 ~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (352)
T PF07690_consen  225 FSFFLPLYLQEVLGFSGPSQA--GLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWL  302 (352)
T ss_dssp             HHHHHHHHCCHHHHCCTHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHH
T ss_pred             hhcccchhhhhccCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            45666765 8888887 3444  8889999999999999999999999998888887777777776665543   45777


Q ss_pred             HHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHH
Q 016986          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL  194 (379)
Q Consensus       145 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~  194 (379)
                      ++.-++.|++.+...+....++.|..|+++|+++.++.+...++|..++|
T Consensus       303 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  303 IIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            77888999999999999999999999999999999999999999999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.12  E-value=9.3e-10  Score=112.73  Aligned_cols=143  Identities=16%  Similarity=0.053  Sum_probs=113.5

Q ss_pred             hhhhhh-hhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcc-------------
Q 016986           73 PLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-------------  138 (379)
Q Consensus        73 ~~~~i~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-------------  138 (379)
                      .+|.+. +.+|.+....  |++.+++.++..+++++.|+++|+.++++.+..+.++.+++.+..++.             
T Consensus       247 ~~p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  324 (1140)
T PRK06814        247 QLPLLAKETLGGDENVA--TLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKS  324 (1140)
T ss_pred             HhHHHHHHHcCCchHHH--HHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccc
Confidence            455554 4578776655  899999999999999999999998887777666666666655544443             


Q ss_pred             -------cchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Q 016986          139 -------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (379)
Q Consensus       139 -------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f  211 (379)
                             ++.+.+++..++.|++.+...+...+++.+..|+++||+++|+.+....+|..+++++.+.+.....++...+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~  404 (1140)
T PRK06814        325 ILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWII  404 (1140)
T ss_pred             hhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence                   6777888889999999999999999999999999999999999999999999999999888864332256666


Q ss_pred             HHHHHH
Q 016986          212 WVSIVP  217 (379)
Q Consensus       212 ~~~~~~  217 (379)
                      ++.+..
T Consensus       405 ~~~~~~  410 (1140)
T PRK06814        405 LFIALA  410 (1140)
T ss_pred             HHHHHH
Confidence            554443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.12  E-value=3.1e-08  Score=93.55  Aligned_cols=151  Identities=15%  Similarity=0.176  Sum_probs=117.3

Q ss_pred             hhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhcc-chhHHHHHHHhHHHHHHHHHHhcccc--------hHH
Q 016986           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRN--------LIG  143 (379)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~  143 (379)
                      +...+.+.+|.+.+..  ..+...+....-+.+.+.|.++|+ +||++.++++.++..++.++.+++..        ...
T Consensus        10 LvlYl~~~lg~~~~~A--~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~   87 (654)
T TIGR00926        10 LVLYFLNFLGFSESTS--TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL   87 (654)
T ss_pred             HHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence            3445556678776655  567777777777889999999995 79999999999999999888776421        223


Q ss_pred             HHHHHHHHHhhhchhhHHHHHHHHhhcCCC---cchhHHHHHHHHHHHHHHHHHhhccccccc-------chhhHHHHHH
Q 016986          144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPF---VRGTYGAFIQIATCLGLMGSLLIGIPVKEI-------AGWWRICFWV  213 (379)
Q Consensus       144 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-------~~~wr~~f~~  213 (379)
                      .+++-.+..+|.|+.-+...+...|.++++   +|-....++..+.++|+++++.+.+++.+.       .+ |...|.+
T Consensus        88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~-~~~aF~i  166 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC-YPLAFGV  166 (654)
T ss_pred             HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc-hHHHHHH
Confidence            556778888899999999999999999754   366788888899999999998888877633       24 8999988


Q ss_pred             HHHHHHHHHHHHh
Q 016986          214 SIVPAAILCLAMV  226 (379)
Q Consensus       214 ~~~~~~~~~~~~~  226 (379)
                      .++..++.++.+.
T Consensus       167 ~~i~m~ia~lvf~  179 (654)
T TIGR00926       167 PAILMILALIVFM  179 (654)
T ss_pred             HHHHHHHHHHHHH
Confidence            8777776665554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.11  E-value=3.8e-09  Score=93.97  Aligned_cols=165  Identities=14%  Similarity=0.023  Sum_probs=106.8

Q ss_pred             HHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchh---HHHHHH-HhHHHHHHHH
Q 016986           58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR---RRAFQL-CALPMIIGAS  133 (379)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Gr---r~~l~~-~~~~~~~~~~  133 (379)
                      +..++.......+...+|.+.++.|.+.+ .  +...++..+...++   .++++||.+|   |+.... ..++.++...
T Consensus       199 ~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~--~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~  272 (368)
T TIGR00903       199 AILGFGVALFDNLAIWLEAALRPAGLEDI-A--GDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFL  272 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCChH-H--HHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            33333333333444567777777776643 2  55555555554554   4667776654   444333 4444455554


Q ss_pred             HHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Q 016986          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (379)
Q Consensus       134 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~  213 (379)
                      ..+++.+....++.-.+.|++.....+...++.+|.+|++.|+++.|+.+....+|..++|.+.+.+..  + -+..|.+
T Consensus       273 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~-~~~~f~~  349 (368)
T TIGR00903       273 ALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--S-AEAYFTF  349 (368)
T ss_pred             HHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--C-HHHHHHH
Confidence            555555555555556667777777778888999999999999999999999999999888888776663  3 4666766


Q ss_pred             HHHHHHHHHHHHhhcCCC
Q 016986          214 SIVPAAILCLAMVFCAES  231 (379)
Q Consensus       214 ~~~~~~~~~~~~~~~~e~  231 (379)
                      .++..++..+...+.+++
T Consensus       350 ~~~~~~i~~~~~~~~~~~  367 (368)
T TIGR00903       350 LAILITIAFAIALLLPND  367 (368)
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            666666655544444543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.11  E-value=2.2e-09  Score=99.24  Aligned_cols=113  Identities=9%  Similarity=0.035  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhc-----ccchHHHHHHHHHHHhhhchhhHHHHHH
Q 016986           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-----TRNLIGMLLGRFVVGTGMGLGPTVAALY  165 (379)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~  165 (379)
                      +++.++..++..++.+++++++||+|+|+.+..+.++..++.+...+     .++.+.+++.-++.|++.+...+...++
T Consensus       269 ~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am  348 (473)
T PRK10429        269 PYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIM  348 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777777888999999999999999999999888776665554332     3456677777888999999999999999


Q ss_pred             HHhhcC-------CCcchhHHHHHHHHHHHHHHHHHhhccccccc
Q 016986          166 VTEVSP-------PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (379)
Q Consensus       166 i~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  203 (379)
                      ++|..+       +++.|...+......-+|..+++.+.+.+.+.
T Consensus       349 ~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~  393 (473)
T PRK10429        349 VADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL  393 (473)
T ss_pred             HhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999965       33345688888888888988888887776543

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=99.10  E-value=4e-09  Score=91.66  Aligned_cols=157  Identities=28%  Similarity=0.406  Sum_probs=124.4

Q ss_pred             HHHhhhhccccchhhhhhhhccCCcc--hhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcc
Q 016986           61 FLFGYHLGVVNEPLESISLDLGFNGN--TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT  138 (379)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~  138 (379)
                      +....+........+.+..+++.+..  ..  ++..+.+.++..++.++.|.++||+|||+.++.+.....++.+..++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~   89 (338)
T COG0477          12 LLLGLDLGLLSPALPLLLSTLSLSSGRLLY--GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA   89 (338)
T ss_pred             HHHHHhcchHHHHHHHHHHHcCCCchhHHH--HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC
Confidence            33335555566677777777765542  34  799999999999999999999999999988888887766666777777


Q ss_pred             cc--hHHHHHHHHHHHhhhchhhHHHHHHHHhhcCC-CcchhHHHHHHH-HHHHHHHHHHhhccccccc--chhhHHHHH
Q 016986          139 RN--LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP-FVRGTYGAFIQI-ATCLGLMGSLLIGIPVKEI--AGWWRICFW  212 (379)
Q Consensus       139 ~~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~--~~~wr~~f~  212 (379)
                      .+  .+.+++.|+++|++.+...+...+++.|++|+ ++|+...+.... ...+|..+++.+++.+...  .+ ||+.|.
T Consensus        90 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  168 (338)
T COG0477          90 PNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG-WRAAFL  168 (338)
T ss_pred             ccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHH
Confidence            66  89999999999999999999999999999987 678999998888 5788888888777766654  33 899776


Q ss_pred             HHHHHHHH
Q 016986          213 VSIVPAAI  220 (379)
Q Consensus       213 ~~~~~~~~  220 (379)
                      ........
T Consensus       169 ~~~~~~~~  176 (338)
T COG0477         169 LAALLGLL  176 (338)
T ss_pred             HHHHHHHH
Confidence            65555433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.07  E-value=3.2e-09  Score=92.42  Aligned_cols=147  Identities=12%  Similarity=0.107  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhcc----chhHHHHHH-HhHH
Q 016986           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRRAFQL-CALP  127 (379)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~----~Grr~~l~~-~~~~  127 (379)
                      ++.+....+-..+....--.+.|++..+.|++..-.  +.+--.-.+...+.+|+.|..+||    |||||.++. +.+.
T Consensus        34 li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~--S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~  111 (498)
T KOG0637|consen   34 LISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWS--SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL  111 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccc--cccccccccccceecccccccccccccccccccchHHHhhHH
Confidence            333333333344444444456677778888865544  555555566677899999999995    898877766 4556


Q ss_pred             HHHHHHHHhcccchHH-----------------HHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchh-HHHHHHHHHHHH
Q 016986          128 MIIGASISATTRNLIG-----------------MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGT-YGAFIQIATCLG  189 (379)
Q Consensus       128 ~~~~~~~~~~~~~~~~-----------------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g  189 (379)
                      ..++.++.+++.++..                 ++++-.+.=++.-.....+-++++|...++++.+ +.+.+.....+|
T Consensus       112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG  191 (498)
T KOG0637|consen  112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG  191 (498)
T ss_pred             HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence            6677777777765433                 2233334444455677788899999998776666 999999999999


Q ss_pred             HHHHHhhccccc
Q 016986          190 LMGSLLIGIPVK  201 (379)
Q Consensus       190 ~~~~~~~~~~l~  201 (379)
                      ..+|..++++..
T Consensus       192 nvLGY~~g~y~~  203 (498)
T KOG0637|consen  192 NVLGYALGSYLG  203 (498)
T ss_pred             ceeeeecccccC
Confidence            999998887543

>PRK09669 putative symporter YagG; Provisional

Probab=99.07  E-value=4e-09  Score=96.80  Aligned_cols=115  Identities=15%  Similarity=0.059  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHH-hc-ccchHHHHHHHHHHHhhhchhhHHHHHHHHh
Q 016986           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS-AT-TRNLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (379)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~-~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  168 (379)
                      +.+.....+...++.+++++++||+|+|+.+..+.++..+..+.. .. .++.+.+++..++.|++.+...+...++++|
T Consensus       267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad  346 (444)
T PRK09669        267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD  346 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455666677778899999999999999999998887666543322 22 3567777888899999999999999999999


Q ss_pred             hcCC-------CcchhHHHHHHHHHHHHHHHHHhhcccccccch
Q 016986          169 VSPP-------FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (379)
Q Consensus       169 ~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (379)
                      ..+.       ++.|...+..+....+|..+|+.+++.+.+..|
T Consensus       347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            8852       334567788888888999999888877665443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.07  E-value=1.5e-09  Score=100.84  Aligned_cols=129  Identities=12%  Similarity=0.011  Sum_probs=107.9

Q ss_pred             chhhh-hhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhc---ccchHHHHHH
Q 016986           72 EPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT---TRNLIGMLLG  147 (379)
Q Consensus        72 ~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~  147 (379)
                      ...|. +++.+|.+..+.  |+....+.++..++.++.|++.||+|+|+++..+.++.+++.++...   .++.+...+.
T Consensus       280 ~~~~~~lq~v~g~s~~~a--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  357 (495)
T PRK14995        280 LLMAQELQFVHGLSPLEA--GMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGL  357 (495)
T ss_pred             HHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence            34444 455578876666  89999999999999999999999999999999898888777665543   2456666778


Q ss_pred             HHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccc
Q 016986          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (379)
Q Consensus       148 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  202 (379)
                      .++.|+|.|...+.....+.+..|+++++.+.++.+....+|..+|+.+.+.+.+
T Consensus       358 ~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        358 MALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999998888899999999999999999999999999999998887754

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.07  E-value=2e-09  Score=98.30  Aligned_cols=146  Identities=16%  Similarity=0.130  Sum_probs=116.0

Q ss_pred             HHHHHHHHHhhhhccccchhhhhhhh-ccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHH
Q 016986           55 VATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (379)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~  133 (379)
                      ......++........+...+.+.++ +|.+ +..  +.+..+..++..++.+++++++||+|+|+++..+..+.+++.+
T Consensus       229 ~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~--~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~  305 (428)
T PF13347_consen  229 ILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLI--SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFL  305 (428)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhh--HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHH
Confidence            34444444455555555555555554 3433 333  7888889999999999999999999999999999999999999


Q ss_pred             HHhccc--chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCC-------CcchhHHHHHHHHHHHHHHHHHhhccccccc
Q 016986          134 ISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP-------FVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (379)
Q Consensus       134 ~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  203 (379)
                      +..+.+  |.+.+++.-++.|++.+...+...++++|..+.       ++.|...+..+...-+|..+++.+.+.+.+.
T Consensus       306 ~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~  384 (428)
T PF13347_consen  306 LLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL  384 (428)
T ss_pred             HHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            888886  999999999999999999999999999998863       3458888999998899988888877766543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.05  E-value=2.8e-09  Score=96.20  Aligned_cols=132  Identities=11%  Similarity=0.114  Sum_probs=86.7

Q ss_pred             hhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhc
Q 016986           77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG  156 (379)
Q Consensus        77 i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  156 (379)
                      +.+++|.+..+.  +.+.+...++..++.++.+++.||+|||+++..+.++..++.++..+.++....+..-.+.+.|.+
T Consensus       230 ~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  307 (392)
T PRK10473        230 LMEQMGFSRGEY--AIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFS  307 (392)
T ss_pred             HHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446778876655  888888999999999999999999999999999999888888877777665544444445444444


Q ss_pred             hhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Q 016986          157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (379)
Q Consensus       157 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~  216 (379)
                      ...+.  ....+..|.++|+   +.......++..+++.+++++....+ +.....+.+.
T Consensus       308 ~~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g-~~~~~~~~~~  361 (392)
T PRK10473        308 VGFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLG-ISAWNMLIGI  361 (392)
T ss_pred             HHhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHH
Confidence            44333  2334555654443   33334445555566666666665555 4443344333

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.04  E-value=9e-09  Score=92.77  Aligned_cols=139  Identities=12%  Similarity=-0.013  Sum_probs=106.4

Q ss_pred             hhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhh
Q 016986           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGM  155 (379)
Q Consensus        76 ~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~  155 (379)
                      .+++.+|.+..+.  |++.+.+.++..+++++.+++.||.++|+++..+.. .++..++.++.++++..++..++.|++.
T Consensus       231 ~~~~~lg~s~~~~--G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~  307 (393)
T PRK11195        231 WAPVALGITLNQP--AYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALG  307 (393)
T ss_pred             HHHHHcCCChhHH--HHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence            3456678876665  999999999999999999999999999988887753 4455555566777777777888999998


Q ss_pred             chhhHHHHHHHHhhcCCCc-chhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Q 016986          156 GLGPTVAALYVTEVSPPFV-RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP  217 (379)
Q Consensus       156 ~~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~  217 (379)
                      +...+...+.+.|..|++. +|++.++.+....+|..++..+.+.+....-.++..|...+.+
T Consensus       308 g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (393)
T PRK11195        308 GFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLL  370 (393)
T ss_pred             hhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            8888888888888766654 7999999999999999999988886643321134444333333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.04  E-value=1.1e-08  Score=91.92  Aligned_cols=121  Identities=12%  Similarity=0.117  Sum_probs=86.0

Q ss_pred             hhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHH---Hhc-ccchHHHHHHHHHH
Q 016986           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SAT-TRNLIGMLLGRFVV  151 (379)
Q Consensus        76 ~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~---~~~-~~~~~~l~~~r~l~  151 (379)
                      .+.+++|.+..+.  ++..+...++..++.++.|++.||+|||+.+..+..+..+..+.   ... ..+++...++-.+.
T Consensus       220 ~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (377)
T PRK11102        220 VYIELNGVSPQNF--GYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAF  297 (377)
T ss_pred             HHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            3456678876666  89999999999999999999999999999998887764443322   222 23455555555555


Q ss_pred             HhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHH-HHHHHHHHHhhccc
Q 016986          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIA-TCLGLMGSLLIGIP  199 (379)
Q Consensus       152 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~  199 (379)
                      +.+.+...+....++.|..| ++|+++.++.+.. ..+|..+++++++.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        298 VGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55555556666677788776 7899999987654 56777888877654

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.03  E-value=1.5e-08  Score=94.56  Aligned_cols=173  Identities=17%  Similarity=0.079  Sum_probs=112.0

Q ss_pred             HHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHH
Q 016986           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (379)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~  134 (379)
                      .+.+..+...........+.+.+.+..|.+.+..   +...+..+...++..+...+.||+|||+.++.+...+.++.++
T Consensus       299 ~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~---~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~  375 (513)
T KOG0254|consen  299 GLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTF---LASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVI  375 (513)
T ss_pred             HHHHHHHHHHhCCceEEeehHHHHHhcCCCCchH---HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHH
Confidence            3444444444455666778888888888875532   4455556666777788899999999999999999999999888


Q ss_pred             Hhcccc-------------hHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccc
Q 016986          135 SATTRN-------------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (379)
Q Consensus       135 ~~~~~~-------------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  201 (379)
                      .+....             ...+...-+.......+..++...+.+|.+|.+.|+++.++......+...+-......+.
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~  455 (513)
T KOG0254|consen  376 LAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFIT  455 (513)
T ss_pred             HHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            775421             1122222333333344455666688999999999999999988777776555444433343


Q ss_pred             ccchhhHHHHHH-HHHHHHHHH-HHHhhcCCC
Q 016986          202 EIAGWWRICFWV-SIVPAAILC-LAMVFCAES  231 (379)
Q Consensus       202 ~~~~~wr~~f~~-~~~~~~~~~-~~~~~~~e~  231 (379)
                      +..+ +...|.. .++..+... ..++++||+
T Consensus       456 ~~~~-~~~~f~~f~~~~~~~~~~fv~~~~pET  486 (513)
T KOG0254|consen  456 EALG-IGGTFGYFGGICLLSLIIFVFFFVPET  486 (513)
T ss_pred             Hhcc-ccchHHHHHHHHHHHHHHHheEEcccC
Confidence            3332 2334444 333333333 355678998

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.02  E-value=4.5e-07  Score=82.02  Aligned_cols=287  Identities=8%  Similarity=-0.008  Sum_probs=162.9

Q ss_pred             HHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcc---hhHHHHHHHHHHHHHHHH-HHhHHhhhccchhHHHHHHHh
Q 016986           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGN---TLAEGLVVSMCLGGAFIG-STLSGWIADGVGRRRAFQLCA  125 (379)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~s~~~~~~~i~-~~~~g~l~d~~Grr~~l~~~~  125 (379)
                      ++.++...+..|+..++.+    ++-++++.+.++..   .....++-+...+..++. .++.+++++|++|++++-...
T Consensus         6 ~~k~~~~~l~fF~il~~Y~----iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~   81 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYT----ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVI   81 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHH
Confidence            3444455555555555543    45556666666321   122377777776666555 889999999999999998877


Q ss_pred             HHHHHHHHHHhcc----c---------------------------chHHHHHHHHHHHhhhchhhH-HHHHHHHhhcCCC
Q 016986          126 LPMIIGASISATT----R---------------------------NLIGMLLGRFVVGTGMGLGPT-VAALYVTEVSPPF  173 (379)
Q Consensus       126 ~~~~~~~~~~~~~----~---------------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~  173 (379)
                      ..+....+++++.    +                           +.|...+..+...+-...... ....+..|.++.+
T Consensus        82 ~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~  161 (472)
T TIGR00769        82 SPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTID  161 (472)
T ss_pred             HHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            7777766665544    1                           123333444555555555565 7789999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhcccccc-------cchhhH----HHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChH
Q 016986          174 VRGTYGAFIQIATCLGLMGSLLIGIPVKE-------IAGWWR----ICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTA  242 (379)
Q Consensus       174 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~~wr----~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~  242 (379)
                      |-.|..++.+.+.++|.++++.+..++.+       ..+.|.    ..+.+.++...+...+..++.+..   ..+++..
T Consensus       162 qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~---~~~~~~~  238 (472)
T TIGR00769       162 EAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNV---LTDPRSY  238 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCcccc
Confidence            99999999999999999999988877762       222252    222333333333333333332110   0000000


Q ss_pred             HHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCC
Q 016986          243 EAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS  322 (379)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (379)
                      +.+                 +..+.++.+.....+.+.++++|......+...++..........   +-.......+..
T Consensus       239 ~~~-----------------~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~---~k~~v~~~~p~~  298 (472)
T TIGR00769       239 NPA-----------------LKEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVT---WKSKLKAQYPSP  298 (472)
T ss_pred             chh-----------------hccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCH
Confidence            000                 000111122233456777888887776655554444332222211   112222222221


Q ss_pred             ------hhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHH
Q 016986          323 ------SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVI  363 (379)
Q Consensus       323 ------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i  363 (379)
                            .|......++..++..++.+++.+|+|=+....+.-+.+.+
T Consensus       299 ~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       299 NEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence                  22445555666666677779999999877655544444433

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK10133 L-fucose transporter; Provisional

Probab=99.01  E-value=1e-08  Score=93.68  Aligned_cols=136  Identities=13%  Similarity=0.009  Sum_probs=105.4

Q ss_pred             hhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhch
Q 016986           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGL  157 (379)
Q Consensus        78 ~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~  157 (379)
                      ++.+|.+..+.  ++....+.++..++.++.|++.||+|||+++..+.++..++.++..+.++.. .+..-.+.|++.+.
T Consensus       287 ~~~~g~s~~~a--g~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~  363 (438)
T PRK10133        287 EEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSI  363 (438)
T ss_pred             hhcCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHH
Confidence            45678877766  8999999999999999999999999999999998888777776666666542 34566789999999


Q ss_pred             hhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Q 016986          158 GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA  218 (379)
Q Consensus       158 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~  218 (379)
                      .+|...+...|..++ +.+.+.++..+. .+|..++|.+.+.+.+..|.-|..|++..+..
T Consensus       364 i~P~~~s~a~~~~~~-~~~~as~l~~~~-~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~  422 (438)
T PRK10133        364 QYPTIFSLGIKNLGQ-DTKYGSSFIVMT-IIGGGIVTPVMGFVSDAAGNIPTAELIPALCF  422 (438)
T ss_pred             HHHHHHHHHHcccch-hhccchhHHhHH-hccchHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            999999999998875 467777777654 46777787888888776642366776544433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.99  E-value=3e-09  Score=91.91  Aligned_cols=154  Identities=16%  Similarity=0.149  Sum_probs=116.2

Q ss_pred             cchhhh-hhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhccc-------chH
Q 016986           71 NEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR-------NLI  142 (379)
Q Consensus        71 ~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~-------~~~  142 (379)
                      +..+|. +.++|+.+..+.  |.....+.+...+.-+..|+++||+|.+|++......++++..+.+...       +..
T Consensus       238 s~~l~~~~~~~fg~~~~~A--g~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~  315 (417)
T COG2223         238 SAYLPMYLVTQFGLSPVTA--GLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFV  315 (417)
T ss_pred             HHHHHHHHHHhcCCChhhH--HHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchH
Confidence            344443 567899987777  8999999999999999999999999999999999999888888877663       333


Q ss_pred             HHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Q 016986          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC  222 (379)
Q Consensus       143 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~  222 (379)
                      ..++.-+..++..|........++...+|+ +-|.+.|+.+...++|...-|..-+...+..|.+...|++.....+++.
T Consensus       316 ~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~  394 (417)
T COG2223         316 VFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVAL  394 (417)
T ss_pred             HHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            333333333333333334455777777764 6899999999999999888888888777777768999998777777766


Q ss_pred             HHHhh
Q 016986          223 LAMVF  227 (379)
Q Consensus       223 ~~~~~  227 (379)
                      +..+.
T Consensus       395 v~~~~  399 (417)
T COG2223         395 VLTWA  399 (417)
T ss_pred             HHHHH
Confidence            65443

>PRK11043 putative transporter; Provisional

Probab=98.99  E-value=3.3e-08  Score=89.58  Aligned_cols=130  Identities=11%  Similarity=0.014  Sum_probs=97.8

Q ss_pred             hhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHH---hc--ccchHHHHHH
Q 016986           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS---AT--TRNLIGMLLG  147 (379)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~---~~--~~~~~~l~~~  147 (379)
                      ..|.+.+++|.+..+.  ++......++..++.++.+++.||+|+|+.+..+.+..+++.+..   ..  .++...+++.
T Consensus       225 ~~p~~~~~~g~s~~~~--g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (401)
T PRK11043        225 GSPFILEQMGYSPADI--GLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP  302 (401)
T ss_pred             HhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            4566777788876665  777777788888999999999999999987766555544443322   22  3456656666


Q ss_pred             HHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch
Q 016986          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (379)
Q Consensus       148 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (379)
                      ..+.|++.+...+.......|..| ++|+++.++++.....+...++.+.+.+.+...
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~  359 (401)
T PRK11043        303 FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPL  359 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence            778888888888888888888776 579999999998878787888888777766543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.98  E-value=3e-08  Score=91.51  Aligned_cols=134  Identities=13%  Similarity=-0.017  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHHHHHhHH----hhhcc-chhHHHH--HHHhHHHHHHHHHHhc---------ccchHHHHHHHHHHHhh
Q 016986           91 GLVVSMCLGGAFIGSTLSG----WIADG-VGRRRAF--QLCALPMIIGASISAT---------TRNLIGMLLGRFVVGTG  154 (379)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g----~l~d~-~Grr~~l--~~~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~~  154 (379)
                      +++.+...+...+.+++..    ++.|| .+++...  .+|+++.+++.+..++         ..|+++++...++.|+|
T Consensus       315 ~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~g  394 (475)
T TIGR00924       315 IWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLG  394 (475)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHH
Confidence            6888888888888887755    44444 3333433  7788888888777664         46899999999999999


Q ss_pred             hchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHH
Q 016986          155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (379)
Q Consensus       155 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~  225 (379)
                      +....|...+++++..|++.||+++|++..+..+|..+++.+........+ |...|...++..++..++.
T Consensus       395 e~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  464 (475)
T TIGR00924       395 ELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQG-VTGVFGKIGLVTLLVGVVM  464 (475)
T ss_pred             HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988887766656 7777776555555444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.97  E-value=8.5e-09  Score=92.99  Aligned_cols=134  Identities=15%  Similarity=-0.015  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHh-cc-----cchHHHHHHHHHHHhhhchhhHHHHHHHH
Q 016986           94 VSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA-TT-----RNLIGMLLGRFVVGTGMGLGPTVAALYVT  167 (379)
Q Consensus        94 ~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~-~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~  167 (379)
                      ..+..+...+..+++|+++||+|+|+++.++.+...++..... ..     .+++.+.+..+...++.|........++.
T Consensus       292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip  371 (462)
T PRK15034        292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA  371 (462)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence            3344577788999999999999999999998887777654321 11     34565555555555555556666667788


Q ss_pred             hhcCC---------------------CcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHh
Q 016986          168 EVSPP---------------------FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV  226 (379)
Q Consensus       168 ~~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~  226 (379)
                      +.+|+                     ++-|.+.|+.+....+|..+.|.+-+...+..|.+...|+...+..++++++-+
T Consensus       372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            88874                     155678888888888888888877666666666588888887777666666544


Q ss_pred             h
Q 016986          227 F  227 (379)
Q Consensus       227 ~  227 (379)
                      +
T Consensus       452 ~  452 (462)
T PRK15034        452 L  452 (462)
T ss_pred             H
Confidence            3

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.96  E-value=8.7e-08  Score=81.36  Aligned_cols=154  Identities=16%  Similarity=0.124  Sum_probs=123.5

Q ss_pred             ccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhcc-chhHHHHHHHhHHHHHHHHHHhcccchHHHHHHH
Q 016986           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRNLIGMLLGR  148 (379)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r  148 (379)
                      .-.-+|.+..|-|+|..+.  |++.+...+.....++....+.+| -.+|+..+....++.++.+.+.+.+.-..+.- -
T Consensus       227 ~~~WLP~ili~~G~sa~~a--G~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~  303 (395)
T COG2807         227 VIGWLPAILIDRGLSAAEA--GSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-A  303 (395)
T ss_pred             HHHHHHHHHHHcCCCHHHh--hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-H
Confidence            3456899999999988887  999999999999999999999995 56888888888888888888887765544444 4


Q ss_pred             HHHHhhhchhhHHHHHHHHhhcCC-CcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHh
Q 016986          149 FVVGTGMGLGPTVAALYVTEVSPP-FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV  226 (379)
Q Consensus       149 ~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~  226 (379)
                      ++.|+|.|..++.....+.+..++ ++-++-.++.+....+=..+||.+.|.+.|..|+|+..+...+...+...+.-+
T Consensus       304 ~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl  382 (395)
T COG2807         304 LLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGL  382 (395)
T ss_pred             HHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999998864 444555566666555667889999999999998899998877666665555443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.90  E-value=8.6e-08  Score=89.00  Aligned_cols=131  Identities=9%  Similarity=-0.002  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHHHhH----HhhhccchhHHHHHHHhHHHHHHHHHHhcccc---------hHHHHHHHHHHHhhhch
Q 016986           91 GLVVSMCLGGAFIGSTLS----GWIADGVGRRRAFQLCALPMIIGASISATTRN---------LIGMLLGRFVVGTGMGL  157 (379)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~----g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~---------~~~l~~~r~l~G~~~~~  157 (379)
                      ++..++..+...+..++.    +++.||++.++.+.+|+++.+++.+..+.+++         .++++..+++.|+|+..
T Consensus       319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~  398 (500)
T PRK09584        319 EQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM  398 (500)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence            566666665555555555    77888888888899999999999888776654         46788899999999999


Q ss_pred             hhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccc----------ccchhhHHHHHHHHHHHHHHH
Q 016986          158 GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK----------EIAGWWRICFWVSIVPAAILC  222 (379)
Q Consensus       158 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~----------~~~~~wr~~f~~~~~~~~~~~  222 (379)
                      ..|...+++.+..|++.||+++|++..+..+|..++..+.....          ...+ ..+.|...++.+++..
T Consensus       399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~a  472 (500)
T PRK09584        399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEV-YGRVFLQIGIATAVIA  472 (500)
T ss_pred             HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhh-HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888888777665553211          0112 4667766555554433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.90  E-value=3.4e-08  Score=89.64  Aligned_cols=176  Identities=15%  Similarity=0.094  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHHHhhhhccccchhhhhhh-hccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchh---------HH
Q 016986           50 FPHVLVATLSSFLFGYHLGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR---------RR  119 (379)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Gr---------r~  119 (379)
                      -..+..++++.+........+...+|.+.+ -+|.+..+.  |++.++..+...+..+++|.++||.-+         |.
T Consensus       257 s~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~--G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rki  334 (466)
T KOG2532|consen  257 SPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRET--GFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKI  334 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHH
Confidence            346667778888888887777778887655 478877777  999999999999999999999998744         44


Q ss_pred             HHHHHhHHHHHHHHHHhcccchHH-HHHHHHHHHhh-hchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhc
Q 016986          120 AFQLCALPMIIGASISATTRNLIG-MLLGRFVVGTG-MGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG  197 (379)
Q Consensus       120 ~l~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~-~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  197 (379)
                      .-.++....+++.+..++.++-.. ..+.-+..+.+ .|...+....-..|.. +++-+..+++.+....+..+++|.+.
T Consensus       335 fn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~v  413 (466)
T KOG2532|consen  335 FNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLV  413 (466)
T ss_pred             HHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHhe
Confidence            444566666666666676653111 11111222222 2222222223333434 46689999999999999999999999


Q ss_pred             cccccc--chhhHHHHHHHHHHHHHHHHHHhhc
Q 016986          198 IPVKEI--AGWWRICFWVSIVPAAILCLAMVFC  228 (379)
Q Consensus       198 ~~l~~~--~~~wr~~f~~~~~~~~~~~~~~~~~  228 (379)
                      +.+.+.  ...||+.|++.++..++..+.+.++
T Consensus       414 g~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  414 GIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             eeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            999852  2249999999888877776655444

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.88  E-value=6e-08  Score=87.79  Aligned_cols=140  Identities=9%  Similarity=-0.090  Sum_probs=101.2

Q ss_pred             cchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHH
Q 016986           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV  150 (379)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  150 (379)
                      ...++.+.++.+...+....+...+.+..+..++.++.+++.||+++|+++.++.++..+..++..+.++... ...-++
T Consensus       252 ~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~  330 (410)
T TIGR00885       252 WTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTL  330 (410)
T ss_pred             HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHH
Confidence            3455555555433222222244566666778899999999999999999999999998888888888777544 566778


Q ss_pred             HHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccc-----hhhHHHHHH
Q 016986          151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA-----GWWRICFWV  213 (379)
Q Consensus       151 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~~wr~~f~~  213 (379)
                      .|++.++.+|...+...+..+++.+....++. ++ .+|..+.|.+.|.+.+..     |+.+..|++
T Consensus       331 ~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~-~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~  396 (410)
T TIGR00885       331 CSAFMSLMFPTIYGIALKGLGQDTKYGAAGLV-MA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFIL  396 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH-HH-HhccchHHHHHHHHHHHhcccccCccchHHHH
Confidence            88889999999999999999865443333333 33 389999999999999853     225667765

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=7.4e-09  Score=88.60  Aligned_cols=168  Identities=16%  Similarity=0.092  Sum_probs=125.8

Q ss_pred             HHHHHHHHHhhhhccccchhhh-hhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccch--hHHHHHHHhHHHHHH
Q 016986           55 VATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG--RRRAFQLCALPMIIG  131 (379)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~G--rr~~l~~~~~~~~~~  131 (379)
                      ++.......+......-|.++. +.+.+..+..+.  |+..--..+.+.++..+.|.++||++  |-.....|++..++.
T Consensus       274 ~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~--G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~  351 (464)
T KOG3764|consen  274 LIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEV--GLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVS  351 (464)
T ss_pred             hhhcchhhccchHHHhCcccHHHHHHhccCCCcce--eeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence            3333334444555555666665 556666333344  55555667788999999999999999  655556677777777


Q ss_pred             HHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCC------cchhHHHHHHHHHHHHHHHHHhhcccccccch
Q 016986          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF------VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (379)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (379)
                      +....+++++.++.+-++..|++.+...........+....+      .-|...++...++++|..+||.+++.+.+..|
T Consensus       352 ~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iG  431 (464)
T KOG3764|consen  352 SGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIG  431 (464)
T ss_pred             hchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehh
Confidence            788889999999999999999888887777666666666432      34688999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHH
Q 016986          206 WWRICFWVSIVPAAILCLAM  225 (379)
Q Consensus       206 ~wr~~f~~~~~~~~~~~~~~  225 (379)
                       ++|.-.+.++..++...+.
T Consensus       432 -F~wl~~iig~~n~iyapvl  450 (464)
T KOG3764|consen  432 -FEWLMTIIGILNLIYAPVL  450 (464)
T ss_pred             -HHHHHHHHHHHHHHHHHHH
Confidence             7888877777766654443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.87  E-value=1.1e-07  Score=84.94  Aligned_cols=122  Identities=16%  Similarity=0.167  Sum_probs=96.9

Q ss_pred             hccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhccc--chHHHHHHHHHHHhhhch
Q 016986           80 DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMGL  157 (379)
Q Consensus        80 ~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~  157 (379)
                      ++.++.++....+.......+..++.+++.++++|+|+|+++..+.++..++.++.-+.+  +...+++..++.++|.+.
T Consensus       264 ~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~  343 (467)
T COG2211         264 TYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGI  343 (467)
T ss_pred             EEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhc
Confidence            445666666656777777888888899999999999999999999999999999877765  788888899999999999


Q ss_pred             hhHHHHHHHHhhcCC-------CcchhHHHHHHHHHHHHHHHHHhhccccc
Q 016986          158 GPTVAALYVTEVSPP-------FVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (379)
Q Consensus       158 ~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  201 (379)
                      ..+...++++|..+-       +.-|...+......=+|..++..+.++..
T Consensus       344 ~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L  394 (467)
T COG2211         344 ANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL  394 (467)
T ss_pred             cccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999887642       23356667777666677777766555444

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.82  E-value=2.2e-07  Score=83.93  Aligned_cols=126  Identities=17%  Similarity=0.141  Sum_probs=93.5

Q ss_pred             hhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhH-HHHHHHHHHhc--ccchHHHHHHHHHHHh
Q 016986           77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL-PMIIGASISAT--TRNLIGMLLGRFVVGT  153 (379)
Q Consensus        77 i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~-~~~~~~~~~~~--~~~~~~l~~~r~l~G~  153 (379)
                      +.+.+|.+..+.  +++.....++..++.++.+++.||+|++........ ...+.......  ..+.+.+++..++.|+
T Consensus       234 ~~~~~g~~~~~~--~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (394)
T PRK11652        234 MGAVLGLSSMTV--SILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFF  311 (394)
T ss_pred             HHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            344478776555  888888888889999999999999985443332222 22222222222  3456677778899999


Q ss_pred             hhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch
Q 016986          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (379)
Q Consensus       154 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (379)
                      +.+...+....+..|.+| ++++.+.++.+....+|..+++.+++.+.....
T Consensus       312 g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~  362 (394)
T PRK11652        312 GAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQ  362 (394)
T ss_pred             HHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCch
Confidence            999999999999999987 578999999999999999999999888766543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.82  E-value=1.1e-08  Score=90.76  Aligned_cols=167  Identities=22%  Similarity=0.145  Sum_probs=135.9

Q ss_pred             HHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHh
Q 016986           57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (379)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~  136 (379)
                      ++..++.+...+.+...+-.-.+|.+-...  ..|........+-.+.-++.+++.+++|+-+++..++.+..+=.+..+
T Consensus       377 f~~av~mG~g~~lv~tFLfWHled~~~~~~--LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S  454 (618)
T KOG3762|consen  377 FFVAVVMGAGVGLVFTFLFWHLEDLGGIKT--LFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYS  454 (618)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCcce--eeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHH
Confidence            333444444444444444445666664332  237667777778888889999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHH-HHHHHHHHHHHhhcccccccchhhHHHHHHHH
Q 016986          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAGWWRICFWVSI  215 (379)
Q Consensus       137 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~  215 (379)
                      +.+|.|+.+-..+++|+..+..+.+..+|+++..||+-|..+.++.+ ...++|--+|.++||.+....+ =|..|.+.+
T Consensus       455 ~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~g  533 (618)
T KOG3762|consen  455 YLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFG  533 (618)
T ss_pred             HhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHH
Confidence            99999999999999999999999999999999999999999999975 5668889999999999999988 588888887


Q ss_pred             HHHHHHHHHHh
Q 016986          216 VPAAILCLAMV  226 (379)
Q Consensus       216 ~~~~~~~~~~~  226 (379)
                      +.+++.++...
T Consensus       534 iAcl~~l~~~~  544 (618)
T KOG3762|consen  534 IACLVTLALFI  544 (618)
T ss_pred             HHHHHHHHHHH
Confidence            77776655543

>TIGR00788 fbt folate/biopterin transporter

Probab=98.79  E-value=8.3e-08  Score=88.32  Aligned_cols=150  Identities=11%  Similarity=-0.003  Sum_probs=117.0

Q ss_pred             hhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcc----------cchHHHHHHH
Q 016986           79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT----------RNLIGMLLGR  148 (379)
Q Consensus        79 ~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~r  148 (379)
                      +.+|.+....  |++.....++..++....+++.+|++.|+++.++.++.+++.+.....          ++.+.++..-
T Consensus       281 ~~lG~s~~~~--G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~  358 (468)
T TIGR00788       281 QCLPGGPSFS--GMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS  358 (468)
T ss_pred             ccCCCCcchh--hhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence            5678877777  899999999999999999999999999999999999998887554311          3334455567


Q ss_pred             HHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch-----h-hHHHHH-HHHHHHHHH
Q 016986          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-----W-WRICFW-VSIVPAAIL  221 (379)
Q Consensus       149 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-----~-wr~~f~-~~~~~~~~~  221 (379)
                      ++.+++.+........++.+..|+++++...++.+...++|..+++.+++.+.+..|     . .++... +..+..++.
T Consensus       359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~  438 (468)
T TIGR00788       359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLP  438 (468)
T ss_pred             HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999999999999999999988877654     1 222222 233334444


Q ss_pred             HHHHhhcCC
Q 016986          222 CLAMVFCAE  230 (379)
Q Consensus       222 ~~~~~~~~e  230 (379)
                      +...+++|+
T Consensus       439 l~~~~llP~  447 (468)
T TIGR00788       439 LPLLHLLPR  447 (468)
T ss_pred             HHHHHhCCC
Confidence            444456774

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.77  E-value=8.2e-09  Score=89.95  Aligned_cols=177  Identities=17%  Similarity=0.066  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHH------HHHHHHH-HHHHHHHHHhHHhhhccchhHHHHHH
Q 016986           51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAE------GLVVSMC-LGGAFIGSTLSGWIADGVGRRRAFQL  123 (379)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~s~~-~~~~~i~~~~~g~l~d~~Grr~~l~~  123 (379)
                      +.++..+...|+........+.....+.+..+..+++...      +....+. .+++..+-.+...++|+.|||+..+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            5566677777877777777788888888877775444321      1111111 12223355666789999999999999


Q ss_pred             HhHHHHHHHHHHhcccc-h-------HHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHh
Q 016986          124 CALPMIIGASISATTRN-L-------IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLL  195 (379)
Q Consensus       124 ~~~~~~~~~~~~~~~~~-~-------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  195 (379)
                      |.+++++..+..+...| .       ....+..++.-+|-+   .....+.+|.+|.+.|+..-|+..+..-+|++++..
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~  460 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF  460 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence            99999999999888766 1       222223344433322   234467789999999999999999999999999999


Q ss_pred             hcccccc-----cchhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 016986          196 IGIPVKE-----IAGWWRICFWVSIVPAAILCLAMVFCAES  231 (379)
Q Consensus       196 ~~~~l~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~~e~  231 (379)
                      .-.++.+     ..+ -|+.+++.+....+..+..+++||+
T Consensus       461 ~F~~~t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~l~pEt  500 (538)
T KOG0252|consen  461 GFLYLTDHNYPPNIG-VRNVFIILAGCMLLGILFTLLIPET  500 (538)
T ss_pred             HhhHhhhccCCcccc-chHHHHHHHHHHHHhHheeEEeecc
Confidence            8888887     556 7999999888888888888889988

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.77  E-value=1.8e-06  Score=77.25  Aligned_cols=107  Identities=12%  Similarity=-0.088  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCC
Q 016986           94 VSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF  173 (379)
Q Consensus        94 ~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~  173 (379)
                      .++.+..+.+++++.+.+.|+.|.|..++++..+.....+..-+-+ -+-++++-.+.|+|.+..+...-.|++|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            6677777889999999999999999999999999888777665554 566788899999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhccccc
Q 016986          174 VRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (379)
Q Consensus       174 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~  201 (379)
                      .+.+..++.-.....+.++|..+-..+.
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~~  162 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIYF  162 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheeee
Confidence            9999999988888888888766544443

>PRK11462 putative transporter; Provisional

Probab=98.75  E-value=5.9e-07  Score=82.62  Aligned_cols=111  Identities=16%  Similarity=0.020  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhccc--chHHHHHHHHHHHhhhchhhHHHHHHHHh
Q 016986           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (379)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  168 (379)
                      +.+.+.+.++..++.+++++++||+|+|+++..+..+..+..++..+.+  +...+++.-++.|++.+...+...++++|
T Consensus       266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad  345 (460)
T PRK11462        266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSD  345 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667788888899999999999999999988765554444333333322  23234445566788877777777788888


Q ss_pred             hcC-------CCcchhHHHHHHHHHHHHHHHHHhhccccc
Q 016986          169 VSP-------PFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (379)
Q Consensus       169 ~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  201 (379)
                      ..+       .++-|...+......-+|..+++.+++.+.
T Consensus       346 ~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL  385 (460)
T PRK11462        346 TVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWML  385 (460)
T ss_pred             hHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            765       222344456666667777777766665544

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.68  E-value=9.9e-08  Score=63.62  Aligned_cols=81  Identities=17%  Similarity=0.153  Sum_probs=73.3

Q ss_pred             HhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchH
Q 016986           63 FGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLI  142 (379)
Q Consensus        63 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~  142 (379)
                      .+..+..+.|.+|.+++|.++|.++.  |++.+..++||.+|.+...++.++..+++.+..+++...+..+.+++.++++
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~a--g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~   81 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQA--GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFW   81 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence            35566678899999999999998888  9999999999999999999999999999999999999999999999998877


Q ss_pred             HHH
Q 016986          143 GML  145 (379)
Q Consensus       143 ~l~  145 (379)
                      ...
T Consensus        82 ~w~   84 (85)
T PF06779_consen   82 LWS   84 (85)
T ss_pred             HHh
Confidence            653

Note that many members are hypothetical proteins.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.67  E-value=7.8e-07  Score=82.28  Aligned_cols=110  Identities=9%  Similarity=0.012  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhccchhHHH-------HHHHhHHHHHHHHHH-----hcc-----cchHHHHHHHHHHHh
Q 016986           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRA-------FQLCALPMIIGASIS-----ATT-----RNLIGMLLGRFVVGT  153 (379)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~-------l~~~~~~~~~~~~~~-----~~~-----~~~~~l~~~r~l~G~  153 (379)
                      +++.+...+...+..++.+++.||+|+|+.       +.+|+++.+++.+..     .++     .++++++...++.|+
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~  391 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL  391 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            466677777777899999999999999963       667777766665422     121     357778888999999


Q ss_pred             hhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccc
Q 016986          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (379)
Q Consensus       154 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  200 (379)
                      |.+...+....++.+..|++.++.+++++.....+|..++..++...
T Consensus       392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999998888777544

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.66  E-value=8.7e-07  Score=67.50  Aligned_cols=107  Identities=17%  Similarity=0.090  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCC
Q 016986           93 VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP  172 (379)
Q Consensus        93 ~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  172 (379)
                      -.++......+.+++.+.+.+++|.|+.+++|.+...+-... -+-++.+.++.+-++.|++.+..++....++.+..++
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~  120 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE  120 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence            355566667788899999999999999999999998865443 3567788899999999999999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHhhcccc
Q 016986          173 FVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (379)
Q Consensus       173 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l  200 (379)
                      ++|++..+++-.....+.++|.++.-.+
T Consensus       121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  121 ETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888888877777665443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.66  E-value=8.6e-08  Score=85.64  Aligned_cols=115  Identities=17%  Similarity=0.153  Sum_probs=82.4

Q ss_pred             chhhhh-hhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhc--cc--chHHHHH
Q 016986           72 EPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT--TR--NLIGMLL  146 (379)
Q Consensus        72 ~~~~~i-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~--~~--~~~~l~~  146 (379)
                      ...|.+ .+.+|.+..+.  +++.+.+.+...++.++.|+++||+|||+.+..+......+..+..+  .+  +.....+
T Consensus       246 ~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (366)
T TIGR00886       246 SIFAMFFKDQFGLSKVTA--GAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIV  323 (366)
T ss_pred             HHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence            344444 45678876666  88888899999999999999999999998887777666665554443  32  5555555


Q ss_pred             HHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHH
Q 016986          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLG  189 (379)
Q Consensus       147 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  189 (379)
                      .-.+.+++.|...+....++.|..| +++|.+.|+.+....+|
T Consensus       324 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       324 LFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            5555555566666666778888887 68999999988766554

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.58  E-value=1.8e-06  Score=81.07  Aligned_cols=139  Identities=17%  Similarity=0.145  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHH---HHHHHHHHHhhhchhhHHHHHHHHhh
Q 016986           93 VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIG---MLLGRFVVGTGMGLGPTVAALYVTEV  169 (379)
Q Consensus        93 ~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~---l~~~r~l~G~~~~~~~~~~~~~i~~~  169 (379)
                      ................+.+.|++|||.....+.++..++.+..++..+...   ..+...+...+.+..+.....+.+|.
T Consensus       355 ~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el  434 (521)
T KOG0255|consen  355 NFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAEL  434 (521)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            334444455566666689999999999999999999999999988765543   45555566666666677778999999


Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhhcCCCh
Q 016986          170 SPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESP  232 (379)
Q Consensus       170 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p  232 (379)
                      +|...|+.+.+.......+|.+++|.+..........+.... +.....+...+...++||+.
T Consensus       435 ~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~lpet~  496 (521)
T KOG0255|consen  435 IPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLIL-FGWLALLLGLLSLLLLPETK  496 (521)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHH-HHHHHHHHHHHHHhcCcccC
Confidence            999999999999999999999999988755444221122222 22333333444457889884

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.56  E-value=1.2e-06  Score=75.66  Aligned_cols=157  Identities=14%  Similarity=0.130  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHHHhhhhccccchhhhhhhh-ccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHH
Q 016986           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (379)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  128 (379)
                      .+.+..-.++.|+.--........++.+.+| .|.+..+.  +...+.+..+..+|.++..++..|+-..|.+....++.
T Consensus       235 ~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~a--a~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~  312 (422)
T COG0738         235 NKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQA--AYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIA  312 (422)
T ss_pred             ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            3444455566666666666667777777777 66655555  78899999999999999999999999999999999998


Q ss_pred             HHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhH
Q 016986          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (379)
Q Consensus       129 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr  208 (379)
                      .+.++..+++++...+ .+-++.|+..+..+|...+.-.+..|++  ....+..-+...+|.++.|.+.|++.+..+ -.
T Consensus       313 ill~~~~~l~~g~v~~-~~l~~ig~F~simfPTIfslal~~l~~~--ts~~s~~l~maivGGAiiP~l~G~i~d~~g-~~  388 (422)
T COG0738         313 ILLLLAVALIGGVVAL-YALFLIGLFNSIMFPTIFSLALKNLGEH--TSVGSGLLVMAIVGGAIIPPLQGVIADMFG-IQ  388 (422)
T ss_pred             HHHHHHHHHhcChHHH-HHHHHHHHHhHHHHHHHHHHHHhccCcc--ccccceeeeeheecchHHHHHHHHHHHhhh-hH
Confidence            9989999999995544 3467788889999999999999999833  344444445567788889999999999888 35


Q ss_pred             HHHH
Q 016986          209 ICFW  212 (379)
Q Consensus       209 ~~f~  212 (379)
                      ..+.
T Consensus       389 ~~~~  392 (422)
T COG0738         389 LTFL  392 (422)
T ss_pred             HHHH
Confidence            5555

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.52  E-value=9.2e-06  Score=70.90  Aligned_cols=146  Identities=15%  Similarity=0.210  Sum_probs=117.2

Q ss_pred             hhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhc-cchhHHHHHHHhHHHHHHHHH---HhcccchHHHHHHHHHHHh
Q 016986           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-GVGRRRAFQLCALPMIIGASI---SATTRNLIGMLLGRFVVGT  153 (379)
Q Consensus        78 ~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d-~~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~  153 (379)
                      .+-||++..+.  ..+......|..++....|++.. |.++|+.-..|+....++..+   .+...+.+.+...-++.|+
T Consensus       236 g~Vfgmsv~eT--T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~  313 (403)
T PF03209_consen  236 GEVFGMSVGET--TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGL  313 (403)
T ss_pred             hHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            45689988887  78899999999999999998777 788888877777776666554   4556788889999999999


Q ss_pred             hhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch---------hhHHHHHHHHHHHHHHHHH
Q 016986          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG---------WWRICFWVSIVPAAILCLA  224 (379)
Q Consensus       154 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~---------~wr~~f~~~~~~~~~~~~~  224 (379)
                      +.|.+.....+..-|...+++.|..+|.++....+...++..+++.+.+...         .|-..|.+-++..++.+++
T Consensus       314 g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l  393 (403)
T PF03209_consen  314 GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL  393 (403)
T ss_pred             hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999887754321         1566676665555555444


Q ss_pred             H
Q 016986          225 M  225 (379)
Q Consensus       225 ~  225 (379)
                      .
T Consensus       394 l  394 (403)
T PF03209_consen  394 L  394 (403)
T ss_pred             H
Confidence            3

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.49  E-value=6.3e-05  Score=67.56  Aligned_cols=299  Identities=15%  Similarity=0.045  Sum_probs=148.3

Q ss_pred             HHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHH----HHHHHHHHHhHHhhhccchhHHHHHHHhHHHHH
Q 016986           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMC----LGGAFIGSTLSGWIADGVGRRRAFQLCALPMII  130 (379)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~----~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~  130 (379)
                      .+....++...+.-+.....+.+..+...+  ..   +..++|    .+...+.++..|.+.||..|.++.-.+.+..-+
T Consensus         6 ~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~--sL---l~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~   80 (432)
T PF06963_consen    6 RLYLSHFLSTWGDRMWEFAVPLFLISIFPG--SL---LPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNL   80 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--Cc---HHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHH
Confidence            344555555555555455555555555321  11   233333    345567888889999999999987777555433


Q ss_pred             HHHHHh------cc--c----chHHHHHH---HHHHHhhhchh-hHHHHHHHHhhc------CCCcchhHHHHHHHHHHH
Q 016986          131 GASISA------TT--R----NLIGMLLG---RFVVGTGMGLG-PTVAALYVTEVS------PPFVRGTYGAFIQIATCL  188 (379)
Q Consensus       131 ~~~~~~------~~--~----~~~~l~~~---r~l~G~~~~~~-~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~  188 (379)
                      +..+.+      +.  +    +-+....+   -.+.|.-.-.. .....+.-.||.      +++.+.+..+...-.--+
T Consensus        81 sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~  160 (432)
T PF06963_consen   81 SVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLF  160 (432)
T ss_pred             HHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHH
Confidence            322221      11  1    11222111   12222211111 111222233453      234455566666666667


Q ss_pred             HHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH-Hhh----cCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHH
Q 016986          189 GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA-MVF----CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAE  263 (379)
Q Consensus       189 g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~----~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (379)
                      ..+++|++.|.+.+..+ .+....+.+...++..++ +++    +...|+- ..+++.++.....+.. ...........
T Consensus       161 ckllaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L-~~~~~~~~~~~~~~~~-~~~~~~~~~~~  237 (432)
T PF06963_consen  161 CKLLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFVEYFLLARVYNSVPAL-AVKKRSSESESSSDEE-SSSESSSDPSI  237 (432)
T ss_pred             HHHHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHh-cCCCCCcccccccccc-ccccccchhhH
Confidence            78999999999988777 566666555555544332 221    2233321 1111111111000000 00000000000


Q ss_pred             HHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 016986          264 LSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMV  343 (379)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  343 (379)
                      .....+.-.....+|+..++.+.+...+...++++. ..+.......|+... +.++...|..-....+.++.|.++..+
T Consensus       238 ~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~T-VLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~  315 (432)
T PF06963_consen  238 LKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFT-VLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPW  315 (432)
T ss_pred             HHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000011111123456777777766665555555443 333334444444332 444444566777788888899999999


Q ss_pred             HHHhhCchHHHHHHHHHHHH
Q 016986          344 LMDKLGRKALLQWSFFSMVI  363 (379)
Q Consensus       344 l~d~~g~~~~~~~~~~~~~i  363 (379)
                      +.+|+|..+.-.++...-.+
T Consensus       316 l~~riGlvr~G~~~l~~q~~  335 (432)
T PF06963_consen  316 LMKRIGLVRAGLWSLWWQWV  335 (432)
T ss_pred             HHHHhcchhhHHHHHHHHHH
Confidence            99999987776665554433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.43  E-value=0.00044  Score=63.32  Aligned_cols=285  Identities=9%  Similarity=0.065  Sum_probs=151.2

Q ss_pred             chhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccC---CcchhHHHHHHHHHHH-HHHHHHHhHHhhhccchhHHHHH
Q 016986           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGF---NGNTLAEGLVVSMCLG-GAFIGSTLSGWIADGVGRRRAFQ  122 (379)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~s~~~~-~~~i~~~~~g~l~d~~Grr~~l~  122 (379)
                      +..++.++.+.+..++..++.+..-    .+++.+=+   ..+..  ..+-....+ +..+...+..+++++++|.+++-
T Consensus        20 ~~E~~k~~~l~~m~f~i~f~y~~lR----~~KD~lvvt~~gae~I--~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy   93 (491)
T PF03219_consen   20 RSELKKFLPLALMFFFILFNYTILR----DLKDTLVVTAQGAEVI--PFLKVWGVLPVAILFTILYSKLSNRLSREKLFY   93 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HhcCeEEEecCChhHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            3446666666666666666654332    23332211   11222  344332222 44566778899999999999988


Q ss_pred             HHhHHHHHHHHHHhcc--c-------c----------------------hHHHHHHHHHHHhhhchhhH-HHHHHHHhhc
Q 016986          123 LCALPMIIGASISATT--R-------N----------------------LIGMLLGRFVVGTGMGLGPT-VAALYVTEVS  170 (379)
Q Consensus       123 ~~~~~~~~~~~~~~~~--~-------~----------------------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~  170 (379)
                      +....+.....++++.  |       +                      .|...+..+..-+-.....+ .-..+..|.+
T Consensus        94 ~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~it  173 (491)
T PF03219_consen   94 IIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEIT  173 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8777766666665542  1       1                      23333333444443344443 4688899999


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHhhcccccc--------cchhhHHHHHH-HHHHHHH---HHHHHhhcCCChhHHHHc
Q 016986          171 PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE--------IAGWWRICFWV-SIVPAAI---LCLAMVFCAESPHWLYKK  238 (379)
Q Consensus       171 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--------~~~~wr~~f~~-~~~~~~~---~~~~~~~~~e~p~~~~~~  238 (379)
                      +.+|-.|..++.+.+.++|.+++..+...+.+        ..+.|...... .++..+.   ......++.+..   ..+
T Consensus       174 t~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~v---l~~  250 (491)
T PF03219_consen  174 TVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNV---LTD  250 (491)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCc
Confidence            99999999999999999999988888777766        11125544322 2122211   112222221100   000


Q ss_pred             CChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH
Q 016986          239 GRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS  318 (379)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (379)
                      ++..+.                 ...++.++.+..-..+.+.++++|......+..+.+...........-......+.+
T Consensus       251 ~~~~~~-----------------~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~  313 (491)
T PF03219_consen  251 PRFYPS-----------------AKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPD  313 (491)
T ss_pred             cccchh-----------------hhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            000000                 000011112223345567778888877766655555444333222222222222111


Q ss_pred             cCCC---hhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Q 016986          319 AGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWS  357 (379)
Q Consensus       319 ~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~  357 (379)
                      ...-   .|......++..++..++++.+.+|+|-+....+.
T Consensus       314 ~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~Alit  355 (491)
T PF03219_consen  314 PNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALIT  355 (491)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            1000   23445556777777778889999998876655543

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.38  E-value=2.5e-05  Score=70.98  Aligned_cols=143  Identities=15%  Similarity=0.123  Sum_probs=88.6

Q ss_pred             chhhhhh-hhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHh-----cccchHHHH
Q 016986           72 EPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA-----TTRNLIGML  145 (379)
Q Consensus        72 ~~~~~i~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~-----~~~~~~~l~  145 (379)
                      ...|.+. +.+|.+..+.  ++.......+..++..+.+.+.++.++++.......+..++.++..     ..+++...+
T Consensus       239 ~~~P~~l~~~~g~s~~~~--gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~  316 (413)
T PRK15403        239 AVSPVILIDAGGMTTSQF--AWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSV  316 (413)
T ss_pred             HhChHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHH
Confidence            3456454 4557876666  7877777778888888888876544443333222222222222221     233444456


Q ss_pred             HHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Q 016986          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA  219 (379)
Q Consensus       146 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~  219 (379)
                      +..++.++|.+...+...... ..-.+..+|++.++.+.....+..+++..++++..+..  ++.|...++...
T Consensus       317 ~~~~l~~~G~~~~~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~  387 (413)
T PRK15403        317 LGTSLYAFGIGLIFPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGG--RLPFHLLAVVAG  387 (413)
T ss_pred             HHHHHHHHHHHHHhHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--chHHHHHHHHHH
Confidence            778888998888887776433 22223458999999999888888888888888866643  556655444433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.36  E-value=8.5e-06  Score=74.35  Aligned_cols=140  Identities=14%  Similarity=0.059  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHHhHHhhhccch-hHHHHHHHhHHHHHHHHHHhcccc---------------------hHHHHHHHH
Q 016986           92 LVVSMCLGGAFIGSTLSGWIADGVG-RRRAFQLCALPMIIGASISATTRN---------------------LIGMLLGRF  149 (379)
Q Consensus        92 ~~~s~~~~~~~i~~~~~g~l~d~~G-rr~~l~~~~~~~~~~~~~~~~~~~---------------------~~~l~~~r~  149 (379)
                      +....+.+...+.+++..++.+++| ||++..++.++.+++.+...+.++                     .+..++.-.
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA  388 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence            4444555555677788889999999 577778998888888777665442                     366777889


Q ss_pred             HHHhhhchhhHHHHHHHHhhcCC--CcchhHHHHHHHHHHHHHHHHHhhcccccccch-hhHHHHHHHHHHHHHHHHHHh
Q 016986          150 VVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRICFWVSIVPAAILCLAMV  226 (379)
Q Consensus       150 l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~wr~~f~~~~~~~~~~~~~~~  226 (379)
                      +.|+..+.....-++++++..++  ++.|..+|+.+.+..+..++..+..+.+.+..| .-.+.+.++++..++..+..+
T Consensus       389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~  468 (477)
T TIGR01301       389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL  468 (477)
T ss_pred             HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999995  455999999999999999999887777554443 235677778888877766654


Q ss_pred             -hcCCC
Q 016986          227 -FCAES  231 (379)
Q Consensus       227 -~~~e~  231 (379)
                       .+|++
T Consensus       469 ~~~~~~  474 (477)
T TIGR01301       469 ILLPRP  474 (477)
T ss_pred             HhCCCC
Confidence             46654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.32  E-value=2.1e-06  Score=56.91  Aligned_cols=68  Identities=24%  Similarity=0.342  Sum_probs=57.4

Q ss_pred             HHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHH
Q 016986           58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (379)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~  127 (379)
                      ...++.....+...|++|...++.|++..+.  |.+.++..+...++++++|.++||+|+++..+.....
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~i--Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQI--GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            4455555666777889999999999988887  9999999999999999999999999998887776554

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.30  E-value=0.0022  Score=57.55  Aligned_cols=288  Identities=12%  Similarity=0.061  Sum_probs=160.7

Q ss_pred             chhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCc-chhHHHHHHHHHHH-HHHHHHHhHHhhhccchhHHHHHHH
Q 016986           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNG-NTLAEGLVVSMCLG-GAFIGSTLSGWIADGVGRRRAFQLC  124 (379)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~s~~~~-~~~i~~~~~g~l~d~~Grr~~l~~~  124 (379)
                      +..+..++.+.+..++..++.+    .+-.+++.+.++. +....+++-+..-+ +..+..++.+++++++-|.+++-.-
T Consensus        23 r~E~~kflpl~Ll~f~I~~ny~----~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~   98 (509)
T COG3202          23 RYELKKFLPLALLFFCILFNYN----LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYII   98 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence            3446666666666666666554    3445566665542 22222666666666 6678889999999999999999887


Q ss_pred             hHHHHHHHHHHhcc---------cc-----------------------hHHHHHHHHHHHhhhchhhH-HHHHHHHhhcC
Q 016986          125 ALPMIIGASISATT---------RN-----------------------LIGMLLGRFVVGTGMGLGPT-VAALYVTEVSP  171 (379)
Q Consensus       125 ~~~~~~~~~~~~~~---------~~-----------------------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~  171 (379)
                      +..+....+++++.         ++                       .|...+...+.-+-.+.... .-.....|.+.
T Consensus        99 ~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt  178 (509)
T COG3202          99 LGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITT  178 (509)
T ss_pred             HHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            77777777776652         11                       13333334444443344443 45678889999


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHhhcccccccchh---------hHHHHHHHHHHHHHHHHHHhh----cCCChhHHHHc
Q 016986          172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW---------WRICFWVSIVPAAILCLAMVF----CAESPHWLYKK  238 (379)
Q Consensus       172 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~---------wr~~f~~~~~~~~~~~~~~~~----~~e~p~~~~~~  238 (379)
                      .+|-.|..++++.+.+++..++..+..++.++...         -+..+.+.+..+++++.+..+    ..++|+...++
T Consensus       179 ~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~  258 (509)
T COG3202         179 IEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRA  258 (509)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHH
Confidence            99999999999999999999988888888775431         122233333333333333322    22333221111


Q ss_pred             CChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH
Q 016986          239 GRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS  318 (379)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (379)
                      .+.+                       +.++.+..-..+.+-+.++|..+...+...++..+......   .|-..+...
T Consensus       259 ~~kk-----------------------~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~---~wKs~ik~~  312 (509)
T COG3202         259 KKKK-----------------------KKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEG---VWKSGIKEL  312 (509)
T ss_pred             hccc-----------------------ccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHh
Confidence            0000                       00111122234566677777777666555555443322222   122222111


Q ss_pred             cCCC------hhHHHHHHHHH-HHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Q 016986          319 AGLS------SGLANVFVGIA-NLLGSVVAMVLMDKLGRKALLQWSFFSMVIC  364 (379)
Q Consensus       319 ~~~~------~~~~~~~~~~~-~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~  364 (379)
                      .+..      .|......++. .++...+++-+.+|.|=....++.-+.+.++
T Consensus       313 ~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~lit  365 (509)
T COG3202         313 YPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLIT  365 (509)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            1111      22344445555 5556778888888888655555444444444

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.27  E-value=0.00018  Score=61.88  Aligned_cols=151  Identities=13%  Similarity=0.108  Sum_probs=100.3

Q ss_pred             chhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhc-----cchhHHHH
Q 016986           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-----GVGRRRAF  121 (379)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d-----~~Grr~~l  121 (379)
                      +...+.+..+.+.+.+.+.-.+... .+|.+.+.-|.|.++.  +...-++ .- ..--+.|.++.|     |+||||..
T Consensus        27 ~~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~--a~fS~ay-~P-~sLKllWaPiVDs~y~k~~GrrksW  101 (510)
T KOG3574|consen   27 KGDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ--AIFSFAY-WP-FSLKLLWAPIVDSVYSKRFGRRKSW  101 (510)
T ss_pred             hhhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhh--hhhhhhh-hH-HHHHHHHHhhhHHHHHHhhccccce
Confidence            3345566666677777888777777 8898888777776655  3322222 11 234568899999     99999876


Q ss_pred             HH-HhHHHHHHHHHHhc-----------ccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHH
Q 016986          122 QL-CALPMIIGASISAT-----------TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLG  189 (379)
Q Consensus       122 ~~-~~~~~~~~~~~~~~-----------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  189 (379)
                      ++ +..+.+..+...+.           .++...+....++.-+.++.--.+.-.+.-.+..+++-|.+......+...|
T Consensus       102 vvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~G  181 (510)
T KOG3574|consen  102 VVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAG  181 (510)
T ss_pred             eeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhh
Confidence            55 55555555554443           2344445455566666666666666677777788889999988888888888


Q ss_pred             HHHHHhhcccccc
Q 016986          190 LMGSLLIGIPVKE  202 (379)
Q Consensus       190 ~~~~~~~~~~l~~  202 (379)
                      .+++..+--.+.+
T Consensus       182 yfL~~~ifLaL~s  194 (510)
T KOG3574|consen  182 YFLGNVVFLALES  194 (510)
T ss_pred             HHhhcceeeEecC
Confidence            8887766544443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.25  E-value=1.9e-05  Score=73.48  Aligned_cols=147  Identities=16%  Similarity=0.073  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHhhhhccccchhhhhhh-hccCCcch-hHHHHHHHHHHHHHHHHHHhHHhhhccchh-HHHHHHHhHH
Q 016986           51 PHVLVATLSSFLFGYHLGVVNEPLESISL-DLGFNGNT-LAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRAFQLCALP  127 (379)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~-~~~~~~~s~~~~~~~i~~~~~g~l~d~~Gr-r~~l~~~~~~  127 (379)
                      +.+....+..++.++.......+.|.... -|+-+... ...++....+.++..+++.+.|.+..+++| |+.++++.++
T Consensus       310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~  389 (599)
T PF06609_consen  310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVL  389 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHH
Confidence            34444445556666555555556665543 34333221 122678888888889999999999988886 5555677766


Q ss_pred             HHHHHHHHhc--ccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhc
Q 016986          128 MIIGASISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG  197 (379)
Q Consensus       128 ~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  197 (379)
                      +.+++.+++.  .+|....++.-++.|++.|...........-..|+++-+.+.++....-.+|..+|..+.
T Consensus       390 ~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy  461 (599)
T PF06609_consen  390 MTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIY  461 (599)
T ss_pred             HHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            6654444333  356666677889999999998888877777788999999999998888888777766553

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.19  E-value=1.3e-05  Score=67.86  Aligned_cols=261  Identities=12%  Similarity=0.074  Sum_probs=152.8

Q ss_pred             hhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchh
Q 016986           79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLG  158 (379)
Q Consensus        79 ~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  158 (379)
                      .+-|++.++.. .=+.-+..-.+.+.-.+.=.+.|..--|++++.-.+.....-.+.-+.++.+.+-+.-++.|...+ .
T Consensus        34 p~~NlT~~~l~-~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-a  111 (433)
T KOG3810|consen   34 PDKNLTEDQLT-NEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-A  111 (433)
T ss_pred             CCCCccHHHHh-cccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-H
Confidence            44566654442 222333344455666666678999999999988777777777778889999999999999998554 4


Q ss_pred             hHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchh-hHHHHHHHHHHHHHHHHHHhhcCCChhHHHH
Q 016986          159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-WRICFWVSIVPAAILCLAMVFCAESPHWLYK  237 (379)
Q Consensus       159 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~  237 (379)
                      ..+-++++-+..+++++.++.+......-.|..+|..++..+.+.... +...-.+......+..+...++|..++....
T Consensus       112 EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f  191 (433)
T KOG3810|consen  112 EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYF  191 (433)
T ss_pred             HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhh
Confidence            557788888889999999999999999999998888888887765531 3344444444444555566777776543332


Q ss_pred             cCChHHHH-HHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHH
Q 016986          238 KGRTAEAE-AEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF  316 (379)
Q Consensus       238 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (379)
                      +.+.++.. ...+......+.....      ...-..-..++.+..+||......+...+..+    ++.-...|.+...
T Consensus       192 ~~~~~~~~v~~~e~~~~~~~~~~~l------~~~~~~l~~~l~~~y~np~ll~WSlWwAl~sc----g~~QV~nY~Q~LW  261 (433)
T KOG3810|consen  192 HRLEDKISVGDLEEMNPQASYMSYL------RGAFVLLWRDLQECYSNPRLLKWSLWWALASC----GYYQVTNYTQILW  261 (433)
T ss_pred             hcccccceeccchhcCccchhhHHH------HHHHHHHHHHHHHHhcCchhhhhHHHHHHhhc----hhHHHHHHHHHHH
Confidence            22222110 0000000000000000      00000012234455666665444333333332    2333444555544


Q ss_pred             HHc-CCC----hhHHHHHHHHHHHHHHHHHHHHHHhhCch
Q 016986          317 KSA-GLS----SGLANVFVGIANLLGSVVAMVLMDKLGRK  351 (379)
Q Consensus       317 ~~~-~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~g~~  351 (379)
                      +.. +..    .|..=+...+.++++.+..|.+.-++.|+
T Consensus       262 ~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~  301 (433)
T KOG3810|consen  262 KEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRW  301 (433)
T ss_pred             HhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchh
Confidence            443 211    34455566677788888899887766665

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.16  E-value=3.4e-05  Score=70.70  Aligned_cols=159  Identities=17%  Similarity=0.061  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHhhhhccccchhhhhhhh-ccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhcc----chhHHHHHHHhH
Q 016986           52 HVLVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRRAFQLCAL  126 (379)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~----~Grr~~l~~~~~  126 (379)
                      .+...++..++.....+.+...+|.+.++ .|.+..+.  +.+...+.++.+++.+++|+++||    ..+|......+.
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a--~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~  351 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQA--NLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLC  351 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHh--ccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            44556666677777777778888888888 34554444  788999999999999999999999    777777777666


Q ss_pred             HHHHHH-HHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCc-chhHHHHHHHHHHHHHHHH-Hhhccccccc
Q 016986          127 PMIIGA-SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV-RGTYGAFIQIATCLGLMGS-LLIGIPVKEI  203 (379)
Q Consensus       127 ~~~~~~-~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~~-~~~~~~l~~~  203 (379)
                      +..+.. +.....++.......-+....+.....+.......+....+. |-...+....+.+.+.+++ +..-+.....
T Consensus       352 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~  431 (495)
T KOG2533|consen  352 LYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPR  431 (495)
T ss_pred             HHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcc
Confidence            655544 444444444444444444444555666677777777775443 3344444555555554444 4444444444


Q ss_pred             chhhHHHHHH
Q 016986          204 AGWWRICFWV  213 (379)
Q Consensus       204 ~~~wr~~f~~  213 (379)
                      .. |...|..
T Consensus       432 y~-~~~~f~~  440 (495)
T KOG2533|consen  432 YG-WGAVFYM  440 (495)
T ss_pred             hh-hhhHHHH
Confidence            55 7778744

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.15  E-value=6.4e-05  Score=68.39  Aligned_cols=124  Identities=15%  Similarity=0.087  Sum_probs=106.2

Q ss_pred             hhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHH-hhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHh
Q 016986           75 ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSG-WIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGT  153 (379)
Q Consensus        75 ~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g-~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~  153 (379)
                      -.+...++++.++.  +...+.......+++.+.. .+...+|-|++...|+....+..+..+++++.|++.....+.++
T Consensus       266 ~yl~~~f~w~~~~~--s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~  343 (463)
T KOG2816|consen  266 LYLKAKFGWNKKEF--SDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVAL  343 (463)
T ss_pred             EEEeeecCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Confidence            34566788877776  7777777777777777777 78888999999999999999999999999999999999888887


Q ss_pred             hhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccc
Q 016986          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (379)
Q Consensus       154 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  201 (379)
                       .+...|...+.++.+..++++|++.++......+...++|.+-+.+.
T Consensus       344 -~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  344 -AGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             -hcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence             66778888999999999999999999999999999888888766554

>PTZ00207 hypothetical protein; Provisional

Probab=98.11  E-value=0.00013  Score=68.29  Aligned_cols=172  Identities=13%  Similarity=-0.038  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHhhhhccccchhhhhhhhc-cCCcchhHHHHHHHHHHHHHHHHHHhHHhhhcc---------chhHHHH
Q 016986           52 HVLVATLSSFLFGYHLGVVNEPLESISLDL-GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG---------VGRRRAF  121 (379)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~---------~Grr~~l  121 (379)
                      .+++++...++..-....+..-+.+|.+.+ |.+.+......+.+++.++.++|-+..|.++..         +.|--.+
T Consensus       354 d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l  433 (591)
T PTZ00207        354 RLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIAL  433 (591)
T ss_pred             hHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHH
Confidence            445555555554444334444566777887 653322100237888888999999998887721         2222233


Q ss_pred             HHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHH-Hhhcccc
Q 016986          122 QLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGS-LLIGIPV  200 (379)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~~~~~l  200 (379)
                      .+..+ +.++.++.++.-....+++.-++.|++.|..+++....++|+|. |+-|+-..+......+|..+- -.+.|.+
T Consensus       434 ~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~  511 (591)
T PTZ00207        434 FIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEW  511 (591)
T ss_pred             HHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence            34444 66666666665444789999999999999999999999999999 888998888888888886654 4555555


Q ss_pred             cccch----h--------hHHHHHHHHHHHHHHHHHH
Q 016986          201 KEIAG----W--------WRICFWVSIVPAAILCLAM  225 (379)
Q Consensus       201 ~~~~~----~--------wr~~f~~~~~~~~~~~~~~  225 (379)
                      .+...    .        .|..|++.+..+++..+.-
T Consensus       512 Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s  548 (591)
T PTZ00207        512 YTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITS  548 (591)
T ss_pred             HHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHH
Confidence            53321    1        6788888777666665543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.08  E-value=0.00018  Score=66.05  Aligned_cols=110  Identities=19%  Similarity=0.161  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhccchh--H----HH-HHHHhHHHHHHHHHHhcc---------cchHHHHHHHHHHHhh
Q 016986           91 GLVVSMCLGGAFIGSTLSGWIADGVGR--R----RA-FQLCALPMIIGASISATT---------RNLIGMLLGRFVVGTG  154 (379)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~d~~Gr--r----~~-l~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~~  154 (379)
                      +|..++..+...+.+|+.+++=.|.+|  |    +. +.+|+++.+++.+...++         .+.+++++..+++++|
T Consensus       311 ~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~g  390 (493)
T PRK15462        311 AMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFA  390 (493)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence            688888888888888887777555532  1    11 566777777776555321         3677888999999999


Q ss_pred             hchhhHHHHHHHHhhcCCCcchhHHHHHHHH-HHHHHHHHHhhcccc
Q 016986          155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIA-TCLGLMGSLLIGIPV  200 (379)
Q Consensus       155 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~l  200 (379)
                      +=...|+..+++++..|+|.||..+|.+... ..+|..++..+++..
T Consensus       391 El~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        391 ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999764 367777766665544

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.03  E-value=8e-05  Score=64.16  Aligned_cols=124  Identities=14%  Similarity=0.043  Sum_probs=106.1

Q ss_pred             hhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccch--hHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhc
Q 016986           79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG--RRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG  156 (379)
Q Consensus        79 ~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  156 (379)
                      +.+|.++.+.  |-+.+...+..++.+....+..||..  -+-.+..++.+..=..++.+.++....+..+-.+-.+..+
T Consensus       290 ~rfg~ss~~~--G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A  367 (451)
T KOG2615|consen  290 GRFGYSSMQQ--GKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTA  367 (451)
T ss_pred             CccCCChhhh--eeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHH
Confidence            6677776665  77777777888888888889999988  7777888888777777788889988888888889888888


Q ss_pred             hhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccc
Q 016986          157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA  204 (379)
Q Consensus       157 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  204 (379)
                      ...+....++....|+++||..+|+......++-++||+++|.+....
T Consensus       368 ~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws  415 (451)
T KOG2615|consen  368 SVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS  415 (451)
T ss_pred             HhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence            888888899999999999999999999999999999999998776543

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.97  E-value=0.00011  Score=65.84  Aligned_cols=108  Identities=11%  Similarity=0.155  Sum_probs=87.1

Q ss_pred             HHHHHHhHHHHHHHHHHhcc---cc------hHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCC---cchhHHHHHHHHH
Q 016986          119 RAFQLCALPMIIGASISATT---RN------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF---VRGTYGAFIQIAT  186 (379)
Q Consensus       119 ~~l~~~~~~~~~~~~~~~~~---~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  186 (379)
                      |+++++.++..+|.++..++   .+      .+.++++-.+.++|.|+.-|...++.+|.++++   +|.+...++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            46777888888888774333   22      367888899999999999999999999999765   4667788899999


Q ss_pred             HHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhh
Q 016986          187 CLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF  227 (379)
Q Consensus       187 ~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~  227 (379)
                      ++|..++..+.+++.++.+ |.+.|.+.++..++.++.++.
T Consensus        82 n~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHHHHh
Confidence            9999999999999999998 999999988877777665544

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.97  E-value=0.00022  Score=58.48  Aligned_cols=98  Identities=19%  Similarity=0.307  Sum_probs=69.5

Q ss_pred             ccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHH
Q 016986           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (379)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  149 (379)
                      .+|+.-.+-+.++....++  |.+.-.-+-...+...+.|-++|+-|||+.-+.-++.+.+++ +.-.++.|-.++++|+
T Consensus        56 QgPYvYyLYstYgFgkG~I--gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~  132 (454)
T KOG4332|consen   56 QGPYVYYLYSTYGFGKGDI--GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRV  132 (454)
T ss_pred             cCceeeeeehhcCccCCcc--ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhh
Confidence            3566666777888877776  555544444556777888999999999996544444433332 3456788999999999


Q ss_pred             HHHhhhchhhHHHHHH-HHhhc
Q 016986          150 VVGTGMGLGPTVAALY-VTEVS  170 (379)
Q Consensus       150 l~G~~~~~~~~~~~~~-i~~~~  170 (379)
                      +-|+..+..+....++ +.|.-
T Consensus       133 LGGiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  133 LGGIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhh
Confidence            9999998888776554 44544

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.84  E-value=0.0004  Score=61.48  Aligned_cols=130  Identities=16%  Similarity=0.105  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCC
Q 016986           93 VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP  172 (379)
Q Consensus        93 ~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  172 (379)
                      +.-+-.+...+..+.+.+..+|+..+.=...+.++..++.++.++++|.+.-+++-++.+++.|........+ +..+++
T Consensus        64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y~~  142 (402)
T PF02487_consen   64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFYGK  142 (402)
T ss_pred             HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhcCc
Confidence            3444444555666777788888765444456667888889999999999999999999999999998887776 446654


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHhhcccccccch-hhHHHHHHHHHHHHHHHHHHhhc
Q 016986          173 FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRICFWVSIVPAAILCLAMVFC  228 (379)
Q Consensus       173 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~wr~~f~~~~~~~~~~~~~~~~~  228 (379)
                          ...+.+..+.+.+.++|+..-..+.+ .+ .-|..+++.....++..+.++++
T Consensus       143 ----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~  194 (402)
T PF02487_consen  143 ----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFL  194 (402)
T ss_pred             ----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence                34677778888788888776655554 33 13666666655555555554443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.78  E-value=0.00035  Score=61.78  Aligned_cols=107  Identities=19%  Similarity=0.193  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhH--HHHHH---HHHHhcccchHHHHHHHHHHHhhhchhhHHHHHH
Q 016986           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL--PMIIG---ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY  165 (379)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~--~~~~~---~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~  165 (379)
                      .+....|.+|..++.--...+  |+  |++.+.+.+  +..+.   ....-+.++.+..++.-+..|+..|..+.-....
T Consensus       284 ~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~  359 (402)
T PF02487_consen  284 RWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYR  359 (402)
T ss_pred             HHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            566777777766554322211  33  333333322  22222   2233456889988899999999999999999999


Q ss_pred             HHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccc
Q 016986          166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (379)
Q Consensus       166 i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  201 (379)
                      +.|-.++++|..+++..+.+.++|..++.+++-.+.
T Consensus       360 I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  360 ISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988876553

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.65  E-value=0.0011  Score=62.02  Aligned_cols=174  Identities=16%  Similarity=0.197  Sum_probs=125.4

Q ss_pred             hHHHHHHHHHHHHHHhhh-hccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhcc-chhHHHHHHHhH
Q 016986           49 SFPHVLVATLSSFLFGYH-LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCAL  126 (379)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~  126 (379)
                      .|+....+.....+..+. .+.....+..+.+++|.+...+  .-..+.+.-......+..++++|- +||-+++.++.+
T Consensus        35 ~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~a--a~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~  112 (571)
T KOG1237|consen   35 GWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGA--ANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSL  112 (571)
T ss_pred             hhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHH--HHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            344443333333333332 2445667788888999876544  566777777777888999999996 589999999988


Q ss_pred             HHHHHHHHHhcccc-------------------------hHHHHHHHHHHHhhhchhhHHHHHHHHhhcC---C-C--cc
Q 016986          127 PMIIGASISATTRN-------------------------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSP---P-F--VR  175 (379)
Q Consensus       127 ~~~~~~~~~~~~~~-------------------------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~-~--~r  175 (379)
                      +..++.++...+..                         ...+..+.-+..+|.|+.-+...++-+|-++   + +  .+
T Consensus       113 i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~  192 (571)
T KOG1237|consen  113 ISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGI  192 (571)
T ss_pred             HHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCc
Confidence            88887655433211                         1245566777888999999999999999998   2 2  23


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHH
Q 016986          176 GTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (379)
Q Consensus       176 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~  225 (379)
                      ...+.++....++|..++..+..+..++.+ |.+.|.+..+...+.++++
T Consensus       193 ~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~-w~lgf~i~~~~~~lai~iF  241 (571)
T KOG1237|consen  193 PSFFNWFYFSQNGGALLAQTVLVYIQDNVG-WKLGFGIPTVLNALAILIF  241 (571)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhhhccc-ceeeccHHHHHHHHHHHHH
Confidence            367888999999999999999888888888 9999988766666555544

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.60  E-value=0.00036  Score=46.25  Aligned_cols=65  Identities=9%  Similarity=0.087  Sum_probs=45.2

Q ss_pred             HHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHH
Q 016986          295 TLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS  360 (379)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~  360 (379)
                      ++++....+...+++.|+.+ .+.+..+.|.+..+..+..+++.++.|.++||.++++.......+
T Consensus        10 f~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   10 FFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            34444444444444554443 344555677888899999999999999999999998877655544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.46  E-value=0.0088  Score=53.97  Aligned_cols=108  Identities=16%  Similarity=0.059  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhccchhH-------HHHHHHhHHHHHHHHHHhcc----------cchHHHHHHHHHHHh
Q 016986           91 GLVVSMCLGGAFIGSTLSGWIADGVGRR-------RAFQLCALPMIIGASISATT----------RNLIGMLLGRFVVGT  153 (379)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~d~~Grr-------~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l~G~  153 (379)
                      ++..+...+.-.+.+++..++-.+.++|       .=+-+|+.+.+.+.++....          .+.++++...+++++
T Consensus       327 ~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~  406 (498)
T COG3104         327 AWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSF  406 (498)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            5888888888888888888877775544       22344555555555544332          367889999999999


Q ss_pred             hhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcc
Q 016986          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI  198 (379)
Q Consensus       154 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  198 (379)
                      |+=+..|+..++++...|++-.+.+++.+-.....|..++..+.+
T Consensus       407 gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         407 GELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             HHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence            999999999999999999999999999988888888887777766

>PRK03612 spermidine synthase; Provisional

Probab=97.29  E-value=0.033  Score=52.05  Aligned_cols=139  Identities=14%  Similarity=0.007  Sum_probs=77.0

Q ss_pred             hccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhH-HHH-HHH-HH---HhcccchH-HHHHHHHHHH
Q 016986           80 DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL-PMI-IGA-SI---SATTRNLI-GMLLGRFVVG  152 (379)
Q Consensus        80 ~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~-~~~-~~~-~~---~~~~~~~~-~l~~~r~l~G  152 (379)
                      -+|-+...  .+.+.+++..|.++|+.+.+++.++.-|+...+-..+ +.+ ++. ++   .++...+. .++..-++.+
T Consensus        44 ~~G~s~~~--~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~  121 (521)
T PRK03612         44 LLGDSVTQ--FSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIG  121 (521)
T ss_pred             HhCchHHH--HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34443333  3899999999999999999988744333322211111 111 111 11   11111111 1223345667


Q ss_pred             hhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccc-ccchhhHHHHHHHHHHHHHH
Q 016986          153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-EIAGWWRICFWVSIVPAAIL  221 (379)
Q Consensus       153 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~~wr~~f~~~~~~~~~~  221 (379)
                      +..|...|....+..+... ++-++..|-......+|+++|.++.+.+. ...|..+..+.++.+..++.
T Consensus       122 ~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a  190 (521)
T PRK03612        122 LLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA  190 (521)
T ss_pred             HHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            7777777777666655332 23456677777888888888888766554 35554566555544443333

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=97.25  E-value=0.083  Score=45.13  Aligned_cols=99  Identities=17%  Similarity=0.148  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCC--Cc
Q 016986           97 CLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP--FV  174 (379)
Q Consensus        97 ~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~  174 (379)
                      ..+.....+.+.+.+..++|-|+++.++....... +..-+-+.+..++-.-...|++.++.+..--+|+++.-..  ++
T Consensus        67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~  145 (390)
T KOG3097|consen   67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQ  145 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHh
Confidence            34455567777779999999999998887776553 3333456788889999999999999887777777665532  33


Q ss_pred             c-------------hhHHHHHHHHHHHHHHHHHhh
Q 016986          175 R-------------GTYGAFIQIATCLGLMGSLLI  196 (379)
Q Consensus       175 r-------------~~~~~~~~~~~~~g~~~~~~~  196 (379)
                      |             +....+++....+|..+...+
T Consensus       146 ~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli  180 (390)
T KOG3097|consen  146 RGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI  180 (390)
T ss_pred             hhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence            3             344556666666676665554

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=0.039  Score=50.08  Aligned_cols=106  Identities=14%  Similarity=0.102  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHhHHhhhc---cchhHHHHHHHhHHHHHHHHHHhcc------------------cchHHHHHHHHHHH
Q 016986           94 VSMCLGGAFIGSTLSGWIAD---GVGRRRAFQLCALPMIIGASISATT------------------RNLIGMLLGRFVVG  152 (379)
Q Consensus        94 ~s~~~~~~~i~~~~~g~l~d---~~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G  152 (379)
                      .-...++..+++.+.+.+++   ++||++.+.++..+..++.++.-.+                  +++....+.-++.|
T Consensus       285 ~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G  364 (461)
T KOG3098|consen  285 SIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLG  364 (461)
T ss_pred             HHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHh
Confidence            33344555566666777775   5899999999998888887775543                  24567777889999


Q ss_pred             hhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccc
Q 016986          153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (379)
Q Consensus       153 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  200 (379)
                      ++-+......+.++.+.+ +++|..+.+++..-..++..++....+..
T Consensus       365 ~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  365 FGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL  411 (461)
T ss_pred             hHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            999999999999999999 57789999998888888877766555443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.09  E-value=0.013  Score=52.92  Aligned_cols=146  Identities=13%  Similarity=0.115  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHH
Q 016986           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (379)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~  133 (379)
                      +...++..+-+++.-.....+..+...-|+++...  |..-+.-.+....+.+...++.+|+|..+.=+.+.....+...
T Consensus       261 flas~alalLY~TVLsf~~lmt~yl~~~G~s~~~i--gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~  338 (432)
T PF06963_consen  261 FLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVI--GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLA  338 (432)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence            34444444444443334555555555558887777  8888888888899999999999999988887777665443333


Q ss_pred             HHh------ccc----chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccc
Q 016986          134 ISA------TTR----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (379)
Q Consensus       134 ~~~------~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  201 (379)
                      ++.      -++    +...++.+-.+.=+|.=.+-....-++.|..|+++||...|.-....++-.++-..++-.+.
T Consensus       339 ~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~  416 (432)
T PF06963_consen  339 LCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP  416 (432)
T ss_pred             HHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            322      112    22223333333333333445566778899999999999999999888888777766655443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=96.92  E-value=0.056  Score=47.88  Aligned_cols=93  Identities=11%  Similarity=-0.032  Sum_probs=46.5

Q ss_pred             chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Q 016986          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA  219 (379)
Q Consensus       140 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~  219 (379)
                      .+...++.-.+.+.+.|..........++. |++.-+..++=.+.+..+-+++--+......+...+=-..|.++.+..+
T Consensus       116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~l  194 (406)
T KOG1479|consen  116 FFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILL  194 (406)
T ss_pred             hHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHH
Confidence            355566667777888877777666666654 4444332222222222222221112222222222212344555666666


Q ss_pred             HHHHHHhhcCCChh
Q 016986          220 ILCLAMVFCAESPH  233 (379)
Q Consensus       220 ~~~~~~~~~~e~p~  233 (379)
                      ++++.+..+|..|-
T Consensus       195 lC~i~y~~l~~lpf  208 (406)
T KOG1479|consen  195 LCFVLYLVLPKLPF  208 (406)
T ss_pred             HHHHHHHHhhcchH
Confidence            77777777777664

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=96.90  E-value=0.0077  Score=54.31  Aligned_cols=143  Identities=13%  Similarity=0.042  Sum_probs=77.2

Q ss_pred             HHHHHHHHHhhhhccccchhhhhhhh--ccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhc-----cchhHHHHHH-HhH
Q 016986           55 VATLSSFLFGYHLGVVNEPLESISLD--LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-----GVGRRRAFQL-CAL  126 (379)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d-----~~Grr~~l~~-~~~  126 (379)
                      ++.+.+++.+.-.+.....+|.+.++  -+.+.++.  |..+ ....-+ -.-++|.++.|     |+||||..++ .-.
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~--~~fS-la~~Pf-SlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~   79 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQ--AIFS-LASYPF-SLKLLWAPIVDSVYSKRIGRRKSWIIPIQY   79 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhccccCCCChhHh--eeee-eeechh-HHHHhhhhhhhhhcccccCCcchhhhHHHH
Confidence            44555666666666555567877777  56665554  3221 111111 12345666665     8999988766 333


Q ss_pred             HHHHHHHHHhccc----------------------c--hHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHH
Q 016986          127 PMIIGASISATTR----------------------N--LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFI  182 (379)
Q Consensus       127 ~~~~~~~~~~~~~----------------------~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~  182 (379)
                      +.++..+..+..-                      +  ...+....++.=+-.+.--.+.-.+.-....+++++.+....
T Consensus        80 l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcq  159 (544)
T PF13000_consen   80 LSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQ  159 (544)
T ss_pred             HHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHH
Confidence            4444333333221                      1  112223332222223332233334444556778899999888


Q ss_pred             HHHHHHHHHHHHhhccccc
Q 016986          183 QIATCLGLMGSLLIGIPVK  201 (379)
Q Consensus       183 ~~~~~~g~~~~~~~~~~l~  201 (379)
                      ..+.+.|..++..+--.+.
T Consensus       160 tvG~~~Gyfls~tvFlaln  178 (544)
T PF13000_consen  160 TVGQTAGYFLSFTVFLALN  178 (544)
T ss_pred             HhHhhhhHHHHHHHHHhhC
Confidence            8888888888776654444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.90  E-value=0.022  Score=51.98  Aligned_cols=89  Identities=12%  Similarity=0.009  Sum_probs=47.8

Q ss_pred             chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhc----ccccccc-hhh--HHHHH
Q 016986          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG----IPVKEIA-GWW--RICFW  212 (379)
Q Consensus       140 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~l~~~~-~~w--r~~f~  212 (379)
                      .++..++.-++.|++.+.......++.+ .+|++.    +..+..+.+++.+++.++-    ....+.. ..+  ...|.
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~  179 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG  179 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence            4666667778889988888877777666 455443    4444444444444433321    1111210 102  23344


Q ss_pred             HHHHHHHHHHHHHhhcCCChh
Q 016986          213 VSIVPAAILCLAMVFCAESPH  233 (379)
Q Consensus       213 ~~~~~~~~~~~~~~~~~e~p~  233 (379)
                      ++.+..+++++.+..++..|.
T Consensus       180 ~a~~v~l~~i~~~~~l~k~~~  200 (437)
T TIGR00939       180 TPCVVQLICIVCYLLLPKLPF  200 (437)
T ss_pred             HHHHHHHHHHHHHHHHhcCHH
Confidence            455556666666666776654

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=96.89  E-value=0.0057  Score=50.30  Aligned_cols=56  Identities=11%  Similarity=0.056  Sum_probs=35.6

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHhh--cc-cccc-cchhhHHHHHHHHHHHHHHHHHHhhc
Q 016986          173 FVRGTYGAFIQIATCLGLMGSLLI--GI-PVKE-IAGWWRICFWVSIVPAAILCLAMVFC  228 (379)
Q Consensus       173 ~~r~~~~~~~~~~~~~g~~~~~~~--~~-~l~~-~~~~wr~~f~~~~~~~~~~~~~~~~~  228 (379)
                      |+|+....+...++++|.++....  -. -..+ ....|++.+.+.+++.++.++++..+
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567777777788888887665433  22 1111 11239999988887777666665544

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.86  E-value=0.015  Score=53.18  Aligned_cols=147  Identities=14%  Similarity=0.070  Sum_probs=101.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhc-c---------cchHHHHHHHHHHH
Q 016986           83 FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-T---------RNLIGMLLGRFVVG  152 (379)
Q Consensus        83 ~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~-~---------~~~~~l~~~r~l~G  152 (379)
                      .++...  +.+..+..++..++..+.....-+..-|+++..+.++.++..+.-.. .         ++.+-.+.--++..
T Consensus       252 fs~~f~--~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~  329 (433)
T PF03092_consen  252 FSPSFY--GTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEE  329 (433)
T ss_pred             cCHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHH
Confidence            444333  77777778888888888888888888899888888777766554221 1         12222333456666


Q ss_pred             hhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchh-------hHHHHHHHHHHHHHHHHHH
Q 016986          153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-------WRICFWVSIVPAAILCLAM  225 (379)
Q Consensus       153 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-------wr~~f~~~~~~~~~~~~~~  225 (379)
                      +.....+-....+++|..|+..-|...++.....++|..++..++..+.+..+.       -.+..++..+..++.+.+.
T Consensus       330 ~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll  409 (433)
T PF03092_consen  330 VIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLL  409 (433)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence            666667777788999999999999999999999999998888888877654431       1223334445555555555


Q ss_pred             hhcCCC
Q 016986          226 VFCAES  231 (379)
Q Consensus       226 ~~~~e~  231 (379)
                      .++|++
T Consensus       410 ~lLp~~  415 (433)
T PF03092_consen  410 FLLPPQ  415 (433)
T ss_pred             HHcCCC
Confidence            567765

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.77  E-value=0.012  Score=53.45  Aligned_cols=68  Identities=16%  Similarity=0.093  Sum_probs=56.7

Q ss_pred             HhHHHHHHHcCCC-hhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016986          310 YFSSSVFKSAGLS-SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEAFLVL  377 (379)
Q Consensus       310 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~  377 (379)
                      .++...++.+..+ .|.+......+..+..+.+|++.||+|.|+.+.++.+...+..++..+.+++..+
T Consensus        50 p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L  118 (511)
T TIGR00806        50 PYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHM  118 (511)
T ss_pred             HHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555566 7789999999999999999999999999999999999999999999888776543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=96.71  E-value=0.008  Score=53.62  Aligned_cols=90  Identities=16%  Similarity=0.156  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHhhchhHHHHhHH---HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Q 016986          289 VVFIGSTLFALQQLSGINAIFYFSS---SVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICS  365 (379)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~  365 (379)
                      ...+...+....++.=-..++.-.+   +.++......|++.....++..+.++++|++.||++|++++.+|..+..++.
T Consensus        33 ~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av  112 (493)
T KOG1330|consen   33 LTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAV  112 (493)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHH
Confidence            3333344444444444444444333   3344455567899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhc
Q 016986          366 SISLILEAFLVLV  378 (379)
Q Consensus       366 ~~~~~~~~~~~~~  378 (379)
                      +...+...+|.+.
T Consensus       113 ~~~~fs~~Fwq~~  125 (493)
T KOG1330|consen  113 FASGFSNHFWQVL  125 (493)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998888764

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.53  E-value=0.0016  Score=58.98  Aligned_cols=98  Identities=10%  Similarity=0.119  Sum_probs=70.1

Q ss_pred             hhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHH
Q 016986          280 ELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF  359 (379)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~  359 (379)
                      +++.++....+++...++.+......+.+-.++++. +....--|......-.+.++..+..+++.+|+|+-+++.+++.
T Consensus       366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~-~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa  444 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDL-GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLA  444 (618)
T ss_pred             HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhh
Confidence            566777766666666666655555455554444443 2223334567777778888999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHhhhhc
Q 016986          360 SMVICSSISLILEAFLVLV  378 (379)
Q Consensus       360 ~~~i~~~~~~~~~~~~~~~  378 (379)
                      ...+=++.....++.|+++
T Consensus       445 ~~~~Rf~~~S~L~n~W~vL  463 (618)
T KOG3762|consen  445 CNVGRFLYYSYLQNPWMVL  463 (618)
T ss_pred             HHHHHHHHHHHhcCchhee
Confidence            8888888888888877654

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.45  E-value=0.078  Score=48.41  Aligned_cols=107  Identities=13%  Similarity=0.045  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhccchhH--HHHHHHhH--HHHHHHHHHhc---------ccchHHHHHHHHHHHhhhch
Q 016986           91 GLVVSMCLGGAFIGSTLSGWIADGVGRR--RAFQLCAL--PMIIGASISAT---------TRNLIGMLLGRFVVGTGMGL  157 (379)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~d~~Grr--~~l~~~~~--~~~~~~~~~~~---------~~~~~~l~~~r~l~G~~~~~  157 (379)
                      -+....|.++-.+|..+..+.. .-++|  .+++.+..  ++.-..++|..         -++-+..++.-++.|+..|-
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            4567777788788777554321 11222  33332222  22222233322         24556677789999999999


Q ss_pred             hhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcc
Q 016986          158 GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI  198 (379)
Q Consensus       158 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  198 (379)
                      ..+.+..+..+..++++|..+..+...+..+|..+|..++-
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888887654

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.34  E-value=0.0062  Score=54.13  Aligned_cols=151  Identities=16%  Similarity=0.100  Sum_probs=86.7

Q ss_pred             hhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchh-HHHHHHHhHHHHHHHHHHhc-c---cchHHHHHHHHHHHh
Q 016986           79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRAFQLCALPMIIGASISAT-T---RNLIGMLLGRFVVGT  153 (379)
Q Consensus        79 ~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Gr-r~~l~~~~~~~~~~~~~~~~-~---~~~~~l~~~r~l~G~  153 (379)
                      ..-|.++...  |++.....++..+++.+.|.+.||... |.++++......++...... .   .+.+.+...-.+.|.
T Consensus       294 ~~sgY~~~~a--G~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~  371 (480)
T KOG2563|consen  294 CPSGYEGVFA--GYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGF  371 (480)
T ss_pred             ccccCCcccc--chhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHH
Confidence            3334443333  899999999999999999999999864 66666666665555322222 1   233445556677888


Q ss_pred             hhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch--hhHHHH-HHHHHHHHHHHHHHhhcCC
Q 016986          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG--WWRICF-WVSIVPAAILCLAMVFCAE  230 (379)
Q Consensus       154 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~wr~~f-~~~~~~~~~~~~~~~~~~e  230 (379)
                      +....+|+..-+-.|..-|..-+.-.|+.+....+-..+-..+-+...+..+  +|.... +......++.+++..+++|
T Consensus       372 ~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~  451 (480)
T KOG2563|consen  372 FGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRP  451 (480)
T ss_pred             hhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhh
Confidence            8888899888888886644444455555544333333333333333333222  133322 2233334444444555555


Q ss_pred             C
Q 016986          231 S  231 (379)
Q Consensus       231 ~  231 (379)
                      +
T Consensus       452 ~  452 (480)
T KOG2563|consen  452 D  452 (480)
T ss_pred             h
Confidence            4

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.20  E-value=0.01  Score=53.88  Aligned_cols=76  Identities=13%  Similarity=0.190  Sum_probs=59.0

Q ss_pred             HHHH-HHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Q 016986          144 MLLG-RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI  220 (379)
Q Consensus       144 l~~~-r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~  220 (379)
                      ++++ -++.|.+.-.......++-+|...+++++.+.++++.....+..++|++........| .|+.+.+.+...++
T Consensus       390 ~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g-~~~v~~~~~~~~l~  466 (488)
T KOG2325|consen  390 YLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG-PRPVWIILLCLLLV  466 (488)
T ss_pred             heeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC-ccHHHHHHHHHHHH
Confidence            3444 3455776666666778899999999999999999999999999999999888888887 57666664444333

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=95.98  E-value=0.042  Score=36.92  Aligned_cols=61  Identities=15%  Similarity=0.162  Sum_probs=52.1

Q ss_pred             HcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016986          318 SAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEAFLVLV  378 (379)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  378 (379)
                      .+..+.+++.....++..+|.+...++.++.++++.+..+.+...+..+.+.+.++.+...
T Consensus        24 ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~   84 (85)
T PF06779_consen   24 LSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS   84 (85)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence            3444567899999999999999999999998888999999999999999999988877543

Note that many members are hypothetical proteins.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.76  E-value=0.0025  Score=59.60  Aligned_cols=151  Identities=17%  Similarity=0.231  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHhhhhccccchhh-hhhhhccCCcchhHHHHHHHHHHH-HHHHHHHhHHhhhccch--hHHHHHHHhH
Q 016986           51 PHVLVATLSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLG-GAFIGSTLSGWIADGVG--RRRAFQLCAL  126 (379)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~s~~~~-~~~i~~~~~g~l~d~~G--rr~~l~~~~~  126 (379)
                      +.++...++.....+....+..++| .++.+|+.+.+++  +++.++..+ +.++|.+++|.+..|+.  .|..+..+.+
T Consensus       305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A--~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v  382 (539)
T PF03137_consen  305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQA--SLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIV  382 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHH
Confidence            3445555566666665555666666 4567899987777  566655554 66799999999999875  4454444444


Q ss_pred             HHHHHHHHHh---c--c-------------------------------------------------cchHHHHHHHHHHH
Q 016986          127 PMIIGASISA---T--T-------------------------------------------------RNLIGMLLGRFVVG  152 (379)
Q Consensus       127 ~~~~~~~~~~---~--~-------------------------------------------------~~~~~l~~~r~l~G  152 (379)
                      ...+..+...   +  +                                                 +++..+++..++.-
T Consensus       383 ~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~  462 (539)
T PF03137_consen  383 VSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILS  462 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHH
Confidence            4333332200   0  0                                                 01222333333333


Q ss_pred             hhhchhhHHHHHHHHhhcCCCcchhHHHHHHHH-HHHHHHHHHhhccccccc
Q 016986          153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIA-TCLGLMGSLLIGIPVKEI  203 (379)
Q Consensus       153 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~l~~~  203 (379)
                      +..+...+.....+-...|+++|+.++|+.... -.+|.+=||++-|.+.+.
T Consensus       463 ~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  463 FFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ----------------------------------------------------
T ss_pred             HHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            334444444445555777888999999987644 345677778777777664

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=95.76  E-value=0.14  Score=37.96  Aligned_cols=43  Identities=23%  Similarity=0.267  Sum_probs=30.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Q 016986          323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICS  365 (379)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~  365 (379)
                      .+.......++..++..+.+.+.|..+.+....+......++.
T Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (141)
T TIGR00880        89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAF  131 (141)
T ss_pred             HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHH
Confidence            4466677788888999999999998887666555444444433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=95.32  E-value=0.02  Score=55.04  Aligned_cols=59  Identities=27%  Similarity=0.172  Sum_probs=51.1

Q ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHH
Q 016986          313 SSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLIL  371 (379)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~  371 (379)
                      ...++.+..+.|++...+.++.+++.++.+++.||.|||+.+.++.++++++.+++.+.
T Consensus        60 ek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alp  118 (633)
T TIGR00805        60 ERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLP  118 (633)
T ss_pred             hhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhCh
Confidence            34455566677888899999999999999999999999999999999999999887765

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=95.31  E-value=0.086  Score=45.87  Aligned_cols=54  Identities=11%  Similarity=-0.024  Sum_probs=42.7

Q ss_pred             HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Q 016986          316 FKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISL  369 (379)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~  369 (379)
                      ++....+.+.++..-.....+...+.|.+.||+|||+..+..+++..++++...
T Consensus        64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~  117 (354)
T PF05631_consen   64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH  117 (354)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh
Confidence            344444566777777788888888999999999999999998888888886543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.29  E-value=0.73  Score=41.37  Aligned_cols=94  Identities=14%  Similarity=0.006  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhccchhHHHHHH--HhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHh
Q 016986           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL--CALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (379)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~--~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  168 (379)
                      |.+-++..+..+++.+..|++..++.+..-+.+  ..++.+...++++..+|.+..+++.++.+...-...++...-++.
T Consensus       288 G~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~  367 (412)
T PF01770_consen  288 GAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAK  367 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888899999999999999999888887544444  344455566778899999999999988888788888888888888


Q ss_pred             hcCCCcchhHHHHHHH
Q 016986          169 VSPPFVRGTYGAFIQI  184 (379)
Q Consensus       169 ~~~~~~r~~~~~~~~~  184 (379)
                      ....+.-+...|+...
T Consensus       368 ~l~~e~yaLVFGiNtf  383 (412)
T PF01770_consen  368 NLSEERYALVFGINTF  383 (412)
T ss_pred             hccccceeeeeeeHHH
Confidence            8877777777766544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=94.98  E-value=0.0084  Score=52.13  Aligned_cols=108  Identities=19%  Similarity=0.226  Sum_probs=3.8

Q ss_pred             HHHHHHHHHHHHHHHhHHhhhcc-chhHHHHHHHhH-HHHHHHH-HHh----------cccchHHHHHHHHHHHhhhchh
Q 016986           92 LVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCAL-PMIIGAS-ISA----------TTRNLIGMLLGRFVVGTGMGLG  158 (379)
Q Consensus        92 ~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~-~~~~~~~-~~~----------~~~~~~~l~~~r~l~G~~~~~~  158 (379)
                      .....|.++-.+|....++.--+ -.+|++.+.+.. +..+..+ +|-          ..+|-+..++.-++.|+..|-.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            34667888888888877653211 134444433221 1112222 221          2234466777789999999999


Q ss_pred             hHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccc
Q 016986          159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (379)
Q Consensus       159 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  199 (379)
                      .+..+.+..+..++++|..+..+......+|..+|..++-.
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             -HHHH------------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888888888888888776543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=93.63  E-value=0.75  Score=38.43  Aligned_cols=68  Identities=15%  Similarity=0.162  Sum_probs=51.9

Q ss_pred             hchhHHHHhHHHHHHHcCCChh---HHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHH
Q 016986          303 SGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLIL  371 (379)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~  371 (379)
                      +....++.|.++..+..+.+..   .+.....++..+| +..|.+.|++|++..+.+|.+...++..++...
T Consensus        16 Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~   86 (250)
T PF06813_consen   16 GTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLA   86 (250)
T ss_pred             CcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            3455677888887777666654   4455556666654 788999999999999999999999998877664

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=93.46  E-value=0.95  Score=40.39  Aligned_cols=106  Identities=16%  Similarity=0.091  Sum_probs=74.1

Q ss_pred             HHHHHH-HHHHHHHHHHhHHhhhccchhHHHHHHHhH-HHHHHHHHH-------hcccchHHHHHHHHHHHhhhchhhHH
Q 016986           91 GLVVSM-CLGGAFIGSTLSGWIADGVGRRRAFQLCAL-PMIIGASIS-------ATTRNLIGMLLGRFVVGTGMGLGPTV  161 (379)
Q Consensus        91 ~~~~s~-~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~-~~~~~~~~~-------~~~~~~~~l~~~r~l~G~~~~~~~~~  161 (379)
                      -++..+ |.+...+|.+.+.++-+.= ||...+..+. ...+-.+..       .+-.+-+++++.-.+.|+..|=....
T Consensus       285 ~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl  363 (406)
T KOG1479|consen  285 LLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSL  363 (406)
T ss_pred             HHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhh
Confidence            455556 7888888877766665554 3433333322 333333332       23456677888899999999988888


Q ss_pred             HHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhc
Q 016986          162 AALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG  197 (379)
Q Consensus       162 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  197 (379)
                      .+.+..+-.+++++-.+..+.......|..+|..++
T Consensus       364 ~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  364 IMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             eehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            899999999999988888888888888877777653

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=92.86  E-value=0.03  Score=48.69  Aligned_cols=20  Identities=10%  Similarity=0.277  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 016986          325 LANVFVGIANLLGSVVAMVL  344 (379)
Q Consensus       325 ~~~~~~~~~~~~~~~~~g~l  344 (379)
                      ..+..++++..+|+.+.++.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~  205 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWP  205 (309)
T ss_dssp             --------------------
T ss_pred             HHHHHHHHHHHhcchhccee
Confidence            45678899999999988874

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=92.39  E-value=5.5  Score=32.91  Aligned_cols=37  Identities=11%  Similarity=0.099  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHH
Q 016986          332 IANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSIS  368 (379)
Q Consensus       332 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~  368 (379)
                      +|..++-+-+-+++.|+.-|.+..++.+++.+..+..
T Consensus       251 lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl~~  287 (294)
T KOG2881|consen  251 LCTGLAVIGGKYLASKISVRTVTLIGGILFIIFGLVY  287 (294)
T ss_pred             HHHHHHHhhhHHHhhhheeEEEEEecchhHHHHHHHH
Confidence            3444444444557788888887777777766654433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=92.26  E-value=0.1  Score=46.77  Aligned_cols=127  Identities=16%  Similarity=-0.057  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcC
Q 016986           92 LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP  171 (379)
Q Consensus        92 ~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~  171 (379)
                      |-..++.+...+.+....+++||+|-|+.+..+...+.++..+.+..++.......|-..|+-.+....+....++++.-
T Consensus       336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~  415 (498)
T KOG0637|consen  336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAI  415 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHH
Confidence            33455555666999999999999998877888888788888888999999988888888886666665555555554432


Q ss_pred             CC-----------------------cchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Q 016986          172 PF-----------------------VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA  218 (379)
Q Consensus       172 ~~-----------------------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~  218 (379)
                      .+                       .+|...|+.++...+-.++..+..|.+.+..|+=+.+-+..+..+
T Consensus       416 ~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s  485 (498)
T KOG0637|consen  416 LGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVA  485 (498)
T ss_pred             hCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHH
Confidence            11                       235666677777777777777777777766654455444444333

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=88.10  E-value=12  Score=31.67  Aligned_cols=132  Identities=14%  Similarity=0.086  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhccchhH--HHHHHHhHHHHHHHHH----Hhcccc---hHHHHHHHHHHHhhhchhhHH
Q 016986           91 GLVVSMCLGGAFIGSTLSGWIADGVGRR--RAFQLCALPMIIGASI----SATTRN---LIGMLLGRFVVGTGMGLGPTV  161 (379)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~d~~Grr--~~l~~~~~~~~~~~~~----~~~~~~---~~~l~~~r~l~G~~~~~~~~~  161 (379)
                      |.+.+.++++..+|+-+..++..|-..|  +.+.+..+..+....+    ...+++   ...-+++..+.-.+.|..+|.
T Consensus       285 GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPS  364 (454)
T KOG4332|consen  285 GFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPS  364 (454)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchH
Confidence            7899999999999999998888765544  3333333333332222    222322   222234444555568889999


Q ss_pred             HHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Q 016986          162 AALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (379)
Q Consensus       162 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~  223 (379)
                      ...+=+++.|++.|+..+.++..-.++-..++...--.-....+ -|..|-++.....+..+
T Consensus       365 imkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~-tr~mf~icS~~~~~a~i  425 (454)
T KOG4332|consen  365 IMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTT-TRNMFGICSAFLFVASI  425 (454)
T ss_pred             HHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccc-cchhhhhhHHHHHHHHH
Confidence            99999999999999999988766555433222211000011122 46777776555555433

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=88.09  E-value=2.9  Score=35.88  Aligned_cols=141  Identities=13%  Similarity=0.067  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHhhhhccccch--hhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHH------HHHHHh
Q 016986           54 LVATLSSFLFGYHLGVVNEP--LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR------AFQLCA  125 (379)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~------~l~~~~  125 (379)
                      +-.+..++..++....+...  .|. .+.+..+.+. ++=|....|.+|..+.     +=+-++=+-+      ++-.-.
T Consensus       254 vPL~~VY~~EY~INQGl~ell~F~c-~~g~sls~~s-qYRwyqvlYQlGVFiS-----RSS~~~~~~p~l~~LailQ~vN  326 (409)
T KOG3880|consen  254 VPLALVYFAEYFINQGLAELLLFPC-SHGFSLSKDS-QYRWYQVLYQLGVFIS-----RSSINLFTMPYLWLLAILQFVN  326 (409)
T ss_pred             HHHHHHHHHHHHHhhhhHhhEEecc-ccCCccchhh-cchhhheeeeeeEEEE-----eccceEEechHHHHHHHHHHHH
Confidence            34445555554433322222  122 3444444322 2357788887763322     2222222211      112223


Q ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccc
Q 016986          126 LPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (379)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  201 (379)
                      .++.+...+..+.++++...+.-+..|+-.|..+.-..--+.+-.++++|-.+++....+-.+|..++.+++-.+-
T Consensus       327 l~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh  402 (409)
T KOG3880|consen  327 LLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH  402 (409)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence            3444555567788999998888999999888888888777777778899999999999999999988888776553

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=86.52  E-value=13  Score=28.58  Aligned_cols=48  Identities=13%  Similarity=0.063  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHH
Q 016986          325 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILE  372 (379)
Q Consensus       325 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~  372 (379)
                      .-..+......++.++.+.+.+++|.|+.++++.+...+-.......+
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~   88 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPN   88 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence            345556666778888899999999999999999888776655544433

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=86.48  E-value=8.8  Score=35.51  Aligned_cols=46  Identities=15%  Similarity=0.228  Sum_probs=37.7

Q ss_pred             HHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHH
Q 016986          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL  190 (379)
Q Consensus       145 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  190 (379)
                      ++.-++..+.....+....++-+.+.+|..=|..|.+.+...++|.
T Consensus       409 I~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGG  454 (544)
T PF13000_consen  409 IIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGG  454 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCC
Confidence            3446777777777788888999999999999999999998887764

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=86.43  E-value=1.8  Score=41.92  Aligned_cols=69  Identities=9%  Similarity=0.080  Sum_probs=46.5

Q ss_pred             hhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHHHHHHH
Q 016986          302 LSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMVICSSISLI  370 (379)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~  370 (379)
                      ++....+..|+...++.....+......+....-+..+++|++.|+ +|+++.+.++.++..++..++.+
T Consensus         4 YGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai   73 (654)
T TIGR00926         4 YGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF   73 (654)
T ss_pred             eecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            3444455566655444443334445555555556777888999997 69999999999988888877765

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=82.34  E-value=25  Score=28.50  Aligned_cols=38  Identities=13%  Similarity=0.044  Sum_probs=21.0

Q ss_pred             hhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch
Q 016986          168 EVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (379)
Q Consensus       168 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (379)
                      |....|++.+.-........++..+|..+++.+.+..+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~  190 (209)
T PF06912_consen  153 RYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRLG  190 (209)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44434444334444455555666667777776666555

The function of this family is unknown although a few members are thought to be membrane proteins.

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.25  E-value=12  Score=26.26  Aligned_cols=40  Identities=18%  Similarity=0.136  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHHHHHHH
Q 016986          331 GIANLLGSVVAMVLMDKL-GRKALLQWSFFSMVICSSISLI  370 (379)
Q Consensus       331 ~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~  370 (379)
                      .+.+++-....||+.||+ |.+++-++.+.+.+.+..++.+
T Consensus        52 fIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv   92 (116)
T COG5336          52 FISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNV   92 (116)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            344445555677888886 5566655555555555544443

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=81.28  E-value=11  Score=31.64  Aligned_cols=99  Identities=11%  Similarity=0.104  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHhHHhhhcc-chhHHHHH----HHhHHHHHHHHHH-hcc--c--chHHHHHHHHHHHhhhchhhHH
Q 016986           92 LVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQ----LCALPMIIGASIS-ATT--R--NLIGMLLGRFVVGTGMGLGPTV  161 (379)
Q Consensus        92 ~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~----~~~~~~~~~~~~~-~~~--~--~~~~l~~~r~l~G~~~~~~~~~  161 (379)
                      ...-++..|..+|.+..|++... +-||+.+.    .+.++..+..+.. ...  +  ++..+++.-++.|++.=+.+++
T Consensus       145 ~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~V  224 (267)
T PF07672_consen  145 IFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGV  224 (267)
T ss_pred             HHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            44555666667777777877774 44555443    2233333333332 111  1  3566777778888765444444


Q ss_pred             HHHHHHhhcCCCcchhHHHHHHHHHHHHHH
Q 016986          162 AALYVTEVSPPFVRGTYGAFIQIATCLGLM  191 (379)
Q Consensus       162 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  191 (379)
                      .. .+.+-++..++.+..-.++..+++|.+
T Consensus       225 iL-~lPhEyK~~~pk~ig~~Fg~iWGfGY~  253 (267)
T PF07672_consen  225 IL-NLPHEYKGYNPKKIGIQFGLIWGFGYI  253 (267)
T ss_pred             Hh-cChhhhcCCCcceehhHHHHHHHHHHH
Confidence            43 344444444444444455556666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	379
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		5e-28

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score =  122 bits (305), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 157/347 (45%), Gaps = 38/347 (10%)
Query: 41  NTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISL------DLGFNGNTLAEGLVV 94
           NT  +    F   LVATL   LFGY   V++  +ES++       +L  +      G  V
Sbjct: 2   NTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCV 61
Query: 95  SMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA---------TTRNLIGML 145
           +  L G  IG  L G+ ++  GRR + ++ A+   I    SA            N + + 
Sbjct: 62  ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVY 121
Query: 146 LG---------RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI 196
           L          R + G G+GL   ++ +Y+ E++P  +RG   +F Q A   G +    +
Sbjct: 122 LAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCV 181
Query: 197 G--IPVKEIAGW-----WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFE 249
              I     A W     WR  F    +PA +  + +    ESP WL  +G+  +AE    
Sbjct: 182 NYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILR 241
Query: 250 KLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIF 309
           K++G +    ++ E+      D G       L++G    V+ IG  L   QQ  GIN + 
Sbjct: 242 KIMGNTLATQAVQEIK--HSLDHGRKTGGRLLMFG--VGVIVIGVMLSIFQQFVGINVVL 297
Query: 310 YFSSSVFKSAGLSSGLA---NVFVGIANLLGSVVAMVLMDKLGRKAL 353
           Y++  VFK+ G S+ +A    + VG+ NL  +V+A++ +DK GRK L
Sbjct: 298 YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL 344
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	379
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-04
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	3e-04
2cfq_A	417	Lactose permease; transport, transport mechanism,	5e-04

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 51/358 (14%), Positives = 99/358 (27%), Gaps = 15/358 (4%)

Query: 29  TTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTL 88
           T+   Q+   V+      +       +     FL+     + +  L        F     
Sbjct: 4   TSIQTQSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLND-ILLPQ-FQQAFTLTNF 61

Query: 89  AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTRNLIGML 145
             GL+ S    G FI    +G +   +  +           +GA++   +A   N    L
Sbjct: 62  QAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFL 121

Query: 146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG 205
           +G F++  G+G   T A  +VT + P           Q     G + +++ G  +     
Sbjct: 122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181

Query: 206 WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELS 265
             +    +  +    L         S    Y              L+    + +    L 
Sbjct: 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYM------IIVAIVLLVALLIMLTKFPALQ 235

Query: 266 KLDRGDDGDIVKFEE---LLYGRHFRVVFIGSTLF-ALQQLSGINAIFYFSSSVFKSAGL 321
             +  D            L   RH+R   +    +   Q       I Y    +      
Sbjct: 236 SDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAG 295

Query: 322 SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEAFLVLVA 379
            +        +   +G      L+ +     +L       +    IS      + L+A
Sbjct: 296 FAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA 353

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 3e-07
 Identities = 62/404 (15%), Positives = 112/404 (27%), Gaps = 130/404 (32%)

Query: 25  DVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFN 84
           DV++    + +  E+++      +     +  TL   LF          L S        
Sbjct: 37  DVQDMPKSILSKEEIDHI-----IMSKDAVSGTL--RLFWT--------LLS-------K 74

Query: 85  GNTLAEGLVVSMCLGGAFIGSTLS---GWIADGV--------GRRRAFQLCALPMIIGAS 133
              + +           F+   L     ++   +           R +      +     
Sbjct: 75  QEEMVQ----------KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 134 ISA---TTR-----NLIGMLL----GRFVVGTGM-GLGPTVAALYV-----TEVSPPFVR 175
           + A    +R      L   LL     + V+  G+ G G T  AL V      +    F  
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-- 182

Query: 176 GTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI----VPAAI------LCLAM 225
                                 I            FW+++     P  +      L   +
Sbjct: 183 ---------------------KI------------FWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 226 V--FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGD--DGDIVK-FEE 280
              + + S H    K R    +AE  +LL     ++ L  L  L   +  +      F  
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LV-LL--NVQNAKAWNAFNL 264

Query: 281 ----LLYGRHFRVV-FIGSTLFALQQLSGINAIFYF--SSSVF-KSAGLS-SGLANVFVG 331
               LL  R  +V  F+ +       L   +         S+  K        L    + 
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 332 IANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEAFL 375
                 S++A  + D L       W  +  V C  ++ I+E+ L
Sbjct: 325 TNPRRLSIIAESIRDGLAT-----WDNWKHVNCDKLTTIIESSL 363

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 24/169 (14%)

Query: 91  GLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQLCALPMIIGASI--------SATTRN 140
                +       G+ L GW++D V  G R A  +  + ++  A+I        + T   
Sbjct: 291 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM 350

Query: 141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLG--LMGSLLIGI 198
           +  +++G  + G  M +G     L+  E++P    GT   F  +   LG  +  S ++G 
Sbjct: 351 ICMIVIGFLIYGPVMLIG-----LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405

Query: 199 PVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAE 247
            V    GW        +V      LA++        + +K R  +   E
Sbjct: 406 TVDFF-GW----DGGFMVMIGGSILAVILLI--VVMIGEKRRHEQLLQE 447

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 35/283 (12%), Positives = 80/283 (28%), Gaps = 33/283 (11%)

Query: 103 IGSTLSGWIADGVGRRRAFQ----LCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLG 158
               + G ++D    R        L A  M+    +   T ++  M +  F+ G   G+G
Sbjct: 77  FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG 136

Query: 159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA 218
                  +        RG   +    A  +G     L+ +        W    ++    A
Sbjct: 137 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCA 196

Query: 219 AILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKF 278
            ++ L               G     E + +     +          +         +  
Sbjct: 197 ILVALFAFAMMRDTPQ--SCGLPPIEEYKNDYPDDYNEKAEQELTAKQ---------IFM 245

Query: 279 EELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSS-----VFKSAGLS---SGLANVFV 330
           + +L  +    + I            +  + Y         + +    +   S  A    
Sbjct: 246 QYVLPNKLLWYIAIA--------NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 297

Query: 331 GIANLLGSVVAMVLMDKL--GRKALLQWSFFSMVICSSISLIL 371
             A + G+++   + DK+  G +      F ++V  ++I   +
Sbjct: 298 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM 340

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 42/304 (13%), Positives = 86/304 (28%), Gaps = 47/304 (15%)

Query: 91  GLVVSMCLGGAFIGSTLSGWIADGVGRRR--------AFQLCALPMIIGASISATTRNLI 142
           G++ +     + +   L G ++D +G R+           + A   I           L+
Sbjct: 46  GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV 105

Query: 143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE 202
           G ++G   +G     G      ++ +VS       +G           +G+ ++GI    
Sbjct: 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFE-FGRARMFGCVGWALGASIVGIMFTI 164

Query: 203 IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLA 262
              +    FW+    A IL + + F                A      L           
Sbjct: 165 NNQFV---FWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKL--------- 212

Query: 263 ELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS 322
                            EL        + +     +            F +S F +    
Sbjct: 213 ---------------ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQG 257

Query: 323 SGLANVFVGIANLLGSVVAMVLM-------DKLGRKALLQWSFFSMVICSSISLILEAFL 375
           + +     G    +G ++   +M       +++G K  L  +   M +    S    + L
Sbjct: 258 TRV----FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSAL 313

Query: 376 VLVA 379
            +V 
Sbjct: 314 EVVI 317

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	379
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.97
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.96
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.9
2xut_A	524	Proton/peptide symporter family protein; transport	99.88
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.66
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.56
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.56
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.49
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.46
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.21
2xut_A	524	Proton/peptide symporter family protein; transport	99.05

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=5.8e-34  Score=263.13  Aligned_cols=321  Identities=27%  Similarity=0.451  Sum_probs=245.7

Q ss_pred             cchhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCc------chhHHHHHHHHHHHHHHHHHHhHHhhhccchhHH
Q 016986           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNG------NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR  119 (379)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~  119 (379)
                      .+..+...+++.++.++.++|.+.++..+|.+.++++.+.      +....|++.+++.+|..++++++|+++||+|||+
T Consensus         7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~   86 (491)
T 4gc0_A            7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD   86 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            3444666667788889999999999999999988875432      2234589999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHh------------------cccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHH
Q 016986          120 AFQLCALPMIIGASISA------------------TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF  181 (379)
Q Consensus       120 ~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~  181 (379)
                      +++++.+++.+++++++                  +++|+++++++|+++|++.|...+....+++|+.|+++|++..++
T Consensus        87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~  166 (491)
T 4gc0_A           87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF  166 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence            99999999999999998                  478999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccccccc-------hhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCC
Q 016986          182 IQIATCLGLMGSLLIGIPVKEIA-------GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGG  254 (379)
Q Consensus       182 ~~~~~~~g~~~~~~~~~~l~~~~-------~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~  254 (379)
                      .+.+..+|.++++.++..+....       .+||+.+.+..+..++.++..++.||+|+|+..+++.+++.+.+++....
T Consensus       167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~  246 (491)
T 4gc0_A          167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN  246 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence            99999999999988876554322       23899998888888888888899999999999999999988887766543


Q ss_pred             CchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChh---HHHHHHH
Q 016986          255 SHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVG  331 (379)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  331 (379)
                      ....++..+..+....++ +.......++   .+..........+..+.....+..|.+...+..+....   ......+
T Consensus       247 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (491)
T 4gc0_A          247 TLATQAVQEIKHSLDHGR-KTGGRLLMFG---VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVG  322 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHTTHHHHSC---CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhh-hhhhHHHHhc---ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHH
Confidence            332222222111111100 0111112222   22333344444455556666777777777766655433   4566778


Q ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Q 016986          332 IANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLI  370 (379)
Q Consensus       332 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~  370 (379)
                      +..+++.++++++.||+|||+.+..+...+.++++.+..
T Consensus       323 ~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~  361 (491)
T 4gc0_A          323 VINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT  361 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHH
Confidence            888999999999999999999998888877777665543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=1.4e-34  Score=263.49  Aligned_cols=295  Identities=13%  Similarity=0.124  Sum_probs=241.7

Q ss_pred             hhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHH
Q 016986           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (379)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~  127 (379)
                      +++..+..+++..+..+++....++.+|.+.+++|.+..+.  +++.+++.+++.++++++|+++||+|||++++.+.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~  100 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL  100 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH--HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence            34556667777778888888888999999999999988877  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHH---hcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccc-cc
Q 016986          128 MIIGASIS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-EI  203 (379)
Q Consensus       128 ~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~  203 (379)
                      .+++.+++   +++++++.++++|+++|++.+...+...++++|++|+++|++++++.+.+..+|.++++.+++.+. +.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  180 (438)
T 3o7q_A          101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN  180 (438)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999   899999999999999999999999999999999999999999999999999999999999999988 55


Q ss_pred             chh------------------------hHHHHHHHHHHHHHHHHHHhh--cCCChhHHHHcCChHHHHHHHHHHhCCCch
Q 016986          204 AGW------------------------WRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHV  257 (379)
Q Consensus       204 ~~~------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~  257 (379)
                      .+.                        ||+.|++.++..++..+..++  .||+++    +++.                
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~----------------  240 (438)
T 3o7q_A          181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNHS----------------  240 (438)
T ss_dssp             SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT----TCCC----------------
T ss_pred             cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc----cccc----------------
Confidence            554                        899998766666555544443  344432    0000                


Q ss_pred             hHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHh-HHHHHHHcCCChhHHHHHHHHHHHH
Q 016986          258 KSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYF-SSSVFKSAGLSSGLANVFVGIANLL  336 (379)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  336 (379)
                                ++++.....++++++++|.++...+..++..........+.+.| ..+.++.+..+.+.......++.++
T Consensus       241 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  310 (438)
T 3o7q_A          241 ----------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFI  310 (438)
T ss_dssp             ----------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ----------cccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHH
Confidence                      01112223457788999999988888777777766666777777 6655555555567888888999999


Q ss_pred             HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016986          337 GSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEAF  374 (379)
Q Consensus       337 ~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~  374 (379)
                      +.++.|+++||++||+.+..+.++..++.+++.+.++.
T Consensus       311 ~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (438)
T 3o7q_A          311 GRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH  348 (438)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCc
Confidence            99999999999999999998888888877776655443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=3.6e-33  Score=255.02  Aligned_cols=307  Identities=13%  Similarity=0.062  Sum_probs=235.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhH
Q 016986           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (379)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~  126 (379)
                      +.+++.+..+++..+..+++.....+.+|.+.+++ .+..+.  +++.+++.++..++++++|+++||+|||++++++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~  100 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI  100 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH--HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence            34567777888888999999999999999999999 887777  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc----ccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccc
Q 016986          127 PMIIGASISAT----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (379)
Q Consensus       127 ~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  202 (379)
                      +.+++.+++++    ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  180 (451)
T 1pw4_A          101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  180 (451)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999    99999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             cchhhHHHHHHHHHHHHHHHH-HHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhh
Q 016986          203 IAGWWRICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEEL  281 (379)
Q Consensus       203 ~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (379)
                      ..+.||+.|++.++..++..+ ..+++||+|+....++..+...          +...  +...+.++.........++.
T Consensus       181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~--~~~~~~~~~~~~~~~~~~~~  248 (451)
T 1pw4_A          181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN----------DYPD--DYNEKAEQELTAKQIFMQYV  248 (451)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC----------C---------------CCTHHHHHHT
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc----------cccc--cchhhhhcccccccchHHHH
Confidence            554389999998877766544 4466888765321111100000          0000  00000000111111225678


Q ss_pred             hcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhh--CchHHHHHHHH
Q 016986          282 LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL--GRKALLQWSFF  359 (379)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~  359 (379)
                      ++++.++...+..++..........+.+.|+.+.++.+..+.+.......++.+++.++.|++.||+  ++|+.+..+..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~  328 (451)
T 1pw4_A          249 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFM  328 (451)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence            8888888887777777766666666666665543343344456888889999999999999999999  99988877766


Q ss_pred             HHH-HHHHHH
Q 016986          360 SMV-ICSSIS  368 (379)
Q Consensus       360 ~~~-i~~~~~  368 (379)
                      +.. ++.+++
T Consensus       329 ~~~~~~~~~~  338 (451)
T 1pw4_A          329 TLVTIATIVY  338 (451)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            655 444433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.97  E-value=1.1e-30  Score=232.93  Aligned_cols=261  Identities=14%  Similarity=0.136  Sum_probs=222.8

Q ss_pred             HHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHH
Q 016986           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (379)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~  133 (379)
                      ..+++..++..+......+.+|.+.+++|.+.++.  +++.+++.++..++++++|+++||+|||++++.+.++.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH--HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence            45566777778888888899999999999988777  9999999999999999999999999999999999999999999


Q ss_pred             HHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Q 016986          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (379)
Q Consensus       134 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~  213 (379)
                      +.+++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+..+ ||+.|++
T Consensus        81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~  159 (375)
T 2gfp_A           81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLF  159 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998877 9999998


Q ss_pred             HHHHHHHHHH-HHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHH
Q 016986          214 SIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (379)
Q Consensus       214 ~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (379)
                      .++..++..+ ..+++||+++.    ++                             ++++...++++.+++|.++...+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~----~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~  206 (375)
T 2gfp_A          160 LLVLCAGVTFSMARWMPETRPV----DA-----------------------------PRTRLLTSYKTLFGNSGFNCYLL  206 (375)
T ss_dssp             HHHHHHHHHCCCCCSSCCCSTT----TC-----------------------------CCCCTTTCSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcccCCC----Cc-----------------------------ccccHHHHHHHHhcCcchHHHHH
Confidence            8777766655 34557776431    00                             01122345677888888888877


Q ss_pred             HHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 016986          293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGR  350 (379)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~  350 (379)
                      ..++..........+.+.|..+.++.+..+.+.......++.+++.++.+++.||+++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~  264 (375)
T 2gfp_A          207 MLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST  264 (375)
T ss_dssp             HHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777888877777776677888888999999999999999999887

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.96  E-value=3.3e-27  Score=217.94  Aligned_cols=288  Identities=15%  Similarity=0.118  Sum_probs=194.5

Q ss_pred             ccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhcc-chhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhh
Q 016986           81 LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP  159 (379)
Q Consensus        81 ~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~  159 (379)
                      +|.+..+.  +++.+++.++..++++++|+++|| +|||++++.+.++.+++.+++++++|++.++++|+++|++.+...
T Consensus        49 ~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  126 (491)
T 4aps_A           49 LHITRATA--ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK  126 (491)
T ss_dssp             CCSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence            89887776  999999999999999999999999 899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCc--chhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhhc-CCChh---
Q 016986          160 TVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC-AESPH---  233 (379)
Q Consensus       160 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~---  233 (379)
                      +...++++|++|+++  |+.++++++.+.++|..++|.+++.+.+..+ ||+.|++.++..++..+..++. ++..+   
T Consensus       127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (491)
T 4aps_A          127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG-YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHY  205 (491)
T ss_dssp             HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred             chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence            999999999999988  7778888999999999999999999998888 9999999777666555544332 22110   


Q ss_pred             -HHHHcCChHHHHHHHHH----------------HhCCCchhHHHHH---------HHhhhcCCCCCcchhhhhhcccch
Q 016986          234 -WLYKKGRTAEAEAEFEK----------------LLGGSHVKSSLAE---------LSKLDRGDDGDIVKFEELLYGRHF  287 (379)
Q Consensus       234 -~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  287 (379)
                       ....+.+.++..+..+.                .....+.......         ........+.......+..+....
T Consensus       206 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (491)
T 4aps_A          206 LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSY  285 (491)
T ss_dssp             SCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTH
T ss_pred             cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence             00001112222222221                0001000000000         000000000000011111112223


Q ss_pred             hHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHH-----HHHHHHH
Q 016986          288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQ-----WSFFSMV  362 (379)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~~~  362 (379)
                      ....+..++...........++.|..+..+......+.......++.+++.++.+++.||++||+...     .+..+++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~  365 (491)
T 4aps_A          286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAG  365 (491)
T ss_dssp             HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence            34444445555555556666777776655555466778888888999999999999999999876544     6666666


Q ss_pred             HHHHHHHHH
Q 016986          363 ICSSISLIL  371 (379)
Q Consensus       363 i~~~~~~~~  371 (379)
                      ++.+++...
T Consensus       366 ~~~~~~~~~  374 (491)
T 4aps_A          366 LSFLLMAIP  374 (491)
T ss_dssp             HHHTTTHHH
T ss_pred             HHHHHHHHH
Confidence            665555443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.90  E-value=3.1e-25  Score=200.24  Aligned_cols=281  Identities=15%  Similarity=0.070  Sum_probs=174.4

Q ss_pred             HHHhhhhccccchhhh-hhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHH---HHHh
Q 016986           61 FLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA---SISA  136 (379)
Q Consensus        61 ~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~---~~~~  136 (379)
                      ++.........+.+|. +++++|.+..+.  |++.+++.++..++++++|+++||+|||++++.+..+.+++.   +..+
T Consensus        17 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~   94 (417)
T 2cfq_A           17 FFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI   94 (417)
T ss_dssp             HHHHHHHHHHTTTHHHHHHTTTCCCTTTS--HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444566666 456689988777  999999999999999999999999999999998887765532   2122


Q ss_pred             cccch-HHHHHHHHHHHhhhchhhHHHHHHHHhhcCC--CcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Q 016986          137 TTRNL-IGMLLGRFVVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (379)
Q Consensus       137 ~~~~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~  213 (379)
                      +++.. ..+...+++.|++.+...+.....+.++.++  ++|+...+.......+|..++|.+++.+.+. + ||+.|++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~-~~~~f~~  172 (417)
T 2cfq_A           95 FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-N-NQFVFWL  172 (417)
T ss_dssp             HHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-C-SHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-c-hhHHHHH
Confidence            32221 1233455665655554444333444444432  3567777777777788999999999888763 4 8999998


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHH
Q 016986          214 SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG  293 (379)
Q Consensus       214 ~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (379)
                      .++..++..+..++.+|+++.   +.+.++.                     +.++.++....++++++++|.++...+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (417)
T 2cfq_A          173 GSGCALILAVLLFFAKTDAPS---SATVANA---------------------VGANHSAFSLKLALELFRQPKLWFLSLY  228 (417)
T ss_dssp             TTTTTTTHHHHSCSSCCCCSC---SSCSSSS---------------------SSSCCCCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCccccc---ccccccc---------------------cccccccccHHHHHHHhcCCchhhHHHH
Confidence            766655554444444443310   0000000                     0000111122345677888887766554


Q ss_pred             HHHHHHHHhhchhHHHHhHHHHHH---HcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Q 016986          294 STLFALQQLSGINAIFYFSSSVFK---SAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISL  369 (379)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~  369 (379)
                      .+...........+.+.|+.+.++   ......+.......++.+++.++.++++||+|||+.+..+..+.+++.+++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~  307 (417)
T 2cfq_A          229 VIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS  307 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence            443333333333455666544332   1122235666677788889999999999999999988887777766554443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.88  E-value=5.7e-22  Score=184.36  Aligned_cols=151  Identities=16%  Similarity=0.160  Sum_probs=135.3

Q ss_pred             hhhhhhhcc------CCcchhHHHHHHHHHHHHHHHHHHhHHhhhccc-hhHHHHHHHhHHHHHHHHHHhccc-chHHHH
Q 016986           74 LESISLDLG------FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTR-NLIGML  145 (379)
Q Consensus        74 ~~~i~~~~~------~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~  145 (379)
                      .+.+.+++|      .+..+.  +++.+++.++..+++++.|+++||+ |||+++..+.++.+++.++.++++ +++.++
T Consensus        36 ~~~l~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (524)
T 2xut_A           36 TPFLMTALLLSIPEELRGAVA--KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFY  113 (524)
T ss_dssp             HHHHHHSCSSCCSSSTTTTTH--HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred             HHHHHHHhccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            344677888      877777  9999999999999999999999999 999999999999999999999999 999999


Q ss_pred             HHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHH---HHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Q 016986          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF---IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC  222 (379)
Q Consensus       146 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~  222 (379)
                      +.|++.|++.+...+...+++.|++|+++|+++.+.   .+.+.++|.+++|.+++.+.+..+ ||+.|++.++..++..
T Consensus       114 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~~~~  192 (524)
T 2xut_A          114 TGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-AAVAFGIPGVLMFVAT  192 (524)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999877666   889999999999999999988777 9999998877766655


Q ss_pred             HHHhh
Q 016986          223 LAMVF  227 (379)
Q Consensus       223 ~~~~~  227 (379)
                      +..++
T Consensus       193 ~~~~~  197 (524)
T 2xut_A          193 VFFWL  197 (524)
T ss_dssp             HHHHS
T ss_pred             HHHHH
Confidence            55443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.66  E-value=3.2e-15  Score=136.09  Aligned_cols=173  Identities=16%  Similarity=0.166  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHHhhhhccccchhhhhhhh-ccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccc--hhHHHHHHHhHHHH
Q 016986           53 VLVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQLCALPMI  129 (379)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~--Grr~~l~~~~~~~~  129 (379)
                      +....+..++............|.+.++ +|.+..+.  +++.+.+.++..++.++.|++.||+  |||+.+..+..+..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            3344444444444444455667776666 78876666  8999999999999999999999999  99999988877766


Q ss_pred             -HHHHHHhcc--cchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHH-HHHHHHhhcccccccch
Q 016986          130 -IGASISATT--RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEIAG  205 (379)
Q Consensus       130 -~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~  205 (379)
                       ++.++..+.  .+.+.+.+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+..+
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  411 (451)
T 1pw4_A          332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  411 (451)
T ss_dssp             HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             677777766  36777888889999999999988899999999999999999999999999 99999999999999888


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhc
Q 016986          206 WWRICFWVSIVPAAILCLAMVFC  228 (379)
Q Consensus       206 ~wr~~f~~~~~~~~~~~~~~~~~  228 (379)
                       |+..|++.++..++..+..+++
T Consensus       412 -~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          412 -WDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHH
Confidence             8999998877777666555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.56  E-value=1.4e-14  Score=133.31  Aligned_cols=165  Identities=18%  Similarity=0.082  Sum_probs=114.4

Q ss_pred             hhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcc-----c
Q 016986           65 YHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-----R  139 (379)
Q Consensus        65 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-----~  139 (379)
                      .....+....+.+.++.+.+....  ........+...++.++.+++.||+|||+.++.+.....++.+..+..     +
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~  368 (491)
T 4gc0_A          291 VGINVVLYYAPEVFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP  368 (491)
T ss_dssp             TCHHHHHHHHHHHHHHSSCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             hhhhHHHhcchHHHHhcCCCccch--hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc
Confidence            333444556677778777765544  456667778888999999999999999999999988888777665432     1


Q ss_pred             chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch-----hhHHHHHHH
Q 016986          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-----WWRICFWVS  214 (379)
Q Consensus       140 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-----~wr~~f~~~  214 (379)
                      +...++..-+..+.......++...+.+|.+|.+.|++++++......+|..+++.+.+.+.+...     ++.+.|++.
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~  448 (491)
T 4gc0_A          369 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIY  448 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            222222222222222333456778899999999999999999999999999888887766544321     144566666


Q ss_pred             HHHHHHHHH-HHhhcCCC
Q 016986          215 IVPAAILCL-AMVFCAES  231 (379)
Q Consensus       215 ~~~~~~~~~-~~~~~~e~  231 (379)
                      +..+++..+ .++++||+
T Consensus       449 ~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          449 GCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             HHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHheecCC
Confidence            666655554 45779999

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.56  E-value=1.1e-14  Score=131.06  Aligned_cols=140  Identities=14%  Similarity=0.006  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhc
Q 016986           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS  170 (379)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  170 (379)
                      ++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++.|.+
T Consensus       262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  341 (417)
T 2cfq_A          262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            67778888888899999999999999999999999888888888888888888888888888887777777789999999


Q ss_pred             CCCcchhHHHH-HHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHh-hcCCC
Q 016986          171 PPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV-FCAES  231 (379)
Q Consensus       171 ~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~  231 (379)
                      |++.|+.+.++ ++....+|..++|.+++.+.+..+ ++..|.+.++..++..+..+ +.+|+
T Consensus       342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~  403 (417)
T 2cfq_A          342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred             CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            99999999998 488888999999999999988777 78888887777766655543 35554

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.49  E-value=1.1e-13  Score=125.41  Aligned_cols=151  Identities=14%  Similarity=0.031  Sum_probs=121.1

Q ss_pred             ccccchhhhh-hhh-ccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHH
Q 016986           68 GVVNEPLESI-SLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGML  145 (379)
Q Consensus        68 ~~~~~~~~~i-~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~  145 (379)
                      .......|.+ .++ +|.+..+.  ++..+.+.++..++.++.|+++||+|||+++..+.++..++.++..+.++.+.++
T Consensus       275 ~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (438)
T 3o7q_A          275 TACWSYLIRYAVEEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLI  352 (438)
T ss_dssp             HHHHHHHHHHHHHHSTTCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHHHHHHHHhhhccCCcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            3334455555 444 58876666  8999999999999999999999999999999999999999999888888876655


Q ss_pred             HHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Q 016986          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (379)
Q Consensus       146 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~  223 (379)
                      .. ++.|++.+...+...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..+.++..|++.++..++..+
T Consensus       353 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          353 AL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            44 8889999999999999999999866 888888877 556899999999999988766467777765544444333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.46  E-value=4e-13  Score=123.62  Aligned_cols=157  Identities=10%  Similarity=-0.003  Sum_probs=118.3

Q ss_pred             hccccchhhhhhh-hccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHH-----HHhHHHHHHHHHHhccc-
Q 016986           67 LGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ-----LCALPMIIGASISATTR-  139 (379)
Q Consensus        67 ~~~~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~-----~~~~~~~~~~~~~~~~~-  139 (379)
                      .......+|.+.+ .++.+..+.  ++..+...++..++.++.|++.||+|||+...     .+.++.+++.++.++.. 
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (491)
T 4aps_A          299 EEQGSVVLATFAAERVDSSWFPV--SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGA  376 (491)
T ss_dssp             HGGGGTHHHHHHHHSCCCSSSCS--GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHH
T ss_pred             HhhccHHHHHHHHHHhccCccCH--HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333445554444 355553344  67788888888999999999999999986655     67777777766665543 


Q ss_pred             --------chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Q 016986          140 --------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (379)
Q Consensus       140 --------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f  211 (379)
                              +.+.+++.-++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..  +.+.|
T Consensus       377 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~--~~~~~  454 (491)
T 4aps_A          377 LYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS--EVAYF  454 (491)
T ss_dssp             HCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS--TTHHH
T ss_pred             hcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHH
Confidence                    77778888899999999989999999999999999999999999999999999999999887654  45666


Q ss_pred             HHHHHHHHHHHHHHhh
Q 016986          212 WVSIVPAAILCLAMVF  227 (379)
Q Consensus       212 ~~~~~~~~~~~~~~~~  227 (379)
                      .+.+...++..+..++
T Consensus       455 ~~~~~~~~~~~~~~~~  470 (491)
T 4aps_A          455 SYFGLGSVVLGIVLVF  470 (491)
T ss_dssp             HHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666655555544443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.21  E-value=6.1e-12  Score=111.48  Aligned_cols=154  Identities=15%  Similarity=0.100  Sum_probs=112.0

Q ss_pred             HHHHHHHHHhhhhccccchhhhhhhh-ccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHH-HHHHH
Q 016986           55 VATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP-MIIGA  132 (379)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~-~~~~~  132 (379)
                      ...+..++............|.+.++ +|.+..+.  +++.+...++..++.++.+++.||+|+|.  ..+... ...+.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~  278 (375)
T 2gfp_A          203 CYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTV--SILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGL  278 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHH--HHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            33333344444444444556655444 78765555  89999999999999999999999999833  233322 22221


Q ss_pred             H--HHhc--ccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhH
Q 016986          133 S--ISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (379)
Q Consensus       133 ~--~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr  208 (379)
                      .  ....  .++.+.+++..++.|++.+...+....++.|..| ++|+++.++.+....+|..++|.+.+.+.+..+ |+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-~~  356 (375)
T 2gfp_A          279 LMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ-GS  356 (375)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-HH
T ss_pred             HHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cc
Confidence            1  1222  2467777788899999999999999999999998 899999999999999999999999998877655 77


Q ss_pred             HHHHHH
Q 016986          209 ICFWVS  214 (379)
Q Consensus       209 ~~f~~~  214 (379)
                      ..+.+.
T Consensus       357 ~~~~~~  362 (375)
T 2gfp_A          357 LGLLMT  362 (375)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.05  E-value=9.1e-10  Score=102.06  Aligned_cols=137  Identities=12%  Similarity=0.096  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhh----ccchh----HHHHHHHhHHHHHHHHHHhcc---------cchHHHHHHHHHHHh
Q 016986           91 GLVVSMCLGGAFIGSTLSGWIA----DGVGR----RRAFQLCALPMIIGASISATT---------RNLIGMLLGRFVVGT  153 (379)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~----d~~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~  153 (379)
                      +++.+...++..++.++.+++.    ||.|+    ++.+..+.++.+++.++.++.         .+.+.+++..++.|+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  417 (524)
T 2xut_A          338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF  417 (524)
T ss_dssp             HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence            5666666677777777777764    55543    356777888888887777664         367778888999999


Q ss_pred             hhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch-hh---------HHHHHHHHHHHHHHHH
Q 016986          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WW---------RICFWVSIVPAAILCL  223 (379)
Q Consensus       154 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~w---------r~~f~~~~~~~~~~~~  223 (379)
                      +.+...+....++.|..|+++|++++|+.+....+|..++|.+.+.+.+..+ +|         +..|++.+...++..+
T Consensus       418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (524)
T 2xut_A          418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAI  497 (524)
T ss_dssp             HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998876431 13         3336665555555544


Q ss_pred             HHhh
Q 016986          224 AMVF  227 (379)
Q Consensus       224 ~~~~  227 (379)
                      ..++
T Consensus       498 ~~~~  501 (524)
T 2xut_A          498 VFAL  501 (524)
T ss_dssp             HHC-
T ss_pred             HHHH
Confidence            4433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	379
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-09
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	5e-06

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 57.4 bits (137), Expect = 1e-09
 Identities = 43/336 (12%), Positives = 100/336 (29%), Gaps = 17/336 (5%)

Query: 40  ENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLG 99
              +P+++     + +     +   Y +           ++ GF+   L  G  +S    
Sbjct: 13  AEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDL--GFALSGISI 70

Query: 100 GAFIGSTLSGWIADGVGRRRAFQ----LCALPMIIGASISATTRNLIGMLLGRFVVGTGM 155
                  + G ++D    R        L A  M+    +   T ++  M +  F+ G   
Sbjct: 71  AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQ 130

Query: 156 GLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI 215
           G+G       +        RG   +    A  +G     L+ +        W    ++  
Sbjct: 131 GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPA 190

Query: 216 VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI 275
             A ++ L                   E + ++         +   A+            
Sbjct: 191 FCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQ----------- 239

Query: 276 VKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANL 335
           +  + +L  +    + I +    L +   ++    +   V   A   S  A      A +
Sbjct: 240 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGI 299

Query: 336 LGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLIL 371
            G+++   + DK+ R        F M + +  +++ 
Sbjct: 300 PGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 335

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 45.9 bits (107), Expect = 5e-06
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 5/201 (2%)

Query: 51  PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGW 110
            +  +  L  F + + +G    P   I L    + +    G++ +     + +   L G 
Sbjct: 7   TNFWMFGLFFFFYFFIMGAYF-PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGL 65

Query: 111 IADGVGRRRAFQLCALPMIIGASISA----TTRNLIGMLLGRFVVGTGMGLGPTVAALYV 166
           ++D +G R+        M++  +              +L+G  V G  +G      A  V
Sbjct: 66  LSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAV 125

Query: 167 TEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV 226
                   R +   F +      +  +L   I         +  FW+    A IL + + 
Sbjct: 126 EAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF 185

Query: 227 FCAESPHWLYKKGRTAEAEAE 247
           F                A   
Sbjct: 186 FAKTDAPSSATVANAVGANHS 206

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	379
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.87
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.66
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.51

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.2e-32  Score=248.84  Aligned_cols=292  Identities=13%  Similarity=0.037  Sum_probs=219.4

Q ss_pred             chhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhH
Q 016986           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (379)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~  126 (379)
                      +.+|..+..++++.+..+++...++...|.+. |+|++.++.  |++.+++.+++.++++++|+++||+|||+++..+.+
T Consensus        21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   97 (447)
T d1pw4a_          21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI   97 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            34577777788888888888888888888776 579988888  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc----cchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccc
Q 016986          127 PMIIGASISATT----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE  202 (379)
Q Consensus       127 ~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  202 (379)
                      +.+++.++++++    ++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..+++.+++.+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  177 (447)
T d1pw4a_          98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  177 (447)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence            999999988876    4788999999999999999999999999999999999999999999999999999998887776


Q ss_pred             cchhhHHHHHHHHHHHHHHHHH-HhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhh
Q 016986          203 IAGWWRICFWVSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEEL  281 (379)
Q Consensus       203 ~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (379)
                      ..++||+.|++.++..++..+. +.+.+|+|+........+...+            ...+..++.++.........+..
T Consensus       178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~  245 (447)
T d1pw4a_         178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND------------YPDDYNEKAEQELTAKQIFMQYV  245 (447)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------------------CCTHHHHHHT
T ss_pred             hhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhh------------cccchhhccccccchhhHHHHHH
Confidence            5545999999877776665554 4456665542211111110000            00000011112223334456677


Q ss_pred             hcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHH
Q 016986          282 LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKAL  353 (379)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~  353 (379)
                      ++++.++......++.....+....+.+.|+.+.++.+..+.+.......++.+++.++.|++.||++|++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  317 (447)
T d1pw4a_         246 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR  317 (447)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH
T ss_pred             HcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccc
Confidence            888888877777766666666656666666554444344445678888899999999999999999987653

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=6.7e-22  Score=175.33  Aligned_cols=295  Identities=13%  Similarity=0.008  Sum_probs=186.6

Q ss_pred             HHHHHHHHHHHhhhhccccchhhh-hhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHH
Q 016986           53 VLVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (379)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~  131 (379)
                      ...+.+..++..+..+...+.+|. +.+++|++..+.  |++.+++.++..++++++|+++||+|||++++.+..+..++
T Consensus         9 ~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~--g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~   86 (417)
T d1pv7a_           9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM   86 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            334455555666666666777776 567799988777  99999999999999999999999999999999999999998


Q ss_pred             HHHHhcccchHHHH----HHHHHHHhhhchhhHHHHHHHHhhcCC--CcchhHHHHHHHHHHHHHHHHHhhcccccccch
Q 016986          132 ASISATTRNLIGML----LGRFVVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (379)
Q Consensus       132 ~~~~~~~~~~~~l~----~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  205 (379)
                      .++..+..+.....    +.+.+.+.+.+...........+..++  +++.+..+........+..+++.+++.+.+..+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  166 (417)
T d1pv7a_          87 FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINN  166 (417)
T ss_dssp             HHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccc
Confidence            88888877665543    445555555544444444444433332  345566777788888889999999988877663


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhccc
Q 016986          206 WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR  285 (379)
Q Consensus       206 ~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (379)
                       |+..+.......+...+..+..+|+++    +.+.++..                     .+..+........+..+++
T Consensus       167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~  220 (417)
T d1pv7a_         167 -QFVFWLGSGCALILAVLLFFAKTDAPS----SATVANAV---------------------GANHSAFSLKLALELFRQP  220 (417)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHSSCCCSCS----SSCSSHHH---------------------HSCCCCCCHHHHHHHTTSS
T ss_pred             -cccccchhhHHHHHHHHHHHHhccccc----chhhhhhh---------------------hhhcccccccccccccccc
Confidence             444444444445555555566666643    11111100                     0112222233344445555


Q ss_pred             chhHHHHHHHHHHHHHhhchhHHHHhHHHHH---HHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Q 016986          286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVF---KSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMV  362 (379)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~  362 (379)
                      ..+......................+.....   +......+.......++..++..+.+++.||.++|+.+.++..+..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~  300 (417)
T d1pv7a_         221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMS  300 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             cccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHH
Confidence            5544444333333322222222222211111   1111123456677778888999999999999999999999998888


Q ss_pred             HHHHHHHHHHHhh
Q 016986          363 ICSSISLILEAFL  375 (379)
Q Consensus       363 i~~~~~~~~~~~~  375 (379)
                      ++.+++.+.++.+
T Consensus       301 ~~~~~~~~~~~~~  313 (417)
T d1pv7a_         301 VRIIGSSFATSAL  313 (417)
T ss_dssp             HHHHHHHTCCCHH
T ss_pred             Hhhhccccccccc
Confidence            8887776655544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=5.2e-16  Score=136.78  Aligned_cols=139  Identities=14%  Similarity=0.022  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhc
Q 016986           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS  170 (379)
Q Consensus        91 ~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  170 (379)
                      +...+...++..++..+.+++.||+|+|+.+..+.++.+++.++..+.++.+.+++..++.|++.+...+...+++.|.+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  341 (417)
T d1pv7a_         262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            67778888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcchhHHHHH-HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhh-cCC
Q 016986          171 PPFVRGTYGAFI-QIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF-CAE  230 (379)
Q Consensus       171 ~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e  230 (379)
                      |+++|+++.++. +....+|..++|.+.+.+.+..| |+..|++.++..++..++..+ +++
T Consensus       342 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            999999999975 56778999999999999999888 899998877776666555444 443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=5.7e-14  Score=125.28  Aligned_cols=149  Identities=17%  Similarity=0.151  Sum_probs=113.1

Q ss_pred             hhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHH---HHHHHHHHh--cccchHHHHHHHH
Q 016986           75 ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP---MIIGASISA--TTRNLIGMLLGRF  149 (379)
Q Consensus        75 ~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~---~~~~~~~~~--~~~~~~~l~~~r~  149 (379)
                      ..+.+..+.+..+.  ++..+.+.++..++.++.|+++||++||+........   ..++.+...  ...+.+..+++-+
T Consensus       274 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (447)
T d1pw4a_         274 TYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI  351 (447)
T ss_dssp             HHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHH
T ss_pred             hhcccccccccchh--hhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            34455677766666  8899999999999999999999999986543333322   222222222  2456777778888


Q ss_pred             HHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHH-HHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHh
Q 016986          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV  226 (379)
Q Consensus       150 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~  226 (379)
                      +.|++.+...+....+..|.+|+++|+++.|+.+....+ |.+++|.+.+.+.+..| |+..|++.+...++..++..
T Consensus       352 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         352 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHH
Confidence            899998888889999999999999999999998877666 57788999999999888 89988876666655554443