Citrus Sinensis ID: 016998

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MTMEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTVSLQFLYLPLINYCICYIHN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEHHHHHccccccccccccccccccHHHHHHHHccccccccEEEEEccccccccHHHHHHHHHHHHcccEEEEEEcccHHHHHccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHcccccEEEEcccccccccccHHHHHHHHccEEEEEcccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEccccccccccccEEEEEccccccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHcccccccccHHHHHHHHHccccccEEEccccccccHHHHHHccccEEEEccccccccccccccEEEEEEEEcEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccEEccccEccHEEcccEEEcccccccccccccccccccccEEEEccccccccccccEEEEEEEccccccHHHHHHHHHHHccccEEEEEEEcHHHHHHccccccccHHHHHHHHccEccccEEEccccccccHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHccccccccccHccccccccccccccccEEEcccccEEEEcccccccccccEEEEEcEccccccHHHHHHHHHHHccccEEEEEEEcHHHHHHHcccccccccHHHHHHHHHHHcHHHHHcccccccccHHHHHHccccEEEEccccccccccccccccEEEEccccEEEEEcc
Coil and Loop (DISEMBL)
mtmeyesnswiwdglyyyphfFGGLMLTAALLGVStsyfggigvfslphlwsdcfhkkkcgkkkrVRVYMDGCFDLMHYGHANALRQAKALGDElvvgvvsdeeiiankgppvlsMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNehkidyiihgddpcllpdgtDAYALAKKvgrykqikrtegvsstDIVGRILSSmedtkacedhnnaslprdplraiqskdahlsqflptsrrivqfsnckgpgpnarVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYtdqivsehrgsyhpimhlHERSLSVLACRYvdeviigapweVTKDMITTFNICLVVHgtvsetntpltVSLQFLYLPLINYCICYIHN
Flexible Loop (DISEMBL)
mtmeyesnSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCfhkkkcgkkkrVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEeiiankgppvlsmEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKvgrykqikrtegvsstdivGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTVSLQFLYLPLINYCICYIHN
Low Complexity Region (SEG)
MTMEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHkkkcgkkkRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTVSLQFLYLPLINYCICYIHN
Disordered region (IsUnstruct)
*******NSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRIL**********************************FLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTVSLQFLYLPLINYCICYI**
Disordered Region (DISOPRED)
****Y*SNSWIWDGLYYYPHFFGGLMLTAALL***********VFS********************RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTVSLQFLYLPLINYCICYIH*
Disordered Region (DISEMBL)
MTMEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTVSLQFLYLPLINYCICYIHN
Disordered Region (DISPRO)
*****ESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTK**********************AHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTVSLQFLYLPLINYCICYIHN
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTMEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTVSLQFLYLPLINYCICYIHN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	379	2.2.26 [Sep-21-2011]
Q55BZ4	360	Ethanolamine-phosphate cy	yes	no	0.736	0.775	0.537	2e-86
Q99447	389	Ethanolamine-phosphate cy	yes	no	0.733	0.714	0.460	4e-74
Q922E4	404	Ethanolamine-phosphate cy	yes	no	0.759	0.712	0.449	1e-73
O88637	404	Ethanolamine-phosphate cy	yes	no	0.746	0.700	0.450	4e-73
Q5EA75	389	Ethanolamine-phosphate cy	yes	no	0.749	0.730	0.454	5e-73
Q8SQW6	322	Probable ethanolamine-pho	yes	no	0.680	0.801	0.396	2e-51
Q9UTI6	365	Probable ethanolamine-pho	yes	no	0.646	0.671	0.353	1e-45
P33412	323	Ethanolamine-phosphate cy	yes	no	0.659	0.773	0.354	2e-35
O74975	362	Probable choline-phosphat	no	no	0.348	0.364	0.449	2e-24
P49587	370	Choline-phosphate cytidyl	N/A	no	0.366	0.375	0.374	6e-24

>sp|Q55BZ4|PCY2_DICDI Ethanolamine-phosphate cytidylyltransferase OS=Dictyostelium discoideum GN=pctA PE=1 SV=1

 Score =  319 bits (818), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 158/294 (53%), Positives = 207/294 (70%), Gaps = 15/294 (5%)

Query: 63  KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLAL 122
           KK +RVY+DGCFDLMH+GHANALRQA+ LGD LVVGV +DEEI  NKGPPV++ +ER   
Sbjct: 7   KKPIRVYVDGCFDLMHFGHANALRQARELGDILVVGVHTDEEIAKNKGPPVMNEQERYKA 66

Query: 123 VSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRY 182
           V   KW DEV   APY +TE++++ L      D+ +HG+D  +  DG D Y   KK G++
Sbjct: 67  VRACKWADEVAEGAPYTLTEEYLDSL----NCDFCVHGEDISVGADGKDVYEGIKKSGKF 122

Query: 183 KQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAI-------QSKDAHLSQ 235
           + IKRTEGVS+T++VGR+L   +D       N +     PL  +       QS    LS 
Sbjct: 123 RFIKRTEGVSTTELVGRMLLCTKDHL----QNVSGEQTSPLGGVNPNVLHKQSPYTSLSH 178

Query: 236 FLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQI 295
           FLPT+R+IVQFS  + P PN +++Y+DG FDLFH GH E LK+AR LGD+L+VG++ D++
Sbjct: 179 FLPTTRKIVQFSEGRSPKPNDKIIYMDGGFDLFHVGHTEALKQARALGDYLIVGVHDDRV 238

Query: 296 VSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
           V E +GS  PIM+LHER LSVL+CRYVDEV+IGAP+ VTKDMI + +I +VVHG
Sbjct: 239 VHEQKGSNFPIMNLHERVLSVLSCRYVDEVVIGAPFSVTKDMIDSLHINVVVHG 292

Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine. Catalyzes the formation of CDP-ethanolamine.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 4

>sp|Q99447|PCY2_HUMAN Ethanolamine-phosphate cytidylyltransferase OS=Homo sapiens GN=PCYT2 PE=1 SV=1

 Score =  278 bits (712), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 139/302 (46%), Positives = 206/302 (68%), Gaps = 24/302 (7%)

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
           G ++ VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER 
Sbjct: 18  GGRRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERY 77

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
            +V  +KWVDEV+  APY  T + +++    +  D+ +HG+D  L  DG D Y   K+ G
Sbjct: 78  KMVQAIKWVDEVVPAAPYVTTLETLDK----YNCDFCVHGNDITLTVDGRDTYEEVKQAG 133

Query: 181 RYKQIKRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNA--SLP--RDPLRAIQSK 229
           RY++ KRT+GVS+TD+VGR+L       SS E +    ++ ++    P  R+P   +   
Sbjct: 134 RYRECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYADSFGKCPGGRNPWTGV--- 190

Query: 230 DAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLL 287
               SQFL TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K  +L +  +++
Sbjct: 191 ----SQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYII 246

Query: 288 VGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVV 347
            G++ DQ V+ ++G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT ++++ F + LV 
Sbjct: 247 AGLHFDQEVNHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVC 306

Query: 348 HG 349
           HG
Sbjct: 307 HG 308

Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine. Catalyzes the formation of CDP-ethanolamine.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|Q922E4|PCY2_MOUSE Ethanolamine-phosphate cytidylyltransferase OS=Mus musculus GN=Pcyt2 PE=1 SV=1

 Score =  276 bits (707), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 142/316 (44%), Positives = 206/316 (65%), Gaps = 28/316 (8%)

Query: 58  KKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSME 117
           K  G ++ VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + E
Sbjct: 15  KGPGDQRIVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQE 74

Query: 118 ERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK 177
           ER  +V  +KWVDEV+  APY  T + +++    H  D+ +HG+D  L  DG D Y   K
Sbjct: 75  ERYKMVQAIKWVDEVVPAAPYVTTLETLDK----HNCDFCVHGNDITLTVDGRDTYEEVK 130

Query: 178 KVGRYKQIKRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNA-SLPRDPLRA---- 225
           + GRY++ KRT+GVS+TD+VGR+L       SS E +    ++ ++   P  P  A    
Sbjct: 131 QAGRYRECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYADSFGKPPHPTPAGDTL 190

Query: 226 ----------IQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEI 275
                      QS    +SQFL TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ 
Sbjct: 191 SSEVSSQCPGGQSPWTGVSQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDF 250

Query: 276 LKKARQLGD--FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEV 333
           L++  +L    +++ G++ DQ V+ ++G  +PIM+LHER+LSVLACRYV EV+IGAP+ V
Sbjct: 251 LQEVHKLAKRPYVIAGLHFDQEVNRYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYSV 310

Query: 334 TKDMITTFNICLVVHG 349
           T +++  F + LV HG
Sbjct: 311 TAELLNHFKVDLVCHG 326

Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine. Catalyzes the formation of CDP-ethanolamine.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|O88637|PCY2_RAT Ethanolamine-phosphate cytidylyltransferase OS=Rattus norvegicus GN=Pcyt2 PE=1 SV=1

 Score =  275 bits (703), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 140/311 (45%), Positives = 204/311 (65%), Gaps = 28/311 (9%)

Query: 63  KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLAL 122
           ++ VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER  +
Sbjct: 20  QRTVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKM 79

Query: 123 VSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRY 182
           V  +KWVDEV+  APY  T + +++    H  D+ +HG+D  L  DG D Y   K+ GRY
Sbjct: 80  VQAIKWVDEVVPAAPYVTTLETLDK----HNCDFCVHGNDITLTVDGRDTYEEVKQAGRY 135

Query: 183 KQIKRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNA-SLPRDPLRA--------- 225
           ++ KRT+GVS+TD+VGR+L       SS E +    ++ ++   P  P  A         
Sbjct: 136 RECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYADSFGKPPHPTPAGDTLSSEVS 195

Query: 226 -----IQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKAR 280
                 QS    +SQFL TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L++  
Sbjct: 196 SQCPGGQSPWTGVSQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLQEVH 255

Query: 281 QLGD--FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMI 338
           +L    +++ G++ DQ V+ ++G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT +++
Sbjct: 256 KLAKRPYVIAGLHFDQEVNRYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYSVTAELL 315

Query: 339 TTFNICLVVHG 349
             F + LV HG
Sbjct: 316 NHFKVDLVCHG 326

Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine. Catalyzes the formation of CDP-ethanolamine.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|Q5EA75|PCY2_BOVIN Ethanolamine-phosphate cytidylyltransferase OS=Bos taurus GN=PCYT2 PE=2 SV=1

 Score =  275 bits (702), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 141/310 (45%), Positives = 206/310 (66%), Gaps = 26/310 (8%)

Query: 58  KKCGKKKR--VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLS 115
           K+ G + R  VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV +
Sbjct: 13  KRPGPRARRAVRVWCDGCYDMVHYGHSNQLRQARAMGDHLIVGVHTDEEIAKHKGPPVFT 72

Query: 116 MEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYAL 175
            EER  +V  +KWVDEV+  APY  T + +++    +  D+ +HG+D  L  DG D Y  
Sbjct: 73  QEERYKMVQAIKWVDEVVPAAPYVTTLETLDK----YNCDFCVHGNDITLTVDGRDTYEE 128

Query: 176 AKKVGRYKQIKRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNA--SLP--RDPLR 224
            K+ GRY++ KRT+GVS+TD+VGR+L       SS E +    ++ ++    P  R+P  
Sbjct: 129 VKQAGRYRECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYADSFGKCPGGRNPWT 188

Query: 225 AIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD 284
            +       SQFL TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K   L +
Sbjct: 189 GV-------SQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVYGLAE 241

Query: 285 --FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFN 342
             +++ G++ DQ V+ ++G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT +++  F 
Sbjct: 242 RPYVIAGLHFDQEVNHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYSVTAELLDHFK 301

Query: 343 ICLVVHGTVS 352
           + LV HG   
Sbjct: 302 VDLVCHGKTE 311

Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine. Catalyzes the formation of CDP-ethanolamine.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|Q8SQW6|ECT1_ENCCU Probable ethanolamine-phosphate cytidylyltransferase OS=Encephalitozoon cuniculi (strain GB-M1) GN=MUQ1 PE=1 SV=1

 Score =  203 bits (517), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 111/280 (39%), Positives = 172/280 (61%), Gaps = 22/280 (7%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           +V+ DGCFD+ HYGHANALRQ+KALGD L+ GV S   I   KG PV+  EER  +V G 
Sbjct: 8   KVWADGCFDMFHYGHANALRQSKALGDYLIAGVHSSLSINQEKGLPVMEDEERYEVVEGC 67

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK 186
           ++VDEV+ +AP+ +T+  M     E+ +  + HG+D  L   G D+Y   +++G +++++
Sbjct: 68  RYVDEVVRDAPF-VTQTSM---IKEYGVSIVAHGNDIVLDSSGQDSYCQVRRMGIFREVE 123

Query: 187 RTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQF 246
           RT G+S+T+IVGR++  +++  +  D  N    +D        D  LS F+ +       
Sbjct: 124 RTFGISTTEIVGRMM--LKNRGSWLDGENGESSKDS----GYHDRLLSLFMSS------- 170

Query: 247 SNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPI 306
               G     +VV++DG FDLFHAGHV  L+ AR +GD+L+VGI+ D+   E+  SY P+
Sbjct: 171 ---MGREKRGKVVFMDGNFDLFHAGHVASLRIARGMGDYLIVGIHDDETTKEYTRSY-PV 226

Query: 307 MHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLV 346
           +   ER L+++ACRYVDE+++ +P+ V  + I    I +V
Sbjct: 227 LSTKERMLTLMACRYVDEIVV-SPYLVGSEFIKRHGIDVV 265

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|Q9UTI6|ECT1_SCHPO Probable ethanolamine-phosphate cytidylyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC15E1.05c PE=2 SV=1

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 100/283 (35%), Positives = 158/283 (55%), Gaps = 38/283 (13%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           R+++DGC D  HYGH+NA+ QAK LG+ LV+G+ SDEEI  NKGPPV+++EER    +  
Sbjct: 10  RLWLDGCMDFFHYGHSNAILQAKQLGETLVIGIHSDEEITLNKGPPVMTLEERCLSANTC 69

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK 186
           KWVDEV+ +APY    ++M R    +   Y++HGDD     +G D Y  AK   +Y ++K
Sbjct: 70  KWVDEVVPSAPYVFDLEWMRR----YGCQYVVHGDDISTDANGDDCYRFAKAADQYLEVK 125

Query: 187 RTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQF 246
           RTEGVS+T+++ R+LSS+             +   P+  + S+   L +F   S  +  F
Sbjct: 126 RTEGVSTTELLDRLLSSVP----------LEIYSTPVSVLSSQIDLLRRFATDSDGLTPF 175

Query: 247 S-----NCKGP------------GPNARVVYIDGAFDLFHAGHVEILKKARQL--GDFLL 287
           +     N + P             P   ++YIDG +DLF   H+  L+   ++  G  ++
Sbjct: 176 TDVFIYNTEKPETLISGTTLLRLNPEKNIIYIDGDWDLFTEKHISALELCTRMFPGIPIM 235

Query: 288 VGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAP 330
            GI+ D+   E      P+++L ER L++L C+Y+  +++G P
Sbjct: 236 AGIFADEKCFE-----KPMLNLLERILNLLQCKYISSILVGPP 273

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|P33412|ECT1_YEAST Ethanolamine-phosphate cytidylyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ECT1 PE=1 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/271 (35%), Positives = 140/271 (51%), Gaps = 21/271 (7%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKAL----GDELVVGVVSDEEIIANKGPPVLSMEERLAL 122
           +V++DGCFD  H+GHA A+ QA+        +L  GV +DE+I  NKG PV++  ER   
Sbjct: 9   KVWIDGCFDFTHHGHAGAILQARRTVSKENGKLFCGVHTDEDIQHNKGTPVMNSSERYEH 68

Query: 123 VSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRY 182
               +W  EV+  APY     +M++    ++  Y++HGDD  +  +G D Y L K++GR+
Sbjct: 69  TRSNRWCSEVVEAAPYVTDPNWMDK----YQCQYVVHGDDITIDANGEDCYKLVKEMGRF 124

Query: 183 KQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSK-DAHLSQFLPTSR 241
           K +KRT GVS+T+I+ RIL+         D+   +         Q     H   F     
Sbjct: 125 KVVKRTYGVSTTEIIHRILTKKSLPPTHPDYYPTTQELSFYSVAQDAVSKHCYVFQRDLD 184

Query: 242 RIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKAR---QLGDFLLVGIYTDQIVSE 298
            ++     K    +   VY+DG FDLFH G ++ L+K +        L+VGI T    S 
Sbjct: 185 NVLVNGGYKFDAEDC--VYVDGDFDLFHMGDIDQLRKLKMDLHPDKKLIVGITTSDYSS- 241

Query: 299 HRGSYHPIMHLHERSLSVLACRYVDEVIIGA 329
                  IM + ER LSVL+C+YVD VII A
Sbjct: 242 ------TIMTMKERVLSVLSCKYVDAVIIDA 266

Ethanolamine-phosphate cytidylyltransferase which catalyzes the second step of phosphatidylethanolamine biosynthesis. Involved in the maintenance of plasma membrane and required for proper sporulation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|O74975|PCY1_SCHPO Probable choline-phosphate cytidylyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1827.02c PE=1 SV=3

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/138 (44%), Positives = 84/138 (60%), Gaps = 6/138 (4%)

Query: 66  VRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           VRVY DG FDL H GH   L QAK +     L+VG+ +D+     KG  V++ +ER   +
Sbjct: 102 VRVYADGVFDLFHIGHMRQLEQAKKVFPNVHLIVGLPNDQLTHRLKGLTVMNDKERAEAL 161

Query: 124 SGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYK 183
              KWVDEV+ NAP+ IT +F+     EHKID++ H D P    D  D Y   KKVG++ 
Sbjct: 162 RHCKWVDEVLENAPWVITPEFLE----EHKIDFVAHDDIPYASDDSGDIYLPVKKVGKFI 217

Query: 184 QIKRTEGVSSTDIVGRIL 201
             KRTEGVS++D++ RI+
Sbjct: 218 PTKRTEGVSTSDLITRII 235

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 5

>sp|P49587|PCY1_PLAFK Choline-phosphate cytidylyltransferase OS=Plasmodium falciparum (isolate K1 / Thailand) GN=CTP PE=2 SV=1

 Score =  112 bits (279), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 90/163 (55%), Gaps = 24/163 (14%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALGDE--LVVGVVSDEEIIANKGPPVLSMEERLA 121
           K V +Y DG +D++H GH   L QAK L +   L+VGV SD E    KG  V ++EER  
Sbjct: 90  KNVVIYADGVYDMLHLGHMKQLEQAKKLFENTTLIVGVTSDNETKLFKGQVVQTLEERTE 149

Query: 122 LVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDP------------------ 163
            +  ++WVDE+I+  P+ +T +F+ +    +KIDY+ H D P                  
Sbjct: 150 TLKHIRWVDEIISPCPWVVTPEFLEK----YKIDYVAHDDIPYANNQKKKKKKKSKGKSF 205

Query: 164 CLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMED 206
               +  D YA  K+ G++K  +RTEGVS+TD++ RIL + ED
Sbjct: 206 SFDEENEDIYAWLKRAGKFKATQRTEGVSTTDLIVRILKNYED 248

Controls phosphatidylcholine synthesis.

Plasmodium falciparum (isolate K1 / Thailand) (taxid: 5839)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
224144239	401	predicted protein [Populus trichocarpa]	0.939	0.887	0.861	0.0
449507378	423	PREDICTED: ethanolamine-phosphate cytidy	0.928	0.832	0.831	1e-170
225462533	431	PREDICTED: ethanolamine-phosphate cytidy	0.939	0.825	0.812	1e-170
356513223	420	PREDICTED: ethanolamine-phosphate cytidy	0.923	0.833	0.798	1e-168
356523761	420	PREDICTED: ethanolamine-phosphate cytidy	0.918	0.828	0.805	1e-168
224090479	395	predicted protein [Populus trichocarpa]	0.868	0.832	0.802	1e-165
357520661	418	Ethanolamine-phosphate cytidylyltransfer	0.928	0.842	0.784	1e-159
217074798	418	unknown [Medicago truncatula] gi|3885155	0.928	0.842	0.781	1e-158
357520663	431	Ethanolamine-phosphate cytidylyltransfer	0.928	0.816	0.754	1e-156
255570558	377	conserved hypothetical protein [Ricinus	0.773	0.777	0.864	1e-145

>gi|224144239|ref|XP_002325231.1| predicted protein [Populus trichocarpa] gi|222866665|gb|EEF03796.1| predicted protein [Populus trichocarpa]

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/360 (86%), Positives = 334/360 (92%), Gaps = 4/360 (1%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSD--CFHKKKC 60
           MEYES+S IWDG+YYYPH FGGLMLTAALLG+STSYFGG+G  SLP++WSD   FHKKKC
Sbjct: 1   MEYESSSSIWDGVYYYPHLFGGLMLTAALLGLSTSYFGGLGFSSLPYMWSDLGIFHKKKC 60

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
            +KKR+RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI+ANKGPPVLSMEERL
Sbjct: 61  -QKKRIRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIVANKGPPVLSMEERL 119

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
           ALVSGLKWVDEVIA+APYAITE+FMN LFNEHKIDYIIHGDDPCLLPDGTDAYALAKK G
Sbjct: 120 ALVSGLKWVDEVIADAPYAITEKFMNSLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKAG 179

Query: 181 RYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNN-ASLPRDPLRAIQSKDAHLSQFLPT 239
           RYKQIKRTEGVSSTDIVGRILSS++DTKACE+H++ +SLP   L+  QS  AH+SQFLPT
Sbjct: 180 RYKQIKRTEGVSSTDIVGRILSSLKDTKACENHDDSSSLPGIALKGSQSNSAHISQFLPT 239

Query: 240 SRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEH 299
           SRRIVQFSN KGPGPNARVVYIDGAFDLFHAGHVEIL+ ARQLGDFLLVGI+TDQIVSEH
Sbjct: 240 SRRIVQFSNGKGPGPNARVVYIDGAFDLFHAGHVEILRSARQLGDFLLVGIHTDQIVSEH 299

Query: 300 RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLT 359
           RG  HPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDM+TTFNI LVVHGTV+E N+ L 
Sbjct: 300 RGKGHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMVTTFNITLVVHGTVAENNSLLA 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507378|ref|XP_004163014.1| PREDICTED: ethanolamine-phosphate cytidylyltransferase-like [Cucumis sativus]

 Score =  605 bits (1561), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 296/356 (83%), Positives = 312/356 (87%), Gaps = 4/356 (1%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSD--CFHKKKC 60
           M+YESNSWIWDG+YYYPH FGGLMLTAALLG STSYF GIGV SLP  WSD   F K+K 
Sbjct: 4   MDYESNSWIWDGVYYYPHLFGGLMLTAALLGFSTSYFSGIGVPSLPFFWSDFGIFQKRKS 63

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
            +KKR+RVYMDGCFDLMH+GHANALRQAKALGDELVVGVVSDEEIIANKGPPVL MEERL
Sbjct: 64  -EKKRIRVYMDGCFDLMHFGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLPMEERL 122

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
           ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK G
Sbjct: 123 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKAG 182

Query: 181 RYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTS 240
           RYKQIKRTEGVSSTDIVGRILSSM D    EDHN  SL  D ++   S  A LS FLPTS
Sbjct: 183 RYKQIKRTEGVSSTDIVGRILSSMNDATNSEDHNATSLNGDSMKESPSHGA-LSHFLPTS 241

Query: 241 RRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHR 300
            RIVQFSN +GPGPNAR+VYIDGAFDLFHAGH+EILK ARQLGDFLLVGI+ DQ VS  R
Sbjct: 242 HRIVQFSNGRGPGPNARIVYIDGAFDLFHAGHIEILKIARQLGDFLLVGIHNDQTVSNLR 301

Query: 301 GSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNT 356
           G   PIMHLHERSLSVL CRYVDEVIIGAPWE+T+DMITTFNI LVVHGTV+E N+
Sbjct: 302 GKQFPIMHLHERSLSVLGCRYVDEVIIGAPWEITRDMITTFNISLVVHGTVAENNS 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462533|ref|XP_002265606.1| PREDICTED: ethanolamine-phosphate cytidylyltransferase [Vitis vinifera]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 299/368 (81%), Positives = 325/368 (88%), Gaps = 12/368 (3%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGV-FSLPHLWSD--CFHKKK 59
           M++E+NSWIW+G+Y+YPH FGG+MLTAA+LG+STS+FGGI V  SL + W D   FHK+K
Sbjct: 1   MDFENNSWIWEGVYHYPHLFGGIMLTAAVLGLSTSFFGGISVPSSLAYFWPDLGIFHKRK 60

Query: 60  CGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEER 119
            GKK R+RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEER
Sbjct: 61  HGKK-RIRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEER 119

Query: 120 LALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKV 179
           L LVSGLKWVDEVIANAPYAITEQFM+ LFNEHKIDYIIHGDDPCLLPDGTDAYALAKK 
Sbjct: 120 LVLVSGLKWVDEVIANAPYAITEQFMDTLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKA 179

Query: 180 GRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASL---PRDPLRAI-----QSKDA 231
           GRYKQIKRTEGVSSTDIVGRILS ++DTK  EDHN ++     RD          QSK  
Sbjct: 180 GRYKQIKRTEGVSSTDIVGRILSYIKDTKTHEDHNGSTSLHGERDNTNEAEGEKCQSKGL 239

Query: 232 HLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIY 291
           HLS FLPTSRRIVQFSN KGPGPNARVVYIDGAFDLFHAGHVEILK ARQLGDFLLVGI+
Sbjct: 240 HLSHFLPTSRRIVQFSNGKGPGPNARVVYIDGAFDLFHAGHVEILKNARQLGDFLLVGIH 299

Query: 292 TDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTV 351
           TDQ VSEHRG+++PIMHLHERSLSVLACRYVDEVIIGAPW+VTKDMITTFNI LVVHGTV
Sbjct: 300 TDQTVSEHRGAHYPIMHLHERSLSVLACRYVDEVIIGAPWDVTKDMITTFNISLVVHGTV 359

Query: 352 SETNTPLT 359
           +E+N+ L 
Sbjct: 360 AESNSFLN 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513223|ref|XP_003525313.1| PREDICTED: ethanolamine-phosphate cytidylyltransferase-like [Glycine max]

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 285/357 (79%), Positives = 322/357 (90%), Gaps = 7/357 (1%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGV--FSLPHLWSD--CFHKK 58
           M+YE+NSWIW+G+ YYP  FGGLM+TAALLG+STSYFGGIGV   SLP  WS+   FHKK
Sbjct: 1   MDYENNSWIWEGVNYYPRVFGGLMVTAALLGLSTSYFGGIGVPYLSLPCSWSNLGIFHKK 60

Query: 59  KCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEE 118
           K GK+ R+RVYMDGCFDLMHYGHANALRQAKALGDELVVG+VSDEEI+ANKGPPVLSMEE
Sbjct: 61  KSGKR-RIRVYMDGCFDLMHYGHANALRQAKALGDELVVGLVSDEEIVANKGPPVLSMEE 119

Query: 119 RLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK 178
           RLALVSGLKWVDEVI +APYAITEQF+NRLF+E+KIDY+IHGDDPCLLPDGTDAYA AKK
Sbjct: 120 RLALVSGLKWVDEVITDAPYAITEQFLNRLFHEYKIDYVIHGDDPCLLPDGTDAYAAAKK 179

Query: 179 VGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLP 238
            GRYKQIKRTEGVSSTDIVGRILSS+ D K C+DHN   +   P    QS+ +H++QFLP
Sbjct: 180 AGRYKQIKRTEGVSSTDIVGRILSSLRDQKNCDDHNGTEV--KPQEENQSQASHIAQFLP 237

Query: 239 TSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSE 298
           TSRRIVQFSN KGPGPN+R+VYIDGAFDLFHAGHVEILK+AR+LGDFLLVGI++D+ VSE
Sbjct: 238 TSRRIVQFSNGKGPGPNSRIVYIDGAFDLFHAGHVEILKRARELGDFLLVGIHSDETVSE 297

Query: 299 HRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETN 355
           HRG+++PIMHLHERSLSVLACRYVDEVIIG+PWE+T DMITTFNI +VVHGTVSE +
Sbjct: 298 HRGNHYPIMHLHERSLSVLACRYVDEVIIGSPWEITNDMITTFNISVVVHGTVSEKS 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523761|ref|XP_003530503.1| PREDICTED: ethanolamine-phosphate cytidylyltransferase-like [Glycine max]

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 286/355 (80%), Positives = 321/355 (90%), Gaps = 7/355 (1%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGV--FSLPHLWSD--CFHKK 58
           M+YE+NSWIW+G+ YYP  FGGLM+TAALLG+STSYFGGIGV   SLP  WS+   FH+K
Sbjct: 1   MDYENNSWIWEGVNYYPCVFGGLMVTAALLGLSTSYFGGIGVPYLSLPCSWSNLGIFHQK 60

Query: 59  KCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEE 118
           K GK+ R+RVYMDGCFDLMHYGHANALRQAKALGDELVVG+VSDEEI+ANKGPPVLSMEE
Sbjct: 61  KSGKR-RIRVYMDGCFDLMHYGHANALRQAKALGDELVVGLVSDEEIVANKGPPVLSMEE 119

Query: 119 RLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK 178
           RLALVSGLKWVDEVI +APYAITEQF+NRLF+E+KIDY+IHGDDPCLLPDGTDAYA AKK
Sbjct: 120 RLALVSGLKWVDEVITDAPYAITEQFLNRLFHEYKIDYVIHGDDPCLLPDGTDAYAAAKK 179

Query: 179 VGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLP 238
            GRYKQIKRTEGVSSTDIVGRILSS+ D K CEDHN   +   P    QSK +H++QFLP
Sbjct: 180 AGRYKQIKRTEGVSSTDIVGRILSSLRDQKNCEDHNGTEV--KPQEENQSKASHIAQFLP 237

Query: 239 TSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSE 298
           TSRRIVQFSN KGPGPNAR+VYIDGAFDLFHAGHVEILK+AR+LGDFLLVGI++D+ VSE
Sbjct: 238 TSRRIVQFSNGKGPGPNARIVYIDGAFDLFHAGHVEILKRARELGDFLLVGIHSDETVSE 297

Query: 299 HRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSE 353
           HRG+++PIMHLHERSLSVLACRYVDEVIIG+PWE+T DMITTFNI +VVHGTV+E
Sbjct: 298 HRGNHYPIMHLHERSLSVLACRYVDEVIIGSPWEITNDMITTFNISVVVHGTVAE 352

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090479|ref|XP_002308992.1| predicted protein [Populus trichocarpa] gi|222854968|gb|EEE92515.1| predicted protein [Populus trichocarpa]

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 288/359 (80%), Positives = 308/359 (85%), Gaps = 30/359 (8%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSD--CFHKKKC 60
           MEYES+S IWDG+YYYPH FGGLMLTAALLG+STSYFGG+G   LP++WSD   F+KKK 
Sbjct: 1   MEYESSSSIWDGVYYYPHLFGGLMLTAALLGLSTSYFGGLGYSYLPYMWSDLGVFYKKKS 60

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
            +KKR+RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI+ANKGPPVLSMEERL
Sbjct: 61  -EKKRIRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIVANKGPPVLSMEERL 119

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
           ALVSGLKWVDEVIANAPYAITE+FMN LFNEHKIDYIIHGDDPCLLPDGTDAYALAKK G
Sbjct: 120 ALVSGLKWVDEVIANAPYAITEKFMNSLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKAG 179

Query: 181 RYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTS 240
           RYKQIKRTEGVSSTDIVG                            QS  + +SQFLPTS
Sbjct: 180 RYKQIKRTEGVSSTDIVGS---------------------------QSNSSRISQFLPTS 212

Query: 241 RRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHR 300
           RRIVQFSN KGPGPNARVVYIDGAFDLFHAGHVEIL+ ARQLGDFLLVGI+TDQIVSEHR
Sbjct: 213 RRIVQFSNGKGPGPNARVVYIDGAFDLFHAGHVEILRSARQLGDFLLVGIHTDQIVSEHR 272

Query: 301 GSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLT 359
           G  HPIMHLHERSLSVLAC YVDEVIIGAPWEVT+DM+TTFNI LVVHGTV+E+N+ L 
Sbjct: 273 GKGHPIMHLHERSLSVLACSYVDEVIIGAPWEVTRDMVTTFNISLVVHGTVAESNSLLA 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520661|ref|XP_003630619.1| Ethanolamine-phosphate cytidylyltransferase [Medicago truncatula] gi|355524641|gb|AET05095.1| Ethanolamine-phosphate cytidylyltransferase [Medicago truncatula]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 280/357 (78%), Positives = 317/357 (88%), Gaps = 5/357 (1%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPH--LWSDCFHKKKC 60
           M+YESNSWIW+G+YYYPH FGGLM+TAALLG+STSYFG IGV SLP    W +   KKK 
Sbjct: 1   MDYESNSWIWEGVYYYPHLFGGLMVTAALLGLSTSYFGVIGVPSLPLPCSWYN-LGKKKK 59

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
             K+RVRVYMDGCFDLMHYGHANALRQAKALGDELVVG+VSDEEI+ANKGPPVLSM+ERL
Sbjct: 60  TGKRRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGLVSDEEIVANKGPPVLSMDERL 119

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
           ALVSGLKWVDEVI +APYAITE F+NRLF+E+ IDY+IHGDDPCLLPDGTDAYA AKK G
Sbjct: 120 ALVSGLKWVDEVITDAPYAITETFLNRLFHEYNIDYVIHGDDPCLLPDGTDAYAAAKKAG 179

Query: 181 RYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTS 240
           RYKQIKRTEGVSSTDIVGRI+SS+++ K CED N   +   P    QSK +H+SQFLPTS
Sbjct: 180 RYKQIKRTEGVSSTDIVGRIMSSLKEQKICEDRNGTDV--KPQEECQSKVSHISQFLPTS 237

Query: 241 RRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHR 300
           RRIVQFSN KGPGPNAR+VYIDGAFDLFHAGHV++LK+AR+LGDFLLVGI++D+ VSE+R
Sbjct: 238 RRIVQFSNGKGPGPNARIVYIDGAFDLFHAGHVQMLKRARELGDFLLVGIHSDETVSENR 297

Query: 301 GSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTP 357
           G+++PIMHLHERSLSVLA RYVDEVIIGAP E+TKDMITTFNI LVVHGTV+E + P
Sbjct: 298 GNHYPIMHLHERSLSVLASRYVDEVIIGAPLEITKDMITTFNISLVVHGTVAEKSLP 354

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074798|gb|ACJ85759.1| unknown [Medicago truncatula] gi|388515515|gb|AFK45819.1| unknown [Medicago truncatula]

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 279/357 (78%), Positives = 316/357 (88%), Gaps = 5/357 (1%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPH--LWSDCFHKKKC 60
           M+YESNSWIW+G+YYYPH FGGLM+TAALLG+STSYFG IGV SLP    W +   KKK 
Sbjct: 1   MDYESNSWIWEGVYYYPHLFGGLMVTAALLGLSTSYFGVIGVPSLPLPCSWYN-LGKKKK 59

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
             K+RV VYMDGCFDLMHYGHANALRQAKALGDELVVG+VSDEEI+ANKGPPVLSM+ERL
Sbjct: 60  TGKRRVHVYMDGCFDLMHYGHANALRQAKALGDELVVGLVSDEEIVANKGPPVLSMDERL 119

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
           ALVSGLKWVDEVI +APYAITE F+NRLF+E+ IDY+IHGDDPCLLPDGTDAYA AKK G
Sbjct: 120 ALVSGLKWVDEVITDAPYAITETFLNRLFHEYNIDYVIHGDDPCLLPDGTDAYAAAKKAG 179

Query: 181 RYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTS 240
           RYKQIKRTEGVSSTDIVGRI+SS+++ K CED N   +   P    QSK +H+SQFLPTS
Sbjct: 180 RYKQIKRTEGVSSTDIVGRIMSSLKEQKICEDRNGTDV--KPQEECQSKVSHISQFLPTS 237

Query: 241 RRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHR 300
           RRIVQFSN KGPGPNAR+VYIDGAFDLFHAGHV++LK+AR+LGDFLLVGI++D+ VSE+R
Sbjct: 238 RRIVQFSNGKGPGPNARIVYIDGAFDLFHAGHVQMLKRARELGDFLLVGIHSDETVSENR 297

Query: 301 GSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTP 357
           G+++PIMHLHERSLSVLA RYVDEVIIGAP E+TKDMITTFNI LVVHGTV+E + P
Sbjct: 298 GNHYPIMHLHERSLSVLASRYVDEVIIGAPLEITKDMITTFNISLVVHGTVAEKSLP 354

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520663|ref|XP_003630620.1| Ethanolamine-phosphate cytidylyltransferase [Medicago truncatula] gi|355524642|gb|AET05096.1| Ethanolamine-phosphate cytidylyltransferase [Medicago truncatula]

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 279/370 (75%), Positives = 316/370 (85%), Gaps = 18/370 (4%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPH--LWSDCFHKKKC 60
           M+YESNSWIW+G+YYYPH FGGLM+TAALLG+STSYFG IGV SLP    W +   KKK 
Sbjct: 1   MDYESNSWIWEGVYYYPHLFGGLMVTAALLGLSTSYFGVIGVPSLPLPCSWYN-LGKKKK 59

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
             K+RVRVYMDGCFDLMHYGHANALRQAKALGDELVVG+VSDEEI+ANKGPPVLSM+ERL
Sbjct: 60  TGKRRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGLVSDEEIVANKGPPVLSMDERL 119

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
           ALVSGLKWVDEVI +APYAITE F+NRLF+E+ IDY+IHGDDPCLLPDGTDAYA AKK G
Sbjct: 120 ALVSGLKWVDEVITDAPYAITETFLNRLFHEYNIDYVIHGDDPCLLPDGTDAYAAAKKAG 179

Query: 181 RYKQIKRTEGVSSTDIV-------------GRILSSMEDTKACEDHNNASLPRDPLRAIQ 227
           RYKQIKRTEGVSSTDI              GRI+SS+++ K CED N   +   P    Q
Sbjct: 180 RYKQIKRTEGVSSTDISSYDEIYTWTSLTHGRIMSSLKEQKICEDRNGTDV--KPQEECQ 237

Query: 228 SKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLL 287
           SK +H+SQFLPTSRRIVQFSN KGPGPNAR+VYIDGAFDLFHAGHV++LK+AR+LGDFLL
Sbjct: 238 SKVSHISQFLPTSRRIVQFSNGKGPGPNARIVYIDGAFDLFHAGHVQMLKRARELGDFLL 297

Query: 288 VGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVV 347
           VGI++D+ VSE+RG+++PIMHLHERSLSVLA RYVDEVIIGAP E+TKDMITTFNI LVV
Sbjct: 298 VGIHSDETVSENRGNHYPIMHLHERSLSVLASRYVDEVIIGAPLEITKDMITTFNISLVV 357

Query: 348 HGTVSETNTP 357
           HGTV+E + P
Sbjct: 358 HGTVAEKSLP 367

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570558|ref|XP_002526236.1| conserved hypothetical protein [Ricinus communis] gi|223534430|gb|EEF36133.1| conserved hypothetical protein [Ricinus communis]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 255/295 (86%), Positives = 268/295 (90%), Gaps = 2/295 (0%)

Query: 66  VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
           +RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVL MEERLALVSG
Sbjct: 20  IRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLPMEERLALVSG 79

Query: 126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
           LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK+ GRYKQI
Sbjct: 80  LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKRAGRYKQI 139

Query: 186 KRTEGVSSTDIVGRILSSMEDTKACEDHNNA-SLPRDPLRAIQSKDAHLSQFLPTSRRIV 244
           KRTEGVSSTDIVGRIL +  D K  E H++  SLP D  +  Q    HLSQFLPTSRRIV
Sbjct: 140 KRTEGVSSTDIVGRILFA-NDAKVSECHDDKLSLPGDACKGNQCNSVHLSQFLPTSRRIV 198

Query: 245 QFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYH 304
           QFSN KGPGPNARVVYIDGAFDLFHAGHVEIL+ ARQLGDFLLVGI+TDQIVSEHRG ++
Sbjct: 199 QFSNGKGPGPNARVVYIDGAFDLFHAGHVEILRSARQLGDFLLVGIHTDQIVSEHRGEHY 258

Query: 305 PIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLT 359
           PIMHLHERSLSVLACRYVDEVIIGAPWEV+KDMITTFNI LVVHGTV+E N+ L 
Sbjct: 259 PIMHLHERSLSVLACRYVDEVIIGAPWEVSKDMITTFNISLVVHGTVAECNSLLA 313

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
TAIR|locus:2064123	421	PECT1 "phosphorylethanolamine	0.765	0.688	0.715	1.9e-113
DICTYBASE|DDB_G0270298	360	pctA "cytidylyltransferase dom	0.728	0.766	0.536	2.3e-78
RGD|619970	404	Pcyt2 "phosphate cytidylyltran	0.348	0.326	0.529	2.3e-70
MGI|MGI:1915921	404	Pcyt2 "phosphate cytidylyltran	0.348	0.326	0.529	2.3e-70
UNIPROTKB|F5H8B1	407	PCYT2 "Ethanolamine-phosphate	0.348	0.324	0.529	2.3e-70
UNIPROTKB|I3L2Q1	308	PCYT2 "Ethanolamine-phosphate	0.704	0.866	0.486	2.6e-70
UNIPROTKB|Q99447	389	PCYT2 "Ethanolamine-phosphate	0.730	0.712	0.470	4.9e-69
WB|WBGene00021352	377	Y37E3.11 [Caenorhabditis elega	0.770	0.774	0.449	1e-68
UNIPROTKB|Q5EA75	389	PCYT2 "Ethanolamine-phosphate	0.730	0.712	0.470	1.7e-68
ZFIN|ZDB-GENE-041010-132	397	pcyt2 "phosphate cytidylyltran	0.730	0.697	0.465	7.2e-68

TAIR|locus:2064123 PECT1 "phosphorylethanolamine cytidylyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
 Identities = 214/299 (71%), Positives = 251/299 (83%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             VRVYMDGCFD+MHYGH NALRQA+ALGD+LVVGVVSDEEIIANKGPPV  + ER+ +V  
Sbjct:    55 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDEEIIANKGPPVTPLHERMTMVKA 114

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
             +KWVDEVI++APYAITE FM +LF+E++IDYIIHGDDPC+LPDGTDAYALAKK GRYKQI
Sbjct:   115 VKWVDEVISDAPYAITEDFMKKLFDEYQIDYIIHGDDPCVLPDGTDAYALAKKAGRYKQI 174

Query:   186 KRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRD-------PL--RAIQSKDAHLSQF 236
             KRTEGVSSTDIVGR+L  + +    + H+ +SL R        P       S    +S F
Sbjct:   175 KRTEGVSSTDIVGRMLLCVRERSISDTHSRSSLQRQFSHGHSSPKFEDGASSAGTRVSHF 234

Query:   237 LPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV 296
             LPTSRRIVQFSN KGPGP+AR++YIDGAFDLFHAGHVEIL++AR+LGDFLLVGI+ DQ V
Sbjct:   235 LPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRRARELGDFLLVGIHNDQTV 294

Query:   297 SEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETN 355
             S  RG++ PIM+LHERSLSVLACRYVDEVIIGAPWEV++D ITTF+I LVVHGTV+E++
Sbjct:   295 SAKRGAHRPIMNLHERSLSVLACRYVDEVIIGAPWEVSRDTITTFDISLVVHGTVAESD 353

GO:0003824 "catalytic activity" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=TAS

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

DICTYBASE|DDB_G0270298 pctA "cytidylyltransferase domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 156/291 (53%), Positives = 205/291 (70%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             +RVY+DGCFDLMH+GHANALRQA+ LGD LVVGV +DEEI  NKGPPV++ +ER   V  
Sbjct:    10 IRVYVDGCFDLMHFGHANALRQARELGDILVVGVHTDEEIAKNKGPPVMNEQERYKAVRA 69

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
              KW DEV   APY +TE++++ L      D+ +HG+D  +  DG D Y   KK G+++ I
Sbjct:    70 CKWADEVAEGAPYTLTEEYLDSL----NCDFCVHGEDISVGADGKDVYEGIKKSGKFRFI 125

Query:   186 KRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAI-------QSKDAHLSQFLP 238
             KRTEGVS+T++VGR+L   +D       N +     PL  +       QS    LS FLP
Sbjct:   126 KRTEGVSTTELVGRMLLCTKDHL----QNVSGEQTSPLGGVNPNVLHKQSPYTSLSHFLP 181

Query:   239 TSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSE 298
             T+R+IVQFS  + P PN +++Y+DG FDLFH GH E LK+AR LGD+L+VG++ D++V E
Sbjct:   182 TTRKIVQFSEGRSPKPNDKIIYMDGGFDLFHVGHTEALKQARALGDYLIVGVHDDRVVHE 241

Query:   299 HRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
              +GS  PIM+LHER LSVL+CRYVDEV+IGAP+ VTKDMI + +I +VVHG
Sbjct:   242 QKGSNFPIMNLHERVLSVLSCRYVDEVVIGAPFSVTKDMIDSLHINVVVHG 292

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=IEA;ISS

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008654 "phospholipid biosynthetic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

RGD|619970 Pcyt2 "phosphate cytidylyltransferase 2, ethanolamine" [Rattus norvegicus (taxid:10116)]

 Score = 399 (145.5 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
 Identities = 72/136 (52%), Positives = 100/136 (73%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER  +V  
Sbjct:    23 VRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQA 82

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
             +KWVDEV+  APY  T + +++    H  D+ +HG+D  L  DG D Y   K+ GRY++ 
Sbjct:    83 IKWVDEVVPAAPYVTTLETLDK----HNCDFCVHGNDITLTVDGRDTYEEVKQAGRYREC 138

Query:   186 KRTEGVSSTDIVGRIL 201
             KRT+GVS+TD+VGR+L
Sbjct:   139 KRTQGVSTTDLVGRML 154

GO:0003824 "catalytic activity" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=IDA

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA;TAS

GO:0009058 "biosynthetic process" evidence=IEA

MGI|MGI:1915921 Pcyt2 "phosphate cytidylyltransferase 2, ethanolamine" [Mus musculus (taxid:10090)]

 Score = 399 (145.5 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
 Identities = 72/136 (52%), Positives = 100/136 (73%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER  +V  
Sbjct:    23 VRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQA 82

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
             +KWVDEV+  APY  T + +++    H  D+ +HG+D  L  DG D Y   K+ GRY++ 
Sbjct:    83 IKWVDEVVPAAPYVTTLETLDK----HNCDFCVHGNDITLTVDGRDTYEEVKQAGRYREC 138

Query:   186 KRTEGVSSTDIVGRIL 201
             KRT+GVS+TD+VGR+L
Sbjct:   139 KRTQGVSTTDLVGRML 154

GO:0003824 "catalytic activity" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008654 "phospholipid biosynthetic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|F5H8B1 PCYT2 "Ethanolamine-phosphate cytidylyltransferase" [Homo sapiens (taxid:9606)]

 Score = 393 (143.4 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
 Identities = 72/136 (52%), Positives = 101/136 (74%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER  +V  
Sbjct:    23 VRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQA 82

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
             +KWVDEV+  APY  T + +++ +N    D+ +HG+D  L  DG D Y   K+ GRY++ 
Sbjct:    83 IKWVDEVVPAAPYVTTLETLDK-YN---CDFCVHGNDITLTVDGRDTYEEVKQAGRYREC 138

Query:   186 KRTEGVSSTDIVGRIL 201
             KRT+GVS+TD+VGR+L
Sbjct:   139 KRTQGVSTTDLVGRML 154

GO:0009058 "biosynthetic process" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=IEA

UNIPROTKB|I3L2Q1 PCYT2 "Ethanolamine-phosphate cytidylyltransferase" [Homo sapiens (taxid:9606)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 140/288 (48%), Positives = 203/288 (70%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER  +V  
Sbjct:    23 VRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQA 82

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
             +KWVDEV+  APY  T + +++ +N    D+ +HG+D  L  DG D Y   K+ GRY++ 
Sbjct:    83 IKWVDEVVPAAPYVTTLETLDK-YN---CDFCVHGNDITLTVDGRDTYEEVKQAGRYREC 138

Query:   186 KRTEGVSSTDIVGRILSSMEDTKACEDHNNASLP--RDPLRAIQSKDAHLSQFLPTSRRI 243
             KRT+GVS+TD+VGR+L     TKA   H+++  P  R+P   +       SQFL TS++I
Sbjct:   139 KRTQGVSTTDLVGRMLLV---TKA---HHSSQCPGGRNPWTGV-------SQFLQTSQKI 185

Query:   244 VQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQIVSEHRG 301
             +QF++ K P P   V+Y+ GAFDLFH GHV+ L+K  +L +  +++ G++ DQ V+ ++G
Sbjct:   186 IQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKG 245

Query:   302 SYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
               +PIM+LHER+LSVLACRYV EV+IGAP+ VT ++++ F + LV HG
Sbjct:   246 KNYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVCHG 293

GO:0003824 "catalytic activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|Q99447 PCYT2 "Ethanolamine-phosphate cytidylyltransferase" [Homo sapiens (taxid:9606)]

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 138/293 (47%), Positives = 204/293 (69%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER  +V  
Sbjct:    23 VRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQA 82

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
             +KWVDEV+  APY  T + +++ +N    D+ +HG+D  L  DG D Y   K+ GRY++ 
Sbjct:    83 IKWVDEVVPAAPYVTTLETLDK-YN---CDFCVHGNDITLTVDGRDTYEEVKQAGRYREC 138

Query:   186 KRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLP 238
             KRT+GVS+TD+VGR+L       SS E +    ++ + S  + P    ++    +SQFL 
Sbjct:   139 KRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYAD-SFGKCP--GGRNPWTGVSQFLQ 195

Query:   239 TSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQIV 296
             TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K  +L +  +++ G++ DQ V
Sbjct:   196 TSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEV 255

Query:   297 SEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
             + ++G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT ++++ F + LV HG
Sbjct:   256 NHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVCHG 308

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA;TAS

GO:0008654 "phospholipid biosynthetic process" evidence=TAS

GO:0005575 "cellular_component" evidence=ND

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006644 "phospholipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046474 "glycerophospholipid biosynthetic process" evidence=TAS

WB|WBGene00021352 Y37E3.11 [Caenorhabditis elegans (taxid:6239)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 138/307 (44%), Positives = 206/307 (67%)

Query:    67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
             RV+ DGC+D++H+GHAN LRQAK  G +L+VGV +DEEI  +KGPPV + +ER  +V+G+
Sbjct:    14 RVWADGCYDMVHFGHANQLRQAKQFGQKLIVGVHNDEEIRLHKGPPVFNEQERYRMVAGI 73

Query:   127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK 186
             KWVDEV+ NAPYA T + +++    +  D+ +HGDD  L  DG D Y   K   RY++ K
Sbjct:    74 KWVDEVVENAPYATTVETLDK----YDCDFCVHGDDITLTADGKDTYQEVKDHQRYRECK 129

Query:   187 RTEGVSSTDIVGRILSSMEDTKACEDH--NNASLPRDPLRAI--QSKD-------AHLSQ 235
             RT GVS+TD+VGR+L   ++    ++H   +    R    AI   SKD         +S+
Sbjct:   130 RTCGVSTTDLVGRMLLLTKNHHTQDEHIEQHVERARSLSTAILEYSKDNVAMSPWTRVSR 189

Query:   236 FLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQI 295
             F+PT+  I++F+  + P P  +VVY+ G+FDLFH GH+  L+KA++ GD+L+VGI +DQ 
Sbjct:   190 FIPTTTTILEFAEGRPPKPTDKVVYVTGSFDLFHIGHLAFLEKAKEFGDYLIVGILSDQT 249

Query:   296 VSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETN 355
             V++++GS HPIM +HER LSVLA + V+EV+ GAP+E+T D++  FN+  V++G     +
Sbjct:   250 VNQYKGSNHPIMSIHERVLSVLAYKPVNEVVFGAPYEITSDILDQFNVQAVINGFRDNNS 309

Query:   356 TPLTVSL 362
             + +  SL
Sbjct:   310 SVVNSSL 316

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q5EA75 PCYT2 "Ethanolamine-phosphate cytidylyltransferase" [Bos taurus (taxid:9913)]

 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 138/293 (47%), Positives = 202/293 (68%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER  +V  
Sbjct:    23 VRVWCDGCYDMVHYGHSNQLRQARAMGDHLIVGVHTDEEIAKHKGPPVFTQEERYKMVQA 82

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
             +KWVDEV+  APY  T + +++ +N    D+ +HG+D  L  DG D Y   K+ GRY++ 
Sbjct:    83 IKWVDEVVPAAPYVTTLETLDK-YN---CDFCVHGNDITLTVDGRDTYEEVKQAGRYREC 138

Query:   186 KRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLP 238
             KRT+GVS+TD+VGR+L       SS E +    ++ + S  + P    ++    +SQFL 
Sbjct:   139 KRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYAD-SFGKCP--GGRNPWTGVSQFLQ 195

Query:   239 TSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQIV 296
             TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K   L +  +++ G++ DQ V
Sbjct:   196 TSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVYGLAERPYVIAGLHFDQEV 255

Query:   297 SEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
             + ++G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT +++  F + LV HG
Sbjct:   256 NHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYSVTAELLDHFKVDLVCHG 308

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-041010-132 pcyt2 "phosphate cytidylyltransferase 2, ethanolamine" [Danio rerio (taxid:7955)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 136/292 (46%), Positives = 197/292 (67%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             +RV+ DGC+D++HYGH+N LRQAKA+GD LVVGV +DEEI  +KGPPV +  ER  ++  
Sbjct:    31 IRVWCDGCYDMVHYGHSNQLRQAKAMGDYLVVGVHTDEEIAKHKGPPVFTQAERYKMIRA 90

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
             +KWVDE++  APY  T + +++ +N    D+ +HGDD  L  DG D Y   K+ GRY++ 
Sbjct:    91 IKWVDEIVEGAPYVTTLETLDK-YN---CDFCVHGDDITLTVDGKDTYDEVKRTGRYREC 146

Query:   186 KRTEGVSSTDIVGRIL------SSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPT 239
             KRT+GVS+TD+VGR+L       S  D  A + H + +  + P     S    +SQFL T
Sbjct:   147 KRTQGVSTTDLVGRMLLLTKAHHSNIDNAAYQVHTD-NFGKGPKG--HSPWTGVSQFLQT 203

Query:   240 SRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQIVS 297
             S++I+QF++ K P P   ++Y+ GAFDLFH GHV+ L+      +  +++VG++ DQ V+
Sbjct:   204 SQKIIQFASGKEPQPGDTIIYVAGAFDLFHIGHVDFLETVHGQAEKPYVIVGLHFDQEVN 263

Query:   298 EHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
              ++G  +PIM++HER LSVLACRYV EV+IGAP+ V KD++  F + LV HG
Sbjct:   264 RYKGKNYPIMNIHERILSVLACRYVSEVVIGAPYAVEKDLLDHFKVDLVCHG 315

GO:0003824 "catalytic activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q55BZ4	PCY2_DICDI	2, ., 7, ., 7, ., 1, 4	0.5374	0.7361	0.775	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	0.766
3rd Layer	2.7.7.39	LOW CONFIDENCE prediction!
4th Layer	2.7.7.14	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_XVIII0261	ethanolamine-phosphate cytidylyltransferase (EC-2.7.7.14) (401 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0028024201	phosphotransferase, alcohol group as acceptor/kinase (EC-2.7.1.82) (386 aa)						•	•		0.901
	gw1.III.525.1	SubName- Full=Putative uncharacterized protein; (343 aa)						•			0.900
	gw1.X.421.1	ethanolaminephosphotransferase (EC-2.7.8.1) (383 aa)						•			0.899
	gw1.I.6971.1	choline kinase (EC-2.7.1.32) (345 aa)						•			0.899
	fgenesh4_pg.C_LG_II000596	choline kinase (EC-2.7.1.32) (360 aa)						•			0.899
	estExt_Genewise1_v1.C_LG_VIII2313	ethanolaminephosphotransferase (EC-2.7.8.1) (389 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	379
PLN02406	418	PLN02406, PLN02406, ethanolamine-phosphate cytidyl	0.0
PTZ00308	353	PTZ00308, PTZ00308, ethanolamine-phosphate cytidyl	1e-133
cd02174	150	cd02174, CCT, CTP:phosphocholine cytidylyltransfer	3e-75
cd02173	152	cd02173, ECT, CTP:phosphoethanolamine cytidylyltra	2e-57
COG0615	140	COG0615, TagD, Cytidylyltransferase [Cell envelope	5e-41
cd02170	136	cd02170, cytidylyltransferase, cytidylyltransferas	3e-38
PLN02413	294	PLN02413, PLN02413, choline-phosphate cytidylyltra	2e-35
cd02173	152	cd02173, ECT, CTP:phosphoethanolamine cytidylyltra	9e-35
PTZ00308	353	PTZ00308, PTZ00308, ethanolamine-phosphate cytidyl	1e-29
cd02174	150	cd02174, CCT, CTP:phosphocholine cytidylyltransfer	2e-28
COG0615	140	COG0615, TagD, Cytidylyltransferase [Cell envelope	1e-24
cd02170	136	cd02170, cytidylyltransferase, cytidylyltransferas	4e-23
PTZ00308	353	PTZ00308, PTZ00308, ethanolamine-phosphate cytidyl	6e-22
PLN02406	418	PLN02406, PLN02406, ethanolamine-phosphate cytidyl	1e-20
TIGR02199	144	TIGR02199, rfaE_dom_II, rfaE bifunctional protein,	5e-19
TIGR00125	66	TIGR00125, cyt_tran_rel, cytidyltransferase-like d	1e-18
cd02171	129	cd02171, G3P_Cytidylyltransferase, glycerol-3-phos	6e-16
PLN02413	294	PLN02413, PLN02413, choline-phosphate cytidylyltra	7e-16
TIGR00125	66	TIGR00125, cyt_tran_rel, cytidyltransferase-like d	9e-16
COG2870	467	COG2870, RfaE, ADP-heptose synthase, bifunctional	3e-15
TIGR01518	125	TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate c	9e-15
TIGR01518	125	TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate c	2e-14
PRK11316	473	PRK11316, PRK11316, bifunctional heptose 7-phospha	2e-14
cd02172	144	cd02172, RfaE_N, N-terminal domain of RfaE	8e-14
TIGR02199	144	TIGR02199, rfaE_dom_II, rfaE bifunctional protein,	9e-14
pfam01467	148	pfam01467, CTP_transf_2, Cytidylyltransferase	1e-13
cd02171	129	cd02171, G3P_Cytidylyltransferase, glycerol-3-phos	3e-13
cd02172	144	cd02172, RfaE_N, N-terminal domain of RfaE	3e-12
COG2870	467	COG2870, RfaE, ADP-heptose synthase, bifunctional	7e-11
PRK00777	153	PRK00777, PRK00777, phosphopantetheine adenylyltra	3e-10
PRK11316	473	PRK11316, PRK11316, bifunctional heptose 7-phospha	1e-09
pfam01467	148	pfam01467, CTP_transf_2, Cytidylyltransferase	3e-09
PRK00777	153	PRK00777, PRK00777, phosphopantetheine adenylyltra	2e-08
COG1019	158	COG1019, COG1019, Predicted nucleotidyltransferase	7e-06
PRK01170	322	PRK01170, PRK01170, phosphopantetheine adenylyltra	7e-05
cd02156	105	cd02156, nt_trans, nucleotidyl transferase superfa	2e-04
PRK01170	322	PRK01170, PRK01170, phosphopantetheine adenylyltra	3e-04
cd02064	180	cd02064, FAD_synthetase_N, FAD synthetase, N-termi	3e-04
COG1019	158	COG1019, COG1019, Predicted nucleotidyltransferase	6e-04
cd02163	153	cd02163, PPAT, Phosphopantetheine adenylyltransfer	6e-04
TIGR01510	155	TIGR01510, coaD_prev_kdtB, pantetheine-phosphate a	6e-04
COG0669	159	COG0669, CoaD, Phosphopantetheine adenylyltransfer	0.001
COG0196	304	COG0196, RibF, FAD synthase [Coenzyme metabolism]	0.002
PRK00168	159	PRK00168, coaD, phosphopantetheine adenylyltransfe	0.003
PRK13964	140	PRK13964, coaD, phosphopantetheine adenylyltransfe	0.004

>gnl|CDD|215227 PLN02406, PLN02406, ethanolamine-phosphate cytidylyltransferase

 Score =  619 bits (1597), Expect = 0.0
 Identities = 251/354 (70%), Positives = 281/354 (79%), Gaps = 11/354 (3%)

Query: 9   SWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRV 68
             I    Y      GGLML A++LG+S + FG     SLP+ W D    KK  KKK VRV
Sbjct: 1   MSISSAKYVASCLIGGLMLGASVLGLSLAGFG----SSLPYAWPDLGIFKKKKKKKPVRV 56

Query: 69  YMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW 128
           YMDGCFD+MHYGHANALRQA+ALGDELVVGVVSDEEIIANKGPPV  M ER+ +VSG+KW
Sbjct: 57  YMDGCFDMMHYGHANALRQARALGDELVVGVVSDEEIIANKGPPVTPMHERMIMVSGVKW 116

Query: 129 VDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT 188
           VDEVI +APYAITE+FMN+LFNE+ IDYIIHGDDPCLLPDGTDAYALAKK GRYKQIKRT
Sbjct: 117 VDEVIPDAPYAITEEFMNKLFNEYNIDYIIHGDDPCLLPDGTDAYALAKKAGRYKQIKRT 176

Query: 189 EGVSSTDIVGRILSSMEDTKACEDHNNASLPRD-------PLRAIQSKDAHLSQFLPTSR 241
           EGVSSTDIVGR+L  + +    + HN++SL R                   +S FLPTSR
Sbjct: 177 EGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHSQFEDGGSGSGTRVSHFLPTSR 236

Query: 242 RIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRG 301
           RIVQFSN KGPGP+AR+VYIDGAFDLFHAGHVEIL+ AR LGDFLLVGI+TDQ VS HRG
Sbjct: 237 RIVQFSNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRG 296

Query: 302 SYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETN 355
           ++ PIM+LHERSLSVLACRYVDEVIIGAPWEV+KDMITTFNI LVVHGTV+E N
Sbjct: 297 AHRPIMNLHERSLSVLACRYVDEVIIGAPWEVSKDMITTFNISLVVHGTVAENN 350

Length = 418

>gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase; Provisional

 Score =  386 bits (992), Expect = e-133
 Identities = 144/293 (49%), Positives = 204/293 (69%), Gaps = 12/293 (4%)

Query: 66  VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
           +RV++DGCFD++H+GHANALRQA+ALGDEL VG  SDEEI+ NKGPPV+  EER   +  
Sbjct: 12  IRVWVDGCFDMLHFGHANALRQARALGDELFVGCHSDEEIMRNKGPPVMHQEERYEALRA 71

Query: 126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
            KWVDEV+   PY    + + RL    + D+++HGDD  +  +G ++Y      G++K +
Sbjct: 72  CKWVDEVVEGYPYTTRLEDLERL----ECDFVVHGDDISVDLNGRNSYQEIIDAGKFKVV 127

Query: 186 KRTEGVSSTDIVGRILSSMEDTKAC-EDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIV 244
           KRTEG+S+TD+VGR+L        C + H   S+    L +        S  L TSR+IV
Sbjct: 128 KRTEGISTTDLVGRML-------LCTKSHLLKSVDEVQLESSLFPYTPTSHCLTTSRKIV 180

Query: 245 QFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYH 304
           QFSN + P P  R+VY+DG+FDLFH GH+ +L+KAR+LGD+L+VG++ DQ+V+E +GS +
Sbjct: 181 QFSNNRSPKPGDRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHEDQVVNEQKGSNY 240

Query: 305 PIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTP 357
           PIM+L+ER L VL+CRYVDEV+IGAP++VTK++I + +I +VV G  S+    
Sbjct: 241 PIMNLNERVLGVLSCRYVDEVVIGAPFDVTKEVIDSLHINVVVGGKFSDLVNE 293

Length = 353

>gnl|CDD|173925 cd02174, CCT, CTP:phosphocholine cytidylyltransferase

 Score =  229 bits (586), Expect = 3e-75
 Identities = 84/145 (57%), Positives = 103/145 (71%), Gaps = 6/145 (4%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLA 121
           + VRVY+DGCFDL HYGHANALRQAK LG  D L+VGV SDEEI  +KGPPV++ EER  
Sbjct: 1   RPVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYE 60

Query: 122 LVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR 181
            V   KWVDEV+  APY  T +F+++    +K DY+ HGDD  L  DG D Y   K  GR
Sbjct: 61  AVRHCKWVDEVVEGAPYVTTPEFLDK----YKCDYVAHGDDIYLDADGEDCYQEVKDAGR 116

Query: 182 YKQIKRTEGVSSTDIVGRILSSMED 206
           +K++KRTEGVS+TD++GRIL    D
Sbjct: 117 FKEVKRTEGVSTTDLIGRILLDYRD 141

CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity. Length = 150

>gnl|CDD|173924 cd02173, ECT, CTP:phosphoethanolamine cytidylyltransferase (ECT)

 Score =  183 bits (468), Expect = 2e-57
 Identities = 65/104 (62%), Positives = 85/104 (81%)

Query: 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSL 314
             +VVY+DGAFDLFH GH+E L+KAR+LGD+L+VG++ DQ V+E++GS +PIM+LHER L
Sbjct: 1   GDKVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVL 60

Query: 315 SVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPL 358
           SVLACRYVDEV+IGAP+ +TK++I  F I +VVHG   ET   L
Sbjct: 61  SVLACRYVDEVVIGAPYVITKELIEHFKIDVVVHGKTEETPDSL 104

CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini. Length = 152

>gnl|CDD|223688 COG0615, TagD, Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]

 Score =  140 bits (356), Expect = 5e-41
 Identities = 59/144 (40%), Positives = 84/144 (58%), Gaps = 13/144 (9%)

Query: 66  VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKGPPVLSMEERLALVS 124
            RV+ DG FD++H GH   LRQAK LGDEL+V V  DE +I   K  P++  E+R  ++ 
Sbjct: 2   KRVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEEQRAEVLE 61

Query: 125 GLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQ 184
            L++VDEVI  AP+ I  + +     E+K D ++ GDD     +    Y L  K G + +
Sbjct: 62  SLRYVDEVILGAPWDIKFEDI----EEYKPDIVVLGDDQ-KFDEDDLKYEL-VKRGLFVE 115

Query: 185 IKRTEGV------SSTDIVGRILS 202
           +KRTEGV      S++DI+ RIL 
Sbjct: 116 VKRTEGVSTCELISTSDIIKRILE 139

Length = 140

>gnl|CDD|173921 cd02170, cytidylyltransferase, cytidylyltransferase

 Score =  133 bits (337), Expect = 3e-38
 Identities = 58/138 (42%), Positives = 79/138 (57%), Gaps = 7/138 (5%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           RVY  G FD++H GH   L +AK LGD L+VGV  DE +   K  P+L  E+R  +V  L
Sbjct: 3   RVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKRRPILPEEQRAEVVEAL 62

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI- 185
           K+VDEVI   P++  +        E K D I+ GDD     D  + Y   KK G+  ++ 
Sbjct: 63  KYVDEVILGHPWSYFKP-----LEELKPDVIVLGDDQKNGVDEEEVYEELKKRGKVIEVP 117

Query: 186 -KRTEGVSSTDIVGRILS 202
            K+TEG+SS+DI+ RIL 
Sbjct: 118 RKKTEGISSSDIIKRILE 135

The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates. Length = 136

>gnl|CDD|215229 PLN02413, PLN02413, choline-phosphate cytidylyltransferase

 Score =  130 bits (329), Expect = 2e-35
 Identities = 61/140 (43%), Positives = 89/140 (63%), Gaps = 8/140 (5%)

Query: 66  VRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           VRVY DG +DL H+GHA +L QAK L     L+VG  +DE     KG  V++ +ER   +
Sbjct: 28  VRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERYESL 87

Query: 124 SGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGT--DAYALAKKVGR 181
              KWVDEVI +AP+ IT++F+++    H+IDY+ H   P     G   D Y   KK+G+
Sbjct: 88  RHCKWVDEVIPDAPWVITQEFLDK----HRIDYVAHDALPYADASGAGKDVYEFVKKIGK 143

Query: 182 YKQIKRTEGVSSTDIVGRIL 201
           +K+ KRT+G+S++DI+ RI+
Sbjct: 144 FKETKRTDGISTSDIIMRIV 163

Length = 294

>gnl|CDD|173924 cd02173, ECT, CTP:phosphoethanolamine cytidylyltransferase (ECT)

 Score =  125 bits (315), Expect = 9e-35
 Identities = 54/138 (39%), Positives = 82/138 (59%), Gaps = 8/138 (5%)

Query: 68  VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGP--PVLSMEERLALVSG 125
           VY+DG FDL H GH   L +A+ LGD L+VGV  D+ +   KG   P++++ ER+  V  
Sbjct: 5   VYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLA 64

Query: 126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDP--CLLPDGTDAYALAKKVGRYK 183
            ++VDEV+  APY IT++ +       KID ++HG         DG D YA+ K++G +K
Sbjct: 65  CRYVDEVVIGAPYVITKELIEHF----KIDVVVHGKTEETPDSLDGEDPYAVPKEMGIFK 120

Query: 184 QIKRTEGVSSTDIVGRIL 201
           +I     +++ DIV RI+
Sbjct: 121 EIDSGSDLTTRDIVNRII 138

CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini. Length = 152

>gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase; Provisional

 Score =  116 bits (293), Expect = 1e-29
 Identities = 46/138 (33%), Positives = 81/138 (58%), Gaps = 8/138 (5%)

Query: 68  VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGP--PVLSMEERLALVSG 125
           VY+DG FDL H GH   L++A+ LGD L+VGV  D+ +   KG   P++++ ER+  V  
Sbjct: 195 VYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVLS 254

Query: 126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGD--DPCLLPDGTDAYALAKKVGRYK 183
            ++VDEV+  AP+ +T++ ++ L     I+ ++ G   D      G+D Y + K +G +K
Sbjct: 255 CRYVDEVVIGAPFDVTKEVIDSL----HINVVVGGKFSDLVNEEGGSDPYEVPKAMGIFK 310

Query: 184 QIKRTEGVSSTDIVGRIL 201
           ++     +++  IV R++
Sbjct: 311 EVDSGCDLTTDSIVDRVV 328

Length = 353

>gnl|CDD|173925 cd02174, CCT, CTP:phosphocholine cytidylyltransferase

 Score =  108 bits (272), Expect = 2e-28
 Identities = 39/93 (41%), Positives = 62/93 (66%), Gaps = 4/93 (4%)

Query: 259 VYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV 316
           VY+DG FDLFH GH   L++A++LG  D+L+VG+++D+ + +H+G   P+M   ER  +V
Sbjct: 5   VYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKG--PPVMTEEERYEAV 62

Query: 317 LACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
             C++VDEV+ GAP+  T + +  +    V HG
Sbjct: 63  RHCKWVDEVVEGAPYVTTPEFLDKYKCDYVAHG 95

CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity. Length = 150

>gnl|CDD|223688 COG0615, TagD, Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]

 Score = 97.7 bits (244), Expect = 1e-24
 Identities = 37/91 (40%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA 318
           V+ DG FD+ H GH+E L++A++LGD L+V +  D+ V + +    PIM   +R+  + +
Sbjct: 4   VWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKR-KPIMPEEQRAEVLES 62

Query: 319 CRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
            RYVDEVI+GAPW++  + I  +   +VV G
Sbjct: 63  LRYVDEVILGAPWDIKFEDIEEYKPDIVVLG 93

Length = 140

>gnl|CDD|173921 cd02170, cytidylyltransferase, cytidylyltransferase

 Score = 93.5 bits (233), Expect = 4e-23
 Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)

Query: 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL 317
            VY  G FD+ H GH+  L++A++LGD+L+VG+  D+ V++ +    PI+   +R+  V 
Sbjct: 3   RVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKRR--PILPEEQRAEVVE 60

Query: 318 ACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
           A +YVDEVI+G PW   K +       ++V G
Sbjct: 61  ALKYVDEVILGHPWSYFKPLEELKP-DVIVLG 91

The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates. Length = 136

>gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase; Provisional

 Score = 95.2 bits (237), Expect = 6e-22
 Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 2/96 (2%)

Query: 254 PNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERS 313
           P    V++DG FD+ H GH   L++AR LGD L VG ++D+ +  ++G   P+MH  ER 
Sbjct: 9   PGTIRVWVDGCFDMLHFGHANALRQARALGDELFVGCHSDEEIMRNKGP--PVMHQEERY 66

Query: 314 LSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
            ++ AC++VDEV+ G P+    + +       VVHG
Sbjct: 67  EALRACKWVDEVVEGYPYTTRLEDLERLECDFVVHG 102

Length = 353

>gnl|CDD|215227 PLN02406, PLN02406, ethanolamine-phosphate cytidylyltransferase

 Score = 92.4 bits (229), Expect = 1e-20
 Identities = 50/143 (34%), Positives = 87/143 (60%), Gaps = 9/143 (6%)

Query: 68  VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGP--PVLSMEERLALVSG 125
           VY+DG FDL H GH   LR A+ALGD L+VG+ +D+ + A++G   P++++ ER   V  
Sbjct: 254 VYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLA 313

Query: 126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHG---DDPCLLPDGTDAYALAKKVGRY 182
            ++VDEVI  AP+ +++  M   FN   I  ++HG   ++   L    D YA+ K +G +
Sbjct: 314 CRYVDEVIIGAPWEVSKD-MITTFN---ISLVVHGTVAENNDFLKGEDDPYAVPKSMGIF 369

Query: 183 KQIKRTEGVSSTDIVGRILSSME 205
           + ++    ++++ I+ RI+++ E
Sbjct: 370 QVLESPLDITTSTIIRRIVANHE 392

Length = 418

>gnl|CDD|131254 TIGR02199, rfaE_dom_II, rfaE bifunctional protein, domain II

 Score = 82.4 bits (204), Expect = 5e-19
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 27/153 (17%)

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGP--PVLSMEE 118
            + K++ V+ +GCFD++H GH + L+QA+ALGD LVVGV SD  +   KG   P+   E+
Sbjct: 8   ARGKKI-VFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEED 66

Query: 119 RLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK 178
           R  +++ L  VD V+              +F+E   + +I    P +L  G D Y +   
Sbjct: 67  RAEVLAALSSVDYVV--------------IFDEDTPEELIGELKPDILVKGGD-YKVETL 111

Query: 179 V---------GRYKQIKRTEGVSSTDIVGRILS 202
           V         G+   +   EG S+T I+ +IL 
Sbjct: 112 VGAELVESYGGQVVLLPFVEGRSTTAIIEKILK 144

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 144

>gnl|CDD|232837 TIGR00125, cyt_tran_rel, cytidyltransferase-like domain

 Score = 78.9 bits (195), Expect = 1e-18
 Identities = 33/66 (50%), Positives = 42/66 (63%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
            V   G FD  H GH + L +AK L DEL+VGV SD+ +   KG PV S+EERL ++  L
Sbjct: 1   IVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKGEPVFSLEERLEMLKAL 60

Query: 127 KWVDEV 132
           K+VDE 
Sbjct: 61  KYVDEN 66

Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Length = 66

>gnl|CDD|173922 cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase

 Score = 73.3 bits (180), Expect = 6e-16
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQI-VSEHRGSYHPIMHLHERSL 314
            +VV   G FDL H GH+ +L++A+ LGD L+V + TD+    + + +  P      R+ 
Sbjct: 1   MKVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFNAGKGKKAVIPYEQ---RAE 57

Query: 315 SVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
            + + RYVD VI    WE   + I  +N+ + V G
Sbjct: 58  ILESIRYVDLVIPETNWEQKIEDIKKYNVDVFVMG 92

Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase. Length = 129

>gnl|CDD|215229 PLN02413, PLN02413, choline-phosphate cytidylyltransferase

 Score = 76.9 bits (189), Expect = 7e-16
 Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 6/103 (5%)

Query: 250 KGPGPNARV--VYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHP 305
               P+ R   VY DG +DLFH GH   L++A++L    +LLVG   D++  +++G    
Sbjct: 19  PSSSPSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGK--T 76

Query: 306 IMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVH 348
           +M   ER  S+  C++VDEVI  APW +T++ +    I  V H
Sbjct: 77  VMTEDERYESLRHCKWVDEVIPDAPWVITQEFLDKHRIDYVAH 119

Length = 294

>gnl|CDD|232837 TIGR00125, cyt_tran_rel, cytidyltransferase-like domain

 Score = 70.8 bits (174), Expect = 9e-16
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL 317
           +V   G FD FH GH+++L++A++L D L+VG+ +DQ V+  +G   P+  L ER   + 
Sbjct: 1   IVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKG--EPVFSLEERLEMLK 58

Query: 318 ACRYVDEV 325
           A +YVDE 
Sbjct: 59  ALKYVDEN 66

Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Length = 66

>gnl|CDD|225425 COG2870, RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 50/144 (34%), Positives = 73/144 (50%), Gaps = 26/144 (18%)

Query: 68  VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGP--PVLSMEERLALVSG 125
           V+ +GCFD++H GH   L QA+ALGD L+VGV SD  +   KG   P+ S E+R A+++ 
Sbjct: 335 VFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAA 394

Query: 126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----- 180
           L+ VD V+              +F+E   + +I    P +L  G D Y + K VG     
Sbjct: 395 LESVDLVV--------------IFDEDTPEELIEAVKPDILVKGGD-YKIEKIVGADIVE 439

Query: 181 ----RYKQIKRTEGVSSTDIVGRI 200
                   I   EG S+T I+ +I
Sbjct: 440 AYGGEVLLIPFEEGKSTTKIIEKI 463

Length = 467

>gnl|CDD|130581 TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate cytidylyltransferase

 Score = 69.9 bits (171), Expect = 9e-15
 Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 4/92 (4%)

Query: 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQI-VSEHRGSYHPIMHLHERSLSVL 317
           V   G FDL H GH+ +L++A+QLGD+L+V + TD+  + + + +YH   H   R L + 
Sbjct: 1   VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQKKAYHSYEH---RKLILE 57

Query: 318 ACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
             RYVD VI    WE  K  I  FNI + V G
Sbjct: 58  TIRYVDLVIPEKSWEQKKQDIIDFNIDVFVMG 89

This model describes glycerol-3-phosphate cytidyltransferase, also called CDP-glycerol pyrophosphorylase. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 125

>gnl|CDD|130581 TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate cytidylyltransferase

 Score = 69.1 bits (169), Expect = 2e-14
 Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 8/125 (6%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE 131
           G FDL+H+GH N L +AK LGD L+V + +DE  +  +     S E R  ++  +++VD 
Sbjct: 5   GTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDL 64

Query: 132 VIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGV 191
           VI    +   +Q +     +  ID  + GDD     +G   +   +   +   + RTEGV
Sbjct: 65  VIPEKSWEQKKQDI----IDFNIDVFVMGDD----WEGKFDFLKDECPLKVVYLPRTEGV 116

Query: 192 SSTDI 196
           S+T I
Sbjct: 117 STTKI 121

This model describes glycerol-3-phosphate cytidyltransferase, also called CDP-glycerol pyrophosphorylase. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 125

>gnl|CDD|183085 PRK11316, PRK11316, bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional

 Score = 73.7 bits (182), Expect = 2e-14
 Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 67  RVYM-DGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGP--PVLSMEERLALV 123
           ++ M +GCFD++H GH + L  A+ LGD L+V V SD  +   KG   PV  +E+R+A++
Sbjct: 341 KIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVL 400

Query: 124 SGLKWVDEVIA 134
           + L+ VD V+ 
Sbjct: 401 AALEAVDWVVP 411

Length = 473

>gnl|CDD|173923 cd02172, RfaE_N, N-terminal domain of RfaE

 Score = 67.8 bits (166), Expect = 8e-14
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE 131
           G FDL+H GH   L+ A++LGD LVV + SD  +    G P+   + R  +++ L +VD 
Sbjct: 11  GVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAALGFVDY 70

Query: 132 V-IANAPYAITEQFMNRL---FNEHKIDYIIHGDD 162
           V + + P A   + ++ L         DY    +D
Sbjct: 71  VVLFDNPTA--LEIIDALQPNIYVKGGDYENPEND 103

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose . Length = 144

>gnl|CDD|131254 TIGR02199, rfaE_dom_II, rfaE bifunctional protein, domain II

 Score = 67.7 bits (166), Expect = 9e-14
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 4/73 (5%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERS--L 314
           ++V+ +G FD+ HAGHV  L++AR LGD L+VG+ +D  V   +G   PI    +R+  L
Sbjct: 12  KIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEEDRAEVL 71

Query: 315 SVLACRYVDEVII 327
           + L+   VD V+I
Sbjct: 72  AALSS--VDYVVI 82

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 144

>gnl|CDD|216517 pfam01467, CTP_transf_2, Cytidylyltransferase

 Score = 67.5 bits (165), Expect = 1e-13
 Identities = 40/150 (26%), Positives = 50/150 (33%), Gaps = 25/150 (16%)

Query: 71  DGCFDLMHYGHANALRQAKALGDEL-VVGVVSDEEIIANKGPPVLSMEERLALVSGLKWV 129
            G FD +H GH   L QAK L D   +VGV SDE         + S EERL ++     V
Sbjct: 3   GGTFDPIHLGHLRLLEQAKELFDLDKIVGVPSDES-PHKDTKNLFSAEERLEMLELALEV 61

Query: 130 DEVIANAP------YAITEQFMNRLFN----------EHKIDYIIHGDDPCLLPDGTDA- 172
           D  +          Y I                    E +I  +    D  L        
Sbjct: 62  DPNLEVDDFEDLDVYFIIGADALVNLRGWRGVTELLPEFQIVVVNRPLDYGLETVFLREE 121

Query: 173 ---YALAKKVGRYKQIKRTEGVSSTDIVGR 199
              Y L K V           +SST+I  R
Sbjct: 122 LDKYPLGKIVIPDLPYND---ISSTEIRER 148

This family includes: Cholinephosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase. Length = 148

>gnl|CDD|173922 cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase

 Score = 66.0 bits (161), Expect = 3e-13
 Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 12/133 (9%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           K V  Y  G FDL+H GH N L +AKALGD+L+V V +DE         V+  E+R  ++
Sbjct: 2   KVVITY--GTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFNAGKGKKAVIPYEQRAEIL 59

Query: 124 SGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYK 183
             +++VD VI   P    EQ +  +   + +D  + GD      D    +   K+     
Sbjct: 60  ESIRYVDLVI---PETNWEQKIEDIKK-YNVDVFVMGD------DWEGKFDFLKEYCEVV 109

Query: 184 QIKRTEGVSSTDI 196
            + RT+G+SST +
Sbjct: 110 YLPRTKGISSTQL 122

Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase. Length = 129

>gnl|CDD|173923 cd02172, RfaE_N, N-terminal domain of RfaE

 Score = 63.2 bits (154), Expect = 3e-12
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSL 314
              VV   G FDL H GHV  L+ AR LGD L+V + +D+ V+  +G   PI     R+ 
Sbjct: 3   GKTVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVN--KGPGRPIFPEDLRAE 60

Query: 315 SVLACRYVDEVII 327
            + A  +VD V++
Sbjct: 61  VLAALGFVDYVVL 73

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose . Length = 144

>gnl|CDD|225425 COG2870, RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 4/73 (5%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERS--L 314
           +VV+ +G FD+ HAGHV  L +AR LGD L+VG+ +D  V   +G   PI    +R+  L
Sbjct: 333 KVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVL 392

Query: 315 SVLACRYVDEVII 327
           + L    VD V+I
Sbjct: 393 AALES--VDLVVI 403

Length = 467

>gnl|CDD|234834 PRK00777, PRK00777, phosphopantetheine adenylyltransferase; Provisional

 Score = 57.9 bits (141), Expect = 3e-10
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE 131
           G FD +H GH   LR+A  LG  + +G+ SDE   + K   V   E RL  +   K++  
Sbjct: 8   GTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKKHKVRPYEVRLKNL--KKFLKA 65

Query: 132 VIANAPYAITE 142
           V  +  Y I +
Sbjct: 66  VEYDREYEIVK 76

Length = 153

>gnl|CDD|183085 PRK11316, PRK11316, bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional

 Score = 59.5 bits (145), Expect = 1e-09
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERS--L 314
           ++V  +G FD+ HAGHV  L  AR+LGD L+V + +D  V   +G   P+  L +R   L
Sbjct: 341 KIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVL 400

Query: 315 SVLACRYVDEVI 326
           + L    VD V+
Sbjct: 401 AALEA--VDWVV 410

Length = 473

>gnl|CDD|216517 pfam01467, CTP_transf_2, Cytidylyltransferase

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 24/128 (18%)

Query: 260 YIDGAFDLFHAGHVEILKKARQLGDFL-LVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA 318
              G FD  H GH+ +L++A++L D   +VG+ +D+  S H+ +   +    ER   +  
Sbjct: 1   LFGGTFDPIHLGHLRLLEQAKELFDLDKIVGVPSDE--SPHKDTK-NLFSAEERLEMLEL 57

Query: 319 CRYVDE-------------VIIGAP-------WEVTKDMITTFNICLVVHGTVSETNTPL 358
              VD               IIGA        W    +++  F I +V         T  
Sbjct: 58  ALEVDPNLEVDDFEDLDVYFIIGADALVNLRGWRGVTELLPEFQIVVVNRPLDYGLETVF 117

Query: 359 TVSLQFLY 366
                  Y
Sbjct: 118 LREELDKY 125

This family includes: Cholinephosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase. Length = 148

>gnl|CDD|234834 PRK00777, PRK00777, phosphopantetheine adenylyltransferase; Provisional

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA 318
           V + G FD  H GH  +L+KA +LG  + +G+ +D+    ++   H +     R  ++  
Sbjct: 4   VAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKK--HKVRPYEVRLKNLK- 60

Query: 319 CRYVDEVIIGAPWEVTK 335
            +++  V     +E+ K
Sbjct: 61  -KFLKAVEYDREYEIVK 76

Length = 153

>gnl|CDD|223950 COG1019, COG1019, Predicted nucleotidyltransferase [General function prediction only]

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 20/103 (19%)

Query: 62  KKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLA 121
           K K ++V + G FD +H GH   L  A  +GD + +G+ SDE     K   +   E RL 
Sbjct: 2   KIKFMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKKEKIEPYEVRLR 61

Query: 122 LVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPC 164
            +                    F+  +  ++  + I+  DDP 
Sbjct: 62  NLR------------------NFLESIKADY--EEIVPIDDPY 84

Length = 158

>gnl|CDD|234912 PRK01170, PRK01170, phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional

 Score = 44.0 bits (104), Expect = 7e-05
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEER 119
              + G F  +H GH   L++A   GDE+V+G+ SDE +  NK  P+   E+R
Sbjct: 2   ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVRKNKVYPI-PYEDR 53

Length = 322

>gnl|CDD|173912 cd02156, nt_trans, nucleotidyl transferase superfamily

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPP-----VLSMEERLALVSGL 126
           G    +H GHA  + +AK + D+ VV +  +  +   + P        S+EE +++  G 
Sbjct: 6   GEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVKVWQDPHELEERKESIEEDISVC-GE 64

Query: 127 KWVD 130
            +  
Sbjct: 65  DFQQ 68

nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain. Length = 105

>gnl|CDD|234912 PRK01170, PRK01170, phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPI 306
           +  + G F   H GH  +LKKA + GD +++G+ +D+ V   +   +PI
Sbjct: 2   ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYV--RKNKVYPI 48

Length = 322

>gnl|CDD|185679 cd02064, FAD_synthetase_N, FAD synthetase, N-terminal domain of the bifunctional enzyme

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 23/147 (15%)

Query: 72  GCFDLMHYGHANALRQAKALGDE--LVVGVVS-----DEEIIANKGPPVL-SMEERLALV 123
           G FD +H GH   ++  K +  E  L   V++      E  + +K PP L ++EE+L L+
Sbjct: 6   GNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELL 65

Query: 124 SGLKWVDEVIA----NAPYAIT-EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK 178
             L  VD ++         +++ E+F+  L  +    +++ G D       +    L K+
Sbjct: 66  ESLG-VDYLLVLPFDKEFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKE 124

Query: 179 VGRYKQIKRT---------EGVSSTDI 196
           +G+    + T         E VSST I
Sbjct: 125 LGKKYGFEVTVVPPVTLDGERVSSTRI 151

FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation. Length = 180

>gnl|CDD|223950 COG1019, COG1019, Predicted nucleotidyltransferase [General function prediction only]

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHER 312
             V + G FD  H GH ++L+ A ++GD + +G+ +D++  + +     I     R
Sbjct: 6   MKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKK--EKIEPYEVR 59

Length = 158

>gnl|CDD|173914 cd02163, PPAT, Phosphopantetheine adenylyltransferase

 Score = 39.8 bits (94), Expect = 6e-04
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 14/92 (15%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE 131
           G FD +  GH + + +A  L DE++V V  +     +K  P+ S+EER+ L      + E
Sbjct: 6   GSFDPITNGHLDIIERASKLFDEVIVAVAVN----PSK-KPLFSLEERVEL------IRE 54

Query: 132 VIANAPYAITEQFMNRLFN---EHKIDYIIHG 160
              + P    + F   L +   +H  + I+ G
Sbjct: 55  ATKHLPNVEVDGFDGLLVDFARKHGANVIVRG 86

Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli. Length = 153

>gnl|CDD|233444 TIGR01510, coaD_prev_kdtB, pantetheine-phosphate adenylyltransferase, bacterial

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 5/52 (9%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           G FD +  GH + +++A AL DE++V V  +     +K  P+ S+EER+ L+
Sbjct: 6   GSFDPVTNGHLDIIKRAAALFDEVIVAVAKNP----SKK-PLFSLEERVELI 52

This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 155

>gnl|CDD|223741 COG0669, CoaD, Phosphopantetheine adenylyltransferase [Coenzyme metabolism]

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 19/103 (18%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE 131
           G FD +  GH + +++A AL DE++V V     I  +K  P+ S+EER+ L+       E
Sbjct: 9   GSFDPITNGHLDIIKRASALFDEVIVAVA----INPSKK-PLFSLEERVELIR------E 57

Query: 132 VIANAPYAITEQFMNRLFN---EHKIDYIIHGDDPCLLPDGTD 171
              + P      F   L +   +     ++ G     L   +D
Sbjct: 58  ATKHLPNVEVVGFSGLLVDYAKKLGATVLVRG-----LRAVSD 95

Length = 159

>gnl|CDD|223274 COG0196, RibF, FAD synthase [Coenzyme metabolism]

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 24/147 (16%)

Query: 72  GCFDLMHYGHANALRQAKALGDE--LVVGVVS----DEEIIANKGPPVLSM--EERLALV 123
           G FD +H GH   L QA    ++  L V V++      E++    PP       E++ L+
Sbjct: 22  GNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLL 81

Query: 124 SGLKWVDEVIA---NAPYA-IT-EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK 178
           +G   VD ++    +  +A ++ E+F+  L  +  + +I+ G D            L ++
Sbjct: 82  AGYG-VDALVVLDFDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKGRQGNAELLRE 140

Query: 179 VGRYKQIKRTE---------GVSSTDI 196
           +G  K  + T           +SST I
Sbjct: 141 LG-QKGFEVTIVPKINEEGIRISSTAI 166

Length = 304

>gnl|CDD|234674 PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional

 Score = 37.8 bits (89), Expect = 0.003
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 5/52 (9%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           G FD +  GH + + +A  L DE++V V  +     +K  P+ S+EER+ L+
Sbjct: 8   GSFDPITNGHLDIIERASRLFDEVIVAVAIN----PSKK-PLFSLEERVELI 54

Length = 159

>gnl|CDD|184424 PRK13964, coaD, phosphopantetheine adenylyltransferase; Provisional

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 2/35 (5%)

Query: 263 GAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQI 295
           G+FD FH GH+ ILKKA +L D  +++V I  D+ 
Sbjct: 8   GSFDPFHKGHLNILKKALKLFDKVYVVVSINPDKS 42

Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	379
PLN02406	418	ethanolamine-phosphate cytidylyltransferase	100.0
KOG2803	358	consensus Choline phosphate cytidylyltransferase/P	100.0
PTZ00308	353	ethanolamine-phosphate cytidylyltransferase; Provi	100.0
cd02174	150	CCT CTP:phosphocholine cytidylyltransferase. CTP:p	99.97
PLN02413	294	choline-phosphate cytidylyltransferase	99.97
COG0615	140	TagD Cytidylyltransferase [Cell envelope biogenesi	99.97
KOG2804	348	consensus Phosphorylcholine transferase/cholinepho	99.96
PLN02406	418	ethanolamine-phosphate cytidylyltransferase	99.96
cd02173	152	ECT CTP:phosphoethanolamine cytidylyltransferase (	99.96
cd02172	144	RfaE_N N-terminal domain of RfaE. RfaE is a protei	99.95
cd02174	150	CCT CTP:phosphocholine cytidylyltransferase. CTP:p	99.95
cd02170	136	cytidylyltransferase cytidylyltransferase. The cyt	99.95
cd02173	152	ECT CTP:phosphoethanolamine cytidylyltransferase (	99.95
PTZ00308	353	ethanolamine-phosphate cytidylyltransferase; Provi	99.95
PLN02413	294	choline-phosphate cytidylyltransferase	99.94
COG0615	140	TagD Cytidylyltransferase [Cell envelope biogenesi	99.94
TIGR02199	144	rfaE_dom_II rfaE bifunctional protein, domain II.	99.94
TIGR01518	125	g3p_cytidyltrns glycerol-3-phosphate cytidylyltran	99.93
cd02171	129	G3P_Cytidylyltransferase glycerol-3-phosphate cyti	99.93
KOG2803	358	consensus Choline phosphate cytidylyltransferase/P	99.89
PRK07143	279	hypothetical protein; Provisional	99.88
cd02064	180	FAD_synthetase_N FAD synthetase, N-terminal domain	99.87
COG2870	467	RfaE ADP-heptose synthase, bifunctional sugar kina	99.87
PRK11316	473	bifunctional heptose 7-phosphate kinase/heptose 1-	99.86
PRK05627	305	bifunctional riboflavin kinase/FMN adenylyltransfe	99.86
KOG2804	348	consensus Phosphorylcholine transferase/cholinepho	99.84
TIGR02199	144	rfaE_dom_II rfaE bifunctional protein, domain II.	99.84
PF06574	157	FAD_syn: FAD synthetase; InterPro: IPR015864 Ribof	99.83
TIGR00083	288	ribF riboflavin kinase/FMN adenylyltransferase. mu	99.83
TIGR01518	125	g3p_cytidyltrns glycerol-3-phosphate cytidylyltran	99.82
PRK11316	473	bifunctional heptose 7-phosphate kinase/heptose 1-	99.8
cd02171	129	G3P_Cytidylyltransferase glycerol-3-phosphate cyti	99.79
COG2870	467	RfaE ADP-heptose synthase, bifunctional sugar kina	99.79
COG0196	304	RibF FAD synthase [Coenzyme metabolism]	99.78
cd02170	136	cytidylyltransferase cytidylyltransferase. The cyt	99.77
cd02172	144	RfaE_N N-terminal domain of RfaE. RfaE is a protei	99.77
cd02039	143	cytidylyltransferase_like Cytidylyltransferase-lik	99.75
COG0669	159	CoaD Phosphopantetheine adenylyltransferase [Coenz	99.75
PRK00777	153	phosphopantetheine adenylyltransferase; Provisiona	99.72
PRK13964	140	coaD phosphopantetheine adenylyltransferase; Provi	99.66
PRK00168	159	coaD phosphopantetheine adenylyltransferase; Provi	99.58
smart00764	182	Citrate_ly_lig Citrate lyase ligase C-terminal dom	99.58
cd02169	297	Citrate_lyase_ligase Citrate lyase ligase. Citrate	99.57
PRK00777	153	phosphopantetheine adenylyltransferase; Provisiona	99.56
PLN02388	177	phosphopantetheine adenylyltransferase	99.55
PRK00168	159	coaD phosphopantetheine adenylyltransferase; Provi	99.55
TIGR01527	165	arch_NMN_Atrans nicotinamide-nucleotide adenylyltr	99.54
PRK01170	322	phosphopantetheine adenylyltransferase/unknown dom	99.51
cd02163	153	PPAT Phosphopantetheine adenylyltransferase. Phosp	99.51
PRK01170	322	phosphopantetheine adenylyltransferase/unknown dom	99.5
PF01467	157	CTP_transf_2: Cytidylyltransferase; InterPro: IPR0	99.46
TIGR00125	66	cyt_tran_rel cytidyltransferase-related domain. Pr	99.46
cd02166	163	NMNAT_Archaea Nicotinamide/nicotinate mononucleoti	99.45
TIGR00125	66	cyt_tran_rel cytidyltransferase-related domain. Pr	99.44
TIGR01510	155	coaD_prev_kdtB pantetheine-phosphate adenylyltrans	99.42
cd02039	143	cytidylyltransferase_like Cytidylyltransferase-lik	99.4
cd02164	143	PPAT_CoAS phosphopantetheine adenylyltransferase d	99.39
PRK00071	203	nadD nicotinic acid mononucleotide adenylyltransfe	99.38
COG1057	197	NadD Nicotinic acid mononucleotide adenylyltransfe	99.36
cd02163	153	PPAT Phosphopantetheine adenylyltransferase. Phosp	99.35
PRK06973	243	nicotinic acid mononucleotide adenylyltransferase;	99.34
cd02165	192	NMNAT Nicotinamide/nicotinate mononucleotide adeny	99.34
TIGR01527	165	arch_NMN_Atrans nicotinamide-nucleotide adenylyltr	99.33
PF01467	157	CTP_transf_2: Cytidylyltransferase; InterPro: IPR0	99.32
PRK08887	174	nicotinic acid mononucleotide adenylyltransferase;	99.3
TIGR00482	193	nicotinate (nicotinamide) nucleotide adenylyltrans	99.25
cd02064	180	FAD_synthetase_N FAD synthetase, N-terminal domain	99.25
cd02168	181	NMNAT_Nudix Nicotinamide/nicotinate mononucleotide	99.24
PRK13964	140	coaD phosphopantetheine adenylyltransferase; Provi	99.24
TIGR01510	155	coaD_prev_kdtB pantetheine-phosphate adenylyltrans	99.22
COG1019	158	Predicted nucleotidyltransferase [General function	99.22
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.22
PRK01153	174	nicotinamide-nucleotide adenylyltransferase; Provi	99.22
PRK07152	342	nadD putative nicotinate-nucleotide adenylyltransf	99.2
cd02166	163	NMNAT_Archaea Nicotinamide/nicotinate mononucleoti	99.2
cd02156	105	nt_trans nucleotidyl transferase superfamily. nt_t	99.18
cd02167	158	NMNAT_NadR Nicotinamide/nicotinate mononucleotide	99.16
cd02164	143	PPAT_CoAS phosphopantetheine adenylyltransferase d	99.03
PRK13670	388	hypothetical protein; Provisional	99.02
PRK08099	399	bifunctional DNA-binding transcriptional repressor	99.02
COG0669	159	CoaD Phosphopantetheine adenylyltransferase [Coenz	99.0
PRK05627	305	bifunctional riboflavin kinase/FMN adenylyltransfe	98.99
COG1019	158	Predicted nucleotidyltransferase [General function	98.98
cd02167	158	NMNAT_NadR Nicotinamide/nicotinate mononucleotide	98.91
cd09286	225	NMNAT_Eukarya Nicotinamide/nicotinate mononucleoti	98.87
PLN02945	236	nicotinamide-nucleotide adenylyltransferase/nicoti	98.86
cd00560	277	PanC Pantoate-beta-alanine ligase. PanC Pantoate-b	98.82
TIGR00124	332	cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP	98.79
PRK00380	281	panC pantoate--beta-alanine ligase; Reviewed	98.77
cd02156	105	nt_trans nucleotidyl transferase superfamily. nt_t	98.75
PRK07143	279	hypothetical protein; Provisional	98.74
PRK13671	298	hypothetical protein; Provisional	98.71
PRK13793	196	nicotinamide-nucleotide adenylyltransferase; Provi	98.7
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	98.68
cd02168	181	NMNAT_Nudix Nicotinamide/nicotinate mononucleotide	98.67
PLN02388	177	phosphopantetheine adenylyltransferase	98.67
PRK00071	203	nadD nicotinic acid mononucleotide adenylyltransfe	98.64
cd02165	192	NMNAT Nicotinamide/nicotinate mononucleotide adeny	98.63
PRK01153	174	nicotinamide-nucleotide adenylyltransferase; Provi	98.62
PRK13671	298	hypothetical protein; Provisional	98.49
TIGR00124	332	cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP	98.48
PRK13793	196	nicotinamide-nucleotide adenylyltransferase; Provi	98.46
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	98.46
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	98.46
KOG3351	293	consensus Predicted nucleotidyltransferase [Genera	98.42
COG1056	172	NadR Nicotinamide mononucleotide adenylyltransfera	98.37
KOG3351	293	consensus Predicted nucleotidyltransferase [Genera	98.32
PRK08099	399	bifunctional DNA-binding transcriptional repressor	98.31
PRK08887	174	nicotinic acid mononucleotide adenylyltransferase;	98.3
TIGR00482	193	nicotinate (nicotinamide) nucleotide adenylyltrans	98.26
COG1056	172	NadR Nicotinamide mononucleotide adenylyltransfera	98.19
PRK07152	342	nadD putative nicotinate-nucleotide adenylyltransf	98.13
smart00764	182	Citrate_ly_lig Citrate lyase ligase C-terminal dom	98.12
PF06574	157	FAD_syn: FAD synthetase; InterPro: IPR015864 Ribof	98.12
cd02169	297	Citrate_lyase_ligase Citrate lyase ligase. Citrate	98.1
COG1057	197	NadD Nicotinic acid mononucleotide adenylyltransfe	98.03
PRK06973	243	nicotinic acid mononucleotide adenylyltransferase;	98.01
PF08218	182	Citrate_ly_lig: Citrate lyase ligase C-terminal do	97.99
TIGR00018	282	panC pantoate--beta-alanine ligase. This family is	97.93
PLN02660	284	pantoate--beta-alanine ligase	97.85
TIGR00083	288	ribF riboflavin kinase/FMN adenylyltransferase. mu	97.8
cd09286	225	NMNAT_Eukarya Nicotinamide/nicotinate mononucleoti	97.72
PLN02945	236	nicotinamide-nucleotide adenylyltransferase/nicoti	97.6
COG3053	352	CitC Citrate lyase synthetase [Energy production a	97.59
PRK13670	388	hypothetical protein; Provisional	97.59
PF05636	388	HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPr	97.41
COG0196	304	RibF FAD synthase [Coenzyme metabolism]	97.36
COG1323	358	Predicted nucleotidyltransferase [General function	97.33
TIGR00339	383	sopT ATP sulphurylase. Members of this family also	96.96
COG1323	358	Predicted nucleotidyltransferase [General function	96.65
PF08218	182	Citrate_ly_lig: Citrate lyase ligase C-terminal do	96.61
PF05636	388	HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPr	96.37
TIGR00018	282	panC pantoate--beta-alanine ligase. This family is	95.7
PRK00380	281	panC pantoate--beta-alanine ligase; Reviewed	95.54
PLN02660	284	pantoate--beta-alanine ligase	95.43
COG3053	352	CitC Citrate lyase synthetase [Energy production a	94.75
cd00560	277	PanC Pantoate-beta-alanine ligase. PanC Pantoate-b	94.52
PF02569	280	Pantoate_ligase: Pantoate-beta-alanine ligase; Int	94.45
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	94.0
COG0414	285	PanC Panthothenate synthetase [Coenzyme metabolism	93.94
PRK04149	391	sat sulfate adenylyltransferase; Reviewed	93.71
COG2046	397	MET3 ATP sulfurylase (sulfate adenylyltransferase)	92.99
cd00517	353	ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also	92.73
PF01747	215	ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002	92.41
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	92.02
KOG3199	234	consensus Nicotinamide mononucleotide adenylyl tra	91.95
PF02569	280	Pantoate_ligase: Pantoate-beta-alanine ligase; Int	91.42
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	91.07
TIGR00339	383	sopT ATP sulphurylase. Members of this family also	89.81
KOG3042	283	consensus Panthothenate synthetase [Coenzyme trans	89.11
COG0414	285	PanC Panthothenate synthetase [Coenzyme metabolism	88.75

>PLN02406 ethanolamine-phosphate cytidylyltransferase

Probab=100.00  E-value=1.3e-77  Score=600.98  Aligned_cols=361  Identities=70%  Similarity=1.058  Sum_probs=316.3

Q ss_pred             cccccccccccccchhhhhhhhhhcccccccccccccCcccchHHhhhcccCCCCCeEEEEecccCcCCHHHHHHHHHHH
Q 016998           10 WIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAK   89 (379)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~   89 (379)
                      +.|.++++++|++||+|+++|+||+++.+++.    ..|++|+..-..+++++.++.|||++||||++|.||+++|+||+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~rV~~~G~FDllH~GH~~~L~qAk   77 (418)
T PLN02406          2 SISSAKYVASCLIGGLMLGASVLGLSLAGFGS----SLPYAWPDLGIFKKKKKKKPVRVYMDGCFDMMHYGHANALRQAR   77 (418)
T ss_pred             CccccceeeehhhHHHHHHHHHHHHHhccccc----cccccchhhhhhccccCCCceEEEEcCeeCCCCHHHHHHHHHHH
Confidence            45678889999999999999999999998872    25777776222255566778899999999999999999999999


Q ss_pred             HcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccccHHHHHHHhhccCccEEEEcCCCCCCCCC
Q 016998           90 ALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDG  169 (379)
Q Consensus        90 ~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~efl~~ll~~~~~d~VV~GdD~~~g~~g  169 (379)
                      ++||+|+|||++|+++..+|++|+++++||++++++|+|||+|++++||.++.+|+++++++++||++|||+||+...++
T Consensus        78 ~lGd~LIVGV~SDe~i~~~Kg~PV~~~eER~~~v~alk~VD~Vv~~apy~~~~d~~~~li~~~~~D~vVhGdD~~~~~~g  157 (418)
T PLN02406         78 ALGDELVVGVVSDEEIIANKGPPVTPMHERMIMVSGVKWVDEVIPDAPYAITEEFMNKLFNEYNIDYIIHGDDPCLLPDG  157 (418)
T ss_pred             HhCCEEEEEEecChhhhccCCCCcCCHHHHHHHHHhcCCCceEEeCCccccchHHHHHHHHHhCCCEEEECCCccccCCc
Confidence            99999999999999998889999999999999999999999999999999999999888889999999999999998999


Q ss_pred             chHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhccccccccccccCCCCCCCchh-------hhccccccccccccccce
Q 016998          170 TDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLR-------AIQSKDAHLSQFLPTSRR  242 (379)
Q Consensus       170 ~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  242 (379)
                      .+.|+..+..|++++++|++++|||+|++||+.++++++....+...+++++|+.       .+.+..+.+++|++|+++
T Consensus       158 ~d~y~~~k~~Gr~~~i~rt~GvSTTdIv~Ril~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~  237 (418)
T PLN02406        158 TDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHSQFEDGGSGSGTRVSHFLPTSRR  237 (418)
T ss_pred             hHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHhhhccccccccchhhhhhhhccccccccccCCCCCCCcccccccHHH
Confidence            9999999999999999999999999999999999999875333322333333331       122344667899999999


Q ss_pred             eeccccCCCCCCCCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCc
Q 016998          243 IVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYV  322 (379)
Q Consensus       243 i~~~~~g~~~~~~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~V  322 (379)
                      |.||++|+.|.++.++||++|+||+||.||+++|++|+++||+|||||++|+.++++||.++|+|+++||+++|++||||
T Consensus       238 i~qf~~g~~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lGd~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ack~V  317 (418)
T PLN02406        238 IVQFSNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLACRYV  317 (418)
T ss_pred             HHHHhccCCCCCCCeEEEECCeeccCCHHHHHHHHHHHHhCCEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999889999999999999999999


Q ss_pred             CceEeCCCCCchHHHHHHcCCcEEEEcCCCCCCC----------CCCCCceEEEEeeeccee
Q 016998          323 DEVIIGAPWEVTKDMITTFNICLVVHGTVSETNT----------PLTVSLQFLYLPLINYCI  374 (379)
Q Consensus       323 d~Vii~~~~~~~~~~i~~~~~d~vv~G~d~~~~~----------~l~~~~evv~lp~~~~~~  374 (379)
                      |+|++++|+..+.+++++++||++|||++|+...          .......+..+|++.+++
T Consensus       318 D~VVi~ap~~~~~~~i~~~~~d~vvhG~~~~~~~~~~~~~D~Y~v~k~~G~~~~i~~~~~iS  379 (418)
T PLN02406        318 DEVIIGAPWEVSKDMITTFNISLVVHGTVAENNDFLKGEDDPYAVPKSMGIFQVLESPLDIT  379 (418)
T ss_pred             cEEEeCCCCCCCHHHHHHhCCCEEEECCcCCCccccCCCCcchHHHhcCceEEEeCCCCCCc
Confidence            9999999999999999999999999998875321          222356677777776554

>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]

Probab=100.00  E-value=8.8e-79  Score=577.15  Aligned_cols=285  Identities=56%  Similarity=0.939  Sum_probs=265.5

Q ss_pred             CCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccc
Q 016998           61 GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAI  140 (379)
Q Consensus        61 ~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~  140 (379)
                      ++.++.|||++||||++|+||.++|+|||++|++|+||||+|++|..+||+|+|+.|||++|+++|||||+||+++||.+
T Consensus         4 ~~~~~~rVw~DGCfDm~HyGHanaLrQAkalGdkLivGVHsDeeI~~nKGpPV~t~eERy~~v~~ikWVDEVV~~APyvt   83 (358)
T KOG2803|consen    4 KKNRPVRVWADGCFDMVHYGHANALRQAKALGDKLIVGVHSDEEITLNKGPPVFTDEERYEMVKAIKWVDEVVEGAPYVT   83 (358)
T ss_pred             cCCCceeEEeccchhhhhhhhhHHHHHHHHhCCeEEEEecchHHHHhcCCCCcccHHHHHHHHhhcchhhhhhcCCCeec
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhccccccccccccCCCCCC
Q 016998          141 TEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPR  220 (379)
Q Consensus       141 t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~~~~~~~~~~~~~~~~~~  220 (379)
                      +.++++    +|+||++|||+|.+..++|.|+|.+.|++|++++++||+|||||+|+.||+..++++. ++....+..+.
T Consensus        84 t~~~md----~y~cd~vvHGdDit~~a~G~D~Y~~vK~agrykevKRT~GVSTTelvgRmll~~~~~~-~~~~~~~~~e~  158 (358)
T KOG2803|consen   84 TLEWMD----KYGCDYVVHGDDITLDADGLDCYRLVKAAGRYKEVKRTEGVSTTELVGRMLLKKRNHH-SDEVSSSQREL  158 (358)
T ss_pred             cHHHHH----HhCCeEEEeCCcceecCCCccHHHHHHHhcchheeeeccCcchhhhhhHhhhhccCCC-ccccchhhhhh
Confidence            999985    7899999999999999999999999999999999999999999999999999998887 33322222222


Q ss_pred             Cch----hhhccccccccccccccceeeccccCCCCCCCCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcch
Q 016998          221 DPL----RAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV  296 (379)
Q Consensus       221 ~~~----~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v  296 (379)
                      .++    ....++++++++|+|++++|+||++|+.|.|++++||++|.|||||+||+++|++|+.+||+|||||++|+++
T Consensus       159 ~~~~g~~~~~~sp~t~~s~F~~tt~~i~~~~~G~~p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~lgdyLIvGI~~D~~v  238 (358)
T KOG2803|consen  159 SFSSGTDDDGLSPWTRVSVFLPTTQKIIQFSNGREPKPTDKVVYVDGAFDLFHAGHLDFLEKAKRLGDYLIVGIHTDQTV  238 (358)
T ss_pred             hhccccCCcccCCccceeeeeecCccceEeecCCCCCCCCcEEEEcCchhhhccchHHHHHHHHhccCceEEEeecCcch
Confidence            222    3345778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchHHHHHHcCCcEEEEcC
Q 016998          297 SEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGT  350 (379)
Q Consensus       297 ~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~~~i~~~~~d~vv~G~  350 (379)
                      |++||.++||||++||.++|++|||||+|++++|+..+.++++.++++.|++|.
T Consensus       239 neykgs~~PiMnl~ER~LsvlackyVdeVvvGaP~~v~s~~i~~~~~~~v~~g~  292 (358)
T KOG2803|consen  239 NEYKGSNYPIMNLHERVLSVLACKYVDEVVVGAPYEVTSEFIKLFNIDKVAHGT  292 (358)
T ss_pred             hhhccCCCccchHHHHHHHHhhhcccceEEEcCchhccHHHHHhcCceEEEEec
Confidence            999999999999999999999999999999999999999999999999999997

>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional

Probab=100.00  E-value=8.9e-67  Score=517.67  Aligned_cols=304  Identities=46%  Similarity=0.778  Sum_probs=270.4

Q ss_pred             CCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccc
Q 016998           61 GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAI  140 (379)
Q Consensus        61 ~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~  140 (379)
                      ++.++++||++||||++|.||+++|+||+++|+.|+||+++|+.+.+.|++|+++++||++++++|+|||+|+.++||..
T Consensus         7 ~~~~~~~v~~~G~FD~vH~GH~~~L~qAk~~g~~Livgv~~d~~i~~~K~~pi~~~eeR~~~l~~~~~VD~Vv~~~p~~~   86 (353)
T PTZ00308          7 KKPGTIRVWVDGCFDMLHFGHANALRQARALGDELFVGCHSDEEIMRNKGPPVMHQEERYEALRACKWVDEVVEGYPYTT   86 (353)
T ss_pred             CCCCcEEEEEEeecccCCHHHHHHHHHHHHhCCEEEEEeCCHHHHhhcCCCCCCCHHHHHHHHHhcCCccEEEECCCCCc
Confidence            44557899999999999999999999999999999999999999988888899999999999999999999999889987


Q ss_pred             cHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhccccccccccccCCCCCC
Q 016998          141 TEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPR  220 (379)
Q Consensus       141 t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~~~~~~~~~~~~~~~~~~  220 (379)
                      +.+|++    +++||+||||+||++|.+|.++|+.+++.|+++.++|++++|||+|++||+.++++++.... ....+  
T Consensus        87 ~~~fI~----~l~~d~vv~GdD~~~g~~g~~~~~~lk~~G~~~~v~rt~g~STt~ii~ril~~~~~~~~~~~-~~~~~--  159 (353)
T PTZ00308         87 RLEDLE----RLECDFVVHGDDISVDLNGRNSYQEIIDAGKFKVVKRTEGISTTDLVGRMLLCTKSHLLKSV-DEVQL--  159 (353)
T ss_pred             hHHHHH----HhCCCEEEECCCCCCCCCccchHHHHHhCCeEEEEecCCCCCHHHHHHHHHHhhhccccccc-ccccc--
Confidence            777774    68999999999999999999999999999999999999999999999999999988763211 11111  


Q ss_pred             CchhhhccccccccccccccceeeccccCCCCCCCCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccC
Q 016998          221 DPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHR  300 (379)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~K  300 (379)
                        + ...+.++..++|++++++|.||+.+..|.+++++||++|+||+||.||+++|++|+++||+|||||++|+++++.|
T Consensus       160 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kiv~~~G~FDl~H~GHi~~L~~A~~lgd~LIVgV~sD~~v~~~K  236 (353)
T PTZ00308        160 --E-SSLFPYTPTSHCLTTSRKIVQFSNNRSPKPGDRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHEDQVVNEQK  236 (353)
T ss_pred             --c-cccccCCCcceeecchhheeeccccCCCCCCCeEEEECCccCCCCHHHHHHHHHHHHhCCEEEEEEcchHHhHhhc
Confidence              1 1123445678899999999999999888888899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchHHHHHHcCCcEEEEcCCCCCC---------CCCCCCceEEEEeeec
Q 016998          301 GSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETN---------TPLTVSLQFLYLPLIN  371 (379)
Q Consensus       301 g~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~~~i~~~~~d~vv~G~d~~~~---------~~l~~~~evv~lp~~~  371 (379)
                      |.++|+|+++||++++++|+|||+|++++|+.++.+++++++||++|||.|+..+         .....+.++..+|++.
T Consensus       237 g~~~Pi~~~~eR~~~v~a~~~Vd~Vvi~~~~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~d~y~~~k~~G~~~~i~~~~  316 (353)
T PTZ00308        237 GSNYPIMNLNERVLGVLSCRYVDEVVIGAPFDVTKEVIDSLHINVVVGGKFSDLVNEEGGSDPYEVPKAMGIFKEVDSGC  316 (353)
T ss_pred             CCCCCCCCHHHHHHHHHhhCCCCeEEEcCCCCChHHHHHHhCCCEEEECCCCccccCCCcccchHHHhcCceEEEeCCCC
Confidence            9778999999999999999999999999999999999999999999999987531         1234567889999987


Q ss_pred             cee
Q 016998          372 YCI  374 (379)
Q Consensus       372 ~~~  374 (379)
                      ++|
T Consensus       317 ~~s  319 (353)
T PTZ00308        317 DLT  319 (353)
T ss_pred             Ccc
Confidence            765

>cd02174 CCT CTP:phosphocholine cytidylyltransferase

Probab=99.97  E-value=5.2e-31  Score=233.30  Aligned_cols=137  Identities=61%  Similarity=1.005  Sum_probs=127.6

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccccH
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITE  142 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~  142 (379)
                      ++|||+.|+||++|.||+++|++|+++|  |+|+|||++|+.+..+|++|+++++||.+++++|+|||+|+.+.|+..+.
T Consensus         2 ~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~~~   81 (150)
T cd02174           2 PVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRHCKWVDEVVEGAPYVTTP   81 (150)
T ss_pred             CeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCCCcCCHHHHHHHHHhcCCCCeEEECCCCCChH
Confidence            5689999999999999999999999999  99999999999988888889999999999999999999999998988777


Q ss_pred             HHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhccc
Q 016998          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSME  205 (379)
Q Consensus       143 efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~~~  205 (379)
                      +|++    +++||++++|+||..+..+.+.|+.+++.|+++.+++++++|||.|++||++...
T Consensus        82 ~~i~----~~~~d~vv~G~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Stt~ii~rI~~~~~  140 (150)
T cd02174          82 EFLD----KYKCDYVAHGDDIYLDADGEDCYQEVKDAGRFKEVKRTEGVSTTDLIGRILLDYR  140 (150)
T ss_pred             HHHH----HhCCCEEEECCCCCCCCCchhHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhHH
Confidence            8775    6799999999999988777788999999999999999999999999999997644

CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.

>PLN02413 choline-phosphate cytidylyltransferase

Probab=99.97  E-value=3.7e-30  Score=245.12  Aligned_cols=142  Identities=43%  Similarity=0.766  Sum_probs=128.5

Q ss_pred             cCCCCCeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCC
Q 016998           60 CGKKKRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAP  137 (379)
Q Consensus        60 ~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p  137 (379)
                      +...++++||++|+||++|.||+++|++|+++|  ++|+|||++|+.+...|++|+|+++||+++|++|+|||+|++++|
T Consensus        22 ~~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGrPIm~~~ER~e~V~acKyVDeVV~~aP  101 (294)
T PLN02413         22 SPSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERYESLRHCKWVDEVIPDAP  101 (294)
T ss_pred             CCCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCCCCCCHHHHHHHHHhcccccEEeeCCC
Confidence            355778899999999999999999999999996  799999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHhhccCccEEEEcCCCCCCC--CCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhccc
Q 016998          138 YAITEQFMNRLFNEHKIDYIIHGDDPCLLP--DGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSME  205 (379)
Q Consensus       138 ~~~t~efl~~ll~~~~~d~VV~GdD~~~g~--~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~~~  205 (379)
                      |..+++|++    +++||++|||++.....  .+.+.|+.+++.|++..++|++++|||+|++||++.+.
T Consensus       102 ~~~t~efI~----~~kpDiVvhGd~~~~d~~~~g~D~Y~~vK~~G~f~~i~Rt~gvSTTdII~RIlk~y~  167 (294)
T PLN02413        102 WVITQEFLD----KHRIDYVAHDALPYADASGAGKDVYEFVKKIGKFKETKRTDGISTSDIIMRIVKDYN  167 (294)
T ss_pred             ccccHHHHH----HhCCCEEEECCCCCccccccCchhHHHHHHCCeEEEecCCCCcCHHHHHHHHHHHHH
Confidence            999999986    67999999998654322  45678999999999999999999999999999997643

>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]

Probab=99.97  E-value=4.8e-30  Score=222.14  Aligned_cols=132  Identities=44%  Similarity=0.714  Sum_probs=117.5

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhc-cCCCCCCCHHHHHHHHhcCccccEEEeCCCccccHH
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIA-NKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQ  143 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~-~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~e  143 (379)
                      +++||+.||||++|+||+++|+||+++||+++|.+.+|+.+.. .|++|+++.+||++++++|+|||+|++++||+++.+
T Consensus         1 ~~rV~~~GtFDilH~GHi~~L~~Ak~lGd~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~~~   80 (140)
T COG0615           1 MKRVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEEQRAEVLESLRYVDEVILGAPWDIKFE   80 (140)
T ss_pred             CcEEEEeeEEEEechhHHHHHHHHHHhCCeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHHcCcchheeeeCCccccChH
Confidence            3579999999999999999999999999998888888888765 566999999999999999999999999999999888


Q ss_pred             HHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCC------CCHHHHHHHHHh
Q 016998          144 FMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEG------VSSTDIVGRILS  202 (379)
Q Consensus       144 fl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~------VSST~Ir~rI~~  202 (379)
                      +++    +++||+|++|+||+ +..+...|+..+ .|.+.+++|+++      +||++|.+++..
T Consensus        81 ~i~----~~k~Div~lG~D~~-~d~~~l~~~~~k-~G~~~~v~R~~g~~~~~~~st~~i~~~i~~  139 (140)
T COG0615          81 DIE----EYKPDIVVLGDDQK-FDEDDLKYELVK-RGLFVEVKRTEGVSTCELISTSDIIKRILE  139 (140)
T ss_pred             HHH----HhCCCEEEECCCCc-CChHHHHHHHHH-cCCeeEEEeccCcccCcccchHHHHHHHhc
Confidence            875    68999999999999 555566676666 999999999987      899999999863

>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]

Probab=99.96  E-value=5.9e-30  Score=242.79  Aligned_cols=154  Identities=41%  Similarity=0.639  Sum_probs=138.4

Q ss_pred             CCCCeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCcc
Q 016998           62 KKKRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYA  139 (379)
Q Consensus        62 ~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~  139 (379)
                      ..++.|||++|.||++|+||++.|+||++++  -+|+|||.+|+...+.||+.+|+.+||++.|++|+|||+|+.++||.
T Consensus        60 ~~RPVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lrHCryVDEVi~~APW~  139 (348)
T KOG2804|consen   60 TDRPVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNENERYEALRHCRYVDEVIPNAPWT  139 (348)
T ss_pred             CCCceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecChHHHHHHhhhhhhhhhhccCCCcc
Confidence            5789999999999999999999999999998  47999999999988999999999999999999999999999999999


Q ss_pred             ccHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhccccccccccccCCCCC
Q 016998          140 ITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLP  219 (379)
Q Consensus       140 ~t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~~~~~~~~~~~~~~~~~  219 (379)
                      ++.+|++    ++++|+|+|.+-+..+.+..|.|+.+|+.|++++.+||+||||++|+.||...+..      ..++.|+
T Consensus       140 lt~EFL~----~HKIDfVAHDdIPY~s~gsdDiY~~vK~~G~F~~T~RTeGvSTSDiI~rIVrDYD~------YvrRNL~  209 (348)
T KOG2804|consen  140 LTPEFLE----KHKIDFVAHDDIPYVSAGSDDIYKPVKEAGMFLPTQRTEGVSTSDIITRIVRDYDV------YVRRNLA  209 (348)
T ss_pred             ccHHHHH----hcccceeeccCccccCCCchhHHHHHHHhcccccccccCCccHHHHHHHHHHhHHH------HHHhhhc
Confidence            9999986    68999999999887766666779999999999999999999999999999866432      3455666


Q ss_pred             CCchhh
Q 016998          220 RDPLRA  225 (379)
Q Consensus       220 ~~~~~~  225 (379)
                      |.+++.
T Consensus       210 RGys~k  215 (348)
T KOG2804|consen  210 RGYSAK  215 (348)
T ss_pred             ccCCHH
Confidence            666543

>PLN02406 ethanolamine-phosphate cytidylyltransferase

Probab=99.96  E-value=9.6e-29  Score=248.63  Aligned_cols=146  Identities=33%  Similarity=0.627  Sum_probs=133.2

Q ss_pred             HhhhcccCCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCC--CCCCCHHHHHHHHhcCccccE
Q 016998           54 CFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDE  131 (379)
Q Consensus        54 ~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~~~~VD~  131 (379)
                      ||+....++...++||++|+||++|.||+++|++|+++||+|+|||++|+.+..+|+  +|+|+++||.+++++|+|||+
T Consensus       240 qf~~g~~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lGd~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ack~VD~  319 (418)
T PLN02406        240 QFSNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLACRYVDE  319 (418)
T ss_pred             HHhccCCCCCCCeEEEECCeeccCCHHHHHHHHHHHHhCCEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhccCcccE
Confidence            777776666778899999999999999999999999999999999999999988887  899999999999999999999


Q ss_pred             EEeCCCccccHHHHHHHhhccCccEEEEcCCCC---CCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 016998          132 VIANAPYAITEQFMNRLFNEHKIDYIIHGDDPC---LLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS  203 (379)
Q Consensus       132 Vv~~~p~~~t~efl~~ll~~~~~d~VV~GdD~~---~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~  203 (379)
                      |++++||..+++|++    +++||++|||+||.   +..++.|.|...++.|+++.+++++++|||+|++||+..
T Consensus       320 VVi~ap~~~~~~~i~----~~~~d~vvhG~~~~~~~~~~~~~D~Y~v~k~~G~~~~i~~~~~iSTt~II~RI~~~  390 (418)
T PLN02406        320 VIIGAPWEVSKDMIT----TFNISLVVHGTVAENNDFLKGEDDPYAVPKSMGIFQVLESPLDITTSTIIRRIVAN  390 (418)
T ss_pred             EEeCCCCCCCHHHHH----HhCCCEEEECCcCCCccccCCCCcchHHHhcCceEEEeCCCCCCcHHHHHHHHHHh
Confidence            999999999999886    67999999999874   233457889999999999999999999999999999964

>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT)

Probab=99.96  E-value=2e-28  Score=217.21  Aligned_cols=135  Identities=40%  Similarity=0.723  Sum_probs=123.2

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCC--CCCCCHHHHHHHHhcCccccEEEeCCCccccH
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDEVIANAPYAITE  142 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~  142 (379)
                      .++||+.|+||++|.||+++|++|+++||+|+|||++|+.+...|+  +|+++++||++++++|+|||+|+...|+.++.
T Consensus         2 ~~iv~~~G~FD~~H~GHi~~L~~A~~lgd~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~~~   81 (152)
T cd02173           2 DKVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVITK   81 (152)
T ss_pred             CeEEEEcCcccCCCHHHHHHHHHHHHcCCEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcchH
Confidence            4589999999999999999999999999999999999999887776  69999999999999999999999988887777


Q ss_pred             HHHHHHhhccCccEEEEcCCCCCC--CCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 016998          143 QFMNRLFNEHKIDYIIHGDDPCLL--PDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS  203 (379)
Q Consensus       143 efl~~ll~~~~~d~VV~GdD~~~g--~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~  203 (379)
                      +|++    +++||++++|.||...  ..+.+.|+.+++.|++..+++++++|||+|++||+..
T Consensus        82 ~~~~----~~~~d~vv~G~d~~~~~~~~~~~~~~~~~~~G~~~~v~~~~~~Sts~Ii~rI~~~  140 (152)
T cd02173          82 ELIE----HFKIDVVVHGKTEETPDSLDGEDPYAVPKEMGIFKEIDSGSDLTTRDIVNRIIKN  140 (152)
T ss_pred             HHHH----HhCCCEEEECCCCccccccCchHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHh
Confidence            7775    6899999999999764  3466789999999999999999999999999999865

CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.

>cd02172 RfaE_N N-terminal domain of RfaE

Probab=99.95  E-value=1.3e-27  Score=210.16  Aligned_cols=134  Identities=25%  Similarity=0.365  Sum_probs=117.4

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccccHHH
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~ef  144 (379)
                      .++|+++|+||++|.||+++|++|+++|+.++|++.+|+.+.+.+.+|+++.+||.+++++++|||.++.. |+...++|
T Consensus         4 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~vv~~~~d~~~~~~~~~~i~~~~eR~~~l~~lg~VD~vi~~-~~~~~~~f   82 (144)
T cd02172           4 KTVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAALGFVDYVVLF-DNPTALEI   82 (144)
T ss_pred             CEEEEEecccCCCCHHHHHHHHHHHHhCCeEEEEEeChHHhccCCCCCCCCHHHHHHHHHccCCccEEEEC-CCCCHHHH
Confidence            46799999999999999999999999999999999999877655558999999999999999999999983 55445677


Q ss_pred             HHHHhhccCccEEEEcCCCCCCCCC-----chHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 016998          145 MNRLFNEHKIDYIIHGDDPCLLPDG-----TDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS  203 (379)
Q Consensus       145 l~~ll~~~~~d~VV~GdD~~~g~~g-----~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~  203 (379)
                      ++    +++++++|+|+||+||.++     .++++.+++.|....+.+++++|||+|++||+..
T Consensus        83 i~----~l~~~~vv~G~d~~fg~~~~~~~~~g~~~~l~~~g~~~~~~~~~~~sts~li~~i~~~  142 (144)
T cd02172          83 ID----ALQPNIYVKGGDYENPENDVTGKIAPEAEAVKAYGGKIVFTGEIVFSSSALINRIFDE  142 (144)
T ss_pred             HH----HhCCCEEEECCCcccCccccccchhhhHHHHHHhCCEEEEecCCCcchHHHHHHHHhh
Confidence            75    5899999999999999876     7889999988776555599999999999999754

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .

>cd02174 CCT CTP:phosphocholine cytidylyltransferase

Probab=99.95  E-value=3.3e-28  Score=215.44  Aligned_cols=117  Identities=34%  Similarity=0.634  Sum_probs=106.6

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCc
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEV  333 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~  333 (379)
                      .+.||++|+||+||.||+++|++|+++|  |+|||||++|++++++||+  |+|+++||++++++|+|||+|++++|+.+
T Consensus         2 ~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~--pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~   79 (150)
T cd02174           2 PVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGP--PVMTEEERYEAVRHCKWVDEVVEGAPYVT   79 (150)
T ss_pred             CeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCC--CcCCHHHHHHHHHhcCCCCeEEECCCCCC
Confidence            3679999999999999999999999999  9999999999999999985  99999999999999999999999999999


Q ss_pred             hHHHHHHcCCcEEEEcCCCCCC-------CCCCCCceEEEEeeeccee
Q 016998          334 TKDMITTFNICLVVHGTVSETN-------TPLTVSLQFLYLPLINYCI  374 (379)
Q Consensus       334 ~~~~i~~~~~d~vv~G~d~~~~-------~~l~~~~evv~lp~~~~~~  374 (379)
                      +.+++++++||++++|+||...       +.+....+++++|++.++|
T Consensus        80 ~~~~i~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~S  127 (150)
T cd02174          80 TPEFLDKYKCDYVAHGDDIYLDADGEDCYQEVKDAGRFKEVKRTEGVS  127 (150)
T ss_pred             hHHHHHHhCCCEEEECCCCCCCCCchhHHHHHHhCCEEEEeCCCCCCC
Confidence            9999999999999999998642       1334578999999998764

CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.

>cd02170 cytidylyltransferase cytidylyltransferase

Probab=99.95  E-value=2.3e-27  Score=205.79  Aligned_cols=133  Identities=44%  Similarity=0.675  Sum_probs=119.1

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccccHHH
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~ef  144 (379)
                      +++++++|+||++|.||+++|++|+++++.++|++++|+.+.+.|++|+++.+||.+++++|+|||.++...|++    |
T Consensus         1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~~~~vd~v~~~~~~~----~   76 (136)
T cd02170           1 MKRVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKRRPILPEEQRAEVVEALKYVDEVILGHPWS----Y   76 (136)
T ss_pred             CeEEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECCcHHHHhcCCCCCCCHHHHHHHHHcCCCcCEEEECCCCC----H
Confidence            468999999999999999999999999999999999998776666679999999999999999999999877765    4


Q ss_pred             HHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEec--cCCCCCHHHHHHHHHh
Q 016998          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK--RTEGVSSTDIVGRILS  202 (379)
Q Consensus       145 l~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~--r~~~VSST~Ir~rI~~  202 (379)
                      ++.+ .++++|++|+|+||+||.++++.++.+++.|....+.  ++.++|||+||++|+.
T Consensus        77 ~~~l-~~~~~~~vv~G~d~~fg~~~~~~~~~l~~~g~~~~~~~~~~~~vSSt~Ir~~i~~  135 (136)
T cd02170          77 FKPL-EELKPDVIVLGDDQKNGVDEEEVYEELKKRGKVIEVPRKKTEGISSSDIIKRILE  135 (136)
T ss_pred             hHHH-HHHCCCEEEECCCCCCCCcchhHHHHHHHCCeEEEECCCCCCCCcHHHHHHHHHh
Confidence            4432 3578999999999999999999999999999988888  7889999999999963

The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.

>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT)

Probab=99.95  E-value=4.3e-28  Score=215.16  Aligned_cols=119  Identities=55%  Similarity=0.858  Sum_probs=107.4

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchH
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK  335 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~  335 (379)
                      +++||++|+||+||.||+++|++|+++||+|||||++|+++++.||+++|+|+++||++++++|+|||+|++++|+.++.
T Consensus         2 ~~iv~~~G~FD~~H~GHi~~L~~A~~lgd~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~~~   81 (152)
T cd02173           2 DKVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVITK   81 (152)
T ss_pred             CeEEEEcCcccCCCHHHHHHHHHHHHcCCEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcchH
Confidence            68999999999999999999999999999999999999999999987679999999999999999999999999999999


Q ss_pred             HHHHHcCCcEEEEcCCCCCCC---------CCCCCceEEEEeeeccee
Q 016998          336 DMITTFNICLVVHGTVSETNT---------PLTVSLQFLYLPLINYCI  374 (379)
Q Consensus       336 ~~i~~~~~d~vv~G~d~~~~~---------~l~~~~evv~lp~~~~~~  374 (379)
                      +++++++||++++|.+|..+.         .+.....+..+|++.++|
T Consensus        82 ~~~~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~~~G~~~~v~~~~~~S  129 (152)
T cd02173          82 ELIEHFKIDVVVHGKTEETPDSLDGEDPYAVPKEMGIFKEIDSGSDLT  129 (152)
T ss_pred             HHHHHhCCCEEEECCCCccccccCchHHHHHHHhCCeEEEecCCCCCC
Confidence            999999999999999986531         233467788888877665

CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.

>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional

Probab=99.95  E-value=2.5e-27  Score=235.78  Aligned_cols=146  Identities=32%  Similarity=0.612  Sum_probs=131.1

Q ss_pred             HhhhcccCCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCC--CCCCCHHHHHHHHhcCccccE
Q 016998           54 CFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDE  131 (379)
Q Consensus        54 ~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~~~~VD~  131 (379)
                      +|+.+..++.+.++||+.|+||++|.||+++|++|+++||+|+|||++|+.+...|+  .|+++++||.+++++|+|||.
T Consensus       181 ~~~~~~~~~~~~kiv~~~G~FDl~H~GHi~~L~~A~~lgd~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v~a~~~Vd~  260 (353)
T PTZ00308        181 QFSNNRSPKPGDRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVLSCRYVDE  260 (353)
T ss_pred             eccccCCCCCCCeEEEECCccCCCCHHHHHHHHHHHHhCCEEEEEEcchHHhHhhcCCCCCCCCHHHHHHHHHhhCCCCe
Confidence            566555444556899999999999999999999999999999999999999988887  699999999999999999999


Q ss_pred             EEeCCCccccHHHHHHHhhccCccEEEEcCCCCC--CCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 016998          132 VIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCL--LPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS  203 (379)
Q Consensus       132 Vv~~~p~~~t~efl~~ll~~~~~d~VV~GdD~~~--g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~  203 (379)
                      |++.+|+..+.+|++    +++||++|+|+|+..  ..++.+.|+..+..|++..+++++++|||+|++||+..
T Consensus       261 Vvi~~~~~~~~~~i~----~~~~d~vv~G~d~~~~~~~~~~d~y~~~k~~G~~~~i~~~~~~sTt~ii~RI~~~  330 (353)
T PTZ00308        261 VVIGAPFDVTKEVID----SLHINVVVGGKFSDLVNEEGGSDPYEVPKAMGIFKEVDSGCDLTTDSIVDRVVKN  330 (353)
T ss_pred             EEEcCCCCChHHHHH----HhCCCEEEECCCCccccCCCcccchHHHhcCceEEEeCCCCCccHHHHHHHHHHh
Confidence            999889888888875    679999999999975  55567889999999999999999999999999999854

>PLN02413 choline-phosphate cytidylyltransferase

Probab=99.94  E-value=8.3e-27  Score=222.22  Aligned_cols=121  Identities=31%  Similarity=0.527  Sum_probs=105.4

Q ss_pred             CCCCCeEEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCC
Q 016998          252 PGPNARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGA  329 (379)
Q Consensus       252 ~~~~~~~v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~  329 (379)
                      +.....+||++|+||+||.||+++|++||++|  |+|||||++|+++++.||+  |+|+++||+++|++|||||+|++++
T Consensus        23 ~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGr--PIm~~~ER~e~V~acKyVDeVV~~a  100 (294)
T PLN02413         23 PSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGK--TVMTEDERYESLRHCKWVDEVIPDA  100 (294)
T ss_pred             CCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCC--CCCCHHHHHHHHHhcccccEEeeCC
Confidence            34456789999999999999999999999996  7999999999999999994  9999999999999999999999999


Q ss_pred             CCCchHHHHHHcCCcEEEEcCCCCCC---------CCCCCCceEEEEeeeccee
Q 016998          330 PWEVTKDMITTFNICLVVHGTVSETN---------TPLTVSLQFLYLPLINYCI  374 (379)
Q Consensus       330 ~~~~~~~~i~~~~~d~vv~G~d~~~~---------~~l~~~~evv~lp~~~~~~  374 (379)
                      ||.++.+++++++||++|+|++...+         ..+...+.+..+|++.++|
T Consensus       101 P~~~t~efI~~~kpDiVvhGd~~~~d~~~~g~D~Y~~vK~~G~f~~i~Rt~gvS  154 (294)
T PLN02413        101 PWVITQEFLDKHRIDYVAHDALPYADASGAGKDVYEFVKKIGKFKETKRTDGIS  154 (294)
T ss_pred             CccccHHHHHHhCCCEEEECCCCCccccccCchhHHHHHHCCeEEEecCCCCcC
Confidence            99999999999999999999632211         1233457888999987664

>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]

Probab=99.94  E-value=6.1e-27  Score=202.80  Aligned_cols=97  Identities=38%  Similarity=0.700  Sum_probs=91.3

Q ss_pred             EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchHHH
Q 016998          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDM  337 (379)
Q Consensus       258 ~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~~~  337 (379)
                      .|+++|+||+||+||+++|++||++||+|+|.+..|+++...|++ .|+|+.+||++++++|||||+|++++||..+.++
T Consensus         3 rV~~~GtFDilH~GHi~~L~~Ak~lGd~liVv~a~de~~~~~~k~-~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~~~~   81 (140)
T COG0615           3 RVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKR-KPIMPEEQRAEVLESLRYVDEVILGAPWDIKFED   81 (140)
T ss_pred             EEEEeeEEEEechhHHHHHHHHHHhCCeEEEEEeccHHHHHhcCC-CCCCCHHHHHHHHHcCcchheeeeCCccccChHH
Confidence            499999999999999999999999999999999999998875554 7999999999999999999999999999998999


Q ss_pred             HHHcCCcEEEEcCCCCCC
Q 016998          338 ITTFNICLVVHGTVSETN  355 (379)
Q Consensus       338 i~~~~~d~vv~G~d~~~~  355 (379)
                      +++++||++++|+||..+
T Consensus        82 i~~~k~Div~lG~D~~~d   99 (140)
T COG0615          82 IEEYKPDIVVLGDDQKFD   99 (140)
T ss_pred             HHHhCCCEEEECCCCcCC
Confidence            999999999999999865

>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II

Probab=99.94  E-value=6.8e-26  Score=199.30  Aligned_cols=130  Identities=35%  Similarity=0.528  Sum_probs=109.4

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCC--CCCCCHHHHHHHHhcCccccEEEeCCCccccH
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDEVIANAPYAITE  142 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~  142 (379)
                      .++|+++|+||++|.||+++|++|+++|+.++|++++|+.....++  +|+++.+||.+++++|+|||+++...+. ..+
T Consensus        11 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~~-~~~   89 (144)
T TIGR02199        11 KKIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDED-TPE   89 (144)
T ss_pred             CCEEEEeCcccccCHHHHHHHHHHHHhCCccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCCC-CHH
Confidence            4589999999999999999999999999999999999998654444  6899999999999999999999983322 235


Q ss_pred             HHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhC-CeEEEeccCCCCCHHHHHHHHH
Q 016998          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKV-GRYKQIKRTEGVSSTDIVGRIL  201 (379)
Q Consensus       143 efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~-g~~~~v~r~~~VSST~Ir~rI~  201 (379)
                      +|++    +++++++|+|+||++...  ..++.+++. |++..+++++++|||+||+||+
T Consensus        90 ~fi~----~l~~~~vv~G~d~~~~~~--~~~~~~~~~g~~v~~~~~~~~iSSs~Ir~ri~  143 (144)
T TIGR02199        90 ELIG----ELKPDILVKGGDYKVETL--VGAELVESYGGQVVLLPFVEGRSTTAIIEKIL  143 (144)
T ss_pred             HHHH----HhCCCEEEECCCCCCCcc--hhHHHHHHcCCEEEEEeCCCCcCHHHHHHHHh
Confidence            7765    689999999999988432  235556655 6999999999999999999996

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.

>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase

Probab=99.93  E-value=2.4e-25  Score=190.94  Aligned_cols=123  Identities=35%  Similarity=0.508  Sum_probs=102.6

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccccHHHHHH
Q 016998           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNR  147 (379)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~efl~~  147 (379)
                      |++.|+||++|.||+++|++|+++|+.++||+++|+.....+.+|+++.+||++++++|+|||.++...|+   ++|++.
T Consensus         1 v~~~G~FDg~H~GH~~~l~~a~~~~~~~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~~~Vd~vi~~~~~---~~f~~~   77 (125)
T TIGR01518         1 VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDLVIPEKSW---EQKKQD   77 (125)
T ss_pred             CEEcceeCCCCHHHHHHHHHHHHcCCEEEEEEechHHHhhcCCCCCCCHHHHHHHHHcCCCccEEecCCCc---cchHHH
Confidence            57999999999999999999999999999999999866544458999999999999999999999775544   345544


Q ss_pred             HhhccCccEEEEcCCCCCCCCCchHHHHHHhC--CeEEEeccCCCCCHHHHHHHH
Q 016998          148 LFNEHKIDYIIHGDDPCLLPDGTDAYALAKKV--GRYKQIKRTEGVSSTDIVGRI  200 (379)
Q Consensus       148 ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~--g~~~~v~r~~~VSST~Ir~rI  200 (379)
                      + +++++|++++|+||.      ++++.+++.  .++..+++++++|||.||+.|
T Consensus        78 l-~~~~~~~vv~G~D~~------g~~~~l~~~~~~~v~~v~~~~~vSST~Ir~~~  125 (125)
T TIGR01518        78 I-IDFNIDVFVMGDDWE------GKFDFLKDECPLKVVYLPRTEGVSTTKIKKEI  125 (125)
T ss_pred             H-HHcCCCEEEECCCcc------chHHHHhhccCcEEEEeCCCCCccHHHHHhhC
Confidence            3 579999999999992      455666644  467788899999999999864

Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.

>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase

Probab=99.93  E-value=6.7e-25  Score=188.72  Aligned_cols=128  Identities=32%  Similarity=0.496  Sum_probs=108.0

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccccHHH
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~ef  144 (379)
                      |++|+++|+||++|.||+.+|++|+++++++++++++|+.....+.++++|.+||++++++++|||+++...++   ++|
T Consensus         1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~l~v~v~~d~~~~~~~~~~~~~~~~R~~~l~~~~~vd~v~~~~~~---~~f   77 (129)
T cd02171           1 MKVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFNAGKGKKAVIPYEQRAEILESIRYVDLVIPETNW---EQK   77 (129)
T ss_pred             CcEEEEeeeeccCCHHHHHHHHHHHHhCCEEEEEEeccHhHHhcCCCCCCCHHHHHHHHHcCCccCEEecCCCc---cCh
Confidence            46899999999999999999999999999999999888743222336899999999999999999999753333   345


Q ss_pred             HHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHh
Q 016998          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILS  202 (379)
Q Consensus       145 l~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~  202 (379)
                      ++.+ ++++++++++|+||      .++++.+++.|++..++++.++|||.||++|..
T Consensus        78 ~~~~-~~l~~~~vv~G~d~------~g~~~~l~~~~~v~~~~~~~~iSSt~Ir~~i~~  128 (129)
T cd02171          78 IEDI-KKYNVDVFVMGDDW------EGKFDFLKEYCEVVYLPRTKGISSTQLKEMLKK  128 (129)
T ss_pred             HHHH-HHhCCCEEEECCCC------cchHHHHHhCcEEEEeCCCCCcChHHHHHHHhh
Confidence            5543 67899999999999      356788999999999999999999999999863

Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.

>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]

Probab=99.89  E-value=1.4e-23  Score=200.47  Aligned_cols=93  Identities=38%  Similarity=0.657  Sum_probs=90.7

Q ss_pred             eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchHH
Q 016998          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKD  336 (379)
Q Consensus       257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~~  336 (379)
                      ..|+++|+||.+|.||.+.|++||++||+|||||++|+.+..+||+  |+|+.+||.+++.+||||||||.++|+-.+.+
T Consensus         9 ~rVw~DGCfDm~HyGHanaLrQAkalGdkLivGVHsDeeI~~nKGp--PV~t~eERy~~v~~ikWVDEVV~~APyvtt~~   86 (358)
T KOG2803|consen    9 VRVWADGCFDMVHYGHANALRQAKALGDKLIVGVHSDEEITLNKGP--PVFTDEERYEMVKAIKWVDEVVEGAPYVTTLE   86 (358)
T ss_pred             eeEEeccchhhhhhhhhHHHHHHHHhCCeEEEEecchHHHHhcCCC--CcccHHHHHHHHhhcchhhhhhcCCCeeccHH
Confidence            3599999999999999999999999999999999999999999995  99999999999999999999999999999999


Q ss_pred             HHHHcCCcEEEEcCC
Q 016998          337 MITTFNICLVVHGTV  351 (379)
Q Consensus       337 ~i~~~~~d~vv~G~d  351 (379)
                      +++++++|++|||+|
T Consensus        87 ~md~y~cd~vvHGdD  101 (358)
T KOG2803|consen   87 WMDKYGCDYVVHGDD  101 (358)
T ss_pred             HHHHhCCeEEEeCCc
Confidence            999999999999987

>PRK07143 hypothetical protein; Provisional

Probab=99.88  E-value=1e-21  Score=189.98  Aligned_cols=137  Identities=16%  Similarity=0.271  Sum_probs=111.1

Q ss_pred             CCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccC-CCCCCCHHHHHHHHhcCccccEEEeCCCcc--c
Q 016998           64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANK-GPPVLSMEERLALVSGLKWVDEVIANAPYA--I  140 (379)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K-~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~--~  140 (379)
                      +.+.|+++|+|||+|.||+++|++|++.++.++|...++|.....+ .+++++.+||.++++++ ++|.++. .||+  +
T Consensus        14 ~~~~vvaiG~FDGvH~GHq~Ll~~a~~~~~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~-Gvd~~~~-~~F~~~~   91 (279)
T PRK07143         14 FEKPTFVLGGFESFHLGHLELFKKAKESNDEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLANL-GFKNIIL-LDFNEEL   91 (279)
T ss_pred             CCCeEEEEccCCcCCHHHHHHHHHHHHCCCcEEEEEeCChHHhcccCcccCCCHHHHHHHHHHC-CCCEEEE-eCCCHHH
Confidence            3457999999999999999999999999887777666665543222 25699999999999998 7888876 3442  1


Q ss_pred             ----cHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCC-eEEEecc----CCCCCHHHHHHHHHhc
Q 016998          141 ----TEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKR----TEGVSSTDIVGRILSS  203 (379)
Q Consensus       141 ----t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-~~~~v~r----~~~VSST~Ir~rI~~~  203 (379)
                          .++|++.++. ++++.||+|+||+||.++.|+++.|++.+ .+..++.    ...||||.||+.|.++
T Consensus        92 a~ls~e~Fi~~ll~-l~~~~iVvG~Df~FG~~r~G~~~~L~~~~~~v~~v~~~~~~g~~ISST~IR~~l~~G  162 (279)
T PRK07143         92 QNLSGNDFIEKLTK-NQVSFFVVGKDFRFGKNASWNADDLKEYFPNVHIVEILKINQQKISTSLLKEFIEFG  162 (279)
T ss_pred             hCCCHHHHHHHHHh-cCCCEEEECCCcccCCCCCCCHHHHHHhCCcEEEeCCEEcCCcEEcHHHHHHHHHcC
Confidence                2589988764 89999999999999999999999999988 5655543    3469999999999866

>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme

Probab=99.87  E-value=6.7e-22  Score=179.87  Aligned_cols=134  Identities=25%  Similarity=0.379  Sum_probs=105.5

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCC-----eEEEEEccchhhh--ccCC-CCCCCHHHHHHHHhcCccccEEEeCCCcc
Q 016998           68 VYMDGCFDLMHYGHANALRQAKALGD-----ELVVGVVSDEEII--ANKG-PPVLSMEERLALVSGLKWVDEVIANAPYA  139 (379)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d-----~LiVgV~sd~~i~--~~K~-~pi~t~eER~~~l~~~~~VD~Vv~~~p~~  139 (379)
                      |+++|+|||+|.||+++|++|+++|+     .+++++.+++...  ..+. .++++.++|++++++++ ||+++. .|++
T Consensus         2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~-vd~v~~-~~f~   79 (180)
T cd02064           2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLG-VDYLLV-LPFD   79 (180)
T ss_pred             EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcC-CCEEEE-eCCC
Confidence            78999999999999999999999975     3555555555432  2222 68999999999999995 999997 3442


Q ss_pred             -----cc-HHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCC-----eEEEecc----CCCCCHHHHHHHHHhc
Q 016998          140 -----IT-EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-----RYKQIKR----TEGVSSTDIVGRILSS  203 (379)
Q Consensus       140 -----~t-~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-----~~~~v~r----~~~VSST~Ir~rI~~~  203 (379)
                           .+ ++|+++++.+.+++++|+|+||+||.++.++.+.+++.+     ++..+++    +..||||.||+.|.++
T Consensus        80 ~~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~FG~~~~g~~~~L~~~~~~~g~~v~~v~~~~~~~~~iSST~IR~~i~~G  158 (180)
T cd02064          80 KEFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTLDGERVSSTRIREALAEG  158 (180)
T ss_pred             HHHHcCCHHHHHHHHHhhcCCeEEEEccCCCCCCCCCCCHHHHHHhhhhcCcEEEEeCcEecCCcEEcHHHHHHHHHhC
Confidence                 12 478888776669999999999999999999888776543     3556665    3579999999999865

FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.

>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.87  E-value=5.2e-22  Score=196.00  Aligned_cols=119  Identities=29%  Similarity=0.442  Sum_probs=111.1

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchH
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK  335 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~  335 (379)
                      .++|++.|+||++|.||+.+|++||++||.||||++||.++++.||..+|+.+++.|+..+.++..||.|++++ ++.+.
T Consensus       332 ~~vvfTNGcFDIlH~GHvsyL~~Ar~lgd~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~F~-edTP~  410 (467)
T COG2870         332 KKVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVIFD-EDTPE  410 (467)
T ss_pred             CeEEEecchhhhccccHHHHHHHHHhhCCeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEEec-CCCHH
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999997 46679


Q ss_pred             HHHHHcCCcEEEEcCCCCCCC------CCCCCceEEEEeeecceee
Q 016998          336 DMITTFNICLVVHGTVSETNT------PLTVSLQFLYLPLINYCIC  375 (379)
Q Consensus       336 ~~i~~~~~d~vv~G~d~~~~~------~l~~~~evv~lp~~~~~~~  375 (379)
                      ++|+.++||++|+|.||..++      -...|.++..+||-++||-
T Consensus       411 ~LI~~~~PdilVKGgDy~~~~i~g~~~v~~~GG~v~~i~f~~g~ST  456 (467)
T COG2870         411 ELIEAVKPDILVKGGDYKIEKIVGADIVEAYGGEVLLIPFEEGKST  456 (467)
T ss_pred             HHHHHhCcceEEccCCCChhhccchhhhhhcCCeEEEEecccCCcH
Confidence            999999999999999999873      3446899999999999973

>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional

Probab=99.86  E-value=3e-21  Score=198.95  Aligned_cols=133  Identities=30%  Similarity=0.454  Sum_probs=113.7

Q ss_pred             CCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCC--CCCCCHHHHHHHHhcCccccEEEeCCCcccc
Q 016998           64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDEVIANAPYAIT  141 (379)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t  141 (379)
                      ..++|++.|+||++|.||+++|++|+++|++++||+++|+.+...|+  +|+++.+||.+++++|++||+|++.. ....
T Consensus       339 ~~~iv~~~G~fD~~H~GH~~~l~~a~~~~~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~~-~~~~  417 (473)
T PRK11316        339 GEKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPFE-EDTP  417 (473)
T ss_pred             CCeEEEEecccccCCHHHHHHHHHHHHhCCeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeCC-CCCH
Confidence            35789999999999999999999999999999999999998876675  68999999999999999999998632 2233


Q ss_pred             HHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHh
Q 016998          142 EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILS  202 (379)
Q Consensus       142 ~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~  202 (379)
                      ++|+    ++++||++++|+||.+... .+.+...+.+|+++.+++++++|||+|++||++
T Consensus       418 ~~~~----~~~~~d~vv~G~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~st~~i~~ri~~  473 (473)
T PRK11316        418 QRLI----AEILPDLLVKGGDYKPEEI-AGSKEVWANGGEVKVLNFEDGCSTTNIIKKIRQ  473 (473)
T ss_pred             HHHH----HHhCCCEEEECCCCCCCcc-ccHHHHHHcCCEEEEEcCCCCcCHHHHHHHHhC
Confidence            4555    4678999999999987643 345666778899999999999999999999963

>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed

Probab=99.86  E-value=3.6e-21  Score=188.57  Aligned_cols=135  Identities=24%  Similarity=0.371  Sum_probs=107.2

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCe-----EEEEEccchhhh--ccCC-CCCCCHHHHHHHHhcCccccEEEeCCCc
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALGDE-----LVVGVVSDEEII--ANKG-PPVLSMEERLALVSGLKWVDEVIANAPY  138 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~-----LiVgV~sd~~i~--~~K~-~pi~t~eER~~~l~~~~~VD~Vv~~~p~  138 (379)
                      .|+++|+|||+|.||+++|++|+++|+.     +++.+.+++...  +.+. +++++.+||.+++++++ ||.++. .||
T Consensus        15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~g-VD~~~~-~~F   92 (305)
T PRK05627         15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAELG-VDYVLV-LPF   92 (305)
T ss_pred             EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHcC-CCEEEE-ecC
Confidence            7999999999999999999999999864     255554444321  1222 67999999999999995 999987 455


Q ss_pred             c-----c-cHHHHHHHh-hccCccEEEEcCCCCCCCCCchHHHHHHhCC-----eEEEecc----CCCCCHHHHHHHHHh
Q 016998          139 A-----I-TEQFMNRLF-NEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-----RYKQIKR----TEGVSSTDIVGRILS  202 (379)
Q Consensus       139 ~-----~-t~efl~~ll-~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-----~~~~v~r----~~~VSST~Ir~rI~~  202 (379)
                      +     . .++|+++++ ++++++++|+|+||+||.++.++++.+++.+     ++..++.    .+.||||.||+.|.+
T Consensus        93 ~~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISST~IR~~I~~  172 (305)
T PRK05627         93 DEEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEVKEDGERVSSTAIRQALAE  172 (305)
T ss_pred             CHHHhcCCHHHHHHHHHHhccCCCEEEECCCCCCCCCCCCCHHHHHHHHHHcCcEEEEeccEecCCCcCchHHHHHHHHc
Confidence            3     1 248998844 5699999999999999999999999988863     3444443    367999999999986


Q ss_pred             c
Q 016998          203 S  203 (379)
Q Consensus       203 ~  203 (379)
                      +
T Consensus       173 G  173 (305)
T PRK05627        173 G  173 (305)
T ss_pred             C
Confidence            6

>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]

Probab=99.84  E-value=2.1e-21  Score=184.76  Aligned_cols=93  Identities=39%  Similarity=0.754  Sum_probs=88.7

Q ss_pred             eEEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCch
Q 016998          257 RVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVT  334 (379)
Q Consensus       257 ~~v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~  334 (379)
                      -.||.+|.|||||.||.+.|++||+++  -||||||.+|+...+.||  +.+|+..||++.|..|||||+|+.++||.++
T Consensus        64 VRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG--~TVm~e~ERyE~lrHCryVDEVi~~APW~lt  141 (348)
T KOG2804|consen   64 VRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKG--RTVMNENERYEALRHCRYVDEVIPNAPWTLT  141 (348)
T ss_pred             eEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccC--ceecChHHHHHHhhhhhhhhhhccCCCcccc
Confidence            469999999999999999999999987  599999999999999999  5999999999999999999999999999999


Q ss_pred             HHHHHHcCCcEEEEcCC
Q 016998          335 KDMITTFNICLVVHGTV  351 (379)
Q Consensus       335 ~~~i~~~~~d~vv~G~d  351 (379)
                      .+||++|+||+|+|.+.
T Consensus       142 ~EFL~~HKIDfVAHDdI  158 (348)
T KOG2804|consen  142 PEFLEKHKIDFVAHDDI  158 (348)
T ss_pred             HHHHHhcccceeeccCc
Confidence            99999999999999754

>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II

Probab=99.84  E-value=2.2e-20  Score=164.25  Aligned_cols=118  Identities=31%  Similarity=0.464  Sum_probs=103.3

Q ss_pred             CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCch
Q 016998          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVT  334 (379)
Q Consensus       255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~  334 (379)
                      ++++|++.|.||.+|.||+.+|++|+++++.++|||+.|+...+.|+...|+++++||.+++++|++||.|+++++. ..
T Consensus        10 ~~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~~-~~   88 (144)
T TIGR02199        10 GKKIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDED-TP   88 (144)
T ss_pred             CCCEEEEeCcccccCHHHHHHHHHHHHhCCccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCCC-CH
Confidence            46889999999999999999999999999999999999998876666546899999999999999999999998654 46


Q ss_pred             HHHHHHcCCcEEEEcCCCCCCCC------CCCCceEEEEeeecce
Q 016998          335 KDMITTFNICLVVHGTVSETNTP------LTVSLQFLYLPLINYC  373 (379)
Q Consensus       335 ~~~i~~~~~d~vv~G~d~~~~~~------l~~~~evv~lp~~~~~  373 (379)
                      .+|++.++++.+|.|.||..+..      -..|++++++|++...
T Consensus        89 ~~fi~~l~~~~vv~G~d~~~~~~~~~~~~~~~g~~v~~~~~~~~i  133 (144)
T TIGR02199        89 EELIGELKPDILVKGGDYKVETLVGAELVESYGGQVVLLPFVEGR  133 (144)
T ss_pred             HHHHHHhCCCEEEECCCCCCCcchhHHHHHHcCCEEEEEeCCCCc
Confidence            99999999999999999876532      1257899999998753

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.

>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2

Probab=99.83  E-value=7.7e-21  Score=169.60  Aligned_cols=131  Identities=26%  Similarity=0.430  Sum_probs=93.9

Q ss_pred             CCCeEEEEecccCcCCHHHHHHHHHHHHcCC-----eEEEEEccchhhhcc--CC-CCCCCHHHHHHHHhcCccccEEEe
Q 016998           63 KKRVRVYMDGCFDLMHYGHANALRQAKALGD-----ELVVGVVSDEEIIAN--KG-PPVLSMEERLALVSGLKWVDEVIA  134 (379)
Q Consensus        63 ~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d-----~LiVgV~sd~~i~~~--K~-~pi~t~eER~~~l~~~~~VD~Vv~  134 (379)
                      ...+.++++|+|||+|+||++||++|.+.+.     .+++.+.++|.....  +. ..+++.+||.++++.+ +||+++.
T Consensus         3 ~~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~-Gvd~~~~   81 (157)
T PF06574_consen    3 NNKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESL-GVDYVIV   81 (157)
T ss_dssp             T-S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT-TESEEEE
T ss_pred             CCCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHc-CCCEEEE
Confidence            3456899999999999999999999999972     367777777653332  22 5699999999999997 8998876


Q ss_pred             CCCcc--cc----HHHHHHHhh-ccCccEEEEcCCCCCCCCCchHHHHHHhCCe-----EEEecc----CCCCCHHH
Q 016998          135 NAPYA--IT----EQFMNRLFN-EHKIDYIIHGDDPCLLPDGTDAYALAKKVGR-----YKQIKR----TEGVSSTD  195 (379)
Q Consensus       135 ~~p~~--~t----~efl~~ll~-~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~-----~~~v~r----~~~VSST~  195 (379)
                       .||+  +.    ++|++.++. ++++..||+|+||+||.++.++.+.|++.++     +..++.    ...||||+
T Consensus        82 -~~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISStr  157 (157)
T PF06574_consen   82 -IPFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGKNRSGDVELLKELGKEYGFEVEVVPPVKIDGEKISSTR  157 (157)
T ss_dssp             -E-CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESGGGEEEHHHHHHCTTTT-SEEEEE---EETTEE-SHHH
T ss_pred             -ecchHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCCCCCCCHHHHHHhcccCceEEEEECCEEcCCcEeCCCC
Confidence             3332  21    499998775 8999999999999999999999999999884     344443    24699985

7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.

>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase

Probab=99.83  E-value=4.2e-20  Score=179.64  Aligned_cols=134  Identities=19%  Similarity=0.290  Sum_probs=106.4

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcC-----CeEEEEEccchhhhcc--CCCCCCCHHHHHHHHhcCccccEEEeCCCcc-
Q 016998           68 VYMDGCFDLMHYGHANALRQAKALG-----DELVVGVVSDEEIIAN--KGPPVLSMEERLALVSGLKWVDEVIANAPYA-  139 (379)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~-----d~LiVgV~sd~~i~~~--K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~-  139 (379)
                      ++++|+|||+|.||+++|++|++.|     ...++++.++|.....  +.+++++.+||.++++++ +||.++. .||+ 
T Consensus         1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~-Gvd~~~~-~~F~~   78 (288)
T TIGR00083         1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIK-GVEQLLV-VVFDE   78 (288)
T ss_pred             CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHc-CCCEEEE-eCCCH
Confidence            5899999999999999999999876     3467777777653222  224499999999999998 8999887 4442 


Q ss_pred             ----cc-HHHHHHHh-hccCccEEEEcCCCCCCCCCchHHHHHHhCCeE-----EEecc---CCCCCHHHHHHHHHhc
Q 016998          140 ----IT-EQFMNRLF-NEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRY-----KQIKR---TEGVSSTDIVGRILSS  203 (379)
Q Consensus       140 ----~t-~efl~~ll-~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~-----~~v~r---~~~VSST~Ir~rI~~~  203 (379)
                          .+ ++|+++++ ++++++.||+|+||+||.++.++.+.|++.++.     ..++.   .+.||||.||+.|.++
T Consensus        79 ~~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~~~~~~~~~~ISST~IR~~l~~G  156 (288)
T TIGR00083        79 EFANLSALQFIDQLIVKHLHVKFLVVGDDFRFGHDRQGDFLLLQLFGNTTIFCVIVKQLFCQDIRISSSAIRQALKNG  156 (288)
T ss_pred             HHHcCCHHHHHHHHHHhccCCcEEEECCCccCCCCCCCCHHHHHHhccccCcEEEEeccccCCCeECHHHHHHHHHcC
Confidence                11 38998876 459999999999999999999999999998752     22222   3579999999999976

multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).

>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase

Probab=99.82  E-value=5.7e-20  Score=157.61  Aligned_cols=111  Identities=37%  Similarity=0.587  Sum_probs=95.5

Q ss_pred             EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchHHHH
Q 016998          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMI  338 (379)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~~~i  338 (379)
                      |++.|+||++|.||+++|++|+++|++++|||++|+....++.  .|+++++||.+.+++|+|||.|+++.++....+.+
T Consensus         1 v~~~G~FDg~H~GH~~~l~~a~~~~~~~iv~v~~d~~~~~~~~--~~i~~~eeR~~~l~~~~~Vd~vi~~~~~~~f~~~l   78 (125)
T TIGR01518         1 VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQK--KAYHSYEHRKLILETIRYVDLVIPEKSWEQKKQDI   78 (125)
T ss_pred             CEEcceeCCCCHHHHHHHHHHHHcCCEEEEEEechHHHhhcCC--CCCCCHHHHHHHHHcCCCccEEecCCCccchHHHH
Confidence            5788999999999999999999999999999999987654433  69999999999999999999998888878777888


Q ss_pred             HHcCCcEEEEcCCCCCC-CCCC--CCceEEEEeeec
Q 016998          339 TTFNICLVVHGTVSETN-TPLT--VSLQFLYLPLIN  371 (379)
Q Consensus       339 ~~~~~d~vv~G~d~~~~-~~l~--~~~evv~lp~~~  371 (379)
                      +.++||++++|+||..+ +.+.  .+.+++++|+..
T Consensus        79 ~~~~~~~vv~G~D~~g~~~~l~~~~~~~v~~v~~~~  114 (125)
T TIGR01518        79 IDFNIDVFVMGDDWEGKFDFLKDECPLKVVYLPRTE  114 (125)
T ss_pred             HHcCCCEEEECCCccchHHHHhhccCcEEEEeCCCC
Confidence            99999999999999654 2221  368899999754

Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.

>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional

Probab=99.80  E-value=2.4e-19  Score=184.91  Aligned_cols=120  Identities=28%  Similarity=0.381  Sum_probs=107.1

Q ss_pred             CCCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCc
Q 016998          254 PNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEV  333 (379)
Q Consensus       254 ~~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~  333 (379)
                      .++++|++.|+||++|.||+++|++|+++||+|+|||++|+.+++.||.++|+++++||.+.+++|++||+|+..+ +..
T Consensus       338 ~~~~iv~~~G~fD~~H~GH~~~l~~a~~~~~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~~-~~~  416 (473)
T PRK11316        338 RGEKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPFE-EDT  416 (473)
T ss_pred             cCCeEEEEecccccCCHHHHHHHHHHHHhCCeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeCC-CCC
Confidence            3469999999999999999999999999999999999999999888987789999999999999999999998876 457


Q ss_pred             hHHHHHHcCCcEEEEcCCCCCCC------CCCCCceEEEEeeeccee
Q 016998          334 TKDMITTFNICLVVHGTVSETNT------PLTVSLQFLYLPLINYCI  374 (379)
Q Consensus       334 ~~~~i~~~~~d~vv~G~d~~~~~------~l~~~~evv~lp~~~~~~  374 (379)
                      ..+++++++||++++|+||..+.      ..+.+++++++||+.++|
T Consensus       417 ~~~~~~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  463 (473)
T PRK11316        417 PQRLIAEILPDLLVKGGDYKPEEIAGSKEVWANGGEVKVLNFEDGCS  463 (473)
T ss_pred             HHHHHHHhCCCEEEECCCCCCCccccHHHHHHcCCEEEEEcCCCCcC
Confidence            88999999999999999986542      233579999999987764

>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase

Probab=99.79  E-value=4.2e-19  Score=152.66  Aligned_cols=114  Identities=32%  Similarity=0.533  Sum_probs=96.8

Q ss_pred             eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchHH
Q 016998          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKD  336 (379)
Q Consensus       257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~~  336 (379)
                      ++|++.|+||++|.||..+|++|+++++.++|+|++|+.. ..+++ .|++|++||++++++|++||+|+...++....+
T Consensus         2 ~~v~~~G~FDgvH~GH~~ll~~a~~~~~~l~v~v~~d~~~-~~~~~-~~~~~~~~R~~~l~~~~~vd~v~~~~~~~~f~~   79 (129)
T cd02171           2 KVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFN-AGKGK-KAVIPYEQRAEILESIRYVDLVIPETNWEQKIE   79 (129)
T ss_pred             cEEEEeeeeccCCHHHHHHHHHHHHhCCEEEEEEeccHhH-HhcCC-CCCCCHHHHHHHHHcCCccCEEecCCCccChHH
Confidence            5799999999999999999999999999999999999743 33443 699999999999999999999987666666677


Q ss_pred             HHHHcCCcEEEEcCCCCCC-CCCCCCceEEEEeeecc
Q 016998          337 MITTFNICLVVHGTVSETN-TPLTVSLQFLYLPLINY  372 (379)
Q Consensus       337 ~i~~~~~d~vv~G~d~~~~-~~l~~~~evv~lp~~~~  372 (379)
                      .++.++++++++|.||..+ +.+...++++++|+...
T Consensus        80 ~~~~l~~~~vv~G~d~~g~~~~l~~~~~v~~~~~~~~  116 (129)
T cd02171          80 DIKKYNVDVFVMGDDWEGKFDFLKEYCEVVYLPRTKG  116 (129)
T ss_pred             HHHHhCCCEEEECCCCcchHHHHHhCcEEEEeCCCCC
Confidence            7799999999999999755 44555578999997544

Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.

>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.79  E-value=3.4e-19  Score=176.15  Aligned_cols=131  Identities=36%  Similarity=0.504  Sum_probs=115.2

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCC--CCCCCHHHHHHHHhcCccccEEEeCCCccccHH
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDEVIANAPYAITEQ  143 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~e  143 (379)
                      +.|+|-||||.+|.||..+|.||+++||.|+||++||.++.+.||  +|+.+++.|+.++.++..||.|+.     |++|
T Consensus       333 ~vvfTNGcFDIlH~GHvsyL~~Ar~lgd~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~-----F~ed  407 (467)
T COG2870         333 KVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVI-----FDED  407 (467)
T ss_pred             eEEEecchhhhccccHHHHHHHHHhhCCeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEE-----ecCC
Confidence            389999999999999999999999999999999999999988888  899999999999999999999998     5566


Q ss_pred             HHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHh
Q 016998          144 FMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILS  202 (379)
Q Consensus       144 fl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~  202 (379)
                      .-.++++.++||.+|.|-||+... =.+.-.....+|++..++..++.|||.|+++|.+
T Consensus       408 TP~~LI~~~~PdilVKGgDy~~~~-i~g~~~v~~~GG~v~~i~f~~g~STt~ii~ki~~  465 (467)
T COG2870         408 TPEELIEAVKPDILVKGGDYKIEK-IVGADIVEAYGGEVLLIPFEEGKSTTKIIEKIRA  465 (467)
T ss_pred             CHHHHHHHhCcceEEccCCCChhh-ccchhhhhhcCCeEEEEecccCCcHHHHHHHHhc
Confidence            666778889999999999996531 1233345567889999999999999999999975

>COG0196 RibF FAD synthase [Coenzyme metabolism]

Probab=99.78  E-value=1.2e-18  Score=169.87  Aligned_cols=137  Identities=22%  Similarity=0.321  Sum_probs=108.4

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCC-----eEEEEEccchhhhccCC---CCCCCHHHHHHHHhcCccccEEEeCC
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGD-----ELVVGVVSDEEIIANKG---PPVLSMEERLALVSGLKWVDEVIANA  136 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d-----~LiVgV~sd~~i~~~K~---~pi~t~eER~~~l~~~~~VD~Vv~~~  136 (379)
                      ...|+++|+|||+|+||+++|++|++.++     .+++.+.+.|.....+.   ..+++.++|.+.++.+ +||.++. .
T Consensus        15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~-gvd~~~v-~   92 (304)
T COG0196          15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGY-GVDALVV-L   92 (304)
T ss_pred             CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhc-CCcEEEE-E
Confidence            34699999999999999999999998763     35666665555322221   3499999999999998 7998886 3


Q ss_pred             Ccc--cc----HHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCe----EEEeccC--C--CCCHHHHHHHHHh
Q 016998          137 PYA--IT----EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR----YKQIKRT--E--GVSSTDIVGRILS  202 (379)
Q Consensus       137 p~~--~t----~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~----~~~v~r~--~--~VSST~Ir~rI~~  202 (379)
                      +|+  +.    ++|++.++++++++++|+|+||+||.++.++.+.++..|+    +.+++..  +  .||||.||+.+..
T Consensus        93 ~F~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~FGk~~~g~~~~L~~~~~~gf~v~~v~~~~~~~~~iSSt~IR~~L~~  172 (304)
T COG0196          93 DFDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKGRQGNAELLRELGQKGFEVTIVPKINEEGIRISSTAIRQALRE  172 (304)
T ss_pred             eCCHhHhhCCHHHHHHHHHhccCCcEEEEecccccCCCCCCCHHHHHHhccCCceEEEeccEecCCcEEchHHHHHHHhc
Confidence            343  22    4899877789999999999999999999999999999885    4444442  2  5999999999986


Q ss_pred             c
Q 016998          203 S  203 (379)
Q Consensus       203 ~  203 (379)
                      +
T Consensus       173 g  173 (304)
T COG0196         173 G  173 (304)
T ss_pred             C
Confidence            5

>cd02170 cytidylyltransferase cytidylyltransferase

Probab=99.77  E-value=1.8e-18  Score=150.03  Aligned_cols=95  Identities=37%  Similarity=0.719  Sum_probs=86.4

Q ss_pred             eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchHH
Q 016998          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKD  336 (379)
Q Consensus       257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~~  336 (379)
                      ++|++.|+||++|.||+.+|++|++.+|+++|+++.|+.+++.|+  .|+++.+||.+++++|++||.|++.+|+.... 
T Consensus         2 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~l~v~v~~~~~~~~~~~--~~~~~~~eR~~~l~~~~~vd~v~~~~~~~~~~-   78 (136)
T cd02170           2 KRVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKR--RPILPEEQRAEVVEALKYVDEVILGHPWSYFK-   78 (136)
T ss_pred             eEEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECCcHHHHhcCC--CCCCCHHHHHHHHHcCCCcCEEEECCCCCHhH-
Confidence            689999999999999999999999999999999999988776664  49999999999999999999999999888665 


Q ss_pred             HHHHcCCcEEEEcCCCCC
Q 016998          337 MITTFNICLVVHGTVSET  354 (379)
Q Consensus       337 ~i~~~~~d~vv~G~d~~~  354 (379)
                      .+.+++||+++.|+||..
T Consensus        79 ~l~~~~~~~vv~G~d~~f   96 (136)
T cd02170          79 PLEELKPDVIVLGDDQKN   96 (136)
T ss_pred             HHHHHCCCEEEECCCCCC
Confidence            467899999999999854

The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.

>cd02172 RfaE_N N-terminal domain of RfaE

Probab=99.77  E-value=2.4e-18  Score=151.46  Aligned_cols=97  Identities=33%  Similarity=0.496  Sum_probs=88.4

Q ss_pred             CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCch
Q 016998          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVT  334 (379)
Q Consensus       255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~  334 (379)
                      ++++|++.|+||.+|.||..+|++|+++++.++|++++|+.++..|+  +|++|++||++.+++|+|||.|++.+ ...+
T Consensus         3 ~~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~vv~~~~d~~~~~~~~--~~i~~~~eR~~~l~~lg~VD~vi~~~-~~~~   79 (144)
T cd02172           3 GKTVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGPG--RPIFPEDLRAEVLAALGFVDYVVLFD-NPTA   79 (144)
T ss_pred             CCEEEEEecccCCCCHHHHHHHHHHHHhCCeEEEEEeChHHhccCCC--CCCCCHHHHHHHHHccCCccEEEECC-CCCH
Confidence            46789999999999999999999999999999999999988776553  69999999999999999999999874 5678


Q ss_pred             HHHHHHcCCcEEEEcCCCCC
Q 016998          335 KDMITTFNICLVVHGTVSET  354 (379)
Q Consensus       335 ~~~i~~~~~d~vv~G~d~~~  354 (379)
                      ++|+++++++++|+|.||..
T Consensus        80 ~~fi~~l~~~~vv~G~d~~f   99 (144)
T cd02172          80 LEIIDALQPNIYVKGGDYEN   99 (144)
T ss_pred             HHHHHHhCCCEEEECCCccc
Confidence            99999999999999999865

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .

>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain

Probab=99.75  E-value=6.1e-18  Score=145.56  Aligned_cols=131  Identities=19%  Similarity=0.259  Sum_probs=98.7

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCcc-ccEEEe-CCCcc---c
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW-VDEVIA-NAPYA---I  140 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~-VD~Vv~-~~p~~---~  140 (379)
                      +++++|+||++|.||+.++++|++.+ +.++|++.+++.... +.+++++.++|+++++.+.. ++.++. ..+..   .
T Consensus         1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~R~~~l~~~~~~~~~v~~~~~~~~~~~~   79 (143)
T cd02039           1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKK-RNKDPFSLHERVEMLKEILKDRLKVVPVDFPEVKILL   79 (143)
T ss_pred             CeEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhc-ccccCCCHHHHHHHHHHhccCCcEEEEEecChhhccC
Confidence            37899999999999999999999999 999999988765432 13579999999999999863 566654 22211   1


Q ss_pred             cHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhC---CeEEEeccC---CCCCHHHHHHH
Q 016998          141 TEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKV---GRYKQIKRT---EGVSSTDIVGR  199 (379)
Q Consensus       141 t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~---g~~~~v~r~---~~VSST~Ir~r  199 (379)
                      +.+|+..++..++++++++|.|+.+|.+++++ +.++..   -++..+++.   ..||||.||++
T Consensus        80 ~~~~~~~~~~~~~~~~~v~G~d~~~~~~~~~~-~~~~~~~~~~~vv~~~~~~~~~~iSSt~IR~~  143 (143)
T cd02039          80 AVVFILKILLKVGPDKVVVGEDFAFGKNASYN-KDLKELFLDIEIVEVPRVRDGKKISSTLIREL  143 (143)
T ss_pred             HHHHHHHHHHHcCCcEEEECCccccCCchhhh-HHHHHhCCceEEEeeEecCCCcEEehHHhhcC
Confidence            12466666667899999999999999988774 333332   345666665   56999999974

Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.

>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]

Probab=99.75  E-value=3.5e-18  Score=149.88  Aligned_cols=108  Identities=21%  Similarity=0.330  Sum_probs=95.4

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeCCCCCch
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAPWEVT  334 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~~~~~~~  334 (379)
                      .++++++|+|||+|.||+++++||.+++|.|+|+|..+    ..|   +|.++++||..+++ +.+..++|-+....++.
T Consensus         2 ~~iavypGSFDPiTnGHlDii~RA~~~Fd~viVaV~~n----p~K---~plFsleER~~l~~~~~~~l~nV~V~~f~~Ll   74 (159)
T COG0669           2 MKIAVYPGSFDPITNGHLDIIKRASALFDEVIVAVAIN----PSK---KPLFSLEERVELIREATKHLPNVEVVGFSGLL   74 (159)
T ss_pred             CeeEEeCCCCCCCccchHHHHHHHHHhccEEEEEEEeC----CCc---CCCcCHHHHHHHHHHHhcCCCceEEEecccHH
Confidence            57899999999999999999999999999999999866    335   69999999998875 45889999998888899


Q ss_pred             HHHHHHcCCcEEEEc----CCCCCC-------CCCCCCceEEEEeee
Q 016998          335 KDMITTFNICLVVHG----TVSETN-------TPLTVSLQFLYLPLI  370 (379)
Q Consensus       335 ~~~i~~~~~d~vv~G----~d~~~~-------~~l~~~~evv~lp~~  370 (379)
                      .|+++++++.++|||    +|+++|       ..+..++|++|||=.
T Consensus        75 vd~ak~~~a~~ivRGLR~~sDfeYE~qma~~N~~L~~eveTvFl~~s  121 (159)
T COG0669          75 VDYAKKLGATVLVRGLRAVSDFEYELQMAHMNRKLAPEVETVFLMPS  121 (159)
T ss_pred             HHHHHHcCCCEEEEeccccchHHHHHHHHHHHHhhcccccEEEecCC
Confidence            999999999999999    677776       457779999999844

>PRK00777 phosphopantetheine adenylyltransferase; Provisional

Probab=99.72  E-value=1.6e-17  Score=147.67  Aligned_cols=132  Identities=26%  Similarity=0.335  Sum_probs=95.5

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccccH---
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITE---  142 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~---  142 (379)
                      ++|++.|+||++|.||..+|++|++++|+|+||+++|+.+.++|+.|+++.++|++|++.  +++.+.+...+.+.+   
T Consensus         2 ~~v~~gGtFDplH~GH~~ll~~A~~~~d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~--~~~~~~~~~~~~i~~i~d   79 (153)
T PRK00777          2 MKVAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKK--FLKAVEYDREYEIVKIDD   79 (153)
T ss_pred             cEEEEecccCCCCHHHHHHHHHHHHcCCEEEEEEcCCccccccCCCCCCCHHHHHHHHHH--HHHhcCCCCcEEEEeccc
Confidence            579999999999999999999999999999999999987766666899999999999996  566654443333221   


Q ss_pred             HHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCC----eEEEecc-----CCCCCHHHHHHHHHhc
Q 016998          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKR-----TEGVSSTDIVGRILSS  203 (379)
Q Consensus       143 efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g----~~~~v~r-----~~~VSST~Ir~rI~~~  203 (379)
                      .|....  ..++|++|+|+|...|  +...-+..++.|    ++..++.     ++.+|||.||+++...
T Consensus        80 ~~gp~~--~~~~d~ivvs~et~~~--~~~in~~r~~~gl~~l~i~~v~~~~~~~~~~~SSt~Ir~~~~~~  145 (153)
T PRK00777         80 PYGPAL--EDDFDAIVVSPETYPG--ALKINEIRRERGLKPLEIVVIDFVLAEDGKPISSTRIRRGEIDE  145 (153)
T ss_pred             cCCCcc--ccCCCEEEEChhhhhh--HHHHHHHHHHCCCCceEEEEEeeeecCCCCeeeHHHHHHhhhcc
Confidence            121111  1369999999995433  222233444444    2445554     5679999999998754

>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional

Probab=99.66  E-value=4.4e-16  Score=136.31  Aligned_cols=109  Identities=20%  Similarity=0.247  Sum_probs=91.2

Q ss_pred             eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHH-HHccCcCceEeCCC-CCch
Q 016998          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDEVIIGAP-WEVT  334 (379)
Q Consensus       257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v-~~~~~Vd~Vii~~~-~~~~  334 (379)
                      ++++++|+|||+|.||++++++|.+++|.|+|++..+    ..|   .+.++.+||..++ ++++..+.|.+... .+++
T Consensus         2 kiai~~GSFDPih~GHl~ii~~A~~~~D~v~v~v~~n----p~K---~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~~l~   74 (140)
T PRK13964          2 KIAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSIN----PDK---SNASDLDSRFKNVKNKLKDFKNVEVLINENKLT   74 (140)
T ss_pred             eEEEEeeeeCCCCHHHHHHHHHHHHhCCEEEEEeccC----CCC---CCCCCHHHHHHHHHHHHcCCCCcEEecCcCCcH
Confidence            5799999999999999999999999999999999876    335   4789999999888 55577777776543 5899


Q ss_pred             HHHHHHcCCcEEEEc----CCCCCC-------CCCCCCceEEEEeeecc
Q 016998          335 KDMITTFNICLVVHG----TVSETN-------TPLTVSLQFLYLPLINY  372 (379)
Q Consensus       335 ~~~i~~~~~d~vv~G----~d~~~~-------~~l~~~~evv~lp~~~~  372 (379)
                      .+++++.+++++|||    .|++++       ..+++++|+++||=...
T Consensus        75 v~~~~~~~a~~ivrGlR~~~DfeyE~~~a~~n~~l~~~ietvfl~~~~~  123 (140)
T PRK13964         75 AEIAKKLGANFLIRSARNNIDFQYEIVLAAGNKSLNNDLETILIIPDYD  123 (140)
T ss_pred             HHHHHHCCCeEEEEecCCCccHHHHHHHHHHHHhhcCCCeEEEeecCCC
Confidence            999999999999999    455555       46888999999985543

>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional

Probab=99.58  E-value=1.5e-14  Score=129.22  Aligned_cols=130  Identities=20%  Similarity=0.187  Sum_probs=88.1

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-CccccEEEeCCCccccHH
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYAITEQ  143 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~Vv~~~p~~~t~e  143 (379)
                      |+++++.|+||++|.||+.++++|++.+|+|++++..++    .| .++.+.++|++|++. ++.++.+.+..--.++.+
T Consensus         1 ~~igi~gGsFdP~H~GHl~~~~~a~~~~d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t~~   75 (159)
T PRK00168          1 MKIAIYPGSFDPITNGHLDIIERASRLFDEVIVAVAINP----SK-KPLFSLEERVELIREATAHLPNVEVVSFDGLLVD   75 (159)
T ss_pred             CcEEEEeeecCCCCHHHHHHHHHHHHHCCEEEEEECCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEEecCCccHHH
Confidence            357999999999999999999999999999999987654    23 578999999999997 778887766432233445


Q ss_pred             HHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHh-C----CeEEEeccC--CCCCHHHHHHHHHhc
Q 016998          144 FMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK-V----GRYKQIKRT--EGVSSTDIVGRILSS  203 (379)
Q Consensus       144 fl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~-~----g~~~~v~r~--~~VSST~Ir~rI~~~  203 (379)
                      ++    +++++++++.|-|-....+..-......+ .    ..+..+...  ..||||.||+++..+
T Consensus        76 ~~----~~~~~~~~~~gl~~w~d~e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~i~~g  138 (159)
T PRK00168         76 FA----REVGATVIVRGLRAVSDFEYEFQMAGMNRKLAPEIETVFLMPSPEYSFISSSLVKEVARLG  138 (159)
T ss_pred             HH----HHcCCCEEEecCcchhhHHHHHHHHHhCCCCCCCCcEEEEeCCCCcceecHHHHHHHHHcC
Confidence            54    46789999999442111010000000111 1    112222222  269999999999854

>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain

Probab=99.58  E-value=1.6e-14  Score=131.86  Aligned_cols=127  Identities=21%  Similarity=0.208  Sum_probs=94.3

Q ss_pred             EecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC-cccc---------EEEeCC--C
Q 016998           70 MDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVD---------EVIANA--P  137 (379)
Q Consensus        70 ~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~VD---------~Vv~~~--p  137 (379)
                      +.-.||++|.||..++++|.+.++.+.|.+.+.      + .+.++.++|++|++.. +...         ..+...  |
T Consensus         4 ~~~~~DPiH~GHl~i~~~a~~~~d~~~V~v~p~------~-~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v~~~~~~   76 (182)
T smart00764        4 IVMNANPFTLGHRYLVEQAAAECDWVHLFVVSE------D-ASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATFP   76 (182)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHCCceEEEEEeC------C-CCCCCHHHHHHHHHHHhccCCCEEEEecCCceeccccCh
Confidence            345799999999999999999999888777654      2 3567999999999852 2212         111111  1


Q ss_pred             ccc---------------cHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCC----eEEEecc----CCCCCHH
Q 016998          138 YAI---------------TEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKR----TEGVSST  194 (379)
Q Consensus       138 ~~~---------------t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g----~~~~v~r----~~~VSST  194 (379)
                      --+               .++|++.+.+++++..|++|+||+||.++.|+.+.|++.+    ++..+++    ++.+|||
T Consensus        77 ~~~~~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df~FG~~~~G~~~~L~~~~~~g~~v~~I~r~~~~g~~iSST  156 (182)
T smart00764       77 SYFLKEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPVTAIYNQTMKQTLLSPAIEVVEIERKKANGQPISAS  156 (182)
T ss_pred             hhhcCchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCCCCCCCCccCHHHHHHHhhCCCEEEEEecccCCCcEECHH
Confidence            111               0378875556799999999999999999999999988764    3556666    3459999


Q ss_pred             HHHHHHHhc
Q 016998          195 DIVGRILSS  203 (379)
Q Consensus       195 ~Ir~rI~~~  203 (379)
                      .||+.|.++
T Consensus       157 ~IR~~L~~G  165 (182)
T smart00764      157 TVRKLLKEG  165 (182)
T ss_pred             HHHHHHHcC
Confidence            999999754

Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.

>cd02169 Citrate_lyase_ligase Citrate lyase ligase

Probab=99.57  E-value=1.5e-14  Score=141.55  Aligned_cols=130  Identities=18%  Similarity=0.185  Sum_probs=96.8

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC-c---------cccEEEe
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-K---------WVDEVIA  134 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~---------~VD~Vv~  134 (379)
                      .+++.+.|+|||+|.||..++++|.+.++.++|.+.+.      + ++.++.++|++|++.. +         +-|.++.
T Consensus       114 ~~~~~~~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~~------~-~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~l~v~  186 (297)
T cd02169         114 KKIAAIVMNANPFTLGHRYLVEKAAAENDWVHLFVVSE------D-KSLFSFADRFKLVKKGTKHLKNVTVHSGGDYIIS  186 (297)
T ss_pred             CceEEEEecCCCCchHHHHHHHHHHhhCCeEEEEEEcC------C-CCCCCHHHHHHHHHHHhCCCCCEEEEecCCeeec
Confidence            56899999999999999999999999999888877552      2 4678999999999842 1         1122222


Q ss_pred             CCCcc----------------cc-HHHHHHHh-hccCccEEEEcCCCCCCCCCchHHHHHHhCCe-----EEEecc----
Q 016998          135 NAPYA----------------IT-EQFMNRLF-NEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR-----YKQIKR----  187 (379)
Q Consensus       135 ~~p~~----------------~t-~efl~~ll-~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~-----~~~v~r----  187 (379)
                      ...|.                ++ ++|++ ++ +++++..||+|+||+||.++.|+...++. |+     +..++.    
T Consensus       187 ~~~~~~~~~~~~~~~~~~~a~lsa~~Fi~-iL~~~l~~~~ivvG~Df~FG~~r~G~~~l~~~-~~~~gf~v~~v~~~~~~  264 (297)
T cd02169         187 SATFPSYFIKEQDVVIKAQTALDARIFRK-YIAPALNITKRYVGEEPFSRVTAIYNQTMQEE-LLSPAIEVIEIERKKYD  264 (297)
T ss_pred             cccChhhhcCChhHHHHHHhcCCHHHHHH-HHHHHcCCcEEEEcCCCCCCCcchhHHHHHHh-cccCCCEEEEecccccC
Confidence            22210                00 28887 66 56999999999999999999999555554 43     344443    


Q ss_pred             CCCCCHHHHHHHHHhc
Q 016998          188 TEGVSSTDIVGRILSS  203 (379)
Q Consensus       188 ~~~VSST~Ir~rI~~~  203 (379)
                      .+.||||.||+.|.++
T Consensus       265 g~~ISST~IR~~l~~G  280 (297)
T cd02169         265 GQPISASTVRQLLKEG  280 (297)
T ss_pred             CcEEcHHHHHHHHHcC
Confidence            3469999999999866

Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.

>PRK00777 phosphopantetheine adenylyltransferase; Provisional

Probab=99.56  E-value=1.2e-14  Score=129.24  Aligned_cols=110  Identities=20%  Similarity=0.278  Sum_probs=83.1

Q ss_pred             eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc----cCcCceEe---CC
Q 016998          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC----RYVDEVII---GA  329 (379)
Q Consensus       257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~----~~Vd~Vii---~~  329 (379)
                      +.|++.|+||++|.||+.+|++|+.++|+|+|||++|+.++++|+  .|++++++|+++++.+    ...+.+.+   .+
T Consensus         2 ~~v~~gGtFDplH~GH~~ll~~A~~~~d~livgi~~d~~~~~~K~--~~i~~~e~R~~~v~~~~~~~~~~~~~~i~~i~d   79 (153)
T PRK00777          2 MKVAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKK--HKVRPYEVRLKNLKKFLKAVEYDREYEIVKIDD   79 (153)
T ss_pred             cEEEEecccCCCCHHHHHHHHHHHHcCCEEEEEEcCCccccccCC--CCCCCHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence            468999999999999999999999999999999999998877775  6999999999999854    12233332   23


Q ss_pred             CCCchHHHHHHcCCcEEEEcCC-CCCCC--------CCCCCceEEEEeeecc
Q 016998          330 PWEVTKDMITTFNICLVVHGTV-SETNT--------PLTVSLQFLYLPLINY  372 (379)
Q Consensus       330 ~~~~~~~~i~~~~~d~vv~G~d-~~~~~--------~l~~~~evv~lp~~~~  372 (379)
                      +++.+.    ..++|++|.|+| |....        .--..++++.+|+..+
T Consensus        80 ~~gp~~----~~~~d~ivvs~et~~~~~~in~~r~~~gl~~l~i~~v~~~~~  127 (153)
T PRK00777         80 PYGPAL----EDDFDAIVVSPETYPGALKINEIRRERGLKPLEIVVIDFVLA  127 (153)
T ss_pred             cCCCcc----ccCCCEEEEChhhhhhHHHHHHHHHHCCCCceEEEEEeeeec
Confidence            344332    236999999988 54431        1113488899998653

>PLN02388 phosphopantetheine adenylyltransferase

Probab=99.55  E-value=5.1e-15  Score=134.22  Aligned_cols=138  Identities=18%  Similarity=0.200  Sum_probs=94.0

Q ss_pred             CCCCCeEEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEccchhhhccCC-CCCCCHHHHHHHHhcCc----c---ccE
Q 016998           61 GKKKRVRVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKG-PPVLSMEERLALVSGLK----W---VDE  131 (379)
Q Consensus        61 ~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~~~----~---VD~  131 (379)
                      .......|+++|+||++|.||+.||++|.++| +.++||+.+|+.....+. ..+.+.++|.+.++..-    .   ++.
T Consensus        15 ~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~~~~p~~~~~i   94 (177)
T PLN02388         15 PPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVEEYIKSIKPELVVQA   94 (177)
T ss_pred             CCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcccCCCcccCCHHHHHHHHHHHHHHcCCCceEEE
Confidence            33446689999999999999999999999998 479999999997533222 57999999999998631    1   122


Q ss_pred             EEeCCCccccHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCe--EEEec---c---CCCCCHHHHHHHHHhc
Q 016998          132 VIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR--YKQIK---R---TEGVSSTDIVGRILSS  203 (379)
Q Consensus       132 Vv~~~p~~~t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~--~~~v~---r---~~~VSST~Ir~rI~~~  203 (379)
                      +-+..||..+..       .-+.|++|++..-..|...-+.+...+....  ++.++   .   ...||||+||+|+.+.
T Consensus        95 ~~i~D~~Gpt~~-------~~~~d~LVVS~ET~~g~~~IN~~R~e~Gl~pL~i~~v~~v~~~~~~~kiSST~iR~~~~~~  167 (177)
T PLN02388         95 EPIIDPYGPSIV-------DENLEAIVVSKETLPGGLSVNKKRAERGLSQLKIEVVDIVPEESTGNKLSSTTLRRLEAEK  167 (177)
T ss_pred             EEecCCCCCccc-------CCCCCEEEEcHhHhhhHHHHHHHHHHCCCCCeEEEEEEeEecCCCCCccCHHHHHHHHHHH
Confidence            223455544321       1368999999988776544443332222222  22221   1   3579999999999876


Q ss_pred             cc
Q 016998          204 ME  205 (379)
Q Consensus       204 ~~  205 (379)
                      .+
T Consensus       168 ~~  169 (177)
T PLN02388        168 AV  169 (177)
T ss_pred             HH
Confidence            44

>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional

Probab=99.55  E-value=2.9e-14  Score=127.44  Aligned_cols=106  Identities=20%  Similarity=0.329  Sum_probs=88.5

Q ss_pred             eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHH-ccCcCceEeCCCCCchH
Q 016998          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVTK  335 (379)
Q Consensus       257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~-~~~Vd~Vii~~~~~~~~  335 (379)
                      +++++.|+|||+|.||+.++++|++.+|.|+|+++++.    .|   .|.++.++|+.+++. ++++|.+.+...++.+.
T Consensus         2 ~igi~gGsFdP~H~GHl~~~~~a~~~~d~v~v~~~~~~----~k---~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t~   74 (159)
T PRK00168          2 KIAIYPGSFDPITNGHLDIIERASRLFDEVIVAVAINP----SK---KPLFSLEERVELIREATAHLPNVEVVSFDGLLV   74 (159)
T ss_pred             cEEEEeeecCCCCHHHHHHHHHHHHHCCEEEEEECCCC----CC---CCCCCHHHHHHHHHHHHcCCCCEEEecCCccHH
Confidence            68999999999999999999999999999999998763    24   489999999999977 89999999987778899


Q ss_pred             HHHHHcCCcEEEEc----CCCCCC-------CCCCCCceEEEEee
Q 016998          336 DMITTFNICLVVHG----TVSETN-------TPLTVSLQFLYLPL  369 (379)
Q Consensus       336 ~~i~~~~~d~vv~G----~d~~~~-------~~l~~~~evv~lp~  369 (379)
                      ++++.++++++++|    .||++.       ..+...+++++++.
T Consensus        75 ~~~~~~~~~~~~~gl~~w~d~e~~~~~~~~~r~~~~~~~~i~~~~  119 (159)
T PRK00168         75 DFAREVGATVIVRGLRAVSDFEYEFQMAGMNRKLAPEIETVFLMP  119 (159)
T ss_pred             HHHHHcCCCEEEecCcchhhHHHHHHHHHhCCCCCCCCcEEEEeC
Confidence            99999999999999    455543       11222467888763

>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase

Probab=99.54  E-value=9.2e-14  Score=125.04  Aligned_cols=126  Identities=23%  Similarity=0.324  Sum_probs=84.6

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHH-hcCcccc-E---EEeCCCcccc
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV-SGLKWVD-E---VIANAPYAIT  141 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l-~~~~~VD-~---Vv~~~p~~~t  141 (379)
                      |+++.|.||++|.||++++++|++.+|+|++++.+++.  .+|..+.++.+||++|+ ++++.++ .   +++.......
T Consensus         1 rgl~~G~FdP~H~GHl~ii~~a~~~~D~lii~i~s~~~--~~k~~~p~~~~eR~~mi~~al~~~~~~~~~~vP~~d~~~~   78 (165)
T TIGR01527         1 RGFYIGRFQPFHLGHLEVIKKIAEEVDELIIGIGSAQE--SHTLENPFTAGERILMITQSLKEVGDLTYYIIPIEDIERN   78 (165)
T ss_pred             CeEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCCC--CCCCCCCCCHHHHHHHHHHHHhcCCCceEEEEecCCccHH
Confidence            47899999999999999999999999999999888764  33444555779999999 4555553 3   2221111111


Q ss_pred             HHHHHHHhhc-cCccEEEEcCCCCCCCCCchHHHHHHhCC-eEEEec---cCCCCCHHHHHHHHHhc
Q 016998          142 EQFMNRLFNE-HKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIK---RTEGVSSTDIVGRILSS  203 (379)
Q Consensus       142 ~efl~~ll~~-~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-~~~~v~---r~~~VSST~Ir~rI~~~  203 (379)
                      ..+...+... -++|.|+.|+..        ....+++.| ++...+   |+ ++|||+||++|.++
T Consensus        79 ~~w~~~v~~~~p~~D~vf~~~~~--------~~~~f~e~g~~v~~~p~~~r~-~~S~T~IR~~i~~~  136 (165)
T TIGR01527        79 SIWVSYVESMTPPFDVVYSNNPL--------VRRLFKEAGYEVKRPPMFNRK-EYSGTEIRRRMLNG  136 (165)
T ss_pred             HHHHHHHHHhCCCCCEEEECCHH--------HHHHHHHcCCEEEECCCcCCC-cccHHHHHHHHHcC
Confidence            2222111110 178999999432        245566666 445555   55 89999999999864

In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.

>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional

Probab=99.51  E-value=4.5e-14  Score=138.81  Aligned_cols=110  Identities=19%  Similarity=0.365  Sum_probs=88.2

Q ss_pred             EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc--cCcCceEe---CCCCC
Q 016998          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC--RYVDEVII---GAPWE  332 (379)
Q Consensus       258 ~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~--~~Vd~Vii---~~~~~  332 (379)
                      +|++.|+||+||.||+.+|++|+.+||+|||||++|+.+.++|.  +| .|+++|+..|+++  ++++.+.+   .++++
T Consensus         2 ~V~vgGTFD~lH~GH~~lL~~A~~~gd~LiVgvt~D~~~~~~k~--~~-~~~e~R~~~v~~fl~~~~~~~~i~~i~D~~G   78 (322)
T PRK01170          2 ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVRKNKV--YP-IPYEDRKRKLENFIKKFTNKFRIRPIDDRYG   78 (322)
T ss_pred             EEEEccccccCChHHHHHHHHHHHcCCEEEEEEccHHHHHhcCC--CC-CCHHHHHHHHHHHHHhcCCcEEEEecCCCCC
Confidence            69999999999999999999999999999999999999987664  57 9999999999995  77777555   34555


Q ss_pred             chHHHHHHcCCcEEEEcCCCCCC-C-----CCC---CCceEEEEeeecce
Q 016998          333 VTKDMITTFNICLVVHGTVSETN-T-----PLT---VSLQFLYLPLINYC  373 (379)
Q Consensus       333 ~~~~~i~~~~~d~vv~G~d~~~~-~-----~l~---~~~evv~lp~~~~~  373 (379)
                      .+   +..-++|++|.|.+.... .     ..+   .-++++.+|+..+|
T Consensus        79 pt---~~~~~~d~IVVS~ET~~~~~~IN~~R~e~Gl~pleIv~I~~v~~~  125 (322)
T PRK01170         79 NT---LYEEDYEIIVVSPETYQRALKINEIRIKNGLPPLKIVRVPYVLAE  125 (322)
T ss_pred             CC---cccCCCCEEEEeccccccHHHHHHHHHHCCCCceEEEEEEeEEcC
Confidence            43   456789999999876544 1     111   24788999887655

>cd02163 PPAT Phosphopantetheine adenylyltransferase

Probab=99.51  E-value=1.1e-13  Score=122.98  Aligned_cols=127  Identities=21%  Similarity=0.227  Sum_probs=84.9

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-CccccEEEeCCCccccHHHHH
Q 016998           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYAITEQFMN  146 (379)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~Vv~~~p~~~t~efl~  146 (379)
                      +++.|+||++|.||..++++|.+.+|++++++.+++    .| +++++.++|++|++. ++.++.+.+..-..++.+++ 
T Consensus         2 ~i~gGsFdP~H~GHl~l~~~a~~~~d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~~~v~~~es~t~~~l-   75 (153)
T cd02163           2 AVYPGSFDPITNGHLDIIERASKLFDEVIVAVAVNP----SK-KPLFSLEERVELIREATKHLPNVEVDGFDGLLVDFA-   75 (153)
T ss_pred             EEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEecCCcchHHHHH-
Confidence            689999999999999999999999999999988654    24 478999999999986 66677666532112344554 


Q ss_pred             HHhhccCccEEEEcCCCCCCCCCchHHHHHHhCC-----eEEEeccC--CCCCHHHHHHHHHhc
Q 016998          147 RLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-----RYKQIKRT--EGVSSTDIVGRILSS  203 (379)
Q Consensus       147 ~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-----~~~~v~r~--~~VSST~Ir~rI~~~  203 (379)
                         +.++.+++++|-|--...+..-......+.+     .+..+...  ..+|||.||+++..+
T Consensus        76 ---~~l~~~~~i~G~d~~~~~e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~~~~g  136 (153)
T cd02163          76 ---RKHGANVIVRGLRAVSDFEYEFQMAGMNRKLAPEIETVFLMASPEYSFISSSLVKEIARFG  136 (153)
T ss_pred             ---HHcCCCEEEECCcchhhHHHHHHHHHhCCCCCCCCcEEEEeCCCccceecHHHHHHHHHcC
Confidence               4678899999955321111110010111111     12222222  259999999999855

Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.

>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional

Probab=99.50  E-value=4.6e-14  Score=138.76  Aligned_cols=125  Identities=25%  Similarity=0.354  Sum_probs=90.1

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC--ccccEEE---eCCCcccc
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL--KWVDEVI---ANAPYAIT  141 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~--~~VD~Vv---~~~p~~~t  141 (379)
                      +|++.|+||.+|.||..+|++|+++||+|+|||++|+.+.++|..| .++++|.++++++  +.++.+.   +..||..+
T Consensus         2 ~V~vgGTFD~lH~GH~~lL~~A~~~gd~LiVgvt~D~~~~~~k~~~-~~~e~R~~~v~~fl~~~~~~~~i~~i~D~~Gpt   80 (322)
T PRK01170          2 ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVRKNKVYP-IPYEDRKRKLENFIKKFTNKFRIRPIDDRYGNT   80 (322)
T ss_pred             EEEEccccccCChHHHHHHHHHHHcCCEEEEEEccHHHHHhcCCCC-CCHHHHHHHHHHHHHhcCCcEEEEecCCCCCCC
Confidence            6999999999999999999999999999999999999887666667 9999999999984  4444322   23444322


Q ss_pred             HHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCC----eEEEecc---C--CCCCHHHHHHHHH
Q 016998          142 EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKR---T--EGVSSTDIVGRIL  201 (379)
Q Consensus       142 ~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g----~~~~v~r---~--~~VSST~Ir~rI~  201 (379)
                      .       ...++|++|+|.+...+..  ..-+..++.|    +++.++.   .  ..+|||+||+.-.
T Consensus        81 ~-------~~~~~d~IVVS~ET~~~~~--~IN~~R~e~Gl~pleIv~I~~v~~~d~~~iSSTrIr~~ei  140 (322)
T PRK01170         81 L-------YEEDYEIIVVSPETYQRAL--KINEIRIKNGLPPLKIVRVPYVLAEDLFPISSTRIINGEI  140 (322)
T ss_pred             c-------ccCCCCEEEEeccccccHH--HHHHHHHHCCCCceEEEEEEeEEcCCCCcccHHHHhhhhc
Confidence            1       1347999999999866532  2223334444    2333333   2  3489999998654

>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT)

Probab=99.46  E-value=8.2e-14  Score=120.73  Aligned_cols=62  Identities=42%  Similarity=0.558  Sum_probs=47.1

Q ss_pred             EEecccCcCCHHHHHHHHHHHHcCCe-EEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccE
Q 016998           69 YMDGCFDLMHYGHANALRQAKALGDE-LVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE  131 (379)
Q Consensus        69 ~~~G~FD~lH~GH~~lL~qA~~~~d~-LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~  131 (379)
                      +++|+||++|.||.++|++|++.++. +++++.++....+.+ +++++.++|++|++.+...+.
T Consensus         1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k~~-~~~~~~~~R~~ml~~~~~~~~   63 (157)
T PF01467_consen    1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHKDK-KPIFSFEERLEMLRAAFKDDP   63 (157)
T ss_dssp             EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHSTT-SSSSTHHHHHHHHHHHHTTCT
T ss_pred             CeeeEcCcccHHHHHHHHHHHHhccccccccccccccccccc-cccCcHHHHHHHHHHHHhhcC
Confidence            57999999999999999999999986 577777777543322 489999999999998766555

Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....

>TIGR00125 cyt_tran_rel cytidyltransferase-related domain

Probab=99.46  E-value=1.3e-13  Score=104.49  Aligned_cols=65  Identities=43%  Similarity=0.719  Sum_probs=59.4

Q ss_pred             EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCc
Q 016998          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDE  324 (379)
Q Consensus       258 ~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~  324 (379)
                      ++++.|+||++|.||+.++++|++.+|.++|+|.+|+..+..|.  .|+++.++|..++++|++++.
T Consensus         1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~~~vv~i~~~~~~~~~~~--~~~~~~~~R~~~~~~~~~~~~   65 (66)
T TIGR00125         1 RVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKG--EPVFSLEERLEMLKALKYVDE   65 (66)
T ss_pred             CEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECchHhccccCC--CCCCCHHHHHHHHHHhccccC
Confidence            47899999999999999999999999999999999988877664  399999999999999999875

Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.

>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal

Probab=99.45  E-value=1.2e-12  Score=117.48  Aligned_cols=126  Identities=21%  Similarity=0.264  Sum_probs=84.4

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHh-cCcccc------EEEeCCCcc
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVS-GLKWVD------EVIANAPYA  139 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~-~~~~VD------~Vv~~~p~~  139 (379)
                      +++++|+||++|.||.+++++|.+.+|+|+|++.++...  .+....++.+||++|++ .+...|      .++.-....
T Consensus         1 ~~v~~G~FdP~H~GHl~~i~~a~~~~d~l~v~v~s~~~~--~~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d~~   78 (163)
T cd02166           1 RALFIGRFQPFHLGHLKVIKWILEEVDELIIGIGSAQES--HTLENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPDIE   78 (163)
T ss_pred             CeEEeeccCCCCHHHHHHHHHHHHHCCEEEEEecCCCCC--CCCCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCCCC
Confidence            378999999999999999999999999999998765432  23344578899999999 445554      333321122


Q ss_pred             ccHHHHHHHhhcc-CccEEEEcCCCCCCCCCchHHHHHHhCC-eEEEeccC--CCCCHHHHHHHHHh
Q 016998          140 ITEQFMNRLFNEH-KIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKRT--EGVSSTDIVGRILS  202 (379)
Q Consensus       140 ~t~efl~~ll~~~-~~d~VV~GdD~~~g~~g~~~y~~lk~~g-~~~~v~r~--~~VSST~Ir~rI~~  202 (379)
                      ..+.+...+.... ++|.++.|++|..        ..++..| .+..++++  +++|+|.||++|.+
T Consensus        79 ~~~~w~~~v~~~vp~~div~~g~~~~~--------~~f~~~g~~v~~~p~~~~~~~s~t~iR~~~~~  137 (163)
T cd02166          79 RNSLWVSYVESLTPPFDVVYSGNPLVA--------RLFKEAGYEVRRPPMFNREEYSGTEIRRLMLG  137 (163)
T ss_pred             chHHHHHHHHHHCCCCCEEEECchHHH--------HhhhhcCCeEecCCcccCCCCCHHHHHHHHHc
Confidence            3334443322222 4788999965311        2333444 44566663  47999999999974

This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.

>TIGR00125 cyt_tran_rel cytidyltransferase-related domain

Probab=99.44  E-value=2.1e-13  Score=103.39  Aligned_cols=64  Identities=52%  Similarity=0.768  Sum_probs=57.0

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCcccc
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVD  130 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD  130 (379)
                      ++++.|+||++|.||+.++++|+++++.+++++.+|+.....|..++++.++|.++++.+.+++
T Consensus         1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   64 (66)
T TIGR00125         1 RVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALKYVD   64 (66)
T ss_pred             CEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECchHhccccCCCCCCCHHHHHHHHHHhcccc
Confidence            4799999999999999999999999999999999887766555459999999999999987765

Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.

>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial

Probab=99.42  E-value=1.5e-12  Score=115.92  Aligned_cols=119  Identities=22%  Similarity=0.314  Sum_probs=79.1

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCcccc----EEEeCCCccccH
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVD----EVIANAPYAITE  142 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD----~Vv~~~p~~~t~  142 (379)
                      ++++.|+||++|.||+.++++|++.+|++++++..+    +.| .+..+.++|++|++.+- .|    +|.. .+ .++.
T Consensus         1 i~l~gGsFdP~H~GHl~l~~~a~~~~d~v~~~~~~~----p~k-~~~~~~~~R~~m~~~a~-~~~~~~~v~~-~e-~yt~   72 (155)
T TIGR01510         1 IALYPGSFDPVTNGHLDIIKRAAALFDEVIVAVAKN----PSK-KPLFSLEERVELIKDAT-KHLPNVRVDV-FD-GLLV   72 (155)
T ss_pred             CEEEEeecCCCcHHHHHHHHHHHHhCCEEEEEEcCC----CCC-CCCcCHHHHHHHHHHHH-hhCCCeEEcC-cc-chHH
Confidence            378999999999999999999999999999988643    234 47789999999998752 33    2222 11 2344


Q ss_pred             HHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHh---CC-------eEEEeccCC---CCCHHHHHHHHHhc
Q 016998          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK---VG-------RYKQIKRTE---GVSSTDIVGRILSS  203 (379)
Q Consensus       143 efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~---~g-------~~~~v~r~~---~VSST~Ir~rI~~~  203 (379)
                      +++    +.++.++++.|-|-.      .+++.+.+   ..       ....+..+.   .+|||.||+++..+
T Consensus        73 dt~----~~l~~~~~i~G~~~~------~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~g  136 (155)
T TIGR01510        73 DYA----KELGATFIVRGLRAA------TDFEYELQMALMNKHLAPEIETVFLMASPEYAFVSSSLVKEIASFG  136 (155)
T ss_pred             HHH----HHcCCCEEEecCcch------hhHHHHHHHHhhCcccccCCcEEEEeCCcchhhccHHHHHHHHHcC
Confidence            444    456788999884421      12221111   11       111121222   69999999999865

This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.

>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain

Probab=99.40  E-value=2.5e-12  Score=110.56  Aligned_cols=110  Identities=23%  Similarity=0.236  Sum_probs=87.8

Q ss_pred             EEEEcCccccCChHHHHHHHHHHhcC-CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccC-cCceEeCCCCCc--
Q 016998          258 VVYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRY-VDEVIIGAPWEV--  333 (379)
Q Consensus       258 ~v~~~G~FDl~H~GHi~~L~~A~~~g-d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~-Vd~Vii~~~~~~--  333 (379)
                      ++++.|+||++|.||+.++++|++.+ |.++|++.++..... +  +.++++.++|+.+++++.. +|.|++......  
T Consensus         1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~-~--~~~~~~~~~R~~~l~~~~~~~~~v~~~~~~~~~~   77 (143)
T cd02039           1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKK-R--NKDPFSLHERVEMLKEILKDRLKVVPVDFPEVKI   77 (143)
T ss_pred             CeEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhc-c--cccCCCHHHHHHHHHHhccCCcEEEEEecChhhc
Confidence            47889999999999999999999999 999999999865432 1  2589999999999999986 788777432221  


Q ss_pred             ------hHHHHHHcCCcEEEEcCCCCCCC---------CCCCCceEEEEeee
Q 016998          334 ------TKDMITTFNICLVVHGTVSETNT---------PLTVSLQFLYLPLI  370 (379)
Q Consensus       334 ------~~~~i~~~~~d~vv~G~d~~~~~---------~l~~~~evv~lp~~  370 (379)
                            ....+..+++++++.|.|+....         .+..+++++.+|+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~v~G~d~~~~~~~~~~~~~~~~~~~~~vv~~~~~  129 (143)
T cd02039          78 LLAVVFILKILLKVGPDKVVVGEDFAFGKNASYNKDLKELFLDIEIVEVPRV  129 (143)
T ss_pred             cCHHHHHHHHHHHcCCcEEEECCccccCCchhhhHHHHHhCCceEEEeeEec
Confidence                  22456778999999999876542         45578999999987

Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.

>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes

Probab=99.39  E-value=7.2e-13  Score=116.61  Aligned_cols=122  Identities=28%  Similarity=0.348  Sum_probs=81.0

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEccchhhhccCC--CCCCCHHHHHHHHhcC----c---cccEEEeCC
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKG--PPVLSMEERLALVSGL----K---WVDEVIANA  136 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~~----~---~VD~Vv~~~  136 (379)
                      +|++.|+||++|.||+.+|++|.+++ +++++|+.+|+.. ..|.  .++++.++|+++++.+    .   -++.+-...
T Consensus         1 ~v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~-~~k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~d   79 (143)
T cd02164           1 KVAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELL-KNKSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPIDD   79 (143)
T ss_pred             CEEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhc-ccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccC
Confidence            38899999999999999999999998 7899999998843 3343  3689999999999863    1   112222345


Q ss_pred             CccccHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCC----eEEEecc------CCCCCHHHHHH
Q 016998          137 PYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKR------TEGVSSTDIVG  198 (379)
Q Consensus       137 p~~~t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g----~~~~v~r------~~~VSST~Ir~  198 (379)
                      ||..+..       .-..|++|+...-..|...-...  -++.|    +++.++.      ...||||+||+
T Consensus        80 ~~Gpt~~-------~~~~d~lVVS~ET~~~~~~iN~~--R~~~gl~pl~i~~v~~v~~~~~~~kiSST~iR~  142 (143)
T cd02164          80 PYGPTGT-------DPDLEAIVVSPETYPGALKINRK--REENGLSPLEIVVVPLVKADEDGEKISSTRIRR  142 (143)
T ss_pred             CCCCccc-------CCCCCEEEEcHHHhhhHHHHHHH--HHHCCCCceeEEEEEeeccCCCCCeecchhhhC
Confidence            5543321       12578999997765543322222  12333    1233322      34699999996

The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.

>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=99.38  E-value=4.2e-12  Score=117.55  Aligned_cols=136  Identities=21%  Similarity=0.167  Sum_probs=90.4

Q ss_pred             CCeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCC-CCCCCHHHHHHHHhcC-ccccEEEe-----
Q 016998           64 KRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSGL-KWVDEVIA-----  134 (379)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~~-~~VD~Vv~-----  134 (379)
                      .+++++++|+||++|.||+.++++|++..  |.+++.+.+.+.   .|. +.+++.++|++|++.. ...+.+..     
T Consensus         3 ~~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~---~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~   79 (203)
T PRK00071          3 MKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPP---HKPQKPLAPLEHRLAMLELAIADNPRFSVSDIEL   79 (203)
T ss_pred             CcEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHhcCCCceEEeHHHH
Confidence            35688999999999999999999999876  777777766542   243 4688999999999742 33333332     


Q ss_pred             -CCCccccHHHHHHHhhccCcc---EEEEcCCCCCCCCCchHHHHHHhCCeEEEecc-----------------------
Q 016998          135 -NAPYAITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKR-----------------------  187 (379)
Q Consensus       135 -~~p~~~t~efl~~ll~~~~~d---~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r-----------------------  187 (379)
                       .....+|.+.++.+.+.+ ++   ++++|.|--..-..+..++.+-+...+.+++|                       
T Consensus        80 ~~~~~syT~~tl~~l~~~~-p~~~~~fiiG~D~l~~l~~W~~~~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~i  158 (203)
T PRK00071         80 ERPGPSYTIDTLRELRARY-PDVELVFIIGADALAQLPRWKRWEEILDLVHFVVVPRPGYPLEALALPALQQLLEAAGAI  158 (203)
T ss_pred             hCCCCCCHHHHHHHHHHHC-CCCcEEEEEcHHHhhhcccccCHHHHHHhCcEEEEeCCCCCccccchhHHHHhhccCCCE
Confidence             123345556776655554 33   89999995433334444544444444433333                       


Q ss_pred             ------CCCCCHHHHHHHHHhc
Q 016998          188 ------TEGVSSTDIVGRILSS  203 (379)
Q Consensus       188 ------~~~VSST~Ir~rI~~~  203 (379)
                            ...||||+||+++.++
T Consensus       159 ~~~~~~~~~ISST~IR~~l~~g  180 (203)
T PRK00071        159 TLLDVPLLAISSTAIRERIKEG  180 (203)
T ss_pred             EEEeCCCCccCHHHHHHHHHcC
Confidence                  1249999999999854

>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]

Probab=99.36  E-value=5e-12  Score=116.83  Aligned_cols=137  Identities=23%  Similarity=0.198  Sum_probs=102.7

Q ss_pred             CCeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCC-CCCCCHHHHHHHHhc-Ccccc------EEE
Q 016998           64 KRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVD------EVI  133 (379)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~-~~~VD------~Vv  133 (379)
                      .+++++++|+||++|.||+.+.++|.+..  |+|++.++..+   ..|. +...+.++|++|++- ++...      ..+
T Consensus         2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~---p~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~   78 (197)
T COG1057           2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVP---PHKKKKELASAEHRLAMLELAIEDNPRFEVSDREI   78 (197)
T ss_pred             CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCC---CCCCCccCCCHHHHHHHHHHHHhcCCCcceeHHHH
Confidence            46789999999999999999999999976  55565544433   3444 679999999999973 22222      223


Q ss_pred             eCCCccccHHHHHHHhhccCcc---EEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCC---------------------
Q 016998          134 ANAPYAITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTE---------------------  189 (379)
Q Consensus       134 ~~~p~~~t~efl~~ll~~~~~d---~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~---------------------  189 (379)
                      ......+|.+.++.+.+++++|   +.++|.|---.-..+..++.+.+..++..++|..                     
T Consensus        79 ~r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~~W~~~~ell~~~~~vv~~Rp~~~~~~~~~~~~~~~~~~~~~~  158 (197)
T COG1057          79 KRGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLPKWYDWDELLKLVTFVVAPRPGYGELELSLLSSGGAIILLDLP  158 (197)
T ss_pred             HcCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhhhhhhhhHHHHHHhCCEEEEecCCchhhhhhhhcCCceEEEccCc
Confidence            3445567778888776678888   5899999765556677888888888887777632                     


Q ss_pred             --CCCHHHHHHHHHhc
Q 016998          190 --GVSSTDIVGRILSS  203 (379)
Q Consensus       190 --~VSST~Ir~rI~~~  203 (379)
                        .||||.||+++..+
T Consensus       159 ~~~ISSt~IR~~~~~~  174 (197)
T COG1057         159 RLDISSTEIRERIRRG  174 (197)
T ss_pred             cccCchHHHHHHHhCC
Confidence              49999999999865

>cd02163 PPAT Phosphopantetheine adenylyltransferase

Probab=99.35  E-value=5.6e-12  Score=112.01  Aligned_cols=87  Identities=21%  Similarity=0.361  Sum_probs=77.0

Q ss_pred             EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHH-ccCcCceEeCCCCCchHH
Q 016998          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVTKD  336 (379)
Q Consensus       258 ~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~-~~~Vd~Vii~~~~~~~~~  336 (379)
                      ++++.|+|||+|.||+.++++|++.+|.|+|+++++.    .|   .|.++.++|+.+++. ++.++.+.+...+..+.+
T Consensus         1 i~i~gGsFdP~H~GHl~l~~~a~~~~d~v~v~~~~~~----~k---~~~~~~~~R~~ml~~a~~~~~~~~v~~~es~t~~   73 (153)
T cd02163           1 IAVYPGSFDPITNGHLDIIERASKLFDEVIVAVAVNP----SK---KPLFSLEERVELIREATKHLPNVEVDGFDGLLVD   73 (153)
T ss_pred             CEEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CC---CCCCCHHHHHHHHHHHHcCCCCEEecCCcchHHH
Confidence            4688999999999999999999999999999998763    24   478999999999976 799999999876678999


Q ss_pred             HHHHcCCcEEEEcCC
Q 016998          337 MITTFNICLVVHGTV  351 (379)
Q Consensus       337 ~i~~~~~d~vv~G~d  351 (379)
                      +++.++.+++++|.|
T Consensus        74 ~l~~l~~~~~i~G~d   88 (153)
T cd02163          74 FARKHGANVIVRGLR   88 (153)
T ss_pred             HHHHcCCCEEEECCc
Confidence            999999999999943

Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.

>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=99.34  E-value=1.2e-11  Score=117.99  Aligned_cols=117  Identities=21%  Similarity=0.171  Sum_probs=78.5

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-Ccc----------ccE
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKW----------VDE  131 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~----------VD~  131 (379)
                      +++++.+|+||++|.||+.++++|.+..  |++++....++   ..| ....+.++|++|++. ++.          .|.
T Consensus        22 ~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~p---p~K-~~~~~~~~Rl~M~~lAi~~~~~~~~~~~v~~~   97 (243)
T PRK06973         22 RRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQP---WQK-ADVSAAEHRLAMTRAAAASLVLPGVTVRVATD   97 (243)
T ss_pred             ceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcC---CCC-CCCCCHHHHHHHHHHHHHhccCCCceEEEeHh
Confidence            4578999999999999999999999875  77777766543   234 567899999999973 111          111


Q ss_pred             EEeCCCccccHHHHHHHhhccCcc---EEEEcCCCCCCCCCchHHHHHHhCCeEEEe
Q 016998          132 VIANAPYAITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQI  185 (379)
Q Consensus       132 Vv~~~p~~~t~efl~~ll~~~~~d---~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v  185 (379)
                      -+......+|-+.++.+-+++.++   ++++|.|--..-..+..++.+-+...+.++
T Consensus        98 Ei~~~g~syTidTL~~l~~~~~p~~~~~fiiG~D~l~~l~~W~~~~~L~~~~~lvV~  154 (243)
T PRK06973         98 EIEHAGPTYTVDTLARWRERIGPDASLALLIGADQLVRLDTWRDWRRLFDYAHLCAA  154 (243)
T ss_pred             hhhCCCCCcHHHHHHHHHHHcCCCCCEEEEEchhhHhhcCCcccHHHHHHhCCEEEE
Confidence            122223445667777766667445   799999965444455555555554444433

>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase

Probab=99.34  E-value=7.9e-12  Score=114.63  Aligned_cols=133  Identities=20%  Similarity=0.171  Sum_probs=90.8

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCc-cccEEEe------CCCc
Q 016998           68 VYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK-WVDEVIA------NAPY  138 (379)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~-~VD~Vv~------~~p~  138 (379)
                      ++++|+||++|.||..++++|++.+  |++.+.+..++.   .|+....+.++|++|++.+. ....+..      ....
T Consensus         2 ~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~~~~   78 (192)
T cd02165           2 ALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPP---HKPPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKRDGP   78 (192)
T ss_pred             eEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhCCCC
Confidence            6899999999999999999999998  888887765432   24357889999999998532 2222222      1123


Q ss_pred             cccHHHHHHHhhccC-cc-EEEEcCCCCCCCCCchHHHHHHhCCeEEEeccC--------------------------CC
Q 016998          139 AITEQFMNRLFNEHK-ID-YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT--------------------------EG  190 (379)
Q Consensus       139 ~~t~efl~~ll~~~~-~d-~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~--------------------------~~  190 (379)
                      .+|.+.++.+.+.+. .+ ++++|.|--..-..+..++.+.+...+.+++|.                          ..
T Consensus        79 ~~t~~tl~~l~~~~p~~~~~~liG~D~l~~~~~W~~~~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (192)
T cd02165          79 SYTIDTLEELRERYPNAELYFIIGSDNLIRLPKWYDWEELLSLVHLVVAPRPGYPIEDASLEKLLLPGGRIILLDNPLLN  158 (192)
T ss_pred             CCHHHHHHHHHHhccCCCEEEEEcHHHhhhcccccCHHHHHHhCcEEEEeCCCCCcccchhhhhccCCCcEEEecCCccc
Confidence            455566766655552 33 788899964444445555555555555544441                          25


Q ss_pred             CCHHHHHHHHHhc
Q 016998          191 VSSTDIVGRILSS  203 (379)
Q Consensus       191 VSST~Ir~rI~~~  203 (379)
                      ||||+||+++.++
T Consensus       159 iSST~IR~~~~~g  171 (192)
T cd02165         159 ISSTEIRERLKNG  171 (192)
T ss_pred             cCHHHHHHHHHcC
Confidence            9999999999855

Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.

>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase

Probab=99.33  E-value=3.7e-12  Score=114.66  Aligned_cols=106  Identities=22%  Similarity=0.261  Sum_probs=79.6

Q ss_pred             EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHH-HHccCcC-c---eEeCCCCCc
Q 016998          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVD-E---VIIGAPWEV  333 (379)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v-~~~~~Vd-~---Vii~~~~~~  333 (379)
                      .++.|+|||||.||+.++++|++.+|.|+|+|.+++.  ..|.+ .|+ +.+||..++ ++++.++ .   ++..... .
T Consensus         2 gl~~G~FdP~H~GHl~ii~~a~~~~D~lii~i~s~~~--~~k~~-~p~-~~~eR~~mi~~al~~~~~~~~~~vP~~d~-~   76 (165)
T TIGR01527         2 GFYIGRFQPFHLGHLEVIKKIAEEVDELIIGIGSAQE--SHTLE-NPF-TAGERILMITQSLKEVGDLTYYIIPIEDI-E   76 (165)
T ss_pred             eEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCCC--CCCCC-CCC-CHHHHHHHHHHHHhcCCCceEEEEecCCc-c
Confidence            5789999999999999999999999999999998865  33432 345 779999999 7778874 3   2222222 3


Q ss_pred             hHHHHHHc------CCcEEEEcCCCCCCCCCCCCceEEEEee
Q 016998          334 TKDMITTF------NICLVVHGTVSETNTPLTVSLQFLYLPL  369 (379)
Q Consensus       334 ~~~~i~~~------~~d~vv~G~d~~~~~~l~~~~evv~lp~  369 (379)
                      ..+...++      ++|+|+.|.........+.|++|+++|.
T Consensus        77 ~~~~w~~~v~~~~p~~D~vf~~~~~~~~~f~e~g~~v~~~p~  118 (165)
T TIGR01527        77 RNSIWVSYVESMTPPFDVVYSNNPLVRRLFKEAGYEVKRPPM  118 (165)
T ss_pred             HHHHHHHHHHHhCCCCCEEEECCHHHHHHHHHcCCEEEECCC
Confidence            45566676      8999999954333345567999999993

In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.

>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT)

Probab=99.32  E-value=1.6e-12  Score=112.67  Aligned_cols=91  Identities=30%  Similarity=0.482  Sum_probs=74.2

Q ss_pred             EEcCccccCChHHHHHHHHHHhcCCE-EEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCc--------------
Q 016998          260 YIDGAFDLFHAGHVEILKKARQLGDF-LLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDE--------------  324 (379)
Q Consensus       260 ~~~G~FDl~H~GHi~~L~~A~~~gd~-liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~--------------  324 (379)
                      +++|+|||+|.||+.+|++|++.+|. +++++.+|....+.+   +++++.++|+.+++.+...+.              
T Consensus         1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k~~---~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~~~   77 (157)
T PF01467_consen    1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHKDK---KPIFSFEERLEMLRAAFKDDPNIEVDDWELEQDKK   77 (157)
T ss_dssp             EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHSTT---SSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSSHH
T ss_pred             CeeeEcCcccHHHHHHHHHHHHhccccccccccccccccccc---cccCcHHHHHHHHHHHHhhcCCccccchhHHhHhh
Confidence            57899999999999999999999997 788888887654322   489999999999999987777              


Q ss_pred             --------eEeCCC-------CCchHHHHHHcCCcEEEEcCCCC
Q 016998          325 --------VIIGAP-------WEVTKDMITTFNICLVVHGTVSE  353 (379)
Q Consensus       325 --------Vii~~~-------~~~~~~~i~~~~~d~vv~G~d~~  353 (379)
                              ++++++       |....++++.+++.++.|+.++.
T Consensus        78 ~~~~~~~~~v~g~D~~~~~~~~~~~~~~~~~~~~~v~~r~~~~~  121 (157)
T PF01467_consen   78 KYPDVKIYFVIGADNLRNFPKWRDWQEILKEVNIIVVSRGGDDP  121 (157)
T ss_dssp             HSTSSCEEEEEECTHHEEEEESTTHHHHHHHHHEEEEEHHHTTT
T ss_pred             hccccccceeccCCceeeecCCCcHHHHHHhCCEEEEEcCCCCc
Confidence                    788887       77788999999999999996654

Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....

>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=99.30  E-value=1.9e-11  Score=110.86  Aligned_cols=133  Identities=17%  Similarity=0.100  Sum_probs=89.3

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC-ccc--cEEEe-C------
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWV--DEVIA-N------  135 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~V--D~Vv~-~------  135 (379)
                      ++++..|+||++|.||..+++++ +..|++.+.+....   +.+ ++..+.++|++|++.+ +..  ..+.. +      
T Consensus         3 ~i~ifGGSFDP~H~GHl~ia~~~-~~~d~v~~vP~~~~---~~~-k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~~~~   77 (174)
T PRK08887          3 KIAVFGSAFNPPSLGHKSVIESL-SHFDLVLLVPSIAH---AWG-KTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQELY   77 (174)
T ss_pred             eEEEeCCCCCCCCHHHHHHHHHh-hcCCEEEEEECCCC---ccc-CCCCCHHHHHHHHHHHHhccCCCceEEehHHhhhc
Confidence            57899999999999999999996 45688887754421   112 3677999999999853 111  12221 1      


Q ss_pred             --CCccccHHHHHHHhhccC-cc-EEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 016998          136 --APYAITEQFMNRLFNEHK-ID-YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS  203 (379)
Q Consensus       136 --~p~~~t~efl~~ll~~~~-~d-~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~  203 (379)
                        .+..+|-+.++.+.+++. .+ ++++|.|--..-..+..++.+.+...+...++...||||+||+++..+
T Consensus        78 ~~~~~~yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~~~l~~~~~~~~ISST~IR~~l~~g  149 (174)
T PRK08887         78 APDESVTTYALLTRLQELYPEADLTFVIGPDNFLKFAKFYKADEITQRWTVMACPEKVPIRSTDIRNALQNG  149 (174)
T ss_pred             cCCCCcchHHHHHHHHHHCCCCeEEEEEccchHHHHHHhCCHHHHHhhCeEEEeCCCCCcCHHHHHHHHHcC
Confidence              122345566666655552 22 577799865444445556666666667777766789999999999854

>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase

Probab=99.25  E-value=6.4e-11  Score=108.91  Aligned_cols=131  Identities=21%  Similarity=0.203  Sum_probs=85.0

Q ss_pred             EecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCC-CCCCCHHHHHHHHhc-CccccEEEe------CCCcc
Q 016998           70 MDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVDEVIA------NAPYA  139 (379)
Q Consensus        70 ~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~-~~~VD~Vv~------~~p~~  139 (379)
                      .+|+||++|.||..++++|.+..  |++.+.+...+   ..|. +...+.++|++|++. +...+.+..      .....
T Consensus         2 ~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~---p~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~s   78 (193)
T TIGR00482         2 FGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANP---PHKKTYEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGPS   78 (193)
T ss_pred             ccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCC---CCCCCCCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCCC
Confidence            58999999999999999999975  66777665544   2343 455799999999983 333333322      12234


Q ss_pred             ccHHHHHHHhhccC-cc-EEEEcCCCCCCCCCchHHHHHHhCCeEEEeccC----------------------------C
Q 016998          140 ITEQFMNRLFNEHK-ID-YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT----------------------------E  189 (379)
Q Consensus       140 ~t~efl~~ll~~~~-~d-~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~----------------------------~  189 (379)
                      +|-+.++.+-+++. .+ ++++|.|--..-..+..++.+-+...+.+++|.                            .
T Consensus        79 yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~  158 (193)
T TIGR00482        79 YTIDTLKHLKKKYPDVELYFIIGADALRSFPLWKDWQELLELVHLVIVPRPGYTLDKALLEKAILRMHHGNLTLLHNPRV  158 (193)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEEcHHHhhhhccccCHHHHHHhCcEEEEeCCCCCcchhhhHHHHhcccCCcEEEEcCCcc
Confidence            55677766655552 23 788999954333344455555444444444331                            2


Q ss_pred             CCCHHHHHHHHHhc
Q 016998          190 GVSSTDIVGRILSS  203 (379)
Q Consensus       190 ~VSST~Ir~rI~~~  203 (379)
                      .||||+||+++.++
T Consensus       159 ~iSST~IR~~l~~g  172 (193)
T TIGR00482       159 PISSTEIRQRIRQG  172 (193)
T ss_pred             ccCHHHHHHHHHcC
Confidence            59999999999854

This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.

>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme

Probab=99.25  E-value=3.2e-11  Score=109.80  Aligned_cols=111  Identities=17%  Similarity=0.152  Sum_probs=82.3

Q ss_pred             EEEcCccccCChHHHHHHHHHHhcCC---EEEEEEecCcchhc---cCCCCCCCCCHHHHHHHHHHccCcCceEeCCCC-
Q 016998          259 VYIDGAFDLFHAGHVEILKKARQLGD---FLLVGIYTDQIVSE---HRGSYHPIMHLHERSLSVLACRYVDEVIIGAPW-  331 (379)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd---~liVgv~~D~~v~~---~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~-  331 (379)
                      |++-|+||.+|.||..+|++|+++++   ...|.++-|.....   .+....|+++.++|..+++++. ||.|++.+.. 
T Consensus         2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~-vd~v~~~~f~~   80 (180)
T cd02064           2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLG-VDYLLVLPFDK   80 (180)
T ss_pred             EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcC-CCEEEEeCCCH
Confidence            67889999999999999999999875   35666665654321   1222368999999999999998 9999985431 


Q ss_pred             ----CchHHHHHH----cCCcEEEEcCCCCCC-------C----C-CCCCceEEEEeee
Q 016998          332 ----EVTKDMITT----FNICLVVHGTVSETN-------T----P-LTVSLQFLYLPLI  370 (379)
Q Consensus       332 ----~~~~~~i~~----~~~d~vv~G~d~~~~-------~----~-l~~~~evv~lp~~  370 (379)
                          ....+|++.    .+++.+|.|.||...       +    . .+.+.+++.+|+.
T Consensus        81 ~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~FG~~~~g~~~~L~~~~~~~g~~v~~v~~~  139 (180)
T cd02064          81 EFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPV  139 (180)
T ss_pred             HHHcCCHHHHHHHHHhhcCCeEEEEccCCCCCCCCCCCHHHHHHhhhhcCcEEEEeCcE
Confidence                134555554    389999999998632       1    1 2347889999975

FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.

>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain

Probab=99.24  E-value=1.6e-11  Score=112.05  Aligned_cols=129  Identities=15%  Similarity=0.133  Sum_probs=81.2

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC-cc--cc--EEE-eCCC-cc-
Q 016998           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KW--VD--EVI-ANAP-YA-  139 (379)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~--VD--~Vv-~~~p-~~-  139 (379)
                      ++++|.||++|.||+.++++|.+.+++|+|++.+.+.. +.+ ++.++.+||++|++.. ..  +|  .+. ...| .. 
T Consensus         2 ~l~~GrF~P~H~GHl~~i~~a~~~~~~vii~i~s~~~~-~~~-~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D~~~   79 (181)
T cd02168           2 LVYIGRFQPFHNGHLAVVLIALEKAKKVIILIGSARTA-RNI-KNPWTSEEREVMIEAALSDAGADLARVHFRPLRDHLY   79 (181)
T ss_pred             eEEeeccCCCCHHHHHHHHHHHHHCCeEEEEeCCCCCC-CCC-CCCcCHHHHHHHHHHHHhccCCCcceEEEEecCCCCC
Confidence            57899999999999999999999999999998776432 222 3568999999999874 21  11  222 1111 11 


Q ss_pred             ccHHHH---HHHhh---ccCccEEEEcCCCCCCCCCchHHH-HHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 016998          140 ITEQFM---NRLFN---EHKIDYIIHGDDPCLLPDGTDAYA-LAKKVGRYKQIKRTEGVSSTDIVGRILSS  203 (379)
Q Consensus       140 ~t~efl---~~ll~---~~~~d~VV~GdD~~~g~~g~~~y~-~lk~~g~~~~v~r~~~VSST~Ir~rI~~~  203 (379)
                      .++-+.   +....   ..+++++++|.|...    ..-|. ...+.+ +..++..+.+|||.||++|..+
T Consensus        80 ~~~~W~~~v~~~v~~~~~~~~~i~~~g~~kd~----~~~~~~lfpe~~-~~~~p~~~~iSsT~IR~~i~~~  145 (181)
T cd02168          80 SDNLWLAEVQQQVLEIAGGSASVGLVGHRKDA----SSYYLRSFPQWD-YLEVPNYPDLNATDIRRAYFEG  145 (181)
T ss_pred             ChHHHHHHHHHhChHhhCCCCcEEEeCCccCC----CccceeecCCcC-eecCccccccCHHHHHHHHHhc
Confidence            122222   21111   225688999977621    11111 111222 3355555689999999999863

N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.

>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional

Probab=99.24  E-value=6.1e-11  Score=103.98  Aligned_cols=124  Identities=21%  Similarity=0.217  Sum_probs=80.4

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-CccccEEEeCCC-ccccH
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAP-YAITE  142 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~Vv~~~p-~~~t~  142 (379)
                      |+++++.|+||++|.||+.++++|.+++|+++|++..++    .| +++++.+||+++++. ++....|-.... -....
T Consensus         1 mkiai~~GSFDPih~GHl~ii~~A~~~~D~v~v~v~~np----~K-~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~~l~v   75 (140)
T PRK13964          1 MKIAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSINP----DK-SNASDLDSRFKNVKNKLKDFKNVEVLINENKLTA   75 (140)
T ss_pred             CeEEEEeeeeCCCCHHHHHHHHHHHHhCCEEEEEeccCC----CC-CCCCCHHHHHHHHHHHHcCCCCcEEecCcCCcHH
Confidence            357999999999999999999999999999999988664    34 478999999999964 222222222110 12333


Q ss_pred             HHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHH-----hCC---eEEE-ecc--CCCCCHHHHHHHHH
Q 016998          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK-----KVG---RYKQ-IKR--TEGVSSTDIVGRIL  201 (379)
Q Consensus       143 efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk-----~~g---~~~~-v~r--~~~VSST~Ir~rI~  201 (379)
                      +|.    ++.+++++|.|=.-..+.    .|+.-.     ...   +.+. ...  ...||||.||+...
T Consensus        76 ~~~----~~~~a~~ivrGlR~~~Df----eyE~~~a~~n~~l~~~ietvfl~~~~~~~~iSSs~vre~~~  137 (140)
T PRK13964         76 EIA----KKLGANFLIRSARNNIDF----QYEIVLAAGNKSLNNDLETILIIPDYDKIEYSSTLLRHKKF  137 (140)
T ss_pred             HHH----HHCCCeEEEEecCCCccH----HHHHHHHHHHHhhcCCCeEEEeecCCCCCEEeHHHHHHHHH
Confidence            554    467999999995431111    133211     111   1111 212  34699999998764

>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial

Probab=99.22  E-value=5.8e-11  Score=105.66  Aligned_cols=86  Identities=22%  Similarity=0.383  Sum_probs=72.7

Q ss_pred             EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cCcCceEeCCCCCchHH
Q 016998          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIGAPWEVTKD  336 (379)
Q Consensus       258 ~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~Vii~~~~~~~~~  336 (379)
                      +++++|+|||+|.||+.++++|++.+|.|+++++.+    ..|   .+..+.++|+.+++.+ +.-+.+.+...+..|.+
T Consensus         1 i~l~gGsFdP~H~GHl~l~~~a~~~~d~v~~~~~~~----p~k---~~~~~~~~R~~m~~~a~~~~~~~~v~~~e~yt~d   73 (155)
T TIGR01510         1 IALYPGSFDPVTNGHLDIIKRAAALFDEVIVAVAKN----PSK---KPLFSLEERVELIKDATKHLPNVRVDVFDGLLVD   73 (155)
T ss_pred             CEEEEeecCCCcHHHHHHHHHHHHhCCEEEEEEcCC----CCC---CCCcCHHHHHHHHHHHHhhCCCeEEcCccchHHH
Confidence            478999999999999999999999999999999744    334   3788999999999665 55566677666678999


Q ss_pred             HHHHcCCcEEEEcC
Q 016998          337 MITTFNICLVVHGT  350 (379)
Q Consensus       337 ~i~~~~~d~vv~G~  350 (379)
                      .++.++.+++++|-
T Consensus        74 t~~~l~~~~~i~G~   87 (155)
T TIGR01510        74 YAKELGATFIVRGL   87 (155)
T ss_pred             HHHHcCCCEEEecC
Confidence            99999999999994

This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.

>COG1019 Predicted nucleotidyltransferase [General function prediction only]

Probab=99.22  E-value=5.2e-11  Score=104.23  Aligned_cols=127  Identities=26%  Similarity=0.285  Sum_probs=89.2

Q ss_pred             CCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc----Ccccc--EEEeCC
Q 016998           63 KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG----LKWVD--EVIANA  136 (379)
Q Consensus        63 ~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~----~~~VD--~Vv~~~  136 (379)
                      .++..|.+.|+||.+|.||..||+.|..+|+.+++|++||+.+..+|..++.+++.|++-|..    ++.-.  .+-.+.
T Consensus         3 ~kfm~vavGGTFd~LH~GHk~LL~~A~~~G~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~~fl~~~~~~~~~iv~i~D   82 (158)
T COG1019           3 IKFMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRNFLESIKADYEEIVPIDD   82 (158)
T ss_pred             ccceEEEecccchhhhhhHHHHHHHHHHhCCeEEEEEccHHHHHHhccccCCcHHHHHHHHHHHHHHhcCCcceEEEecC
Confidence            456779999999999999999999999999999999999998876666899999999998874    22111  334567


Q ss_pred             CccccHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHH-hCC----eEEEecc-----CCCCCHHHHHHH
Q 016998          137 PYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK-KVG----RYKQIKR-----TEGVSSTDIVGR  199 (379)
Q Consensus       137 p~~~t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk-~~g----~~~~v~r-----~~~VSST~Ir~r  199 (379)
                      ||..+.+       .-..+++|+...-.-++   -..+..+ +.|    +++.++.     ...+|||+||.-
T Consensus        83 p~G~t~~-------~~~~e~iVVS~ET~~~A---l~IN~~R~~~Gl~pL~I~~i~~v~aedg~~iSSTrIrrg  145 (158)
T COG1019          83 PYGPTVE-------DPDFEAIVVSPETYPGA---LKINEIREKRGLPPLEIIVIDYVLAEDGKPISSTRIRRG  145 (158)
T ss_pred             CCCCCCC-------cCceeEEEEccccchhH---HHHHHHHHHCCCCCeEEEEEehhhhhcCCccchhhhhhh
Confidence            7765532       12468889886643322   1222222 334    2334443     346999999954

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.22  E-value=4.5e-11  Score=119.22  Aligned_cols=135  Identities=16%  Similarity=0.187  Sum_probs=87.6

Q ss_pred             CCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC-cccc--EEE-eCCCc
Q 016998           63 KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVD--EVI-ANAPY  138 (379)
Q Consensus        63 ~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~VD--~Vv-~~~p~  138 (379)
                      .+.++++++|.||++|.||..++++|.+.+|+|+|++.+.... ..+ +..++.+||++|++.. +.++  .+. ...|-
T Consensus         4 ~~~~~~~~~G~F~P~H~GHl~~i~~a~~~~d~l~v~i~s~~~~-~~~-~~~~~~~~R~~mi~~~~~~~~~~r~~~~pi~d   81 (340)
T PRK05379          4 RRYDYLVFIGRFQPFHNGHLAVIREALSRAKKVIVLIGSADLA-RSI-KNPFSFEERAQMIRAALAGIDLARVTIRPLRD   81 (340)
T ss_pred             ccceEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEEccCCCC-CcC-CCCCCHHHHHHHHHHHhhcCCCceEEEEECCC
Confidence            3466899999999999999999999999999999999765422 122 3458999999999864 3222  222 21121


Q ss_pred             c-cc-H---HHHHHHhh---ccCccEEEEcCCCCCCCCCchHHHHH-HhCCeEEEeccCCCCCHHHHHHHHHhcc
Q 016998          139 A-IT-E---QFMNRLFN---EHKIDYIIHGDDPCLLPDGTDAYALA-KKVGRYKQIKRTEGVSSTDIVGRILSSM  204 (379)
Q Consensus       139 ~-~t-~---efl~~ll~---~~~~d~VV~GdD~~~g~~g~~~y~~l-k~~g~~~~v~r~~~VSST~Ir~rI~~~~  204 (379)
                      . ++ .   ..++....   ..++|++++|+|..    +..-|..+ .+.|.. .++..+++|+|.||++|..+-
T Consensus        82 ~~~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~----~~~~~~~~f~~~~~~-~~~~~~~~s~T~iR~~~~~~~  151 (340)
T PRK05379         82 SLYNDSLWLAEVQAAVAEHAGADARIGLIGHEKD----ASSYYLRSFPQWELV-DVPNTEDLSATEIRDAYFEGR  151 (340)
T ss_pred             CCcChHHHHHHHHHHHHhccCCCCcEEEECCcCC----CChHHHHhccccccc-cCCcccccCccHHHHHHHcCC
Confidence            1 12 2   22222221   25789999998872    12222222 233333 555668899999999998653

>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional

Probab=99.22  E-value=2.3e-10  Score=103.97  Aligned_cols=127  Identities=20%  Similarity=0.318  Sum_probs=81.5

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC-c--cc--cEE-EeCCC-cc
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-K--WV--DEV-IANAP-YA  139 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~--~V--D~V-v~~~p-~~  139 (379)
                      +++++|.||++|.||+.++++|.+.+|+|++++.+...  ..+....++.+||++|++.. .  .+  +.+ +...| ..
T Consensus         2 ~gl~~G~F~P~H~GHl~~i~~a~~~~d~v~v~i~s~~~--~~~~~~p~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D~~   79 (174)
T PRK01153          2 RALFIGRFQPFHKGHLEVIKWILEEVDELIIGIGSAQE--SHTLKNPFTAGERILMIRKALEEEGIDLSRYYIIPIPDIE   79 (174)
T ss_pred             EEEEeeccCCCCHHHHHHHHHHHHhCCEEEEEecCCCC--CCCCCCCCCHHHHHHHHHHHHhcCCCCcceeeEecCCCcc
Confidence            58999999999999999999999999999998865431  12223457889999999843 1  12  122 22222 22


Q ss_pred             ccHHHHHHHhhc-cCccEEEEcCCCCCCCCCchHHHHHHhCC-eEEEec--cCCCCCHHHHHHHHHhc
Q 016998          140 ITEQFMNRLFNE-HKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIK--RTEGVSSTDIVGRILSS  203 (379)
Q Consensus       140 ~t~efl~~ll~~-~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-~~~~v~--r~~~VSST~Ir~rI~~~  203 (379)
                      ..+.+...+... ..+|.++.|+.+        .....+..| ++...+  +...+|+|+||++|.++
T Consensus        80 ~~~~w~~~v~~~~~~~d~v~~~~~y--------~~~~f~~~g~~v~~~p~~~~~~iSsT~IR~~i~~g  139 (174)
T PRK01153         80 FNSIWVSHVESYTPPFDVVYTGNPL--------VARLFREAGYEVRQPPMFNREEYSGTEIRRRMIEG  139 (174)
T ss_pred             hHHHHHHHHHHhCCCCCEEEECChH--------HHHhchhhCCeEecCCccccCCCCHHHHHHHHHcC
Confidence            333344433222 257889999532        122223444 344444  34689999999999754

>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated

Probab=99.20  E-value=1.1e-10  Score=116.54  Aligned_cols=135  Identities=21%  Similarity=0.114  Sum_probs=93.9

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHc--CCeEEEEEccchhhhccCC-CCCCCHHHHHHHHhcC-ccccEEEe------
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKG-PPVLSMEERLALVSGL-KWVDEVIA------  134 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~--~d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~~-~~VD~Vv~------  134 (379)
                      |++++++|+||++|.||..++++|.+.  .|++.+.+...+   +.|. .+..+.++|++|++.. +..+.+..      
T Consensus         1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~---p~K~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~   77 (342)
T PRK07152          1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYIN---PFKKKQKASNGEHRLNMLKLALKNLPKMEVSDFEIK   77 (342)
T ss_pred             CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCC---CCCCCCCCCCHHHHHHHHHHHHhhCCCeEEeHHHHh
Confidence            457899999999999999999999986  377877665543   3344 3455569999999742 22222221      


Q ss_pred             CCCccccHHHHHHHhhccCcc---EEEEcCCCCCCCCCchHHHHHHhCCeEEEeccC--------------------CCC
Q 016998          135 NAPYAITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT--------------------EGV  191 (379)
Q Consensus       135 ~~p~~~t~efl~~ll~~~~~d---~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~--------------------~~V  191 (379)
                      .....+|-+.++.+.+++ |+   ++++|.|.-..-..+..++.+-+...+.+++|.                    ..|
T Consensus        78 ~~~~syt~~tl~~l~~~~-p~~~~~~iiG~D~~~~l~~W~~~~~l~~~~~~iv~~R~g~~~~~~~~~~~i~~~~~~~~~i  156 (342)
T PRK07152         78 RQNVSYTIDTIKYFKKKY-PNDEIYFIIGSDNLEKFKKWKNIEEILKKVQIVVFKRKKNINKKNLKKYNVLLLKNKNLNI  156 (342)
T ss_pred             CCCCCcHHHHHHHHHHhC-CCCcEEEEecHHHhhhcccccCHHHHHHhCCEEEEECCCCCcccccccCcEEEecCCcccc
Confidence            122344556666555555 33   889999976555567777777777777777662                    249


Q ss_pred             CHHHHHHHHHhc
Q 016998          192 SSTDIVGRILSS  203 (379)
Q Consensus       192 SST~Ir~rI~~~  203 (379)
                      |||+||+++..+
T Consensus       157 SST~IR~~~~~~  168 (342)
T PRK07152        157 SSTKIRKGNLLG  168 (342)
T ss_pred             CHHHHHHHHHcC
Confidence            999999999865

>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal

Probab=99.20  E-value=5.5e-11  Score=106.79  Aligned_cols=107  Identities=20%  Similarity=0.198  Sum_probs=79.5

Q ss_pred             EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcC----ceEe--CCCC
Q 016998          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVD----EVII--GAPW  331 (379)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd----~Vii--~~~~  331 (379)
                      .++.|+|||||.||+.++++|++.+|.|+|+|.++....  +.  .+-++.+||..+++ +++.+|    .|.+  ....
T Consensus         2 ~v~~G~FdP~H~GHl~~i~~a~~~~d~l~v~v~s~~~~~--~~--~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d~   77 (163)
T cd02166           2 ALFIGRFQPFHLGHLKVIKWILEEVDELIIGIGSAQESH--TL--ENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPDI   77 (163)
T ss_pred             eEEeeccCCCCHHHHHHHHHHHHHCCEEEEEecCCCCCC--CC--CCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCCC
Confidence            578999999999999999999999999999998775432  22  23468899999997 668875    3333  2222


Q ss_pred             CchHHHHHHc------CCcEEEEcCCCCCCCCCCCCceEEEEeee
Q 016998          332 EVTKDMITTF------NICLVVHGTVSETNTPLTVSLQFLYLPLI  370 (379)
Q Consensus       332 ~~~~~~i~~~------~~d~vv~G~d~~~~~~l~~~~evv~lp~~  370 (379)
                      . ..+...++      +.|+++-|.++......+.+++++.+|++
T Consensus        78 ~-~~~~w~~~v~~~vp~~div~~g~~~~~~~f~~~g~~v~~~p~~  121 (163)
T cd02166          78 E-RNSLWVSYVESLTPPFDVVYSGNPLVARLFKEAGYEVRRPPMF  121 (163)
T ss_pred             C-chHHHHHHHHHHCCCCCEEEECchHHHHhhhhcCCeEecCCcc
Confidence            2 23444444      78999999765554555678999999985

This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.

>cd02156 nt_trans nucleotidyl transferase superfamily

Probab=99.18  E-value=2.2e-11  Score=101.13  Aligned_cols=85  Identities=25%  Similarity=0.284  Sum_probs=70.9

Q ss_pred             EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchHHH
Q 016998          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDM  337 (379)
Q Consensus       258 ~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~~~  337 (379)
                      ++++.|+||++|.||+.++++|++++|.+++++.++....   .+ .++.++++|...++++                  
T Consensus         1 ~~~~~G~Fdp~H~GH~~l~~~a~~~~d~~i~~i~~~~~~~---~~-~~~~~~~~R~~~l~~~------------------   58 (105)
T cd02156           1 KARFPGEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVK---VW-QDPHELEERKESIEED------------------   58 (105)
T ss_pred             CEEeCCCCCCCCHHHHHHHHHHHHhCCcEEEEEcCCCccc---cc-CChHHHHHHHHHHHHH------------------
Confidence            3788999999999999999999999999999999886543   22 3689999999999988                  


Q ss_pred             HHHcCCcEEEEcCCCCCC----------CCCCCCceEEEEeeec
Q 016998          338 ITTFNICLVVHGTVSETN----------TPLTVSLQFLYLPLIN  371 (379)
Q Consensus       338 i~~~~~d~vv~G~d~~~~----------~~l~~~~evv~lp~~~  371 (379)
                             ++++|.+|..+          ..+..++|++++|+.+
T Consensus        59 -------~~~~G~~~~~~~~~e~~~~~n~~l~~~~e~v~~~~~~   95 (105)
T cd02156          59 -------ISVCGEDFQQNRELYRWVKDNITLPVDPEQVELPRLN   95 (105)
T ss_pred             -------HHHHHhhhhhchhHHHHHHHhcCCCCCCeEEEccccc
Confidence                   77888766543          2466789999999966

nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.

>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins

Probab=99.16  E-value=3.5e-10  Score=101.12  Aligned_cols=127  Identities=20%  Similarity=0.236  Sum_probs=80.2

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC-ccccEE-E-----eCCCccc
Q 016998           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVDEV-I-----ANAPYAI  140 (379)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~VD~V-v-----~~~p~~~  140 (379)
                      ++++|+||++|.||+.++++|.+.+|+|+|++.+.+.. + ..+..++.++|++|++.. ...+.+ +     .+.|+..
T Consensus         2 gl~~G~F~P~H~GHl~li~~a~~~~d~v~vi~~~~~~~-~-~~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d~~~~~   79 (158)
T cd02167           2 GIVFGKFAPLHTGHVYLIYKALSQVDELLIIVGSDDTR-D-DARTGLPLEKRLRWLREIFPDQENIVVHTLNEPDIPEYP   79 (158)
T ss_pred             EEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCcc-c-ccCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCCc
Confidence            57899999999999999999999999999999887632 1 125678999999999853 221112 1     1223211


Q ss_pred             --cH---HHHHHHhhc---cCccEEEEcCCCCCCCCCchHHHHHHhCC-eEEEe--cc-CCCCCHHHHHHHHH
Q 016998          141 --TE---QFMNRLFNE---HKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQI--KR-TEGVSSTDIVGRIL  201 (379)
Q Consensus       141 --t~---efl~~ll~~---~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-~~~~v--~r-~~~VSST~Ir~rI~  201 (379)
                        -.   ..++..+.+   .++|.++.|+++.     ...+......| +...+  .+ ...+|+|.||+-..
T Consensus        80 ~~w~~w~~~v~~~v~~~~~~~~~~vf~~~~~~-----~~~~~~~~~~~~~~~~v~~~r~~~~iSaT~IR~~p~  147 (158)
T cd02167          80 NGWDIWSNRVKTLIAENTRCRPDIVFTAEEYE-----AAFELVLAYLGAQVVLVDPDRTDISVSATQIRENPF  147 (158)
T ss_pred             hhHHHHHHHHHHHHhhhcCCCCCEEEEccCcc-----hhhhhHhhcCCCeEEEeccccccCCcCHHHHHhCHH
Confidence              11   223333332   1688999998762     11211123333 33332  23 45799999998654

NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase

>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes

Probab=99.03  E-value=4.6e-10  Score=98.82  Aligned_cols=109  Identities=23%  Similarity=0.352  Sum_probs=77.0

Q ss_pred             EEEcCccccCChHHHHHHHHHHhcC-CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cCc------CceEeCCC
Q 016998          259 VYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYV------DEVIIGAP  330 (379)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~g-d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~V------d~Vii~~~  330 (379)
                      |++.|+||++|.||..+|++|.+++ |.++||+++|+.... |....+++++++|+.+++.+ ...      +-+-+.+|
T Consensus         2 v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~~~-k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~d~   80 (143)
T cd02164           2 VAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLKN-KSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPIDDP   80 (143)
T ss_pred             EEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhccc-CCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccCC
Confidence            7899999999999999999999998 899999999985433 32224699999999888766 222      23344677


Q ss_pred             CCchHHHHHHcCCcEEEEcCCCCCC----------CCCCCCceEEEEeeecc
Q 016998          331 WEVTKDMITTFNICLVVHGTVSETN----------TPLTVSLQFLYLPLINY  372 (379)
Q Consensus       331 ~~~~~~~i~~~~~d~vv~G~d~~~~----------~~l~~~~evv~lp~~~~  372 (379)
                      ++.+..   .-++|.+|-..+....          .-+ .-++++..|+..+
T Consensus        81 ~Gpt~~---~~~~d~lVVS~ET~~~~~~iN~~R~~~gl-~pl~i~~v~~v~~  128 (143)
T cd02164          81 YGPTGT---DPDLEAIVVSPETYPGALKINRKREENGL-SPLEIVVVPLVKA  128 (143)
T ss_pred             CCCccc---CCCCCEEEEcHHHhhhHHHHHHHHHHCCC-CceeEEEEEeecc
Confidence            776532   3568888877553322          112 3567777776643

The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.

>PRK13670 hypothetical protein; Provisional

Probab=99.02  E-value=8.7e-10  Score=111.73  Aligned_cols=94  Identities=20%  Similarity=0.327  Sum_probs=73.6

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCC-eEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCcccc---
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALGD-ELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAIT---  141 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d-~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t---  141 (379)
                      +.+=++-=|||+|.||+.+|++|++.+. .++++|.|-..+.+ ..+.+++.++|.+++..+ +||.|++ .||.+.   
T Consensus         2 k~~GIIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qr-g~p~i~~~~~R~~~a~~~-GvD~vie-lpf~~a~~s   78 (388)
T PRK13670          2 KVTGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQR-GEPAIVDKWTRAKMALEN-GVDLVVE-LPFLYSVQS   78 (388)
T ss_pred             ceeEEEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCC-CCCCCCCHHHHHHHHHHc-CCCEEEE-eCCchHhCC
Confidence            3455566699999999999999999763 34555555554433 226699999999999997 9999998 666554   


Q ss_pred             -HHHHHH---HhhccCccEEEEcCC
Q 016998          142 -EQFMNR---LFNEHKIDYIIHGDD  162 (379)
Q Consensus       142 -~efl~~---ll~~~~~d~VV~GdD  162 (379)
                       ++|++.   ++.+++++++|+|.|
T Consensus        79 ae~F~~~aV~iL~~l~v~~lv~G~e  103 (388)
T PRK13670         79 ADFFAEGAVSILDALGVDSLVFGSE  103 (388)
T ss_pred             HHHHHHhHHHHHHHcCCCEEEEcCC
Confidence             479887   778899999999999

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=99.02  E-value=4.4e-09  Score=107.13  Aligned_cols=130  Identities=18%  Similarity=0.233  Sum_probs=84.1

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhh-----hccCCCCCCCHHHHHHHHhcC-ccccEEE-e---
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI-----IANKGPPVLSMEERLALVSGL-KWVDEVI-A---  134 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i-----~~~K~~pi~t~eER~~~l~~~-~~VD~Vv-~---  134 (379)
                      .++++++|.|||+|.||+.+|++|.+++|+|+|+|.+++.-     ...|.+..++.++|.++++.. +..+.|. .   
T Consensus        52 ~~~~v~~G~FdP~H~GH~~lI~~A~~~~d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v~v~~~~  131 (399)
T PRK08099         52 KKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIKIHAFN  131 (399)
T ss_pred             CcEEEEEEecCCCCHHHHHHHHHHHHHCCeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCEEEEecC
Confidence            35799999999999999999999999999999988877631     111225688999999999864 2322121 1   


Q ss_pred             --CCC-cccc-H---HHHHHHhhc--cCccEEEEcCCCCCCCCCchHHHHHHhCC-eEEEec--c-CCCCCHHHHHHHHH
Q 016998          135 --NAP-YAIT-E---QFMNRLFNE--HKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIK--R-TEGVSSTDIVGRIL  201 (379)
Q Consensus       135 --~~p-~~~t-~---efl~~ll~~--~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-~~~~v~--r-~~~VSST~Ir~rI~  201 (379)
                        +.| +... .   +-++..+.+  .++++++.|.++     +...|  ++..| +...++  | ..+||+|.||+--.
T Consensus       132 ~~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~~-----d~~~~--~~~~~~~~~~vd~~r~~~~iSaT~IR~~p~  204 (399)
T PRK08099        132 EEGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEEQ-----DAPQY--EEHLGIETVLVDPKRTFMNISGTQIRENPF  204 (399)
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCCC-----ChHHH--HHhcCCceeeeccccccCCcCHHHHhhCHH
Confidence              112 2111 1   223333332  268999999776     12334  34333 344343  3 35799999998654

>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]

Probab=99.00  E-value=1.5e-09  Score=95.74  Aligned_cols=125  Identities=22%  Similarity=0.280  Sum_probs=83.4

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC-ccccEEEeCCCccccHH
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVDEVIANAPYAITEQ  143 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~VD~Vv~~~p~~~t~e  143 (379)
                      +++++..|+||+++.||+.+|++|.++.|+++|+|..++    .| +|+++.+||.++++.. +..+.|-.. .+  + .
T Consensus         2 ~~iavypGSFDPiTnGHlDii~RA~~~Fd~viVaV~~np----~K-~plFsleER~~l~~~~~~~l~nV~V~-~f--~-~   72 (159)
T COG0669           2 MKIAVYPGSFDPITNGHLDIIKRASALFDEVIVAVAINP----SK-KPLFSLEERVELIREATKHLPNVEVV-GF--S-G   72 (159)
T ss_pred             CeeEEeCCCCCCCccchHHHHHHHHHhccEEEEEEEeCC----Cc-CCCcCHHHHHHHHHHHhcCCCceEEE-ec--c-c
Confidence            568999999999999999999999999999999998765    34 7999999999999853 222222221 11  1 2


Q ss_pred             HHHHHhhccCccEEEEcCCCCCCCCCchH-HHHHHh-----C-Ce---EEEeccC--CCCCHHHHHHHHHhc
Q 016998          144 FMNRLFNEHKIDYIIHGDDPCLLPDGTDA-YALAKK-----V-GR---YKQIKRT--EGVSSTDIVGRILSS  203 (379)
Q Consensus       144 fl~~ll~~~~~d~VV~GdD~~~g~~g~~~-y~~lk~-----~-g~---~~~v~r~--~~VSST~Ir~rI~~~  203 (379)
                      ++-++.++.++..+|-|=-     ...|- |+.--.     . .+   +...+..  .-||||-+|+-..-+
T Consensus        73 Llvd~ak~~~a~~ivRGLR-----~~sDfeYE~qma~~N~~L~~eveTvFl~~s~~~~~iSSs~Vreia~~g  139 (159)
T COG0669          73 LLVDYAKKLGATVLVRGLR-----AVSDFEYELQMAHMNRKLAPEVETVFLMPSPEYSFISSSLVREIAAFG  139 (159)
T ss_pred             HHHHHHHHcCCCEEEEecc-----ccchHHHHHHHHHHHHhhcccccEEEecCCcceehhhHHHHHHHHHhC
Confidence            4444446789999999932     22221 332111     1 11   2222222  359999999876643

>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed

Probab=98.99  E-value=2e-09  Score=105.83  Aligned_cols=112  Identities=20%  Similarity=0.175  Sum_probs=83.3

Q ss_pred             EEEEcCccccCChHHHHHHHHHHhcCCEE---EEEEecCcchhcc---CCCCCCCCCHHHHHHHHHHccCcCceEeCCCC
Q 016998          258 VVYIDGAFDLFHAGHVEILKKARQLGDFL---LVGIYTDQIVSEH---RGSYHPIMHLHERSLSVLACRYVDEVIIGAPW  331 (379)
Q Consensus       258 ~v~~~G~FDl~H~GHi~~L~~A~~~gd~l---iVgv~~D~~v~~~---Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~  331 (379)
                      .|++-|.||.+|.||..+|++|+++++.+   .+.++-|......   +....++++.+||...+++|. ||.+++.+..
T Consensus        15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~g-VD~~~~~~F~   93 (305)
T PRK05627         15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAELG-VDYVLVLPFD   93 (305)
T ss_pred             EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHcC-CCEEEEecCC
Confidence            79999999999999999999999998754   3455555433321   222368999999999999998 9999984421


Q ss_pred             -----CchHHHHHH-----cCCcEEEEcCCCCCC-------CC-----CCCCceEEEEeee
Q 016998          332 -----EVTKDMITT-----FNICLVVHGTVSETN-------TP-----LTVSLQFLYLPLI  370 (379)
Q Consensus       332 -----~~~~~~i~~-----~~~d~vv~G~d~~~~-------~~-----l~~~~evv~lp~~  370 (379)
                           ....+|+++     ++++.+|.|.||-..       +.     ...+.+++.+|..
T Consensus        94 ~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~v~~~  154 (305)
T PRK05627         94 EEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEV  154 (305)
T ss_pred             HHHhcCCHHHHHHHHHHhccCCCEEEECCCCCCCCCCCCCHHHHHHHHHHcCcEEEEeccE
Confidence                 145677764     899999999998632       11     1236888888764

>COG1019 Predicted nucleotidyltransferase [General function prediction only]

Probab=98.98  E-value=7.5e-10  Score=97.02  Aligned_cols=113  Identities=19%  Similarity=0.268  Sum_probs=82.1

Q ss_pred             CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc----cC-cC-ceEeC
Q 016998          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC----RY-VD-EVIIG  328 (379)
Q Consensus       255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~----~~-Vd-~Vii~  328 (379)
                      ...+|.+.|+||.+|.||..||+.|...|+.+++|++||+.+.++|.  +++.|++.|...|...    +. -+ -|-+.
T Consensus         4 kfm~vavGGTFd~LH~GHk~LL~~A~~~G~~v~IGlTsDe~~k~~k~--~~i~p~~~R~~~l~~fl~~~~~~~~~iv~i~   81 (158)
T COG1019           4 KFMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKK--EKIEPYEVRLRNLRNFLESIKADYEEIVPID   81 (158)
T ss_pred             cceEEEecccchhhhhhHHHHHHHHHHhCCeEEEEEccHHHHHHhcc--ccCCcHHHHHHHHHHHHHHhcCCcceEEEec
Confidence            35789999999999999999999999999999999999999988654  6999999999776543    21 11 34457


Q ss_pred             CCCCchHHHHHHcCCcEEEEcCCCCCC---------CCCCCCceEEEEeeecc
Q 016998          329 APWEVTKDMITTFNICLVVHGTVSETN---------TPLTVSLQFLYLPLINY  372 (379)
Q Consensus       329 ~~~~~~~~~i~~~~~d~vv~G~d~~~~---------~~l~~~~evv~lp~~~~  372 (379)
                      +|++.+.   +.-..|++|...+....         +.=-+-++++.+|+..+
T Consensus        82 Dp~G~t~---~~~~~e~iVVS~ET~~~Al~IN~~R~~~Gl~pL~I~~i~~v~a  131 (158)
T COG1019          82 DPYGPTV---EDPDFEAIVVSPETYPGALKINEIREKRGLPPLEIIVIDYVLA  131 (158)
T ss_pred             CCCCCCC---CcCceeEEEEccccchhHHHHHHHHHHCCCCCeEEEEEehhhh
Confidence            7777653   23356777766543322         11113477888877643

>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins

Probab=98.91  E-value=1.1e-08  Score=91.54  Aligned_cols=105  Identities=19%  Similarity=0.182  Sum_probs=73.0

Q ss_pred             EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cCcCceEeC---CCCCc-
Q 016998          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIG---APWEV-  333 (379)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~Vii~---~~~~~-  333 (379)
                      .++.|+|||+|.||+.++++|.+.+|.|+|.+.++..   .|.+ ++.++.++|..+++.. +.-+.+.+.   .+... 
T Consensus         2 gl~~G~F~P~H~GHl~li~~a~~~~d~v~vi~~~~~~---~~~~-~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d~~~   77 (158)
T cd02167           2 GIVFGKFAPLHTGHVYLIYKALSQVDELLIIVGSDDT---RDDA-RTGLPLEKRLRWLREIFPDQENIVVHTLNEPDIPE   77 (158)
T ss_pred             EEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCc---cccc-CCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCC
Confidence            5789999999999999999999999999999998853   2322 4567999999888544 664555441   11111 


Q ss_pred             --------h---HHHHHHc---CCcEEEEcCCCCCCC---CCCCCceEEEE
Q 016998          334 --------T---KDMITTF---NICLVVHGTVSETNT---PLTVSLQFLYL  367 (379)
Q Consensus       334 --------~---~~~i~~~---~~d~vv~G~d~~~~~---~l~~~~evv~l  367 (379)
                              .   ...+.+.   ++|+++-|.+.....   ....+.+++..
T Consensus        78 ~~~~w~~w~~~v~~~v~~~~~~~~~~vf~~~~~~~~~~~~~~~~~~~~~~v  128 (158)
T cd02167          78 YPNGWDIWSNRVKTLIAENTRCRPDIVFTAEEYEAAFELVLAYLGAQVVLV  128 (158)
T ss_pred             CchhHHHHHHHHHHHHhhhcCCCCCEEEEccCcchhhhhHhhcCCCeEEEe
Confidence                    1   2333322   789999997765443   24457788775

NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase

>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic

Probab=98.87  E-value=1.5e-08  Score=95.67  Aligned_cols=84  Identities=17%  Similarity=0.140  Sum_probs=50.3

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCC--e-E-EE-EE-ccchhhhccCCCCCCCHHHHHHHHhc-CccccEEE------
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALGD--E-L-VV-GV-VSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVI------  133 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d--~-L-iV-gV-~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~Vv------  133 (379)
                      ..+..|+||++|.||+.++++|.+..+  . + ++ ++ .+.. ....| ....+.++|++|++. +.....+.      
T Consensus         2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~-~~~~k-~~~~~~~~Rl~Ml~lai~~~~~~~v~~~E~   79 (225)
T cd09286           2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVN-DAYGK-KGLASAKHRVAMCRLAVQSSDWIRVDDWES   79 (225)
T ss_pred             EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeec-cCCCC-CCCCCHHHHHHHHHHHHccCCCEEEEehhc
Confidence            357889999999999999999988753  2 1 22 11 1211 11123 567899999999983 22222222      


Q ss_pred             eCCCccccHHHHHHHhhcc
Q 016998          134 ANAPYAITEQFMNRLFNEH  152 (379)
Q Consensus       134 ~~~p~~~t~efl~~ll~~~  152 (379)
                      ....+.+|-+.++.+.+++
T Consensus        80 ~~~~~syT~~TL~~l~~~~   98 (225)
T cd09286          80 LQPEWMRTAKVLRHHREEI   98 (225)
T ss_pred             cCCccccHHHHHHHHHHHh
Confidence            2222334556666655555

Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.

>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase

Probab=98.86  E-value=2.3e-08  Score=95.03  Aligned_cols=96  Identities=18%  Similarity=0.169  Sum_probs=57.6

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcC--CeE-EE--EEccchhhhccCCCCCCCHHHHHHHHh-cCccccE------EE
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALG--DEL-VV--GVVSDEEIIANKGPPVLSMEERLALVS-GLKWVDE------VI  133 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~L-iV--gV~sd~~i~~~K~~pi~t~eER~~~l~-~~~~VD~------Vv  133 (379)
                      ...+.+|+||++|.||+.+++.|++.-  +.+ +|  .+.+.. ....| ....+.++|++|++ ++.....      -+
T Consensus        23 ~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~-~~~~k-~~~~~~~~Rl~Ml~lai~~~~~~~V~~~E~  100 (236)
T PLN02945         23 VVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVN-DAYKK-KGLASAEHRIQMCQLACEDSDFIMVDPWEA  100 (236)
T ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCC-ccccc-CCCCCHHHHHHHHHHHhcCCCCeEecHHHh
Confidence            345777899999999999999888864  332 23  233211 11122 35779999999997 2222221      12


Q ss_pred             eCCCccccHHHHHHHhhccC-------c--c-EEEEcCCC
Q 016998          134 ANAPYAITEQFMNRLFNEHK-------I--D-YIIHGDDP  163 (379)
Q Consensus       134 ~~~p~~~t~efl~~ll~~~~-------~--d-~VV~GdD~  163 (379)
                      ....+..|-+.++.+.++++       +  + ++++|.|.
T Consensus       101 ~~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D~  140 (236)
T PLN02945        101 RQSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSDL  140 (236)
T ss_pred             CCCCCccHHHHHHHHHHHhccccccCCCCceEEEEechhH
Confidence            22223445566665555552       2  3 78999993

>cd00560 PanC Pantoate-beta-alanine ligase

Probab=98.82  E-value=4.4e-09  Score=102.02  Aligned_cols=113  Identities=20%  Similarity=0.257  Sum_probs=87.0

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhcc-CC--CCCCCHHHHHHHHhcCccccEEEeCCCcccc
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KG--PPVLSMEERLALVSGLKWVDEVIANAPYAIT  141 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~-K~--~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t  141 (379)
                      --.|.|.|.   +|.||+.||++|++.++.++|.+..+|.-... ..  +.+.+.++|.++++.. +||.++.....++.
T Consensus        24 ig~V~TmG~---LH~GH~~LI~~a~~~a~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~-GvD~vF~p~~~~m~   99 (277)
T cd00560          24 IGFVPTMGA---LHEGHLSLVRRARAENDVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA-GVDLLFAPSVEEMY   99 (277)
T ss_pred             EEEEECCCc---ccHHHHHHHHHHHHhCCEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC-CCCEEECCCHHHcC
Confidence            345779999   99999999999999999999999888764221 22  4588899999999997 89998642222222


Q ss_pred             -HHHHHHHhhccCccEEEEcC----------------------C-CCCCCCCchHHHHHHhCCe
Q 016998          142 -EQFMNRLFNEHKIDYIIHGD----------------------D-PCLLPDGTDAYALAKKVGR  181 (379)
Q Consensus       142 -~efl~~ll~~~~~d~VV~Gd----------------------D-~~~g~~g~~~y~~lk~~g~  181 (379)
                       ++|+..+.+..++..+++|.                      | ++||.++.+....+++.++
T Consensus       100 p~~f~~~~v~~~~~~~il~G~~RpghF~GV~tvv~kLf~iv~Pd~~~FG~kd~gq~~~Lk~~~~  163 (277)
T cd00560         100 PEGLFSTFVDVGPLSEVLEGASRPGHFRGVATVVAKLFNLVQPDRAYFGEKDAQQLAVIRRMVR  163 (277)
T ss_pred             CCCCceEEEecCCCceEEecCCCCccccceeeeehhhhcccCCCeEEECCCccccHHHHHHHHH
Confidence             35554233557889999999                      9 9999999999988888754

PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.

>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase

Probab=98.79  E-value=7.7e-08  Score=95.79  Aligned_cols=129  Identities=21%  Similarity=0.203  Sum_probs=88.1

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-CccccE--EEeCCCcccc
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDE--VIANAPYAIT  141 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~--Vv~~~p~~~t  141 (379)
                      .+++...|+||++|.||+.++++|.+++|.++|.|..+      + +++++.++|++|++. ++..+.  |+...+|-++
T Consensus       139 ~~i~~~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~~~------~-~~~f~~~~R~~~v~~~~~~~~nv~v~~~~~~~is  211 (332)
T TIGR00124       139 NKIGSIVMNANPFTNGHRYLIEQAARQCDWLHLFVVKE------D-ASLFSYDERFALVKQGIQDLSNVTVHNGSAYIIS  211 (332)
T ss_pred             CcEEEEEeCcCCCchHHHHHHHHHHHHCCEEEEEEEeC------C-CCCCCHHHHHHHHHHHhcCCCCEEEEecCCceec
Confidence            46899999999999999999999999999999988632      2 579999999999985 222221  2222223221


Q ss_pred             H------------------------HHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHh----------CCeEEEecc
Q 016998          142 E------------------------QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK----------VGRYKQIKR  187 (379)
Q Consensus       142 ~------------------------efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~----------~g~~~~v~r  187 (379)
                      .                        -|-+.+-..+++..-.+|+.+..-.  +..|.....          .-+..+++|
T Consensus       212 ~atfp~yflk~~~~~~~~~~~ld~~~f~~~ia~~l~i~~r~vg~ep~~~~--t~~yn~~m~~~~~~~~~~~~I~~~~I~R  289 (332)
T TIGR00124       212 RATFPAYFLKEQDVADDCYTEIDLKLFRYKIAPALGITHRFVGTEPLCPV--TALYNQKMKYWLEEPNDAPPIEVVEIQR  289 (332)
T ss_pred             cccchhhhcCChhHHHHHHHHHHHHHHHHhchHhhCCccceeCCCCCCHh--HHHHHHHHHHhhhccCCCCCcEEEEEee
Confidence            0                        1222244568888999999985533  234543221          235678888


Q ss_pred             C----CCCCHHHHHHHHHh
Q 016998          188 T----EGVSSTDIVGRILS  202 (379)
Q Consensus       188 ~----~~VSST~Ir~rI~~  202 (379)
                      .    ..+|.|.||+.|.+
T Consensus       290 ~~~~~~~~SASaIR~~L~~  308 (332)
T TIGR00124       290 KLAAGGPISASTVRELLAK  308 (332)
T ss_pred             ecCCCCeeCHHHHHHHHHc
Confidence            3    35899999999964

ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.

>PRK00380 panC pantoate--beta-alanine ligase; Reviewed

Probab=98.77  E-value=7e-09  Score=100.89  Aligned_cols=110  Identities=20%  Similarity=0.226  Sum_probs=82.9

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhcc-CC--CCCCCHHHHHHHHhcCccccEEEeCCCcccc-H
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KG--PPVLSMEERLALVSGLKWVDEVIANAPYAIT-E  142 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~-K~--~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t-~  142 (379)
                      -|.++|+   +|.||+.+|++|++.++.++|++.++|.-... ..  +.++|.++|.++++.+ +||.++....-++. +
T Consensus        26 ~v~tmG~---lH~GH~~Li~~a~~~a~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~-GvD~v~~p~~~~myp~  101 (281)
T PRK00380         26 LVPTMGA---LHEGHLSLVREARAEADIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA-GVDLVFAPSVEEMYPQ  101 (281)
T ss_pred             EEEccCc---eeHHHHHHHHHHHHhCCEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc-CCCEEEeCCHHHCCCc
Confidence            3567777   99999999999999999888888888764222 22  4588999999999997 89999874222222 2


Q ss_pred             HHHHHHhhccCccEEEEcC----------------------CC-CCCCCCchHHHHHHhCCe
Q 016998          143 QFMNRLFNEHKIDYIIHGD----------------------DP-CLLPDGTDAYALAKKVGR  181 (379)
Q Consensus       143 efl~~ll~~~~~d~VV~Gd----------------------D~-~~g~~g~~~y~~lk~~g~  181 (379)
                      +|...++.. ++..+++|.                      |+ .||.++.+....+++.++
T Consensus       102 ~f~~~i~~~-~~~~vl~G~~RpghF~Gv~tvv~kLf~iv~Pd~a~FG~kd~qq~~~l~~~~~  162 (281)
T PRK00380        102 GLQTYVSVP-GLSDVLEGASRPGHFRGVATVVTKLFNIVQPDVAYFGEKDYQQLAVIRRMVA  162 (281)
T ss_pred             cceeEEEcc-cccccccCCCCCccccchhhHHHHHhhccCCCeeEECCCcchhHHHHHHHHH
Confidence            454433222 377899999                      99 999999999888887653

>cd02156 nt_trans nucleotidyl transferase superfamily

Probab=98.75  E-value=1.1e-08  Score=84.93  Aligned_cols=57  Identities=23%  Similarity=0.283  Sum_probs=49.7

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC
Q 016998           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL  126 (379)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~  126 (379)
                      +++.|+||++|.||+.++++|+++++.+++++..++.... + .++.+.++|.++++++
T Consensus         2 ~~~~G~Fdp~H~GH~~l~~~a~~~~d~~i~~i~~~~~~~~-~-~~~~~~~~R~~~l~~~   58 (105)
T cd02156           2 ARFPGEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVKV-W-QDPHELEERKESIEED   58 (105)
T ss_pred             EEeCCCCCCCCHHHHHHHHHHHHhCCcEEEEEcCCCcccc-c-CChHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999988775432 2 3689999999999985

nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.

>PRK07143 hypothetical protein; Provisional

Probab=98.74  E-value=9.4e-08  Score=92.98  Aligned_cols=98  Identities=19%  Similarity=0.304  Sum_probs=76.8

Q ss_pred             CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCC---
Q 016998          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPW---  331 (379)
Q Consensus       255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~---  331 (379)
                      ....|++-|.||-+|.||..+|++|++.++.++|...+++... .++...++++++||...++++. +|.+++.+..   
T Consensus        14 ~~~~vvaiG~FDGvH~GHq~Ll~~a~~~~~~~vV~tF~~P~~~-~~~~~~~l~~~~er~~~l~~~G-vd~~~~~~F~~~~   91 (279)
T PRK07143         14 FEKPTFVLGGFESFHLGHLELFKKAKESNDEIVIVIFKNPENL-PKNTNKKFSDLNSRLQTLANLG-FKNIILLDFNEEL   91 (279)
T ss_pred             CCCeEEEEccCCcCCHHHHHHHHHHHHCCCcEEEEEeCChHHh-cccCcccCCCHHHHHHHHHHCC-CCEEEEeCCCHHH
Confidence            3567899999999999999999999999999988888764322 1222357999999999999984 6888775421   


Q ss_pred             --CchHHHHHH---cCCcEEEEcCCCCC
Q 016998          332 --EVTKDMITT---FNICLVVHGTVSET  354 (379)
Q Consensus       332 --~~~~~~i~~---~~~d~vv~G~d~~~  354 (379)
                        -..++|++.   ++++.+|.|.|+--
T Consensus        92 a~ls~e~Fi~~ll~l~~~~iVvG~Df~F  119 (279)
T PRK07143         92 QNLSGNDFIEKLTKNQVSFFVVGKDFRF  119 (279)
T ss_pred             hCCCHHHHHHHHHhcCCCEEEECCCccc
Confidence              144667665   79999999999774

>PRK13671 hypothetical protein; Provisional

Probab=98.71  E-value=7e-08  Score=94.47  Aligned_cols=90  Identities=24%  Similarity=0.402  Sum_probs=71.2

Q ss_pred             EEecccCcCCHHHHHHHHHHHHc--CCeEEEEEccchhhhccCC-CCCCCHHHHHHHHhcCccccEEEeCCCcccc----
Q 016998           69 YMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKG-PPVLSMEERLALVSGLKWVDEVIANAPYAIT----  141 (379)
Q Consensus        69 ~~~G~FD~lH~GH~~lL~qA~~~--~d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t----  141 (379)
                      =++-.||++|.||..++++|++.  +|.+++.+..++   ..|+ +.+++.++|.+|++.+ +||.|++ -|+.+.    
T Consensus         4 GIIaeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~---~qrg~pa~~~~~~R~~ma~~~-G~DLViE-LP~~~a~~sA   78 (298)
T PRK13671          4 GIIAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKY---TQRGEIAVASFEKRKKIALKY-GVDKVIK-LPFEYATQAA   78 (298)
T ss_pred             eEEeeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCC---CCCCCCCCCCHHHHHHHHHHc-CCCEEEe-ccHHHHhhch
Confidence            35567999999999999999997  477888776665   3455 6677999999999998 8999997 555443    


Q ss_pred             HHHHH---HHhhccCccEEEEcCCC
Q 016998          142 EQFMN---RLFNEHKIDYIIHGDDP  163 (379)
Q Consensus       142 ~efl~---~ll~~~~~d~VV~GdD~  163 (379)
                      +.|..   .++.++++|.++.|.++
T Consensus        79 e~FA~gaV~lL~~lgvd~l~FGsE~  103 (298)
T PRK13671         79 HIFAKGAIKKLNKEKIDKLIFGSES  103 (298)
T ss_pred             HHHHHHHHHHHHHcCCCEEEECCCC
Confidence            24432   37788999999999876

>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional

Probab=98.70  E-value=6.5e-08  Score=89.27  Aligned_cols=60  Identities=13%  Similarity=0.065  Sum_probs=50.5

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL  126 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~  126 (379)
                      ....+++|-|.++|.||.++|++|.+.||+|+|++.|.......  +.-+|..||..|++..
T Consensus         4 yd~~v~iGRFQPfH~GHl~~I~~al~~~devII~IGSA~~s~t~--~NPFTa~ER~~MI~~a   63 (196)
T PRK13793          4 FDYLVFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQMERNI--KNPFLAIEREQMILSN   63 (196)
T ss_pred             eeEEEEEecCCCCcHHHHHHHHHHHHhCCEEEEEEccCCCCCCC--CCCCCHHHHHHHHHHh
Confidence            34689999999999999999999999999999999996543221  4567899999999864

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=98.68  E-value=1.4e-07  Score=94.21  Aligned_cols=97  Identities=18%  Similarity=0.266  Sum_probs=68.4

Q ss_pred             CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cCcC--ceEeCC-C
Q 016998          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVD--EVIIGA-P  330 (379)
Q Consensus       255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd--~Vii~~-~  330 (379)
                      ..+++++.|+||+||.||+.++++|++.+|.|+|++.+.......|   +| ++.+||..+++.+ +.+|  .|.+.+ +
T Consensus         5 ~~~~~~~~G~F~P~H~GHl~~i~~a~~~~d~l~v~i~s~~~~~~~~---~~-~~~~~R~~mi~~~~~~~~~~r~~~~pi~   80 (340)
T PRK05379          5 RYDYLVFIGRFQPFHNGHLAVIREALSRAKKVIVLIGSADLARSIK---NP-FSFEERAQMIRAALAGIDLARVTIRPLR   80 (340)
T ss_pred             cceEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEEccCCCCCcCC---CC-CCHHHHHHHHHHHhhcCCCceEEEEECC
Confidence            4678999999999999999999999999999999998764322222   35 7999999999666 5444  333321 1


Q ss_pred             CCc-----hHHHHHH-------cCCcEEEEcCCCCCC
Q 016998          331 WEV-----TKDMITT-------FNICLVVHGTVSETN  355 (379)
Q Consensus       331 ~~~-----~~~~i~~-------~~~d~vv~G~d~~~~  355 (379)
                      ...     -...+++       -++|+++.|.|++.+
T Consensus        81 d~~~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~~~  117 (340)
T PRK05379         81 DSLYNDSLWLAEVQAAVAEHAGADARIGLIGHEKDAS  117 (340)
T ss_pred             CCCcChHHHHHHHHHHHHhccCCCCcEEEECCcCCCC
Confidence            111     1112221       478999999777544

>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain

Probab=98.67  E-value=3.4e-08  Score=90.32  Aligned_cols=57  Identities=19%  Similarity=0.255  Sum_probs=47.7

Q ss_pred             EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc
Q 016998          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC  319 (379)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~  319 (379)
                      .++.|+|||||.||+.++++|.+.+|.|+|+|.+..... .+   ++.++.+||..+++.+
T Consensus         2 ~l~~GrF~P~H~GHl~~i~~a~~~~~~vii~i~s~~~~~-~~---~~p~~~~eR~~mi~~~   58 (181)
T cd02168           2 LVYIGRFQPFHNGHLAVVLIALEKAKKVIILIGSARTAR-NI---KNPWTSEEREVMIEAA   58 (181)
T ss_pred             eEEeeccCCCCHHHHHHHHHHHHHCCeEEEEeCCCCCCC-CC---CCCcCHHHHHHHHHHH
Confidence            578999999999999999999999999999998775422 22   2457999999999775

N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.

>PLN02388 phosphopantetheine adenylyltransferase

Probab=98.67  E-value=4.1e-08  Score=89.31  Aligned_cols=99  Identities=24%  Similarity=0.328  Sum_probs=74.1

Q ss_pred             CCCCCCeEEEEcCccccCChHHHHHHHHHHhcC-CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cC------c
Q 016998          251 GPGPNARVVYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RY------V  322 (379)
Q Consensus       251 ~~~~~~~~v~~~G~FDl~H~GHi~~L~~A~~~g-d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~------V  322 (379)
                      .+......|++.|+||.+|.||..+|++|.+++ +.++||+++|+...+ |.....++++++|...++++ ..      +
T Consensus        14 ~~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~-k~~~~~I~~~e~R~~~l~~fl~~~~p~~~~   92 (177)
T PLN02388         14 SPPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSK-KQFAELIQPIEERMHNVEEYIKSIKPELVV   92 (177)
T ss_pred             CCCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcc-cCCCcccCCHHHHHHHHHHHHHHcCCCceE
Confidence            333346789999999999999999999999998 489999999987643 33235799999999888766 22      2


Q ss_pred             CceEeCCCCCchHHHHHHcCCcEEEEcCCCC
Q 016998          323 DEVIIGAPWEVTKDMITTFNICLVVHGTVSE  353 (379)
Q Consensus       323 d~Vii~~~~~~~~~~i~~~~~d~vv~G~d~~  353 (379)
                      +-+-+.+|++.+.   ..-++|.+|.+.+..
T Consensus        93 ~i~~i~D~~Gpt~---~~~~~d~LVVS~ET~  120 (177)
T PLN02388         93 QAEPIIDPYGPSI---VDENLEAIVVSKETL  120 (177)
T ss_pred             EEEEecCCCCCcc---cCCCCCEEEEcHhHh
Confidence            2344567788763   245788888886533

>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=98.64  E-value=1.3e-07  Score=87.53  Aligned_cols=111  Identities=18%  Similarity=0.186  Sum_probs=75.8

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeC----
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIG----  328 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~----  328 (379)
                      +++++++|+||++|.||+.++++|++..  |.+++..+...   ..|.. ....+.++|+.+++ +++..+.+.+.    
T Consensus         4 ~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~---~~k~~-~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~   79 (203)
T PRK00071          4 KRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGP---PHKPQ-KPLAPLEHRLAMLELAIADNPRFSVSDIEL   79 (203)
T ss_pred             cEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCC---CCCCC-CCCCCHHHHHHHHHHHhcCCCceEEeHHHH
Confidence            4789999999999999999999999866  78887776653   22322 36889999998884 55777776664    


Q ss_pred             --CCCCchHHHHHHc---CCc---EEEEcCCCCCC-------CCCCCCceEEEEeee
Q 016998          329 --APWEVTKDMITTF---NIC---LVVHGTVSETN-------TPLTVSLQFLYLPLI  370 (379)
Q Consensus       329 --~~~~~~~~~i~~~---~~d---~vv~G~d~~~~-------~~l~~~~evv~lp~~  370 (379)
                        .....|.+.++.+   .|+   +++.|.|.-..       +.+-..++++.+|+.
T Consensus        80 ~~~~~syT~~tl~~l~~~~p~~~~~fiiG~D~l~~l~~W~~~~~i~~~~~~iv~~R~  136 (203)
T PRK00071         80 ERPGPSYTIDTLRELRARYPDVELVFIIGADALAQLPRWKRWEEILDLVHFVVVPRP  136 (203)
T ss_pred             hCCCCCCHHHHHHHHHHHCCCCcEEEEEcHHHhhhcccccCHHHHHHhCcEEEEeCC
Confidence              1234455555543   355   78899763222       223335666666664

>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase

Probab=98.63  E-value=7.1e-08  Score=88.46  Aligned_cols=108  Identities=16%  Similarity=0.127  Sum_probs=73.7

Q ss_pred             EEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cCcCceEeCC-----
Q 016998          258 VVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIGA-----  329 (379)
Q Consensus       258 ~v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~Vii~~-----  329 (379)
                      +++++|+|||+|.||+.+++.|++.+  |.|++....+.   ..|+  .+..+.++|+.+++.+ +..+.+.+..     
T Consensus         1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~---~~k~--~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~   75 (192)
T cd02165           1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANP---PHKP--PKPASFEHRLEMLKLAIEDNPKFEVSDIEIKR   75 (192)
T ss_pred             CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCC---CCCC--CCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhC
Confidence            46889999999999999999999998  99999876653   2343  4778999999999655 5666666632     


Q ss_pred             -CCCchHHHHHHc---CCc---EEEEcCCCC-------CCCCCCCCceEEEEeee
Q 016998          330 -PWEVTKDMITTF---NIC---LVVHGTVSE-------TNTPLTVSLQFLYLPLI  370 (379)
Q Consensus       330 -~~~~~~~~i~~~---~~d---~vv~G~d~~-------~~~~l~~~~evv~lp~~  370 (379)
                       ....|.+.++.+   .++   +++.|.|.-       ..+.+-..+.++.+++.
T Consensus        76 ~~~~~t~~tl~~l~~~~p~~~~~~liG~D~l~~~~~W~~~~~i~~~~~~iv~~R~  130 (192)
T cd02165          76 DGPSYTIDTLEELRERYPNAELYFIIGSDNLIRLPKWYDWEELLSLVHLVVAPRP  130 (192)
T ss_pred             CCCCCHHHHHHHHHHhccCCCEEEEEcHHHhhhcccccCHHHHHHhCcEEEEeCC
Confidence             124455555444   343   677897632       22233335566666654

Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.

>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional

Probab=98.62  E-value=1.6e-07  Score=85.27  Aligned_cols=107  Identities=22%  Similarity=0.257  Sum_probs=69.9

Q ss_pred             EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cC--c--CceEeCC-C-
Q 016998          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RY--V--DEVIIGA-P-  330 (379)
Q Consensus       258 ~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~--V--d~Vii~~-~-  330 (379)
                      .+++.|+|||||.||+.++++|.+.+|.|+|+|.+...  ..+.+ +| ++.+||..+++.. +.  +  +.+.+.+ + 
T Consensus         2 ~gl~~G~F~P~H~GHl~~i~~a~~~~d~v~v~i~s~~~--~~~~~-~p-~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D   77 (174)
T PRK01153          2 RALFIGRFQPFHKGHLEVIKWILEEVDELIIGIGSAQE--SHTLK-NP-FTAGERILMIRKALEEEGIDLSRYYIIPIPD   77 (174)
T ss_pred             EEEEeeccCCCCHHHHHHHHHHHHhCCEEEEEecCCCC--CCCCC-CC-CCHHHHHHHHHHHHhcCCCCcceeeEecCCC
Confidence            47889999999999999999999999999999975432  11221 34 6899999888644 32  2  2344432 1 


Q ss_pred             CCchHHHHHHc-----CCcEEEEcCCCCCCCCCCCCceEEEEe
Q 016998          331 WEVTKDMITTF-----NICLVVHGTVSETNTPLTVSLQFLYLP  368 (379)
Q Consensus       331 ~~~~~~~i~~~-----~~d~vv~G~d~~~~~~l~~~~evv~lp  368 (379)
                      ...........     .+|+++-|..+-.....+.+.+++-.|
T Consensus        78 ~~~~~~w~~~v~~~~~~~d~v~~~~~y~~~~f~~~g~~v~~~p  120 (174)
T PRK01153         78 IEFNSIWVSHVESYTPPFDVVYTGNPLVARLFREAGYEVRQPP  120 (174)
T ss_pred             cchHHHHHHHHHHhCCCCCEEEECChHHHHhchhhCCeEecCC
Confidence            12233333333     679999886433333445566666665

>PRK13671 hypothetical protein; Provisional

Probab=98.49  E-value=4.2e-07  Score=89.01  Aligned_cols=87  Identities=18%  Similarity=0.273  Sum_probs=69.2

Q ss_pred             CccccCChHHHHHHHHHHhc--CCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCC-CC-c-----
Q 016998          263 GAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAP-WE-V-----  333 (379)
Q Consensus       263 G~FDl~H~GHi~~L~~A~~~--gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~-~~-~-----  333 (379)
                      -+|||||.||+.++++|++.  .|.+|+....|.   ..||. .++++..+|+++++.+ .||-|+--+. +. .     
T Consensus         7 aeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~---~qrg~-pa~~~~~~R~~ma~~~-G~DLViELP~~~a~~sAe~F   81 (298)
T PRK13671          7 AEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKY---TQRGE-IAVASFEKRKKIALKY-GVDKVIKLPFEYATQAAHIF   81 (298)
T ss_pred             eeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCC---CCCCC-CCCCCHHHHHHHHHHc-CCCEEEeccHHHHhhchHHH
Confidence            47999999999999999987  588888887775   34554 5677999999999998 8998884321 11 2     


Q ss_pred             ---hHHHHHHcCCcEEEEcCCCCC
Q 016998          334 ---TKDMITTFNICLVVHGTVSET  354 (379)
Q Consensus       334 ---~~~~i~~~~~d~vv~G~d~~~  354 (379)
                         ...++.+.++|.++-|+++..
T Consensus        82 A~gaV~lL~~lgvd~l~FGsE~~d  105 (298)
T PRK13671         82 AKGAIKKLNKEKIDKLIFGSESND  105 (298)
T ss_pred             HHHHHHHHHHcCCCEEEECCCCCC
Confidence               457889999999999988754

>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase

Probab=98.48  E-value=4e-07  Score=90.72  Aligned_cols=65  Identities=17%  Similarity=0.224  Sum_probs=55.2

Q ss_pred             CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHH-HHccCcCceEeC
Q 016998          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDEVIIG  328 (379)
Q Consensus       255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v-~~~~~Vd~Vii~  328 (379)
                      ++++..+.|+|||||.||+.++++|.+++|.++|+|..+      +   .+.++.++|..++ ++++..++|.+.
T Consensus       138 ~~~i~~~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~~~------~---~~~f~~~~R~~~v~~~~~~~~nv~v~  203 (332)
T TIGR00124       138 GNKIGSIVMNANPFTNGHRYLIEQAARQCDWLHLFVVKE------D---ASLFSYDERFALVKQGIQDLSNVTVH  203 (332)
T ss_pred             CCcEEEEEeCcCCCchHHHHHHHHHHHHCCEEEEEEEeC------C---CCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence            468999999999999999999999999999999999632      2   4799999999888 455777776653

ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.

>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional

Probab=98.46  E-value=3.7e-07  Score=84.32  Aligned_cols=60  Identities=20%  Similarity=0.351  Sum_probs=51.0

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC  319 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~  319 (379)
                      ..+.++.|.|.|||.||++.+++|.+.+|+|||||.|.+.....|   +|+ +..||..++...
T Consensus         4 yd~~v~iGRFQPfH~GHl~~I~~al~~~devII~IGSA~~s~t~~---NPF-Ta~ER~~MI~~a   63 (196)
T PRK13793          4 FDYLVFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQMERNIK---NPF-LAIEREQMILSN   63 (196)
T ss_pred             eeEEEEEecCCCCcHHHHHHHHHHHHhCCEEEEEEccCCCCCCCC---CCC-CHHHHHHHHHHh
Confidence            457889999999999999999999999999999999986544433   565 899999888665

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=98.46  E-value=3.6e-07  Score=90.78  Aligned_cols=58  Identities=24%  Similarity=0.144  Sum_probs=48.8

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG  125 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~  125 (379)
                      +++++.|+||++|.||+.++++|.+++|+|+|.+.+.+.  ..|..+..+.++|++|++.
T Consensus         2 ~i~i~~GsFdP~H~GHl~ii~~a~~~~d~v~v~~~~~~~--~~~~~~~~~~~~R~~~l~~   59 (325)
T TIGR01526         2 TIGVVFGKFYPLHTGHIYLIYEAFSKVDELHIVVGSLFY--DSKAKRPPPVQDRLRWLRE   59 (325)
T ss_pred             cEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCc--CccCCCCCCHHHHHHHHHH
Confidence            478999999999999999999999999999998876321  1133678899999999975

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=98.46  E-value=4.3e-07  Score=90.20  Aligned_cols=67  Identities=16%  Similarity=0.161  Sum_probs=54.3

Q ss_pred             eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHH-HHccCcCc-eEe
Q 016998          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDE-VII  327 (379)
Q Consensus       257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v-~~~~~Vd~-Vii  327 (379)
                      +++++.|+|||+|.||+.++++|.+++|.|+|.+.+..   ..+.+ .+.++.++|+.++ ++++.... |.+
T Consensus         2 ~i~i~~GsFdP~H~GHl~ii~~a~~~~d~v~v~~~~~~---~~~~~-~~~~~~~~R~~~l~~~~~~~~~~v~v   70 (325)
T TIGR01526         2 TIGVVFGKFYPLHTGHIYLIYEAFSKVDELHIVVGSLF---YDSKA-KRPPPVQDRLRWLREIFKYQKNQIFI   70 (325)
T ss_pred             cEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCC---cCccC-CCCCCHHHHHHHHHHHhccCCCeEEE
Confidence            57899999999999999999999999999999997632   12111 5788999999988 55587777 554

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]

Probab=98.42  E-value=8.8e-07  Score=83.45  Aligned_cols=137  Identities=25%  Similarity=0.288  Sum_probs=89.2

Q ss_pred             hcccCCCCCeEEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEccchhhhccCC--CCCCCHHHHHHHHhc----Ccc-
Q 016998           57 KKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKG--PPVLSMEERLALVSG----LKW-  128 (379)
Q Consensus        57 ~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~----~~~-  128 (379)
                      .+.++.++..++...|+||-+|.||.-+|..|..++ ++++|||..|+.+.+ |.  ..+-+.++|++.+..    ++. 
T Consensus       134 e~~~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~k-K~~~Eliepie~R~~~V~~Fl~~IKp~  212 (293)
T KOG3351|consen  134 EKSGPANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKK-KVLKELIEPIEERKEHVSNFLKSIKPD  212 (293)
T ss_pred             ccccchhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHH-hHHHHHhhhHHHHHHHHHHHHHhcCCC
Confidence            334455667789999999999999999999999998 889999998886543 33  568899999998764    322 


Q ss_pred             --ccEEEeCCCccccHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCe--EEEeccC---CCCCHHHHHHHHH
Q 016998          129 --VDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR--YKQIKRT---EGVSSTDIVGRIL  201 (379)
Q Consensus       129 --VD~Vv~~~p~~~t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~--~~~v~r~---~~VSST~Ir~rI~  201 (379)
                        ++.+=.-.||..+-.       .-..+.+|+...-..|...-.....-+...+  ++.+.-.   +.+|+|++++...
T Consensus       213 l~~~~vpi~Dp~GPt~~-------d~elE~lVVS~ET~~Ga~aVNr~R~E~glseLai~vVell~~~~kls~t~~~~~kv  285 (293)
T KOG3351|consen  213 LNVRVVPIHDPFGPTIT-------DPELEALVVSEETKTGATAVNRKRVERGLSELAIYVVELLYDAQKLSSTENRELKV  285 (293)
T ss_pred             ceEEEEecccCCCCCcc-------CCcceEEEEeeccccchhhhhHHHHHcCCchheEEEEeeccChhhcchhHHHHhhh
Confidence              232323455544321       1246788888776665433322211111222  3344332   4589999887544

>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]

Probab=98.37  E-value=2.6e-06  Score=76.99  Aligned_cols=60  Identities=23%  Similarity=0.316  Sum_probs=51.2

Q ss_pred             CCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc
Q 016998           64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG  125 (379)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~  125 (379)
                      ++++.+..|-|-++|.||+++|+.|.+..|+|+|++.|+..-...  +--+|..||..|++.
T Consensus         2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~vDeliI~iGSa~~~~t~--~nPfTagER~~mi~~   61 (172)
T COG1056           2 RMKRGVYFGRFQPLHTGHLYVIKRALSKVDELIIVIGSAQESHTL--KNPFTAGERIPMIRD   61 (172)
T ss_pred             CceEEEEEeccCCccHhHHHHHHHHHHhCCEEEEEEccCcccccc--cCCCCccchhHHHHH
Confidence            467899999999999999999999999999999999998753222  345778999999884

>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]

Probab=98.32  E-value=1.6e-06  Score=81.77  Aligned_cols=84  Identities=32%  Similarity=0.455  Sum_probs=64.1

Q ss_pred             CCCCCCCeEEEEcCccccCChHHHHHHHHHHhcC-CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc----c---C
Q 016998          250 KGPGPNARVVYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC----R---Y  321 (379)
Q Consensus       250 ~~~~~~~~~v~~~G~FDl~H~GHi~~L~~A~~~g-d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~----~---~  321 (379)
                      .++..+..++.++|+||-+|.||-=+|..|..++ |.|||||+.|+.+.+.+-+ --+-+.+||++.|..+    |   .
T Consensus       136 ~~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~kK~~~-Eliepie~R~~~V~~Fl~~IKp~l~  214 (293)
T KOG3351|consen  136 SGPANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKKKVLK-ELIEPIEERKEHVSNFLKSIKPDLN  214 (293)
T ss_pred             ccchhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHHhHHH-HHhhhHHHHHHHHHHHHHhcCCCce
Confidence            4455556789999999999999999999999987 8999999999988764422 3588999999776543    2   2


Q ss_pred             cCceEeCCCCCch
Q 016998          322 VDEVIIGAPWEVT  334 (379)
Q Consensus       322 Vd~Vii~~~~~~~  334 (379)
                      |+.|=+-+|++++
T Consensus       215 ~~~vpi~Dp~GPt  227 (293)
T KOG3351|consen  215 VRVVPIHDPFGPT  227 (293)
T ss_pred             EEEEecccCCCCC
Confidence            4444455666654

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=98.31  E-value=1.6e-06  Score=88.47  Aligned_cols=116  Identities=15%  Similarity=0.187  Sum_probs=77.5

Q ss_pred             CCCCCCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcch-----hccCCCCCCCCCHHHHHHHHHHc-cCcCc
Q 016998          251 GPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV-----SEHRGSYHPIMHLHERSLSVLAC-RYVDE  324 (379)
Q Consensus       251 ~~~~~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v-----~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~  324 (379)
                      .+....+++++.|+||++|.||+.++++|.+++|.|+|+|.++..-     +..|  ....++.++|..+++.. +..+.
T Consensus        47 ~~~~~~~~~v~~G~FdP~H~GH~~lI~~A~~~~d~l~v~v~~~~~~~~~~~~~~~--~~~~~s~~~R~~~l~~~~~~~~~  124 (399)
T PRK08099         47 FPRQMKKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIICYDDERDRKLFEDSA--MSQQPTVSDRLRWLLQTFKYQKN  124 (399)
T ss_pred             hhhhcCcEEEEEEecCCCCHHHHHHHHHHHHHCCeeEEEEEccCCcchhhccccc--ccCCCCHHHHHHHHHHHhCCCCC
Confidence            3334467899999999999999999999999999999999887521     1111  14688999999888655 77776


Q ss_pred             eEeCC----C---C--C------chHHHHHH--cCCcEEEEcCCCCCCCCC-CCCceEEEEe
Q 016998          325 VIIGA----P---W--E------VTKDMITT--FNICLVVHGTVSETNTPL-TVSLQFLYLP  368 (379)
Q Consensus       325 Vii~~----~---~--~------~~~~~i~~--~~~d~vv~G~d~~~~~~l-~~~~evv~lp  368 (379)
                      |.+..    +   +  +      .....+..  .++|+++-|.+.+.+..+ -.+.+++.++
T Consensus       125 v~v~~~~~~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~~d~~~~~~~~~~~~~~vd  186 (399)
T PRK08099        125 IKIHAFNEEGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEEQDAPQYEEHLGIETVLVD  186 (399)
T ss_pred             EEEEecCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCCCChHHHHHhcCCceeeec
Confidence            66641    1   1  1      11222333  268999999776533222 2355555444

>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=98.30  E-value=4.9e-06  Score=75.54  Aligned_cols=65  Identities=15%  Similarity=0.181  Sum_probs=48.4

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cCc--CceEe
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYV--DEVII  327 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~V--d~Vii  327 (379)
                      +++++.+|+|||+|.||+.+.+++ ...|.+++..+...   ..|   ++..+.++|+.+++.. +..  +.+.+
T Consensus         2 ~~i~ifGGSFDP~H~GHl~ia~~~-~~~d~v~~vP~~~~---~~~---k~~~~~~~R~~M~~~ai~~~~~~~~~v   69 (174)
T PRK08887          2 KKIAVFGSAFNPPSLGHKSVIESL-SHFDLVLLVPSIAH---AWG---KTMLDYETRCQLVDAFIQDLGLSNVQR   69 (174)
T ss_pred             CeEEEeCCCCCCCCHHHHHHHHHh-hcCCEEEEEECCCC---ccc---CCCCCHHHHHHHHHHHHhccCCCceEE
Confidence            368999999999999999999996 46799888765421   222   3677999999988544 543  35655

>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase

Probab=98.26  E-value=3.7e-06  Score=77.36  Aligned_cols=107  Identities=16%  Similarity=0.152  Sum_probs=69.4

Q ss_pred             EcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeCC------CC
Q 016998          261 IDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGA------PW  331 (379)
Q Consensus       261 ~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~~------~~  331 (379)
                      .+|+|||+|.||+.++++|.+..  |.+++....+.   ..|.. ....+.++|+.+++ +++..+.+.+..      ..
T Consensus         2 ~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~---p~k~~-~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~   77 (193)
T TIGR00482         2 FGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANP---PHKKT-YEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGP   77 (193)
T ss_pred             ccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCC---CCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCC
Confidence            57999999999999999999875  67777666553   23332 34579999999985 667777666642      12


Q ss_pred             CchHHHHHHc---CCc---EEEEcCCCCCC-------CCCCCCceEEEEeeec
Q 016998          332 EVTKDMITTF---NIC---LVVHGTVSETN-------TPLTVSLQFLYLPLIN  371 (379)
Q Consensus       332 ~~~~~~i~~~---~~d---~vv~G~d~~~~-------~~l~~~~evv~lp~~~  371 (379)
                      ..|.+.++.+   -++   +++.|.|.-..       +.+-..+.++.+++..
T Consensus        78 syT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~~~~iv~~R~g  130 (193)
T TIGR00482        78 SYTIDTLKHLKKKYPDVELYFIIGADALRSFPLWKDWQELLELVHLVIVPRPG  130 (193)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEEcHHHhhhhccccCHHHHHHhCcEEEEeCCC
Confidence            3355555444   344   57889763322       2233346666666543

This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.

>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]

Probab=98.19  E-value=2.7e-06  Score=76.91  Aligned_cols=60  Identities=23%  Similarity=0.253  Sum_probs=51.0

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC  319 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~  319 (379)
                      ++..++-|.|-|||.||+.++++|.+..|.|||+|.||+.....|   +|+ |-.||..+++.+
T Consensus         3 ~~rgv~~GRFqP~H~GHl~vi~~al~~vDeliI~iGSa~~~~t~~---nPf-TagER~~mi~~~   62 (172)
T COG1056           3 MKRGVYFGRFQPLHTGHLYVIKRALSKVDELIIVIGSAQESHTLK---NPF-TAGERIPMIRDR   62 (172)
T ss_pred             ceEEEEEeccCCccHhHHHHHHHHHHhCCEEEEEEccCccccccc---CCC-CccchhHHHHHH
Confidence            567889999999999999999999999999999999998654444   455 888999888744

>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated

Probab=98.13  E-value=7.7e-06  Score=81.75  Aligned_cols=110  Identities=17%  Similarity=0.154  Sum_probs=72.4

Q ss_pred             eEEEEcCccccCChHHHHHHHHHHhc--CCEEEEEEecCcchhccCCCCCCCCCHHHHHHHH-HHccCcCceEeCCC---
Q 016998          257 RVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDEVIIGAP---  330 (379)
Q Consensus       257 ~~v~~~G~FDl~H~GHi~~L~~A~~~--gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v-~~~~~Vd~Vii~~~---  330 (379)
                      ++++.+|+|||+|.||+.+.+.|.+.  .|.+++..+.+.   ..|.. .+..+.++|+.++ ++++..+.+.+.+.   
T Consensus         2 ~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~---p~K~~-~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~   77 (342)
T PRK07152          2 KIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYIN---PFKKK-QKASNGEHRLNMLKLALKNLPKMEVSDFEIK   77 (342)
T ss_pred             eEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCC---CCCCC-CCCCCHHHHHHHHHHHHhhCCCeEEeHHHHh
Confidence            68899999999999999999999875  488887776543   33432 3455568999888 45566666665321   


Q ss_pred             ---CCchHHH---HHHcCCc---EEEEcCCCCCC-------CCCCCCceEEEEeee
Q 016998          331 ---WEVTKDM---ITTFNIC---LVVHGTVSETN-------TPLTVSLQFLYLPLI  370 (379)
Q Consensus       331 ---~~~~~~~---i~~~~~d---~vv~G~d~~~~-------~~l~~~~evv~lp~~  370 (379)
                         ...|.+.   +++.-|+   +++.|.|.-..       +.+-..++++.+|+.
T Consensus        78 ~~~~syt~~tl~~l~~~~p~~~~~~iiG~D~~~~l~~W~~~~~l~~~~~~iv~~R~  133 (342)
T PRK07152         78 RQNVSYTIDTIKYFKKKYPNDEIYFIIGSDNLEKFKKWKNIEEILKKVQIVVFKRK  133 (342)
T ss_pred             CCCCCcHHHHHHHHHHhCCCCcEEEEecHHHhhhcccccCHHHHHHhCCEEEEECC
Confidence               1233344   4443454   78889763332       334446777777764

>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain

Probab=98.12  E-value=1.9e-05  Score=72.27  Aligned_cols=100  Identities=14%  Similarity=0.149  Sum_probs=70.4

Q ss_pred             ccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cCcCceEeCCCCC----------
Q 016998          264 AFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIGAPWE----------  332 (379)
Q Consensus       264 ~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~Vii~~~~~----------  332 (379)
                      .|||+|.||++++++|.+.+|.++|++-+.      +   .+.++.++|.++++.. +..+.|.+....+          
T Consensus         7 ~~DPiH~GHl~i~~~a~~~~d~~~V~v~p~------~---~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v~~~~~~~   77 (182)
T smart00764        7 NANPFTLGHRYLVEQAAAECDWVHLFVVSE------D---ASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATFPS   77 (182)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCceEEEEEeC------C---CCCCCHHHHHHHHHHHhccCCCEEEEecCCceeccccChh
Confidence            699999999999999999999999888754      2   3567999999888544 6544433321100          


Q ss_pred             ----------------chHHHH----HHcCCcEEEEcCCCCCC-----------CCCCCCceEEEEeeecc
Q 016998          333 ----------------VTKDMI----TTFNICLVVHGTVSETN-----------TPLTVSLQFLYLPLINY  372 (379)
Q Consensus       333 ----------------~~~~~i----~~~~~d~vv~G~d~~~~-----------~~l~~~~evv~lp~~~~  372 (379)
                                      ...+|+    +++++..++.|.|+-..           ...+.++++.-+|....
T Consensus        78 ~~~~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df~FG~~~~G~~~~L~~~~~~g~~v~~I~r~~~  148 (182)
T smart00764       78 YFLKEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPVTAIYNQTMKQTLLSPAIEVVEIERKKA  148 (182)
T ss_pred             hhcCchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCCCCCCCCccCHHHHHHHhhCCCEEEEEecccC
Confidence                            123444    46899999999987654           12344788888877543

Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.

>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2

Probab=98.12  E-value=1e-05  Score=72.29  Aligned_cols=114  Identities=20%  Similarity=0.231  Sum_probs=68.3

Q ss_pred             CCeEEEEcCccccCChHHHHHHHHHHhcC---CEEE--EEEecCc--chhccCCCCCCCCCHHHHHHHHHHccCcCceEe
Q 016998          255 NARVVYIDGAFDLFHAGHVEILKKARQLG---DFLL--VGIYTDQ--IVSEHRGSYHPIMHLHERSLSVLACRYVDEVII  327 (379)
Q Consensus       255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~g---d~li--Vgv~~D~--~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii  327 (379)
                      .++.+++-|.||-+|.||..+|++|.+.+   +...  +....+.  ..+..+ ....+++.+||...++++ .||.+++
T Consensus         4 ~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~-~~~~l~s~~ek~~~l~~~-Gvd~~~~   81 (157)
T PF06574_consen    4 NKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDK-PPKLLTSLEEKLELLESL-GVDYVIV   81 (157)
T ss_dssp             -S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTC-CGGBSS-HHHHHHHHHHT-TESEEEE
T ss_pred             CCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCC-cccCCCCHHHHHHHHHHc-CCCEEEE
Confidence            45789999999999999999999988775   3333  3333332  122112 225699999999999997 4898877


Q ss_pred             CCC-----CCchHHHHHH-----cCCcEEEEcCCCCCCC------------CCCCCceEEEEeee
Q 016998          328 GAP-----WEVTKDMITT-----FNICLVVHGTVSETNT------------PLTVSLQFLYLPLI  370 (379)
Q Consensus       328 ~~~-----~~~~~~~i~~-----~~~d~vv~G~d~~~~~------------~l~~~~evv~lp~~  370 (379)
                      .+.     .-...+|++.     +++..+|.|.|+-...            .-+.+.++..+|-.
T Consensus        82 ~~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~~~G~~~~L~~~~~~~g~~v~~v~~~  146 (157)
T PF06574_consen   82 IPFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGKNRSGDVELLKELGKEYGFEVEVVPPV  146 (157)
T ss_dssp             E-CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESGGGEEEHHHHHHCTTTT-SEEEEE---
T ss_pred             ecchHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCCCCCCCHHHHHHhcccCceEEEEECCE
Confidence            432     2345677775     6899999999976441            22345777777654

7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.

>cd02169 Citrate_lyase_ligase Citrate lyase ligase

Probab=98.10  E-value=7.4e-06  Score=80.52  Aligned_cols=107  Identities=13%  Similarity=0.167  Sum_probs=76.5

Q ss_pred             CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHH-ccCcCceEeCCCCC-
Q 016998          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWE-  332 (379)
Q Consensus       255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~-~~~Vd~Vii~~~~~-  332 (379)
                      .++++-+-|+|||+|.||+.++++|.+.+|.++|.+-+.      +   .+.++.++|..+++. ++..+.+.+....+ 
T Consensus       113 ~~~~~~~~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~~------~---~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~l  183 (297)
T cd02169         113 GKKIAAIVMNANPFTLGHRYLVEKAAAENDWVHLFVVSE------D---KSLFSFADRFKLVKKGTKHLKNVTVHSGGDY  183 (297)
T ss_pred             CCceEEEEecCCCCchHHHHHHHHHHhhCCeEEEEEEcC------C---CCCCCHHHHHHHHHHHhCCCCCEEEEecCCe
Confidence            357889999999999999999999999999998888643      2   478899999988854 46555444422211 


Q ss_pred             -------------------------chHHHH----HHcCCcEEEEcCCCCCCC----------C-CCCCceEEEEeee
Q 016998          333 -------------------------VTKDMI----TTFNICLVVHGTVSETNT----------P-LTVSLQFLYLPLI  370 (379)
Q Consensus       333 -------------------------~~~~~i----~~~~~d~vv~G~d~~~~~----------~-l~~~~evv~lp~~  370 (379)
                                               ...+|+    +++++..+|.|.|+-...          . .+.+.+++.+|..
T Consensus       184 ~v~~~~~~~~~~~~~~~~~~~~a~lsa~~Fi~iL~~~l~~~~ivvG~Df~FG~~r~G~~~l~~~~~~~gf~v~~v~~~  261 (297)
T cd02169         184 IISSATFPSYFIKEQDVVIKAQTALDARIFRKYIAPALNITKRYVGEEPFSRVTAIYNQTMQEELLSPAIEVIEIERK  261 (297)
T ss_pred             eeccccChhhhcCChhHHHHHHhcCCHHHHHHHHHHHcCCcEEEEcCCCCCCCcchhHHHHHHhcccCCCEEEEeccc
Confidence                                     123444    457999999999876541          1 2236777776643

Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.

>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]

Probab=98.03  E-value=1.8e-05  Score=73.41  Aligned_cols=114  Identities=18%  Similarity=0.188  Sum_probs=74.9

Q ss_pred             CCeEEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHH-HHccCcCceEeC---
Q 016998          255 NARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDEVIIG---  328 (379)
Q Consensus       255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v-~~~~~Vd~Vii~---  328 (379)
                      .+++++.+|+|||.|.||+.+.++|.+..  |.|+.-.+..   +..|.. .+.-+.++|..++ ++++..+...+.   
T Consensus         2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~---~p~k~~-~~~a~~~~R~~Ml~la~~~~~~~~v~~~e   77 (197)
T COG1057           2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPV---PPHKKK-KELASAEHRLAMLELAIEDNPRFEVSDRE   77 (197)
T ss_pred             CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCC---CCCCCC-ccCCCHHHHHHHHHHHHhcCCCcceeHHH
Confidence            46899999999999999999999998765  5544444433   233432 4789999999887 677766653321   


Q ss_pred             ---CCCCchHH---HHH-HcCCcE---EEEcCCCCCC-------CCCCCCceEEEEeeecc
Q 016998          329 ---APWEVTKD---MIT-TFNICL---VVHGTVSETN-------TPLTVSLQFLYLPLINY  372 (379)
Q Consensus       329 ---~~~~~~~~---~i~-~~~~d~---vv~G~d~~~~-------~~l~~~~evv~lp~~~~  372 (379)
                         .....|.|   .++ +.++|.   ++-|.|.-..       +.+-.-++++-+++.-.
T Consensus        78 ~~r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~~W~~~~ell~~~~~vv~~Rp~~  138 (197)
T COG1057          78 IKRGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLPKWYDWDELLKLVTFVVAPRPGY  138 (197)
T ss_pred             HHcCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhhhhhhhhHHHHHHhCCEEEEecCCc
Confidence               11233333   333 667884   8899874433       33445667777666554

>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=98.01  E-value=2.9e-05  Score=74.27  Aligned_cols=109  Identities=15%  Similarity=0.090  Sum_probs=69.1

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcC----ceEeC
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVD----EVIIG  328 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd----~Vii~  328 (379)
                      +++.+.+|+||+.|.||+.+.++|.+..  |.+++--+.+.   ..|   .+..+.++|+.|++ +++..|    .+.+.
T Consensus        22 ~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~p---p~K---~~~~~~~~Rl~M~~lAi~~~~~~~~~~~v~   95 (243)
T PRK06973         22 RRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQP---WQK---ADVSAAEHRLAMTRAAAASLVLPGVTVRVA   95 (243)
T ss_pred             ceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcC---CCC---CCCCCHHHHHHHHHHHHHhccCCCceEEEe
Confidence            5789999999999999999999998764  77777766553   223   36779999998884 445321    23222


Q ss_pred             ------CCCCchHHHHHHc---C-Cc---EEEEcCCCCCC-------CCCCCCceEEEEeee
Q 016998          329 ------APWEVTKDMITTF---N-IC---LVVHGTVSETN-------TPLTVSLQFLYLPLI  370 (379)
Q Consensus       329 ------~~~~~~~~~i~~~---~-~d---~vv~G~d~~~~-------~~l~~~~evv~lp~~  370 (379)
                            .....|.+.++.+   - ++   +++.|.|.-..       +.+-..+.++.+++.
T Consensus        96 ~~Ei~~~g~syTidTL~~l~~~~~p~~~~~fiiG~D~l~~l~~W~~~~~L~~~~~lvV~~R~  157 (243)
T PRK06973         96 TDEIEHAGPTYTVDTLARWRERIGPDASLALLIGADQLVRLDTWRDWRRLFDYAHLCAATRP  157 (243)
T ss_pred             HhhhhCCCCCcHHHHHHHHHHHcCCCCCEEEEEchhhHhhcCCcccHHHHHHhCCEEEEECC
Confidence                  1123445555443   2 55   68889763322       223334566666553

>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6

Probab=97.99  E-value=8.1e-05  Score=67.46  Aligned_cols=124  Identities=20%  Similarity=0.209  Sum_probs=84.2

Q ss_pred             ecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-C---------ccccEEEeCCCcc-
Q 016998           71 DGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-L---------KWVDEVIANAPYA-  139 (379)
Q Consensus        71 ~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~---------~~VD~Vv~~~p~~-  139 (379)
                      ..+-.++++||+.|+++|.+.+|.|.|-|.+.+       .-+++.++|++|++. +         .+-|++|..+.|. 
T Consensus         5 VMNaNPFT~GH~yLiE~Aa~~~d~l~vFVV~eD-------~S~Fpf~~R~~LVk~G~~~L~NV~V~~~g~YiIS~aTFPs   77 (182)
T PF08218_consen    5 VMNANPFTLGHRYLIEQAAKECDWLHVFVVSED-------RSLFPFADRYELVKEGTADLPNVTVHPGGDYIISSATFPS   77 (182)
T ss_pred             EEcCCCCccHHHHHHHHHHHhCCEEEEEEEccc-------cCcCCHHHHHHHHHHHhCcCCCEEEEcCCCeeeecccChh
Confidence            345679999999999999999998877666643       467999999999984 1         1224444433331 


Q ss_pred             -cc-H--------------HHHHHHhhccCccEEEEcCCCCCCCCCchHHH-----HHHhC-CeEEEeccC----CCCCH
Q 016998          140 -IT-E--------------QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYA-----LAKKV-GRYKQIKRT----EGVSS  193 (379)
Q Consensus       140 -~t-~--------------efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~-----~lk~~-g~~~~v~r~----~~VSS  193 (379)
                       |. +              -|.+.+...+++..-.+|+.+..-..  ..|.     .|... -++.+++|.    +.||.
T Consensus        78 YFlK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~vT--~~YN~~M~~~Lp~~gi~v~ei~R~~~~g~~ISA  155 (182)
T PF08218_consen   78 YFLKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPVT--RIYNEAMKEILPPYGIEVVEIPRKEINGEPISA  155 (182)
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHHH--HHHHHHHHHhccccCCEEEEEecccCCCcEEcH
Confidence             00 0              23333445689999999998855332  2333     23334 367889984    35999


Q ss_pred             HHHHHHHHhc
Q 016998          194 TDIVGRILSS  203 (379)
Q Consensus       194 T~Ir~rI~~~  203 (379)
                      |..|+.|.++
T Consensus       156 S~VR~~l~~~  165 (182)
T PF08218_consen  156 SRVRKLLKEG  165 (182)
T ss_pred             HHHHHHHHcC
Confidence            9999999865

2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity

>TIGR00018 panC pantoate--beta-alanine ligase

Probab=97.93  E-value=2e-05  Score=76.79  Aligned_cols=64  Identities=30%  Similarity=0.301  Sum_probs=53.7

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhcc-CC--CCCCCHHHHHHHHhcCccccEEEe
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KG--PPVLSMEERLALVSGLKWVDEVIA  134 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~-K~--~pi~t~eER~~~l~~~~~VD~Vv~  134 (379)
                      -|.|+|+   +|.||+.||++|++.++.++|.+..+|.-... ..  +.+++.++|.++++.+ +||.++.
T Consensus        26 ~VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~   92 (282)
T TIGR00018        26 FVPTMGN---LHDGHMSLIDRAVAENDVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL-GVDVVFA   92 (282)
T ss_pred             EEECCCc---ccHHHHHHHHHHHHhCCeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc-CCCEEEC
Confidence            4679999   99999999999999999899999888764222 22  4588999999999997 8999886

This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.

>PLN02660 pantoate--beta-alanine ligase

Probab=97.85  E-value=3.6e-05  Score=75.02  Aligned_cols=65  Identities=26%  Similarity=0.305  Sum_probs=54.3

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhcc-CC--CCCCCHHHHHHHHhcCccccEEEe
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KG--PPVLSMEERLALVSGLKWVDEVIA  134 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~-K~--~pi~t~eER~~~l~~~~~VD~Vv~  134 (379)
                      --|.|+|.   +|.||+.||++|++.++.++|.+..+|.-... ..  +.+++.++|.++++.+ +||.++.
T Consensus        24 gfVpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~   91 (284)
T PLN02660         24 ALVPTMGY---LHEGHLSLVRAARARADVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL-GVDAVFN   91 (284)
T ss_pred             EEEEcCch---hhHHHHHHHHHHHHhCCEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc-CCCEEEC
Confidence            34788999   99999999999999999889988888764221 22  4688999999999997 8999886

>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase

Probab=97.80  E-value=6.1e-05  Score=73.75  Aligned_cols=95  Identities=14%  Similarity=0.121  Sum_probs=64.2

Q ss_pred             EEEcCccccCChHHHHHHHHHHhcC-----CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCC--
Q 016998          259 VYIDGAFDLFHAGHVEILKKARQLG-----DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPW--  331 (379)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~g-----d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~--  331 (379)
                      |++-|.||-+|.||..+|++|++.+     .-.++........--......++++.+||...++++ .||.+++-+..  
T Consensus         1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~-Gvd~~~~~~F~~~   79 (288)
T TIGR00083         1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIK-GVEQLLVVVFDEE   79 (288)
T ss_pred             CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHc-CCCEEEEeCCCHH
Confidence            3567999999999999999887653     344555544322111111112399999999999998 49988885431  


Q ss_pred             ---CchHHHHH-----HcCCcEEEEcCCCCC
Q 016998          332 ---EVTKDMIT-----TFNICLVVHGTVSET  354 (379)
Q Consensus       332 ---~~~~~~i~-----~~~~d~vv~G~d~~~  354 (379)
                         -...+|++     ++++..+|.|.|+--
T Consensus        80 ~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~F  110 (288)
T TIGR00083        80 FANLSALQFIDQLIVKHLHVKFLVVGDDFRF  110 (288)
T ss_pred             HHcCCHHHHHHHHHHhccCCcEEEECCCccC
Confidence               12344553     368999999999763

multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).

>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic

Probab=97.72  E-value=0.00011  Score=69.41  Aligned_cols=82  Identities=16%  Similarity=0.143  Sum_probs=52.4

Q ss_pred             EEEEcCccccCChHHHHHHHHHHhcC--CE--EEEEEe-cCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeCCC-
Q 016998          258 VVYIDGAFDLFHAGHVEILKKARQLG--DF--LLVGIY-TDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAP-  330 (379)
Q Consensus       258 ~v~~~G~FDl~H~GHi~~L~~A~~~g--d~--liVgv~-~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~~~-  330 (379)
                      +.+.+|+|||.|.||+.+++.|.+..  |.  .+|.+. .=...+..|   .+..+.++|+.+++ ++...+.+.+.+. 
T Consensus         2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~k---~~~~~~~~Rl~Ml~lai~~~~~~~v~~~E   78 (225)
T cd09286           2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYGK---KGLASAKHRVAMCRLAVQSSDWIRVDDWE   78 (225)
T ss_pred             EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCCC---CCCCCHHHHHHHHHHHHccCCCEEEEehh
Confidence            57889999999999999999998765  22  232221 100011123   46779999998885 7777776666432 


Q ss_pred             -----CCchHHHHHHcC
Q 016998          331 -----WEVTKDMITTFN  342 (379)
Q Consensus       331 -----~~~~~~~i~~~~  342 (379)
                           ...|.+.++.++
T Consensus        79 ~~~~~~syT~~TL~~l~   95 (225)
T cd09286          79 SLQPEWMRTAKVLRHHR   95 (225)
T ss_pred             ccCCccccHHHHHHHHH
Confidence                 223556666553

Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.

>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase

Probab=97.60  E-value=0.00039  Score=66.13  Aligned_cols=96  Identities=16%  Similarity=0.274  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcCccccCChHHHHHHHHHHhcC--C-EEEEEEecCcc-hhccCCCCCCCCCHHHHHHHHH-HccCcCceEe
Q 016998          253 GPNARVVYIDGAFDLFHAGHVEILKKARQLG--D-FLLVGIYTDQI-VSEHRGSYHPIMHLHERSLSVL-ACRYVDEVII  327 (379)
Q Consensus       253 ~~~~~~v~~~G~FDl~H~GHi~~L~~A~~~g--d-~liVgv~~D~~-v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii  327 (379)
                      .....+.+.+|+|||.|.||+.+.+.|++.-  | ..+|++.--.. ....|   ....+.++|+.|++ ++..-+.+.+
T Consensus        19 ~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k---~~~~~~~~Rl~Ml~lai~~~~~~~V   95 (236)
T PLN02945         19 PRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKK---KGLASAEHRIQMCQLACEDSDFIMV   95 (236)
T ss_pred             CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCccccc---CCCCCHHHHHHHHHHHhcCCCCeEe
Confidence            3446778889999999999999999887643  3 33444321111 11122   25679999999984 6665444443


Q ss_pred             C-----CC-CCchHHHHHHc----C-------Cc---EEEEcCC
Q 016998          328 G-----AP-WEVTKDMITTF----N-------IC---LVVHGTV  351 (379)
Q Consensus       328 ~-----~~-~~~~~~~i~~~----~-------~d---~vv~G~d  351 (379)
                      .     -+ ...|.+.++.+    .       ++   +++.|.|
T Consensus        96 ~~~E~~~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D  139 (236)
T PLN02945         96 DPWEARQSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSD  139 (236)
T ss_pred             cHHHhCCCCCccHHHHHHHHHHHhccccccCCCCceEEEEechh
Confidence            2     11 23455665333    1       33   5888976

>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]

Probab=97.59  E-value=0.0012  Score=64.11  Aligned_cols=135  Identities=19%  Similarity=0.171  Sum_probs=91.3

Q ss_pred             CCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-C---------ccccE
Q 016998           62 KKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-L---------KWVDE  131 (379)
Q Consensus        62 ~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~---------~~VD~  131 (379)
                      ....++.-+..+-.++.+||+.|++||.+.||.|.+=+.+++       ...++.++|.++++. .         .+-|+
T Consensus       142 ~~gkkIgaIVMNANPFTLGH~YLVEqAaaqcDwlHLFvV~eD-------~S~f~y~~R~~Lv~~G~~~l~Nvt~HsgsdY  214 (352)
T COG3053         142 HPGKKIGAIVMNANPFTLGHRYLVEQAAAQCDWLHLFVVKED-------SSLFPYEDRLDLVKKGTADLPNVTVHSGSDY  214 (352)
T ss_pred             cCCCeeEEEEEeCCCccchhHHHHHHHHhhCCEEEEEEEecc-------cccCCHHHHHHHHHHhhccCCceEEecCCCe
Confidence            344568888899999999999999999999998766555543       357899999999973 1         24566


Q ss_pred             EEeCCCcc--cc-H--------------HHHHHHhhccCccEEEEcCCCCCCCCCc---hHHHHHHhCC------eEEEe
Q 016998          132 VIANAPYA--IT-E--------------QFMNRLFNEHKIDYIIHGDDPCLLPDGT---DAYALAKKVG------RYKQI  185 (379)
Q Consensus       132 Vv~~~p~~--~t-~--------------efl~~ll~~~~~d~VV~GdD~~~g~~g~---~~y~~lk~~g------~~~~v  185 (379)
                      +|..+.|.  |- +              -|-+.+...+++..-.+|..+..-....   ..-.+|...+      +++++
T Consensus       215 iISrATFP~YFiKeq~vv~~s~t~iDl~iFr~~iA~aLgIThRfVG~EP~c~vT~~YNq~M~~~L~~~~~~~p~I~vvei  294 (352)
T COG3053         215 IISRATFPAYFIKEQSVVNDSQTEIDLKIFRKYIAPALGITHRFVGTEPFCRVTAIYNQQMRYWLEDPTISAPPIEVVEI  294 (352)
T ss_pred             EEEecccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcceeeecCCCCcHHHHHHHHHHHHHHhccCCCCCceEEEEe
Confidence            66655442  11 0              1222244568899999998874422211   1122444433      46788


Q ss_pred             ccC----CCCCHHHHHHHHHhc
Q 016998          186 KRT----EGVSSTDIVGRILSS  203 (379)
Q Consensus       186 ~r~----~~VSST~Ir~rI~~~  203 (379)
                      +|.    ..||.|..|+.+.+.
T Consensus       295 ~Rk~~~~~~ISAS~VR~~l~~~  316 (352)
T COG3053         295 ERKKYQEMPISASRVRQLLAKN  316 (352)
T ss_pred             ehhhhcCCcccHHHHHHHHHhC
Confidence            883    479999999999743

>PRK13670 hypothetical protein; Provisional

Probab=97.59  E-value=0.00025  Score=72.25  Aligned_cols=87  Identities=21%  Similarity=0.289  Sum_probs=62.8

Q ss_pred             cCccccCChHHHHHHHHHHhcCC-EEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCC---CchHH-
Q 016998          262 DGAFDLFHAGHVEILKKARQLGD-FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPW---EVTKD-  336 (379)
Q Consensus       262 ~G~FDl~H~GHi~~L~~A~~~gd-~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~---~~~~~-  336 (379)
                      -=-||+||.||..+|++|++... .++++|-+-..+.+  |. .++++..+|+.+++.+ .||.|+.-+..   ....+ 
T Consensus         7 IaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qr--g~-p~i~~~~~R~~~a~~~-GvD~vielpf~~a~~sae~F   82 (388)
T PRK13670          7 IVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQR--GE-PAIVDKWTRAKMALEN-GVDLVVELPFLYSVQSADFF   82 (388)
T ss_pred             EeeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCC--CC-CCCCCHHHHHHHHHHc-CCCEEEEeCCchHhCCHHHH
Confidence            34599999999999999997542 34455556656544  44 3599999999999887 59988875431   12233 


Q ss_pred             ------HHHHcCCcEEEEcCCC
Q 016998          337 ------MITTFNICLVVHGTVS  352 (379)
Q Consensus       337 ------~i~~~~~d~vv~G~d~  352 (379)
                            ++..++++.+|.|.|.
T Consensus        83 ~~~aV~iL~~l~v~~lv~G~e~  104 (388)
T PRK13670         83 AEGAVSILDALGVDSLVFGSES  104 (388)
T ss_pred             HHhHHHHHHHcCCCEEEEcCCC
Confidence                  4455899999999883

>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function

Probab=97.41  E-value=0.00021  Score=72.76  Aligned_cols=93  Identities=26%  Similarity=0.422  Sum_probs=38.6

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCC-CCCCCHHHHHHHHhcCccccEEEeCCCcccc-
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSGLKWVDEVIANAPYAIT-  141 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t-  141 (379)
                      +.+-++-=|.++|.||...|++||+..  | .+|.|-|-..+  ..| |-+++--.|.++.-.+ ++|.|++ -|+.++ 
T Consensus         2 k~~GIIaEYNPFHnGH~y~i~~~k~~~~ad-~ii~vMSGnFv--QRGEPAi~dKw~RA~~AL~~-GaDLViE-LP~~~a~   76 (388)
T PF05636_consen    2 KVVGIIAEYNPFHNGHLYQIEQAKKITGAD-VIIAVMSGNFV--QRGEPAIIDKWTRAEMALKN-GADLVIE-LPVVYAL   76 (388)
T ss_dssp             -----E---TT--HHHHHHHHHHH---TSS-EEEEEE--TTS--BTSSB-SS-HHHHHHHHHHH-T-SEEEE----G---
T ss_pred             CCCCeEEeECCccHHHHHHHHHHhccCCCC-EEEEEECCCcc--cCCCeeeCCHHHHHHHHHHc-CCCEEEE-CCCcccc
Confidence            344455569999999999999999863  5 45556665544  345 7799999999998776 8999997 565544 


Q ss_pred             ---HHHHH---HHhhccCccEEEEcCCC
Q 016998          142 ---EQFMN---RLFNEHKIDYIIHGDDP  163 (379)
Q Consensus       142 ---~efl~---~ll~~~~~d~VV~GdD~  163 (379)
                         +.|..   .++.++++|+++.|...
T Consensus        77 qsA~~FA~gaV~lL~~lgvd~l~FGsE~  104 (388)
T PF05636_consen   77 QSAEYFARGAVSLLNALGVDYLSFGSES  104 (388)
T ss_dssp             ----------------------------
T ss_pred             cccccccccccccccccccccccccccc
Confidence               24433   37788899999999753

; PDB: 3GMI_A.

>COG0196 RibF FAD synthase [Coenzyme metabolism]

Probab=97.36  E-value=0.0011  Score=65.35  Aligned_cols=114  Identities=20%  Similarity=0.198  Sum_probs=75.9

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCC--EE-EEEEecCcchhccCCC---CCCCCCHHHHHHHHHHccCcCceEeCC
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGD--FL-LVGIYTDQIVSEHRGS---YHPIMHLHERSLSVLACRYVDEVIIGA  329 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd--~l-iVgv~~D~~v~~~Kg~---~~pi~~~~eR~~~v~~~~~Vd~Vii~~  329 (379)
                      ...|++-|.||-+|.||-.+|++|++.+.  .+ .+.++-++--.+...+   ..-+++++||...+..+. ||.+++..
T Consensus        15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~g-vd~~~v~~   93 (304)
T COG0196          15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGYG-VDALVVLD   93 (304)
T ss_pred             CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhcC-CcEEEEEe
Confidence            45688999999999999999998885542  11 3333333222222111   122899999999999996 88877743


Q ss_pred             CC-----CchHHHHH----HcCCcEEEEcCCCCCCC------------CCCCCceEEEEeeec
Q 016998          330 PW-----EVTKDMIT----TFNICLVVHGTVSETNT------------PLTVSLQFLYLPLIN  371 (379)
Q Consensus       330 ~~-----~~~~~~i~----~~~~d~vv~G~d~~~~~------------~l~~~~evv~lp~~~  371 (379)
                      ..     -...+|++    .+++..+|-|.|+-..+            ..+ +.+|+.+|-..
T Consensus        94 F~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~FGk~~~g~~~~L~~~~~~-gf~v~~v~~~~  155 (304)
T COG0196          94 FDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKGRQGNAELLRELGQK-GFEVTIVPKIN  155 (304)
T ss_pred             CCHhHhhCCHHHHHHHHHhccCCcEEEEecccccCCCCCCCHHHHHHhccC-CceEEEeccEe
Confidence            21     23445555    88999999998876431            122 67888887654

>COG1323 Predicted nucleotidyltransferase [General function prediction only]

Probab=97.33  E-value=0.00063  Score=68.30  Aligned_cols=89  Identities=21%  Similarity=0.309  Sum_probs=63.1

Q ss_pred             EecccCcCCHHHHHHHHHHHHc-CCeEEEEEccchhhhccCC-CCCCCHHHHHHHHhcCccccEEEeCCCccccH---HH
Q 016998           70 MDGCFDLMHYGHANALRQAKAL-GDELVVGVVSDEEIIANKG-PPVLSMEERLALVSGLKWVDEVIANAPYAITE---QF  144 (379)
Q Consensus        70 ~~G~FD~lH~GH~~lL~qA~~~-~d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~---ef  144 (379)
                      .+--||++|.||+.+|++|+++ .+..++.+-+-...  ..+ +.+.+..+|.++..+. ++|.|++ .|+.++-   ++
T Consensus         6 ii~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgdf~--qRgepai~~k~~r~~~aL~~-g~D~VIe-lP~~~s~q~a~~   81 (358)
T COG1323           6 IIAEYNPFHNGHQYHINKAREEFKGDEIIAVMSGDFT--QRGEPAIGHKWERKKMALEG-GADLVIE-LPLERSGQGAPY   81 (358)
T ss_pred             eeeecCcccccHHHHHHHHHHhccCCceEEeeecchh--hcCCCccccHHHHHhhhhhc-CceEEEE-cceEEecCCCch
Confidence            3445999999999999999984 33344444444433  233 7899999999999885 8999998 5665442   22


Q ss_pred             H-H---HHhhccCccEEEEcCC
Q 016998          145 M-N---RLFNEHKIDYIIHGDD  162 (379)
Q Consensus       145 l-~---~ll~~~~~d~VV~GdD  162 (379)
                      . .   .++..+++|.|+.|..
T Consensus        82 fa~~av~il~~l~~~~i~fgse  103 (358)
T COG1323          82 FATRAVRILNALGGDDIAFGSP  103 (358)
T ss_pred             hhHHHHHHHHhcCCCeEEEeCC
Confidence            2 1   2556788888888754

>TIGR00339 sopT ATP sulphurylase

Probab=96.96  E-value=0.0073  Score=61.53  Aligned_cols=93  Identities=19%  Similarity=0.175  Sum_probs=62.6

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHc--CCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCcc-c---cEE-EeCCCc
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW-V---DEV-IANAPY  138 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~--~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~-V---D~V-v~~~p~  138 (379)
                      ++|+..=+||++|.||..++++|.+.  +|.|++-+.--    ..| +-.++.+-|+++++.+.- .   +.+ +.-.|+
T Consensus       184 ~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g----~~k-~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~  258 (383)
T TIGR00339       184 DTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVG----LTK-PGDIPAEVRMRAYEVLKEGYPNPERVMLTFLPL  258 (383)
T ss_pred             CeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCC----CCC-CCCCCHHHHHHHHHHHHhhCCCCCceEEEecch
Confidence            46888999999999999999999997  67666654432    223 367889999999986411 1   111 222233


Q ss_pred             ccc----HHHHHH--HhhccCccEEEEcCCC
Q 016998          139 AIT----EQFMNR--LFNEHKIDYIIHGDDP  163 (379)
Q Consensus       139 ~~t----~efl~~--ll~~~~~d~VV~GdD~  163 (379)
                      ++.    .+.+..  +-+.|++.++++|.|.
T Consensus       259 em~~agpreall~Aiir~nyG~th~IiG~Dh  289 (383)
T TIGR00339       259 AMRYAGPREAIWHAIIRKNYGATHFIVGRDH  289 (383)
T ss_pred             HhhcCCcHHHHHHHHHHHHCCCCEEEECCCC
Confidence            222    144433  3356899999999986

Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.

>COG1323 Predicted nucleotidyltransferase [General function prediction only]

Probab=96.65  E-value=0.0052  Score=61.79  Aligned_cols=84  Identities=25%  Similarity=0.277  Sum_probs=63.5

Q ss_pred             ccccCChHHHHHHHHHHhc--CCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCC----------C
Q 016998          264 AFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAP----------W  331 (379)
Q Consensus       264 ~FDl~H~GHi~~L~~A~~~--gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~----------~  331 (379)
                      .||+||.||..+|++|+++  +|..++++..| .+.  .|. .++.+-.||..+.+++ -+|.||..+-          .
T Consensus         9 eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgd-f~q--Rge-pai~~k~~r~~~aL~~-g~D~VIelP~~~s~q~a~~fa   83 (358)
T COG1323           9 EYNPFHNGHQYHINKAREEFKGDEIIAVMSGD-FTQ--RGE-PAIGHKWERKKMALEG-GADLVIELPLERSGQGAPYFA   83 (358)
T ss_pred             ecCcccccHHHHHHHHHHhccCCceEEeeecc-hhh--cCC-CccccHHHHHhhhhhc-CceEEEEcceEEecCCCchhh
Confidence            4999999999999999973  46667777666 544  344 5799999999999887 4788887432          1


Q ss_pred             CchHHHHHHcCCcEEEEcCCC
Q 016998          332 EVTKDMITTFNICLVVHGTVS  352 (379)
Q Consensus       332 ~~~~~~i~~~~~d~vv~G~d~  352 (379)
                      .-....+.++++|.++.|+..
T Consensus        84 ~~av~il~~l~~~~i~fgse~  104 (358)
T COG1323          84 TRAVRILNALGGDDIAFGSPP  104 (358)
T ss_pred             HHHHHHHHhcCCCeEEEeCCC
Confidence            123567778899999999654

>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6

Probab=96.61  E-value=0.0063  Score=55.39  Aligned_cols=99  Identities=14%  Similarity=0.205  Sum_probs=72.1

Q ss_pred             cccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHH-HHccCcCceEeCCC--CCch-------
Q 016998          265 FDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDEVIIGAP--WEVT-------  334 (379)
Q Consensus       265 FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v-~~~~~Vd~Vii~~~--~~~~-------  334 (379)
                      -.||+.||.-++++|.+.+|.|.|=|-+++         +..+++++|..+| +.++..++|.+-+.  +-++       
T Consensus         8 aNPFT~GH~yLiE~Aa~~~d~l~vFVV~eD---------~S~Fpf~~R~~LVk~G~~~L~NV~V~~~g~YiIS~aTFPsY   78 (182)
T PF08218_consen    8 ANPFTLGHRYLIEQAAKECDWLHVFVVSED---------RSLFPFADRYELVKEGTADLPNVTVHPGGDYIISSATFPSY   78 (182)
T ss_pred             CCCCccHHHHHHHHHHHhCCEEEEEEEccc---------cCcCCHHHHHHHHHHHhCcCCCEEEEcCCCeeeecccChhh
Confidence            468999999999999999999988887653         4799999999877 66788888877322  1100       


Q ss_pred             -----H----------------HHHHHcCCcEEEEcCCCCCC----------CCCC-CCceEEEEeeecc
Q 016998          335 -----K----------------DMITTFNICLVVHGTVSETN----------TPLT-VSLQFLYLPLINY  372 (379)
Q Consensus       335 -----~----------------~~i~~~~~d~vv~G~d~~~~----------~~l~-~~~evv~lp~~~~  372 (379)
                           .                -+...++|..-..|++.-..          +.|+ .|++++.+|+...
T Consensus        79 FlK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~vT~~YN~~M~~~Lp~~gi~v~ei~R~~~  148 (182)
T PF08218_consen   79 FLKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPVTRIYNEAMKEILPPYGIEVVEIPRKEI  148 (182)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHHHHHHHHHHHHhccccCCEEEEEecccC
Confidence                 0                13344577777778765443          2344 5799999999854

2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity

>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function

Probab=96.37  E-value=0.0064  Score=62.08  Aligned_cols=85  Identities=21%  Similarity=0.404  Sum_probs=37.9

Q ss_pred             ccccCChHHHHHHHHHHhc-C-CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCC-C---------
Q 016998          264 AFDLFHAGHVEILKKARQL-G-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAP-W---------  331 (379)
Q Consensus       264 ~FDl~H~GHi~~L~~A~~~-g-d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~-~---------  331 (379)
                      -|.|||.||.-+|++||+. + |. ||+|-|-.++.  +|. ..+++--+|+.+.+.+ .||-|+--+. +         
T Consensus         9 EYNPFHnGH~y~i~~~k~~~~ad~-ii~vMSGnFvQ--RGE-PAi~dKw~RA~~AL~~-GaDLViELP~~~a~qsA~~FA   83 (388)
T PF05636_consen    9 EYNPFHNGHLYQIEQAKKITGADV-IIAVMSGNFVQ--RGE-PAIIDKWTRAEMALKN-GADLVIELPVVYALQSAEYFA   83 (388)
T ss_dssp             --TT--HHHHHHHHHHH---TSSE-EEEEE--TTSB--TSS-B-SS-HHHHHHHHHHH-T-SEEEE---G----------
T ss_pred             eECCccHHHHHHHHHHhccCCCCE-EEEEECCCccc--CCC-eeeCCHHHHHHHHHHc-CCCEEEECCCccccccccccc
Confidence            4899999999999999975 3 65 44555555765  465 5799999999988887 4887776321 1         


Q ss_pred             CchHHHHHHcCCcEEEEcCCCC
Q 016998          332 EVTKDMITTFNICLVVHGTVSE  353 (379)
Q Consensus       332 ~~~~~~i~~~~~d~vv~G~d~~  353 (379)
                      .-...++.+.++|.++-|++..
T Consensus        84 ~gaV~lL~~lgvd~l~FGsE~~  105 (388)
T PF05636_consen   84 RGAVSLLNALGVDYLSFGSESG  105 (388)
T ss_dssp             ----------------------
T ss_pred             cccccccccccccccccccccc
Confidence            1124677888999999997653

; PDB: 3GMI_A.

>TIGR00018 panC pantoate--beta-alanine ligase

Probab=95.70  E-value=0.029  Score=54.89  Aligned_cols=66  Identities=21%  Similarity=0.226  Sum_probs=48.4

Q ss_pred             EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhcc-CCCCCCCCCHHHHHHHHHHccCcCceEeC
Q 016998          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEH-RGSYHPIMHLHERSLSVLACRYVDEVIIG  328 (379)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~-Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~  328 (379)
                      |.+-|.   +|.||..++++|++.+|.++|.+..+..--.. .....-++++++|...++++ .||.++..
T Consensus        27 VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~P   93 (282)
T TIGR00018        27 VPTMGN---LHDGHMSLIDRAVAENDVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL-GVDVVFAP   93 (282)
T ss_pred             EECCCc---ccHHHHHHHHHHHHhCCeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc-CCCEEECC
Confidence            445576   99999999999999999999999877432111 11113467999999988887 57766653

This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.

>PRK00380 panC pantoate--beta-alanine ligase; Reviewed

Probab=95.54  E-value=0.046  Score=53.48  Aligned_cols=72  Identities=19%  Similarity=0.265  Sum_probs=51.3

Q ss_pred             CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhcc-CCCCCCCCCHHHHHHHHHHccCcCceEeC
Q 016998          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEH-RGSYHPIMHLHERSLSVLACRYVDEVIIG  328 (379)
Q Consensus       255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~-Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~  328 (379)
                      +++++++. +..-+|.||..++++|++.++.++|.+..+..--.. .....-+.++++|...++++ .||.+++.
T Consensus        21 ~~~i~~v~-tmG~lH~GH~~Li~~a~~~a~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~-GvD~v~~p   93 (281)
T PRK00380         21 GKRIGLVP-TMGALHEGHLSLVREARAEADIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA-GVDLVFAP   93 (281)
T ss_pred             CCeEEEEE-ccCceeHHHHHHHHHHHHhCCEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc-CCCEEEeC
Confidence            45565554 444499999999999999999999999877432111 11113467899999988887 58877764

>PLN02660 pantoate--beta-alanine ligase

Probab=95.43  E-value=0.05  Score=53.30  Aligned_cols=66  Identities=23%  Similarity=0.218  Sum_probs=48.7

Q ss_pred             EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhcc-CCCCCCCCCHHHHHHHHHHccCcCceEeC
Q 016998          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEH-RGSYHPIMHLHERSLSVLACRYVDEVIIG  328 (379)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~-Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~  328 (379)
                      |.+-|.   +|.||..++++|++.+|.++|.+..+..--.. ....+..+++++|...++++ .||.++..
T Consensus        26 VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~P   92 (284)
T PLN02660         26 VPTMGY---LHEGHLSLVRAARARADVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL-GVDAVFNP   92 (284)
T ss_pred             EEcCch---hhHHHHHHHHHHHHhCCEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc-CCCEEECC
Confidence            455566   99999999999999999999999877543111 11123467999999988887 57877653

>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]

Probab=94.75  E-value=0.11  Score=50.95  Aligned_cols=111  Identities=14%  Similarity=0.163  Sum_probs=78.9

Q ss_pred             CCCCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHH-HHccCcCceEeC--C
Q 016998          253 GPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDEVIIG--A  329 (379)
Q Consensus       253 ~~~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v-~~~~~Vd~Vii~--~  329 (379)
                      .++++|.-+--.-.||+.||--++++|.+.+|.|-+=|.+++         ...++.++|..++ +..++.++|.+-  .
T Consensus       142 ~~gkkIgaIVMNANPFTLGH~YLVEqAaaqcDwlHLFvV~eD---------~S~f~y~~R~~Lv~~G~~~l~Nvt~Hsgs  212 (352)
T COG3053         142 HPGKKIGAIVMNANPFTLGHRYLVEQAAAQCDWLHLFVVKED---------SSLFPYEDRLDLVKKGTADLPNVTVHSGS  212 (352)
T ss_pred             cCCCeeEEEEEeCCCccchhHHHHHHHHhhCCEEEEEEEecc---------cccCCHHHHHHHHHHhhccCCceEEecCC
Confidence            356788888888999999999999999999999987777663         4688999999655 677888877652  1


Q ss_pred             CCCch----------------------------HHHHHHcCCcEEEEcCCCCCC----------CC------CCCCceEE
Q 016998          330 PWEVT----------------------------KDMITTFNICLVVHGTVSETN----------TP------LTVSLQFL  365 (379)
Q Consensus       330 ~~~~~----------------------------~~~i~~~~~d~vv~G~d~~~~----------~~------l~~~~evv  365 (379)
                      ++-++                            .-+...++|.--..|++....          .+      -.+-++++
T Consensus       213 dYiISrATFP~YFiKeq~vv~~s~t~iDl~iFr~~iA~aLgIThRfVG~EP~c~vT~~YNq~M~~~L~~~~~~~p~I~vv  292 (352)
T COG3053         213 DYIISRATFPAYFIKEQSVVNDSQTEIDLKIFRKYIAPALGITHRFVGTEPFCRVTAIYNQQMRYWLEDPTISAPPIEVV  292 (352)
T ss_pred             CeEEEecccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcceeeecCCCCcHHHHHHHHHHHHHHhccCCCCCceEEE
Confidence            11110                            113445577777778765433          12      22359999


Q ss_pred             EEeeecc
Q 016998          366 YLPLINY  372 (379)
Q Consensus       366 ~lp~~~~  372 (379)
                      .+|+...
T Consensus       293 ei~Rk~~  299 (352)
T COG3053         293 EIERKKY  299 (352)
T ss_pred             Eeehhhh
Confidence            9998654

>cd00560 PanC Pantoate-beta-alanine ligase

Probab=94.52  E-value=0.11  Score=50.81  Aligned_cols=88  Identities=19%  Similarity=0.251  Sum_probs=56.7

Q ss_pred             EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhcc-CCCCCCCCCHHHHHHHHHHccCcCceEeCC-----CCC
Q 016998          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEH-RGSYHPIMHLHERSLSVLACRYVDEVIIGA-----PWE  332 (379)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~-Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~-----~~~  332 (379)
                      |.+-|.   +|.||..++++|++.+|.++|.+..+..--.. .....-+.+++++...++++ .||.++...     |.+
T Consensus        27 V~TmG~---LH~GH~~LI~~a~~~a~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~-GvD~vF~p~~~~m~p~~  102 (277)
T cd00560          27 VPTMGA---LHEGHLSLVRRARAENDVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA-GVDLLFAPSVEEMYPEG  102 (277)
T ss_pred             EECCCc---ccHHHHHHHHHHHHhCCEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC-CCCEEECCCHHHcCCCC
Confidence            445566   99999999999999999999999877543111 11113467899999988887 578774321     122


Q ss_pred             chHHHHHHcCCcEEEEcC
Q 016998          333 VTKDMITTFNICLVVHGT  350 (379)
Q Consensus       333 ~~~~~i~~~~~d~vv~G~  350 (379)
                      ...-++...++..++.|.
T Consensus       103 f~~~~v~~~~~~~il~G~  120 (277)
T cd00560         103 LFSTFVDVGPLSEVLEGA  120 (277)
T ss_pred             CceEEEecCCCceEEecC
Confidence            111112234566667776

PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.

>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []

Probab=94.45  E-value=0.1  Score=51.02  Aligned_cols=66  Identities=24%  Similarity=0.308  Sum_probs=39.7

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCC---CCCCCHHHHHHHHhcCccccEEEe
Q 016998           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG---PPVLSMEERLALVSGLKWVDEVIA  134 (379)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~---~pi~t~eER~~~l~~~~~VD~Vv~  134 (379)
                      +-+..+-=-+|-||+.|+++|++.+|.++|.+.-+|.=...+.   ...-+.+.=.++++.. +||.++.
T Consensus        24 igfVPTMGaLHeGHlsLi~~A~~~~d~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~-gvD~vF~   92 (280)
T PF02569_consen   24 IGFVPTMGALHEGHLSLIRRARAENDVVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKA-GVDAVFA   92 (280)
T ss_dssp             EEEEEE-SS--HHHHHHHHHHHHHSSEEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHT-T-SEEE-
T ss_pred             EEEECCCchhhHHHHHHHHHHHhCCCEEEEEECcCcccCCCcchhhhCCCChHHHHHHHhcc-CCCEEEc
Confidence            4444555567999999999999999999998876664211111   2334567777888876 8998875

Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=94.00  E-value=0.16  Score=53.83  Aligned_cols=68  Identities=19%  Similarity=0.244  Sum_probs=50.3

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchh-hhccCC--CCCCCHHHHHHHHhcCccccEEEeC
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEE-IIANKG--PPVLSMEERLALVSGLKWVDEVIAN  135 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~-i~~~K~--~pi~t~eER~~~l~~~~~VD~Vv~~  135 (379)
                      ++-+.-+-=.+|-||+.|+++|++.+|.++|.+.-+|. ......  ...-++++=.++++.. +||.|+..
T Consensus        21 ~ig~VPTMG~LH~GHlsLi~~A~~~~d~vVvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~-gvd~vf~P   91 (512)
T PRK13477         21 TIGFVPTMGALHQGHLSLIRRARQENDVVLVSIFVNPLQFGPNEDLERYPRTLEADRELCESA-GVDAIFAP   91 (512)
T ss_pred             cEEEECCCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCCCchhhhhCCCCHHHHHHHHHhc-CCCEEECC
Confidence            57777778889999999999999999999988855543 111111  2234678888888886 89988753

>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]

Probab=93.94  E-value=0.2  Score=48.72  Aligned_cols=74  Identities=27%  Similarity=0.262  Sum_probs=47.2

Q ss_pred             cccCCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhh-ccCC--CCCCCHHHHHHHHhcCccccEEEe
Q 016998           58 KKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (379)
Q Consensus        58 ~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~-~~K~--~pi~t~eER~~~l~~~~~VD~Vv~  134 (379)
                      .|+++++  +|-..=+--.+|-||+.|+++|++.+|.++|.+.-+|.=. ++..  ..--++++=.++++.. +||.++.
T Consensus        16 ~~r~~gk--~Vg~VPTMG~LH~GHlsLVr~A~~~~d~VVVSIFVNP~QFg~~EDl~~YPR~l~~D~~~le~~-gvd~vF~   92 (285)
T COG0414          16 ALRKEGK--RVGLVPTMGNLHEGHLSLVRRAKKENDVVVVSIFVNPLQFGPNEDLDRYPRTLERDLELLEKE-GVDIVFA   92 (285)
T ss_pred             HHHHcCC--EEEEEcCCcccchHHHHHHHHHhhcCCeEEEEEEeChhhcCCchhhhhCCCCHHHHHHHHHhc-CCcEEeC
Confidence            4555443  5666667778999999999999999998888877655411 1111  1123345555555553 6776664

>PRK04149 sat sulfate adenylyltransferase; Reviewed

Probab=93.71  E-value=1.9  Score=44.21  Aligned_cols=94  Identities=18%  Similarity=0.134  Sum_probs=61.0

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCcc----ccEEEe-CCCcc
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW----VDEVIA-NAPYA  139 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~----VD~Vv~-~~p~~  139 (379)
                      -++|+..=+-+++|.||..+++.|.+.+|-|++  ++  .+ ..+++-=++.+-|++..+.+.-    -+.++. ..|..
T Consensus       186 w~~VvafqTrnP~HraHe~l~~~a~e~~d~lll--~p--lv-G~~k~~di~~~~r~~~~~~~~~~y~p~~~v~l~~lp~~  260 (391)
T PRK04149        186 WKTVVAFQTRNPPHRAHEYLQKCALEIVDGLLL--NP--LV-GETKSGDIPAEVRMEAYEALLKNYYPKDRVLLSVTPAA  260 (391)
T ss_pred             CCeEEEeecCCCCchHHHHHHHHHHHhcCeEEE--ec--Cc-CCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeccch
Confidence            347888899999999999999999999984444  22  11 1122345778889888877411    112222 12221


Q ss_pred             -----ccHHHHHHHh-hccCccEEEEcCCC
Q 016998          140 -----ITEQFMNRLF-NEHKIDYIIHGDDP  163 (379)
Q Consensus       140 -----~t~efl~~ll-~~~~~d~VV~GdD~  163 (379)
                           ..+..+..++ +.++|.++++|-|.
T Consensus       261 mryAGPrEa~lhAivrkN~GcTh~IvGrDH  290 (391)
T PRK04149        261 MRYAGPREAIFHAIVRKNYGCTHFIVGRDH  290 (391)
T ss_pred             hcccCcHHHHHHHHHHHhCCCCeEEECCCC
Confidence                 1134455555 45999999999986

>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]

Probab=92.99  E-value=1.4  Score=44.62  Aligned_cols=95  Identities=20%  Similarity=0.218  Sum_probs=61.3

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC---cc-ccEEEeC-CCcc
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL---KW-VDEVIAN-APYA  139 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~---~~-VD~Vv~~-~p~~  139 (379)
                      -++|++.=+++++|.||-.+.+.|.+.+|.|+|-..    + ..+++-=.+.+-|++..+.+   .+ =|.++.. .|+.
T Consensus       183 wk~vvafQTRNp~HraHEyl~K~Al~~vdgllv~pl----V-G~tk~gD~~~e~rm~~ye~l~~~Yyp~dr~~Ls~~~~a  257 (397)
T COG2046         183 WKTVVAFQTRNPPHRAHEYLQKRALEKVDGLLVHPL----V-GATKPGDIPDEVRMEYYEALLKHYYPPDRVFLSVLPAA  257 (397)
T ss_pred             CeEEEEEecCCCchHHHHHHHHHHHHhcCcEEEEee----e-ccccCCCchHHHHHHHHHHHHHhCCCCCcEEEEecHHH
Confidence            458999999999999999999999999996544322    1 11222334566676665542   12 3445442 2222


Q ss_pred             cc-----HHHHHHHh-hccCccEEEEcCCCC
Q 016998          140 IT-----EQFMNRLF-NEHKIDYIIHGDDPC  164 (379)
Q Consensus       140 ~t-----~efl~~ll-~~~~~d~VV~GdD~~  164 (379)
                      ..     +.-+..++ +.++|.+.++|-|..
T Consensus       258 MRyagPrEa~~HaIIRkNyGcTHfIVGRDHA  288 (397)
T COG2046         258 MRYAGPREALLHAIIRKNYGCTHFIVGRDHA  288 (397)
T ss_pred             hhhcCcHHHHHHHHHHhhcCCeeeeecCCCC
Confidence            11     34445555 459999999999974

>cd00517 ATPS ATP-sulfurylase

Probab=92.73  E-value=1.8  Score=43.76  Aligned_cols=94  Identities=18%  Similarity=0.230  Sum_probs=60.3

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCc--cc--cEEEe-CCCc
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK--WV--DEVIA-NAPY  138 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~--~V--D~Vv~-~~p~  138 (379)
                      ++|+..=+-+++|.||..+++.|.+.+  +.|++-..    + ..+++-=++.+-|++..+.+.  +.  +.++. ..|.
T Consensus       157 ~~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll~pl----v-G~~k~~d~~~~~r~~~~~~l~~~y~~~~~~~l~~lp~  231 (353)
T cd00517         157 RRVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLLHPL----V-GWTKPGDVPDEVRMRAYEALLEEYYLPERTVLAILPL  231 (353)
T ss_pred             CeEEEeecCCCCchhhHHHHHHHHHHcCCCcEEEEec----c-CCCCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            468888999999999999999999977  43433221    1 112234567888888877641  22  33332 2233


Q ss_pred             cc-----cHHHHHHHh-hccCccEEEEcCCCC
Q 016998          139 AI-----TEQFMNRLF-NEHKIDYIIHGDDPC  164 (379)
Q Consensus       139 ~~-----t~efl~~ll-~~~~~d~VV~GdD~~  164 (379)
                      ..     .+..+..++ +.++|.++++|-|..
T Consensus       232 ~mryAGPrEallhAiirkN~GcThfIvGrDHA  263 (353)
T cd00517         232 PMRYAGPREALWHAIIRKNYGATHFIVGRDHA  263 (353)
T ss_pred             hhcccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence            21     134455555 459999999999863

ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be

>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2

Probab=92.41  E-value=0.56  Score=44.21  Aligned_cols=93  Identities=19%  Similarity=0.248  Sum_probs=53.7

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCcc----ccEEEe-CCCcc-
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW----VDEVIA-NAPYA-  139 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~----VD~Vv~-~~p~~-  139 (379)
                      +|+..=+-+++|.||..+++.|.+.+ +.|.+-..    + ..+++--++.+-|++..+.+.-    -+.++. ..|.. 
T Consensus        22 ~VvafqtrnPlHraHe~l~~~a~e~~~~~lll~pl----v-G~~k~~d~~~~~r~~~~~~~~~~y~p~~~v~l~~lp~~m   96 (215)
T PF01747_consen   22 RVVAFQTRNPLHRAHEYLMRRALEKAGDGLLLHPL----V-GPTKPGDIPYEVRVRCYEALIDNYFPKNRVLLSPLPLPM   96 (215)
T ss_dssp             SEEEEEESS---HHHHHHHHHHHHHHTSEEEEEEB----E-SB-STTSCCHHHHHHHHHHHHHHCSSTTGEEEEBBESB-
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHhcCcEEEEec----c-CCCCcCCCCHHHHHHHHHHHHHHhCCCCcEEEeccCchh
Confidence            46777779999999999999999986 65555332    2 1122345678888887775311    122332 12221 


Q ss_pred             -cc---HHHHHHHh-hccCccEEEEcCCCC
Q 016998          140 -IT---EQFMNRLF-NEHKIDYIIHGDDPC  164 (379)
Q Consensus       140 -~t---~efl~~ll-~~~~~d~VV~GdD~~  164 (379)
                       +.   +.-+..++ +.++|.++++|.|..
T Consensus        97 r~aGPrEallhAiirkN~GcTh~IvGrdhA  126 (215)
T PF01747_consen   97 RYAGPREALLHAIIRKNYGCTHFIVGRDHA  126 (215)
T ss_dssp             --SHHHHHHHHHHHHHHTT-SEEEE-TTTT
T ss_pred             cccCcHHHHHHHHHHHHCCCceEEeCCcCC
Confidence             11   24445555 459999999999974

7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=92.02  E-value=0.27  Score=52.08  Aligned_cols=64  Identities=22%  Similarity=0.415  Sum_probs=41.9

Q ss_pred             eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCc-------chhccCCCCCCCCCHHHHHHHHHHccCcCceEeC
Q 016998          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQ-------IVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIG  328 (379)
Q Consensus       257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~-------~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~  328 (379)
                      ++.+++ |-=-+|.||++++++|++.+|.+||.|.-+.       ...+     ||- ++++=+..+++. .||.|+..
T Consensus        21 ~ig~VP-TMG~LH~GHlsLi~~A~~~~d~vVvSIFVNP~QF~~~eD~~~-----YPr-~~~~D~~~l~~~-gvd~vf~P   91 (512)
T PRK13477         21 TIGFVP-TMGALHQGHLSLIRRARQENDVVLVSIFVNPLQFGPNEDLER-----YPR-TLEADRELCESA-GVDAIFAP   91 (512)
T ss_pred             cEEEEC-CCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCCCchhhhh-----CCC-CHHHHHHHHHhc-CCCEEECC
Confidence            444443 4445899999999999999999999996442       2221     444 445444444443 57866653

>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]

Probab=91.95  E-value=2.7  Score=39.43  Aligned_cols=60  Identities=22%  Similarity=0.178  Sum_probs=46.1

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcC----C-eEEEEEccchhhhccCCCCCCCHHHHHHHHhc
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALG----D-ELVVGVVSDEEIIANKGPPVLSMEERLALVSG  125 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~----d-~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~  125 (379)
                      +...++.|+|.++-.+|..+++-|+..-    . +++=|+-| |.-..+|++-+.+.-.|+.|++.
T Consensus         8 ~v~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimS-PV~DaYkKKgLipa~hrv~~~El   72 (234)
T KOG3199|consen    8 PVVLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMS-PVGDAYKKKGLIPAYHRVRMVEL   72 (234)
T ss_pred             eEEEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEec-ccchhhhccccchhhhHHHHHHh
Confidence            4456889999999999999999999852    2 35556554 43345666789999999999985

>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []

Probab=91.42  E-value=0.42  Score=46.75  Aligned_cols=69  Identities=19%  Similarity=0.327  Sum_probs=34.8

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCC--CCCCCCCHHHHHHHHHHccCcCceEe
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRG--SYHPIMHLHERSLSVLACRYVDEVII  327 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg--~~~pi~~~~eR~~~v~~~~~Vd~Vii  327 (379)
                      +++.+++ |-=-+|.||++++++|++.+|.+||.|.-+..=-....  ..||- +++.=+..+++. .||-|+.
T Consensus        22 ~~igfVP-TMGaLHeGHlsLi~~A~~~~d~vVVSIFVNP~QF~~~eD~~~YPR-~~e~D~~ll~~~-gvD~vF~   92 (280)
T PF02569_consen   22 KTIGFVP-TMGALHEGHLSLIRRARAENDVVVVSIFVNPTQFGPNEDFDKYPR-TLERDLELLEKA-GVDAVFA   92 (280)
T ss_dssp             SSEEEEE-E-SS--HHHHHHHHHHHHHSSEEEEEE---GGGSSTTSHTTTS----HHHHHHHHHHT-T-SEEE-
T ss_pred             CeEEEEC-CCchhhHHHHHHHHHHHhCCCEEEEEECcCcccCCCcchhhhCCC-ChHHHHHHHhcc-CCCEEEc
Confidence            4444443 22236999999999999999999999975532111000  01343 444444444443 5886655

Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=91.07  E-value=2.6  Score=45.28  Aligned_cols=96  Identities=15%  Similarity=0.061  Sum_probs=59.9

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCc---cccEEEe-CCCcc-
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK---WVDEVIA-NAPYA-  139 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~---~VD~Vv~-~~p~~-  139 (379)
                      -++|+..=+-+++|.||..+++.|.+.+|.. +-+++  .+-. +.+--++.+-|++..+.+.   --+.++. ..|.. 
T Consensus       186 w~~v~afqtrnP~Hr~He~l~~~a~~~~d~~-lll~p--~~G~-~k~~d~~~~~r~~~~~~~~~~~p~~~~~l~~~p~~m  261 (568)
T PRK05537        186 WRRVVAFQTRNPLHRAHEELTKRAAREVGAN-LLIHP--VVGM-TKPGDIDHFTRVRCYEALLDKYPPATTLLSLLPLAM  261 (568)
T ss_pred             CCcEEEEecCCCCcHHHHHHHHHHHHhcCCe-EEEec--CCCC-CCCCCCCHHHHHHHHHHHHHhCCCCcEEEEeccchh
Confidence            3468889999999999999999999988732 22333  1211 1134567888888777631   1122221 12221 


Q ss_pred             ----ccHHHHHHHh-hccCccEEEEcCCCC
Q 016998          140 ----ITEQFMNRLF-NEHKIDYIIHGDDPC  164 (379)
Q Consensus       140 ----~t~efl~~ll-~~~~~d~VV~GdD~~  164 (379)
                          ..+..+..++ +.++|.++++|-|..
T Consensus       262 ryaGpreai~hAi~r~N~Gcth~ivGrdhA  291 (568)
T PRK05537        262 RMAGPREALWHAIIRRNYGCTHFIVGRDHA  291 (568)
T ss_pred             cccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence                1134455555 459999999998864

>TIGR00339 sopT ATP sulphurylase

Probab=89.81  E-value=4.2  Score=41.61  Aligned_cols=110  Identities=15%  Similarity=0.177  Sum_probs=69.7

Q ss_pred             EEEEcCccccCChHHHHHHHHHHhc--CCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-c-CcC--ceEeC---
Q 016998          258 VVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-R-YVD--EVIIG---  328 (379)
Q Consensus       258 ~v~~~G~FDl~H~GHi~~L~~A~~~--gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~-~Vd--~Vii~---  328 (379)
                      .|+--=+||++|.||..+.+.|.+.  .|.|++-..--    ..|   .-.++.+-|+.+++.+ + |-.  .+++.   
T Consensus       185 ~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g----~~k---~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~  257 (383)
T TIGR00339       185 TVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVG----LTK---PGDIPAEVRMRAYEVLKEGYPNPERVMLTFLP  257 (383)
T ss_pred             eEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCC----CCC---CCCCCHHHHHHHHHHHHhhCCCCCceEEEecc
Confidence            3444788999999999999999987  68665544322    223   2578999999888776 2 322  33221   


Q ss_pred             ------CCCCchHH--HHHHcCCcEEEEcCCCCCC-------------------CC--CCCCceEEEEeeeccee
Q 016998          329 ------APWEVTKD--MITTFNICLVVHGTVSETN-------------------TP--LTVSLQFLYLPLINYCI  374 (379)
Q Consensus       329 ------~~~~~~~~--~i~~~~~d~vv~G~d~~~~-------------------~~--l~~~~evv~lp~~~~~~  374 (379)
                            .|-+....  +.+++++..++-|.|...-                   +.  -+.+++++.++...+|.
T Consensus       258 ~em~~agpreall~Aiir~nyG~th~IiG~Dhag~g~~~~~~~~Y~~~~aq~i~~~~~~~l~I~~v~~~~~~Yc~  332 (383)
T TIGR00339       258 LAMRYAGPREAIWHAIIRKNYGATHFIVGRDHAGPGSNSKGQDFYGPYDAQELFEKYKAELGIKIVPFEHVAYCP  332 (383)
T ss_pred             hHhhcCCcHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCccccCCCcchHHHHHHhCccccCceEEecceeEEEc
Confidence                  12222223  4566789999999663211                   11  24578888887776663

Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.

>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]

Probab=89.11  E-value=0.89  Score=42.80  Aligned_cols=76  Identities=18%  Similarity=0.214  Sum_probs=46.4

Q ss_pred             hhcccCCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhh-ccCC--CCCCCHHHHHHHHhcCccccEE
Q 016998           56 HKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKG--PPVLSMEERLALVSGLKWVDEV  132 (379)
Q Consensus        56 ~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~-~~K~--~pi~t~eER~~~l~~~~~VD~V  132 (379)
                      ...+++..+  ++-..-+---+|-||..|++|+++..++.+|.+.-+|.-. +...  ...-++..-+..++++ +||.|
T Consensus        16 ~~~~R~~g~--tIgfVPTMG~LHeGH~SLvrqs~~~~~~tVVSIfVNP~QF~pteDL~~YPrt~~~D~~~L~~L-gvdvv   92 (283)
T KOG3042|consen   16 TQELRETGE--TIGFVPTMGCLHEGHASLVRQSVKENTYTVVSIFVNPSQFAPTEDLDNYPRTLPDDIKLLESL-GVDVV   92 (283)
T ss_pred             HHHHHhcCC--eEEEecccccccccHHHHHHHHHhhCceEEEEEEechhhcCChhHhhcCCccCccHHHHHHhc-CceEE
Confidence            344455432  3333344555899999999999999998888776655421 1111  1122344556667777 77766


Q ss_pred             Ee
Q 016998          133 IA  134 (379)
Q Consensus       133 v~  134 (379)
                      +.
T Consensus        93 fa   94 (283)
T KOG3042|consen   93 FA   94 (283)
T ss_pred             Ec
Confidence            63

>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]

Probab=88.75  E-value=0.44  Score=46.32  Aligned_cols=39  Identities=23%  Similarity=0.570  Sum_probs=31.7

Q ss_pred             CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCc
Q 016998          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQ  294 (379)
Q Consensus       255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~  294 (379)
                      ++++.+++ +---+|.||++++++|++..|.+||.|.-+.
T Consensus        21 gk~Vg~VP-TMG~LH~GHlsLVr~A~~~~d~VVVSIFVNP   59 (285)
T COG0414          21 GKRVGLVP-TMGNLHEGHLSLVRRAKKENDVVVVSIFVNP   59 (285)
T ss_pred             CCEEEEEc-CCcccchHHHHHHHHHhhcCCeEEEEEEeCh
Confidence            45556554 4556999999999999999999999998653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	379
3elb_A	341	Human Ctp: Phosphoethanolamine Cytidylyltransferase		1e-72
3elb_A	341	Human Ctp: Phosphoethanolamine Cytidylyltransferase		2e-14
3hl4_A	236	Crystal Structure Of A Mammalian Ctp:phosphocholine		6e-24
3hl4_A	236	Crystal Structure Of A Mammalian Ctp:phosphocholine		2e-14
1coz_A	129	Ctp:glycerol-3-Phosphate Cytidylyltransferase From		3e-13
2b7l_A	132	Crystal Structure Of Ctp:glycerol-3-Phosphate Cytid		7e-11
3glv_A	143	Crystal Structure Of The Lipopolysaccharide Core Bi		1e-09
3glv_A	143	Crystal Structure Of The Lipopolysaccharide Core Bi		7e-04

>pdb|3ELB|A Chain A, Human Ctp: Phosphoethanolamine Cytidylyltransferase In Complex With Cmp Length = 341

Iteration: 1
 Score =  270 bits (689), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 137/297 (46%), Positives = 198/297 (66%), Gaps = 24/297 (8%)
Query: 66  VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
           VRV+ DGC+D +HYGH+N LRQA+A GD L+VGV +DEEI  +KGPPV + EER   V  
Sbjct: 8   VRVWCDGCYDXVHYGHSNQLRQARAXGDYLIVGVHTDEEIAKHKGPPVFTQEERYKXVQA 67
Query: 126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
           +KWVDEV+  APY  T + +++    +  D+ +HG+D  L  DG D Y   K+ GRY++ 
Sbjct: 68  IKWVDEVVPAAPYVTTLETLDK----YNCDFCVHGNDITLTVDGRDTYEEVKQAGRYREC 123
Query: 186 KRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNA--SLP--RDPLRAIQSKDAHLS 234
           KRT+GVS+TD+VGR L       SS E +    ++ ++    P  R+P   +       S
Sbjct: 124 KRTQGVSTTDLVGRXLLVTKAHHSSQEXSSEYREYADSFGKCPGGRNPWTGV-------S 176
Query: 235 QFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYT 292
           QFL TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K  +L +  +++ G++ 
Sbjct: 177 QFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHF 236
Query: 293 DQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
           DQ V+ ++G  +PI +LHER+LSVLACRYV EV+IGAP+ VT ++++ F + LV HG
Sbjct: 237 DQEVNHYKGKNYPIXNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVCHG 293

>pdb|3ELB|A Chain A, Human Ctp: Phosphoethanolamine Cytidylyltransferase In Complex With Cmp Length = 341

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 253 GPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHER 312
           G  A  V+ DG +D  H GH   L++AR  GD+L+VG++TD+ +++H+G   P+    ER
Sbjct: 4   GRRAVRVWCDGCYDXVHYGHSNQLRQARAXGDYLIVGVHTDEEIAKHKGP--PVFTQEER 61
Query: 313 SLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGT 350
              V A ++VDEV+  AP+  T + +  +N    VHG 
Sbjct: 62  YKXVQAIKWVDEVVPAAPYVTTLETLDKYNCDFCVHGN 99

>pdb|3HL4|A Chain A, Crystal Structure Of A Mammalian Ctp:phosphocholine Cytidylyltransferase With Cdp-Choline Length = 236

Iteration: 1
 Score =  108 bits (269), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 82/138 (59%), Gaps = 6/138 (4%)
Query: 66  VRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           VRVY DG FDL H GHA AL QAK L     L+VGV SDE     KG  V++  ER   V
Sbjct: 77  VRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAV 136
Query: 124 SGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYK 183
              ++VDEV+ NAP+ +T +F+     EH+ID++ H D P       D Y   K+ G + 
Sbjct: 137 QHCRYVDEVVRNAPWTLTPEFLA----EHRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFA 192
Query: 184 QIKRTEGVSSTDIVGRIL 201
             +RTEG+S++DI+ RI+
Sbjct: 193 PTQRTEGISTSDIITRIV 210

>pdb|3HL4|A Chain A, Crystal Structure Of A Mammalian Ctp:phosphocholine Cytidylyltransferase With Cdp-Choline Length = 236

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 5/113 (4%)
Query: 242 RIVQFSNCKG-PGPNARVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSE 298
           R+     C+G P      VY DG FDLFH+GH   L +A+ L    +L+VG+ +D++   
Sbjct: 61  RVTMEEACRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHN 120
Query: 299 HRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTV 351
            +G    +M+ +ER  +V  CRYVDEV+  APW +T + +    I  V H  +
Sbjct: 121 FKG--FTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDI 171

>pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltransferase From Bacillus Subtilis Length = 129

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 263 GAFDLFHAGHVEILKKARQLGDFLLVGIYTDQI-VSEHRGSYHPIMHLHERSLSVLACRY 321
           G FDL H GH+++L++A+QLGD+L+V I TD+  + + + +YH   H   R L +   RY
Sbjct: 8   GTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEH---RKLILETIRY 64
Query: 322 VDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTP-LTVSLQFLYLP 368
           VDEVI    WE  K  I   NI + V G   E     L    + +YLP
Sbjct: 65  VDEVIPEKNWEQKKQDIIDHNIDVFVMGDDWEGKFDFLKDQCEVVYLP 112

>pdb|2B7L|A Chain A, Crystal Structure Of Ctp:glycerol-3-Phosphate Cytidylyltransferase From Staphylococcus Aureus Length = 132

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 263 GAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVS-EHRGSYHPIMHLHERSLSVLACRY 321
           G +DL H GH+E+L++AR++GD+L+V + TD+    +H+ SY+      +R + + + RY
Sbjct: 8   GTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYD---YEQRKMMLESIRY 64
Query: 322 VDEVIIGAPWEVTKDMITTFNICLVVHG 349
           VD VI    W   +D +  F++ + V G
Sbjct: 65  VDLVIPEKGWGQKEDDVEKFDVDVFVMG 92

>pdb|3GLV|A Chain A, Crystal Structure Of The Lipopolysaccharide Core Biosynthesis Protein From Thermoplasma Volcanium Gss1 Length = 143

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 40/68 (58%)
Query: 66  VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
           +RV   G FD++H GH + L+++K LGDELVV V  D     N   P+     RLAL+S 
Sbjct: 3   IRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISE 62
Query: 126 LKWVDEVI 133
           LK VD  I
Sbjct: 63  LKVVDRAI 70

>pdb|3GLV|A Chain A, Crystal Structure Of The Lipopolysaccharide Core Biosynthesis Protein From Thermoplasma Volcanium Gss1 Length = 143

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 263 GAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYV 322
           G FD+ H GH+  LK++++LGD L+V +  D   + + G   PI   + R   +   + V
Sbjct: 9   GVFDILHLGHIHYLKESKKLGDELVVVVARDS-TARNNGKI-PIFDENSRLALISELKVV 66
Query: 323 DEVIIGAPWEVTKDMI 338
           D  I+G   ++ K +I
Sbjct: 67  DRAILGHEGDMMKTVI 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	379
3elb_A	341	Ethanolamine-phosphate cytidylyltransferase; kenne	1e-127
3elb_A	341	Ethanolamine-phosphate cytidylyltransferase; kenne	8e-48
3hl4_A	236	Choline-phosphate cytidylyltransferase A; rossmann	2e-61
3hl4_A	236	Choline-phosphate cytidylyltransferase A; rossmann	9e-36
2b7l_A	132	Glycerol-3-phosphate cytidylyltransferase; rossman	2e-54
2b7l_A	132	Glycerol-3-phosphate cytidylyltransferase; rossman	3e-32
1coz_A	129	Protein (glycerol-3-phosphate cytidylyltransferase	3e-54
1coz_A	129	Protein (glycerol-3-phosphate cytidylyltransferase	9e-33
3glv_A	143	Lipopolysaccharide core biosynthesis protein; stru	6e-23
3glv_A	143	Lipopolysaccharide core biosynthesis protein; stru	5e-17
3do8_A	148	Phosphopantetheine adenylyltransferase; protein wi	7e-10
3do8_A	148	Phosphopantetheine adenylyltransferase; protein wi	3e-07
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	3e-06
1ej2_A	181	Nicotinamide mononucleotide adenylyltransferase; d	4e-06
1f9a_A	168	Hypothetical protein MJ0541; alpha/beta, transfera	6e-06
1f9a_A	168	Hypothetical protein MJ0541; alpha/beta, transfera	1e-04
1od6_A	160	PPAT, phosphopantetheine adenylyltransferase; coen	3e-05
1qjc_A	158	Phosphopantetheine adenylyltransferase; coenzyme A	4e-05
4f3r_A	162	Phosphopantetheine adenylyltransferase; phosphopan	7e-05
3k9w_A	187	Phosphopantetheine adenylyltransferase; niaid, ssg	1e-04
3nd5_A	171	Phosphopantetheine adenylyltransferase; PPAT, coen	1e-04
3f3m_A	168	Phosphopantetheine adenylyltransferase; PPAT, coen	1e-04
1o6b_A	169	Phosphopantetheine adenylyltransferase; structural	1e-04
1vlh_A	173	Phosphopantetheine adenylyltransferase; TM0741, st	2e-04
3nbk_A	177	Phosphopantetheine adenylyltransferase; PPAT, PHP;	2e-04
3nv7_A	157	Phosphopantetheine adenylyltransferase; helicobact	3e-04

>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Length = 341

 Score =  369 bits (948), Expect = e-127
 Identities = 133/295 (45%), Positives = 200/295 (67%), Gaps = 10/295 (3%)

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
           G ++ VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER 
Sbjct: 3   GGRRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERY 62

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
            +V  +KWVDEV+  APY  T + +    +++  D+ +HG+D  L  DG D Y   K+ G
Sbjct: 63  KMVQAIKWVDEVVPAAPYVTTLETL----DKYNCDFCVHGNDITLTVDGRDTYEEVKQAG 118

Query: 181 RYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDA----HLSQF 236
           RY++ KRT+GVS+TD+VGR+L   +   + ++ ++                     +SQF
Sbjct: 119 RYRECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYADSFGKCPGGRNPWTGVSQF 178

Query: 237 LPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQ 294
           L TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K  +L +  +++ G++ DQ
Sbjct: 179 LQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQ 238

Query: 295 IVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
            V+ ++G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT ++++ F + LV HG
Sbjct: 239 EVNHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVCHG 293

>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Length = 341

 Score =  164 bits (417), Expect = 8e-48
 Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 9/158 (5%)

Query: 54  CFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDE--LVVGVVSDEEIIANKGP 111
            F   K  +     +Y+ G FDL H GH + L +   L +   ++ G+  D+E+   KG 
Sbjct: 187 QFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGK 246

Query: 112 --PVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCL-LPD 168
             P++++ ER   V   ++V EV+  APYA+T + +    +  K+D + HG    +   D
Sbjct: 247 NYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELL----SHFKVDLVCHGKTEIIPDRD 302

Query: 169 GTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMED 206
           G+D Y   K+ G ++QI     +++  IV RI+++  +
Sbjct: 303 GSDPYQEPKRRGIFRQIDSGSNLTTDLIVQRIITNRLE 340

>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus} Length = 236

 Score =  196 bits (499), Expect = 2e-61
 Identities = 61/154 (39%), Positives = 86/154 (55%), Gaps = 6/154 (3%)

Query: 55  FHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPP 112
              +    ++ VRVY DG FDL H GHA AL QAK L     L+VGV SDE     KG  
Sbjct: 66  EACRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFT 125

Query: 113 VLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDA 172
           V++  ER   V   ++VDEV+ NAP+ +T +F+     EH+ID++ H D P       D 
Sbjct: 126 VMNENERYDAVQHCRYVDEVVRNAPWTLTPEFL----AEHRIDFVAHDDIPYSSAGSDDV 181

Query: 173 YALAKKVGRYKQIKRTEGVSSTDIVGRILSSMED 206
           Y   K+ G +   +RTEG+S++DI+ RI+   + 
Sbjct: 182 YKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDV 215

>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus} Length = 236

 Score =  129 bits (326), Expect = 9e-36
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 11/170 (6%)

Query: 189 EGVSSTDIVGRIL---SSMEDTKACEDHNNASLPRDPL----RAIQSKDAHLSQFLPTSR 241
           +  SS  +  R         +    ED   + + R  +     A  S +  +    P  R
Sbjct: 2   DAQSSAKVNSRKRRKEVPGPNGATEEDGIPSKVQRCAVGLRQPAPFSDEIEVDFSKPYVR 61

Query: 242 RIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEH 299
             ++ +    P      VY DG FDLFH+GH   L +A+ L    +L+VG+ +D++    
Sbjct: 62  VTMEEACRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNF 121

Query: 300 RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
           +G    +M+ +ER  +V  CRYVDEV+  APW +T + +    I  V H 
Sbjct: 122 KG--FTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHD 169

>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus} Length = 132

 Score =  174 bits (444), Expect = 2e-54
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 10/136 (7%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           RV   G +DL+HYGH   LR+A+ +GD L+V + +DE             E+R  ++  +
Sbjct: 3   RVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESI 62

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK 186
           ++VD VI    +   E  +     +  +D  + G       D    +   K       +K
Sbjct: 63  RYVDLVIPEKGWGQKEDDV----EKFDVDVFVMGH------DWEGEFDFLKDKCEVIYLK 112

Query: 187 RTEGVSSTDIVGRILS 202
           RTEG+S+T I   +  
Sbjct: 113 RTEGISTTKIKQELYG 128

>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus} Length = 132

 Score =  116 bits (294), Expect = 3e-32
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 2/93 (2%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV 316
           + V   G +DL H GH+E+L++AR++GD+L+V + TD+                +R + +
Sbjct: 2   KRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKK--SYYDYEQRKMML 59

Query: 317 LACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
            + RYVD VI    W   +D +  F++ + V G
Sbjct: 60  ESIRYVDLVIPEKGWGQKEDDVEKFDVDVFVMG 92

>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A* Length = 129

 Score =  174 bits (443), Expect = 3e-54
 Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 10/134 (7%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           +V   G FDL+H+GH   L +AK LGD LVV + +DE  +  +     S E R  ++  +
Sbjct: 3   KVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETI 62

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK 186
           ++VDEVI    +   +Q +     +H ID  + GD      D    +   K       + 
Sbjct: 63  RYVDEVIPEKNWEQKKQDI----IDHNIDVFVMGD------DWEGKFDFLKDQCEVVYLP 112

Query: 187 RTEGVSSTDIVGRI 200
           RTEG+S+T I   I
Sbjct: 113 RTEGISTTKIKEEI 126

>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A* Length = 129

 Score =  118 bits (298), Expect = 9e-33
 Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV 316
           + V   G FDL H GH+++L++A+QLGD+L+V I TD+     +           R L +
Sbjct: 2   KKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFN--LQKQKKAYHSYEHRKLIL 59

Query: 317 LACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
              RYVDEVI    WE  K  I   NI + V G
Sbjct: 60  ETIRYVDEVIPEKNWEQKKQDIIDHNIDVFVMG 92

>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1} Length = 143

 Score = 92.6 bits (231), Expect = 6e-23
 Identities = 42/161 (26%), Positives = 61/161 (37%), Gaps = 43/161 (26%)

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGP--PVLSMEE 118
           G     RV   G FD++H GH + L+++K LGDELVV V  D           P+     
Sbjct: 1   GMI---RVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTA--RNNGKIPIFDENS 55

Query: 119 RLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPD----GTDAYA 174
           RLAL+S LK VD  I              L +E  +   +      + PD    G D   
Sbjct: 56  RLALISELKVVDRAI--------------LGHEGDMMKTVI----EVKPDIITLGYD-QK 96

Query: 175 LAKKVGRYKQIKR-------------TEGVSSTDIVGRILS 202
             +   + K  K               +  SS+ +  +I+ 
Sbjct: 97  FDEAELQSKINKLGITVKIVRISKYDGQLNSSSSVRKKIME 137

>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1} Length = 143

 Score = 76.1 bits (188), Expect = 5e-17
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV 316
             V   G FD+ H GH+  LK++++LGD L+V +  D   +       PI   + R   +
Sbjct: 3   IRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDS--TARNNGKIPIFDENSRLALI 60

Query: 317 LACRYVDEVIIG 328
              + VD  I+G
Sbjct: 61  SELKVVDRAILG 72

>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus} Length = 148

 Score = 56.2 bits (135), Expect = 7e-10
 Identities = 17/88 (19%), Positives = 30/88 (34%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           +V + G F+ +H GH   +  A  LG   +   V+ + +   +   VL    R   V   
Sbjct: 2   KVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARARIRSVLPFAIRAENVKRY 61

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKI 154
                        IT  +   L  + + 
Sbjct: 62  VMRKYGFEPEIVKITNPYGKTLDVDFEY 89

>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus} Length = 148

 Score = 48.5 bits (115), Expect = 3e-07
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 259 VYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL 317
           V + G F+  H GH +++  A +LG   + +G+ +D++      S  P      R+ +V 
Sbjct: 3   VALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARARIRSVLPFA---IRAENVK 59

Query: 318 ACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSET 354
                         ++T     T ++         ET
Sbjct: 60  RYVMRKYGFEPEIVKITNPYGKTLDVDFEYLVVSPET 96

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 Length = 365

 Score = 47.6 bits (112), Expect = 3e-06
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 12/83 (14%)

Query: 63  KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEE-----IIANKGPPVLSME 117
           +K+V V   G F  +H GH N + +A +  DEL V V SD          +K   + +++
Sbjct: 1   EKKVGVIF-GKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQ 59

Query: 118 ERLALVSGLKWVDEVIANAPYAI 140
           +RL       W+ ++       I
Sbjct: 60  DRLR------WMQQIFKYQKNQI 76

>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A* Length = 181

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 19/140 (13%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           R  + G     H GH   ++      DEL++ + S +   + + P   +  ER+ +++  
Sbjct: 5   RGLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLSHSIRDP--FTAGERVMMLT-- 60

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQ-- 184
           K + E    A         +   N   + +I       L P     Y+    V R     
Sbjct: 61  KALSENGIPASRYYIIPVQDIECNALWVGHIKM-----LTPPFDRVYSGNPLVQRLFSED 115

Query: 185 --------IKRTEGVSSTDI 196
                   +   +  S T++
Sbjct: 116 GYEVTAPPLFYRDRYSGTEV 135

>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3 Length = 168

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 16/93 (17%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 66  VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
           +R ++ G F   H GH   +++     DE+++G+ S ++    + P   +  ER+ +++ 
Sbjct: 1   LRGFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKSHTLENP--FTAGERILMIT- 57

Query: 126 LKWVDEVIANAP-YAITEQFMNRLFNEHKIDYI 157
                + + +           +  FN   + Y+
Sbjct: 58  -----QSLKDYDLTYYPIPIKDIEFNSIWVSYV 85

>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3 Length = 168

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSY 303
           R   I G F  FH GH+E++KK  +  D +++GI + Q        +
Sbjct: 2   RGFII-GRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKSHTLENPF 47

>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3 Length = 160

 Score = 42.8 bits (102), Expect = 3e-05
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVL-SMEERLALV 123
           G FD +  GH + +++A  L +++ V V+ +     +K    L S EERLA++
Sbjct: 7   GSFDPLTNGHLDVIQRASRLFEKVTVAVLENP----SKRGQYLFSAEERLAII 55

>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A Length = 158

 Score = 42.4 bits (101), Expect = 4e-05
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           ++  +Y  G FD +  GH + + +A  + D +++ + +      +K  P+ ++EER+AL 
Sbjct: 1   QKRAIY-PGTFDPITNGHIDIVTRATQMFDHVILAIAAS----PSKK-PMFTLEERVALA 54

>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii} Length = 162

 Score = 42.1 bits (100), Expect = 7e-05
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           K + +Y  G FD +  GH + + +A  L ++++V           K  P L +EER+ L+
Sbjct: 5   KPIAIY-PGTFDPLTNGHVDIIERALPLFNKIIVACAPTS----RKD-PHLKLEERVNLI 58

>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A* Length = 187

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 56  HKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLS 115
            + +      V VY  G FD +  GH + +R+A ++ D LVVGV         K  P  S
Sbjct: 14  AQTQGPGSMVVAVY-PGTFDPLTRGHEDLVRRASSIFDTLVVGVADS----RAKK-PFFS 67

Query: 116 MEERLALV 123
           +EERL + 
Sbjct: 68  LEERLKIA 75

>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} PDB: 3nd6_A* 3nd7_A* Length = 171

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           +++ ++  G FD M  GH N + ++  L DE+++GV  +     +K   + + EE+  L+
Sbjct: 2   RKIALF-PGSFDPMTNGHLNLIERSAKLFDEVIIGVFIN----TSKQ-TLFTPEEKKYLI 55

>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} Length = 168

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 63  KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLAL 122
           +  + V   G FD + YGH + + ++    DE+ V V+ +    + K     S+EER+ L
Sbjct: 2   EHTIAVI-PGSFDPITYGHLDIIERSTDRFDEIHVCVLKN----SKKE-GTFSLEERMDL 55

Query: 123 V 123
           +
Sbjct: 56  I 56

>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3 Length = 169

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
             + V   G FD + YGH + +++   + +++ V V+++    ++K  P+ S+EER  L+
Sbjct: 2   ASIAVC-PGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNN----SSKK-PLFSVEERCELL 55

>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3 Length = 173

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           G FD +  GH + +++A ++ DELVV V  +      K   + ++EER  L+
Sbjct: 19  GSFDPITLGHVDIIKRALSIFDELVVLVTENP----RKK-CMFTLEERKKLI 65

>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 3lcj_A* 3rba_A* 1tfu_A* 3rff_A 3rhs_A* Length = 177

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 11/73 (15%)

Query: 56  HKKKCGKKKRVRVYMD-----GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG 110
           H    G   R   +M      G FD +  GH +   +A A  DE+VV ++ +      K 
Sbjct: 8   HHHSSGLVPR-GSHMTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVN----PAKT 62

Query: 111 PPVLSMEERLALV 123
             +  ++ER+A+V
Sbjct: 63  -GMFDLDERIAMV 74

>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A* Length = 157

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           ++V +Y  G FD +  GH + + ++  L ++L+V V         K  P+ S++ERL ++
Sbjct: 2   QKVGIY-PGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSS----AKN-PMFSLDERLKMI 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	379
3elb_A	341	Ethanolamine-phosphate cytidylyltransferase; kenne	100.0
3hl4_A	236	Choline-phosphate cytidylyltransferase A; rossmann	99.97
3elb_A	341	Ethanolamine-phosphate cytidylyltransferase; kenne	99.94
3hl4_A	236	Choline-phosphate cytidylyltransferase A; rossmann	99.91
2b7l_A	132	Glycerol-3-phosphate cytidylyltransferase; rossman	99.9
1coz_A	129	Protein (glycerol-3-phosphate cytidylyltransferase	99.9
3glv_A	143	Lipopolysaccharide core biosynthesis protein; stru	99.88
3op1_A	308	Macrolide-efflux protein; structural genomics, PSI	99.85
1mrz_A	293	Riboflavin kinase/FMN adenylyltransferase; rossman	99.82
2x0k_A	338	Riboflavin biosynthesis protein RIBF; riboflavin k	99.8
3nv7_A	157	Phosphopantetheine adenylyltransferase; helicobact	99.78
1coz_A	129	Protein (glycerol-3-phosphate cytidylyltransferase	99.76
3k9w_A	187	Phosphopantetheine adenylyltransferase; niaid, ssg	99.75
2b7l_A	132	Glycerol-3-phosphate cytidylyltransferase; rossman	99.75
4f3r_A	162	Phosphopantetheine adenylyltransferase; phosphopan	99.73
1qjc_A	158	Phosphopantetheine adenylyltransferase; coenzyme A	99.71
2qtr_A	189	Nicotinate (nicotinamide) nucleotide adenylyltran;	99.71
1o6b_A	169	Phosphopantetheine adenylyltransferase; structural	99.7
3nbk_A	177	Phosphopantetheine adenylyltransferase; PPAT, PHP;	99.7
1kam_A	194	Deamido-NAD(+), nicotinate-nucleotide adenylyltran	99.7
3glv_A	143	Lipopolysaccharide core biosynthesis protein; stru	99.7
3k9w_A	187	Phosphopantetheine adenylyltransferase; niaid, ssg	99.69
3nv7_A	157	Phosphopantetheine adenylyltransferase; helicobact	99.68
4f3r_A	162	Phosphopantetheine adenylyltransferase; phosphopan	99.68
1od6_A	160	PPAT, phosphopantetheine adenylyltransferase; coen	99.65
3nd5_A	171	Phosphopantetheine adenylyltransferase; PPAT, coen	99.64
3f3m_A	168	Phosphopantetheine adenylyltransferase; PPAT, coen	99.62
1k4m_A	213	NAMN adenylyltransferase; nucleotidyltransferase;	99.62
3f3m_A	168	Phosphopantetheine adenylyltransferase; PPAT, coen	99.6
3nbk_A	177	Phosphopantetheine adenylyltransferase; PPAT, PHP;	99.59
3nd5_A	171	Phosphopantetheine adenylyltransferase; PPAT, coen	99.58
1yum_A	242	'probable nicotinate-nucleotide adenylyltransferas	99.53
1vlh_A	173	Phosphopantetheine adenylyltransferase; TM0741, st	99.53
2h29_A	189	Probable nicotinate-nucleotide adenylyltransferase	99.52
1vlh_A	173	Phosphopantetheine adenylyltransferase; TM0741, st	99.52
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.46
3h05_A	177	Uncharacterized protein VPA0413; nucleotidylyl, tr	99.45
1ej2_A	181	Nicotinamide mononucleotide adenylyltransferase; d	99.43
1qjc_A	158	Phosphopantetheine adenylyltransferase; coenzyme A	99.41
3gmi_A	357	UPF0348 protein MJ0951; protein with unknown funct	99.39
3do8_A	148	Phosphopantetheine adenylyltransferase; protein wi	99.37
1o6b_A	169	Phosphopantetheine adenylyltransferase; structural	99.33
1f9a_A	168	Hypothetical protein MJ0541; alpha/beta, transfera	99.32
1kqn_A	279	Nmnat, nicotinamide mononucleotide adenylyl transf	99.29
1od6_A	160	PPAT, phosphopantetheine adenylyltransferase; coen	99.27
2ejc_A	280	Pantoate--beta-alanine ligase; X-RAY diffraction,	99.27
1nup_A	252	FKSG76; NAD biosynthesis, mitochondria, pyridine a	99.23
1yum_A	242	'probable nicotinate-nucleotide adenylyltransferas	99.17
1kam_A	194	Deamido-NAD(+), nicotinate-nucleotide adenylyltran	99.17
2qtr_A	189	Nicotinate (nicotinamide) nucleotide adenylyltran;	99.12
3do8_A	148	Phosphopantetheine adenylyltransferase; protein wi	99.09
1k4m_A	213	NAMN adenylyltransferase; nucleotidyltransferase;	99.09
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.08
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.01
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.0
1v8f_A	276	Pantoate-beta-alanine ligase; rossmann fold, dimer	98.91
1mrz_A	293	Riboflavin kinase/FMN adenylyltransferase; rossman	98.89
2h29_A	189	Probable nicotinate-nucleotide adenylyltransferase	98.83
3ag6_A	283	Pantothenate synthetase; ATP-dependent enzyme, ATP	98.79
2x0k_A	338	Riboflavin biosynthesis protein RIBF; riboflavin k	98.73
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	98.6
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	98.59
1f9a_A	168	Hypothetical protein MJ0541; alpha/beta, transfera	98.59
3cov_A	301	Pantothenate synthetase; pantothenate biosynthesis	98.58
3op1_A	308	Macrolide-efflux protein; structural genomics, PSI	98.58
1ej2_A	181	Nicotinamide mononucleotide adenylyltransferase; d	98.52
2ejc_A	280	Pantoate--beta-alanine ligase; X-RAY diffraction,	98.51
3h05_A	177	Uncharacterized protein VPA0413; nucleotidylyl, tr	98.47
1kqn_A	279	Nmnat, nicotinamide mononucleotide adenylyl transf	98.33
1nup_A	252	FKSG76; NAD biosynthesis, mitochondria, pyridine a	98.27
1v47_A	349	ATP sulfurylase; product binding complex, zinc, ri	98.25
1jhd_A	396	Sulfate adenylyltransferase; sulfurylase, APS, che	98.22
3gmi_A	357	UPF0348 protein MJ0951; protein with unknown funct	98.2
3uk2_A	283	Pantothenate synthetase; AMP, structural genomics,	97.59
3inn_A	314	Pantothenate synthetase; ssgcid, SBRI, UW, decode,	96.91
1v8f_A	276	Pantoate-beta-alanine ligase; rossmann fold, dimer	96.79
3q12_A	287	Pantoate--beta-alanine ligase; structural genomics	96.15
3ag6_A	283	Pantothenate synthetase; ATP-dependent enzyme, ATP	96.04
3q12_A	287	Pantoate--beta-alanine ligase; structural genomics	95.67
3cov_A	301	Pantothenate synthetase; pantothenate biosynthesis	95.2
3mxt_A	285	Pantothenate synthetase; alpha-beta-alpha, structu	94.74
1r6x_A	395	ATP:sulfate adenylyltransferase; APS kinase-like d	94.31
3inn_A	314	Pantothenate synthetase; ssgcid, SBRI, UW, decode,	94.19
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	94.08
3n8h_A	264	Pantothenate synthetase; alpha-beta sandwich, liga	94.03
1v47_A	349	ATP sulfurylase; product binding complex, zinc, ri	94.02
1jhd_A	396	Sulfate adenylyltransferase; sulfurylase, APS, che	94.02
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	92.96
3n8h_A	264	Pantothenate synthetase; alpha-beta sandwich, liga	92.1
3mxt_A	285	Pantothenate synthetase; alpha-beta-alpha, structu	92.0
3uk2_A	283	Pantothenate synthetase; AMP, structural genomics,	90.87
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	90.35
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	87.19

>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.9e-65  Score=502.35  Aligned_cols=308  Identities=43%  Similarity=0.764  Sum_probs=261.1

Q ss_pred             CCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccccH
Q 016998           63 KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITE  142 (379)
Q Consensus        63 ~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~  142 (379)
                      ++|++|++.||||++|.||+++|++|+++||+|+||+++|+.+...|++|+++.+||++++++|+|||+|++..|+....
T Consensus         5 ~~~~~v~~~G~FD~lH~GH~~lL~~A~~l~d~LiVgV~~d~~v~~~K~~pi~s~eER~~~l~~l~~VD~Vv~f~~~~~~~   84 (341)
T 3elb_A            5 RRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQAIKWVDEVVPAAPYVTTL   84 (341)
T ss_dssp             CCCCEEEEEECCCSCCHHHHHHHHHHHHTSSEEEEEECCHHHHHHHSSCCSSCHHHHHHHHHHBTTCCEEEETCCSSCCH
T ss_pred             CCceEEEEEeeCCCCCHHHHHHHHHHHHhCCcCEEEeecCHHHhccCCCCCCCHHHHHHHHHHcCCCCEEEecCCCCCHH
Confidence            56889999999999999999999999999999999999999876677789999999999999999999999877776677


Q ss_pred             HHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhccccccccccccC--CCCCC
Q 016998          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNN--ASLPR  220 (379)
Q Consensus       143 efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~~~~~~~~~~~~~--~~~~~  220 (379)
                      +|++    ++++|++|+|+||++|.++.+.|+.+++.|+++.++|++++|||+|++||+.++++++.......  .+...
T Consensus        85 efi~----~~~~d~vV~G~D~~~g~~~~~~~~~~k~~G~~~~~~~t~g~STT~ii~ri~~~~~~~~~~~~~~~~~~~~~~  160 (341)
T 3elb_A           85 ETLD----KYNCDFCVHGNDITLTVDGRDTYEEVKQAGRYRECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYAD  160 (341)
T ss_dssp             HHHH----HTTCSEEEECSCCCBCTTSCBTTHHHHHTTCEEECCCCTTCCHHHHHHHHHC--------------------
T ss_pred             HHHH----HhCCCEEEECCCCCCCCCCcchHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhccccccccccchhhHHHHH
Confidence            8875    68999999999999999999999999999999999999999999999999999998875332211  11123


Q ss_pred             Cchhh--hccccccccccccccceeeccccCCCCCCCCeEEEEcCccccCChHHHHHHHHHHhcCC--EEEEEEecCcch
Q 016998          221 DPLRA--IQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQIV  296 (379)
Q Consensus       221 ~~~~~--~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd--~liVgv~~D~~v  296 (379)
                      .|+..  ..++++.+++|++++++|.||++|+.|.+++++||++|+|||||.||+++|++|+++||  +|||||++|+++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~iv~~~GsFD~~h~GHl~~L~rA~~l~D~~~LiVgV~~d~~v  240 (341)
T 3elb_A          161 SFGKCPGGRNPWTGVSQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEV  240 (341)
T ss_dssp             -----------CCCCCCCCCCHHHHHHHCCCCCCCTTCEEEEEEECCTTCCHHHHHHHHHHHTTSSSEEEEEEEECHHHH
T ss_pred             hhccCccccCCCcceecccCCcceeeeeccCCCCCCCCEEEEEecccCCCCHHHHHHHHHHHHhCCCCEEEEEEccCHhh
Confidence            34322  34567788999999999999999999999999999999999999999999999999999  999999999999


Q ss_pred             hccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchHHHHHHcCCcEEEEcCCCCCCCC--------CCCCceEEEEe
Q 016998          297 SEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTP--------LTVSLQFLYLP  368 (379)
Q Consensus       297 ~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~~~i~~~~~d~vv~G~d~~~~~~--------l~~~~evv~lp  368 (379)
                      ++.||+++|+||++||++++++|+|||+|++++|++++.+++++++||++|||+|+..+..        ...+.++..+|
T Consensus       241 ~~~Kg~~~pi~~~~ER~~~v~~~~~vd~V~v~~~~~l~~~~~~~~~~~~iv~G~d~~~~~~~g~d~y~~~k~~G~~~~i~  320 (341)
T 3elb_A          241 NHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVCHGKTEIIPDRDGSDPYQEPKRRGIFRQID  320 (341)
T ss_dssp             HHHHCTTCCSSCHHHHHHHHHTBTTCCEEEEEECSSCCHHHHHHTTCSEEEECSSCCCCCTTSCCTTHHHHHHTCEEECC
T ss_pred             HhhcCCCCCCCCHHHHHHHHHHcCCCCCEEECCCCcchHHHHHhcCCcEEEECCCCccccCCccchHHHHHhCCEEEEcC
Confidence            9999987899999999999999999999999999999999999999999999998776421        22367899999


Q ss_pred             eeccee
Q 016998          369 LINYCI  374 (379)
Q Consensus       369 ~~~~~~  374 (379)
                      +..++|
T Consensus       321 ~~~~~S  326 (341)
T 3elb_A          321 SGSNLT  326 (341)
T ss_dssp             CSCCCC
T ss_pred             CCCCCC
Confidence            887765

>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}

Probab=99.97  E-value=8.9e-31  Score=244.69  Aligned_cols=141  Identities=43%  Similarity=0.683  Sum_probs=130.8

Q ss_pred             cCCCCCeEEEEecccCcCCHHHHHHHHHHHHc--CCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCC
Q 016998           60 CGKKKRVRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAP  137 (379)
Q Consensus        60 ~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~--~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p  137 (379)
                      ....++++||+.|+||++|.||+++|++|+++  +|+|+|||++|+.+..+|++|+++.+||++++++|+|||+|+++.|
T Consensus        71 ~~~~~~~~V~~~GtFD~~H~GHl~iL~rAk~lf~gD~LIVgV~~D~~v~~~Kg~pi~s~eER~e~v~~~k~VD~Vvv~~p  150 (236)
T 3hl4_A           71 TPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAP  150 (236)
T ss_dssp             CCTTSCEEEEEEECCTTCCHHHHHHHHHHHTSSSSEEEEEEECCHHHHHHHTCCCSSCHHHHHHHHHTBTTCSEEESSCC
T ss_pred             CCCCCCeEEEEeccCCCCCHHHHHHHHHHHHhcCCCeEEEEEcccHHHhhcCCCCCCCHHHHHHHHHHhCCCCeEEECCc
Confidence            34467899999999999999999999999999  4899999999998877788899999999999999999999999999


Q ss_pred             ccccHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhcc
Q 016998          138 YAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSM  204 (379)
Q Consensus       138 ~~~t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~~  204 (379)
                      |.++.+|++    ++++|+||+|+|+.++.++.+.|+.+++.|+++.++|++++|||+|++||+...
T Consensus       151 ~~l~~d~i~----~~~~d~Vv~GDd~~~~~~~~d~y~~lk~~G~~~~v~rt~giSTT~Ii~RI~~~~  213 (236)
T 3hl4_A          151 WTLTPEFLA----EHRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDY  213 (236)
T ss_dssp             SSCCHHHHH----HTTCCEEEEESSCCCCSSCSCTTHHHHHTTCEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CcCcHHHHH----HcCCCEEEECCccccCCCchhHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHhH
Confidence            998888886    679999999999999888889999999999999999999999999999999764

>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}

Probab=99.94  E-value=2.6e-26  Score=226.31  Aligned_cols=146  Identities=31%  Similarity=0.583  Sum_probs=130.4

Q ss_pred             HhhhcccCCCCCeEEEEecccCcCCHHHHHHHHHHHHcCC--eEEEEEccchhhhccCC--CCCCCHHHHHHHHhcCccc
Q 016998           54 CFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGD--ELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWV  129 (379)
Q Consensus        54 ~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d--~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~~~~V  129 (379)
                      +|+.......+.++|++.|+||++|.||+.+|++|++++|  +|+|||++|+.+++.|+  +|+++++||++++++|++|
T Consensus       187 ~f~~g~~~~~~~~iv~~~GsFD~~h~GHl~~L~rA~~l~D~~~LiVgV~~d~~v~~~Kg~~~pi~~~~ER~~~v~~~~~v  266 (341)
T 3elb_A          187 QFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYPIMNLHERTLSVLACRYV  266 (341)
T ss_dssp             HHCCCCCCCTTCEEEEEEECCTTCCHHHHHHHHHHHTTSSSEEEEEEEECHHHHHHHHCTTCCSSCHHHHHHHHHTBTTC
T ss_pred             eeccCCCCCCCCEEEEEecccCCCCHHHHHHHHHHHHhCCCCEEEEEEccCHhhHhhcCCCCCCCCHHHHHHHHHHcCCC
Confidence            5665544445678899999999999999999999999999  99999999998887776  6999999999999999999


Q ss_pred             cEEEeCCCccccHHHHHHHhhccCccEEEEcCCCCCC-CCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 016998          130 DEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLL-PDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS  203 (379)
Q Consensus       130 D~Vv~~~p~~~t~efl~~ll~~~~~d~VV~GdD~~~g-~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~  203 (379)
                      |.|+.+.|+.++.+|++    +++++++|+|+||... ..|.+.|+..+..|+++.+++++++|||+|++||++.
T Consensus       267 d~V~v~~~~~l~~~~~~----~~~~~~iv~G~d~~~~~~~g~d~y~~~k~~G~~~~i~~~~~~STt~ii~RI~~n  337 (341)
T 3elb_A          267 SEVVIGAPYAVTAELLS----HFKVDLVCHGKTEIIPDRDGSDPYQEPKRRGIFRQIDSGSNLTTDLIVQRIITN  337 (341)
T ss_dssp             CEEEEEECSSCCHHHHH----HTTCSEEEECSSCCCCCTTSCCTTHHHHHHTCEEECCCSCCCCHHHHHHHHHC-
T ss_pred             CCEEECCCCcchHHHHH----hcCCcEEEECCCCccccCCccchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence            99999999988888886    5799999999998753 4567889999999999999999999999999999854

>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}

Probab=99.91  E-value=3.7e-25  Score=206.75  Aligned_cols=122  Identities=32%  Similarity=0.585  Sum_probs=107.0

Q ss_pred             CCCCCCeEEEEcCccccCChHHHHHHHHHHhc--CCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeC
Q 016998          251 GPGPNARVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIG  328 (379)
Q Consensus       251 ~~~~~~~~v~~~G~FDl~H~GHi~~L~~A~~~--gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~  328 (379)
                      .+.+..++||++|+||+||.||+++|++|+++  +|+|||||++|+.+.+.||  +|+|+++||++++++|+|||+|+++
T Consensus        71 ~~~~~~~~V~~~GtFD~~H~GHl~iL~rAk~lf~gD~LIVgV~~D~~v~~~Kg--~pi~s~eER~e~v~~~k~VD~Vvv~  148 (236)
T 3hl4_A           71 TPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKG--FTVMNENERYDAVQHCRYVDEVVRN  148 (236)
T ss_dssp             CCTTSCEEEEEEECCTTCCHHHHHHHHHHHTSSSSEEEEEEECCHHHHHHHTC--CCSSCHHHHHHHHHTBTTCSEEESS
T ss_pred             CCCCCCeEEEEeccCCCCCHHHHHHHHHHHHhcCCCeEEEEEcccHHHhhcCC--CCCCCHHHHHHHHHHhCCCCeEEEC
Confidence            34456788999999999999999999999999  5899999999998887787  5999999999999999999999999


Q ss_pred             CCCCchHHHHHHcCCcEEEEcCCCCCC-------CCCCCCceEEEEeeeccee
Q 016998          329 APWEVTKDMITTFNICLVVHGTVSETN-------TPLTVSLQFLYLPLINYCI  374 (379)
Q Consensus       329 ~~~~~~~~~i~~~~~d~vv~G~d~~~~-------~~l~~~~evv~lp~~~~~~  374 (379)
                      +||.++.+++++++||+++||+++...       +.+...+.++++|++.++|
T Consensus       149 ~p~~l~~d~i~~~~~d~Vv~GDd~~~~~~~~d~y~~lk~~G~~~~v~rt~giS  201 (236)
T 3hl4_A          149 APWTLTPEFLAEHRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFAPTQRTEGIS  201 (236)
T ss_dssp             CCSSCCHHHHHHTTCCEEEEESSCCCCSSCSCTTHHHHHTTCEEEECCCTTCC
T ss_pred             CcCcCcHHHHHHcCCCEEEECCccccCCCchhHHHHHHhCCeEEEeccCCCCC
Confidence            999999999999999999999886432       1234457789999998765

>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}

Probab=99.90  E-value=8e-24  Score=180.90  Aligned_cols=129  Identities=29%  Similarity=0.466  Sum_probs=95.2

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccccHHH
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~ef  144 (379)
                      |++++++|+||++|.||+.+|++|++.+++++|++.+|+.....+.+|+++.+||.+++++++++|.++...+++   +|
T Consensus         1 m~~~~~~G~FDp~H~GH~~li~~a~~~~~~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~~~~d~v~~~~~~~---~~   77 (132)
T 2b7l_A            1 MKRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESIRYVDLVIPEKGWG---QK   77 (132)
T ss_dssp             CCEEEEEECCCSCCHHHHHHHHHHHHTSSEEEEEEECHHHHHHTTCCCSSCHHHHHHHHHTBTTCCEEEEECCGG---GH
T ss_pred             CeEEEEeeecCcCCHHHHHHHHHHHHhCCcEEEEEECCHHHhccCCCCCCCHHHHHHHHHhcCCCCEEEECCChH---HH
Confidence            457999999999999999999999999999999999987532212268999999999999998899998755553   56


Q ss_pred             HHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 016998          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS  203 (379)
Q Consensus       145 l~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~  203 (379)
                      ++. +++++++++|+|+||.      +.++.++..+++..+++...||||.||++|.++
T Consensus        78 ~~~-~~~~~~~~iv~G~D~~------~~~~~L~~~~~v~~i~~~~~iSST~IR~~i~~g  129 (132)
T 2b7l_A           78 EDD-VEKFDVDVFVMGHDWE------GEFDFLKDKCEVIYLKRTEGISTTKIKQELYGK  129 (132)
T ss_dssp             HHH-HHHTTCCEEEECGGGT------TTTGGGTTTSEEEECSSCC--------------
T ss_pred             HHH-HHHcCCCEEEECCCCc------CcHHHHHhCCEEEEECCCCCcCHHHHHHHHHhc
Confidence            665 5678999999999993      234567888999999998899999999999865

>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*

Probab=99.90  E-value=1.3e-23  Score=178.70  Aligned_cols=127  Identities=34%  Similarity=0.498  Sum_probs=105.3

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccccHHH
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~ef  144 (379)
                      |++++++|+|||+|.||+.++++|++.+++++|++.+++.....+.+++++.+||.+++++++++|.++...+++   +|
T Consensus         1 m~~~~~~G~FDp~H~GH~~li~~a~~~~d~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~~~~d~v~~~~~~~---~~   77 (129)
T 1coz_A            1 MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEVIPEKNWE---QK   77 (129)
T ss_dssp             CCEEEEEECCCSCCHHHHHHHHHHHTTSSEEEEEEECHHHHHHHTCCCSSCHHHHHHHHTTBTTCCEEEEECCST---TH
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHhcCCCCCCCCHHHHHHHHHhcCCCCEEEeCCCHH---HH
Confidence            457999999999999999999999999999999999987322112268999999999999998899988765554   56


Q ss_pred             HHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 016998          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRIL  201 (379)
Q Consensus       145 l~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~  201 (379)
                      ++. +++++++++++|+||.      +.++.+++.+++..+++...||||.||++|.
T Consensus        78 ~~~-l~~~~~~~iv~G~D~~------~~~~~L~~~~~v~~~~~~~~iSST~IR~~i~  127 (129)
T 1coz_A           78 KQD-IIDHNIDVFVMGDDWE------GKFDFLKDQCEVVYLPRTEGISTTKIKEEIA  127 (129)
T ss_dssp             HHH-HHHTTCSEEEEEGGGT------TTTGGGTTTSEEEEECCCTTCCHHHHHHTC-
T ss_pred             HHH-HHHhCCcEEEECCCCC------CcHHHHHhCCeEEEcCCCCCcCHHHHHHHHH
Confidence            654 4578999999999993      2345678889999999999999999999875

>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}

Probab=99.88  E-value=7.4e-23  Score=178.06  Aligned_cols=133  Identities=34%  Similarity=0.451  Sum_probs=88.7

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccccHHH
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~ef  144 (379)
                      |++++++|+|||+|.||+.+|++|+++++.++|++++|+.....+.+++++.+||.++++++++||.++...|.    +|
T Consensus         2 m~~v~~~G~FD~vH~GH~~li~~a~~~~~~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~~~vd~v~~~~~~----~f   77 (143)
T 3glv_A            2 MIRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISELKVVDRAILGHEG----DM   77 (143)
T ss_dssp             CCEEEEEECCSSCCHHHHHHHHHHHTTSSEEEEEECCHHHHHHTTCCCSSCHHHHHHHHTTBTTCSEEEECCTT----CH
T ss_pred             ceEEEEEeecCCCCHHHHHHHHHHHHhCCCcEEEEECCcchhhcCCCCCCCHHHHHHHHHhcCCCCEEEEcCch----hH
Confidence            67899999999999999999999999999999999988876542237899999999999999889999986543    36


Q ss_pred             HHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCC-eEE--Eecc--CCCCCHHHHHHHHHhcc
Q 016998          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYK--QIKR--TEGVSSTDIVGRILSSM  204 (379)
Q Consensus       145 l~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-~~~--~v~r--~~~VSST~Ir~rI~~~~  204 (379)
                      ++ ++++++++++|+|+||+|+..  ...+..++.| .+.  ....  .+.||||.||++|.+..
T Consensus        78 ~~-~~~~l~~~~iv~G~d~~f~~~--~l~~~~~~~g~~v~vv~~~~~~~~~iSST~IR~~i~~~~  139 (143)
T 3glv_A           78 MK-TVIEVKPDIITLGYDQKFDEA--ELQSKINKLGITVKIVRISKYDGQLNSSSSVRKKIMELI  139 (143)
T ss_dssp             HH-HHHHHCCSEEEECTTCHHHHH--HHHHHHHHHTCCCEEEECCCCC-----------------
T ss_pred             HH-HHHhcCCCEEEECCCCCCCHH--HHHHHHHHcCCeEEEEEeeccCCCcCCHHHHHHHHHHHh
Confidence            54 566889999999999988421  1122223233 222  2222  35799999999998654

>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}

Probab=99.85  E-value=2.1e-21  Score=188.83  Aligned_cols=135  Identities=21%  Similarity=0.208  Sum_probs=110.2

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCe-----EEEEEccchhhhcc----CC-CCCCCHHHHHHHHhcCccccEEEeC
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALGDE-----LVVGVVSDEEIIAN----KG-PPVLSMEERLALVSGLKWVDEVIAN  135 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~-----LiVgV~sd~~i~~~----K~-~pi~t~eER~~~l~~~~~VD~Vv~~  135 (379)
                      ..|+++|+|||+|+||+++|++|++.|+.     +++++.++|.....    +. +++++.+||.++++++ +||.++. 
T Consensus        21 ~~vvtiG~FDGvH~GHq~li~~a~~~a~~~~~~~vV~TFdphP~~v~~~~~~~~~~~Lt~~~eK~~ll~~l-GVD~v~~-   98 (308)
T 3op1_A           21 DSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHILNPAERERKLKRE-GVEELYL-   98 (308)
T ss_dssp             CEEEEESCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEEESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHH-TCCEEEE-
T ss_pred             CeEEEEecCCcccHHHHHHHHHHHHHHHhcCCceEEEEecCCHHHHhCccccCCcccCCCHHHHHHHHHHc-CCCEEEE-
Confidence            47999999999999999999999999854     45666665543221    12 5799999999999998 6999986 


Q ss_pred             CCcc-----cc-HHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCe--EEEecc----CCCCCHHHHHHHHHhc
Q 016998          136 APYA-----IT-EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR--YKQIKR----TEGVSSTDIVGRILSS  203 (379)
Q Consensus       136 ~p~~-----~t-~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~--~~~v~r----~~~VSST~Ir~rI~~~  203 (379)
                      .||+     .+ ++|+++++++++++.+|+|+||+||. +.++.+.|++.|+  +..++.    .+.||||.||+.|.++
T Consensus        99 ~~F~~~~a~ls~e~Fv~~ll~~l~~~~ivvG~DfrFG~-r~G~~~~L~~~~~~~V~~v~~~~~~~~~ISST~IR~~L~~G  177 (308)
T 3op1_A           99 LDFSSQFASLTAQEFFATYIKAMNAKIIVAGFDYTFGS-DKKTAEDLKNYFDGEVIIVPPVEDEKGKISSTRIRQAILDG  177 (308)
T ss_dssp             ECCCHHHHTCCHHHHHHHHHHHHTEEEEEEETTCCBTT-TTBCSTTHHHHCSSEEEEECCCBCSSCBCCHHHHHHHHHHT
T ss_pred             ecCCHHHHcCCHHHHHHHHHHHcCCCEEEECcCCCCCC-cCCCHHHHHHhCCCCEEEeCCEecCCceEeHHHHHHHHHcC
Confidence            4443     22 48998888889999999999999999 9999999998875  666665    3579999999999876

>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A

Probab=99.82  E-value=3e-20  Score=179.81  Aligned_cols=130  Identities=22%  Similarity=0.301  Sum_probs=103.6

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCe-----EEEEEccchhhhccC-CCCCCCHHHHHHHHhcCccccEEEeCCCc---
Q 016998           68 VYMDGCFDLMHYGHANALRQAKALGDE-----LVVGVVSDEEIIANK-GPPVLSMEERLALVSGLKWVDEVIANAPY---  138 (379)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~-----LiVgV~sd~~i~~~K-~~pi~t~eER~~~l~~~~~VD~Vv~~~p~---  138 (379)
                      |+++|+|||+|.||+++|++|++.|+.     +++++.+++.+...+ .+++++.+||.+++++++ ++.++.   |   
T Consensus         2 vvtiG~FDgvH~GH~~ll~~a~~~a~~~~~~~vVvtFdphP~~l~~~~~~~l~~~~eR~~ll~~lg-~~~v~~---F~~~   77 (293)
T 1mrz_A            2 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVEMLSRYA-RTVVLD---FFRI   77 (293)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTTCCCBSSCHHHHHHHHTTTS-CEEEEC---HHHH
T ss_pred             EEEEeeCccccHHHHHHHHHHHHHHHHcCCeEEEEEecCCHHHhCCCCCCCCCCHHHHHHHHHhCC-CEEEEE---hHHh
Confidence            689999999999999999999999864     466666656332222 267999999999999997 555544   3   


Q ss_pred             --cccHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCC-eEEEecc----CCCCCHHHHHHHHHhc
Q 016998          139 --AITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKR----TEGVSSTDIVGRILSS  203 (379)
Q Consensus       139 --~~t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-~~~~v~r----~~~VSST~Ir~rI~~~  203 (379)
                        ...++|+++++  ++++++|+|+||+||.++.++.+.+++.| ++..++.    +..||||.||++|.++
T Consensus        78 a~ls~~~Fi~~il--l~~~~iVvG~Df~fG~~~~g~~~~L~~~G~~V~~v~~~~~~~~~iSST~IR~~L~~G  147 (293)
T 1mrz_A           78 KDLTPEGFVERYL--SGVSAVVVGRDFRFGKNASGNASFLRKKGVEVYEIEDVVVQGKRVSSSLIRNLVQEG  147 (293)
T ss_dssp             TTCCHHHHHHHHC--TTCCEEEEETTCCBSGGGCBCHHHHHHTTCEEEEECCCEETTEECCHHHHHHHHHTT
T ss_pred             hcCCHHHHHHHHh--cCCCEEEECCCCCCCCCCCCCHHHHHhCCCEEEEECCEEeCCccccHhHHHHHHhcC
Confidence              12258888766  89999999999999999999999998754 6777765    3579999999999876

>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}

Probab=99.80  E-value=9.1e-20  Score=179.75  Aligned_cols=136  Identities=15%  Similarity=0.222  Sum_probs=105.8

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCe-----EEEEEccchhhh--ccC-CCCCCCHHHHHHHHhcCccccEEEeCCC
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALGDE-----LVVGVVSDEEII--ANK-GPPVLSMEERLALVSGLKWVDEVIANAP  137 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~-----LiVgV~sd~~i~--~~K-~~pi~t~eER~~~l~~~~~VD~Vv~~~p  137 (379)
                      ..|+++|+|||+|.||+++|++|++.|+.     +++.+.+++...  ..+ .+++++.+||.++++++ +||.++. .|
T Consensus        16 ~~vvtiG~FDGvH~GHq~Li~~a~~~a~~~~~~~vvvtFdphP~~v~~~~~~~~~L~~~~eR~~ll~~~-gVD~v~v-~~   93 (338)
T 2x0k_A           16 NSAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERFALAESF-GIDGVLV-ID   93 (338)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCHHHHHSTTCSCCBSSCHHHHHHHHHHT-TCSEEEE-EC
T ss_pred             CeEEEEEeCCcccHHHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHcCCccCCCCCCCHHHHHHHHHhc-CCCEEEE-cc
Confidence            47999999999999999999999998854     344444443321  122 15699999999999998 6999876 33


Q ss_pred             cc-----cc-HHHHHH-HhhccCccEEEEcCCCCCCCCCchHHHHHHhCC----eEEEecc----CCCCCHHHHHHHHHh
Q 016998          138 YA-----IT-EQFMNR-LFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKR----TEGVSSTDIVGRILS  202 (379)
Q Consensus       138 ~~-----~t-~efl~~-ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g----~~~~v~r----~~~VSST~Ir~rI~~  202 (379)
                      |+     .+ ++|+++ +.++++++++|+|+||+||.++.++.+.|++.+    ++..++.    +..||||.||+.|.+
T Consensus        94 F~~~~a~ls~e~Fi~~il~~~l~~~~ivvG~Df~FG~~r~g~~~~L~~~~~~g~~V~~v~~~~~~~~~ISST~IR~~L~~  173 (338)
T 2x0k_A           94 FTRELSGTSPEKYVEFLLEDTLHASHVVVGANFTFGENAAGTADSLRQICQSRLTVDVIDLLDDEGVRISSTTVREFLSE  173 (338)
T ss_dssp             TTTSSSSCCHHHHHHHCCCCCTCEEEEEEETTCEESGGGCEEHHHHHHHTTTTSEEEEECCCEETTEECSHHHHHHHHHT
T ss_pred             ccHHHHhCCHHHHHHHHHHhhcCCCEEEEeecCCCCCCCCCCHHHHHHHhcCCeEEEEECcEecCCcccccchHHHHHhc
Confidence            32     22 489988 446799999999999999999999998888755    5666665    346999999999986


Q ss_pred             c
Q 016998          203 S  203 (379)
Q Consensus       203 ~  203 (379)
                      +
T Consensus       174 G  174 (338)
T 2x0k_A          174 G  174 (338)
T ss_dssp             T
T ss_pred             C
Confidence            6

>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*

Probab=99.78  E-value=5.3e-20  Score=162.93  Aligned_cols=108  Identities=21%  Similarity=0.305  Sum_probs=96.3

Q ss_pred             eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHH-ccCcCceEeCCCCCchH
Q 016998          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVTK  335 (379)
Q Consensus       257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~-~~~Vd~Vii~~~~~~~~  335 (379)
                      ++++++|+|||+|.||++++++|++++|+|+|++.+|.    .|   +|+++.+||+.+++. ++.+|+|.+...++++.
T Consensus         3 ~i~i~~GsFDPiH~GHl~ii~~A~~~~D~viv~v~~~~----~K---~~~~~~~eR~~ml~~a~~~~~~v~v~~~~~l~~   75 (157)
T 3nv7_A            3 KVGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSS----AK---NPMFSLDERLKMIQLATKSFKNVECVAFEGLLA   75 (157)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEECCG----GG---CCSSCHHHHHHHHHHHHTTSTTEEEEEECSCHH
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHHhCCceEEEEccCC----CC---CCCCCHHHHHHHHHHHhcCCCcEEEEecCchHH
Confidence            68999999999999999999999999999999999884    34   589999999999977 79999998877778899


Q ss_pred             HHHHHcCCcEEEEc----CCCCCC-------CCCCCCceEEEEeeec
Q 016998          336 DMITTFNICLVVHG----TVSETN-------TPLTVSLQFLYLPLIN  371 (379)
Q Consensus       336 ~~i~~~~~d~vv~G----~d~~~~-------~~l~~~~evv~lp~~~  371 (379)
                      +++++++||++|||    +||+++       ..+..++|++|||...
T Consensus        76 ~~~~~~~~~~ivrG~r~~~D~~ye~~~a~~n~~l~~~ietv~l~~~~  122 (157)
T 3nv7_A           76 YLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTL  122 (157)
T ss_dssp             HHHHHTTCCCBCCCCSCCCCHHHHHHHHHHHHHSSCCCCCCCCCCCH
T ss_pred             HHHHHcCCCEEEECCcccchhhhhHHHHHHHHHhCCCceEEEEcCCc
Confidence            99999999999999    888877       2567889999998764

>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*

Probab=99.76  E-value=2.6e-18  Score=145.85  Aligned_cols=113  Identities=36%  Similarity=0.549  Sum_probs=97.4

Q ss_pred             eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchHH
Q 016998          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKD  336 (379)
Q Consensus       257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~~  336 (379)
                      +++++.|+||++|.||+.++++|++.+|.++|+++.|+... .|++ .|+++.+||+.++++|+++|.|++..++..+.+
T Consensus         2 ~~~~~~G~FDp~H~GH~~li~~a~~~~d~~~v~v~~~~~~~-~~~~-~~l~~~~eR~~~l~~~~~~d~v~~~~~~~~~~~   79 (129)
T 1coz_A            2 KKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNL-QKQK-KAYHSYEHRKLILETIRYVDEVIPEKNWEQKKQ   79 (129)
T ss_dssp             CEEEEEECCCSCCHHHHHHHHHHHTTSSEEEEEEECHHHHH-HHTC-CCSSCHHHHHHHHTTBTTCCEEEEECCSTTHHH
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHh-cCCC-CCCCCHHHHHHHHHhcCCCCEEEeCCCHHHHHH
Confidence            57899999999999999999999999999999999986321 2443 589999999999999999999998777777778


Q ss_pred             HHHHcCCcEEEEcCCCCCC-CCCCCCceEEEEeeec
Q 016998          337 MITTFNICLVVHGTVSETN-TPLTVSLQFLYLPLIN  371 (379)
Q Consensus       337 ~i~~~~~d~vv~G~d~~~~-~~l~~~~evv~lp~~~  371 (379)
                      .++++++++++.|.||.++ +.+...++++.+|+..
T Consensus        80 ~l~~~~~~~iv~G~D~~~~~~~L~~~~~v~~~~~~~  115 (129)
T 1coz_A           80 DIIDHNIDVFVMGDDWEGKFDFLKDQCEVVYLPRTE  115 (129)
T ss_dssp             HHHHTTCSEEEEEGGGTTTTGGGTTTSEEEEECCCT
T ss_pred             HHHHhCCcEEEECCCCCCcHHHHHhCCeEEEcCCCC
Confidence            8999999999999999755 4667778999999744

>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*

Probab=99.75  E-value=1.7e-18  Score=157.47  Aligned_cols=136  Identities=22%  Similarity=0.259  Sum_probs=94.1

Q ss_pred             cccCCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-CccccEEEeCC
Q 016998           58 KKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANA  136 (379)
Q Consensus        58 ~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~Vv~~~  136 (379)
                      +.+....|+++++.|+||++|.||+.+|++|++++|+++++|.+++    .| +|+++.+||+++++. ++++|.+.. .
T Consensus        15 ~~~~~~~mki~v~~GsFDpiH~GHl~li~~A~~~~d~viv~v~~~p----~K-~~l~s~eeR~~ml~~~~~~v~~v~v-~   88 (187)
T 3k9w_A           15 QTQGPGSMVVAVYPGTFDPLTRGHEDLVRRASSIFDTLVVGVADSR----AK-KPFFSLEERLKIANEVLGHYPNVKV-M   88 (187)
T ss_dssp             -----CCCCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECCG----GG-CCSSCHHHHHHHHHHHHTTCTTEEE-E
T ss_pred             hhcccCCcEEEEEEEeCCcCcHHHHHHHHHHHHHCCcEEEEEecCC----cc-CCCCCHHHHHHHHHHHhccCCcEEE-E
Confidence            3344445789999999999999999999999999999999998864    23 589999999999998 578888766 2


Q ss_pred             Cc-cccHHHHHHHhhccCccEEEEc----CCCCCCCCCchHHHHHHhCCeEEEeccC---CCCCHHHHHHHHHhc
Q 016998          137 PY-AITEQFMNRLFNEHKIDYIIHG----DDPCLLPDGTDAYALAKKVGRYKQIKRT---EGVSSTDIVGRILSS  203 (379)
Q Consensus       137 p~-~~t~efl~~ll~~~~~d~VV~G----dD~~~g~~g~~~y~~lk~~g~~~~v~r~---~~VSST~Ir~rI~~~  203 (379)
                      +| .++.+|+    ++++++++|+|    .||.+...-......+...-+.+.+...   ..||||.||+++..+
T Consensus        89 ~f~~~~~d~l----~~l~~~~iv~G~r~~~Df~~E~~la~~nr~l~~~ietv~l~~~~~~~~ISST~IRe~~~~g  159 (187)
T 3k9w_A           89 GFTGLLKDFV----RANDARVIVRGLRAVSDFEYEFQMAGMNRYLLPDVETMFMTPSDQYQFISGTIVREIAQLG  159 (187)
T ss_dssp             EESSCHHHHH----HHTTCSEEEEECCTTSCHHHHHHHHHHHHHHCTTCEEEEECCCGGGTTCCHHHHHHHHHTT
T ss_pred             echhhHHHHH----HHcCCCEEEECCCcccccchHHHHHHHHHHhCCCCcEEEEecccccccccHHHHHHHHHcC
Confidence            33 2334444    56899999999    6664221000000111112233444433   479999999999865

>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}

Probab=99.75  E-value=5.6e-18  Score=144.48  Aligned_cols=113  Identities=29%  Similarity=0.523  Sum_probs=97.2

Q ss_pred             eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchHH
Q 016998          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKD  336 (379)
Q Consensus       257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~~  336 (379)
                      +++++.|+||++|.||+.++++|++.+|.++|+++.|+... .|++ .|+++.+||+.++++++++|.|++..++..+.+
T Consensus         2 ~~~~~~G~FDp~H~GH~~li~~a~~~~~~~~v~v~~~~~~~-~~~~-~~l~~~~eR~~~l~~~~~~d~v~~~~~~~~~~~   79 (132)
T 2b7l_A            2 KRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQ-IKHK-KSYYDYEQRKMMLESIRYVDLVIPEKGWGQKED   79 (132)
T ss_dssp             CEEEEEECCCSCCHHHHHHHHHHHHTSSEEEEEEECHHHHH-HTTC-CCSSCHHHHHHHHHTBTTCCEEEEECCGGGHHH
T ss_pred             eEEEEeeecCcCCHHHHHHHHHHHHhCCcEEEEEECCHHHh-ccCC-CCCCCHHHHHHHHHhcCCCCEEEECCChHHHHH
Confidence            57999999999999999999999999999999999987432 2443 589999999999999999999998666667778


Q ss_pred             HHHHcCCcEEEEcCCCCCC-CCCCCCceEEEEeeec
Q 016998          337 MITTFNICLVVHGTVSETN-TPLTVSLQFLYLPLIN  371 (379)
Q Consensus       337 ~i~~~~~d~vv~G~d~~~~-~~l~~~~evv~lp~~~  371 (379)
                      .++++++++++.|.|+..+ +.+...++++++|...
T Consensus        80 ~~~~~~~~~iv~G~D~~~~~~~L~~~~~v~~i~~~~  115 (132)
T 2b7l_A           80 DVEKFDVDVFVMGHDWEGEFDFLKDKCEVIYLKRTE  115 (132)
T ss_dssp             HHHHTTCCEEEECGGGTTTTGGGTTTSEEEECSSCC
T ss_pred             HHHHcCCCEEEECCCCcCcHHHHHhCCEEEEECCCC
Confidence            8999999999999998765 4566678999998743

>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}

Probab=99.73  E-value=2.2e-18  Score=153.28  Aligned_cols=109  Identities=19%  Similarity=0.302  Sum_probs=91.4

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchH
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK  335 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~  335 (379)
                      .++++++|+|||+|.||++++++|++++|+|+|++++|.    .|   +|+++.+||+.+++.+...|+|.+...++++.
T Consensus         5 m~i~i~~GsFDPiH~GHl~li~~A~~~~d~viv~v~~~~----~K---~~~~~~~~R~~m~~~~~~~~~v~V~~~~~l~~   77 (162)
T 4f3r_A            5 KPIAIYPGTFDPLTNGHVDIIERALPLFNKIIVACAPTS----RK---DPHLKLEERVNLIADVLTDERVEVLPLTGLLV   77 (162)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHGGGCSEEEEEECCC-------------CCHHHHHHHHHHHCCCTTEEEEECCSCHH
T ss_pred             eEEEEEEEEcCCCCHHHHHHHHHHHHHCCcEEEEEecCC----cc---CCCCCHHHHHHHHHHhhCCCCEEEEeccchHH
Confidence            478999999999999999999999999999999999774    34   58999999999997764449888877778999


Q ss_pred             HHHHHcCCcEEEEc----CCCCCCC-------CCCCCceEEEEeeec
Q 016998          336 DMITTFNICLVVHG----TVSETNT-------PLTVSLQFLYLPLIN  371 (379)
Q Consensus       336 ~~i~~~~~d~vv~G----~d~~~~~-------~l~~~~evv~lp~~~  371 (379)
                      +++++++++++++|    +||+++.       .+..++|+++||...
T Consensus        78 ~~~~~~~~~~~v~G~r~~~Df~~e~~~a~~nr~l~~~ietv~l~~~~  124 (162)
T 4f3r_A           78 DFAKTHQANFILRGLRAVSDFDYEFQLAHMNYQLSPEIETIFLPARE  124 (162)
T ss_dssp             HHHHHTTCCEEEEEECSHHHHHHHHHHHHHHHHHCTTCEEEEEECCG
T ss_pred             HHHHHcCCCEEEECCCchhhhhhHHHHHHHHHHhCCCccEEEEECCc
Confidence            99999999999999    6777662       466799999998764

>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A

Probab=99.71  E-value=1.5e-17  Score=145.52  Aligned_cols=128  Identities=16%  Similarity=0.224  Sum_probs=92.7

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-CccccEEEeCCCcc-ccHH
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYA-ITEQ  143 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~Vv~~~p~~-~t~e  143 (379)
                      +++++.|+|||+|.||+.++++|++.+|++++.+..++    .| +++++.+||++|++. +.++|.+... +++ ++.+
T Consensus         2 ~i~i~~GsFDpvH~GH~~l~~~a~~~~d~v~v~~~~~p----~k-~~~~~~~~R~~ml~~a~~~~~~v~v~-~~~~~~~~   75 (158)
T 1qjc_A            2 KRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASP----SK-KPMFTLEERVALAQQATAHLGNVEVV-GFSDLMAN   75 (158)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEESCC----SS-CCSSCHHHHHHHHHHHTTTCTTEEEE-EECSCHHH
T ss_pred             CEEEEEecCCCCCHHHHHHHHHHHHhCCEEEEEECCCC----CC-CCCCCHHHHHHHHHHHHhcCCCeEEc-ccchHHHH
Confidence            57999999999999999999999999999988888764    24 478999999999995 6788876652 232 3333


Q ss_pred             HHHHHhhccCccEEEEcCCCCCCCCCchHHHHH-HhCC----eEEEeccC--CCCCHHHHHHHHHhc
Q 016998          144 FMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALA-KKVG----RYKQIKRT--EGVSSTDIVGRILSS  203 (379)
Q Consensus       144 fl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~l-k~~g----~~~~v~r~--~~VSST~Ir~rI~~~  203 (379)
                          ++++++++++++|.|+.++.........+ +..+    .+..++..  ..||||.||++|.++
T Consensus        76 ----~l~~l~~~~~v~G~d~~~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~g  138 (158)
T 1qjc_A           76 ----FARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQ  138 (158)
T ss_dssp             ----HHHHTTCCEEEEECCTTCCHHHHHHHHHHHHHHCTTSEEEEECCCGGGTTCCHHHHHHHHHTT
T ss_pred             ----HHHHcCCCEEEEeccchhhhHHHHHHHHhCccCCCCCCEEEEECCCCCCccCHHHHHHHHHcC
Confidence                44567899999999987754333222211 2211    23333332  469999999999866

>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*

Probab=99.71  E-value=5.5e-18  Score=152.66  Aligned_cols=133  Identities=19%  Similarity=0.083  Sum_probs=102.7

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCC-CCCCCHHHHHHHHhc-CccccEEEeCCCcc--
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVDEVIANAPYA--  139 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~-~~~VD~Vv~~~p~~--  139 (379)
                      ++++++|+|||+|.||+.++++|++.+  +.+++++++++.   .|. +++++.+||++|++. +++++.+.. .+++  
T Consensus         3 ~i~i~~GsFDPvH~GH~~li~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~~R~~ml~~~~~~~~~v~v-~~~e~~   78 (189)
T 2qtr_A            3 KIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPP---HKQGRNITSVESRLQMLELATEAEEHFSI-CLEELS   78 (189)
T ss_dssp             EEEEEEECCSSCCHHHHC-CHHHHHHTTCSEEEEEECSSCT---TCTTSCCCCHHHHHHHHHHHHTTCTTEEE-CCTGGG
T ss_pred             eEEEEecCcccccHHHHHHHHHHHHHcCCCEEEEEECCCCC---CccCCCCCCHHHHHHHHHHHhCCCCCEEE-ehHHhc
Confidence            578999999999999999999999998  889999887663   343 579999999999995 667787765 3443  


Q ss_pred             -----ccHHHHHHHhhccCcc---EEEEcCCCCCCCCCchHHHHHHhCCeEEEeccC-----------------CCCCHH
Q 016998          140 -----ITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT-----------------EGVSST  194 (379)
Q Consensus       140 -----~t~efl~~ll~~~~~d---~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~-----------------~~VSST  194 (379)
                           ++.++++.+-.++ |+   ++|+|.|+.++..+++.++.+.+.+.+..++|.                 ..||||
T Consensus        79 ~~~~~~~~~~l~~l~~~~-p~~~~~~v~G~D~~~~~~~w~~~~~l~~~~~~~v~~r~~~~~~~~~~v~~~~~~~~~iSST  157 (189)
T 2qtr_A           79 RKGPSYTYDTMLQLTKKY-PDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSS  157 (189)
T ss_dssp             SCSCCCHHHHHHHHHHHC-TTCEEEEEEEHHHHHHGGGSTTHHHHTTTCEEEEECCTTCCCCCSSCCEEECCCCCCCCHH
T ss_pred             CCCCCCHHHHHHHHHHHC-CCCCEEEEEehhhhhhhhccCCHHHHHHhCCEEEEECCCCCccCCceEEEEcCCCCccCHH
Confidence                 4445554433333 33   399999999988888889888888876666541                 269999


Q ss_pred             HHHHHHHhc
Q 016998          195 DIVGRILSS  203 (379)
Q Consensus       195 ~Ir~rI~~~  203 (379)
                      .||+++.++
T Consensus       158 ~IR~~l~~g  166 (189)
T 2qtr_A          158 LLRERYKEK  166 (189)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            999999865

>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3

Probab=99.70  E-value=3e-17  Score=145.68  Aligned_cols=129  Identities=16%  Similarity=0.152  Sum_probs=92.3

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-CccccEEEeCCCccccHHH
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYAITEQF  144 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~Vv~~~p~~~t~ef  144 (379)
                      ++++++|+|||+|.||+.++++|++.+|+++|.+..++    .| +++++.+||++|++. +..+|.+.. .+++   +|
T Consensus         3 ~i~i~~GsFDpvH~GH~~li~~a~~~~d~v~v~~~~~p----~k-~~l~~~~~R~~ml~~a~~~~~~v~v-~~~e---~~   73 (169)
T 1o6b_A            3 SIAVCPGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNS----SK-KPLFSVEERCELLREVTKDIPNITV-ETSQ---GL   73 (169)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCC----SS-CCSSCHHHHHHHHHHHHTTCTTEEE-EECS---SC
T ss_pred             cEEEEEEeeCCCCHHHHHHHHHHHHhCCEEEEEECCCC----cc-CCCCCHHHHHHHHHHHHhcCCCEEE-cccc---hH
Confidence            57999999999999999999999999999888776543    24 578999999999985 457776654 2232   23


Q ss_pred             HHHHhhccCccEEEEcCCCCCCCCCchHHHHHHh----CCeEEEeccC---CCCCHHHHHHHHHhc
Q 016998          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK----VGRYKQIKRT---EGVSSTDIVGRILSS  203 (379)
Q Consensus       145 l~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~----~g~~~~v~r~---~~VSST~Ir~rI~~~  203 (379)
                      ..+.+++++++++++|.|+.++..+......+.+    ..+...+...   ..||||.||+++.++
T Consensus        74 ~~~~l~~l~~~~~i~G~d~~~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~l~~G  139 (169)
T 1o6b_A           74 LIDYARRKNAKAILRGLRAVSDFEYEMQGTSVNRVLDESIETFFMMANNQYSFLSSSIVKEVARYD  139 (169)
T ss_dssp             HHHHHHHTTCSEEEEEECSGGGHHHHHHHHHHHHHHCTTSEEEEEECCSTTTTCCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCEEEEcCccccchHHHHHHHHHhccccCCCCEEEEECCCCCCcCcHHHHHHHHHcC
Confidence            3334456789999999999877544333332222    1233332222   369999999999866

>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*

Probab=99.70  E-value=1.7e-17  Score=149.41  Aligned_cols=109  Identities=18%  Similarity=0.288  Sum_probs=95.2

Q ss_pred             CCCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeCCCCC
Q 016998          254 PNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAPWE  332 (379)
Q Consensus       254 ~~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~~~~~  332 (379)
                      ...++++++|+|||+|.||++++++|++++|+|+|++..|.    .|   +|.++.+||+.+++ +++..++|.+...++
T Consensus        19 ~~mki~i~~GsFDPiH~GHl~ii~~A~~~~D~Viv~v~~np----~K---~~~~s~eeR~~mv~~a~~~~~~v~V~~~e~   91 (177)
T 3nbk_A           19 SHMTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNP----AK---TGMFDLDERIAMVKESTTHLPNLRVQVGHG   91 (177)
T ss_dssp             -CCCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCT----TS---CCSSCHHHHHHHHHHHCTTCTTEEEEECCS
T ss_pred             CCCEEEEEEEeeCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CC---CCCCCHHHHHHHHHHHhCCCCCEEEEecCc
Confidence            34689999999999999999999999999999999999763    34   48999999999997 579999999988888


Q ss_pred             chHHHHHHcCCcEEEEc----CCCCCCC-------CCCCCceEEEEeee
Q 016998          333 VTKDMITTFNICLVVHG----TVSETNT-------PLTVSLQFLYLPLI  370 (379)
Q Consensus       333 ~~~~~i~~~~~d~vv~G----~d~~~~~-------~l~~~~evv~lp~~  370 (379)
                      ++.|++++++++++++|    +||+++.       .+ .++|++||+-.
T Consensus        92 l~vd~~~~~~a~~ivrGlr~~~Dfeye~~~a~~nr~l-~~ietvfl~~~  139 (177)
T 3nbk_A           92 LVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHI-AGVDTFFVATA  139 (177)
T ss_dssp             CHHHHHHHTTCCEEEEEECTTCCHHHHHHHHHHHHHH-HCCEEEEEECC
T ss_pred             hHHHHHHHcCCCEEEECCCchhHHHHHHHHHHHHHhc-CCCceEEEeCC
Confidence            99999999999999999    7777762       35 78999999743

>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*

Probab=99.70  E-value=1.9e-16  Score=143.78  Aligned_cols=133  Identities=18%  Similarity=0.049  Sum_probs=98.3

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCC-CCCCCHHHHHHHHhc-CccccEEEeCCCcc--
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVDEVIANAPYA--  139 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~-~~~VD~Vv~~~p~~--  139 (379)
                      ++++++|+|||+|.||+.++++|++.+  +.+++.+++++.   .|. +++++.+||++|++. +++++.+.. .+++  
T Consensus         8 ~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~~R~~ml~~a~~~~~~v~v-~~~e~~   83 (194)
T 1kam_A            8 KIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPP---HKQNEDYTDSFHRVEMLKLAIQSNPSFKL-ELVEME   83 (194)
T ss_dssp             EEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC------------CHHHHHHHHHHHHTTCTTEEE-CCGGGS
T ss_pred             EEEEEEeccccccHHHHHHHHHHHHHhCCCEEEEEECCCCC---CcCCcCCCCHHHHHHHHHHHHcCCCCeEE-eHHHhc
Confidence            578999999999999999999999998  888888887652   343 578999999999984 677887665 3333  


Q ss_pred             -----ccHHHHHHHhhccCcc---EEEEcCCCCCCCCCchHHHHHHhCCeEEEeccC-----------------CCCCHH
Q 016998          140 -----ITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT-----------------EGVSST  194 (379)
Q Consensus       140 -----~t~efl~~ll~~~~~d---~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~-----------------~~VSST  194 (379)
                           ++.++++.+..++ |+   ++|+|.|+.++...+..++.+.+...+..++|.                 ..||||
T Consensus        84 ~~~~~~t~~~l~~l~~~~-p~~~~~~v~G~D~~~~~~~W~~~e~i~~~~~~~v~~R~g~~~~l~~~i~~~~~~~~~ISST  162 (194)
T 1kam_A           84 REGPSYTFDTVSLLKQRY-PNDQLFFIIGADMIEYLPKWYKLDELLNLIQFIGVKRPGFHVETPYPLLFADVPEFEVSST  162 (194)
T ss_dssp             TTCCCSHHHHHHHHHHHS-TTSEEEEEEETTTTTTCCCCHHHHHHHHHSEEEEEECSSCCCCCSSCCEEEECCCBCCCHH
T ss_pred             CCCCCChHHHHHHHHHHC-CCCcEEEEEecchhhhhccccCHHHHHHhCcEEEEECCCcchhcCCCEEEeCCCCCCcCHH
Confidence                 5556666554444 44   999999999888888777766655555544442                 269999


Q ss_pred             HHHHHHHhc
Q 016998          195 DIVGRILSS  203 (379)
Q Consensus       195 ~Ir~rI~~~  203 (379)
                      .||+++..+
T Consensus       163 ~IR~~i~~g  171 (194)
T 1kam_A          163 MIRERFKSK  171 (194)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHcC
Confidence            999999866

>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}

Probab=99.70  E-value=5.7e-17  Score=140.81  Aligned_cols=95  Identities=25%  Similarity=0.419  Sum_probs=85.6

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchH
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK  335 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~  335 (379)
                      +++|++.|+||++|.||+.+|++|++++|.++|+++.|+...+ |++ .|+++.+||..++++|++||.|++.++.+. .
T Consensus         2 m~~v~~~G~FD~vH~GH~~li~~a~~~~~~~~v~v~~~~~~~~-~~~-~~l~~~~eR~~~l~~~~~vd~v~~~~~~~f-~   78 (143)
T 3glv_A            2 MIRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARN-NGK-IPIFDENSRLALISELKVVDRAILGHEGDM-M   78 (143)
T ss_dssp             CCEEEEEECCSSCCHHHHHHHHHHHTTSSEEEEEECCHHHHHH-TTC-CCSSCHHHHHHHHTTBTTCSEEEECCTTCH-H
T ss_pred             ceEEEEEeecCCCCHHHHHHHHHHHHhCCCcEEEEECCcchhh-cCC-CCCCCHHHHHHHHHhcCCCCEEEEcCchhH-H
Confidence            4789999999999999999999999999999999999987664 443 699999999999999999999999888774 5


Q ss_pred             HHHHHcCCcEEEEcCCCC
Q 016998          336 DMITTFNICLVVHGTVSE  353 (379)
Q Consensus       336 ~~i~~~~~d~vv~G~d~~  353 (379)
                      +++++++++++|+|.|+.
T Consensus        79 ~~~~~l~~~~iv~G~d~~   96 (143)
T 3glv_A           79 KTVIEVKPDIITLGYDQK   96 (143)
T ss_dssp             HHHHHHCCSEEEECTTCH
T ss_pred             HHHHhcCCCEEEECCCCC
Confidence            789999999999999974

>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*

Probab=99.69  E-value=3.5e-17  Score=148.71  Aligned_cols=109  Identities=20%  Similarity=0.296  Sum_probs=94.8

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHH-ccCcCceEeCCCCCch
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVT  334 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~-~~~Vd~Vii~~~~~~~  334 (379)
                      .+++++.|+||++|.||+.++++|++++|+|+|+|.+|.    .|   +|+++.+||+.+++. ++.+|.|.+.+..+++
T Consensus        22 mki~v~~GsFDpiH~GHl~li~~A~~~~d~viv~v~~~p----~K---~~l~s~eeR~~ml~~~~~~v~~v~v~~f~~~~   94 (187)
T 3k9w_A           22 MVVAVYPGTFDPLTRGHEDLVRRASSIFDTLVVGVADSR----AK---KPFFSLEERLKIANEVLGHYPNVKVMGFTGLL   94 (187)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECCG----GG---CCSSCHHHHHHHHHHHHTTCTTEEEEEESSCH
T ss_pred             cEEEEEEEeCCcCcHHHHHHHHHHHHHCCcEEEEEecCC----cc---CCCCCHHHHHHHHHHHhccCCcEEEEechhhH
Confidence            579999999999999999999999999999999999873    34   589999999999988 6999999887767889


Q ss_pred             HHHHHHcCCcEEEEc----CCCCCC-------CCCCCCceEEEEeeec
Q 016998          335 KDMITTFNICLVVHG----TVSETN-------TPLTVSLQFLYLPLIN  371 (379)
Q Consensus       335 ~~~i~~~~~d~vv~G----~d~~~~-------~~l~~~~evv~lp~~~  371 (379)
                      .+++++++++++|+|    .||+++       ..+..++|+++++...
T Consensus        95 ~d~l~~l~~~~iv~G~r~~~Df~~E~~la~~nr~l~~~ietv~l~~~~  142 (187)
T 3k9w_A           95 KDFVRANDARVIVRGLRAVSDFEYEFQMAGMNRYLLPDVETMFMTPSD  142 (187)
T ss_dssp             HHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHCTTCEEEEECCCG
T ss_pred             HHHHHHcCCCEEEECCCcccccchHHHHHHHHHHhCCCCcEEEEeccc
Confidence            999999999999999    666554       2456789999998653

>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*

Probab=99.68  E-value=7e-18  Score=149.30  Aligned_cols=126  Identities=20%  Similarity=0.223  Sum_probs=89.8

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-CccccEEEeCCCc-cccH
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPY-AITE  142 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~Vv~~~p~-~~t~  142 (379)
                      |+++++.|+||++|.||+.++++|++++|+|+|++.+++    .| +|+++.+||++|++. ++.++.+... +| ....
T Consensus         2 m~i~i~~GsFDPiH~GHl~ii~~A~~~~D~viv~v~~~~----~K-~~~~~~~eR~~ml~~a~~~~~~v~v~-~~~~l~~   75 (157)
T 3nv7_A            2 QKVGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSS----AK-NPMFSLDERLKMIQLATKSFKNVECV-AFEGLLA   75 (157)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEECCG----GG-CCSSCHHHHHHHHHHHHTTSTTEEEE-EECSCHH
T ss_pred             CEEEEEEEEcCCCCHHHHHHHHHHHHhCCceEEEEccCC----CC-CCCCCHHHHHHHHHHHhcCCCcEEEE-ecCchHH
Confidence            468999999999999999999999999999999998875    24 589999999999987 5677776541 22 2234


Q ss_pred             HHHHHHhhccCccEEEEc----CCCCCCCCCchHHHHHHhCC---eEEEeccCC---CCCHHHHHHHHHhc
Q 016998          143 QFMNRLFNEHKIDYIIHG----DDPCLLPDGTDAYALAKKVG---RYKQIKRTE---GVSSTDIVGRILSS  203 (379)
Q Consensus       143 efl~~ll~~~~~d~VV~G----dD~~~g~~g~~~y~~lk~~g---~~~~v~r~~---~VSST~Ir~rI~~~  203 (379)
                      +|+    ++++++++|.|    .||.+..+-   ...-+...   +.+.+..++   .+|||.||+.+..+
T Consensus        76 ~~~----~~~~~~~ivrG~r~~~D~~ye~~~---a~~n~~l~~~ietv~l~~~~~~~~iSSt~vRe~~~~g  139 (157)
T 3nv7_A           76 YLA----KEYHCKVLVRGLRVVSDFEYELQM---GYANKSLNHELETLYFMPTLQNAFISSSIVRSIIAHK  139 (157)
T ss_dssp             HHH----HHTTCCCBCCCCSCCCCHHHHHHH---HHHHHHSSCCCCCCCCCCCHHHHTCCHHHHHHHHHTT
T ss_pred             HHH----HHcCCCEEEECCcccchhhhhHHH---HHHHHHhCCCceEEEEcCCcccceeeHHHHHHHHHcC
Confidence            554    46899999999    676321100   00111222   223333333   79999999998855

>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}

Probab=99.68  E-value=2.7e-17  Score=146.22  Aligned_cols=130  Identities=18%  Similarity=0.204  Sum_probs=85.9

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccccHHH
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~ef  144 (379)
                      |+++++.|+||++|.||+.++++|++++|+++|++..++    .| +|+++.+||++|++.+...+.+........+.++
T Consensus         5 m~i~i~~GsFDPiH~GHl~li~~A~~~~d~viv~v~~~~----~K-~~~~~~~~R~~m~~~~~~~~~v~V~~~~~l~~~~   79 (162)
T 4f3r_A            5 KPIAIYPGTFDPLTNGHVDIIERALPLFNKIIVACAPTS----RK-DPHLKLEERVNLIADVLTDERVEVLPLTGLLVDF   79 (162)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHGGGCSEEEEEECCC-----------CCHHHHHHHHHHHCCCTTEEEEECCSCHHHH
T ss_pred             eEEEEEEEEcCCCCHHHHHHHHHHHHHCCcEEEEEecCC----cc-CCCCCHHHHHHHHHHhhCCCCEEEEeccchHHHH
Confidence            568999999999999999999999999999999999775    34 6899999999999875444655442212234455


Q ss_pred             HHHHhhccCccEEEEc----CCCCCCCCCchHHHHHHhCCeEEEeccC---CCCCHHHHHHHHHhc
Q 016998          145 MNRLFNEHKIDYIIHG----DDPCLLPDGTDAYALAKKVGRYKQIKRT---EGVSSTDIVGRILSS  203 (379)
Q Consensus       145 l~~ll~~~~~d~VV~G----dD~~~g~~g~~~y~~lk~~g~~~~v~r~---~~VSST~Ir~rI~~~  203 (379)
                      +    ++++++++|.|    .||....+-......+...-+.+.+...   ..||||.||+++..+
T Consensus        80 ~----~~~~~~~~v~G~r~~~Df~~e~~~a~~nr~l~~~ietv~l~~~~~~~~ISST~IRe~~~~g  141 (162)
T 4f3r_A           80 A----KTHQANFILRGLRAVSDFDYEFQLAHMNYQLSPEIETIFLPAREGYSYVSGTMVREIVTLG  141 (162)
T ss_dssp             H----HHTTCCEEEEEECSHHHHHHHHHHHHHHHHHCTTCEEEEEECCGGGSSCCHHHHHHHHHTT
T ss_pred             H----HHcCCCEEEECCCchhhhhhHHHHHHHHHHhCCCccEEEEECCcccccccHHHHHHHHHcC
Confidence            5    46799999999    5552100000000011112234444443   379999999999865

>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3

Probab=99.65  E-value=8.8e-16  Score=134.59  Aligned_cols=122  Identities=22%  Similarity=0.276  Sum_probs=85.4

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCC-CCCCCHHHHHHHHhc-CccccEEEeCCCccccHHHH
Q 016998           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVDEVIANAPYAITEQFM  145 (379)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~-~~~VD~Vv~~~p~~~t~efl  145 (379)
                      +++.|+|||+|.||+.++++|++.+|++++.+..++    .|. +++++.++|++|++. +.++|.+.. .+++   +|.
T Consensus         3 ~v~~GsFdp~H~GH~~l~~~a~~~~d~v~v~~~~~p----~k~~~~~~~~~~R~~ml~~a~~~~~~v~v-~~~e---~~~   74 (160)
T 1od6_A            3 VVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENP----SKRGQYLFSAEERLAIIREATAHLANVEA-ATFS---GLL   74 (160)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECC---------CCSSCHHHHHHHHHHHTTTCTTEEE-EEEC---SCH
T ss_pred             EEEEeeeCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CCCCCCCCCHHHHHHHHHHHhcCCCCEEE-EecC---chH
Confidence            899999999999999999999999999888887554    233 468999999999985 567776654 2332   144


Q ss_pred             HHHhhccCccEEEEcCCCCCCCCCchHHHHHH-------hC---Ce-EEEecc--CCCCCHHHHHHHHHhc
Q 016998          146 NRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK-------KV---GR-YKQIKR--TEGVSSTDIVGRILSS  203 (379)
Q Consensus       146 ~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk-------~~---g~-~~~v~r--~~~VSST~Ir~rI~~~  203 (379)
                      .+++++++++++++|.|.      +++++.++       ..   .. +..+..  ...||||.||+++.++
T Consensus        75 ~~~l~~l~~~~~v~G~d~------~~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~l~~G  139 (160)
T 1od6_A           75 VDFVRRVGAQAIVKGLRA------VSDYEYELQMAHLNRQLYPGLETLFILAATRYSFVSSTMVKEIARYG  139 (160)
T ss_dssp             HHHHHHTTCSEEEEEECT------TSCHHHHHHHHHHHHHHTTTCEEEEEECCGGGTTCCHHHHHHHHHTT
T ss_pred             HHHHHHcCCCEEEEeCCc------ccchHHHHHHHHhCcCCCCCCCEEEEeCCCCCCcccHHHHHHHHHcC
Confidence            344567899999999873      22222222       11   12 222322  2469999999999866

>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*

Probab=99.64  E-value=2e-16  Score=141.85  Aligned_cols=108  Identities=15%  Similarity=0.347  Sum_probs=88.4

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEe-CCCCCc
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVII-GAPWEV  333 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii-~~~~~~  333 (379)
                      .++++++|+|||+|.||+.++++|++.+|+|+|++..+.    .|   +|+++.+||+.+++ +++.+++|.+ ...++.
T Consensus         2 m~i~i~~GsFDPiH~GHl~i~~~a~~~~D~viv~v~~~~----~K---~~~~~~~~R~~ml~~a~~~~~~v~v~~~~e~~   74 (171)
T 3nd5_A            2 RKIALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFINT----SK---QTLFTPEEKKYLIEEATKEMPNVRVIMQETQL   74 (171)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEEC-------------CCCHHHHHHHHHHHHTTCTTEEEEEECSSC
T ss_pred             CeEEEEEEEccccCHHHHHHHHHHHHHCCCeEEEEecCC----CC---CCCCCHHHHHHHHHHHHccCCCEEEeeCCCCc
Confidence            368999999999999999999999999999999997663    34   48999999999997 5799999988 666789


Q ss_pred             hHHHHHHcCCcEEEEc----CCCCCC-------CCCCCCceEEEEeee
Q 016998          334 TKDMITTFNICLVVHG----TVSETN-------TPLTVSLQFLYLPLI  370 (379)
Q Consensus       334 ~~~~i~~~~~d~vv~G----~d~~~~-------~~l~~~~evv~lp~~  370 (379)
                      +.+++++++++++++|    .||+++       ..+..++++++++-.
T Consensus        75 tvd~~~~l~~~~~i~G~~~~~d~~~e~~la~~nr~l~~~~etv~l~~~  122 (171)
T 3nd5_A           75 TVESAKSLGANFLIRGIRNVKDYEYEKDIAKMNQHLAPEIETVFLLAE  122 (171)
T ss_dssp             HHHHHHHHTCCEEEEEECSHHHHHHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred             HHHHHHHCCCCEEEECCCchhhhHHHHHHHHHhhhhcCCccEEEEeCC
Confidence            9999999999999999    555544       134567899999643

>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0

Probab=99.62  E-value=8.3e-16  Score=137.39  Aligned_cols=130  Identities=18%  Similarity=0.179  Sum_probs=85.0

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-CccccEEEeCCCccccHH
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYAITEQ  143 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~Vv~~~p~~~t~e  143 (379)
                      ++++++.|+||++|.||+.++++|++.+|+++|++..++    .| +++++.+||++|++. ++..+.+....--.++.+
T Consensus         3 ~ki~i~~GsFDPiH~GHl~i~~~a~~~~d~viv~v~~~p----~K-~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~tvd   77 (168)
T 3f3m_A            3 HTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNS----KK-EGTFSLEERMDLIEQSVKHLPNVKVHQFSGLLVD   77 (168)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHGGGSSEEEEEECC----------CCSCHHHHHHHHHHHTTTCTTEEEEECCSCHHH
T ss_pred             ceEEEEEEEcCcCCHHHHHHHHHHHHhCCEEEEEEcCCC----CC-CCCCCHHHHHHhHHHHhcCCCCEEEEEcCCCHHH
Confidence            468999999999999999999999999999999998754    34 589999999999985 455565443211134556


Q ss_pred             HHHHHhhccCccEEEEcCCCCCCCCCchHHH----HHHhCCeEEEeccC---CCCCHHHHHHHHHhc
Q 016998          144 FMNRLFNEHKIDYIIHGDDPCLLPDGTDAYA----LAKKVGRYKQIKRT---EGVSSTDIVGRILSS  203 (379)
Q Consensus       144 fl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~----~lk~~g~~~~v~r~---~~VSST~Ir~rI~~~  203 (379)
                      +++    ++++++++.|-|-......+-...    .+....+.+.+..+   ..||||.||+++..+
T Consensus        78 ~~~----~l~~~~~I~G~d~~~d~~~e~~~a~~~r~l~~~~e~v~l~~~p~~~~ISST~IRe~~~~g  140 (168)
T 3f3m_A           78 YCE----QVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYR  140 (168)
T ss_dssp             HHH----HHTCCEEEEEECTTCCHHHHHHHHHHHHHHCTTSEEEEEECCTTTTTCCHHHHHHHHHTT
T ss_pred             HHH----HcCCCEEEEcCCchhhhhHHHHHhHHhHhhCCCCcEEEEeCCcccccccHHHHHHHHHcC
Confidence            654    568999999955322211110000    11111122222222   249999999999865

>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*

Probab=99.62  E-value=7.4e-16  Score=141.89  Aligned_cols=92  Identities=18%  Similarity=0.229  Sum_probs=74.8

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCCCCCCCHHHHHHHHh-cCccccEEEeCCCc------
Q 016998           68 VYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVS-GLKWVDEVIANAPY------  138 (379)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~-~~~~VD~Vv~~~p~------  138 (379)
                      +++.|+|||+|.||+.++++|++.+  |++++.+++++.   .|..++++.+||++|++ +++.++.+.. .++      
T Consensus         6 ~i~~GsFdPiH~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~R~~ml~~a~~~~~~v~v-~~~e~~~~~   81 (213)
T 1k4m_A            6 ALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPP---HRPQPEANSVQRKHMLELAIADKPLFTL-DERELKRNA   81 (213)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCT---TSCCCSSCHHHHHHHHHHHHTTCTTEEE-CCHHHHCSS
T ss_pred             EEEEeCcCCCCHHHHHHHHHHHHHcCCCEEEEEECCCCC---CCCCCCCCHHHHHHHHHHHhccCCCEEE-eHHHhcCCC
Confidence            8999999999999999999999998  888888887653   24346899999999998 5667777765 233      


Q ss_pred             -cccHHHHHHHhhccCcc---EEEEcCCC
Q 016998          139 -AITEQFMNRLFNEHKID---YIIHGDDP  163 (379)
Q Consensus       139 -~~t~efl~~ll~~~~~d---~VV~GdD~  163 (379)
                       .++.+|++.+.++++++   ++++|.|.
T Consensus        82 ~s~t~~~l~~l~~~~~~~~~~~~i~G~D~  110 (213)
T 1k4m_A           82 PSYTAQTLKEWRQEQGPDVPLAFIIGQDS  110 (213)
T ss_dssp             CCCHHHHHHHHHHHHCTTSCEEEEEEHHH
T ss_pred             CCcHHHHHHHHHHHhCCCCcEEEEEehhh
Confidence             35678888776667899   99999974

>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0

Probab=99.60  E-value=1.5e-15  Score=135.81  Aligned_cols=108  Identities=18%  Similarity=0.244  Sum_probs=89.6

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHH-ccCcCceEeCCCCCch
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVT  334 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~-~~~Vd~Vii~~~~~~~  334 (379)
                      ++++++.|+|||+|.||+.++++|++.+|.|+|+++.+.    .|   +|+++.+||+.+++. ++..+.|.+...++.+
T Consensus         3 ~ki~i~~GsFDPiH~GHl~i~~~a~~~~d~viv~v~~~p----~K---~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t   75 (168)
T 3f3m_A            3 HTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNS----KK---EGTFSLEERMDLIEQSVKHLPNVKVHQFSGLL   75 (168)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHGGGSSEEEEEECC------------CCSCHHHHHHHHHHHTTTCTTEEEEECCSCH
T ss_pred             ceEEEEEEEcCcCCHHHHHHHHHHHHhCCEEEEEEcCCC----CC---CCCCCHHHHHHhHHHHhcCCCCEEEEEcCCCH
Confidence            578999999999999999999999999999999999763    34   489999999999975 6889998887777899


Q ss_pred             HHHHHHcCCcEEEEc----CCCCCC-------CCCCCCceEEEEeee
Q 016998          335 KDMITTFNICLVVHG----TVSETN-------TPLTVSLQFLYLPLI  370 (379)
Q Consensus       335 ~~~i~~~~~d~vv~G----~d~~~~-------~~l~~~~evv~lp~~  370 (379)
                      .|++++++++++++|    .||+++       ..+..++++++++-.
T Consensus        76 vd~~~~l~~~~~I~G~d~~~d~~~e~~~a~~~r~l~~~~e~v~l~~~  122 (168)
T 3f3m_A           76 VDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSS  122 (168)
T ss_dssp             HHHHHHHTCCEEEEEECTTCCHHHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred             HHHHHHcCCCEEEEcCCchhhhhHHHHHhHHhHhhCCCCcEEEEeCC
Confidence            999999999999999    555544       134457899998754

>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*

Probab=99.59  E-value=3.3e-15  Score=134.51  Aligned_cols=133  Identities=17%  Similarity=0.152  Sum_probs=90.7

Q ss_pred             CCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-CccccEEEeCCCcc
Q 016998           61 GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYA  139 (379)
Q Consensus        61 ~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~Vv~~~p~~  139 (379)
                      ...+|+++++.|+||++|.||+.++++|++++|+|+|++..++    .| +++++.+||++|++. ++..+.+.+..-..
T Consensus        17 ~~~~mki~i~~GsFDPiH~GHl~ii~~A~~~~D~Viv~v~~np----~K-~~~~s~eeR~~mv~~a~~~~~~v~V~~~e~   91 (177)
T 3nbk_A           17 RGSHMTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNP----AK-TGMFDLDERIAMVKESTTHLPNLRVQVGHG   91 (177)
T ss_dssp             ---CCCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCT----TS-CCSSCHHHHHHHHHHHCTTCTTEEEEECCS
T ss_pred             CCCCCEEEEEEEeeCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CC-CCCCCHHHHHHHHHHHhCCCCCEEEEecCc
Confidence            3455779999999999999999999999999999999998765    34 489999999999985 55566554422223


Q ss_pred             ccHHHHHHHhhccCccEEEEcCCCCCCCCCchH----HHHHHhCCeEEEec---cCCCCCHHHHHHHHHhc
Q 016998          140 ITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDA----YALAKKVGRYKQIK---RTEGVSSTDIVGRILSS  203 (379)
Q Consensus       140 ~t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~----y~~lk~~g~~~~v~---r~~~VSST~Ir~rI~~~  203 (379)
                      ++.+|++    ++++++++.|-+...+.+.+-.    ...+ ..-+.+.+.   ....||||.||+++..+
T Consensus        92 l~vd~~~----~~~a~~ivrGlr~~~Dfeye~~~a~~nr~l-~~ietvfl~~~~~~~~ISST~IRe~~~~g  157 (177)
T 3nbk_A           92 LVVDFVR----SCGMTAIVKGLRTGTDFEYELQMAQMNKHI-AGVDTFFVATAPRYSFVSSSLAKEVAMLG  157 (177)
T ss_dssp             CHHHHHH----HTTCCEEEEEECTTCCHHHHHHHHHHHHHH-HCCEEEEEECCGGGSSCCHHHHHHHHHTT
T ss_pred             hHHHHHH----HcCCCEEEECCCchhHHHHHHHHHHHHHhc-CCCceEEEeCCCcccccchHHHHHHHHcC
Confidence            4556664    5799999999332111111100    1112 333433332   23479999999998755

>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*

Probab=99.58  E-value=1.4e-15  Score=136.26  Aligned_cols=124  Identities=22%  Similarity=0.255  Sum_probs=85.0

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-CccccEEEe-CCCccccH
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIA-NAPYAITE  142 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~Vv~-~~p~~~t~  142 (379)
                      |+++++.|+||++|.||+.++++|++++|+++|++..++    .| +|+++.+||++|++. ++.++.+.. ..--..+.
T Consensus         2 m~i~i~~GsFDPiH~GHl~i~~~a~~~~D~viv~v~~~~----~K-~~~~~~~~R~~ml~~a~~~~~~v~v~~~~e~~tv   76 (171)
T 3nd5_A            2 RKIALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFINT----SK-QTLFTPEEKKYLIEEATKEMPNVRVIMQETQLTV   76 (171)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEEC-----------CCCHHHHHHHHHHHHTTCTTEEEEEECSSCHH
T ss_pred             CeEEEEEEEccccCHHHHHHHHHHHHHCCCeEEEEecCC----CC-CCCCCHHHHHHHHHHHHccCCCEEEeeCCCCcHH
Confidence            468999999999999999999999999999999997654    34 489999999999984 566776644 22113455


Q ss_pred             HHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHH-------h---CCe-EEEec--cCCCCCHHHHHHHHHhc
Q 016998          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK-------K---VGR-YKQIK--RTEGVSSTDIVGRILSS  203 (379)
Q Consensus       143 efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk-------~---~g~-~~~v~--r~~~VSST~Ir~rI~~~  203 (379)
                      ++++    ++++++++.|-|.      ..+++...       .   ..+ +....  ....||||.||+++..+
T Consensus        77 d~~~----~l~~~~~i~G~~~------~~d~~~e~~la~~nr~l~~~~etv~l~~~~~~~~ISST~IRe~~~~g  140 (171)
T 3nd5_A           77 ESAK----SLGANFLIRGIRN------VKDYEYEKDIAKMNQHLAPEIETVFLLAEEPYAHVSSSLLKEVLRFG  140 (171)
T ss_dssp             HHHH----HHTCCEEEEEECS------HHHHHHHHHHHHHHHHHCTTSEEEEEECCGGGTTCCHHHHHHHHHTT
T ss_pred             HHHH----HCCCCEEEECCCc------hhhhHHHHHHHHHhhhhcCCccEEEEeCCccccccchHHHHHHHHcC
Confidence            6665    5689999999442      12222111       1   122 22222  23479999999999865

>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*

Probab=99.53  E-value=2e-14  Score=135.38  Aligned_cols=94  Identities=23%  Similarity=0.328  Sum_probs=75.4

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCCCCCCCHHHHHHHHh-cCccccEEEeCCCc---
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVS-GLKWVDEVIANAPY---  138 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~-~~~~VD~Vv~~~p~---  138 (379)
                      ++++++.|+||++|.||+.++++|++.+  |++++++..++.   .|..++++.++|++|++ ++.+++.+.+. ++   
T Consensus        23 ~~i~i~~GsFdPiH~GHl~li~~a~~~~~ld~v~v~~~~~~p---~K~~~~~~~~~R~~ml~~a~~~~~~v~v~-~~e~~   98 (242)
T 1yum_A           23 KRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPP---HRETPQVSAAQRLAMVERAVAGVERLTVD-PRELQ   98 (242)
T ss_dssp             CEEEEEEECCTTCCHHHHHHHHHHHHHHTCSEEEEEECCCCG---GGSCTTCCHHHHHHHHHHHHTTCTTEEEC-CGGGG
T ss_pred             ceEEEEEeeCcHhhHHHHHHHHHHHHHcCCCEEEEEEcCCCC---CCCCCCCCHHHHHHHHHHHhcCCCeEEEe-eeeec
Confidence            4678999999999999999999999998  899998888752   24457899999999998 46677777652 33   


Q ss_pred             ----cccHHHHHHHhhccCcc---EEEEcCC
Q 016998          139 ----AITEQFMNRLFNEHKID---YIIHGDD  162 (379)
Q Consensus       139 ----~~t~efl~~ll~~~~~d---~VV~GdD  162 (379)
                          .++.++++.+-.+++|+   ++++|.|
T Consensus        99 ~~~~sytvdtl~~l~~~~~p~~~~~fI~G~D  129 (242)
T 1yum_A           99 RDKPSYTIDTLESVRAELAADDQLFMLIGWD  129 (242)
T ss_dssp             SSSSCCHHHHHHHHHHHSCTTCEEEEEEEHH
T ss_pred             CCCCCCHHHHHHHHHHHhCCCCcEEEEEehh
Confidence                36678887665666677   8999986

>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3

Probab=99.53  E-value=1.7e-14  Score=129.14  Aligned_cols=124  Identities=25%  Similarity=0.295  Sum_probs=86.5

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHh-cCccccEEEeCCCcc-ccHH
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVS-GLKWVDEVIANAPYA-ITEQ  143 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~-~~~~VD~Vv~~~p~~-~t~e  143 (379)
                      -++++.|+||++|.||+.++++|++.+|+|+|++.+++    .| +++++.+||++|++ +++.++.+... +++ ++.+
T Consensus        13 ~i~i~~GsFdP~H~GHl~l~~~A~~~~D~viv~v~~~~----~k-k~~~~~~~R~~ml~~a~~~~~~v~v~-~~e~~tvd   86 (173)
T 1vlh_A           13 MKAVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENP----RK-KCMFTLEERKKLIEEVLSDLDGVKVD-VHHGLLVD   86 (173)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEECCT----TC-CCSSCHHHHHHHHHHHTTTCTTEEEE-EECSCHHH
T ss_pred             eEEEEEEEECcCcHHHHHHHHHHHHHCCEEEEEEeCCC----CC-CCCCCHHHHHHHHHHHhcCCCCEEEe-cCcchHHH
Confidence            36999999999999999999999999999999999864    23 48899999999998 68777766542 232 4555


Q ss_pred             HHHHHhhccCccEEEEc----CCCCCCCCCchHHHHHHh----CCeEEEecc---CCCCCHHHHHHHHHhc
Q 016998          144 FMNRLFNEHKIDYIIHG----DDPCLLPDGTDAYALAKK----VGRYKQIKR---TEGVSSTDIVGRILSS  203 (379)
Q Consensus       144 fl~~ll~~~~~d~VV~G----dD~~~g~~g~~~y~~lk~----~g~~~~v~r---~~~VSST~Ir~rI~~~  203 (379)
                      +++    ++++++++.|    .||..    .-......+    ..+...+..   .+.+|||.||+++..+
T Consensus        87 ~l~----~l~~~~~i~gl~~w~d~~~----~~~~~~~~r~~~~~~~~i~l~~~~~~~~iSST~IR~~i~~g  149 (173)
T 1vlh_A           87 YLK----KHGIKVLVRGLRAVTDYEY----ELQMALANKKLYSDLETVFLIASEKFSFISSSLVKEVALYG  149 (173)
T ss_dssp             HHH----HHTCCEEEEEECTTSCHHH----HHHHHHHHHHHSTTCEEEEEECCGGGTTCCHHHHHHHHHTT
T ss_pred             HHH----HhCCCeEEeCCCcccchhh----ccchhhcCCCCCCCCcEEEEeCCCCCCceeHHHHHHHHHcC
Confidence            554    5688999988    33310    000111111    122222222   3469999999999865

>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*

Probab=99.52  E-value=2.7e-14  Score=128.99  Aligned_cols=134  Identities=17%  Similarity=0.123  Sum_probs=95.1

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCC-CCCCCHHHHHHHHhc-CccccEEEeCC-----
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVDEVIANA-----  136 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~-~~~VD~Vv~~~-----  136 (379)
                      +++++.|+|||+|.||+.++++|++.+  |.+++.+++++.   .|+ +++++.+||++|++. ++..+.+....     
T Consensus         3 ~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~~R~~m~~~a~~~~~~v~v~~~e~~~   79 (189)
T 2h29_A            3 KIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSP---LKKHHDFIDVQHRLTMIQMIIDELGFGDICDDEIKR   79 (189)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECSBCT---TSCCCSSCCCHHHHHHHHHHHHHHTCCEECCHHHHH
T ss_pred             eEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEECCCCC---CCcCCCCCCHHHHHHHHHHHHcCCCCEEEehHHhcC
Confidence            578999999999999999999999987  888877776653   243 578999999999984 55555444321     


Q ss_pred             -CccccHHHHHHHhhccCcc---EEEEcCCCCCCCCCchHHHHHHhCCeEEEeccC-----------------CCCCHHH
Q 016998          137 -PYAITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT-----------------EGVSSTD  195 (379)
Q Consensus       137 -p~~~t~efl~~ll~~~~~d---~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~-----------------~~VSST~  195 (379)
                       ...++.++++.+...+ ++   +++.|.|.-.....+..++.+-....+..+.|.                 ..||||.
T Consensus        80 ~~~syt~dtl~~l~~~~-p~~~~~~i~G~D~~~~~~~W~~~~~i~~~~~~~v~~R~~~~~~~~~~i~~~~~~~~~ISST~  158 (189)
T 2h29_A           80 GGQSYTYDTIKAFKEQH-KDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTM  158 (189)
T ss_dssp             CSBCCHHHHHHHHHHHS-TTEEEEEEEEHHHHTTGGGSTTHHHHHHHCEEEEECCSSSCCCCCTTSEEECCCCBCCCHHH
T ss_pred             CCCCCHHHHHHHHHHHC-CCCcEEEEEecchhhhhccccCHHHHHhhCcEEEEECCCCccccCCcEEEEcCCCCccCHHH
Confidence             2335667777655444 66   899999864433334444555445555555552                 2599999


Q ss_pred             HHHHHHhc
Q 016998          196 IVGRILSS  203 (379)
Q Consensus       196 Ir~rI~~~  203 (379)
                      ||+++..+
T Consensus       159 IR~~i~~g  166 (189)
T 2h29_A          159 IRQRVSEG  166 (189)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHcC
Confidence            99999865

>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3

Probab=99.52  E-value=2.5e-14  Score=128.02  Aligned_cols=108  Identities=24%  Similarity=0.297  Sum_probs=88.6

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeCCCCCch
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAPWEVT  334 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~~~~~~~  334 (379)
                      ..++++.|+|||+|.||+.++++|++++|+|+|+++++.    .|   +|+++.+||+.+++ +++.++.|.+.+.++.+
T Consensus        12 ~~i~i~~GsFdP~H~GHl~l~~~A~~~~D~viv~v~~~~----~k---k~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t   84 (173)
T 1vlh_A           12 HMKAVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENP----RK---KCMFTLEERKKLIEEVLSDLDGVKVDVHHGLL   84 (173)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEECCT----TC---CCSSCHHHHHHHHHHHTTTCTTEEEEEECSCH
T ss_pred             ceEEEEEEEECcCcHHHHHHHHHHHHHCCEEEEEEeCCC----CC---CCCCCHHHHHHHHHHHhcCCCCEEEecCcchH
Confidence            358999999999999999999999999999999999873    23   48999999999997 79999999887666689


Q ss_pred             HHHHHHcCCcEEEEc----CCCCCCC-------CCCCCceEEEEeee
Q 016998          335 KDMITTFNICLVVHG----TVSETNT-------PLTVSLQFLYLPLI  370 (379)
Q Consensus       335 ~~~i~~~~~d~vv~G----~d~~~~~-------~l~~~~evv~lp~~  370 (379)
                      .+++++++++++++|    .||+...       ....++++++++..
T Consensus        85 vd~l~~l~~~~~i~gl~~w~d~~~~~~~~~~~r~~~~~~~~i~l~~~  131 (173)
T 1vlh_A           85 VDYLKKHGIKVLVRGLRAVTDYEYELQMALANKKLYSDLETVFLIAS  131 (173)
T ss_dssp             HHHHHHHTCCEEEEEECTTSCHHHHHHHHHHHHHHSTTCEEEEEECC
T ss_pred             HHHHHHhCCCeEEeCCCcccchhhccchhhcCCCCCCCCcEEEEeCC
Confidence            999999999999999    4443321       12235778887654

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.46  E-value=1.7e-13  Score=133.04  Aligned_cols=131  Identities=16%  Similarity=0.138  Sum_probs=88.2

Q ss_pred             CCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccE----E--EeCCC
Q 016998           64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE----V--IANAP  137 (379)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~----V--v~~~p  137 (379)
                      .|++++++|+||++|.||+.++++|++.+|+++|++.+++..  .+....++.++|++|++.. ..|.    +  +....
T Consensus         6 ~~~~~i~~G~FdP~H~GH~~li~~a~~~~d~v~v~v~~~~~p--~~~~~~~~~~~R~~m~~~~-~~~~~~~~~~~i~~~d   82 (341)
T 2qjo_A            6 KYQYGIYIGRFQPFHLGHLRTLNLALEKAEQVIIILGSHRVA--ADTRNPWRSPERMAMIEAC-LSPQILKRVHFLTVRD   82 (341)
T ss_dssp             SEEEEEEEECCTTCCHHHHHHHHHHHHHEEEEEEEEEEETCC--CCSSSCSCHHHHHHHHHTT-SCHHHHTTEEEEEEEC
T ss_pred             eeeEEEEEEEeCCCCHHHHHHHHHHHHhCCeEEEEECCcccC--CCCCCCCCHHHHHHHHHHH-hhhccCCeEEEEECCC
Confidence            357899999999999999999999999999888878776532  2333458999999999974 2332    2  22111


Q ss_pred             --cccc--HHHHHHHhhccC---ccEEEEcCCCCCCCCCchHHHHHHhC--CeEEEeccCCCCCHHHHHHHHHhc
Q 016998          138 --YAIT--EQFMNRLFNEHK---IDYIIHGDDPCLLPDGTDAYALAKKV--GRYKQIKRTEGVSSTDIVGRILSS  203 (379)
Q Consensus       138 --~~~t--~efl~~ll~~~~---~d~VV~GdD~~~g~~g~~~y~~lk~~--g~~~~v~r~~~VSST~Ir~rI~~~  203 (379)
                        +...  .+|.+++++.+.   ++++++|.++...    .  ...+..  -+...++....||||.||+++.++
T Consensus        83 ~~~~~~~w~~~~~~l~~~l~r~~~~~~~~g~~~~~~----~--~~~~~~~~~~~~~~~~~~~iSST~IR~~l~~g  151 (341)
T 2qjo_A           83 WLYSDNLWLAAVQQQVLKITGGSNSVVVLGHRKDAS----S--YYLNLFPQWDYLETGHYPDFSSTAIRGAYFEG  151 (341)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTTCSCEEEEECCCSGG----G--GGGGSCTTSEEEECCCCTTCCHHHHHHHHHHT
T ss_pred             CcCChHHHHHHHHHHhHHhcCCCceEEEEcCCCCCC----h--HHHHhccccceeecccCCCCCcHHHHHHHHcC
Confidence              1111  366555544433   7899999887311    1  112222  245555545789999999999866

>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}

Probab=99.45  E-value=1.3e-13  Score=124.14  Aligned_cols=133  Identities=14%  Similarity=0.086  Sum_probs=95.0

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-Ccccc--EEEeC-------
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVD--EVIAN-------  135 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD--~Vv~~-------  135 (379)
                      +++++.|+||++|.||+.+++ |.+..|++++++..+.   +.| +++.+.++|++|++. ++...  .+...       
T Consensus         3 ~igi~gGsFdPih~GHl~i~~-a~~~~d~v~~~p~~~~---~~k-~~~~~~~~R~~m~~~a~~~~~~~~~~v~~~E~~l~   77 (177)
T 3h05_A            3 KIAIFGSAFNPPSLGHKSVIE-SLSHFDLVLLEPSIAH---AWG-KNMLDYPIRCKLVDAFIKDMGLSNVQRSDLEQALY   77 (177)
T ss_dssp             EEEEEEECCSSCCHHHHHHHT-TCTTSSEEEEEECC-----------CCCHHHHHHHHHHHHHHHCCTTEEECCHHHHHC
T ss_pred             EEEEEEeccchhhHHHHHHHH-HHHHCCEEEEEECCCC---CCC-CCCCCHHHHHHHHHHHHhcCCCCcEEEEehhhhcc
Confidence            578999999999999999998 7777799999888752   223 568999999999985 22211  12210       


Q ss_pred             -CC-ccccHHHHHHHhhccC-cc-EEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 016998          136 -AP-YAITEQFMNRLFNEHK-ID-YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS  203 (379)
Q Consensus       136 -~p-~~~t~efl~~ll~~~~-~d-~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~  203 (379)
                       .. ..+|.+.++.+.+.+. .+ ++++|.|.-.+-..+..++.+-+...+..++|...||||+||++|.++
T Consensus        78 ~~~~~syT~dTl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~l~~~~~~vv~~r~~~iSST~IR~~i~~g  149 (177)
T 3h05_A           78 QPGQSVTTYALLEKIQEIYPTADITFVIGPDNFFKFAKFYKAEEITERWTVMACPEKVKIRSTDIRNALIEG  149 (177)
T ss_dssp             ----CCCHHHHHHHHHHHSTTSEEEEEECHHHHHTGGGSTTHHHHHHHSEEEECCCSSCCCHHHHHHHHHHT
T ss_pred             cCCCCcchHHHHHHHHHHhcCCCeEEEEecchhhhcccchhHHHHHHhCCEEEEcCCCCCcHHHHHHHHHcC
Confidence             11 3456677776655552 33 689999965554556667777777889999998899999999999876

>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*

Probab=99.43  E-value=6e-13  Score=119.48  Aligned_cols=126  Identities=16%  Similarity=0.162  Sum_probs=83.5

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC-ccc----cEEE-eCCC-c
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWV----DEVI-ANAP-Y  138 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~V----D~Vv-~~~p-~  138 (379)
                      ++++++|+|||+|.||+.++++|++.+|+++|++.++..  ..|++++++.+||+++++.. ...    +.+. .... +
T Consensus         4 ~~~i~~G~Fdp~H~GH~~l~~~a~~~~d~v~v~v~~~~~--p~~~~~~~~~~~R~~~~~~a~~~~~~~~~~v~v~~~d~~   81 (181)
T 1ej2_A            4 MRGLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQL--SHSIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQDI   81 (181)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTC--CSSSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEECCCC
T ss_pred             eEEEEEEEcCCcCHHHHHHHHHHHHhCCeeEEEECCCCC--CcCCCCCCCHHHHHHHHHHHHhhCCCCCCcEEEEecCcc
Confidence            379999999999999999999999999999888844432  23345678999999999863 222    2332 2221 1


Q ss_pred             ccc---HHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCC-eEEEeccCC--CCCHHHHHHHHHhc
Q 016998          139 AIT---EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKRTE--GVSSTDIVGRILSS  203 (379)
Q Consensus       139 ~~t---~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-~~~~v~r~~--~VSST~Ir~rI~~~  203 (379)
                      ...   .+|++++.  ..++.+++|.|+        ..+.++..+ ++..++..+  .||||.||+++..+
T Consensus        82 ~~~~~w~~~~~~l~--~~~~~~v~gr~~--------~~~~~~~~~i~~~~~~~~~~~~ISST~IR~~l~~G  142 (181)
T 1ej2_A           82 ECNALWVGHIKMLT--PPFDRVYSGNPL--------VQRLFSEDGYEVTAPPLFYRDRYSGTEVRRRMLDD  142 (181)
T ss_dssp             SCHHHHHHHHHHHS--CCCSEEECCCHH--------HHHHHHHTTCCEECCCCSSTTTSSHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHC--CCCCEEEECCHH--------HHHHHHhCCeEEEecCCCccCcCcHHHHHHHHHcC
Confidence            111   14444432  367889999764        112233333 445555433  59999999999866

>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A

Probab=99.41  E-value=8e-13  Score=115.29  Aligned_cols=92  Identities=18%  Similarity=0.331  Sum_probs=79.3

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeCCCCCch
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAPWEVT  334 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~~~~~~~  334 (379)
                      ++++++.|+||++|.||+.++++|++.+|.+++.++.|.    .|   .++++.+||+.+++ +++.+|.+.+.+....+
T Consensus         1 ~~i~i~~GsFDpvH~GH~~l~~~a~~~~d~v~v~~~~~p----~k---~~~~~~~~R~~ml~~a~~~~~~v~v~~~~~~~   73 (158)
T 1qjc_A            1 QKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASP----SK---KPMFTLEERVALAQQATAHLGNVEVVGFSDLM   73 (158)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEESCC----SS---CCSSCHHHHHHHHHHHTTTCTTEEEEEECSCH
T ss_pred             CCEEEEEecCCCCCHHHHHHHHHHHHhCCEEEEEECCCC----CC---CCCCCHHHHHHHHHHHHhcCCCeEEcccchHH
Confidence            368999999999999999999999999999999998873    34   37899999999997 58999998886655678


Q ss_pred             HHHHHHcCCcEEEEcCCCCC
Q 016998          335 KDMITTFNICLVVHGTVSET  354 (379)
Q Consensus       335 ~~~i~~~~~d~vv~G~d~~~  354 (379)
                      .++++++++++++.|.|.-.
T Consensus        74 ~~~l~~l~~~~~v~G~d~~~   93 (158)
T 1qjc_A           74 ANFARNQHATVLIRGLRAVA   93 (158)
T ss_dssp             HHHHHHTTCCEEEEECCTTC
T ss_pred             HHHHHHcCCCEEEEeccchh
Confidence            89999999999999976433

>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}

Probab=99.39  E-value=2.1e-12  Score=127.81  Aligned_cols=92  Identities=23%  Similarity=0.240  Sum_probs=74.7

Q ss_pred             CCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchh--hhccCC-CCCCCHHHHHHHHhcCccccEEEeCCCccc
Q 016998           64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEE--IIANKG-PPVLSMEERLALVSGLKWVDEVIANAPYAI  140 (379)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~--i~~~K~-~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~  140 (379)
                      .++.|+++|.|||+|.||+.+|++|++ .+ +++.|.+.+.  +.  ++ +.+++.++|.++++.+ +||.|++ .|+.+
T Consensus        51 ~~~~v~~lG~FDg~H~GHq~lI~~a~~-~~-~~~~Vms~~~~~vq--rg~~~l~~~~~R~~~~~~~-GvD~vie-lpF~~  124 (357)
T 3gmi_A           51 KDKIVCDFTEYNPLHKGHKYALEKGKE-HG-IFISVLPGPLERSG--RGIPYFLNRYIRAEMAIRA-GADIVVE-GPPMG  124 (357)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHHHT-SS-EEEEEECCTTSBCT--TSSBCSSCHHHHHHHHHHH-TCSEEEE-CCCGG
T ss_pred             CCCEEEEEEecCccCHHHHHHHHHHHH-cC-CeEEEEcCchHHhc--CCCCcCCCHHHHHHHHHHC-CCCEEEE-cCchh
Confidence            356899999999999999999999999 55 5666666443  32  33 6799999999999997 9999997 55533


Q ss_pred             c---HHHHHH---HhhccCccEEEEcC
Q 016998          141 T---EQFMNR---LFNEHKIDYIIHGD  161 (379)
Q Consensus       141 t---~efl~~---ll~~~~~d~VV~Gd  161 (379)
                      .   ++|++.   ++.++++++||+|.
T Consensus       125 ~~s~~~Fv~~~v~ll~~l~~~~iv~G~  151 (357)
T 3gmi_A          125 IMGSGQYMRCLIKMFYSLGAEIIPRGY  151 (357)
T ss_dssp             GSCHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             hCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence            2   589876   77889999999998

>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}

Probab=99.37  E-value=1.2e-13  Score=120.83  Aligned_cols=124  Identities=23%  Similarity=0.333  Sum_probs=83.0

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC--cc----ccEEEeCCCcc
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGL--KW----VDEVIANAPYA  139 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~--~~----VD~Vv~~~p~~  139 (379)
                      ++++.|+||++|.||..++++|++++ |+++|++.+++...+ +..++++.+||++|++..  +.    +..+-...+|.
T Consensus         2 ~~i~gGtFDPiH~GHl~l~~~a~~~~~d~viv~v~~~~~~~k-~~~~~~~~~~R~~ml~~a~~~~~~~~~~i~~i~D~~g   80 (148)
T 3do8_A            2 KVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARA-RIRSVLPFAIRAENVKRYVMRKYGFEPEIVKITNPYG   80 (148)
T ss_dssp             CEEEEECCSSCCHHHHHHHHHHHHHHTTCEEEEEECHHHHHH-HSCCCSCHHHHHHHHHHHHHHHHSSCCEEEEECSTTT
T ss_pred             EEEEEeeCCCCCHHHHHHHHHHHHhCCCEEEEEECCCccccc-cCCCCCCHHHHHHHHHHHHhcccCCcEEEEeecCCCC
Confidence            58999999999999999999999997 899999999986522 236899999999998863  21    22222334443


Q ss_pred             ccHHHHHHHhhccCccEEEEcCCCCCCCCCchHH-HHHHhCC----eEEEecc-----CCCCCHHHHHHHHHh
Q 016998          140 ITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAY-ALAKKVG----RYKQIKR-----TEGVSSTDIVGRILS  202 (379)
Q Consensus       140 ~t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y-~~lk~~g----~~~~v~r-----~~~VSST~Ir~rI~~  202 (379)
                      .+.        .-++|++|++.+-..+   .... +..++.|    ++..++.     ...||||.||+++..
T Consensus        81 ~~~--------~~~~d~ivvs~Et~~~---~~~l~~~~~~~G~~~l~V~~v~~~~~~~~~~iSST~IR~~~id  142 (148)
T 3do8_A           81 KTL--------DVDFEYLVVSPETYEM---ALKINQKREELGKRKITIVKVDWMMAEDGKPISSTRIKRGEID  142 (148)
T ss_dssp             TTT--------TSCCSEEEECTTTHHH---HHHHHHHHHHHTCCCCEEEEEECCC-------CCCCCCCSCCC
T ss_pred             CCC--------CCCCCEEEEChhhccc---HHHHHHHHHHcCCCeeEEEEeccEEcCCCCEEEHHHHHHHHHh
Confidence            332        2478999999875321   1112 2223333    3444443     245999999998764

>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3

Probab=99.33  E-value=4.6e-12  Score=112.10  Aligned_cols=107  Identities=16%  Similarity=0.314  Sum_probs=86.2

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeCCCCCch
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAPWEVT  334 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~~~~~~~  334 (379)
                      ++++++.|+||++|.||+.++++|++.+|.++|.+..+.    .|   .++++.+||+.+++ +++.+|.+.+.+....+
T Consensus         2 ~~i~i~~GsFDpvH~GH~~li~~a~~~~d~v~v~~~~~p----~k---~~l~~~~~R~~ml~~a~~~~~~v~v~~~e~~~   74 (169)
T 1o6b_A            2 ASIAVCPGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNS----SK---KPLFSVEERCELLREVTKDIPNITVETSQGLL   74 (169)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCC----SS---CCSSCHHHHHHHHHHHHTTCTTEEEEECSSCH
T ss_pred             CcEEEEEEeeCCCCHHHHHHHHHHHHhCCEEEEEECCCC----cc---CCCCCHHHHHHHHHHHHhcCCCEEEcccchHH
Confidence            368999999999999999999999999999999888542    24   47899999999997 46889998886655788


Q ss_pred             HHHHHHcCCcEEEEcCCCCCC-----------CCCCCCceEEEEee
Q 016998          335 KDMITTFNICLVVHGTVSETN-----------TPLTVSLQFLYLPL  369 (379)
Q Consensus       335 ~~~i~~~~~d~vv~G~d~~~~-----------~~l~~~~evv~lp~  369 (379)
                      .++++.+++++++.|.|.-.+           .....++++++++.
T Consensus        75 ~~~l~~l~~~~~i~G~d~~~~~~~~~~~~~~~r~~~~~~~~i~~~~  120 (169)
T 1o6b_A           75 IDYARRKNAKAILRGLRAVSDFEYEMQGTSVNRVLDESIETFFMMA  120 (169)
T ss_dssp             HHHHHHTTCSEEEEEECSGGGHHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             HHHHHHcCCCEEEEcCccccchHHHHHHHHHhccccCCCCEEEEEC
Confidence            899999999999999875432           11223677777754

>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3

Probab=99.32  E-value=1.7e-11  Score=108.74  Aligned_cols=125  Identities=21%  Similarity=0.333  Sum_probs=78.3

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-Ccccc-EEE--eCCCccccH
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVD-EVI--ANAPYAITE  142 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD-~Vv--~~~p~~~t~  142 (379)
                      ++++.|+||++|.||+.++++|++.+|+++|++.+...  ..|+.+.++.+||++|++. ++..+ .+.  .-..+....
T Consensus         2 i~i~~GsFdp~H~GH~~l~~~a~~~~d~v~v~v~~~~~--p~~~~~~~~~~~R~~m~~~~~~~~~~~v~v~~~d~l~~~~   79 (168)
T 1f9a_A            2 RGFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQK--SHTLENPFTAGERILMITQSLKDYDLTYYPIPIKDIEFNS   79 (168)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTC--CSSSSCCSCHHHHHHHHHHHHTTSSCEEEEEECCCCSCGG
T ss_pred             EEEEEEecCCcCHHHHHHHHHHHHhCCeEEEEEcCCCC--CCCCCCCCCHHHHHHHHHHHHhcCCCceEEEeeCCcccHH
Confidence            58999999999999999999999999999998833321  2233346799999999985 43333 232  111121122


Q ss_pred             ---HHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCC-eEEEeccCC--CCCHHHHHHHHHhc
Q 016998          143 ---QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKRTE--GVSSTDIVGRILSS  203 (379)
Q Consensus       143 ---efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-~~~~v~r~~--~VSST~Ir~rI~~~  203 (379)
                         ++++++  ...++.++.|.++        ....+...+ .+...+..+  .||||.||+++..+
T Consensus        80 ~w~~~~~~~--~~~~~~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~ISST~IR~~~~~g  136 (168)
T 1f9a_A           80 IWVSYVESL--TPPFDIVYSGNPL--------VRVLFEERGYEVKRPEMFNRKEYSGTEIRRRMLNG  136 (168)
T ss_dssp             GHHHHHHHH--SCCCSEEECCCHH--------HHHHHHHTTCEEECCCCCSTTTSSHHHHHHHHHHT
T ss_pred             HHHHHHHHh--ccCCCEEEECcHH--------HHHhhhhcCcEEEeCCccccCcccHHHHHHHHHcC
Confidence               233322  2356777766432        112233322 334444333  59999999999865

>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*

Probab=99.29  E-value=7.5e-12  Score=120.18  Aligned_cols=86  Identities=15%  Similarity=0.103  Sum_probs=57.6

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCe-----EEEE-EccchhhhccCCCCCCCHHHHHHHHhc-CccccEEEeC--
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDE-----LVVG-VVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIAN--  135 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~-----LiVg-V~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~Vv~~--  135 (379)
                      +++++++|+||++|.||+.++++|++.++.     ++++ +.+.+ ....| +++++.++|++|++. +...+.+...  
T Consensus         8 ~~i~i~gGsFDPiH~GHl~l~~~a~~~~~~d~~~~vvv~~f~P~~-~~~~K-~~l~s~~~R~~ml~~ai~~~~~~~v~~~   85 (279)
T 1kqn_A            8 EVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVG-DAYKK-KGLIPAYHRVIMAELATKNSKWVEVDTW   85 (279)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECC-GGGCC-TTCCCHHHHHHHHHHHTTTCSSEEECCT
T ss_pred             ceEEEEEeeecHhhHHHHHHHHHHHHHhcccCCceEEEEEEcCCC-CCccc-cCCCCHHHHHHHHHHHhcCCCcEEEecc
Confidence            567899999999999999999999998632     5443 22222 12233 568999999999985 4556655542  


Q ss_pred             ----CCccccHHHHHHHhhcc
Q 016998          136 ----APYAITEQFMNRLFNEH  152 (379)
Q Consensus       136 ----~p~~~t~efl~~ll~~~  152 (379)
                          ..+.+|.+.++.+-+++
T Consensus        86 E~~~~~~syTidtL~~l~~~~  106 (279)
T 1kqn_A           86 ESLQKEWKETLKVLRHHQEKL  106 (279)
T ss_dssp             GGGCSSCCCHHHHHHHHHHHH
T ss_pred             ccccCCCCcHHHHHHHHHHHH
Confidence                12344556665554445

>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3

Probab=99.27  E-value=1.4e-11  Score=107.68  Aligned_cols=89  Identities=18%  Similarity=0.284  Sum_probs=74.8

Q ss_pred             EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeCCCCCchHHH
Q 016998          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAPWEVTKDM  337 (379)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~~~~~~~~~~  337 (379)
                      +++.|+||++|.||+.++++|++.+|.++|.++.+.    .|.. .++++.++|+.+++ +++.+|.+.+.+..+.+.++
T Consensus         3 ~v~~GsFdp~H~GH~~l~~~a~~~~d~v~v~~~~~p----~k~~-~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~~~~   77 (160)
T 1od6_A            3 VVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENP----SKRG-QYLFSAEERLAIIREATAHLANVEAATFSGLLVDF   77 (160)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECC----------CCSSCHHHHHHHHHHHTTTCTTEEEEEECSCHHHH
T ss_pred             EEEEeeeCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CCCC-CCCCCHHHHHHHHHHHhcCCCCEEEEecCchHHHH
Confidence            789999999999999999999999999999998663    2321 36899999999997 56889988886655688999


Q ss_pred             HHHcCCcEEEEcCCC
Q 016998          338 ITTFNICLVVHGTVS  352 (379)
Q Consensus       338 i~~~~~d~vv~G~d~  352 (379)
                      ++++++++++.|.|.
T Consensus        78 l~~l~~~~~v~G~d~   92 (160)
T 1od6_A           78 VRRVGAQAIVKGLRA   92 (160)
T ss_dssp             HHHTTCSEEEEEECT
T ss_pred             HHHcCCCEEEEeCCc
Confidence            999999999999763

>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}

Probab=99.27  E-value=2.7e-13  Score=129.99  Aligned_cols=114  Identities=15%  Similarity=0.184  Sum_probs=79.8

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCC---CCCCCHHHHHHHHhcCccccEEEeCCCcccc-H
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG---PPVLSMEERLALVSGLKWVDEVIANAPYAIT-E  142 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~---~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t-~  142 (379)
                      ++.+.|+||++|.||+.+|++|++.+|.++|++.++|.-...+.   +.+.+.++|.++++++ +||.++.....++. +
T Consensus        23 ~V~~vgtfdgLH~GH~sLI~~A~~~ad~vVVSffvnP~qf~~~ed~~~yp~tle~d~~lL~~~-GVD~vf~p~~~~m~p~  101 (280)
T 2ejc_A           23 TIGFVPTMGYLHEGHLSLVRRARAENDVVVVSIFVNPTQFGPNEDYERYPRDFERDRKLLEKE-NVDCIFHPSVEEMYPP  101 (280)
T ss_dssp             CEEEEEECSCCCHHHHHHHHHHHHHSSEEEEEECCCGGGCCTTSCGGGSCCCHHHHHHHHHTT-TCSEEECCCHHHHSCT
T ss_pred             EEEEEcCCccccHHHHHHHHHHHHhCCEEEEEEeCChHHhcCCcccccCCCCHHHHHHHHHHC-CCCEEEeCCHHHCCCc
Confidence            46666999999999999999999999999999976665322111   3467899999999998 59999973211111 1


Q ss_pred             HHH--------HH-HhhccCccE------------EEEc-CCCCCCCCCchHHHHHHhCCe
Q 016998          143 QFM--------NR-LFNEHKIDY------------IIHG-DDPCLLPDGTDAYALAKKVGR  181 (379)
Q Consensus       143 efl--------~~-ll~~~~~d~------------VV~G-dD~~~g~~g~~~y~~lk~~g~  181 (379)
                      +|.        .. +..+++|.+            .++| +|++||.++.+....+++.++
T Consensus       102 ~f~~~v~~~~~~~~l~G~~rp~hF~Gv~tvv~kLf~iv~p~~~~FG~kd~qq~~~l~~~~~  162 (280)
T 2ejc_A          102 DFSTYVEETKLSKHLCGRSRPGHFRGVCTVVTKLFNIVKPHRAYFGQKDAQQFRVLRRMVR  162 (280)
T ss_dssp             TCCCCCCCCSGGGTTTGGGSTTHHHHHHHHHHHHHHHHCCSEEEEEGGGHHHHHHHHHHHH
T ss_pred             CceEEEEcCCcceEEecCCCCCeecceEEEEeeeceeccCceEEeCCCCCcCHHHHHHHHH
Confidence            232        11 112334443            4444 499999999998888887653

>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*

Probab=99.23  E-value=1.9e-11  Score=115.44  Aligned_cols=88  Identities=14%  Similarity=0.088  Sum_probs=56.9

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCe----EEEEEccchhhhccCCCCCCCHHHHHHHHhc-CccccEEEe-----
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDE----LVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIA-----  134 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~----LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~Vv~-----  134 (379)
                      +++++++|+||++|.||+.++++|++.++.    .+|++...+.....+++++++.++|++|++. +...+.+..     
T Consensus         6 ~~i~i~~GsFdPiH~GHl~l~~~a~~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~m~~~ai~~~~~~~v~~~E~   85 (252)
T 1nup_A            6 PVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQTSDWIRVDPWES   85 (252)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTCSSSCCCCHHHHHHHHHHHGGGCSSEEECCHHH
T ss_pred             ceEEEEEecCcHhhHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCcccCCCCCCHHHHHHHHHHHhcCCCceEeehHHh
Confidence            567899999999999999999999998743    4543232222112222468999999999984 333333332     


Q ss_pred             -CCCccccHHHHHHHhhcc
Q 016998          135 -NAPYAITEQFMNRLFNEH  152 (379)
Q Consensus       135 -~~p~~~t~efl~~ll~~~  152 (379)
                       ...+.+|.+.++.+-+++
T Consensus        86 ~~~~~syTidtL~~l~~~~  104 (252)
T 1nup_A           86 EQAQWMETVKVLRHHHSKL  104 (252)
T ss_dssp             HSSSCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHH
Confidence             123445556665554444

>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*

Probab=99.17  E-value=9.4e-11  Score=110.23  Aligned_cols=111  Identities=19%  Similarity=0.143  Sum_probs=87.8

Q ss_pred             CCeEEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeCCCC
Q 016998          255 NARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAPW  331 (379)
Q Consensus       255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~~~~  331 (379)
                      .++++++.|+||++|.||+.++++|++.+  |.++|+++.|..   .|+  .++++.++|+.+++ +++.++.|.+.+.+
T Consensus        22 ~~~i~i~~GsFdPiH~GHl~li~~a~~~~~ld~v~v~~~~~~p---~K~--~~~~~~~~R~~ml~~a~~~~~~v~v~~~e   96 (242)
T 1yum_A           22 GKRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPP---HRE--TPQVSAAQRLAMVERAVAGVERLTVDPRE   96 (242)
T ss_dssp             CCEEEEEEECCTTCCHHHHHHHHHHHHHHTCSEEEEEECCCCG---GGS--CTTCCHHHHHHHHHHHHTTCTTEEECCGG
T ss_pred             CceEEEEEeeCcHhhHHHHHHHHHHHHHcCCCEEEEEEcCCCC---CCC--CCCCCHHHHHHHHHHHhcCCCeEEEeeee
Confidence            35789999999999999999999999988  999999998852   242  47899999999997 68899999886533


Q ss_pred             ------CchHHHHHHc----CCc---EEEEcCC-------CCCCCCCCCCceEEEEeee
Q 016998          332 ------EVTKDMITTF----NIC---LVVHGTV-------SETNTPLTVSLQFLYLPLI  370 (379)
Q Consensus       332 ------~~~~~~i~~~----~~d---~vv~G~d-------~~~~~~l~~~~evv~lp~~  370 (379)
                            ..+.+.++.+    +|+   +++.|.|       |..-+.+-..+.++.+++.
T Consensus        97 ~~~~~~sytvdtl~~l~~~~~p~~~~~fI~G~D~l~~l~~W~~~~~i~~~~~~vv~~R~  155 (242)
T 1yum_A           97 LQRDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHRWEALLDHCHIVVLQRP  155 (242)
T ss_dssp             GGSSSSCCHHHHHHHHHHHSCTTCEEEEEEEHHHHTTGGGSTTGGGSTTTCEEEEEECS
T ss_pred             ecCCCCCCHHHHHHHHHHHhCCCCcEEEEEehhHhhhhhhhcCHHHHHhhCcEEEEECC
Confidence                  5888988776    688   7999964       4433344456777777765

>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*

Probab=99.17  E-value=5.3e-11  Score=107.71  Aligned_cols=96  Identities=14%  Similarity=0.078  Sum_probs=72.8

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeCCCC-
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAPW-  331 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~~~~-  331 (379)
                      ++++++.|+||++|.||+.++++|++.+  |.+++.++.+..   .|+. .++++.+||+.+++ +++.+|.+.+.+.+ 
T Consensus         7 ~~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~~-~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~   82 (194)
T 1kam_A            7 KKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPP---HKQN-EDYTDSFHRVEMLKLAIQSNPSFKLELVEM   82 (194)
T ss_dssp             CEEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC-------------CHHHHHHHHHHHHTTCTTEEECCGGG
T ss_pred             cEEEEEEeccccccHHHHHHHHHHHHHhCCCEEEEEECCCCC---CcCC-cCCCCHHHHHHHHHHHHcCCCCeEEeHHHh
Confidence            4789999999999999999999999988  999999987752   3432 46899999999997 68999998885432 


Q ss_pred             -----CchHHHHHHcCCc------EEEEcCCCCCC
Q 016998          332 -----EVTKDMITTFNIC------LVVHGTVSETN  355 (379)
Q Consensus       332 -----~~~~~~i~~~~~d------~vv~G~d~~~~  355 (379)
                           ..+.+.++.++..      ++|.|.|+-.+
T Consensus        83 ~~~~~~~t~~~l~~l~~~~p~~~~~~v~G~D~~~~  117 (194)
T 1kam_A           83 EREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEY  117 (194)
T ss_dssp             STTCCCSHHHHHHHHHHHSTTSEEEEEEETTTTTT
T ss_pred             cCCCCCChHHHHHHHHHHCCCCcEEEEEecchhhh
Confidence                 4677777777655      99999886543

>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*

Probab=99.12  E-value=4.4e-11  Score=107.27  Aligned_cols=92  Identities=17%  Similarity=0.114  Sum_probs=75.0

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeCCCC-
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAPW-  331 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~~~~-  331 (379)
                      ++++++.|+||++|.||+.++++|++.+  |.+++.++++..   .|+. .++++.+||+.+++ +++.+|.+.+.+.+ 
T Consensus         2 ~~i~i~~GsFDPvH~GH~~li~~a~~~~~~d~v~~~~~~~~~---~k~~-~~~~~~~~R~~ml~~~~~~~~~v~v~~~e~   77 (189)
T 2qtr_A            2 RKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPP---HKQG-RNITSVESRLQMLELATEAEEHFSICLEEL   77 (189)
T ss_dssp             CEEEEEEECCSSCCHHHHC-CHHHHHHTTCSEEEEEECSSCT---TCTT-SCCCCHHHHHHHHHHHHTTCTTEEECCTGG
T ss_pred             CeEEEEecCcccccHHHHHHHHHHHHHcCCCEEEEEECCCCC---CccC-CCCCCHHHHHHHHHHHhCCCCCEEEehHHh
Confidence            3689999999999999999999999988  999999997753   2432 46899999999997 57899999886543 


Q ss_pred             -----CchHHHHHHcCCcE------EEEcCC
Q 016998          332 -----EVTKDMITTFNICL------VVHGTV  351 (379)
Q Consensus       332 -----~~~~~~i~~~~~d~------vv~G~d  351 (379)
                           ..+.+.++.++..+      ++.|.|
T Consensus        78 ~~~~~~~~~~~l~~l~~~~p~~~~~~v~G~D  108 (189)
T 2qtr_A           78 SRKGPSYTYDTMLQLTKKYPDVQFHFIIGGD  108 (189)
T ss_dssp             GSCSCCCHHHHHHHHHHHCTTCEEEEEEEHH
T ss_pred             cCCCCCCHHHHHHHHHHHCCCCCEEEEEehh
Confidence                 57788888887665      999965

>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}

Probab=99.09  E-value=9.8e-11  Score=102.32  Aligned_cols=106  Identities=19%  Similarity=0.303  Sum_probs=76.3

Q ss_pred             EEEEcCccccCChHHHHHHHHHHhcC-CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHH-c-cC----cCceEeCCC
Q 016998          258 VVYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-C-RY----VDEVIIGAP  330 (379)
Q Consensus       258 ~v~~~G~FDl~H~GHi~~L~~A~~~g-d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~-~-~~----Vd~Vii~~~  330 (379)
                      .|++.|+||++|.||+.++++|++++ |.|+|++++|....+ |  ..|+++.+||+.+++. + +.    +.-+-+.++
T Consensus         2 ~~i~gGtFDPiH~GHl~l~~~a~~~~~d~viv~v~~~~~~~k-~--~~~~~~~~~R~~ml~~a~~~~~~~~~~i~~i~D~   78 (148)
T 3do8_A            2 KVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARA-R--IRSVLPFAIRAENVKRYVMRKYGFEPEIVKITNP   78 (148)
T ss_dssp             CEEEEECCSSCCHHHHHHHHHHHHHHTTCEEEEEECHHHHHH-H--SCCCSCHHHHHHHHHHHHHHHHSSCCEEEEECST
T ss_pred             EEEEEeeCCCCCHHHHHHHHHHHHhCCCEEEEEECCCccccc-c--CCCCCCHHHHHHHHHHHHhcccCCcEEEEeecCC
Confidence            47899999999999999999999987 999999999986532 2  1589999999988855 4 32    222334556


Q ss_pred             CCchHHHHHHcCCcEEEEcCCCCCC-CC-----CCCCc---eEEEEeee
Q 016998          331 WEVTKDMITTFNICLVVHGTVSETN-TP-----LTVSL---QFLYLPLI  370 (379)
Q Consensus       331 ~~~~~~~i~~~~~d~vv~G~d~~~~-~~-----l~~~~---evv~lp~~  370 (379)
                      ++.+.    .-++|++|.+.+.... ..     .+.|.   +++..|..
T Consensus        79 ~g~~~----~~~~d~ivvs~Et~~~~~~l~~~~~~~G~~~l~V~~v~~~  123 (148)
T 3do8_A           79 YGKTL----DVDFEYLVVSPETYEMALKINQKREELGKRKITIVKVDWM  123 (148)
T ss_dssp             TTTTT----TSCCSEEEECTTTHHHHHHHHHHHHHHTCCCCEEEEEECC
T ss_pred             CCCCC----CCCCCEEEEChhhcccHHHHHHHHHHcCCCeeEEEEeccE
Confidence            66553    4688999988765432 11     12345   77776654

>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*

Probab=99.09  E-value=8.4e-11  Score=107.99  Aligned_cols=90  Identities=16%  Similarity=0.129  Sum_probs=73.6

Q ss_pred             eE-EEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeCCCC-
Q 016998          257 RV-VYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAPW-  331 (379)
Q Consensus       257 ~~-v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~~~~-  331 (379)
                      ++ +++.|+||++|.||+.++++|++.+  |.+++.++.+..   .|.  .++++.+||+.+++ +++.+|.|.+.+.+ 
T Consensus         3 ~i~~i~~GsFdPiH~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~--~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~   77 (213)
T 1k4m_A            3 SLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPP---HRP--QPEANSVQRKHMLELAIADKPLFTLDEREL   77 (213)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCT---TSC--CCSSCHHHHHHHHHHHHTTCTTEEECCHHH
T ss_pred             eEEEEEEeCcCCCCHHHHHHHHHHHHHcCCCEEEEEECCCCC---CCC--CCCCCHHHHHHHHHHHhccCCCEEEeHHHh
Confidence            46 8999999999999999999999887  899998887743   242  36899999999997 78999999885422 


Q ss_pred             -----CchHHHHHHc----CCc---EEEEcCC
Q 016998          332 -----EVTKDMITTF----NIC---LVVHGTV  351 (379)
Q Consensus       332 -----~~~~~~i~~~----~~d---~vv~G~d  351 (379)
                           ..+.++++.+    +++   +++.|.|
T Consensus        78 ~~~~~s~t~~~l~~l~~~~~~~~~~~~i~G~D  109 (213)
T 1k4m_A           78 KRNAPSYTAQTLKEWRQEQGPDVPLAFIIGQD  109 (213)
T ss_dssp             HCSSCCCHHHHHHHHHHHHCTTSCEEEEEEHH
T ss_pred             cCCCCCcHHHHHHHHHHHhCCCCcEEEEEehh
Confidence                 4567777766    899   9999964

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.08  E-value=1.1e-09  Score=107.89  Aligned_cols=129  Identities=21%  Similarity=0.214  Sum_probs=82.1

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhh-----hccCCCCCCCHHHHHHHHhc-CccccE-EE----
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI-----IANKGPPVLSMEERLALVSG-LKWVDE-VI----  133 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i-----~~~K~~pi~t~eER~~~l~~-~~~VD~-Vv----  133 (379)
                      ++++++.|+||++|.||+.++++|++.+|+|+|++.+++..     ...+.+..++.+||++|++. ++..+. +.    
T Consensus         2 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~d~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~R~~m~~~~~~~~~~~~~v~~~   81 (365)
T 1lw7_A            2 KKVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFKYQKNQIFIHHL   81 (365)
T ss_dssp             CCEEEEEECCSSCCHHHHHHHHHHHTTCSEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTSTTTTTEEEEEE
T ss_pred             CcEEEEEEeeCCCCHHHHHHHHHHHHHCCEEEEEECCCCccccccccccccCCCCCHHHHHHHHHHHhhcCCCcEEEEEe
Confidence            35799999999999999999999999999999999998752     11111234999999999974 343222 11    


Q ss_pred             eCCCccc----c---HHHHHHHhh--ccCccEEEEcCCCCCCCCCchHHHHHHhCC-eEEEec--c-CCCCCHHHHHHHH
Q 016998          134 ANAPYAI----T---EQFMNRLFN--EHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIK--R-TEGVSSTDIVGRI  200 (379)
Q Consensus       134 ~~~p~~~----t---~efl~~ll~--~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-~~~~v~--r-~~~VSST~Ir~rI  200 (379)
                      .+.+...    .   .+.+..++.  .++++.++.++++.       .....+..+ +.+.++  + ...||||.||+..
T Consensus        82 ~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~-------~~~~~~~~~~e~v~l~~~~~~~~iSsT~IRe~~  154 (365)
T 1lw7_A           82 VEDGIPSYPNGWQSWSEAVKTLFHEKHFEPSIVFSSEPQD-------KAPYEKYLGLEVSLVDPDRTFFNVSATKIRTTP  154 (365)
T ss_dssp             ECSSSCCTTSCHHHHHHHHHHHHHHTTCCCSEEECSCGGG-------HHHHHHHTCCEEECCCSSCCSSCCCHHHHHHCG
T ss_pred             ccCCCCCCchHHHHHHHHHHHHhhccCCCCcEEEECCCCC-------HHHHHHHcCCceEEeCCcccCCCCCHHHHHhCh
Confidence            1111111    0   122333444  36788777665541       112334444 444444  2 3579999999865

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.01  E-value=1.4e-10  Score=114.38  Aligned_cols=110  Identities=19%  Similarity=0.233  Sum_probs=76.6

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcch-----hccCCCCCCCCCHHHHHHHHH-HccCcCc-eEeC
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV-----SEHRGSYHPIMHLHERSLSVL-ACRYVDE-VIIG  328 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v-----~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~-Vii~  328 (379)
                      ++++++.|+|||+|.||+.++++|++.+|+|+|++.+++.-     +..+.+ +| ++.+||+.+++ +++..+. |.+.
T Consensus         2 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~d~v~v~~~~~~~~~~~~~~~~~~~-~~-~~~~~R~~m~~~~~~~~~~~~~v~   79 (365)
T 1lw7_A            2 KKVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMK-RM-PTVQDRLRWMQQIFKYQKNQIFIH   79 (365)
T ss_dssp             CCEEEEEECCSSCCHHHHHHHHHHHTTCSEEEEEEEECHHHHHHHHHHTTCS-SC-CCHHHHHHHHHHHTSTTTTTEEEE
T ss_pred             CcEEEEEEeeCCCCHHHHHHHHHHHHHCCEEEEEECCCCccccccccccccC-CC-CCHHHHHHHHHHHhhcCCCcEEEE
Confidence            46899999999999999999999999999999999999742     111112 34 89999999984 6687766 5543


Q ss_pred             CCCC---------------chHHHHH--HcCCcEEEEcCCCCC-C--CCCCCCceEEEEee
Q 016998          329 APWE---------------VTKDMIT--TFNICLVVHGTVSET-N--TPLTVSLQFLYLPL  369 (379)
Q Consensus       329 ~~~~---------------~~~~~i~--~~~~d~vv~G~d~~~-~--~~l~~~~evv~lp~  369 (379)
                      ...+               ....+++  ..++++++.+..+.. .  ..+  +++++++|-
T Consensus        80 ~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~--~~e~v~l~~  138 (365)
T 1lw7_A           80 HLVEDGIPSYPNGWQSWSEAVKTLFHEKHFEPSIVFSSEPQDKAPYEKYL--GLEVSLVDP  138 (365)
T ss_dssp             EEECSSSCCTTSCHHHHHHHHHHHHHHTTCCCSEEECSCGGGHHHHHHHT--CCEEECCCS
T ss_pred             EeccCCCCCCchHHHHHHHHHHHHhhccCCCCcEEEECCCCCHHHHHHHc--CCceEEeCC
Confidence            2100               0112233  368888886655432 1  122  789999983

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.00  E-value=2e-09  Score=104.94  Aligned_cols=130  Identities=12%  Similarity=0.121  Sum_probs=81.1

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCc-c-----cc-EEEeC-C
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK-W-----VD-EVIAN-A  136 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~-~-----VD-~Vv~~-~  136 (379)
                      ++++++.|+||++|.||+.++++|++.+|+++|++.+++..  .+..+.++.+||++|++..- .     .. +++.. .
T Consensus         7 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~d~~~~~v~~~~~~--~~~~~~~~~~~R~~m~~~~~~~~~~~~~~~~~~~~~d   84 (352)
T 2qjt_B            7 YDISVFIGRFQPFHKGHLHNIIIALQNSKKVIINIGSCFNT--PNIKNPFSFEQRKQMIESDLQVAGIDLDTVVIEPLAD   84 (352)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHSEEEEEEEEEEESCC--CCSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEEEEC
T ss_pred             ccEEEEEEecCCCChHHHHHHHHHHHhCCcEEEEECCCCCC--cccCCCCCHHHHHHHHHHHhccccCccceEEEEEcCC
Confidence            46799999999999999999999999999999999886532  12246689999999998531 1     11 22221 1


Q ss_pred             C-cc--ccHHHHHHHhhc---cCccEEEEcCCCCCCCCCchHHHHHHhCC--eEEEeccCCCCCHHHHHHHHHh
Q 016998          137 P-YA--ITEQFMNRLFNE---HKIDYIIHGDDPCLLPDGTDAYALAKKVG--RYKQIKRTEGVSSTDIVGRILS  202 (379)
Q Consensus       137 p-~~--~t~efl~~ll~~---~~~d~VV~GdD~~~g~~g~~~y~~lk~~g--~~~~v~r~~~VSST~Ir~rI~~  202 (379)
                      . +.  ...+++++.+.+   +..+.+++|..-     +...+ .+....  ....++....+|||.||+++..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~-----~~~~~-~~~~~~~~~~~~~~~~~~iSST~IR~~~~~  152 (352)
T 2qjt_B           85 YFYQEQKWQDELRKNVYKHAKNNNSIAIVGHIK-----DSSSY-YIRSFPEWDYIGVDNYKNFNATEFRQKFYN  152 (352)
T ss_dssp             CTTCHHHHHHHHHHHHTTTSCSSCCEEECCBSS-----SSHHH-HHHHCTTSEECCBCCTTCCCHHHHHHHHHT
T ss_pred             CcCChHHHHHHHHHHHHHhcccCCeEEEEcCCC-----Ccchh-hhhcCCccceeccCCCCCCCchHHHHHHhc
Confidence            1 11  112444332221   235677777541     11222 222222  2233334467999999999985

>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A

Probab=98.91  E-value=6.7e-11  Score=113.08  Aligned_cols=128  Identities=19%  Similarity=0.172  Sum_probs=90.3

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhcc-CC--CCCCCHHHHHHHHhcCccccEEEeCCCcc-c
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KG--PPVLSMEERLALVSGLKWVDEVIANAPYA-I  140 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~-K~--~pi~t~eER~~~l~~~~~VD~Vv~~~p~~-~  140 (379)
                      -.-|.|.|+   +|.||+.||++|++.++.++|++.++|.-... ..  +.+.+.++|.++++++ +||.++. .+++ +
T Consensus        19 i~~VpTmG~---lH~GH~~Li~~A~~~a~~vVvsff~nP~qf~~~ed~~~yp~tle~d~~ll~~~-GvD~vf~-p~f~~m   93 (276)
T 1v8f_A           19 VGFVPTMGY---LHRGHLALVERARRENPFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEA-GVDLLFA-PGVEEM   93 (276)
T ss_dssp             EEEEEECSS---CCHHHHHHHHHHHHHCSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHT-TCSEEEC-CCHHHH
T ss_pred             ceEEEeCCC---ccHHHHHHHHHHHHhCCEEEEEEECCHHHhCCCcccCCCCcCHHHHHHHHHhC-CCCEEEe-CChHhC
Confidence            346789999   99999999999999999999999998864322 21  4689999999999997 7999986 2221 1


Q ss_pred             c-HHHHHHHhhccCccEEEEcC----------------------C-CCCCCCCchHHHHHHhCCe-------EE--Eecc
Q 016998          141 T-EQFMNRLFNEHKIDYIIHGD----------------------D-PCLLPDGTDAYALAKKVGR-------YK--QIKR  187 (379)
Q Consensus       141 t-~efl~~ll~~~~~d~VV~Gd----------------------D-~~~g~~g~~~y~~lk~~g~-------~~--~v~r  187 (379)
                      + ++|...++...+++.+++|.                      | ++||.++.+....+++.++       ++  +.-|
T Consensus        94 ~p~~f~~~v~~~~~~~~vl~G~~RpghF~GV~TVv~kLf~iv~Pd~~~FG~kd~qq~~~l~~~~~dl~~~v~iv~~p~vr  173 (276)
T 1v8f_A           94 YPEGFATRVQVEGPLTALWEGAVRPGHFQGVATVVARLFLLVQPQRAYFGEKDYQQLLVVRRMVRDLGFPVEVVGVPTVR  173 (276)
T ss_dssp             SCTTCCEEEEECSHHHHSTHHHHSTTHHHHHHHHHHHHHHHHCCSEEEEEGGGHHHHHHHHHHHHHHTCCCEEEEECCCB
T ss_pred             CCcCCeEEEEecCCcceEEecCCCCCeecceeehhhHhhcccCCCEEEECCCCCcCHHHHHHHHHHcCCeEEEEecCcEE
Confidence            1 12322111113455566676                      8 9999999988888887653       23  2222


Q ss_pred             C---CCCCHHHHH
Q 016998          188 T---EGVSSTDIV  197 (379)
Q Consensus       188 ~---~~VSST~Ir  197 (379)
                      .   ..+|||.|+
T Consensus       174 ~~dGlaiSSrnir  186 (276)
T 1v8f_A          174 EEDGLALSSRNVY  186 (276)
T ss_dssp             CTTSCBCCGGGGG
T ss_pred             cCCCCEeEEeEEE
Confidence            2   248999886

>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A

Probab=98.89  E-value=2.7e-09  Score=103.05  Aligned_cols=109  Identities=15%  Similarity=0.062  Sum_probs=80.7

Q ss_pred             EEEcCccccCChHHHHHHHHHHhcCCEE---EEEEecCcc--hhccCCCCCCCCCHHHHHHHHHHccCcCceEeC---CC
Q 016998          259 VYIDGAFDLFHAGHVEILKKARQLGDFL---LVGIYTDQI--VSEHRGSYHPIMHLHERSLSVLACRYVDEVIIG---AP  330 (379)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~l---iVgv~~D~~--v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~---~~  330 (379)
                      |++-|+||.+|.||..+|++|++.++.+   .|.++-|..  +.+.+ +..|+++++||+.+++++. ++.|+..   + 
T Consensus         2 vvtiG~FDgvH~GH~~ll~~a~~~a~~~~~~~vVvtFdphP~~l~~~-~~~~l~~~~eR~~ll~~lg-~~~v~~F~~~a-   78 (293)
T 1mrz_A            2 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPD-FPGLLMTVESRVEMLSRYA-RTVVLDFFRIK-   78 (293)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTT-CCCBSSCHHHHHHHHTTTS-CEEEECHHHHT-
T ss_pred             EEEEeeCccccHHHHHHHHHHHHHHHHcCCeEEEEEecCCHHHhCCC-CCCCCCCHHHHHHHHHhCC-CEEEEEhHHhh-
Confidence            6788999999999999999999988652   355555632  22212 2258999999999999998 5555543   2 


Q ss_pred             CCchHHHHHH--cCCcEEEEcCCCCCC-------CCCC-CCceEEEEeee
Q 016998          331 WEVTKDMITT--FNICLVVHGTVSETN-------TPLT-VSLQFLYLPLI  370 (379)
Q Consensus       331 ~~~~~~~i~~--~~~d~vv~G~d~~~~-------~~l~-~~~evv~lp~~  370 (379)
                      .....+|++.  ++++++|.|.||...       +.+. .+.+++.+|..
T Consensus        79 ~ls~~~Fi~~ill~~~~iVvG~Df~fG~~~~g~~~~L~~~G~~V~~v~~~  128 (293)
T 1mrz_A           79 DLTPEGFVERYLSGVSAVVVGRDFRFGKNASGNASFLRKKGVEVYEIEDV  128 (293)
T ss_dssp             TCCHHHHHHHHCTTCCEEEEETTCCBSGGGCBCHHHHHHTTCEEEEECCC
T ss_pred             cCCHHHHHHHHhcCCCEEEECCCCCCCCCCCCCHHHHHhCCCEEEEECCE
Confidence            1345788888  999999999998743       1222 68999999864

>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*

Probab=98.83  E-value=3.8e-09  Score=95.08  Aligned_cols=92  Identities=17%  Similarity=0.118  Sum_probs=70.4

Q ss_pred             eEEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeCCC---
Q 016998          257 RVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAP---  330 (379)
Q Consensus       257 ~~v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~~~---  330 (379)
                      +++++.|+||++|.||+.++++|++.+  |.+++..+.+..   .|+. .++++.++|..+++ +++..+.|.+...   
T Consensus         3 ~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~~-~~~~~~~~R~~m~~~a~~~~~~v~v~~~e~~   78 (189)
T 2h29_A            3 KIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSP---LKKH-HDFIDVQHRLTMIQMIIDELGFGDICDDEIK   78 (189)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECSBCT---TSCC-CSSCCCHHHHHHHHHHHHHHTCCEECCHHHH
T ss_pred             eEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEECCCCC---CCcC-CCCCCHHHHHHHHHHHHcCCCCEEEehHHhc
Confidence            678999999999999999999999886  888887776642   3432 47899999999887 5788887777531   


Q ss_pred             ---CCchHHHHHHc---CCc---EEEEcCCC
Q 016998          331 ---WEVTKDMITTF---NIC---LVVHGTVS  352 (379)
Q Consensus       331 ---~~~~~~~i~~~---~~d---~vv~G~d~  352 (379)
                         ...+.+.++.+   .|+   +++.|.|.
T Consensus        79 ~~~~syt~dtl~~l~~~~p~~~~~~i~G~D~  109 (189)
T 2h29_A           79 RGGQSYTYDTIKAFKEQHKDSELYFVIGTDQ  109 (189)
T ss_dssp             HCSBCCHHHHHHHHHHHSTTEEEEEEEEHHH
T ss_pred             CCCCCCHHHHHHHHHHHCCCCcEEEEEecch
Confidence               23566666543   466   89999763

>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*

Probab=98.79  E-value=4.5e-10  Score=107.68  Aligned_cols=109  Identities=17%  Similarity=0.214  Sum_probs=82.3

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCC---CCCCCHHHHHHHHhcCccccEEEeCCCc-ccc-H
Q 016998           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG---PPVLSMEERLALVSGLKWVDEVIANAPY-AIT-E  142 (379)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~---~pi~t~eER~~~l~~~~~VD~Vv~~~p~-~~t-~  142 (379)
                      |.|.|.   +|.||+.||++|++.++.++|++..+|.-...+.   +.+.+.+++.++++.+ +||.++.. ++ ++. +
T Consensus        28 VpTmG~---lH~GH~~LI~~a~~~a~~vVvsffvnP~qf~~~ed~~~yprtle~d~~ll~~~-GvD~vf~p-~~~~myp~  102 (283)
T 3ag6_A           28 IPTMGA---LHDGHLTMVRESVSTNDITIVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEV-GADIVFHP-AVEDMYPG  102 (283)
T ss_dssp             EEECSS---CCHHHHHHHHHHHTTSSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHH-TCSEEECC-CHHHHSCS
T ss_pred             EECCcc---ccHHHHHHHHHHHHhCCEEEEEEeCChhhcCCccccccCCCCHHHHHHHHHhC-CCCEEEeC-CHHHCCCC
Confidence            459997   9999999999999999999999988876322222   4588999999999997 79999972 22 111 1


Q ss_pred             HH--------HHH-HhhccCcc-------------EEEEcCCCCCCCCCchHHHHHHhCCe
Q 016998          143 QF--------MNR-LFNEHKID-------------YIIHGDDPCLLPDGTDAYALAKKVGR  181 (379)
Q Consensus       143 ef--------l~~-ll~~~~~d-------------~VV~GdD~~~g~~g~~~y~~lk~~g~  181 (379)
                      +|        +.+ +..+++|.             .+|.|+|++||.++.+....+++.++
T Consensus       103 ~f~~~v~~~~l~~~L~G~~rp~hF~GV~TVV~KLf~iV~p~~~~FG~Kd~qql~~l~~m~~  163 (283)
T 3ag6_A          103 ELGIDVKVGPLADVLEGAKRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVK  163 (283)
T ss_dssp             SCSEEEEECGGGSSTHHHHSTTHHHHHHHHHHHHHHHHCCSEEEEEGGGHHHHHHHHHHHH
T ss_pred             CceEEEeccccchhhccCCCCCeecchhhHhhhhcEEecCceEEECCCCccCHHHHHHHHH
Confidence            23        211 12237888             89999999999999988888887653

>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}

Probab=98.73  E-value=2.8e-08  Score=97.80  Aligned_cols=113  Identities=17%  Similarity=0.129  Sum_probs=85.1

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCE---EEEEEecCcchhc----cCCCCCCCCCHHHHHHHHHHccCcCceEeC
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDF---LLVGIYTDQIVSE----HRGSYHPIMHLHERSLSVLACRYVDEVIIG  328 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~---liVgv~~D~~v~~----~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~  328 (379)
                      ...|++-|+||.+|.||..+|++|++.++.   ..|.++-|..-..    .+. ..++++++||+..++++. ||.|++.
T Consensus        15 ~~~vvtiG~FDGvH~GHq~Li~~a~~~a~~~~~~~vvvtFdphP~~v~~~~~~-~~~L~~~~eR~~ll~~~g-VD~v~v~   92 (338)
T 2x0k_A           15 DNSAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRA-PLGITTLAERFALAESFG-IDGVLVI   92 (338)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCHHHHHSTTCS-CCBSSCHHHHHHHHHHTT-CSEEEEE
T ss_pred             CCeEEEEEeCCcccHHHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHcCCccC-CCCCCCHHHHHHHHHhcC-CCEEEEc
Confidence            357889999999999999999999988764   4788887763322    121 146999999999999986 9998874


Q ss_pred             CC-----CCchHHHHHH-----cCCcEEEEcCCCCCC-----------CC-CCCCceEEEEeeec
Q 016998          329 AP-----WEVTKDMITT-----FNICLVVHGTVSETN-----------TP-LTVSLQFLYLPLIN  371 (379)
Q Consensus       329 ~~-----~~~~~~~i~~-----~~~d~vv~G~d~~~~-----------~~-l~~~~evv~lp~~~  371 (379)
                      +.     .....+|++.     ++++.+|.|.|+-..           .. -. +++++.+|...
T Consensus        93 ~F~~~~a~ls~e~Fi~~il~~~l~~~~ivvG~Df~FG~~r~g~~~~L~~~~~~-g~~V~~v~~~~  156 (338)
T 2x0k_A           93 DFTRELSGTSPEKYVEFLLEDTLHASHVVVGANFTFGENAAGTADSLRQICQS-RLTVDVIDLLD  156 (338)
T ss_dssp             CTTTSSSSCCHHHHHHHCCCCCTCEEEEEEETTCEESGGGCEEHHHHHHHTTT-TSEEEEECCCE
T ss_pred             cccHHHHhCCHHHHHHHHHHhhcCCCEEEEeecCCCCCCCCCCHHHHHHHhcC-CeEEEEECcEe
Confidence            32     1245678876     689999999998632           11 23 89999998743

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=98.60  E-value=3.6e-08  Score=96.01  Aligned_cols=60  Identities=17%  Similarity=0.171  Sum_probs=50.3

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC  319 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~  319 (379)
                      ++++++.|+|||+|.||+.++++|++.+|.++|+|.++..-.+ |   ++.++.+||+.+++..
T Consensus         7 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~d~~~~~v~~~~~~~~-~---~~~~~~~~R~~m~~~~   66 (352)
T 2qjt_B            7 YDISVFIGRFQPFHKGHLHNIIIALQNSKKVIINIGSCFNTPN-I---KNPFSFEQRKQMIESD   66 (352)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHSEEEEEEEEEEESCCCC-S---SSCSCHHHHHHHHHHH
T ss_pred             ccEEEEEEecCCCChHHHHHHHHHHHhCCcEEEEECCCCCCcc-c---CCCCCHHHHHHHHHHH
Confidence            4689999999999999999999999999999999998753211 2   4567999999888543

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=98.59  E-value=7.1e-08  Score=93.27  Aligned_cols=109  Identities=17%  Similarity=0.252  Sum_probs=74.2

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cCc--CceEe--CCC
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYV--DEVII--GAP  330 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~V--d~Vii--~~~  330 (379)
                      .+++++.|+||++|.||+.++++|++.+|.++|+|.++..-.+ |   ...++.++|+.+++.. +..  +++.+  ++.
T Consensus         7 ~~~~i~~G~FdP~H~GH~~li~~a~~~~d~v~v~v~~~~~p~~-~---~~~~~~~~R~~m~~~~~~~~~~~~~~~i~~~d   82 (341)
T 2qjo_A            7 YQYGIYIGRFQPFHLGHLRTLNLALEKAEQVIIILGSHRVAAD-T---RNPWRSPERMAMIEACLSPQILKRVHFLTVRD   82 (341)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHEEEEEEEEEEETCCCC-S---SSCSCHHHHHHHHHTTSCHHHHTTEEEEEEEC
T ss_pred             eeEEEEEEEeCCCCHHHHHHHHHHHHhCCeEEEEECCcccCCC-C---CCCCCHHHHHHHHHHHhhhccCCeEEEEECCC
Confidence            4689999999999999999999999999999999998853222 2   2347999999998754 443  33333  332


Q ss_pred             C-------Cc-hHHHHHHcC---CcEEEEcCCCCCCC---CCCCCceEEEEe
Q 016998          331 W-------EV-TKDMITTFN---ICLVVHGTVSETNT---PLTVSLQFLYLP  368 (379)
Q Consensus       331 ~-------~~-~~~~i~~~~---~d~vv~G~d~~~~~---~l~~~~evv~lp  368 (379)
                      .       .. ..++++.+.   .++++-|.+.+...   ....+++++.+|
T Consensus        83 ~~~~~~~w~~~~~~l~~~l~r~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  134 (341)
T 2qjo_A           83 WLYSDNLWLAAVQQQVLKITGGSNSVVVLGHRKDASSYYLNLFPQWDYLETG  134 (341)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTTCSCEEEEECCCSGGGGGGGSCTTSEEEECC
T ss_pred             CcCChHHHHHHHHHHhHHhcCCCceEEEEcCCCCCChHHHHhccccceeecc
Confidence            1       11 123344433   67888887764332   122378888887

>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3

Probab=98.59  E-value=8.8e-08  Score=84.62  Aligned_cols=109  Identities=19%  Similarity=0.188  Sum_probs=69.2

Q ss_pred             EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcC-ceEe--CCCC--
Q 016998          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVD-EVII--GAPW--  331 (379)
Q Consensus       258 ~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd-~Vii--~~~~--  331 (379)
                      ++++.|+||++|.||+.++++|++.+|.++|++.+...  ..|.  .+.++.+||..+++ +++..+ .+.+  .+.+  
T Consensus         2 i~i~~GsFdp~H~GH~~l~~~a~~~~d~v~v~v~~~~~--p~~~--~~~~~~~~R~~m~~~~~~~~~~~v~v~~~d~l~~   77 (168)
T 1f9a_A            2 RGFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQK--SHTL--ENPFTAGERILMITQSLKDYDLTYYPIPIKDIEF   77 (168)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTC--CSSS--SCCSCHHHHHHHHHHHHTTSSCEEEEEECCCCSC
T ss_pred             EEEEEEecCCcCHHHHHHHHHHHHhCCeEEEEEcCCCC--CCCC--CCCCCHHHHHHHHHHHHhcCCCceEEEeeCCccc
Confidence            58899999999999999999999999999999943322  2232  24569999999886 567766 5543  2211  


Q ss_pred             -CchHHHHHHc--CCcEEEEcCCCCCCCCCCCCceEEEEeee
Q 016998          332 -EVTKDMITTF--NICLVVHGTVSETNTPLTVSLQFLYLPLI  370 (379)
Q Consensus       332 -~~~~~~i~~~--~~d~vv~G~d~~~~~~l~~~~evv~lp~~  370 (379)
                       ....+.++++  ..++++.|.++...-....+++++..|..
T Consensus        78 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  119 (168)
T 1f9a_A           78 NSIWVSYVESLTPPFDIVYSGNPLVRVLFEERGYEVKRPEMF  119 (168)
T ss_dssp             GGGHHHHHHHHSCCCSEEECCCHHHHHHHHHTTCEEECCCCC
T ss_pred             HHHHHHHHHHhccCCCEEEECcHHHHHhhhhcCcEEEeCCcc
Confidence             2233444443  45677666432100011235666666543

>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...

Probab=98.58  E-value=5.8e-09  Score=100.72  Aligned_cols=112  Identities=16%  Similarity=0.183  Sum_probs=79.5

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHH-cCCeEEEEEccchhhhccCC---CCCCCHHHHHHHHhcCccccEEEeCCCc-ccc
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKA-LGDELVVGVVSDEEIIANKG---PPVLSMEERLALVSGLKWVDEVIANAPY-AIT  141 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~-~~d~LiVgV~sd~~i~~~K~---~pi~t~eER~~~l~~~~~VD~Vv~~~p~-~~t  141 (379)
                      +|.+..++..+|.||+.||++|++ .++.++|.+..+|.-...+.   +.+.+.+++.++++.. +||.++.. ++ ++.
T Consensus        34 ~vg~VpTmG~LH~GH~sLI~~A~~~~a~~vVvSffvnP~qF~~~ed~~~yprtle~d~~lL~~~-GVD~vf~p-~~~~my  111 (301)
T 3cov_A           34 RVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAE-GVEIAFTP-TTAAMY  111 (301)
T ss_dssp             EEEEEEECSCCCHHHHHHHHHHHTSTTEEEEEEECCCGGGCCSSSHHHHSCCCHHHHHHHHHHT-TCCEEECC-CHHHHC
T ss_pred             cEEEEecCCcccHHHHHHHHHHHHhcCCEEEEEEcCChhhcCCccccccCCCCHHHHHHHHHhC-CCCEEEeC-CHHHCC
Confidence            455555555699999999999999 99999999988876332222   3588999999999997 79999972 22 111


Q ss_pred             -HHHHHHHhhccCccEEEEcC-----------------------CCCCCCCCchHHHHHHhCCe
Q 016998          142 -EQFMNRLFNEHKIDYIIHGD-----------------------DPCLLPDGTDAYALAKKVGR  181 (379)
Q Consensus       142 -~efl~~ll~~~~~d~VV~Gd-----------------------D~~~g~~g~~~y~~lk~~g~  181 (379)
                       ++|...+... ++..+++|.                       |+.||.++.+....+++.++
T Consensus       112 P~~f~~~v~~~-~~~~vl~G~~RPghF~GV~TVV~KLfniv~P~~a~FG~Kd~qql~~lr~mv~  174 (301)
T 3cov_A          112 PDGLRTTVQPG-PLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVA  174 (301)
T ss_dssp             TTCSCSEEECC-GGGGSGGGSSCTTHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHH
T ss_pred             CCCceEEEecC-CcceeeecCCCCChhhhhhHHHHHHhhccCCCeEEECCCcccCHHHHHHHHH
Confidence             1232211111 345667777                       99999999998888887653

>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}

Probab=98.58  E-value=6.3e-08  Score=94.02  Aligned_cols=97  Identities=20%  Similarity=0.207  Sum_probs=71.8

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEE---EEEEecCcchhcc--C---CCCCCCCCHHHHHHHHHHccCcCceEe
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFL---LVGIYTDQIVSEH--R---GSYHPIMHLHERSLSVLACRYVDEVII  327 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~l---iVgv~~D~~v~~~--K---g~~~pi~~~~eR~~~v~~~~~Vd~Vii  327 (379)
                      ...|++-|.||-+|.||..+|++|++.++.+   .|.++-|..-.+.  +   ....++++++||...++++. ||.+++
T Consensus        20 ~~~vvtiG~FDGvH~GHq~li~~a~~~a~~~~~~~vV~TFdphP~~v~~~~~~~~~~~Lt~~~eK~~ll~~lG-VD~v~~   98 (308)
T 3op1_A           20 SDSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHILNPAERERKLKREG-VEELYL   98 (308)
T ss_dssp             SCEEEEESCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEEESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHHT-CCEEEE
T ss_pred             CCeEEEEecCCcccHHHHHHHHHHHHHHHhcCCceEEEEecCCHHHHhCccccCCcccCCCHHHHHHHHHHcC-CCEEEE
Confidence            4679999999999999999999999887643   5556655422110  0   11247999999999999998 999988


Q ss_pred             CCCC-----CchHHH----HHHcCCcEEEEcCCCC
Q 016998          328 GAPW-----EVTKDM----ITTFNICLVVHGTVSE  353 (379)
Q Consensus       328 ~~~~-----~~~~~~----i~~~~~d~vv~G~d~~  353 (379)
                      .+..     ....+|    +++++++.+|.|.||-
T Consensus        99 ~~F~~~~a~ls~e~Fv~~ll~~l~~~~ivvG~Dfr  133 (308)
T 3op1_A           99 LDFSSQFASLTAQEFFATYIKAMNAKIIVAGFDYT  133 (308)
T ss_dssp             ECCCHHHHTCCHHHHHHHHHHHHTEEEEEEETTCC
T ss_pred             ecCCHHHHcCCHHHHHHHHHHHcCCCEEEECcCCC
Confidence            4421     123444    4578999999999975

>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*

Probab=98.52  E-value=1.2e-07  Score=84.84  Aligned_cols=109  Identities=17%  Similarity=0.118  Sum_probs=72.2

Q ss_pred             eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHH-ccCc----CceEeCC--
Q 016998          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYV----DEVIIGA--  329 (379)
Q Consensus       257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~-~~~V----d~Vii~~--  329 (379)
                      +++++.|+||++|.||+.++++|++.+|.++|++.++..  ..|.  .+.++.+||+.+++. ++..    |.+.+..  
T Consensus         4 ~~~i~~G~Fdp~H~GH~~l~~~a~~~~d~v~v~v~~~~~--p~~~--~~~~~~~~R~~~~~~a~~~~~~~~~~v~v~~~d   79 (181)
T 1ej2_A            4 MRGLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQL--SHSI--RDPFTAGERVMMLTKALSENGIPASRYYIIPVQ   79 (181)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTC--CSSS--SSCSCHHHHHHHHHHHHHHTTCCGGGEEEEECC
T ss_pred             eEEEEEEEcCCcCHHHHHHHHHHHHhCCeeEEEECCCCC--CcCC--CCCCCHHHHHHHHHHHHhhCCCCCCcEEEEecC
Confidence            578999999999999999999999999999999955432  2232  357799999988865 4544    4555422  


Q ss_pred             CC---CchHHHHHHc--CCcEEEEcCCCCCCCCCCCCceEEEEee
Q 016998          330 PW---EVTKDMITTF--NICLVVHGTVSETNTPLTVSLQFLYLPL  369 (379)
Q Consensus       330 ~~---~~~~~~i~~~--~~d~vv~G~d~~~~~~l~~~~evv~lp~  369 (379)
                      ..   ....++++++  ..++++-|.++...-....+++++.+|.
T Consensus        80 ~~~~~~~w~~~~~~l~~~~~~~v~gr~~~~~~~~~~~i~~~~~~~  124 (181)
T 1ej2_A           80 DIECNALWVGHIKMLTPPFDRVYSGNPLVQRLFSEDGYEVTAPPL  124 (181)
T ss_dssp             CCSCHHHHHHHHHHHSCCCSEEECCCHHHHHHHHHTTCCEECCCC
T ss_pred             ccCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHhCCeEEEecCC
Confidence            11   1233444443  6788888865311101124567776665

>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}

Probab=98.51  E-value=1.6e-07  Score=89.91  Aligned_cols=71  Identities=15%  Similarity=0.238  Sum_probs=56.9

Q ss_pred             CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEE--ecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeC
Q 016998          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGI--YTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIG  328 (379)
Q Consensus       255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv--~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~  328 (379)
                      +++++++ |+||-+|.||..+|++|++.+|.+||++  +++++........+ ..++++|+..++++. ||.|+..
T Consensus        21 g~~V~~v-gtfdgLH~GH~sLI~~A~~~ad~vVVSffvnP~qf~~~ed~~~y-p~tle~d~~lL~~~G-VD~vf~p   93 (280)
T 2ejc_A           21 KKTIGFV-PTMGYLHEGHLSLVRRARAENDVVVVSIFVNPTQFGPNEDYERY-PRDFERDRKLLEKEN-VDCIFHP   93 (280)
T ss_dssp             TCCEEEE-EECSCCCHHHHHHHHHHHHHSSEEEEEECCCGGGCCTTSCGGGS-CCCHHHHHHHHHTTT-CSEEECC
T ss_pred             CCEEEEE-cCCccccHHHHHHHHHHHHhCCEEEEEEeCChHHhcCCcccccC-CCCHHHHHHHHHHCC-CCEEEeC
Confidence            4567777 8999999999999999999999999999  55554433211224 458999999999998 9999874

>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}

Probab=98.47  E-value=1.2e-07  Score=85.10  Aligned_cols=108  Identities=14%  Similarity=0.091  Sum_probs=69.0

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHH-ccCcC--ceEeCC---
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVD--EVIIGA---  329 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~-~~~Vd--~Vii~~---  329 (379)
                      +++++.+|+|||+|.||+.+++ |.+..|.|++++..+   +..|   ++..+.++|+.+++. ++..+  .+.+.+   
T Consensus         2 ~~igi~gGsFdPih~GHl~i~~-a~~~~d~v~~~p~~~---~~~k---~~~~~~~~R~~m~~~a~~~~~~~~~~v~~~E~   74 (177)
T 3h05_A            2 KKIAIFGSAFNPPSLGHKSVIE-SLSHFDLVLLEPSIA---HAWG---KNMLDYPIRCKLVDAFIKDMGLSNVQRSDLEQ   74 (177)
T ss_dssp             CEEEEEEECCSSCCHHHHHHHT-TCTTSSEEEEEECC-------------CCCHHHHHHHHHHHHHHHCCTTEEECCHHH
T ss_pred             cEEEEEEeccchhhHHHHHHHH-HHHHCCEEEEEECCC---CCCC---CCCCCHHHHHHHHHHHHhcCCCCcEEEEehhh
Confidence            4789999999999999999998 777779999999876   2223   478999999988854 55432  444321   


Q ss_pred             -----C-CCchHHHHHHc---CCc---EEEEcCC-------CCCCCCCCCCceEEEEeee
Q 016998          330 -----P-WEVTKDMITTF---NIC---LVVHGTV-------SETNTPLTVSLQFLYLPLI  370 (379)
Q Consensus       330 -----~-~~~~~~~i~~~---~~d---~vv~G~d-------~~~~~~l~~~~evv~lp~~  370 (379)
                           . ...|.+.++.+   .|+   +++.|.|       |..-+.+-..+.++.+|++
T Consensus        75 ~l~~~~~~syT~dTl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~l~~~~~~vv~~r~  134 (177)
T 3h05_A           75 ALYQPGQSVTTYALLEKIQEIYPTADITFVIGPDNFFKFAKFYKAEEITERWTVMACPEK  134 (177)
T ss_dssp             HHC----CCCHHHHHHHHHHHSTTSEEEEEECHHHHHTGGGSTTHHHHHHHSEEEECCCS
T ss_pred             hcccCCCCcchHHHHHHHHHHhcCCCeEEEEecchhhhcccchhHHHHHHhCCEEEEcCC
Confidence                 1 23454555443   344   5788976       2222222234677777653

>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*

Probab=98.33  E-value=5.5e-07  Score=86.23  Aligned_cols=84  Identities=14%  Similarity=0.218  Sum_probs=60.4

Q ss_pred             CCeEEEEcCccccCChHHHHHHHHHHhcCC-----EEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeC
Q 016998          255 NARVVYIDGAFDLFHAGHVEILKKARQLGD-----FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIG  328 (379)
Q Consensus       255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd-----~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~  328 (379)
                      ..+++++.|+||++|.||+.++++|++.++     .++|++..-...+..|   .++.+.++|+.+++ ++...+.+.+.
T Consensus         7 ~~~i~i~gGsFDPiH~GHl~l~~~a~~~~~~d~~~~vvv~~f~P~~~~~~K---~~l~s~~~R~~ml~~ai~~~~~~~v~   83 (279)
T 1kqn_A            7 TEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKK---KGLIPAYHRVIMAELATKNSKWVEVD   83 (279)
T ss_dssp             EEEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGGGCC---TTCCCHHHHHHHHHHHTTTCSSEEEC
T ss_pred             CceEEEEEeeecHhhHHHHHHHHHHHHHhcccCCceEEEEEEcCCCCCccc---cCCCCHHHHHHHHHHHhcCCCcEEEe
Confidence            357899999999999999999999997763     3666553322222333   36899999999886 56788888775


Q ss_pred             C------CCCchHHHHHHc
Q 016998          329 A------PWEVTKDMITTF  341 (379)
Q Consensus       329 ~------~~~~~~~~i~~~  341 (379)
                      +      .+..|.+.++.+
T Consensus        84 ~~E~~~~~~syTidtL~~l  102 (279)
T 1kqn_A           84 TWESLQKEWKETLKVLRHH  102 (279)
T ss_dssp             CTGGGCSSCCCHHHHHHHH
T ss_pred             ccccccCCCCcHHHHHHHH
Confidence            3      355666666554

>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*

Probab=98.27  E-value=1.2e-06  Score=82.52  Aligned_cols=84  Identities=14%  Similarity=0.162  Sum_probs=58.9

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCE----EEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeCC-
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDF----LLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGA-  329 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~----liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~~-  329 (379)
                      .+++++.|+||++|.||+.++++|++.++.    .+||+.-.......+.  .++++.++|+.+++ +++..+.+.+.+ 
T Consensus         6 ~~i~i~~GsFdPiH~GHl~l~~~a~~~~~~~~~~~vv~~~~~p~~~~~~k--~~~~~~~~R~~m~~~ai~~~~~~~v~~~   83 (252)
T 1nup_A            6 PVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGK--KDLAASHHRVAMARLALQTSDWIRVDPW   83 (252)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTCSS--SCCCCHHHHHHHHHHHGGGCSSEEECCH
T ss_pred             ceEEEEEecCcHhhHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCcccC--CCCCCHHHHHHHHHHHhcCCCceEeehH
Confidence            468999999999999999999999987642    6765432222222221  36899999998885 677777776642 


Q ss_pred             -----CCCchHHHHHHc
Q 016998          330 -----PWEVTKDMITTF  341 (379)
Q Consensus       330 -----~~~~~~~~i~~~  341 (379)
                           .+..|.+.++.+
T Consensus        84 E~~~~~~syTidtL~~l  100 (252)
T 1nup_A           84 ESEQAQWMETVKVLRHH  100 (252)
T ss_dssp             HHHSSSCCCHHHHHHHH
T ss_pred             HhcCCCCCCHHHHHHHH
Confidence                 345666666555

>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5

Probab=98.25  E-value=6.8e-06  Score=81.06  Aligned_cols=133  Identities=16%  Similarity=0.123  Sum_probs=83.2

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCc-cc---cEE-EeCCCccc
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK-WV---DEV-IANAPYAI  140 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~-~V---D~V-v~~~p~~~  140 (379)
                      ++|++.|+||++|.||..+.++|.+..|.+++-..-.    ..| +-..+.+.|+++++.+- ..   +.+ +.-.|+++
T Consensus       156 ~~VvafqTrNPiHrgH~~l~~~ale~~d~vll~P~~g----~~K-~~d~~~~~R~~~~~~~i~~~~p~~~~~l~~~p~~m  230 (349)
T 1v47_A          156 RKVVAFQTRNAPHRAHEYLIRLGLELADGVLVHPILG----AKK-PDDFPTEVIVEAYQALIRDFLPQERVAFFGLATPM  230 (349)
T ss_dssp             CSEEEEEESSCCCHHHHHHHHHHHHHSSEEEEEEBCS----CCC-TTSCCHHHHHHHHHHHHHHHSCGGGEEECCBCSCC
T ss_pred             CeEEEeecCCCCchHHHHHHHHHHHhCCcEEEEECCC----CCC-CCCCCHHHHHHHHHHHHhhcCCCcceEEEechHHh
Confidence            3578899999999999999999999988766654422    223 45689999999998631 11   112 22233333


Q ss_pred             c-----HHHHHHHh-hccCccEEEEcCCCC--CCCCCchHHHH-HHhC---C-eEEEecc--------------------
Q 016998          141 T-----EQFMNRLF-NEHKIDYIIHGDDPC--LLPDGTDAYAL-AKKV---G-RYKQIKR--------------------  187 (379)
Q Consensus       141 t-----~efl~~ll-~~~~~d~VV~GdD~~--~g~~g~~~y~~-lk~~---g-~~~~v~r--------------------  187 (379)
                      .     +..+..++ +.+++.++++|.|..  ...-++..++. ++..   | ++..+++                    
T Consensus       231 ~~aGPreailhaiirkn~G~t~fIVGrDhag~~~~y~~~~aq~i~~~~~~l~i~~v~~~~~~Y~~~~~~~~~~~~~p~~~  310 (349)
T 1v47_A          231 RYAGPKEAVFHALVRKNFGATHFLVGRDHAGVGDFYDPYAAHRIFDRLPPLGIEIVKVGAVFHCPLCGGIASERTCPEGH  310 (349)
T ss_dssp             CCCTHHHHHHHHHHHHHTTCSEEEECTTTTCSTTCSCTTHHHHGGGGSCCCSSEEEECCCEEEETTTTEEEETTTSCGGG
T ss_pred             hcCCcHHHHHHHHHHHcCCCcEEEECcCCCCcccccCcccHHHHHHhhhhcCceEEeccccEEcccCCceEEccccCccC
Confidence            1     23445544 457999999999974  22223333333 3332   1 2222111                    


Q ss_pred             ---CCCCCHHHHHHHHHhc
Q 016998          188 ---TEGVSSTDIVGRILSS  203 (379)
Q Consensus       188 ---~~~VSST~Ir~rI~~~  203 (379)
                         .-.||||+||+++.++
T Consensus       311 ~~~~~~ISgT~iR~~L~~G  329 (349)
T 1v47_A          311 REKRTAISMTKVRALLREG  329 (349)
T ss_dssp             GGGCEECCHHHHHHHHHTT
T ss_pred             CCcccccCHHHHHHHHHCc
Confidence               0148999999999876

>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5

Probab=98.22  E-value=1.1e-05  Score=80.78  Aligned_cols=132  Identities=16%  Similarity=0.091  Sum_probs=82.1

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCc-cc---cEE-EeCCCcc
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK-WV---DEV-IANAPYA  139 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~-~V---D~V-v~~~p~~  139 (379)
                      +|++.|+||++|.||..++++|.+..  |.|++-..-.    ..| +--.+.+.|+++++.+- ..   +.+ +...|++
T Consensus       194 ~VvafqTrNPiHrgH~~l~~~Ale~~~~D~vll~P~~g----~~K-~~di~~~~R~~~~~~~~~~~~p~~~v~l~~~p~~  268 (396)
T 1jhd_A          194 KVVAFQTRNPMHRAHEELCRMAMESLDADGVVVHMLLG----KLK-KGDIPAPVRDAAIRTMAEVYFPPNTVMVTGYGFD  268 (396)
T ss_dssp             SEEEEEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEEC----CCC-TTCCCHHHHHHHHHHHHHHHSCTTCEEEEEEECC
T ss_pred             eEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEECCC----CCC-CCCCCHHHHHHHHHHHHHhcCCCcceEEEechHH
Confidence            57889999999999999999999987  7665544322    223 45688999999988631 11   111 1112232


Q ss_pred             c-----cHHHHHHHh-hccCccEEEEcCCCC--CCCCCchHHH-HHHh------CC-eEEEecc----------------
Q 016998          140 I-----TEQFMNRLF-NEHKIDYIIHGDDPC--LLPDGTDAYA-LAKK------VG-RYKQIKR----------------  187 (379)
Q Consensus       140 ~-----t~efl~~ll-~~~~~d~VV~GdD~~--~g~~g~~~y~-~lk~------~g-~~~~v~r----------------  187 (379)
                      +     ++..+..++ +.+++.++++|.|..  ...-++..++ .++.      .| +++.+++                
T Consensus       269 m~~aGPreailhaiirkn~G~t~fIVGrDhag~~~~y~~~~aq~il~~~~~~~~l~i~iv~~~~~~Y~~~~~~~~~~~~~  348 (396)
T 1jhd_A          269 MLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVGDYYGAFDAQTIFDDEVPEGAMEIEIFRADHTAYSKKLNKIVMMRDV  348 (396)
T ss_dssp             CCCCTHHHHHHHHHHHHHTTCSEEEECTTTTCCTTCSCTTHHHHHHHHTSCTTSCSCEEEECCCEEEETTTTEEEEGGGC
T ss_pred             hhcCCchHHHHHHHHHHcCCCcEEEECCCCCCccccCCcchHHHHHHhcccccccceeEEecccceecCCCCeEEEcccc
Confidence            2     133344444 457999999999984  2223333333 4443      22 3333222                


Q ss_pred             -------CCCCCHHHHHHHHHhc
Q 016998          188 -------TEGVSSTDIVGRILSS  203 (379)
Q Consensus       188 -------~~~VSST~Ir~rI~~~  203 (379)
                             ...||||+||+++.++
T Consensus       349 p~~~~~~~~~ISgT~IR~~L~~G  371 (396)
T 1jhd_A          349 PDHTKEDFVLLSGTKVREMLGQG  371 (396)
T ss_dssp             TTCCGGGEECCCHHHHHHHHHTT
T ss_pred             CcccCCCccccCHHHHHHHHHCC
Confidence                   0249999999999877

>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}

Probab=98.20  E-value=6.5e-06  Score=81.40  Aligned_cols=114  Identities=15%  Similarity=0.248  Sum_probs=79.7

Q ss_pred             CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcc--hhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCC--
Q 016998          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQI--VSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAP--  330 (379)
Q Consensus       255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~--v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~--  330 (379)
                      ++++|.+-|.||+||.||..+|++|++ .+ ++++|-+-..  +.  +|. ..+++..+|..+++.+ .||.|+..+.  
T Consensus        51 ~~~~v~~lG~FDg~H~GHq~lI~~a~~-~~-~~~~Vms~~~~~vq--rg~-~~l~~~~~R~~~~~~~-GvD~vielpF~~  124 (357)
T 3gmi_A           51 KDKIVCDFTEYNPLHKGHKYALEKGKE-HG-IFISVLPGPLERSG--RGI-PYFLNRYIRAEMAIRA-GADIVVEGPPMG  124 (357)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHHHT-SS-EEEEEECCTTSBCT--TSS-BCSSCHHHHHHHHHHH-TCSEEEECCCGG
T ss_pred             CCCEEEEEEecCccCHHHHHHHHHHHH-cC-CeEEEEcCchHHhc--CCC-CcCCCHHHHHHHHHHC-CCCEEEEcCchh
Confidence            357899999999999999999999999 55 5555555333  33  343 5799999999999998 8999888643  


Q ss_pred             CCchHHHHH-------HcCCcEEEEcCCCCCC------CCCCCCceEEEEeeecceee
Q 016998          331 WEVTKDMIT-------TFNICLVVHGTVSETN------TPLTVSLQFLYLPLINYCIC  375 (379)
Q Consensus       331 ~~~~~~~i~-------~~~~d~vv~G~d~~~~------~~l~~~~evv~lp~~~~~~~  375 (379)
                      ...+++|++       +++++.+|.|. .+..      ..+..+..+..-||...|.-
T Consensus       125 ~~s~~~Fv~~~v~ll~~l~~~~iv~G~-~~~~~~~~~~~~i~~~~~~~~kp~~~~g~e  181 (357)
T 3gmi_A          125 IMGSGQYMRCLIKMFYSLGAEIIPRGY-IPEKTMEKVIDCINKGYHIQVKPYKIICIE  181 (357)
T ss_dssp             GSCHHHHHHHHHHHHHHHTCCEEEEEE-CCCHHHHHHHHHHHTTCCEEEETTEEEETT
T ss_pred             hCCHHHHHHHHHHHHHHcCCCEEEECC-CCchhHHHHHHHHhcccccccccchhccCc
Confidence            123455655       58999999998 2221      12334444545577665543

>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0

Probab=97.59  E-value=0.0001  Score=70.44  Aligned_cols=67  Identities=19%  Similarity=0.240  Sum_probs=56.3

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhc-cCC--CCCCCHHHHHHHHhcCccccEEEe
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIA-NKG--PPVLSMEERLALVSGLKWVDEVIA  134 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~-~K~--~pi~t~eER~~~l~~~~~VD~Vv~  134 (379)
                      ++-+..+..++|.||+.||++|++.++.++|.+..+|.-.. ...  +.+.+.+++.++++.. +||.|+.
T Consensus        23 ~ig~VPTMG~LH~GH~sLi~~A~~~~d~vVvSifvnP~qf~~~ed~~~yprt~e~d~~ll~~~-GvD~vF~   92 (283)
T 3uk2_A           23 RTAFVPTMGNLHEGHLSLMRLARQHGDPVVASIFVNRLQFGPNEDFDKYPRTLQEDIEKLQKE-NVYVLFA   92 (283)
T ss_dssp             SCEEEEECSSCCHHHHHHHHHHHTTCSSEEEEECCCGGGSCTTSCTTTSCCCHHHHHHHHHTT-TCSEEEC
T ss_pred             eEEEECCCCcccHHHHHHHHHHHHhCCEEEEEEcCCHHHcCCcccccccCCCHHHHHHHHHHc-CCCEEEe
Confidence            57888999999999999999999999999999988776322 222  5688999999999997 8998875

>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}

Probab=96.91  E-value=0.0021  Score=62.13  Aligned_cols=65  Identities=23%  Similarity=0.283  Sum_probs=51.3

Q ss_pred             eEEE--EecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhh-ccCC--CCCCCHHHHHHHHhcCccccEEEe
Q 016998           66 VRVY--MDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (379)
Q Consensus        66 ~~V~--~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~-~~K~--~pi~t~eER~~~l~~~~~VD~Vv~  134 (379)
                      ++++  |.|   .+|.||+.|+++|++.+|.++|.+.-+|.=. +...  ...-++++..++++.. +||.|+.
T Consensus        44 ~IgfVPTMG---~LH~GHlsLi~~A~~~~d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~-GvD~vF~  113 (314)
T 3inn_A           44 KIGFVPTMG---YLHKGHLELVRRARVENDVTLVSIFVNPLQFGANEDLGRYPRDLERDAGLLHDA-QVDYLFA  113 (314)
T ss_dssp             CEEEEEECS---SCCHHHHHHHHHHHHHCSEEEEEECCCGGGSCTTSSTTTCCCCHHHHHHHHHHT-TCSEEEC
T ss_pred             eEEEEcCCC---ccCHHHHHHHHHHHHhCCEEEEEECCChhhcCCCccccccCCCHHHHHHHHHhC-CCCEEEC
Confidence            4566  778   5999999999999999999999988777521 2222  4567899999999986 8998875

>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A

Probab=96.79  E-value=0.0039  Score=59.42  Aligned_cols=67  Identities=18%  Similarity=0.262  Sum_probs=52.0

Q ss_pred             EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCC-CCCCCCCHHHHHHHHHHccCcCceEeC
Q 016998          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRG-SYHPIMHLHERSLSVLACRYVDEVIIG  328 (379)
Q Consensus       258 ~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg-~~~pi~~~~eR~~~v~~~~~Vd~Vii~  328 (379)
                      .|.+-|.   +|.||..++++|++.+|.++|.+..+..--.... ......++++|...++++. ||.|+..
T Consensus        21 ~VpTmG~---lH~GH~~Li~~A~~~a~~vVvsff~nP~qf~~~ed~~~yp~tle~d~~ll~~~G-vD~vf~p   88 (276)
T 1v8f_A           21 FVPTMGY---LHRGHLALVERARRENPFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEAG-VDLLFAP   88 (276)
T ss_dssp             EEEECSS---CCHHHHHHHHHHHHHCSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHTT-CSEEECC
T ss_pred             EEEeCCC---ccHHHHHHHHHHHHhCCEEEEEEECCHHHhCCCcccCCCCcCHHHHHHHHHhCC-CCEEEeC
Confidence            4666777   9999999999999999999999998854321111 1134789999999999875 9988863

>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*

Probab=96.15  E-value=0.0046  Score=59.07  Aligned_cols=65  Identities=20%  Similarity=0.177  Sum_probs=46.9

Q ss_pred             eEEE--EecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhh-ccCC--CCCCCHHHHHHHHhcCccccEEEe
Q 016998           66 VRVY--MDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (379)
Q Consensus        66 ~~V~--~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~-~~K~--~pi~t~eER~~~l~~~~~VD~Vv~  134 (379)
                      ++++  |.|+   +|.||..|+++|++.+|.++|++.-+|.=. +...  ...-++++=.++++.. +||.|+.
T Consensus        26 ~IgfVPTMG~---LH~GHlsLv~~Ar~~~d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~~l~~~-gvd~vF~   95 (287)
T 3q12_A           26 RIALVPTMGN---LHEGHMTLVDEAKTRADVVVVTIFVNPLQFERPDDLAHYPRTLQEDCEKLTRH-GADLVFA   95 (287)
T ss_dssp             CEEEEEECSS---CCHHHHHHHHHHHTTSSEEEEEECCCGGGCSSHHHHHHSCCCHHHHHHHHHHH-TCSEEEC
T ss_pred             eEEEEcCCCc---ccHHHHHHHHHHHHhCCEEEEEeccCcccCCCcchhhcCCCCHHHHHHHHHHC-CCCEEEC
Confidence            4566  8896   999999999999999999999987665310 0000  1233567777778775 7897775

>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*

Probab=96.04  E-value=0.023  Score=54.26  Aligned_cols=69  Identities=14%  Similarity=0.215  Sum_probs=51.0

Q ss_pred             CeEEE--EcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCC-CCCCCCCHHHHHHHHHHccCcCceEeC
Q 016998          256 ARVVY--IDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRG-SYHPIMHLHERSLSVLACRYVDEVIIG  328 (379)
Q Consensus       256 ~~~v~--~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg-~~~pi~~~~eR~~~v~~~~~Vd~Vii~  328 (379)
                      +++++  +-|.   +|.||..++++|++.+|.++|.+..+..--.... ......+++++...++++. ||.|+..
T Consensus        23 ~~I~fVpTmG~---lH~GH~~LI~~a~~~a~~vVvsffvnP~qf~~~ed~~~yprtle~d~~ll~~~G-vD~vf~p   94 (283)
T 3ag6_A           23 TTIGFIPTMGA---LHDGHLTMVRESVSTNDITIVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEVG-ADIVFHP   94 (283)
T ss_dssp             CCEEEEEECSS---CCHHHHHHHHHHHTTSSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHHT-CSEEECC
T ss_pred             CcEEEEECCcc---ccHHHHHHHHHHHHhCCEEEEEEeCChhhcCCccccccCCCCHHHHHHHHHhCC-CCEEEeC
Confidence            45555  6775   9999999999999999999999987743211111 0123678999999888875 9988773

>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*

Probab=95.67  E-value=0.012  Score=56.18  Aligned_cols=37  Identities=24%  Similarity=0.579  Sum_probs=32.1

Q ss_pred             CCeEEE--EcCccccCChHHHHHHHHHHhcCCEEEEEEecCc
Q 016998          255 NARVVY--IDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQ  294 (379)
Q Consensus       255 ~~~~v~--~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~  294 (379)
                      ++++++  +-|.   +|.||++++++|++.+|.+||+|.-+.
T Consensus        24 g~~IgfVPTMG~---LH~GHlsLv~~Ar~~~d~vVVSIFVNP   62 (287)
T 3q12_A           24 GKRIALVPTMGN---LHEGHMTLVDEAKTRADVVVVTIFVNP   62 (287)
T ss_dssp             TCCEEEEEECSS---CCHHHHHHHHHHHTTSSEEEEEECCCG
T ss_pred             CCeEEEEcCCCc---ccHHHHHHHHHHHHhCCEEEEEeccCc
Confidence            457777  6686   999999999999999999999998653

>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...

Probab=95.20  E-value=0.045  Score=52.69  Aligned_cols=65  Identities=15%  Similarity=0.247  Sum_probs=47.5

Q ss_pred             CccccCChHHHHHHHHHHh-cCCEEEEEEecCcchhccCCC-CCCCCCHHHHHHHHHHccCcCceEeC
Q 016998          263 GAFDLFHAGHVEILKKARQ-LGDFLLVGIYTDQIVSEHRGS-YHPIMHLHERSLSVLACRYVDEVIIG  328 (379)
Q Consensus       263 G~FDl~H~GHi~~L~~A~~-~gd~liVgv~~D~~v~~~Kg~-~~pi~~~~eR~~~v~~~~~Vd~Vii~  328 (379)
                      .++.-+|.||..++++|++ .+|.++|.+..+..---.... .....+++++...++++. ||.|+..
T Consensus        39 pTmG~LH~GH~sLI~~A~~~~a~~vVvSffvnP~qF~~~ed~~~yprtle~d~~lL~~~G-VD~vf~p  105 (301)
T 3cov_A           39 PTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAEG-VEIAFTP  105 (301)
T ss_dssp             EECSCCCHHHHHHHHHHHTSTTEEEEEEECCCGGGCCSSSHHHHSCCCHHHHHHHHHHTT-CCEEECC
T ss_pred             ecCCcccHHHHHHHHHHHHhcCCEEEEEEcCChhhcCCccccccCCCCHHHHHHHHHhCC-CCEEEeC
Confidence            4444499999999999999 999999999877532111110 013668999999888875 8988773

>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*

Probab=94.74  E-value=0.057  Score=51.47  Aligned_cols=61  Identities=21%  Similarity=0.281  Sum_probs=44.7

Q ss_pred             EEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhh-hccCC--CCCCCHHHHHHHHhcCccccEEEe
Q 016998           69 YMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI-IANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (379)
Q Consensus        69 ~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i-~~~K~--~pi~t~eER~~~l~~~~~VD~Vv~  134 (379)
                      =|.|.   +|-||+.|+++|++ +|.++|.+.-+|.= .+...  ...-++++=.++++.. +||.|+.
T Consensus        31 PTMGa---LH~GHlsLv~~Ar~-~d~VVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~-gvD~vF~   94 (285)
T 3mxt_A           31 PTMGF---LHDGHLSLVKHAKT-QDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDN-GVDMVFI   94 (285)
T ss_dssp             EECSS---CCHHHHHHHHHHTT-SSEEEEEECCCGGGCCTTSCTTTSCCCHHHHHHHHHHT-TCSEEEC
T ss_pred             cCCCc---ccHHHHHHHHHHHh-CCEEEEEeccCccccCCchhhhcCCCCHHHHHHHHHHC-CCCEEEC
Confidence            36675   99999999999999 99999988766641 11111  2344677778888876 8998775

>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5

Probab=94.31  E-value=0.56  Score=46.70  Aligned_cols=93  Identities=17%  Similarity=0.188  Sum_probs=56.4

Q ss_pred             EEEEecccCcCCHHHHHHH-HHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCcc---ccEEEe-CCCccc-
Q 016998           67 RVYMDGCFDLMHYGHANAL-RQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW---VDEVIA-NAPYAI-  140 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL-~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~---VD~Vv~-~~p~~~-  140 (379)
                      +|++..+.+++|.||..++ +.|.+.++.|++  ++  .+-..| +-=.+.+-|++..+.+--   -+.++. ..|+.+ 
T Consensus       189 ~VvafqtrNP~HraH~e~~~r~a~e~~~~lll--hP--lvG~tK-~~Dip~~vR~~~~~~~l~~yp~~~v~l~~~p~~mr  263 (395)
T 1r6x_A          189 RVVAFQTRNPMHRAHRELTVRAAREANAKVLI--HP--VVGLTK-PGDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLAMR  263 (395)
T ss_dssp             CEEEECCSSCCCHHHHHHHHHHHHHTTCEEEE--CC--BCSBCC-TTCCCHHHHHHHHHHHGGGSSTTCEEECCBCCBCC
T ss_pred             cEEEeccCCCcchhhHHHHHHHHHHcCCcEEE--EE--CCCCCC-CCCCCHHHHHHHHHHHHHhCCCccEEEEecchhhh
Confidence            5888999999999996555 455555664443  33  122222 334788999988876421   122332 223322 


Q ss_pred             ----cHHHHHHHh-hccCccEEEEcCCCC
Q 016998          141 ----TEQFMNRLF-NEHKIDYIIHGDDPC  164 (379)
Q Consensus       141 ----t~efl~~ll-~~~~~d~VV~GdD~~  164 (379)
                          .+..+..++ +.++|.++++|-|..
T Consensus       264 yAGPrEai~HAiiRkN~GcthfIVGRDhA  292 (395)
T 1r6x_A          264 MSGDREAVWHAIIRKNYGASHFIVGRDHA  292 (395)
T ss_dssp             CCHHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred             hcCcHHHHHHHHHHHHcCCceEEECCCCC
Confidence                133344544 458999999999974

>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}

Probab=94.19  E-value=0.15  Score=49.23  Aligned_cols=68  Identities=22%  Similarity=0.344  Sum_probs=46.9

Q ss_pred             CCeEEE--EcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhc--cCCCCCCCCCHHHHHHHHHHccCcCceEe
Q 016998          255 NARVVY--IDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSE--HRGSYHPIMHLHERSLSVLACRYVDEVII  327 (379)
Q Consensus       255 ~~~~v~--~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~--~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii  327 (379)
                      ++++++  +-|.   +|.||++++++|++.+|.+||.|.-+..=-.  .--..||- ++++.+..+++. .||.|+.
T Consensus        42 g~~IgfVPTMG~---LH~GHlsLi~~A~~~~d~vVVSIFVNP~QF~~~EDl~~YPR-tle~D~~ll~~~-GvD~vF~  113 (314)
T 3inn_A           42 GKKIGFVPTMGY---LHKGHLELVRRARVENDVTLVSIFVNPLQFGANEDLGRYPR-DLERDAGLLHDA-QVDYLFA  113 (314)
T ss_dssp             TCCEEEEEECSS---CCHHHHHHHHHHHHHCSEEEEEECCCGGGSCTTSSTTTCCC-CHHHHHHHHHHT-TCSEEEC
T ss_pred             CCeEEEEcCCCc---cCHHHHHHHHHHHHhCCEEEEEECCChhhcCCCccccccCC-CHHHHHHHHHhC-CCCEEEC
Confidence            467777  6674   9999999999999999999999986642110  00011343 677777766665 5786654

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=94.08  E-value=0.76  Score=47.21  Aligned_cols=93  Identities=18%  Similarity=0.186  Sum_probs=57.7

Q ss_pred             EEEEecccCcCCHHHHHHH-HHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCcc---ccEEEe-CCCcccc
Q 016998           67 RVYMDGCFDLMHYGHANAL-RQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW---VDEVIA-NAPYAIT  141 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL-~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~---VD~Vv~-~~p~~~t  141 (379)
                      +|+...+.+++|.||..++ +.|.+.++.|++-..-    -..| +-=.+.+-|++..+.+--   -+.++. -.|+.+-
T Consensus       190 ~v~afqtrnP~HraH~e~~~~~a~e~~~~lll~pl~----g~~k-~~di~~~~r~~~~~~~~~~yp~~~~~l~~~p~~m~  264 (511)
T 1g8f_A          190 RVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPVV----GLTK-PGDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLAMR  264 (511)
T ss_dssp             CEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEEEBC----SBCS-TTCCCHHHHHHHHHHHGGGSCTTSEEECCBCCBCC
T ss_pred             cEEEEecCCCCchHHHHHHHHHHHHcCCcEEEEECC----CCCC-CCCCCHHHHHHHHHHHHHhCCcccEEEEecchhhh
Confidence            5888999999999995555 5566657755553332    1122 334788999988876421   122222 2344321


Q ss_pred             -----HHHHHHHh-hccCccEEEEcCCCC
Q 016998          142 -----EQFMNRLF-NEHKIDYIIHGDDPC  164 (379)
Q Consensus       142 -----~efl~~ll-~~~~~d~VV~GdD~~  164 (379)
                           +..+..++ +.++|.++++|-|..
T Consensus       265 yaGprea~~hai~r~n~G~th~IvGrdhA  293 (511)
T 1g8f_A          265 MSGDREAVWHAIIRKNYGASHFIVGRDHA  293 (511)
T ss_dssp             CCHHHHHHHHHHHHHHTTCSEEECCTTTT
T ss_pred             ccCcHHHHHHHHHHHhCCCceEEeCCCCC
Confidence                 33344544 459999999999974

>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*

Probab=94.03  E-value=0.086  Score=49.64  Aligned_cols=67  Identities=15%  Similarity=0.289  Sum_probs=45.9

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhh-ccCC--CCCCCHHHHHHHHhcCccccEEEe
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~-~~K~--~pi~t~eER~~~l~~~~~VD~Vv~  134 (379)
                      ++-..-+--.+|-||+.|+++|++.+|.++|.+.-+|.=. +...  ...-++++=.++++.. +||.|+.
T Consensus        25 ~ig~VPTMGaLH~GHlsLv~~Ar~~~d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~-gvD~vF~   94 (264)
T 3n8h_A           25 KIGFVPTMGALHNGHISLIKKAKSENDVVIVSIFVNPTQFNNPNDYQTYPNQLQQDIQILASL-DVDVLFN   94 (264)
T ss_dssp             CEEEEEECSSCCHHHHHHHHHHHHHCSEEEEEECCCGGGCSCHHHHHHSCCCHHHHHHHHHHT-TCSEEEC
T ss_pred             cEEEECCCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCCCcchhhcCCCCHHHHHHHHHHC-CCCEEEC
Confidence            3444455558999999999999999999998887665310 0000  1223567777777775 7887775

>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5

Probab=94.02  E-value=0.32  Score=47.63  Aligned_cols=88  Identities=14%  Similarity=0.048  Sum_probs=58.3

Q ss_pred             EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-c-CcCc--eEeC-CC---
Q 016998          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-R-YVDE--VIIG-AP---  330 (379)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~-~Vd~--Vii~-~~---  330 (379)
                      |+--|+|||+|.||..+.++|.+..|.|++--.-.    ..|   .--.+.+-|+++++.+ + |.+.  |++. .|   
T Consensus       158 VvafqTrNPiHrgH~~l~~~ale~~d~vll~P~~g----~~K---~~d~~~~~R~~~~~~~i~~~~p~~~~~l~~~p~~m  230 (349)
T 1v47_A          158 VVAFQTRNAPHRAHEYLIRLGLELADGVLVHPILG----AKK---PDDFPTEVIVEAYQALIRDFLPQERVAFFGLATPM  230 (349)
T ss_dssp             EEEEEESSCCCHHHHHHHHHHHHHSSEEEEEEBCS----CCC---TTSCCHHHHHHHHHHHHHHHSCGGGEEECCBCSCC
T ss_pred             EEEeecCCCCchHHHHHHHHHHHhCCcEEEEECCC----CCC---CCCCCHHHHHHHHHHHHhhcCCCcceEEEechHHh
Confidence            44489999999999999999999899776644322    223   2357999999888766 3 3243  4331 11   


Q ss_pred             --CCchHH-----HHHHcCCcEEEEcCCCC
Q 016998          331 --WEVTKD-----MITTFNICLVVHGTVSE  353 (379)
Q Consensus       331 --~~~~~~-----~i~~~~~d~vv~G~d~~  353 (379)
                        .+.+.-     +-+.+++..++-|.|..
T Consensus       231 ~~aGPreailhaiirkn~G~t~fIVGrDha  260 (349)
T 1v47_A          231 RYAGPKEAVFHALVRKNFGATHFLVGRDHA  260 (349)
T ss_dssp             CCCTHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred             hcCCcHHHHHHHHHHHcCCCcEEEECcCCC
Confidence              122222     22446899999998754

>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5

Probab=94.02  E-value=0.27  Score=49.00  Aligned_cols=89  Identities=12%  Similarity=0.070  Sum_probs=57.1

Q ss_pred             EEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-c-CcCc--eEe--C-
Q 016998          258 VVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-R-YVDE--VII--G-  328 (379)
Q Consensus       258 ~v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~-~Vd~--Vii--~-  328 (379)
                      .|+-.|+||++|.||..+.+.|.+..  |.|++--.-.    ..|   .--.+.+.|+++++.+ + |.+.  |++  . 
T Consensus       194 ~VvafqTrNPiHrgH~~l~~~Ale~~~~D~vll~P~~g----~~K---~~di~~~~R~~~~~~~~~~~~p~~~v~l~~~p  266 (396)
T 1jhd_A          194 KVVAFQTRNPMHRAHEELCRMAMESLDADGVVVHMLLG----KLK---KGDIPAPVRDAAIRTMAEVYFPPNTVMVTGYG  266 (396)
T ss_dssp             SEEEEEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEEC----CCC---TTCCCHHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             eEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEECCC----CCC---CCCCCHHHHHHHHHHHHHhcCCCcceEEEech
Confidence            35559999999999999999999876  7665443322    223   2357889999888765 3 3233  332  1 


Q ss_pred             CC---CCchHH-----HHHHcCCcEEEEcCCCC
Q 016998          329 AP---WEVTKD-----MITTFNICLVVHGTVSE  353 (379)
Q Consensus       329 ~~---~~~~~~-----~i~~~~~d~vv~G~d~~  353 (379)
                      .+   .+.+..     +-+.+++..++-|.|..
T Consensus       267 ~~m~~aGPreailhaiirkn~G~t~fIVGrDha  299 (396)
T 1jhd_A          267 FDMLYAGPREAVLHAYFRQNMGATHFIIGRDHA  299 (396)
T ss_dssp             CCCCCCTHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred             HHhhcCCchHHHHHHHHHHcCCCcEEEECCCCC
Confidence            11   222222     22446889999998754

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=92.96  E-value=0.4  Score=49.62  Aligned_cols=92  Identities=20%  Similarity=0.205  Sum_probs=58.5

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHH-cCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCc----cccEEEe-CCCcc-
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKA-LGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK----WVDEVIA-NAPYA-  139 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~-~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~----~VD~Vv~-~~p~~-  139 (379)
                      +|+..=++.++|.||..++++|.. .++.|+|-+.-    -..| +-=.+.+-|++-++.+-    --+.++. ..|.. 
T Consensus       165 ~v~afqtrnP~Hr~H~~l~~~a~~~~~~~llv~p~~----g~~k-~~di~~~~R~~~~~~~~~~~~p~~~v~~~~~p~~m  239 (546)
T 2gks_A          165 KIVAFQTRNPMHRVHEELTKRAMEKVGGGLLLHPVV----GLTK-PGDVDVYTRMRIYKVLYEKYYDKKKTILAFLPLAM  239 (546)
T ss_dssp             CEEEECCSSCCCHHHHHHHHHHHHHHTSEEEECCBC----SBCC-TTSCCHHHHHHHHHHHHHHHSCTTTEEECBBCCBC
T ss_pred             cEEEEecCCCCcHHHHHHHHHHHHhcCCcEEEEeCc----CCCC-CCCCCHHHHHHHHHHHHHhcCCCCcEEEeecCchh
Confidence            588899999999999999999996 67766553221    1122 23468899998887641    1122222 22322 


Q ss_pred             -cc---HHHHHHHh-hccCccEEEEcCCC
Q 016998          140 -IT---EQFMNRLF-NEHKIDYIIHGDDP  163 (379)
Q Consensus       140 -~t---~efl~~ll-~~~~~d~VV~GdD~  163 (379)
                       +.   +.-...++ +.++|.++++|-|.
T Consensus       240 ~~agprea~~ha~ir~n~G~th~ivgrdh  268 (546)
T 2gks_A          240 RMAGPREALWHGIIRRNYGATHFIVGRDH  268 (546)
T ss_dssp             CCCTHHHHHHHHHHHHHTTCSEEEECTTT
T ss_pred             hccCchHHHHHHHHHHhCCCCeEEECCCC
Confidence             11   23334444 56899999999776

>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*

Probab=92.10  E-value=0.1  Score=49.13  Aligned_cols=38  Identities=24%  Similarity=0.655  Sum_probs=30.8

Q ss_pred             CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecC
Q 016998          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTD  293 (379)
Q Consensus       255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D  293 (379)
                      ++++.+++ |---+|.||++++++|++.+|.+||.|.-+
T Consensus        23 g~~ig~VP-TMGaLH~GHlsLv~~Ar~~~d~vVVSIFVN   60 (264)
T 3n8h_A           23 QQKIGFVP-TMGALHNGHISLIKKAKSENDVVIVSIFVN   60 (264)
T ss_dssp             TSCEEEEE-ECSSCCHHHHHHHHHHHHHCSEEEEEECCC
T ss_pred             CCcEEEEC-CCcchhHHHHHHHHHHHHhCCEEEEEEccC
Confidence            45666554 333699999999999999999999999865

>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*

Probab=92.00  E-value=0.28  Score=46.71  Aligned_cols=66  Identities=26%  Similarity=0.373  Sum_probs=41.5

Q ss_pred             CCeEEEE--cCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCC---CCCCCCCHHHHHHHHHHccCcCceEe
Q 016998          255 NARVVYI--DGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRG---SYHPIMHLHERSLSVLACRYVDEVII  327 (379)
Q Consensus       255 ~~~~v~~--~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg---~~~pi~~~~eR~~~v~~~~~Vd~Vii  327 (379)
                      ++++.++  =|.   +|.||++++++|++ +|.+||.|.-+..=-. .+   ..||- ++++=+..+++. .||-|+.
T Consensus        24 g~~Ig~VPTMGa---LH~GHlsLv~~Ar~-~d~VVVSIFVNP~QF~-~~EDl~~YPR-tle~D~~ll~~~-gvD~vF~   94 (285)
T 3mxt_A           24 QLSIGYVPTMGF---LHDGHLSLVKHAKT-QDKVIVSIFVNPMQFG-PNEDFSSYPR-DLERDIKMCQDN-GVDMVFI   94 (285)
T ss_dssp             TCCEEEEEECSS---CCHHHHHHHHHHTT-SSEEEEEECCCGGGCC-TTSCTTTSCC-CHHHHHHHHHHT-TCSEEEC
T ss_pred             CCeEEEEcCCCc---ccHHHHHHHHHHHh-CCEEEEEeccCccccC-CchhhhcCCC-CHHHHHHHHHHC-CCCEEEC
Confidence            3456654  364   99999999999999 9999999986532100 00   01444 455444444444 5775554

>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0

Probab=90.87  E-value=0.47  Score=45.13  Aligned_cols=71  Identities=18%  Similarity=0.268  Sum_probs=49.8

Q ss_pred             CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhcc-CCCCCCCCCHHHHHHHHHHccCcCceEe
Q 016998          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEH-RGSYHPIMHLHERSLSVLACRYVDEVII  327 (379)
Q Consensus       255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~-Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii  327 (379)
                      +++++++ .+..-+|.||..++++|++.+|.++|.+..+..--.. ........+++++...++++ .||.|+.
T Consensus        21 g~~ig~V-PTMG~LH~GH~sLi~~A~~~~d~vVvSifvnP~qf~~~ed~~~yprt~e~d~~ll~~~-GvD~vF~   92 (283)
T 3uk2_A           21 QNRTAFV-PTMGNLHEGHLSLMRLARQHGDPVVASIFVNRLQFGPNEDFDKYPRTLQEDIEKLQKE-NVYVLFA   92 (283)
T ss_dssp             CSSCEEE-EECSSCCHHHHHHHHHHHTTCSSEEEEECCCGGGSCTTSCTTTSCCCHHHHHHHHHTT-TCSEEEC
T ss_pred             CCeEEEE-CCCCcccHHHHHHHHHHHHhCCEEEEEEcCCHHHcCCcccccccCCCHHHHHHHHHHc-CCCEEEe
Confidence            3444444 5788899999999999999999999999876542110 01013456888888877765 5776655

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=90.35  E-value=0.89  Score=47.26  Aligned_cols=92  Identities=18%  Similarity=0.142  Sum_probs=56.6

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHc-CCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCc---cccEEEe-CCCcc--
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKAL-GDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK---WVDEVIA-NAPYA--  139 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~-~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~---~VD~Vv~-~~p~~--  139 (379)
                      +|++.=+++++|.||..++++|... ++.|+|-+.    +-..| +-=.+.+-|++-++.+-   --+.++. ..|..  
T Consensus       192 ~v~afqtrnP~Hr~H~~l~~~a~~~~~~~llv~pl----~g~~k-~~di~~~~R~~~~~~~~~~~p~~~v~l~~~p~~m~  266 (573)
T 1m8p_A          192 RVVAFQTRNPMHRAHRELTVRAARSRQANVLIHPV----VGLTK-PGDIDHFTRVRAYQALLPRYPNGMAVLGLLGLAMR  266 (573)
T ss_dssp             SEEEECCSSCCCHHHHHHHHHHHHHTTCEEEECCB----CCCCC-TTCHHHHHHHHHHHHHGGGSSTTSEEECBBCCCCC
T ss_pred             eEEEEeeCCCcchhhHHHHHHHHHhcCCcEEEEeC----CCCCC-CCCCCHHHHHHHHHHHHHhCCCCcEEEEecCchhh
Confidence            4778999999999999999998865 775555321    11112 23357788888877641   1122332 12322  


Q ss_pred             cc---HHHHHHHh-hccCccEEEEcCCC
Q 016998          140 IT---EQFMNRLF-NEHKIDYIIHGDDP  163 (379)
Q Consensus       140 ~t---~efl~~ll-~~~~~d~VV~GdD~  163 (379)
                      +.   +.....++ +.++|.++++|-|.
T Consensus       267 ~agprea~~ha~ir~n~G~th~ivgrdh  294 (573)
T 1m8p_A          267 MGGPREAIWHAIIRKNHGATHFIVGRDH  294 (573)
T ss_dssp             CCHHHHHHHHHHHHHHHTCSEEEECTTT
T ss_pred             ccCchHHHHHHHHHHHCCCCeEEECCCC
Confidence            11   22333433 56899999999875

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=87.19  E-value=4.3  Score=41.92  Aligned_cols=93  Identities=8%  Similarity=0.012  Sum_probs=55.0

Q ss_pred             EEEEecccCcCCHHHHHHHHHHH-HcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCc---cccEEEe-CCCccc-
Q 016998           67 RVYMDGCFDLMHYGHANALRQAK-ALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK---WVDEVIA-NAPYAI-  140 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~-~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~---~VD~Vv~-~~p~~~-  140 (379)
                      +|+..=+-+++|.||..++++|. +.++.|++  ++  .+-. +++-=.+.+-|++..+.+.   --+.++. -.|+.+ 
T Consensus       165 ~v~afqtrnp~Hrah~~~~~~~~~~~~~~lll--~p--l~g~-~k~~d~~~~~r~~~~~~~~~~~p~~~~~l~~~p~~m~  239 (552)
T 3cr8_A          165 RIIAWQARQPMHRAQYEFCLKSAIENEANLLL--HP--QVGG-DITEAPAYFGLVRSFLAIRDRFPAATTQLSLLPAPPP  239 (552)
T ss_dssp             SEEEECCSSCCCHHHHHHHHHHHHHTTCEEEE--CC--BCCC-CTTTCTTHHHHHHHHHHHGGGSCGGGEEECBBCSCCC
T ss_pred             ceEEEecCCCCchHHHHHHHHHHHhcCCeEEE--Ee--ccCC-CCCCCCCHHHHHHHHHHHHHhCCCccEEEeecchhhc
Confidence            57777999999999999999998 66774444  33  1211 2234567888888877641   1222331 233322 


Q ss_pred             ----cHHHHHHHh-hccCccEEEEcCCCC
Q 016998          141 ----TEQFMNRLF-NEHKIDYIIHGDDPC  164 (379)
Q Consensus       141 ----t~efl~~ll-~~~~~d~VV~GdD~~  164 (379)
                          .+.-+..++ +.|+|.++++|-|..
T Consensus       240 ~agprea~~ha~~r~n~G~th~ivGrdha  268 (552)
T 3cr8_A          240 EASGRALLLRAIVARNFGCSLLIAGGEHQ  268 (552)
T ss_dssp             CSCSHHHHHHHHHHHHHTCSEEEC-----
T ss_pred             ccCcHHHHHHHHHHHhCCCCeeeeCCCCC
Confidence                134445544 458999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	379
d1coza_	126	c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltr	1e-20
d1coza_	126	c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltr	1e-11
d1lw7a1	163	c.26.1.3 (A:57-219) Transcriptional regulator NadR	1e-12
d1lw7a1	163	c.26.1.3 (A:57-219) Transcriptional regulator NadR	1e-06
d1f9aa_	164	c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad	7e-04
d1f9aa_	164	c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad	0.004
d1ej2a_	167	c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad	0.002
d1tfua_	157	c.26.1.3 (A:) Phosphopantetheine adenylyltransfera	0.003

>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]} Length = 126

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]

 Score = 84.2 bits (207), Expect = 1e-20
 Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 10/134 (7%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           +V   G FDL+H+GH   L +AK LGD LVV + +DE  +  +     S E R  ++  +
Sbjct: 3   KVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETI 62

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK 186
           ++VDEVI    +   +Q +     +H ID  + G       D    +   K       + 
Sbjct: 63  RYVDEVIPEKNWEQKKQDI----IDHNIDVFVMG------DDWEGKFDFLKDQCEVVYLP 112

Query: 187 RTEGVSSTDIVGRI 200
           RTEG+S+T I   I
Sbjct: 113 RTEGISTTKIKEEI 126

>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]} Length = 126

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]

 Score = 59.5 bits (143), Expect = 1e-11
 Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV 316
           + V   G FDL H GH+++L++A+QLGD+L+V I TD+     +           R L +
Sbjct: 2   KKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEF--NLQKQKKAYHSYEHRKLIL 59

Query: 317 LACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 349
              RYVDEVI    WE  K  I   NI + V G
Sbjct: 60  ETIRYVDEVIPEKNWEQKKQDIIDHNIDVFVMG 92

>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Transcriptional regulator NadR, NMN-adenylyltransferase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 63.3 bits (153), Expect = 1e-12
 Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 18/151 (11%)

Query: 63  KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGP-----PVLSME 117
           +K+V V   G F  +H GH N + +A +  DEL V V SD               + +++
Sbjct: 1   EKKVGVIF-GKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQ 59

Query: 118 ERLALVSGLKWVDEVI--------ANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDG 169
           +RL  +  +    +             P             +                + 
Sbjct: 60  DRLRWMQQIFKYQKNQIFIHHLVEDGIPSYPNGWQSWSEAVKTLFHEKHFEPSIVFSSEP 119

Query: 170 TDAYALAKKVGRYKQI----KRTEGVSSTDI 196
            D     K +G    +    +    VS+T I
Sbjct: 120 QDKAPYEKYLGLEVSLVDPDRTFFNVSATKI 150

>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Transcriptional regulator NadR, NMN-adenylyltransferase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQ---IVSEHRGSYHPIMHLHERS 313
           +V  I G F   H GH+ ++ +A    D L V + +D    +   +      +  + +R 
Sbjct: 3   KVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRL 62

Query: 314 LSVLACRYVDEVII 327
             +       +  I
Sbjct: 63  RWMQQIFKYQKNQI 76

>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 164

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 19/142 (13%), Positives = 48/142 (33%), Gaps = 14/142 (9%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           R ++ G F   H GH   +++     DE+++G+ S ++   +      +  ER      +
Sbjct: 2   RGFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKS--HTLENPFTAGER------I 53

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK--KVGRYKQ 184
             + + + +         +  +         +    P      +    +    +   Y+ 
Sbjct: 54  LMITQSLKDYDLTYYPIPIKDIEFNSIWVSYVESLTPPFDIVYSGNPLVRVLFEERGYEV 113

Query: 185 I----KRTEGVSSTDIVGRILS 202
                   +  S T+I  R+L+
Sbjct: 114 KRPEMFNRKEYSGTEIRRRMLN 135

>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 164

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLH 310
           R   I G F  FH GH+E++KK  +  D +++GI + Q        +     + 
Sbjct: 2   RGFII-GRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKSHTLENPFTAGERIL 54

>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQ 294
           R + + G    FH GH++++K   +  D L++ I + Q
Sbjct: 2   RGLLV-GRMQPFHRGHLQVIKSILEEVDELIICIGSAQ 38

>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 157

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 16/93 (17%), Positives = 30/93 (32%)

Query: 263 GAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYV 322
           G+FD    GHV+I ++A    D ++V I  +   +        I  + E +  +   R  
Sbjct: 8   GSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGMFDLDERIAMVKESTTHLPNLRVQ 67

Query: 323 DEVIIGAPWEVTKDMITTFNICLVVHGTVSETN 355
               +   +  +  M               E  
Sbjct: 68  VGHGLVVDFVRSCGMTAIVKGLRTGTDFEYELQ 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	379
d1coza_	126	CTP:glycerol-3-phosphate cytidylyltransferase {Bac	99.96
d1coza_	126	CTP:glycerol-3-phosphate cytidylyltransferase {Bac	99.95
d1mrza2	157	FMN adenylyltransferase domain of bifunctional FAD	99.85
d1f9aa_	164	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.44
d1lw7a1	163	Transcriptional regulator NadR, NMN-adenylyltransf	99.37
d1ej2a_	167	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.33
d1tfua_	157	Phosphopantetheine adenylyltransferase {Mycobacter	99.2
d1qjca_	157	Phosphopantetheine adenylyltransferase {Escherichi	99.18
d1od6a_	160	Phosphopantetheine adenylyltransferase {Thermus th	99.11
d1kr2a_	271	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.11
d1o6ba_	163	Phosphopantetheine adenylyltransferase {Bacillus s	99.08
d1kama_	189	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.05
d1k4ma_	213	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.02
d1vlha_	157	Phosphopantetheine adenylyltransferase {Thermotoga	98.98
d1jhda2	223	ATP sulfurylase catalytic domain {Sulfur-oxidizing	98.97
d1nuua_	233	Cytosolic NMN/NAMN adenylyltransferase {Human (Hom	98.97
d1lw7a1	163	Transcriptional regulator NadR, NMN-adenylyltransf	98.94
d1f9aa_	164	Nicotinamide mononucleotide (NMN) adenylyltransfer	98.87
d1od6a_	160	Phosphopantetheine adenylyltransferase {Thermus th	98.76
d1qjca_	157	Phosphopantetheine adenylyltransferase {Escherichi	98.75
d1ej2a_	167	Nicotinamide mononucleotide (NMN) adenylyltransfer	98.69
d1o6ba_	163	Phosphopantetheine adenylyltransferase {Bacillus s	98.62
d1tfua_	157	Phosphopantetheine adenylyltransferase {Mycobacter	98.41
d1vlha_	157	Phosphopantetheine adenylyltransferase {Thermotoga	98.36
d1kama_	189	Nicotinamide mononucleotide (NMN) adenylyltransfer	98.14
d1mrza2	157	FMN adenylyltransferase domain of bifunctional FAD	98.05
d1nuua_	233	Cytosolic NMN/NAMN adenylyltransferase {Human (Hom	97.96
d1k4ma_	213	Nicotinamide mononucleotide (NMN) adenylyltransfer	97.84
d1kr2a_	271	Nicotinamide mononucleotide (NMN) adenylyltransfer	97.73
d1jhda2	223	ATP sulfurylase catalytic domain {Sulfur-oxidizing	97.2
d1v8fa_	276	Pantothenate synthetase (Pantoate-beta-alanine lig	95.9
d1v47a2	214	ATP sulfurylase catalytic domain {Thermus thermoph	95.84
d1ihoa_	282	Pantothenate synthetase (Pantoate-beta-alanine lig	95.49
d1x6va2	235	ATP sulfurylase catalytic domain {Human (Homo sapi	95.43
d1g8fa2	221	ATP sulfurylase catalytic domain {Baker's yeast (S	95.39
d2a84a1	286	Pantothenate synthetase (Pantoate-beta-alanine lig	93.51
d1v8fa_	276	Pantothenate synthetase (Pantoate-beta-alanine lig	92.25
d1ihoa_	282	Pantothenate synthetase (Pantoate-beta-alanine lig	91.57
d2a84a1	286	Pantothenate synthetase (Pantoate-beta-alanine lig	88.63

>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.96  E-value=3.7e-30  Score=217.82  Aligned_cols=126  Identities=34%  Similarity=0.495  Sum_probs=112.2

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccccHHH
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~ef  144 (379)
                      |++|++.|+||++|.||+++|++|+++||+|+||+++|+.+..+|++|++|++||++++++|+|||+|++..|++...++
T Consensus         1 Mk~V~~~G~FD~lH~GH~~~l~~Ak~~gd~liV~v~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~v~~~~~~~~~~~~   80 (126)
T d1coza_           1 MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEVIPEKNWEQKKQD   80 (126)
T ss_dssp             CCEEEEEECCCSCCHHHHHHHHHHHTTSSEEEEEEECHHHHHHHTCCCSSCHHHHHHHHTTBTTCCEEEEECCSTTHHHH
T ss_pred             CcEEEEeeEeCCCCHHHHHHHHHHHhhCceeeeeeeccchhhhccCcccCCHHHHHHHhhhhcccceeeecccccccHhh
Confidence            67999999999999999999999999999999999999988777889999999999999999999999998877655555


Q ss_pred             HHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 016998          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRI  200 (379)
Q Consensus       145 l~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI  200 (379)
                      +    .+++||++++|+||..      .+..++..++++.+++++++|||.||+||
T Consensus        81 i----~~~~~d~~v~G~D~~~------~~~~~~~~~~~i~~~~~~~iSST~i~~~I  126 (126)
T d1coza_          81 I----IDHNIDVFVMGDDWEG------KFDFLKDQCEVVYLPRTEGISTTKIKEEI  126 (126)
T ss_dssp             H----HHTTCSEEEEEGGGTT------TTGGGTTTSEEEEECCCTTCCHHHHHHTC
T ss_pred             h----hccCCCEeeecccccc------chHHHHcCCEEEEECCCCCccHHHHHHhC
Confidence            4    4679999999999842      23456788999999999999999999975

>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.95  E-value=1.6e-28  Score=207.68  Aligned_cols=117  Identities=35%  Similarity=0.508  Sum_probs=108.2

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchH
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK  335 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~  335 (379)
                      .|+|++.|+||+||.||+++|++|+++||+|+|||++|+.+.++|+  +|++|++||++++++|+|||+|++..++..+.
T Consensus         1 Mk~V~~~G~FD~lH~GH~~~l~~Ak~~gd~liV~v~sD~~~~~~k~--~pi~~~~eR~~~l~~~~~Vd~v~~~~~~~~~~   78 (126)
T d1coza_           1 MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQK--KAYHSYEHRKLILETIRYVDEVIPEKNWEQKK   78 (126)
T ss_dssp             CCEEEEEECCCSCCHHHHHHHHHHHTTSSEEEEEEECHHHHHHHTC--CCSSCHHHHHHHHTTBTTCCEEEEECCSTTHH
T ss_pred             CcEEEEeeEeCCCCHHHHHHHHHHHhhCceeeeeeeccchhhhccC--cccCCHHHHHHHhhhhcccceeeecccccccH
Confidence            3689999999999999999999999999999999999999887675  69999999999999999999999999999999


Q ss_pred             HHHHHcCCcEEEEcCCCCCC-CCCCCCceEEEEeeeccee
Q 016998          336 DMITTFNICLVVHGTVSETN-TPLTVSLQFLYLPLINYCI  374 (379)
Q Consensus       336 ~~i~~~~~d~vv~G~d~~~~-~~l~~~~evv~lp~~~~~~  374 (379)
                      +++.+++||++++|+||+.. ..+..+++++++|++.+.|
T Consensus        79 ~~i~~~~~d~~v~G~D~~~~~~~~~~~~~~i~~~~~~~iS  118 (126)
T d1coza_          79 QDIIDHNIDVFVMGDDWEGKFDFLKDQCEVVYLPRTEGIS  118 (126)
T ss_dssp             HHHHHTTCSEEEEEGGGTTTTGGGTTTSEEEEECCCTTCC
T ss_pred             hhhhccCCCEeeeccccccchHHHHcCCEEEEECCCCCcc
Confidence            99999999999999999876 4577889999999988754

>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: FMN adenylyltransferase domain of bifunctional FAD synthetase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=1.8e-21  Score=170.23  Aligned_cols=132  Identities=23%  Similarity=0.300  Sum_probs=103.6

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcC-----CeEEEEEccchhhhccCC-CCCCCHHHHHHHHhcCccccEEEeCCCc--c
Q 016998           68 VYMDGCFDLMHYGHANALRQAKALG-----DELVVGVVSDEEIIANKG-PPVLSMEERLALVSGLKWVDEVIANAPY--A  139 (379)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~-----d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~~~~VD~Vv~~~p~--~  139 (379)
                      |+++|+|||+|+||+++|++|++.+     ..+++.+.+++.....+. +++++.++|.++++.+ +++.++. +..  .
T Consensus         1 VvtiG~FDGvH~GHq~li~~~~~~a~~~~~~~~v~tf~~~p~~~~~~~~~~l~~~~~k~~~l~~~-g~~~~l~-f~~~~~   78 (157)
T d1mrza2           1 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVEMLSRY-ARTVVLD-FFRIKD   78 (157)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTTCCCBSSCHHHHHHHHTTT-SCEEEEC-HHHHTT
T ss_pred             CEEEEcccchhHHHHHHHHHHHHHHHHcCCCceEeecCCCchheEeccccccccHHHhhhhhhcc-cceeeeh-hhhHhh
Confidence            6899999999999999999998875     347777777776543333 5799999999999998 5776654 211  1


Q ss_pred             cc-HHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCC-eEEEecc----CCCCCHHHHHHHHHhc
Q 016998          140 IT-EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKR----TEGVSSTDIVGRILSS  203 (379)
Q Consensus       140 ~t-~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-~~~~v~r----~~~VSST~Ir~rI~~~  203 (379)
                      ++ ++|+++++.  +++.||+|+||+||.++.|+.+.+++.| ++..++.    .+.||||.||+.|.++
T Consensus        79 ls~~~Fi~~~l~--~~~~ivvG~Df~FG~~r~G~~~~Lk~~g~~v~~i~~~~~~~~~ISST~IR~~l~~G  146 (157)
T d1mrza2          79 LTPEGFVERYLS--GVSAVVVGRDFRFGKNASGNASFLRKKGVEVYEIEDVVVQGKRVSSSLIRNLVQEG  146 (157)
T ss_dssp             CCHHHHHHHHCT--TCCEEEEETTCCBSGGGCBCHHHHHHTTCEEEEECCCEETTEECCHHHHHHHHHTT
T ss_pred             hhhhHHHHHHhh--cCcEEEEecCcccccccccchhhhccceeEEEeeccEeeCCcEEcHHHHHHHHHcC
Confidence            12 489988663  7899999999999999999999999887 4444443    3469999999999865

>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.44  E-value=9.1e-13  Score=112.33  Aligned_cols=129  Identities=17%  Similarity=0.206  Sum_probs=78.5

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC-cc---ccEEEeCCCccc
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KW---VDEVIANAPYAI  140 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~---VD~Vv~~~p~~~  140 (379)
                      |+ +++.|+||++|.||+.++++|++.+|+++|.+.++..  ..+..+.++.+||.+|++.. ..   .........+..
T Consensus         1 mk-gl~~G~FdP~H~GH~~li~~a~~~~d~v~v~i~~~~~--~~~~~~~~s~~~R~~~i~~~~~~~~~~~~~~~~~~~~~   77 (164)
T d1f9aa_           1 LR-GFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQK--SHTLENPFTAGERILMITQSLKDYDLTYYPIPIKDIEF   77 (164)
T ss_dssp             CE-EEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTC--CSSSSCCSCHHHHHHHHHHHHTTSSCEEEEEECCCCSC
T ss_pred             CE-EEEecccCCCCHHHHHHHHHHHHhCCCeEEEecCCcc--ccCcCCCCCHHHHHHHHHHHhhhcCcceeeccccccch
Confidence            45 8999999999999999999999999999998876542  12225678999999999852 11   112222222333


Q ss_pred             cHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCC-eEEEecc--CCCCCHHHHHHHHHhc
Q 016998          141 TEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKR--TEGVSSTDIVGRILSS  203 (379)
Q Consensus       141 t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-~~~~v~r--~~~VSST~Ir~rI~~~  203 (379)
                      ...+... +..+.+++.+...+      ........++.+ ++..++.  ..+||||+||++|..+
T Consensus        78 ~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~ISST~IR~~i~~g  136 (164)
T d1f9aa_          78 NSIWVSY-VESLTPPFDIVYSG------NPLVRVLFEERGYEVKRPEMFNRKEYSGTEIRRRMLNG  136 (164)
T ss_dssp             GGGHHHH-HHHHSCCCSEEECC------CHHHHHHHHHTTCEEECCCCCSTTTSSHHHHHHHHHHT
T ss_pred             HHHHHHH-HHhhcCceEEEEcC------hHHHHHHHHhcCCeEEEecCcCCCCcCHHHHHHHHHcC
Confidence            3333222 22223332222111      122333445555 3333332  3579999999999865

>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Transcriptional regulator NadR, NMN-adenylyltransferase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.37  E-value=3.7e-13  Score=113.43  Aligned_cols=63  Identities=27%  Similarity=0.209  Sum_probs=52.9

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhh----c-cCCCCCCCHHHHHHHHhcCc
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII----A-NKGPPVLSMEERLALVSGLK  127 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~----~-~K~~pi~t~eER~~~l~~~~  127 (379)
                      ++++++.|+||++|.||+.++++|++.+|+++|++.+++...    . ....++.+.++|.++++.+.
T Consensus         2 kkigl~~G~FdP~H~GH~~l~~~a~~~~d~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~   69 (163)
T d1lw7a1           2 KKVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIF   69 (163)
T ss_dssp             CCEEEEEECCSSCCHHHHHHHHHHHTTCSEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHT
T ss_pred             CeEEEEeeeCCCCCHHHHHHHHHHHHhCCccEEEEECCCCccccccccccccCCCCHHHHHHHHHHhC
Confidence            457899999999999999999999999999999999887531    1 22367899999999997653

>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.33  E-value=8.3e-12  Score=106.85  Aligned_cols=126  Identities=15%  Similarity=0.164  Sum_probs=76.7

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC------ccccEEEeCCC-ccc
Q 016998           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL------KWVDEVIANAP-YAI  140 (379)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~------~~VD~Vv~~~p-~~~  140 (379)
                      +++.|+||++|.||+.++++|.+.+|.++|.+.+....  .+.+..++.+||++|++..      ..+.......+ ...
T Consensus         3 gi~~G~FdP~H~GH~~ii~~a~~~~d~v~v~i~~~~~~--~~~~~~~~~~~R~~mi~~~~~~~~~~~~~~~~~~~~~~~~   80 (167)
T d1ej2a_           3 GLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLS--HSIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQDIEC   80 (167)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTCC--SSSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEECCCCSC
T ss_pred             EEEeeccCCCCHHHHHHHHHHHHHCCceEEEEecCCCC--CCccccccHHHHHHHHHHHHHHcCCCceeEEeccchhhhh
Confidence            89999999999999999999999999999998775421  2235778999999999841      12222222222 222


Q ss_pred             cHHHHHHHhh-ccCccEEEEcCCCCCCCCCchHHHHHHhCC-eEEEecc--CCCCCHHHHHHHHHhc
Q 016998          141 TEQFMNRLFN-EHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKR--TEGVSSTDIVGRILSS  203 (379)
Q Consensus       141 t~efl~~ll~-~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-~~~~v~r--~~~VSST~Ir~rI~~~  203 (379)
                      ...+...... ..+.+.++-+       + .......+..| .+..++.  ...||||+||++|..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~v~~~~~~~~~~ISST~IR~~i~~g  139 (167)
T d1ej2a_          81 NALWVGHIKMLTPPFDRVYSG-------N-PLVQRLFSEDGYEVTAPPLFYRDRYSGTEVRRRMLDD  139 (167)
T ss_dssp             HHHHHHHHHHHSCCCSEEECC-------C-HHHHHHHHHTTCCEECCCCSSTTTSSHHHHHHHHHHT
T ss_pred             HHHHHHHHheeeeceeEEEcc-------h-HHHHHHHHcCCCeEEeccccccccccHHHHHHHHHcC
Confidence            2222221111 1234443321       1 12233444555 3333332  3479999999999865

>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=7.1e-12  Score=105.38  Aligned_cols=39  Identities=28%  Similarity=0.434  Sum_probs=35.7

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccch
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDE  103 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~  103 (379)
                      |+++++.|+||++|.||++++++|.+.+|.++|.+.+.+
T Consensus         1 m~~Av~~GsFdPiH~GHl~i~~~a~~~~d~~~v~~~~~~   39 (157)
T d1tfua_           1 MTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNP   39 (157)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECCS
T ss_pred             CCEeEeCcCCCCCCHHHHHHHHHHHHhcChHHhhccccC
Confidence            578999999999999999999999999999888887654

>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=7.7e-12  Score=104.83  Aligned_cols=54  Identities=26%  Similarity=0.525  Sum_probs=43.0

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHh
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVS  124 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~  124 (379)
                      |+++.+|+||++|.||+.++++|.+.+|+++|.+.+.+     ..++..+.++|..++.
T Consensus         1 k~AifgGsFdP~H~GHl~li~~a~~~~D~v~v~~~~~~-----~~k~~~~~~~~~~~~~   54 (157)
T d1qjca_           1 KRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASP-----SKKPMFTLEERVALAQ   54 (157)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEESCC-----SSCCSSCHHHHHHHHH
T ss_pred             CEEEEeeccCCCCHHHHHHHHHHHHhCCEeeecccCcc-----ccccccCHHHHHHHHH
Confidence            47899999999999999999999999999999888654     1234455566666554

>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.11  E-value=6.2e-11  Score=99.61  Aligned_cols=54  Identities=31%  Similarity=0.567  Sum_probs=40.0

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHh
Q 016998           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVS  124 (379)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~  124 (379)
                      +++.|+||++|.||++++++|.+.+|+|++++..++.   .|.....+..+|+.+..
T Consensus         3 ~ifgGsFdP~H~GHl~ii~~a~~~~D~v~i~~~~~~~---kk~~~~~~~~~~~~~~~   56 (160)
T d1od6a_           3 VVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENPS---KRGQYLFSAEERLAIIR   56 (160)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECC--------CCSSCHHHHHHHHH
T ss_pred             EEeeeccCCcCHHHHHHHHHHHHhCCEEEEeccCCCC---ccccccCCHHHHHHHHH
Confidence            5899999999999999999999999999998887653   12234445555555443

>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=7.2e-11  Score=110.15  Aligned_cols=83  Identities=16%  Similarity=0.110  Sum_probs=53.1

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcC--------CeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-CccccEEEe-
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALG--------DELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIA-  134 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~--------d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~Vv~-  134 (379)
                      +..++++|+||++|.||+.+++.|++..        +.+++..+.++    .+.+.+.+.++|++|++- ++..+.+.. 
T Consensus         4 ~~v~l~~GSFdP~H~GHl~ia~~a~~~l~~~~~~~~~~~~~~P~~~~----~~k~~~~s~~~Rl~Ml~la~~~~~~~~vs   79 (271)
T d1kr2a_           4 EVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDA----YKKKGLIPAYHRVIMAELATKNSKWVEVD   79 (271)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGG----GCCTTCCCHHHHHHHHHHHTTTCSSEEEC
T ss_pred             cEEEEEccccCcchHHHHHHHHHHHHHHhhccccceeEEEEecCCCC----CcCCCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence            3455889999999999999999988642        33455444433    233578899999999974 333443433 


Q ss_pred             -----CCCccccHHHHHHHhhc
Q 016998          135 -----NAPYAITEQFMNRLFNE  151 (379)
Q Consensus       135 -----~~p~~~t~efl~~ll~~  151 (379)
                           ...+.+|-+.++.+-++
T Consensus        80 ~~E~~~~~~syTidTl~~l~~~  101 (271)
T d1kr2a_          80 TWESLQKEWKETLKVLRHHQEK  101 (271)
T ss_dssp             CHHHHCSSCCCHHHHHHHHHHH
T ss_pred             ehhhhcCCCccHHHHHHHHHHH
Confidence                 12234455555554443

>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.08  E-value=3.3e-11  Score=102.17  Aligned_cols=55  Identities=25%  Similarity=0.484  Sum_probs=47.6

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG  125 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~  125 (379)
                      .+++++|+||++|.||++++++|.+.+|+++|.+...+     +.++..+.++|.+++..
T Consensus         2 ~IaifgGsFdPiH~GHl~i~~~a~~~~D~v~v~~~~~~-----~~~~~~~~~~r~~~~~~   56 (163)
T d1o6ba_           2 SIAVCPGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNS-----SKKPLFSVEERCELLRE   56 (163)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCC-----SSCCSSCHHHHHHHHHH
T ss_pred             eEEEeccccCCCCHHHHHHHHHHHHhCCEEEEcccccc-----cccccCCHHHHHHHHhh
Confidence            47899999999999999999999999999998776543     33688999999999875

>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.05  E-value=8.9e-10  Score=93.64  Aligned_cols=139  Identities=15%  Similarity=0.011  Sum_probs=73.2

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC-ccccEEEeC------CC
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVDEVIAN------AP  137 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~VD~Vv~~------~p  137 (379)
                      +++++..|+||++|.||+.++++|.+.++...|.+.+...-...+..+.....+|..+.... .....+...      ..
T Consensus         2 kkIalfgGSFdP~H~GH~~ii~~a~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~   81 (189)
T d1kama_           2 KKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQNEDYTDSFHRVEMLKLAIQSNPSFKLELVEMEREG   81 (189)
T ss_dssp             CEEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC---------CHHHHHHHHHHHHTTCTTEEECCGGGSTTC
T ss_pred             CEEEEeccCcCCCCHHHHHHHHHHHHHcCCCEEEEEeccCCcccccchhhHHHHHHHHHHhhhccCcceeechhhhccCC
Confidence            45679999999999999999999999986433333332211111113455556666555431 111111110      11


Q ss_pred             ccccHHHHHHHhhcc--CccEEEEcCCCCCCCCCchHHHHHHhCCeEEEecc-----------------CCCCCHHHHHH
Q 016998          138 YAITEQFMNRLFNEH--KIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKR-----------------TEGVSSTDIVG  198 (379)
Q Consensus       138 ~~~t~efl~~ll~~~--~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r-----------------~~~VSST~Ir~  198 (379)
                      ..++.+.+..+....  .....+.|.|..........++...........++                 ...||||.||+
T Consensus        82 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~  161 (189)
T d1kama_          82 PSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKLDELLNLIQFIGVKRPGFHVETPYPLLFADVPEFEVSSTMIRE  161 (189)
T ss_dssp             CCSHHHHHHHHHHHSTTSEEEEEEETTTTTTCCCCHHHHHHHHHSEEEEEECSSCCCCCSSCCEEEECCCBCCCHHHHHH
T ss_pred             cceehhhhhHHhhcCCcchhhhhhhcccccccccchhhhhhhhhcceeeccccccccccchhhhccccccCcCChHHHHH
Confidence            122333333332222  34467788886655555554444433333222222                 12599999999


Q ss_pred             HHHhc
Q 016998          199 RILSS  203 (379)
Q Consensus       199 rI~~~  203 (379)
                      ++.++
T Consensus       162 ~i~~~  166 (189)
T d1kama_         162 RFKSK  166 (189)
T ss_dssp             HHHHT
T ss_pred             HHHcC
Confidence            99865

>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=2e-10  Score=99.67  Aligned_cols=58  Identities=19%  Similarity=0.332  Sum_probs=43.6

Q ss_pred             CCeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCCCCCCCHHHHHHHHh
Q 016998           64 KRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVS  124 (379)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~  124 (379)
                      ++.+++..|+||++|.||+.+++.|++..  |++++.+..++.   .|........+|.+++.
T Consensus         2 ~~~~AlfgGSFnP~h~GHl~~~~~a~~~~~~d~v~~~p~~~~~---~k~~~~~~~~~~~~~~~   61 (213)
T d1k4ma_           2 KSLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPP---HRPQPEANSVQRKHMLE   61 (213)
T ss_dssp             CCCEEEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCT---TSCCCSSCHHHHHHHHH
T ss_pred             CccEEEEecCcCcCcHHHHHHHHHHHHHcCCCEEEEEEeCCCc---hhcccccchHHHHHHHH
Confidence            45689999999999999999999999974  778888777653   23334445556665554

>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.98  E-value=4.6e-10  Score=93.96  Aligned_cols=54  Identities=30%  Similarity=0.453  Sum_probs=40.9

Q ss_pred             CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHh
Q 016998           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVS  124 (379)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~  124 (379)
                      |+ +++.|+||++|.||++++++|.+.+|++++++...+.     .+...+.+++.++.+
T Consensus         1 Mk-aifgGsFdPiH~GHl~i~~~a~~~~D~v~v~~~~~~~-----~~~~~~~~~~~~~~~   54 (157)
T d1vlha_           1 MK-AVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENPR-----KKCMFTLEERKKLIE   54 (157)
T ss_dssp             CE-EEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEECCTT-----CCCSSCHHHHHHHHH
T ss_pred             Ce-EEEeecCCCCcHHHHHHHHHHHHhcCccccccccccc-----ccccCCHHHHHHHHH
Confidence            45 8999999999999999999999999999998876542     123444455544443

>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain {Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]

Probab=98.97  E-value=2.8e-10  Score=102.76  Aligned_cols=104  Identities=17%  Similarity=0.095  Sum_probs=65.6

Q ss_pred             CCeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCC-CCCCCHHHHHHHHhc-Ccccc-----EE-E
Q 016998           64 KRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVD-----EV-I  133 (379)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~-~~~VD-----~V-v  133 (379)
                      +.++|+..|+||++|.||..+.+.|.+..  |++++.+...+   ..|+ .+..+.++|++|+.. +..-+     .. +
T Consensus        18 ~~~~v~~f~TfnP~H~GHl~ia~~a~~~~~ld~v~~iP~~~~---p~K~~~~~~~~~~r~~m~~~a~~~~~~~~is~~E~   94 (223)
T d1jhda2          18 GWSKVVAFQTRNPMHRAHEELCRMAMESLDADGVVVHMLLGK---LKKGDIPAPVRDAAIRTMAEVYFPPNTVMVTGYGF   94 (223)
T ss_dssp             TCSSEEEEEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEECC---CCTTCCCHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             CCCEEEEeeCCCCCCHHHHHHHHHHHHHhCcCceEEecccCC---CCcCCCccccHHHHHHHHHHhhcCCCceeeccccc
Confidence            34467778999999999999999999873  67777666544   2344 456678889888873 22222     11 1


Q ss_pred             eCCCccccHHHHHHHhhc-cCccEEEEcCCCCCCCCCc
Q 016998          134 ANAPYAITEQFMNRLFNE-HKIDYIIHGDDPCLLPDGT  170 (379)
Q Consensus       134 ~~~p~~~t~efl~~ll~~-~~~d~VV~GdD~~~g~~g~  170 (379)
                      ......++.+.++.+..+ .+..++++|.|-......+
T Consensus        95 ~~~~~syt~~tl~~l~~~~~~~~~~iiG~D~~~~~~~w  132 (223)
T d1jhda2          95 DMLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVGDYY  132 (223)
T ss_dssp             CCCCCTHHHHHHHHHHHHHTTCSEEEECTTTTCCTTCS
T ss_pred             cccCCCcHHHHHHHHHHhCCcceEEEEeecccccccCc
Confidence            111123455666655543 3567888887754433333

>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase {Human (Homo sapiens), FKSG76 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Cytosolic NMN/NAMN adenylyltransferase
species: Human (Homo sapiens), FKSG76 [TaxId: 9606]

Probab=98.97  E-value=4.6e-10  Score=101.65  Aligned_cols=137  Identities=14%  Similarity=0.066  Sum_probs=79.2

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcCC--e---EEEEEccchhhhccCCCCCCCHHHHHHHHhc-CccccEEEe-----
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALGD--E---LVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIA-----  134 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d--~---LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~Vv~-----  134 (379)
                      ..++++|+||++|.||+.++++|++..+  .   ++.++.+... ...+.++..+.++|++|++. +.....+..     
T Consensus         5 ~vl~~~GSFdP~H~GHl~i~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~R~~M~~la~~~~~~~~v~~~e~   83 (233)
T d1nuua_           5 VVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVN-DTYGKKDLAASHHRVAMARLALQTSDWIRVDPWES   83 (233)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHHHHSSEEEEEEEEEECC-TTCSSSCCCCHHHHHHHHHHHGGGCSSEEECCHHH
T ss_pred             EEEEEeeeeCccHHHHHHHHHHHHHHhCcccceeeeeEEEccCC-CCcccCccCCHHHHHHHHHHHHhccCCEEEehHHH
Confidence            3467899999999999999999988642  2   2222222110 11233688999999999974 222222332     


Q ss_pred             -CCCccccHHHHHHHhhccC--------------------cc---EEEEcCCCC----CCCCCc-hHHHHHHhCCeEEEe
Q 016998          135 -NAPYAITEQFMNRLFNEHK--------------------ID---YIIHGDDPC----LLPDGT-DAYALAKKVGRYKQI  185 (379)
Q Consensus       135 -~~p~~~t~efl~~ll~~~~--------------------~d---~VV~GdD~~----~g~~g~-~~y~~lk~~g~~~~v  185 (379)
                       ...+.+|.+.++.+.+++.                    ++   ++++|.|.-    ...... ..++.+-+...+.++
T Consensus        84 ~~~~~s~ti~tl~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fiiG~D~l~~~~~wk~~~~~~~~~il~~~~~iv~  163 (233)
T d1nuua_          84 EQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAAVPELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCV  163 (233)
T ss_dssp             HSSSCCCHHHHHHHHHHHHC--------------------CCCEEEEEEEHHHHHHTTSTTTSCHHHHHHHHHHTCEEEE
T ss_pred             hCCCCccHHHHHHHHHHHhcccccccccccccchhccccCCCccEEEEEccchhhhcchhhhhcchhHHHHHhhCcEEEE
Confidence             2223445555555444431                    22   578999831    111111 123444444455555


Q ss_pred             ccC-----------------------------CCCCHHHHHHHHHhc
Q 016998          186 KRT-----------------------------EGVSSTDIVGRILSS  203 (379)
Q Consensus       186 ~r~-----------------------------~~VSST~Ir~rI~~~  203 (379)
                      +|.                             ..||||+||+++..+
T Consensus       164 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g  210 (233)
T d1nuua_         164 GRVSHDPKGYIAESPILRMHQHNIHLAKEPVQNEISATYIRRALGQG  210 (233)
T ss_dssp             CCTTCCHHHHHHHCHHHHHTGGGEEEECCSCCCCCCHHHHHHHHHTT
T ss_pred             eCCCCchhhhhhhHHHHhhccCCEEEecCCccccCCHHHHHHHHHcC
Confidence            552                             248999999999865

>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Transcriptional regulator NadR, NMN-adenylyltransferase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.94  E-value=5e-10  Score=93.69  Aligned_cols=67  Identities=19%  Similarity=0.167  Sum_probs=55.3

Q ss_pred             CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhc----cCCCCCCCCCHHHHHHHHHHccCc
Q 016998          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSE----HRGSYHPIMHLHERSLSVLACRYV  322 (379)
Q Consensus       255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~----~Kg~~~pi~~~~eR~~~v~~~~~V  322 (379)
                      +++++++.|+||++|.||+.++++|++.+|.|+|++.++.....    .+.. .++.++++|..+++.+...
T Consensus         1 ~kkigl~~G~FdP~H~GH~~l~~~a~~~~d~v~v~i~~~~~~~~~~~~~~~~-~~~~~~~~R~~~l~~~~~~   71 (163)
T d1lw7a1           1 EKKVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKM-KRMPTVQDRLRWMQQIFKY   71 (163)
T ss_dssp             CCCEEEEEECCSSCCHHHHHHHHHHHTTCSEEEEEEEECHHHHHHHHHHTTC-SSCCCHHHHHHHHHHHTST
T ss_pred             CCeEEEEeeeCCCCCHHHHHHHHHHHHhCCccEEEEECCCCccccccccccc-cCCCCHHHHHHHHHHhCcc
Confidence            36899999999999999999999999999999999999864321    1222 5788999999999777443

>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.87  E-value=3.4e-09  Score=89.59  Aligned_cols=87  Identities=21%  Similarity=0.211  Sum_probs=63.0

Q ss_pred             EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cCcCceEe------CCCC
Q 016998          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVII------GAPW  331 (379)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~Vii------~~~~  331 (379)
                      +++.|+||++|.||+.++++|++.+|.++|++.++...   +.+ .+.++.+||.++++.. ...+....      ....
T Consensus         3 gl~~G~FdP~H~GH~~li~~a~~~~d~v~v~i~~~~~~---~~~-~~~~s~~~R~~~i~~~~~~~~~~~~~~~~~~~~~~   78 (164)
T d1f9aa_           3 GFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKS---HTL-ENPFTAGERILMITQSLKDYDLTYYPIPIKDIEFN   78 (164)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTCC---SSS-SCCSCHHHHHHHHHHHHTTSSCEEEEEECCCCSCG
T ss_pred             EEEecccCCCCHHHHHHHHHHHHhCCCeEEEecCCccc---cCc-CCCCCHHHHHHHHHHHhhhcCcceeeccccccchH
Confidence            78899999999999999999999999999999877432   222 4678999999888554 44433222      1234


Q ss_pred             CchHHHHHHcCCcEEEEc
Q 016998          332 EVTKDMITTFNICLVVHG  349 (379)
Q Consensus       332 ~~~~~~i~~~~~d~vv~G  349 (379)
                      ..+.++++.+.+++.+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~   96 (164)
T d1f9aa_          79 SIWVSYVESLTPPFDIVY   96 (164)
T ss_dssp             GGHHHHHHHHSCCCSEEE
T ss_pred             HHHHHHHHhhcCceEEEE
Confidence            566777888766654443

>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Thermus thermophilus [TaxId: 274]

Probab=98.76  E-value=1.6e-08  Score=84.36  Aligned_cols=108  Identities=18%  Similarity=0.254  Sum_probs=67.0

Q ss_pred             EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHH-HHHHccCcCceEeCCCCCchHHH
Q 016998          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSL-SVLACRYVDEVIIGAPWEVTKDM  337 (379)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~-~v~~~~~Vd~Vii~~~~~~~~~~  337 (379)
                      |+.+|+|||+|.||++++++|.+.+|.|++++..+..    |.. ....+..+|.. ....+..-...............
T Consensus         3 ~ifgGsFdP~H~GHl~ii~~a~~~~D~v~i~~~~~~~----kk~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (160)
T d1od6a_           3 VVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENPS----KRG-QYLFSAEERLAIIREATAHLANVEAATFSGLLVDF   77 (160)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECC----------CCSSCHHHHHHHHHHHTTTCTTEEEEEECSCHHHH
T ss_pred             EEeeeccCCcCHHHHHHHHHHHHhCCEEEEeccCCCC----ccc-cccCCHHHHHHHHHhhhhhcccccccccccccchh
Confidence            4789999999999999999999999999999998743    322 34455666554 34444444433333223444455


Q ss_pred             HHHcCCcEEEEcCCCCCC-----------CCCCCCceEEEEeeec
Q 016998          338 ITTFNICLVVHGTVSETN-----------TPLTVSLQFLYLPLIN  371 (379)
Q Consensus       338 i~~~~~d~vv~G~d~~~~-----------~~l~~~~evv~lp~~~  371 (379)
                      ...........+......           ..+..++++++++...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~l~~~~  122 (160)
T d1od6a_          78 VRRVGAQAIVKGLRAVSDYEYELQMAHLNRQLYPGLETLFILAAT  122 (160)
T ss_dssp             HHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTTCEEEEEECCG
T ss_pred             hhhhhhhheeeeecCchhhhhhhHHHHHHHHhhcCCcEeeccCCc
Confidence            555555555544322211           2456789999886543

>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=2.7e-08  Score=82.49  Aligned_cols=108  Identities=19%  Similarity=0.338  Sum_probs=75.9

Q ss_pred             eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHH-HHHHHccCcCceEeCCCCCchH
Q 016998          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERS-LSVLACRYVDEVIIGAPWEVTK  335 (379)
Q Consensus       257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~-~~v~~~~~Vd~Vii~~~~~~~~  335 (379)
                      |+++..|+|||+|.||+.++++|.+.+|.|+|.+.++.   . +   ++..+..+|. ...+......++.+.....+..
T Consensus         1 k~AifgGsFdP~H~GHl~li~~a~~~~D~v~v~~~~~~---~-~---k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (157)
T d1qjca_           1 KRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASP---S-K---KPMFTLEERVALAQQATAHLGNVEVVGFSDLMA   73 (157)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEESCC---S-S---CCSSCHHHHHHHHHHHTTTCTTEEEEEECSCHH
T ss_pred             CEEEEeeccCCCCHHHHHHHHHHHHhCCEeeecccCcc---c-c---ccccCHHHHHHHHHHHHHHhhcccccccccccc
Confidence            46788999999999999999999999999999998763   2 2   3455666666 4446667777777765556666


Q ss_pred             HHHHHcCCcEEEEcCCCCCC-----------CCCCCCceEEEEeeec
Q 016998          336 DMITTFNICLVVHGTVSETN-----------TPLTVSLQFLYLPLIN  371 (379)
Q Consensus       336 ~~i~~~~~d~vv~G~d~~~~-----------~~l~~~~evv~lp~~~  371 (379)
                      ........-...........           ..+...+++++++...
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~  120 (157)
T d1qjca_          74 NFARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPELESVFLMPSK  120 (157)
T ss_dssp             HHHHHTTCCEEEEECCTTCCHHHHHHHHHHHHHHCTTSEEEEECCCG
T ss_pred             chhhhhccceeeeeeccccchhhhhHHHHHHHHhCCCceEEEeecCC
Confidence            66666666555554322221           2466678888776543

>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.69  E-value=1e-08  Score=87.01  Aligned_cols=57  Identities=21%  Similarity=0.306  Sum_probs=47.6

Q ss_pred             EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc
Q 016998          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC  319 (379)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~  319 (379)
                      +++.|+|||+|.||+.++++|.+.+|.++|.|.++...   +.+ .+.++.+||..+++..
T Consensus         3 gi~~G~FdP~H~GH~~ii~~a~~~~d~v~v~i~~~~~~---~~~-~~~~~~~~R~~mi~~~   59 (167)
T d1ej2a_           3 GLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLS---HSI-RDPFTAGERVMMLTKA   59 (167)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTCC---SSS-SSCSCHHHHHHHHHHH
T ss_pred             EEEeeccCCCCHHHHHHHHHHHHHCCceEEEEecCCCC---CCc-cccccHHHHHHHHHHH
Confidence            78899999999999999999999999999999876432   222 4677999999888653

>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.62  E-value=7.8e-08  Score=80.71  Aligned_cols=106  Identities=15%  Similarity=0.299  Sum_probs=73.9

Q ss_pred             eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cCcCceEeCCCCCchH
Q 016998          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIGAPWEVTK  335 (379)
Q Consensus       257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~Vii~~~~~~~~  335 (379)
                      +|++..|+|||+|.||+.++++|.+.+|.++|.+..+.    .+   +|.++.++|..++... ................
T Consensus         2 ~IaifgGsFdPiH~GHl~i~~~a~~~~D~v~v~~~~~~----~~---~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~   74 (163)
T d1o6ba_           2 SIAVCPGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNS----SK---KPLFSVEERCELLREVTKDIPNITVETSQGLLI   74 (163)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCC----SS---CCSSCHHHHHHHHHHHHTTCTTEEEEECSSCHH
T ss_pred             eEEEeccccCCCCHHHHHHHHHHHHhCCEEEEcccccc----cc---cccCCHHHHHHHHhhhccccCcceecccccccc
Confidence            68999999999999999999999999999999887652    22   5899999999777544 5555544444445555


Q ss_pred             HHHHHcCCcEEEEc-CCCCCC----------CCCCCCceEEEEee
Q 016998          336 DMITTFNICLVVHG-TVSETN----------TPLTVSLQFLYLPL  369 (379)
Q Consensus       336 ~~i~~~~~d~vv~G-~d~~~~----------~~l~~~~evv~lp~  369 (379)
                      .............. ..+...          ..+...+++++++-
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (163)
T d1o6ba_          75 DYARRKNAKAILRGLRAVSDFEYEMQGTSVNRVLDESIETFFMMA  119 (163)
T ss_dssp             HHHHHTTCSEEEEEECSGGGHHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             ccceecCcceeeeeecCcchhhhHHHHHHHHHHhCcccceEeccc
Confidence            66666665554443 222211          23556777777653

>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.41  E-value=6.4e-07  Score=74.16  Aligned_cols=87  Identities=21%  Similarity=0.321  Sum_probs=55.2

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHH-HHccCcCceEeCCCCCch
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDEVIIGAPWEVT  334 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v-~~~~~Vd~Vii~~~~~~~  334 (379)
                      .++++++|+|||+|.||++++++|.+.+|.++|.+.....    +   .+..+.+++.... ..+...............
T Consensus         1 m~~Av~~GsFdPiH~GHl~i~~~a~~~~d~~~v~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (157)
T d1tfua_           1 MTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNPA----K---TGMFDLDERIAMVKESTTHLPNLRVQVGHGLV   73 (157)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECCSS----S---CCSSCHHHHHHHHHHHCTTCTTEEEEEECSCH
T ss_pred             CCEeEeCcCCCCCCHHHHHHHHHHHHhcChHHhhccccCc----c---cccccHHHHhhHHHHHhhcccccccccccccc
Confidence            3789999999999999999999999999999999986642    2   2344444544333 333222222222223444


Q ss_pred             HHHHHHcCCcEEEEc
Q 016998          335 KDMITTFNICLVVHG  349 (379)
Q Consensus       335 ~~~i~~~~~d~vv~G  349 (379)
                      .......+......+
T Consensus        74 ~~~~~~~~~~~~~~~   88 (157)
T d1tfua_          74 VDFVRSCGMTAIVKG   88 (157)
T ss_dssp             HHHHHHTTCCEEEEE
T ss_pred             cccccccCCceEeee
Confidence            555555555555444

>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.36  E-value=1e-06  Score=72.94  Aligned_cols=103  Identities=23%  Similarity=0.309  Sum_probs=61.6

Q ss_pred             EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcC--ceEeCCCCCchH
Q 016998          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVD--EVIIGAPWEVTK  335 (379)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd--~Vii~~~~~~~~  335 (379)
                      ++..|+|||+|.||+.++++|.+.+|.++|++.....    .   ....+..++..... .+....  ......  ....
T Consensus         3 aifgGsFdPiH~GHl~i~~~a~~~~D~v~v~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~   73 (157)
T d1vlha_           3 AVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENPR----K---KCMFTLEERKKLIEEVLSDLDGVKVDVHH--GLLV   73 (157)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEECCTT----C---CCSSCHHHHHHHHHHHTTTCTTEEEEEEC--SCHH
T ss_pred             EEEeecCCCCcHHHHHHHHHHHHhcCccccccccccc----c---cccCCHHHHHHHHHHHhhhhccccchhcc--cccc
Confidence            7899999999999999999999999999999986632    1   24445555554333 333222  222222  2223


Q ss_pred             HHHHHcCCcEEEEc-CCCCCC----------CCCCCCceEEEEeee
Q 016998          336 DMITTFNICLVVHG-TVSETN----------TPLTVSLQFLYLPLI  370 (379)
Q Consensus       336 ~~i~~~~~d~vv~G-~d~~~~----------~~l~~~~evv~lp~~  370 (379)
                      .............. ..+...          ..+..++|+++++-.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~i~l~~~  119 (157)
T d1vlha_          74 DYLKKHGIKVLVRGLRAVTDYEYELQMALANKKLYSDLETVFLIAS  119 (157)
T ss_dssp             HHHHHHTCCEEEEEECTTSCHHHHHHHHHHHHHHSTTCEEEEEECC
T ss_pred             ccccccceeEEEeeccccchhhhhhhHHHHHHHhcCCCcEEeccCC
Confidence            33333333443333 333222          245668888877543

>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.14  E-value=1e-06  Score=74.01  Aligned_cols=67  Identities=12%  Similarity=0.084  Sum_probs=40.4

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCC--EEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cCcCceE
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVI  326 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd--~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~Vi  326 (379)
                      +||++.+|+|||+|.||+.++++|.+.+|  .+++......   ..+.. .+.....+|....... +....+.
T Consensus         2 kkIalfgGSFdP~H~GH~~ii~~a~~~~~~~~V~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   71 (189)
T d1kama_           2 KKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIP---PHKQN-EDYTDSFHRVEMLKLAIQSNPSFK   71 (189)
T ss_dssp             CEEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC-------------CHHHHHHHHHHHHTTCTTEE
T ss_pred             CEEEEeccCcCCCCHHHHHHHHHHHHHcCCCEEEEEeccCC---ccccc-chhhHHHHHHHHHHhhhccCccee
Confidence            68889999999999999999999999985  4444443322   11221 3455566666544333 4433333

>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: FMN adenylyltransferase domain of bifunctional FAD synthetase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.05  E-value=3.4e-06  Score=72.00  Aligned_cols=108  Identities=16%  Similarity=0.113  Sum_probs=72.6

Q ss_pred             EEEcCccccCChHHHHHHHHHHhcC-----CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCC--C
Q 016998          259 VYIDGAFDLFHAGHVEILKKARQLG-----DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAP--W  331 (379)
Q Consensus       259 v~~~G~FDl~H~GHi~~L~~A~~~g-----d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~--~  331 (379)
                      |++-|.||-+|.||..+|++|++.+     .-+++....+...-..+ ...++++.++|...++.+. +|.++....  .
T Consensus         1 VvtiG~FDGvH~GHq~li~~~~~~a~~~~~~~~v~tf~~~p~~~~~~-~~~~l~~~~~k~~~l~~~g-~~~~l~f~~~~~   78 (157)
T d1mrza2           1 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPD-FPGLLMTVESRVEMLSRYA-RTVVLDFFRIKD   78 (157)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTT-CCCBSSCHHHHHHHHTTTS-CEEEECHHHHTT
T ss_pred             CEEEEcccchhHHHHHHHHHHHHHHHHcCCCceEeecCCCchheEec-cccccccHHHhhhhhhccc-ceeeehhhhHhh
Confidence            4566999999999999999887642     34666665554433322 2357999999999998885 555443210  1


Q ss_pred             CchHHHHHHc--CCcEEEEcCCCCCC-------C-CCCCCceEEEEe
Q 016998          332 EVTKDMITTF--NICLVVHGTVSETN-------T-PLTVSLQFLYLP  368 (379)
Q Consensus       332 ~~~~~~i~~~--~~d~vv~G~d~~~~-------~-~l~~~~evv~lp  368 (379)
                      -...+|++.+  ++..+|.|.|+-..       + +-+.+.+++.+|
T Consensus        79 ls~~~Fi~~~l~~~~~ivvG~Df~FG~~r~G~~~~Lk~~g~~v~~i~  125 (157)
T d1mrza2          79 LTPEGFVERYLSGVSAVVVGRDFRFGKNASGNASFLRKKGVEVYEIE  125 (157)
T ss_dssp             CCHHHHHHHHCTTCCEEEEETTCCBSGGGCBCHHHHHHTTCEEEEEC
T ss_pred             hhhhHHHHHHhhcCcEEEEecCcccccccccchhhhccceeEEEeec
Confidence            2457888877  78889999998643       1 223456666554

>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase {Human (Homo sapiens), FKSG76 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Cytosolic NMN/NAMN adenylyltransferase
species: Human (Homo sapiens), FKSG76 [TaxId: 9606]

Probab=97.96  E-value=5.2e-06  Score=74.20  Aligned_cols=69  Identities=20%  Similarity=0.259  Sum_probs=47.6

Q ss_pred             eEEEEcCccccCChHHHHHHHHHHhcC--C---EEEEEEecCcchhccCCCCCCCCCHHHHHHHH-HHccCcCceEeC
Q 016998          257 RVVYIDGAFDLFHAGHVEILKKARQLG--D---FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDEVIIG  328 (379)
Q Consensus       257 ~~v~~~G~FDl~H~GHi~~L~~A~~~g--d---~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v-~~~~~Vd~Vii~  328 (379)
                      .+.+++|+|||+|.||+.+++.|++..  |   .++.++.+...  ..|.. .+..+.++|+.++ ++++..+.+.+.
T Consensus         5 ~vl~~~GSFdP~H~GHl~i~~~a~~~~~~~~~~~~~~~~~~p~~--~~~~~-~~~~~~~~R~~M~~la~~~~~~~~v~   79 (233)
T d1nuua_           5 VVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVN--DTYGK-KDLAASHHRVAMARLALQTSDWIRVD   79 (233)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHHHHSSEEEEEEEEEECC--TTCSS-SCCCCHHHHHHHHHHHGGGCSSEEEC
T ss_pred             EEEEEeeeeCccHHHHHHHHHHHHHHhCcccceeeeeEEEccCC--CCccc-CccCCHHHHHHHHHHHHhccCCEEEe
Confidence            457789999999999999999998653  1   23333332211  11222 5889999999888 566777777774

>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=1.2e-05  Score=68.48  Aligned_cols=67  Identities=19%  Similarity=0.182  Sum_probs=46.1

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHH-HHHHHccCcCceEe
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERS-LSVLACRYVDEVII  327 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~-~~v~~~~~Vd~Vii  327 (379)
                      ..+++.+|+|||+|.||+.+++.|++..  |.|++..+.+.-   .|.  .......+|. .+..++...+.+..
T Consensus         3 ~~~AlfgGSFnP~h~GHl~~~~~a~~~~~~d~v~~~p~~~~~---~k~--~~~~~~~~~~~~~~~~~~~~~~~~~   72 (213)
T d1k4ma_           3 SLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPP---HRP--QPEANSVQRKHMLELAIADKPLFTL   72 (213)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCT---TSC--CCSSCHHHHHHHHHHHHTTCTTEEE
T ss_pred             ccEEEEecCcCcCcHHHHHHHHHHHHHcCCCEEEEEEeCCCc---hhc--ccccchHHHHHHHHHHhhcccceee
Confidence            4678899999999999999999999863  789998887743   232  2333444444 44455555555444

>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=2e-05  Score=72.37  Aligned_cols=66  Identities=17%  Similarity=0.219  Sum_probs=47.5

Q ss_pred             eEEEEcCccccCChHHHHHHHHHHhc----C----CEEEEEEecCcchhccCCCCCCCCCHHHHHHHH-HHccCcCceEe
Q 016998          257 RVVYIDGAFDLFHAGHVEILKKARQL----G----DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDEVII  327 (379)
Q Consensus       257 ~~v~~~G~FDl~H~GHi~~L~~A~~~----g----d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v-~~~~~Vd~Vii  327 (379)
                      .+++++|+|||.|.||+.+.+.|++.    +    |.+++--+.+.   ..|   .++.+.++|+.|+ ++++..+.+.+
T Consensus         5 ~v~l~~GSFdP~H~GHl~ia~~a~~~l~~~~~~~~~~~~~~P~~~~---~~k---~~~~s~~~Rl~Ml~la~~~~~~~~v   78 (271)
T d1kr2a_           5 VVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDA---YKK---KGLIPAYHRVIMAELATKNSKWVEV   78 (271)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGG---GCC---TTCCCHHHHHHHHHHHTTTCSSEEE
T ss_pred             EEEEEccccCcchHHHHHHHHHHHHHHhhccccceeEEEEecCCCC---CcC---CCCCCHHHHHHHHHHHHhcCCCEEE
Confidence            46678999999999999999988753    2    33333333332   122   4678999999888 66788888887


Q ss_pred             C
Q 016998          328 G  328 (379)
Q Consensus       328 ~  328 (379)
                      .
T Consensus        79 s   79 (271)
T d1kr2a_          79 D   79 (271)
T ss_dssp             C
T ss_pred             e
Confidence            5

>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain {Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]

Probab=97.20  E-value=0.00061  Score=59.97  Aligned_cols=91  Identities=13%  Similarity=0.124  Sum_probs=59.2

Q ss_pred             eEEEEcCccccCChHHHHHHHHHHhc--CCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeC-----
Q 016998          257 RVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIG-----  328 (379)
Q Consensus       257 ~~v~~~G~FDl~H~GHi~~L~~A~~~--gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~-----  328 (379)
                      +++. -|||||+|.||+.+.+.|.+.  .|.+++-.+...   ..|+. .+..+.+.|.+++. ++..-+.+.+.     
T Consensus        21 ~v~~-f~TfnP~H~GHl~ia~~a~~~~~ld~v~~iP~~~~---p~K~~-~~~~~~~~r~~m~~~a~~~~~~~~is~~E~~   95 (223)
T d1jhda2          21 KVVA-FQTRNPMHRAHEELCRMAMESLDADGVVVHMLLGK---LKKGD-IPAPVRDAAIRTMAEVYFPPNTVMVTGYGFD   95 (223)
T ss_dssp             SEEE-EEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEECC---CCTTC-CCHHHHHHHHHHHHHHHSCTTCEEEEEEECC
T ss_pred             EEEE-eeCCCCCCHHHHHHHHHHHHHhCcCceEEecccCC---CCcCC-CccccHHHHHHHHHHhhcCCCceeecccccc
Confidence            4444 499999999999999999975  478877776654   33432 45667778887665 56665555442     


Q ss_pred             CC-CCchHHHHHHc-----CCcEEEEcCCC
Q 016998          329 AP-WEVTKDMITTF-----NICLVVHGTVS  352 (379)
Q Consensus       329 ~~-~~~~~~~i~~~-----~~d~vv~G~d~  352 (379)
                      .+ .+.+.+.++.+     +..+++-|.|.
T Consensus        96 ~~~~syt~~tl~~l~~~~~~~~~~iiG~D~  125 (223)
T d1jhda2          96 MLYAGPREAVLHAYFRQNMGATHFIIGRDH  125 (223)
T ss_dssp             CCCCTHHHHHHHHHHHHHTTCSEEEECTTT
T ss_pred             ccCCCcHHHHHHHHHHhCCcceEEEEeecc
Confidence            11 23445554443     45677788763

>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Thermus thermophilus [TaxId: 274]

Probab=95.90  E-value=0.011  Score=54.03  Aligned_cols=66  Identities=21%  Similarity=0.161  Sum_probs=50.1

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhh-hccCC--CCCCCHHHHHHHHhcCccccEEEe
Q 016998           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI-IANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (379)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i-~~~K~--~pi~t~eER~~~l~~~~~VD~Vv~  134 (379)
                      +-...+-=.+|-||..|+++|++.+|.++|.+.-+|.= .....  ..--+.++=+++++.. +||.|+.
T Consensus        19 i~~VPTMGaLH~GHlsLi~~a~~~~~~vvvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~-~vd~vf~   87 (276)
T d1v8fa_          19 VGFVPTMGYLHRGHLALVERARRENPFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEA-GVDLLFA   87 (276)
T ss_dssp             EEEEEECSSCCHHHHHHHHHHHHHCSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHT-TCSEEEC
T ss_pred             EEEEcCCccHhHHHHHHHHHHHHhCCCEEEEEEecCccCCCcchhhccccchhhhHHHHHhC-CCCEEEe
Confidence            66666777899999999999999999999988776642 12222  2345677778888886 8999985

>d1v47a2 c.26.1.5 (A:136-349) ATP sulfurylase catalytic domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.84  E-value=0.069  Score=46.70  Aligned_cols=93  Identities=17%  Similarity=0.170  Sum_probs=60.5

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCc---c-ccEEEe-CCCcc--
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK---W-VDEVIA-NAPYA--  139 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~---~-VD~Vv~-~~p~~--  139 (379)
                      +|+..=+=+++|.||..+++.|.+.+|.|++-..-     ..+.+-=++.+-|++..+.+.   . -+.++. ..|..  
T Consensus        22 ~v~aFqTrnp~Hr~He~i~~~a~~~~~~lli~p~v-----G~~k~gd~~~~~r~~~y~~~~~~~~~~~~v~l~~~~~~m~   96 (214)
T d1v47a2          22 KVVAFQTRNAPHRAHEYLIRLGLELADGVLVHPIL-----GAKKPDDFPTEVIVEAYQALIRDFLPQERVAFFGLATPMR   96 (214)
T ss_dssp             SEEEEEESSCCCHHHHHHHHHHHHHSSEEEEEEBC-----SCCCTTSCCHHHHHHHHHHHHHHHSCGGGEEECCBCSCCC
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHhcCCEEEeeee-----ccCCccccCHHHHHHHHHHHHhhcCCCCeEEEEecCcccc
Confidence            46665566999999999999999999976654332     222244567788877766421   1 233443 12221  


Q ss_pred             c---cHHHHHHHh-hccCccEEEEcCCCC
Q 016998          140 I---TEQFMNRLF-NEHKIDYIIHGDDPC  164 (379)
Q Consensus       140 ~---t~efl~~ll-~~~~~d~VV~GdD~~  164 (379)
                      +   .|..+..++ +.++|+++++|.|..
T Consensus        97 yaGPrEA~lhAiirkN~GcthfiVGRDHA  125 (214)
T d1v47a2          97 YAGPKEAVFHALVRKNFGATHFLVGRDHA  125 (214)
T ss_dssp             CCTHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred             cccchHHHHHHHHHHhcCCCeEEEcCcCC
Confidence            1   245666655 459999999999975

>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.014  Score=53.53  Aligned_cols=67  Identities=24%  Similarity=0.215  Sum_probs=48.9

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhh-hccCC--CCCCCHHHHHHHHhcCccccEEEe
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI-IANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i-~~~K~--~pi~t~eER~~~l~~~~~VD~Vv~  134 (379)
                      ++-+..+-=.+|-||..|+++|++.+|.++|.+.-+|.= .....  ...-+.++=.++++.. +||.|+.
T Consensus        23 ~ig~VPTMGaLH~GHlsLi~~A~~~~~~vvvSIFVNP~QF~~~eD~~~YPr~l~~D~~~l~~~-~vd~vf~   92 (282)
T d1ihoa_          23 RVALVPTMGNLHDGHMKLVDEAKARADVVVVSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKR-KVDLVFA   92 (282)
T ss_dssp             CEEEEEECSCCCHHHHHHHHHHHHHCSEEEEEECCCGGGCSSHHHHHHSCCCHHHHHHHHHHT-TCSEEEC
T ss_pred             cEEEEcCCcchhHHHHHHHHHHHHhCCcEEEEEEecCccCcccchhhccCccHHHHHHHHHhc-CCcEEEe
Confidence            466666777899999999999999999999888755531 11111  1234678888888885 8998885

>d1x6va2 c.26.1.5 (A:390-624) ATP sulfurylase catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.27  Score=43.26  Aligned_cols=96  Identities=15%  Similarity=-0.004  Sum_probs=58.0

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcC--C---eEEEEEccchhhhccCCCCCCCHHHHHHHHh----cC-ccccEEEe-
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALG--D---ELVVGVVSDEEIIANKGPPVLSMEERLALVS----GL-KWVDEVIA-  134 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~--d---~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~----~~-~~VD~Vv~-  134 (379)
                      ++|++.=+=+++|.||..+++.|.+.+  +   .-.+.+++  .+ ..+.+-=++.+-|++..+    .- -.-+.++. 
T Consensus        24 ~~VvaFqTRNp~HraHe~i~~~a~~~~~~~~~~~~~lli~P--vv-G~~k~gD~~~~~~~~~y~~l~~~~~~~~~~~~l~  100 (235)
T d1x6va2          24 DAVSAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHP--LG-GWTKDDDVPLMWRMKQHAAVLEEGVLNPETTVVA  100 (235)
T ss_dssp             SEEEEEEESSCCCHHHHHHHHHHHHHHHHTTCSSEEEEEEE--BC-SCCCTTSCCHHHHHHHHHHHHHTTSSCGGGEEEC
T ss_pred             CeEEEeecCCCCcHHHHHHHHHHHHHHHhccccCCeEEEee--cc-ccCCCCccChHHHHHHHHHHHHhccCCCCcEEEE
Confidence            367777788999999999999987743  1   12233333  22 222244567777875433    21 12344443 


Q ss_pred             CCCcc-----ccHHHHHHHh-hccCccEEEEcCCCC
Q 016998          135 NAPYA-----ITEQFMNRLF-NEHKIDYIIHGDDPC  164 (379)
Q Consensus       135 ~~p~~-----~t~efl~~ll-~~~~~d~VV~GdD~~  164 (379)
                      ..|..     ..+..+..++ +.++|.++++|.|..
T Consensus       101 ~l~~~mryAGPrEAllhAiiRkN~GcThfiVGRDHA  136 (235)
T d1x6va2         101 IFPSPMMYAGPTEVQWHCRARMVAGANFYIVGRDPA  136 (235)
T ss_dssp             CBCCCCCCCHHHHHHHHHHHHHHTTCSEEEECSSTT
T ss_pred             eccccccccccHHHHHHHHHHHhcCCCeEEEcCccc
Confidence            22221     1246666666 459999999999985

>d1g8fa2 c.26.1.5 (A:169-389) ATP sulfurylase catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.39  E-value=0.1  Score=45.70  Aligned_cols=93  Identities=13%  Similarity=0.099  Sum_probs=59.3

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCc---cccEEEeCCCcccc
Q 016998           66 VRVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK---WVDEVIANAPYAIT  141 (379)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~---~VD~Vv~~~p~~~t  141 (379)
                      ++|+..=+=+++|.||..++++|.+.. +.|+|  ++  .+-. +.+-=++.+-|++..+.+.   .-+.++. .++...
T Consensus        21 ~~v~afqTrnp~Hr~He~i~~~a~~~~~~~lli--~p--~vg~-~k~gd~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~   94 (221)
T d1g8fa2          21 DRVVAFQTRNPMHRAHRELTVRAAREANAKVLI--HP--VVGL-TKPGDIDHHTRVRVYQEIIKRYPNGIAFL-SLLPLA   94 (221)
T ss_dssp             CCEEEEEESSCCCHHHHHHHHHHHHHHTCEEEE--EE--BCSB-CSTTCCCHHHHHHHHHHHGGGSCTTSEEE-CCBCCB
T ss_pred             CeEEEEecCCCCCHHHHHHHHHHHHhcCCCEEE--ee--cccC-CccccCCHHHHHHHHHHHHHhcCCCeEEE-Eecccc
Confidence            357778888999999999999987754 44444  32  1222 2233467788887766431   1223443 233222


Q ss_pred             -------HHHHHHHh-hccCccEEEEcCCCC
Q 016998          142 -------EQFMNRLF-NEHKIDYIIHGDDPC  164 (379)
Q Consensus       142 -------~efl~~ll-~~~~~d~VV~GdD~~  164 (379)
                             +..+..++ +.++|.++++|.|..
T Consensus        95 m~yaGPrEA~lhAiirkN~GcthfiVGRDHA  125 (221)
T d1g8fa2          95 MRMSGDREAVWHAIIRKNYGASHFIVGRDHA  125 (221)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTCSEEECCTTTT
T ss_pred             ccccchHHHHHHHHHHHhcCCCeeEeccccc
Confidence                   45666655 459999999999975

>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.51  E-value=0.035  Score=50.83  Aligned_cols=66  Identities=24%  Similarity=0.276  Sum_probs=43.3

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHH-cCCeEEEEEccchhh-hccCC---CCCCCHHHHHHHHhcCccccEEEe
Q 016998           67 RVYMDGCFDLMHYGHANALRQAKA-LGDELVVGVVSDEEI-IANKG---PPVLSMEERLALVSGLKWVDEVIA  134 (379)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~-~~d~LiVgV~sd~~i-~~~K~---~pi~t~eER~~~l~~~~~VD~Vv~  134 (379)
                      ++-..-+--.+|.||+.|+++|++ .++.++|.+.-+|.= .....   .| -+.++=.++++.. +||.++.
T Consensus        31 ~i~~VPTMGaLH~GHlsLi~~a~~~~~~~vvvSIFVNP~QF~~~eD~~~YP-r~~~~D~~~l~~~-~vd~vf~  101 (286)
T d2a84a1          31 RVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYP-RTPDDDLAQLRAE-GVEIAFT  101 (286)
T ss_dssp             CEEEEEECSSCCHHHHHHHHHHHTSTTCEEEEEECCCCCCTTC-----------CCSHHHHHHHT-TCCEEEC
T ss_pred             eEEEEeCCcchhHHHHHHHHHHhhcCCCEEEEEEeecccccCccccCccCC-cchhhhhHHHhcc-CCceeec
Confidence            466777888899999999999997 688888888655431 11111   22 2334446666664 8998874

>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Thermus thermophilus [TaxId: 274]

Probab=92.25  E-value=0.12  Score=46.71  Aligned_cols=62  Identities=18%  Similarity=0.345  Sum_probs=41.3

Q ss_pred             ccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCC--CCCCCCCHHHHHHHHHHccCcCceEe
Q 016998          264 AFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRG--SYHPIMHLHERSLSVLACRYVDEVII  327 (379)
Q Consensus       264 ~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg--~~~pi~~~~eR~~~v~~~~~Vd~Vii  327 (379)
                      |==-+|.||++++++|++.+|.+||.|.-++.=-..+.  ..||- ++++=...+++. .||.|+.
T Consensus        24 TMGaLH~GHlsLi~~a~~~~~~vvvSIFVNP~QF~~~eD~~~YPr-~~~~D~~~l~~~-~vd~vf~   87 (276)
T d1v8fa_          24 TMGYLHRGHLALVERARRENPFVVVSVFVNPLQFGPGEDYHRYPR-DLERDRALLQEA-GVDLLFA   87 (276)
T ss_dssp             ECSSCCHHHHHHHHHHHHHCSEEEEEECCCGGGCCTTSSTTTSCC-CHHHHHHHHHHT-TCSEEEC
T ss_pred             CCccHhHHHHHHHHHHHHhCCCEEEEEEecCccCCCcchhhcccc-chhhhHHHHHhC-CCCEEEe
Confidence            34458999999999999999999999986532111110  12565 556555555554 4776654

>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Escherichia coli [TaxId: 562]

Probab=91.57  E-value=0.058  Score=49.18  Aligned_cols=67  Identities=22%  Similarity=0.367  Sum_probs=42.2

Q ss_pred             CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhc----cCCCCCCCCCHHHHHHHHHHccCcCceEe
Q 016998          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSE----HRGSYHPIMHLHERSLSVLACRYVDEVII  327 (379)
Q Consensus       256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~----~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii  327 (379)
                      +++.+++ |==-+|.||++++++|++.+|.+||.|.-++.=-.    .+  +||- ++++=...+++. .||-|+.
T Consensus        22 ~~ig~VP-TMGaLH~GHlsLi~~A~~~~~~vvvSIFVNP~QF~~~eD~~--~YPr-~l~~D~~~l~~~-~vd~vf~   92 (282)
T d1ihoa_          22 KRVALVP-TMGNLHDGHMKLVDEAKARADVVVVSIFVNPMQFDRPEDLA--RYPR-TLQEDCEKLNKR-KVDLVFA   92 (282)
T ss_dssp             CCEEEEE-ECSCCCHHHHHHHHHHHHHCSEEEEEECCCGGGCSSHHHHH--HSCC-CHHHHHHHHHHT-TCSEEEC
T ss_pred             CcEEEEc-CCcchhHHHHHHHHHHHHhCCcEEEEEEecCccCcccchhh--ccCc-cHHHHHHHHHhc-CCcEEEe
Confidence            3444433 33458999999999999999999999974431000    01  1454 555555555553 4776654

>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.63  E-value=0.15  Score=46.41  Aligned_cols=38  Identities=24%  Similarity=0.636  Sum_probs=29.8

Q ss_pred             CCeEEEEcCccccCChHHHHHHHHHHh-cCCEEEEEEecC
Q 016998          255 NARVVYIDGAFDLFHAGHVEILKKARQ-LGDFLLVGIYTD  293 (379)
Q Consensus       255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~-~gd~liVgv~~D  293 (379)
                      ++++.+++ |=--+|.||+.++++|++ .+|.+||.|.-+
T Consensus        29 g~~i~~VP-TMGaLH~GHlsLi~~a~~~~~~~vvvSIFVN   67 (286)
T d2a84a1          29 GRRVMLVP-TMGALHEGHLALVRAAKRVPGSVVVVSIFVN   67 (286)
T ss_dssp             TCCEEEEE-ECSSCCHHHHHHHHHHHTSTTCEEEEEECCC
T ss_pred             CCeEEEEe-CCcchhHHHHHHHHHHhhcCCCEEEEEEeec
Confidence            34555443 556799999999999997 799999999644