Citrus Sinensis ID: 017008

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38

MARDGYVVPAAEPQAAAAATKKKTRSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLELREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS

ccccccccccccccHHHHccccccccEEEEEEEcccccEEEEEEEHHHHHHHHccccccccccccccccccEEEccccEEEEEccccEEEEEcccEEEEcccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc

ccccccEEEccccccccHHHHccccccEEEEEEcccccEEEEEccHHHHHHHHcccHHHHHHccccccccccEEEcccEEEEEHHHEEEEEcccEEEEEccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc

mardgyvvpaaepQAAAAATKKKTRSSRSWILLDaagnstvldvdkhAIMHRVQIHARdlrildpllsypstilGREQAIVLNLEHIKAIITSeevllrdpldehvIPVVAELQRrltpvnairdcqgdgkeyaggndvdageedespfEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRkmagtspvsgsgaanwfpasptigskisraSRASLATIRGDENDVEELEMLLELREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIfgmnipytwnenhgyMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS

mardgyvvpaaepqaaaaatkkktrssrSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLNLEHIKAIITSeevllrdplDEHVIPVVAelqrrltpvnairdcqgdgkEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAaypaldeltskissrnldrvrKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTIGSKISRASRASLatirgdendvEELEMLLELREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS

MARDGYVVPAAEPQaaaaatkkktrssrsWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFlaartteletaaYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRdeleqlldddddmadlylSRKMAGTSPVSGSGAANWFPASPTIGSKISRASRASLATIRGDENDVeelemllelreYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS

****************************SWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQG********************FEFRALEVALEAICSFLAARTTELETAAYPALDEL**********************************************************************************************VEELEMLLELREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGL***

******************************ILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVV*********************************EDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTS********NWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLELREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVG*

MARDGYVVPAA****************RSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLELREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS

*****YVVPAAEPQAAAAAT*KKTRSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVVAELQRRLT**************************DESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMA***********************ISRASRASLATIRGDENDVEELEMLLELREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGL***

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MARDGYVVPAAEPQAAAAATKKKTRSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRxxxxxxxxxxxxxxxxxxxxxxxxxxxxDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLELREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		379	2.2.26 [Sep-21-2011]
Q9FLG2		394	Magnesium transporter MRS	yes	no	0.992	0.954	0.768	1e-152
Q304A0		386	Magnesium transporter MRS	no	no	0.973	0.955	0.709	1e-152
Q10D38		384	Magnesium transporter MRS	yes	no	0.912	0.901	0.780	1e-151
B8AJT9		381	Magnesium transporter MRS	N/A	no	0.912	0.908	0.780	1e-151
P0CZ21		380	Magnesium transporter MRS	no	no	0.939	0.936	0.617	1e-126
Q9LXD4		387	Putative magnesium transp	no	no	0.928	0.909	0.602	1e-110
P0CZ22		294	Putative inactive magnesi	no	no	0.678	0.874	0.675	8e-92
Q9S9N4		442	Magnesium transporter MRS	no	no	0.936	0.803	0.466	1e-86
Q9SAH0		443	Magnesium transporter MRS	no	no	0.939	0.803	0.458	9e-86
Q67UQ7		436	Magnesium transporter MRS	no	no	0.881	0.766	0.468	2e-84

>sp\|Q9FLG2\|MRS22_ARATH Magnesium transporter MRS2-2 OS=Arabidopsis thaliana GN=MRS2-2 PE=2 SV=1	Back alignment and function desciption

 Score =  537 bits (1384), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 305/397 (76%), Positives = 324/397 (81%), Gaps = 21/397 (5%)

Query: 1   MARDGYVVPAAEPQAAAAATKKKTRSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDL 60
           MA++GY+VPA     +A  T KK     SW L+DA G S  LDVDK+ IMHRVQIHARDL
Sbjct: 1   MAQNGYLVPA---DPSAVVTVKKKTPQASWALIDATGQSEPLDVDKYEIMHRVQIHARDL 57

Query: 61  RILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVVAELQRRLTPV 120
           RILDP LSYPSTILGRE+AIVLNLEHIKAIITSEEVLLRDP DE+VIPVV EL+RRL   
Sbjct: 58  RILDPNLSYPSTILGRERAIVLNLEHIKAIITSEEVLLRDPSDENVIPVVEELRRRLPVG 117

Query: 121 NAIRDC-QGDGKEYAGG-NDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYP 178
           NA  +  QGDGKE AG  ND D G+EDESPFEFRALEVALEAICSFLAART ELETAAYP
Sbjct: 118 NASHNGGQGDGKEIAGAQNDGDTGDEDESPFEFRALEVALEAICSFLAARTAELETAAYP 177

Query: 179 ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGT 238
           ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRK++  
Sbjct: 178 ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLSSA 237

Query: 239 SPVSGS-GAANWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLE----------- 286
           S    S G  NW+  SPTIGSKISRASRASLAT+ GDENDVEELEMLLE           
Sbjct: 238 SSPISSIGEPNWYTTSPTIGSKISRASRASLATVHGDENDVEELEMLLEAYFMQIDSTLN 297

Query: 287 ----LREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWN 342
               LREYIDDTEDYINIQLDNHRNQLIQLEL LSSGTV LS+YSLVAGIFGMNIPYTWN
Sbjct: 298 RLTTLREYIDDTEDYINIQLDNHRNQLIQLELVLSSGTVCLSMYSLVAGIFGMNIPYTWN 357

Query: 343 ENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS 379
           + HGYMFK+VV  T   C V FV IMSYAR+KGLVGS
Sbjct: 358 DGHGYMFKYVVGLTGTLCVVVFVIIMSYARYKGLVGS 394

Low-affinity magnesium transporter that mediates the influx of magnesium. Plays a crucial role in male gametophyte development and male fertility.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q304A0\|MRS27_ARATH Magnesium transporter MRS2-7 OS=Arabidopsis thaliana GN=MRS2-7 PE=2 SV=1	Back alignment and function description

>sp\|Q10D38\|MRS2I_ORYSJ Magnesium transporter MRS2-I OS=Oryza sativa subsp. japonica GN=MRS2-I PE=2 SV=1	Back alignment and function description

>sp\|B8AJT9\|MRS2I_ORYSI Magnesium transporter MRS2-I OS=Oryza sativa subsp. indica GN=MRS2-I PE=3 SV=1	Back alignment and function description

>sp\|P0CZ21\|MRS28_ARATH Magnesium transporter MRS2-8 OS=Arabidopsis thaliana GN=MRS2-8 PE=2 SV=1	Back alignment and function description

>sp\|Q9LXD4\|MRS29_ARATH Putative magnesium transporter MRS2-9 OS=Arabidopsis thaliana GN=MRS2-9 PE=5 SV=2	Back alignment and function description

>sp\|P0CZ22\|MRS2I_ARATH Putative inactive magnesium transporter MRS2-8 OS=Arabidopsis thaliana GN=MRS2-8 PE=5 SV=1	Back alignment and function description

>sp\|Q9S9N4\|MRS21_ARATH Magnesium transporter MRS2-1 OS=Arabidopsis thaliana GN=MRS2-1 PE=2 SV=1	Back alignment and function description

>sp\|Q9SAH0\|MRS2A_ARATH Magnesium transporter MRS2-10 OS=Arabidopsis thaliana GN=MRS2-10 PE=2 SV=1	Back alignment and function description

>sp\|Q67UQ7\|MRS2B_ORYSJ Magnesium transporter MRS2-B OS=Oryza sativa subsp. japonica GN=MRS2-B PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		379
224099887		394	magnesium transporter [Populus trichocar	0.994	0.956	0.840	1e-173
224111064		398	magnesium transporter [Populus trichocar	0.994	0.947	0.807	1e-169
225432906		389	PREDICTED: magnesium transporter MRS2-I	0.984	0.958	0.822	1e-168
255551953		398	RNA splicing protein mrs2, mitochondrial	0.997	0.949	0.812	1e-167
356576539		395	PREDICTED: magnesium transporter MRS2-I-	0.994	0.954	0.811	1e-164
225432908		374	PREDICTED: magnesium transporter MRS2-I	0.984	0.997	0.855	1e-163
359807653		390	uncharacterized protein LOC100786817 [Gl	0.986	0.958	0.805	1e-163
357443063		390	Magnesium transporter [Medicago truncatu	0.986	0.958	0.789	1e-161
449465433		393	PREDICTED: magnesium transporter MRS2-2-	0.994	0.959	0.797	1e-159
297797473		395	hypothetical protein ARALYDRAFT_496668 [	0.997	0.956	0.772	1e-156

>gi\|224099887\|ref\|XP_002311660.1\| magnesium transporter [Populus trichocarpa] gi\|222851480\|gb\|EEE89027.1\| magnesium transporter [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 333/396 (84%), Positives = 349/396 (88%), Gaps = 19/396 (4%)

Query: 1   MARDGYVVPAAEPQAAAAATKKKTRSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDL 60
           MARDGYVVPA +P  A AA KKKT  +RSWIL+DA G  T+LD DKHAIM+RVQIHARDL
Sbjct: 1   MARDGYVVPA-DP-LAVAAVKKKTHPARSWILVDATGQGTILDADKHAIMNRVQIHARDL 58

Query: 61  RILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVVAELQRRLTPV 120
           RILDPLLSYPSTILGRE AIVLNLEHIKAIITSEEVLLRDPLDE+VIPVV ELQRRL P 
Sbjct: 59  RILDPLLSYPSTILGREGAIVLNLEHIKAIITSEEVLLRDPLDENVIPVVEELQRRLPPS 118

Query: 121 NAIRDCQGDGKEYAGGN-DVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPA 179
           +  R  QGDGKEY GG  DV+AGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPA
Sbjct: 119 SVFRQGQGDGKEYPGGQQDVEAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPA 178

Query: 180 LDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAG-T 238
           LDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRK+AG +
Sbjct: 179 LDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLAGAS 238

Query: 239 SPVSGSGAANWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLE------------ 286
           SPVS SG ANWFPASPTIGSKISRASRAS+ATIRGDENDVEELEMLLE            
Sbjct: 239 SPVSISGGANWFPASPTIGSKISRASRASVATIRGDENDVEELEMLLEAYFMQIDSSLNK 298

Query: 287 ---LREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNE 343
              LREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTV LSIYSLVAGIFGMNIPYTWN+
Sbjct: 299 LTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAGIFGMNIPYTWND 358

Query: 344 NHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS 379
           NHGYMFKWVVI T +FCA  F+ +M+YAR KGLVGS
Sbjct: 359 NHGYMFKWVVIVTGVFCASLFIVLMTYARHKGLVGS 394

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224111064\|ref\|XP_002315734.1\| magnesium transporter [Populus trichocarpa] gi\|222864774\|gb\|EEF01905.1\| magnesium transporter [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225432906\|ref\|XP_002284181.1\| PREDICTED: magnesium transporter MRS2-I isoform 1 [Vitis vinifera] gi\|297737159\|emb\|CBI26360.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255551953\|ref\|XP_002517021.1\| RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis] gi\|223543656\|gb\|EEF45184.1\| RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356576539\|ref\|XP_003556388.1\| PREDICTED: magnesium transporter MRS2-I-like [Glycine max]	Back alignment and taxonomy information

>gi\|225432908\|ref\|XP_002284188.1\| PREDICTED: magnesium transporter MRS2-I isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359807653\|ref\|NP_001240913.1\| uncharacterized protein LOC100786817 [Glycine max] gi\|255642149\|gb\|ACU21339.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|357443063\|ref\|XP_003591809.1\| Magnesium transporter [Medicago truncatula] gi\|355480857\|gb\|AES62060.1\| Magnesium transporter [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449465433\|ref\|XP_004150432.1\| PREDICTED: magnesium transporter MRS2-2-like [Cucumis sativus] gi\|449514585\|ref\|XP_004164422.1\| PREDICTED: magnesium transporter MRS2-2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297797473\|ref\|XP_002866621.1\| hypothetical protein ARALYDRAFT_496668 [Arabidopsis lyrata subsp. lyrata] gi\|297312456\|gb\|EFH42880.1\| hypothetical protein ARALYDRAFT_496668 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		379
TAIR\|locus:2174799		394	MGT9 "magnesium transporter 9"	0.725	0.697	0.665	8.9e-86
TAIR\|locus:2144746		294	AT5G09720 [Arabidopsis thalian	0.633	0.816	0.582	3.7e-64
TAIR\|locus:2025767		443	MGT1 "magnesium transporter 1"	0.485	0.415	0.510	9.9e-62
TAIR\|locus:2200542		442	MGT2 "magnesium transporter 2"	0.485	0.416	0.510	2.6e-61
TAIR\|locus:2077665		436	MGT6 "magnesium transporter 6"	0.730	0.635	0.362	1.4e-58
TAIR\|locus:2044254		421	MGT3 "magnesium transporter 3"	0.232	0.209	0.534	4.4e-46
TAIR\|locus:2091176		484	MGT4 "magnesium transporter 4"	0.232	0.181	0.613	3.2e-39
TAIR\|locus:2139905		408	MGT5 "AT4G28580" [Arabidopsis	0.881	0.818	0.324	2.1e-38
RGD\|708529		434	Mrs2 "MRS2 magnesium homeostas	0.160	0.140	0.428	5.3e-12
UNIPROTKB\|Q9ET09		434	Mrs2 "Magnesium transporter MR	0.160	0.140	0.428	5.3e-12

TAIR\|locus:2174799 MGT9 "magnesium transporter 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 187/281 (66%), Positives = 204/281 (72%)

Query:     1 MARDGYVVPAAEPQXXXXXXXXXXXXXXXWILLDAAGNSTVLDVDKHAIMHRVQIHARDL 60
             MA++GY+VPA +P                W L+DA G S  LDVDK+ IMHRVQIHARDL
Sbjct:     1 MAQNGYLVPA-DPSAVVTVKKKTPQAS--WALIDATGQSEPLDVDKYEIMHRVQIHARDL 57

Query:    61 RILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVVAELQRRLTPV 120
             RILDP LSYPSTILGRE+AIVLNLEHIKAIITSEEVLLRDP DE+VIPVV EL+RRL   
Sbjct:    58 RILDPNLSYPSTILGRERAIVLNLEHIKAIITSEEVLLRDPSDENVIPVVEELRRRLPVG 117

Query:   121 NAIRDC-QGDGKEYAGG-NDVDAGEEDESPFEFRALEVALEAICSFXXXXXXXXXXXXYP 178
             NA  +  QGDGKE AG  ND D G+EDESPFEFRALEVALEAICSF            YP
Sbjct:   118 NASHNGGQGDGKEIAGAQNDGDTGDEDESPFEFRALEVALEAICSFLAARTAELETAAYP 177

Query:   179 ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRXXXXXXXXXXXXXXXXXXSRKMAG- 237
             ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVR                  SRK++  
Sbjct:   178 ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLSSA 237

Query:   238 TSPVSGSGAANWFPASPTIGSKISRASRASLATIRGDENDV 278
             +SP+S  G  NW+  SPTIGSKISRASRASLAT+ GDENDV
Sbjct:   238 SSPISSIGEPNWYTTSPTIGSKISRASRASLATVHGDENDV 278

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0030001 "metal ion transport" evidence=IEA;ISS

GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IDA

TAIR\|locus:2144746 AT5G09720 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2025767 MGT1 "magnesium transporter 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2200542 MGT2 "magnesium transporter 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2077665 MGT6 "magnesium transporter 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2044254 MGT3 "magnesium transporter 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2091176 MGT4 "magnesium transporter 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2139905 MGT5 "AT4G28580" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

RGD\|708529 Mrs2 "MRS2 magnesium homeostasis factor homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9ET09 Mrs2 "Magnesium transporter MRS2 homolog, mitochondrial" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B8AJT9	MRS2I_ORYSI	No assigned EC number	0.7807	0.9129	0.9081	N/A	no
Q9FLG2	MRS22_ARATH	No assigned EC number	0.7682	0.9920	0.9543	yes	no
Q304A0	MRS27_ARATH	No assigned EC number	0.7095	0.9736	0.9559	no	no
Q10D38	MRS2I_ORYSJ	No assigned EC number	0.7807	0.9129	0.9010	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_VIII001440	magnesium transporter (394 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		379
cd12823		323	cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae	1e-119
cd12821		285	cd12821, EcCorA_ZntB-like, Escherichia coli CorA-S	7e-08
pfam01544		291	pfam01544, CorA, CorA-like Mg2+ transporter protei	6e-07
cd12827		289	cd12827, EcCorA_ZntB-like_u2, uncharacterized bact	1e-06
cd12829		305	cd12829, Alr1p-like, Saccharomyces cerevisiae Alr1	9e-05
COG0598		322	COG0598, CorA, Mg2+ and Co2+ transporters [Inorgan	0.002

>gnl\|CDD\|213357 cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family	Back alignment and domain information

 Score =  348 bits (896), Expect = e-119
 Identities = 160/366 (43%), Positives = 212/366 (57%), Gaps = 62/366 (16%)

Query: 30  WILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDP-LLSYPSTILGREQAIVLNLEHIK 88
           W ++D+ GN+TV+++DK  ++  + +  RDLR+LDP L SYP +IL RE AI++NLEHI+
Sbjct: 1   WTVIDSTGNATVVELDKSELLRELGLQPRDLRLLDPTLTSYPPSILVRENAILVNLEHIR 60

Query: 89  AIITSEEVLLRDPLDEH---VIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEED 145
           AIIT++EVLL DP       V   + ELQRRL   N              G++ ++G ED
Sbjct: 61  AIITADEVLLFDPDGSSSALVSAFLEELQRRLASSN--------------GSESESGGED 106

Query: 146 ESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRL 205
             PFEFRALE ALE +CS L A    LE  A P LDELT KIS+ NL+R+  LK  +  L
Sbjct: 107 SLPFEFRALEAALEEVCSHLEAELKRLEPEALPLLDELTDKISTSNLERLLPLKRRLVEL 166

Query: 206 TARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTIGSKISRASR 265
             RVQKVRD LE+LLDDD+DMAD+YL+ K                            A+ 
Sbjct: 167 ETRVQKVRDALEELLDDDEDMADMYLTDK----------------------------AAG 198

Query: 266 ASLATIRGDENDVEELEMLLE---------------LREYIDDTEDYINIQLDNHRNQLI 310
                    E+D EE+EMLLE               LREYIDDTE+ IN+ LD+ RNQL+
Sbjct: 199 PERLESSRKEDDHEEVEMLLEAYLQQVDELLNKLEELREYIDDTEELINLILDSRRNQLM 258

Query: 311 QLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSY 370
           +LEL LS GT+SL++ +LVAG+FGMN+P    E   Y F  V   + +   + F+ ++ Y
Sbjct: 259 RLELKLSIGTLSLAVGTLVAGLFGMNLPSGL-EESPYAFWIVTGGSVVGSILIFIVVLRY 317

Query: 371 ARFKGL 376
            R K L
Sbjct: 318 LRRKRL 323

A eukaryotic subfamily belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This functionally diverse subfamily includes the inner mitochondrial membrane Mg2+ transporters Saccharomyces cerevisiae Mfm1p/Lpe10p, Mrs2p, and human MRS2/ MRS2L. It also includes a family of Arabidopsis thaliana proteins (AtMGTs) some of which are localized to distinct tissues, and not all of which can transport Mg2+. Structures of the intracellular domain of two EcCorA_ZntB-like family transporters: Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, as in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 323

>gnl\|CDD\|213355 cd12821, EcCorA_ZntB-like, Escherichia coli CorA-Salmonella typhimurium ZntB_like family	Back alignment and domain information

>gnl\|CDD\|216560 pfam01544, CorA, CorA-like Mg2+ transporter protein	Back alignment and domain information

>gnl\|CDD\|213361 cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	Back alignment and domain information

>gnl\|CDD\|213363 cd12829, Alr1p-like, Saccharomyces cerevisiae Alr1p-like subfamily	Back alignment and domain information

>gnl\|CDD\|223671 COG0598, CorA, Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		379
KOG2662		414	consensus Magnesium transporters: CorA family [Ino	100.0
COG0598		322	CorA Mg2+ and Co2+ transporters [Inorganic ion tra	100.0
TIGR00383		318	corA magnesium Mg(2+) and cobalt Co(2+) transport	100.0
PRK09546		324	zntB zinc transporter; Reviewed	100.0
PRK11085		316	magnesium/nickel/cobalt transporter CorA; Provisio	99.97
PF01544		292	CorA: CorA-like Mg2+ transporter protein; InterPro	99.96
PRK09546		324	zntB zinc transporter; Reviewed	95.52
COG0598		322	CorA Mg2+ and Co2+ transporters [Inorganic ion tra	92.65
PF01544		292	CorA: CorA-like Mg2+ transporter protein; InterPro	92.54
TIGR00383		318	corA magnesium Mg(2+) and cobalt Co(2+) transport	89.92
PF10267		395	Tmemb_cc2: Predicted transmembrane and coiled-coil	89.38
PF03904		230	DUF334: Domain of unknown function (DUF334); Inter	86.24
PRK11085		316	magnesium/nickel/cobalt transporter CorA; Provisio	83.03
PF07332		121	DUF1469: Protein of unknown function (DUF1469); In	81.67

>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=4.1e-76  Score=562.15  Aligned_cols=341  Identities=65%  Similarity=0.935  Sum_probs=303.5

Q ss_pred             hhhccCCceeEEEEEcCCCCeeEEeechhhHHHhhCCCcchhhhhcCCCCCceeEeeeCCeEEEeccccceeeecCcEEe
Q 017008           19 ATKKKTRSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLL   98 (379)
Q Consensus        19 ~~~~~~~~~~~w~~id~~g~~~~~~~~k~~l~~~~~l~~RDlr~ld~~~~~~~~I~~R~~~Ilvnle~i~~II~~d~vl~   98 (379)
                      +.++++.++++|++||.+|++++.+++|+.|+++.||+|||||.+||.++||++|+.||+|||+|+|||||||++|+|++
T Consensus        56 ~~~~~~~~~~sw~~~D~tGn~~~~e~dK~~i~~r~~L~aRDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIItaeeVll  135 (414)
T KOG2662|consen   56 VSKKSGSGSRSWTRFDATGNSTVLEVDKYTIMKRVGLPARDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIITADEVLL  135 (414)
T ss_pred             cccccCCcceEEEEEcCCCCeeeccccHHHHHHHcCCChhhhhhccccccCccccccccceEEeehhhhheeeehhheeE
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCcchhHHHHHHHhhCcCCCcccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017008           99 RDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYP  178 (379)
Q Consensus        99 f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfe~~~LE~iL~~~~~~Le~~~~~le~~~~~  178 (379)
                      ||+.++ +.++.+++++|+...+.....+.+         +....++.+||||||||++|+.+|+.|+.++.+||..+++
T Consensus       136 ~d~~~~-v~~~~~el~~~l~~~~~~~~~q~s---------~~~~~~~~lPFEFrALE~aLe~~~s~L~~~~~~Le~~~~~  205 (414)
T KOG2662|consen  136 LDSLDP-VIPYNEELQRRLPVELESRGNQLS---------SDGGSKDELPFEFRALEVALEAACSFLDSRLSELETEAYP  205 (414)
T ss_pred             eccccc-cchHHHHHHHHhcccccccccccC---------CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999887 889999999999887653211111         1122368999999999999999999999999999999999


Q ss_pred             HHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhhcccc-cCCCCCCCCCCCCCCCCccc
Q 017008          179 ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAG-TSPVSGSGAANWFPASPTIG  257 (379)
Q Consensus       179 ~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~dm~~m~Lt~~~~~-~~~l~~~~~~~~~~~~~~~~  257 (379)
                      +||+|+.++++.+|++|+.+|++|.+|.++++++||+|+++|+||+||++||||+++.+ .+       +.|.+..++..
T Consensus       206 ~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~~-------~~~~~~sp~~~  278 (414)
T KOG2662|consen  206 LLDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQASS-------PESAPTSPTIK  278 (414)
T ss_pred             HHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhccc-------cccCCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999865 22       23344445444


Q ss_pred             cchhhcc--ccccccccCChhhHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 017008          258 SKISRAS--RASLATIRGDENDVEELEMLLE---------------LREYIDDTEDYINIQLDNHRNQLIQLELFLSSGT  320 (379)
Q Consensus       258 ~~l~~~~--~~~~~~~~~~~~~~eele~LLE---------------l~e~i~~te~~i~i~Ld~~rN~l~~i~~~LTi~t  320 (379)
                      ++..|++  +.+.  .-+..++++|+|||||               +++|||+|||++||+||++||+++++++.||+.|
T Consensus       279 ~~~~r~~~~~~~s--~~~~~dd~eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd~InI~LDs~RN~LiqleL~Lt~gT  356 (414)
T KOG2662|consen  279 AGISRAKSNRASS--TVRGEDDVEELEMLLEAYFMQIDSTLNKLESLREYIDDTEDIINIQLDSNRNELIQLELLLTIGT  356 (414)
T ss_pred             CCccchhhcccch--hccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            4333322  1111  1112689999999999               8999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 017008          321 VSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS  379 (379)
Q Consensus       321 ~i~~~~t~IaGifGMN~~~~~e~~~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~wl~~  379 (379)
                      ++++++++|||+||||+++++|+ .+|+|+||+++++++|+++|++..+|+|+||+++.
T Consensus       357 ~~~s~~~~va~ifGMNl~~~l~~-~~~~F~~vv~~~~~~~~~lf~~i~~~~k~krL~~~  414 (414)
T KOG2662|consen  357 FCLSVFSVVAGIFGMNLPSSLEE-DHYAFKWVVGITFTLCIVLFVVILGYAKLKRLLGL  414 (414)
T ss_pred             HHHHHHHHHHHHhcCCccchhcc-CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            99999999999999999999999 88999999999999999999999999999998763

>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)	Back alignment and domain information

>PRK09546 zntB zinc transporter; Reviewed	Back alignment and domain information

>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional	Back alignment and domain information

>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]	Back alignment and domain information

>PRK09546 zntB zinc transporter; Reviewed	Back alignment and domain information

>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]	Back alignment and domain information

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)	Back alignment and domain information

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans	Back alignment and domain information

>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function	Back alignment and domain information

>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional	Back alignment and domain information

>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		379
3rkg_A		261	Magnesium transporter MRS2, mitochondrial; matrix	2e-65
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae} Length = 261	Back alignment and structure

 Score =  208 bits (529), Expect = 2e-65
 Identities = 60/293 (20%), Positives = 110/293 (37%), Gaps = 43/293 (14%)

Query: 20  TKKKTRSSRSWILLDAAGNSTVL--DVDKHAIMHRVQIHARDLRILD-PLLSYPSTILGR 76
                    S  + ++ GN   +     K + +    +  RDLR +D   +    TI+ +
Sbjct: 9   ISASDSLFISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCK 68

Query: 77  EQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGG 136
              IV+NL HIKA+I  ++V + D  +      ++ L   L                   
Sbjct: 69  PNCIVINLLHIKALIERDKVYVFDTTNPSAAAKLSVLMYDLE------------------ 110

Query: 137 NDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVR 196
           + + + + +   +E RALE     + S L              L++L ++++   L  + 
Sbjct: 111 SKLSSTKNNSQFYEHRALESIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLRHLL 170

Query: 197 KLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTI 256
                +T    +   +RD L++LL++DDD+A++YL+ K +                    
Sbjct: 171 IKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKSPKDNF--------------- 215

Query: 257 GSKISRASRASLATIRGDENDVEELEMLLELREYIDDTEDYINIQLDNHRNQL 309
            S +                  E       L + I  TE+ +NI LD +RN L
Sbjct: 216 -SDLEMLIETYYTQCDEYVQQSE------SLIQDIKSTEEIVNIILDANRNSL 261

PyMOL of 3rkg

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		379
3rkg_A		261	Magnesium transporter MRS2, mitochondrial; matrix	100.0
2iub_A		363	CORA, divalent cation transport-related protein; m	100.0
4ev6_A		339	Magnesium transport protein CORA; membrane protein	100.0
4egw_A		280	Magnesium transport protein CORA; magnesium transp	99.64
3nvo_A		264	Zinc transport protein ZNTB; alpha-beta-alpha sand	99.46
3ck6_A		252	Putative membrane transport protein; APC91421.1, Z	99.33
2bbh_A		269	Divalent cation transport-related protein; transpo	99.1
2hn1_A		266	CORA, magnesium and cobalt transporter; integral m	99.06
2iub_A		363	CORA, divalent cation transport-related protein; m	94.06
4ev6_A		339	Magnesium transport protein CORA; membrane protein	92.83

>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=100.00  E-value=1.7e-49  Score=369.13  Aligned_cols=225  Identities=28%  Similarity=0.432  Sum_probs=206.5

Q ss_pred             ceeEEEEEcCCCCeeEEe--echhhHHHhhCCCcchhhhhcCCC-CCceeEeeeCCeEEEeccccceeeecCcEEeeCCC
Q 017008           26 SSRSWILLDAAGNSTVLD--VDKHAIMHRVQIHARDLRILDPLL-SYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPL  102 (379)
Q Consensus        26 ~~~~w~~id~~g~~~~~~--~~k~~l~~~~~l~~RDlr~ld~~~-~~~~~I~~R~~~Ilvnle~i~~II~~d~vl~f~~~  102 (379)
                      ...+|++||..|++..++  ++|++|++++||+|||||+|||.+ +++|+|++|++||+||++||||||++|+|++|++.
T Consensus        15 ~~~~ct~fD~~G~~~~~~~~~~K~~l~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd~~   94 (261)
T 3rkg_A           15 LFISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDTT   94 (261)
T ss_dssp             GEEEEEEECTTSCEEEEEEEEEHHHHHHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEEECCS
T ss_pred             ceEEEEEECCCCCEEEecccccHHHHHHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEEEcCC
Confidence            378999999999999986  899999999999999999999985 68889999999999999999999999999999998


Q ss_pred             CCcch----hHHHHHHHhhCcCCCcccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017008          103 DEHVI----PVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYP  178 (379)
Q Consensus       103 ~~~~~----~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfe~~~LE~iL~~~~~~Le~~~~~le~~~~~  178 (379)
                      ++.+.    .|+++++.|++.++                      .+.+||||+|||+||.++|+.|++++..++..+++
T Consensus        95 ~~~~~~~~~~f~~~l~~~l~~~~----------------------~~~lPFEfraLEa~L~~v~~~Le~e~~~l~~~~~~  152 (261)
T 3rkg_A           95 NPSAAAKLSVLMYDLESKLSSTK----------------------NNSQFYEHRALESIFINVMSALETDFKLHSQICIQ  152 (261)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCSS----------------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhhHHHHHHHHHHHhccCC----------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76554    58899999997642                      34799999999999999999999999999999999


Q ss_pred             HHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhhcccccCCCCCCCCCCCCCCCCcccc
Q 017008          179 ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTIGS  258 (379)
Q Consensus       179 ~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~dm~~m~Lt~~~~~~~~l~~~~~~~~~~~~~~~~~  258 (379)
                      +|++|++++++..|++|+..+++|+++.++++.+|++|+++|++|+||+.||||++..                      
T Consensus       153 ~L~~L~~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~----------------------  210 (261)
T 3rkg_A          153 ILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKS----------------------  210 (261)
T ss_dssp             HHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCC----------------------
T ss_pred             HHHHHHhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCC----------------------
Confidence            9999999999999999999999999999999999999999999999999999998742                      


Q ss_pred             chhhccccccccccCChhhHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Q 017008          259 KISRASRASLATIRGDENDVEELEMLLE---------------LREYIDDTEDYINIQLDNHRNQL  309 (379)
Q Consensus       259 ~l~~~~~~~~~~~~~~~~~~eele~LLE---------------l~e~i~~te~~i~i~Ld~~rN~l  309 (379)
                                     ..++|+|+|||||               ++++|++||++|++.||++||++
T Consensus       211 ---------------~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i~i~LD~~RN~L  261 (261)
T 3rkg_A          211 ---------------PKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIILDANRNSL  261 (261)
T ss_dssp             ---------------TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             ---------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence                           2568999999999               88999999999999999999985

PyMOL of 3rkg

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A	Back alignment and structure

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}	Back alignment and structure

>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}	Back alignment and structure

>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A	Back alignment and structure

>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*	Back alignment and structure

>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1	Back alignment and structure

>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}	Back alignment and structure

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A	Back alignment and structure

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		379
d2iuba2		64	f.17.3.1 (A:286-349) Magnesium transport protein C	2e-05

>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]} Length = 64	Back information, alignment and structure


class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 315 FLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVF 366
            L+         + +AGI+GMN  Y       + +  V+    +   +  V+
Sbjct: 8   VLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVY 59

PyMOL of d2iuba2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		379
d2iuba2		64	Magnesium transport protein CorA {Thermotoga marit	99.76
d2bbha1		232	Magnesium transport protein CorA, soluble domain {	99.49
d1lrza1		65	Methicillin resistance protein FemA probable tRNA-	85.32

>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=1.2e-19  Score=131.62  Aligned_cols=64  Identities=17%  Similarity=0.295  Sum_probs=44.3

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHhHhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 017008          308 QLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKG  375 (379)
Q Consensus       308 ~l~~i~~~LTi~t~i~~~~t~IaGifGMN~~~~~e~~~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~  375 (379)
                      |+|+.|++||++|++|.|+|+|||+||||++.+|+.+++++||++++++++++++    +++||||||
T Consensus         1 r~N~~mk~lT~it~iflP~t~i~gifGMN~~~~P~~~~~~~~~~~~~~~~~~~~~----~~~~f~rkk   64 (64)
T d2iuba2           1 KTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVI----MVVYFKKKK   64 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHH----HHTTTTSCC
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccHHHHHHHHHHHHHHHH----HHHHHhccC
Confidence            5788999999999999999999999999999888888999999998887666654    888999886

PyMOL of d2iuba2

>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure