Citrus Sinensis ID: 017036

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MEAFQKATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKEPSPDDSTFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKAVNNSKKVVGVIGKGHMNGVIYALVSDQGNLRFRDLAGKRPSGDGSNGWIASLLKSLVRDTVIGILLWALYEQVKGTLS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccEEEcccccccccccEEEcccccEEEEEEccccccccHHHHHHHHHHHcccEEEEEccHHHHHHHccccccccHHHHHHHcccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccEEEEccccHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccHHHHccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHcccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHHHccHHccccccccEEEEcccccccccccEEEEEcccEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEcHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccHHHHHHHHHcccccccHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
meafqkatfpifsanpnllstkpikpfkvsikpppqdfdfrteilSDSQATIAKACPELLNLADDGTLVLIQKrqfgpvpawrsefvepeniwligtthlsqdsaADVERVVRAIKPDNVVVELCRSRAgimytsnggendqQLRSNMfslsgtgffgavgrsidlGGQTALALRLLLALFSSkissdvnrpfgdEFRAARKVAEEVGAqivlgdrpieITLERAWNSLKWNEKLNLLINVIRgitspsdmsldnlkepspddstfQLYKKLsfscpslllpliHERDKYLAWSLKRskavnnskkVVGVIGKGHMNGVIYALVSdqgnlrfrdlagkrpsgdgsnGWIASLLKSLVRDTVIGILLWALYEQVKGTLS
Flexible Loop (DISEMBL)
meafqkatfpifsanpnllstkpikpFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVraikpdnvvVELCRSRAGIMytsnggendQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSskissdvnrpFGDEFRAARKVAEevgaqivlgdrpiEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKEPSPDDSTFQLYKKLSFSCPSLLLPLIHERDKYLAWslkrskavnnskKVVGVIGKGHMNGVIYALVSDQGNLRFRDLAGkrpsgdgsnGWIASLLKSLVRDTVIGILLWALYEQVKGTLS
Low Complexity Region (SEG)
MEAFQKATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTalalrlllalFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKEPSPDDSTFQLYKKlsfscpslllplIHERDKYLAWSLKRSKAVNNSKKVVGVIGKGHMNGVIYALVSDQGNLRFRDLAGKRPSGDGSNGWIASLLKSLVRDTVIGILLWALYEQVKGTLS
Disordered region (IsUnstruct)
**********IF*************************FDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTS***********NMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGIT*******************FQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKAVNNSKKVVGVIGKGHMNGVIYALVSDQGNLRFRDLA********SNGWIASLLKSLVRDTVIGILLWALYEQV*****
Disordered Region (DISOPRED)
******ATFPIFSANPNLLST**************************************************************SEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRA****************************GAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKEPSPDDSTFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKAVNNSKKVVGVIGKGHMNGVIYALVSDQ*******************GWIASLLKSLVRDTVIGILLWALYEQVKGTL*
Disordered Region (DISEMBL)
MEAFQKATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKEPSPDDSTFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKAVNNSKKVVGVIGKGHMNGVIYALVSDQGNLRFRDLAGKRPSGDGSNGWIASLLKSLVRDTVIGILLWALYEQVKGTLS
Disordered Region (DISPRO)
****QKATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKEPSPDDSTFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKAVNNSKKVVGVIGKGHMNGVIYALVSDQGNLRFRDLAGKRPSGDGSNGWIASLLKSLVRDTVIGILLWALYEQVKG***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAFQKATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKEPSPDDSTFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKAVNNSKKVVGVIGKGHMNGVIYALVSDQGNLRFRDLAGKRPSGDGSNGWIASLLKSLVRDTVIGILLWALYEQVKGTLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	378	2.2.26 [Sep-21-2011]
Q9H4I3	376	TraB domain-containing pr	yes	no	0.666	0.670	0.260	1e-15
Q99JY4	376	TraB domain-containing pr	yes	no	0.515	0.518	0.295	4e-15
Q58DF3	377	TraB domain-containing pr	yes	no	0.571	0.572	0.283	5e-15
Q58760	397	Uncharacterized protein M	yes	no	0.544	0.518	0.268	2e-12

>sp|Q9H4I3|TRABD_HUMAN TraB domain-containing protein OS=Homo sapiens GN=TRABD PE=1 SV=1

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 132/276 (47%), Gaps = 24/276 (8%)

Query: 34  PPQDFDFRTEILSDSQATIAKAC---PELLNLADDGTLVLIQK----RQFGPVPAWRSEF 86
           PP + +    + S++   + +     P+ L+  D   L+L  K    RQ   +P   ++ 
Sbjct: 8   PPHEANVEPVVPSEASEPVPRVLSGDPQNLSDVDAFNLLLEMKLKRRRQRPNLPRTVTQL 67

Query: 87  VEPE--NIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQL 144
           V  +   ++++GT H S DS  DV + +R ++PD VVVELC+ R  ++            
Sbjct: 68  VAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMDE-------- 119

Query: 145 RSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVA 204
            S +   +       + +++   G  +  +++LL   S+ I+  +    G EFR A K A
Sbjct: 120 -STLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEA 178

Query: 205 EEVG-AQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSD-MSLDNLKEPSPD 262
            +V   +  LGDRPI +T +RA  +L + +K+ L      G+   SD +S D+++     
Sbjct: 179 SKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAW----GLCFLSDPISKDDVERCKQK 234

Query: 263 DSTFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRS 298
           D   Q+  ++    P L   ++ ERD YL + L+++
Sbjct: 235 DLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQA 270

Homo sapiens (taxid: 9606)

>sp|Q99JY4|TRABD_MOUSE TraB domain-containing protein OS=Mus musculus GN=Trabd PE=2 SV=1

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 108/210 (51%), Gaps = 15/210 (7%)

Query: 91  NIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFS 150
            ++++GT H S DS  DV + +R ++PD VVVELC+ R  ++       +++ L      
Sbjct: 73  RVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKM-----DERTLLREAKE 127

Query: 151 LSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVG-A 209
           +S      AV ++  + G     +++LL   S+ I+  +    G EFR A K A +V   
Sbjct: 128 VSLEKLQQAVRQNGLMSG----LMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFC 183

Query: 210 QIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSD-MSLDNLKEPSPDDSTFQL 268
           +  LGDRPI +T +RA  +L + +K+ L      G+   SD +S D+++     D   Q+
Sbjct: 184 KFHLGDRPIPVTFKRAIAALSFWQKVKLAW----GLCFLSDPISKDDVERCKQKDLLEQM 239

Query: 269 YKKLSFSCPSLLLPLIHERDKYLAWSLKRS 298
             ++    P L   ++ ERD YL + L+++
Sbjct: 240 MAEMIGEFPDLHRTIVSERDVYLTYMLRQA 269

Mus musculus (taxid: 10090)

>sp|Q58DF3|TRABD_BOVIN TraB domain-containing protein OS=Bos taurus GN=TRABD PE=2 SV=1

 Score = 82.4 bits (202), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 17/233 (7%)

Query: 70  LIQKRQFGPVPAWRSEFVEPE--NIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRS 127
           L ++R+   +P   +E V  +   ++++GT H S DS  DV + +R ++PD VVVELC+ 
Sbjct: 51  LKRRRERPNLPHTVTELVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQY 110

Query: 128 RAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISS 187
           R  ++       +++ L      +S       + ++I   G  +  +++LL   S+ I+ 
Sbjct: 111 RVSMLKM-----DERTLLREAKEIS----LEKLQQAIRQNGVASGLMQMLLLKVSAHITE 161

Query: 188 DVNRPFGDEFRAARKVAEEVG-AQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGIT 246
            +    G EFR A K A  V   +  LGDRPI +T +RA  +L   +K+ L      G+ 
Sbjct: 162 QLGVAPGGEFREAFKEASRVPFCKFHLGDRPIPVTFKRAIAALSLWQKVKLAW----GLC 217

Query: 247 SPSD-MSLDNLKEPSPDDSTFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRS 298
             SD +S D+++     D   Q+  ++    P L   ++ ERD YL + L+++
Sbjct: 218 FLSDPISKDDVERCKQKDLLEQMMAEMVGEFPDLHRTIVSERDVYLTYMLRQA 270

Bos taurus (taxid: 9913)

>sp|Q58760|Y1365_METJA Uncharacterized protein MJ1365 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1365 PE=4 SV=1

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 113/238 (47%), Gaps = 32/238 (13%)

Query: 91  NIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFS 150
           +I+LIGT H+S+DS  +VE+++ ++ P+ + VEL   R   + T     N+++       
Sbjct: 18  DIYLIGTAHVSKDSIEEVEKIISSVSPEGIAVELDDRRFFSLIT-----NEEKKVDLKKV 72

Query: 151 LSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQ 210
           L    F                 + L+LA    KI        G E + A ++A + G  
Sbjct: 73  LKEGNFL-------------KFFIYLILANSQKKIGESFGIKPGSEMKKAIEIASKYGLP 119

Query: 211 IVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSL----DNLKEPSPDDSTF 266
           I L DR I+ITL R  + + + EK+ +   ++       ++      D +K P   +   
Sbjct: 120 IYLIDRDIDITLSRLMDRMTFKEKMKIFWELLNSDEEDLELDDDLLNDMVKNP---EKFI 176

Query: 267 QLYKKLSFSCPSLLLPLIHERDKYLAWSL-KRSKAVNNSKKVVGVIGKGHMNGVIYAL 323
           +L K++S   P++   L+ ERD+++A  L + SK   N   +V V+G GH+ G++  L
Sbjct: 177 KLLKEIS---PTIYEVLVDERDRFMAKRLFELSK---NKNSLVAVVGAGHVEGIVRYL 228

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
297741113	380	unnamed protein product [Vitis vinifera]	0.978	0.973	0.787	1e-163
225455471	385	PREDICTED: traB domain-containing protei	0.978	0.961	0.776	1e-163
255539559	390	conserved hypothetical protein [Ricinus	0.997	0.966	0.746	1e-159
357444077	380	TraB domain-containing protein [Medicago	0.976	0.971	0.721	1e-150
449446067	402	PREDICTED: uncharacterized LOC101219560	0.989	0.930	0.724	1e-150
356535904	371	PREDICTED: traB domain-containing protei	0.952	0.970	0.744	1e-148
147765742	364	hypothetical protein VITISV_019101 [Viti	0.933	0.969	0.710	1e-141
297792523	404	hypothetical protein ARALYDRAFT_495273 [	0.936	0.876	0.697	1e-138
19699285	391	AT5g52030/MSG15_11 [Arabidopsis thaliana	0.960	0.928	0.690	1e-137
42573660	402	TraB family protein [Arabidopsis thalian	0.960	0.902	0.671	1e-135

>gi|297741113|emb|CBI31844.3| unnamed protein product [Vitis vinifera]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 296/376 (78%), Positives = 335/376 (89%), Gaps = 6/376 (1%)

Query: 7   ATFPIFSANPNLLSTKPIKPFKVS--IKPPPQDFDFRTEILSDSQATIAKACPELLNLAD 64
           +TFPIF+ANPN  +TKP KP KVS  IKPPP DFDFR +IL DS+ATIA+  P+LL+LAD
Sbjct: 6   STFPIFTANPNFHTTKPSKPSKVSVSIKPPPPDFDFRAQILEDSRATIAQTHPQLLDLAD 65

Query: 65  DGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVEL 124
           +G+LV+I+KR FGPVPAWR+EFVEPE IWL+GTTH+S  SAADVERVV  + PDNVVVEL
Sbjct: 66  NGSLVVIEKRLFGPVPAWRTEFVEPEEIWLLGTTHISSFSAADVERVVEVVNPDNVVVEL 125

Query: 125 CRSR---AGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALF 181
           CRSR   AGIMYTSN GE +QQLRS+MFSLSGTGFFGA+GRSI+LGGQTALALRLLLA+F
Sbjct: 126 CRSRQVLAGIMYTSNHGELNQQLRSSMFSLSGTGFFGAIGRSINLGGQTALALRLLLAVF 185

Query: 182 SSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINV 241
           SSKISSDVNRPFGDEFRAARK +E+VGAQIVLGDRPIEITLERAWNSL+WNEKL+L+I+V
Sbjct: 186 SSKISSDVNRPFGDEFRAARKASEKVGAQIVLGDRPIEITLERAWNSLEWNEKLSLVISV 245

Query: 242 IRGITSPSDMSLDNLKEPSPDDSTFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKAV 301
           IRGITS S++S + +KE S DDSTFQLY +LS + PSLL PLIHERD YLAWSLKRSKAV
Sbjct: 246 IRGITS-SELSTNEMKELSTDDSTFQLYDQLSVAYPSLLQPLIHERDTYLAWSLKRSKAV 304

Query: 302 NNSKKVVGVIGKGHMNGVIYALVSDQGNLRFRDLAGKRPSGDGSNGWIASLLKSLVRDTV 361
           N  K+VVGVIGKGHMNGVIYALVSDQGNLRFRDL GKR SGDG+NGW+ SLLK+LVRDTV
Sbjct: 305 NGGKRVVGVIGKGHMNGVIYALVSDQGNLRFRDLVGKRSSGDGANGWVDSLLKNLVRDTV 364

Query: 362 IGILLWALYEQVKGTL 377
           IGILLWAL+EQ+K  L
Sbjct: 365 IGILLWALFEQIKTVL 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455471|ref|XP_002274961.1| PREDICTED: traB domain-containing protein-like [Vitis vinifera]

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 296/381 (77%), Positives = 335/381 (87%), Gaps = 11/381 (2%)

Query: 7   ATFPIFSANPNLLSTKPIKPFKVS--IKPPPQDFDFRTEILSDSQATIAKACPELLNLAD 64
           +TFPIF+ANPN  +TKP KP KVS  IKPPP DFDFR +IL DS+ATIA+  P+LL+LAD
Sbjct: 6   STFPIFTANPNFHTTKPSKPSKVSVSIKPPPPDFDFRAQILEDSRATIAQTHPQLLDLAD 65

Query: 65  DGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVEL 124
           +G+LV+I+KR FGPVPAWR+EFVEPE IWL+GTTH+S  SAADVERVV  + PDNVVVEL
Sbjct: 66  NGSLVVIEKRLFGPVPAWRTEFVEPEEIWLLGTTHISSFSAADVERVVEVVNPDNVVVEL 125

Query: 125 CRSR--------AGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRL 176
           CRSR        AGIMYTSN GE +QQLRS+MFSLSGTGFFGA+GRSI+LGGQTALALRL
Sbjct: 126 CRSRQVLSLVNGAGIMYTSNHGELNQQLRSSMFSLSGTGFFGAIGRSINLGGQTALALRL 185

Query: 177 LLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLN 236
           LLA+FSSKISSDVNRPFGDEFRAARK +E+VGAQIVLGDRPIEITLERAWNSL+WNEKL+
Sbjct: 186 LLAVFSSKISSDVNRPFGDEFRAARKASEKVGAQIVLGDRPIEITLERAWNSLEWNEKLS 245

Query: 237 LLINVIRGITSPSDMSLDNLKEPSPDDSTFQLYKKLSFSCPSLLLPLIHERDKYLAWSLK 296
           L+I+VIRGITS S++S + +KE S DDSTFQLY +LS + PSLL PLIHERD YLAWSLK
Sbjct: 246 LVISVIRGITS-SELSTNEMKELSTDDSTFQLYDQLSVAYPSLLQPLIHERDTYLAWSLK 304

Query: 297 RSKAVNNSKKVVGVIGKGHMNGVIYALVSDQGNLRFRDLAGKRPSGDGSNGWIASLLKSL 356
           RSKAVN  K+VVGVIGKGHMNGVIYALVSDQGNLRFRDL GKR SGDG+NGW+ SLLK+L
Sbjct: 305 RSKAVNGGKRVVGVIGKGHMNGVIYALVSDQGNLRFRDLVGKRSSGDGANGWVDSLLKNL 364

Query: 357 VRDTVIGILLWALYEQVKGTL 377
           VRDTVIGILLWAL+EQ+K  L
Sbjct: 365 VRDTVIGILLWALFEQIKTVL 385

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539559|ref|XP_002510844.1| conserved hypothetical protein [Ricinus communis] gi|223549959|gb|EEF51446.1| conserved hypothetical protein [Ricinus communis]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 291/390 (74%), Positives = 326/390 (83%), Gaps = 13/390 (3%)

Query: 1   MEAFQKATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELL 60
           M+    +TFPIFS  PN   +KP KP KVSIKPPP DFDFR+EIL +S+ TIAK  P+LL
Sbjct: 1   MDTLLNSTFPIFSKYPNFPISKPAKPLKVSIKPPPPDFDFRSEILQESRTTIAKNHPDLL 60

Query: 61  NLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNV 120
           +LAD G L+LI+KR FGPVPAWR+EFVEPE IWL+GT+H+S +SA  VERVVRA+KPDNV
Sbjct: 61  DLADSGNLILIEKRLFGPVPAWRTEFVEPEAIWLVGTSHISTESATQVERVVRAVKPDNV 120

Query: 121 VVELCRSR-------------AGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLG 167
           VVELCRSR             AGIMYTSN GE++QQLRSNMFSLSG GFFGAVGRSI+LG
Sbjct: 121 VVELCRSRQVLFLFMLIYKIKAGIMYTSNEGEDNQQLRSNMFSLSGNGFFGAVGRSINLG 180

Query: 168 GQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWN 227
           GQTALALRLLLALFSSKIS+DVNRPFGDEFRAARKV+EE+GAQIVLGDRPIEITLERAWN
Sbjct: 181 GQTALALRLLLALFSSKISNDVNRPFGDEFRAARKVSEEIGAQIVLGDRPIEITLERAWN 240

Query: 228 SLKWNEKLNLLINVIRGITSPSDMSLDNLKEPSPDDSTFQLYKKLSFSCPSLLLPLIHER 287
           +LKW EKL+L+ +V+RGITS S  S  + K P  DD TF LY+KLSFS PSLL PLIHER
Sbjct: 241 ALKWKEKLSLVSSVVRGITSSSHTSKKDFKVPDTDDDTFLLYEKLSFSYPSLLPPLIHER 300

Query: 288 DKYLAWSLKRSKAVNNSKKVVGVIGKGHMNGVIYALVSDQGNLRFRDLAGKRPSGDGSNG 347
           D YLAWSLKRSKAVNNSK+VVGVIGKGHMNGVIYALVSD GNLRFRDL G+R SG GS G
Sbjct: 301 DTYLAWSLKRSKAVNNSKRVVGVIGKGHMNGVIYALVSDLGNLRFRDLVGQRQSGSGSKG 360

Query: 348 WIASLLKSLVRDTVIGILLWALYEQVKGTL 377
            +  LLKSLVRDTVIG++LW LYEQ+KG L
Sbjct: 361 IVDELLKSLVRDTVIGVVLWVLYEQIKGAL 390

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444077|ref|XP_003592316.1| TraB domain-containing protein [Medicago truncatula] gi|355481364|gb|AES62567.1| TraB domain-containing protein [Medicago truncatula]

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 267/370 (72%), Positives = 320/370 (86%), Gaps = 1/370 (0%)

Query: 6   KATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADD 65
           K TFPIF+ NP  +S   ++P KVS+KPPP DF+++ EI  +S+A I +  PELL+LAD+
Sbjct: 7   KPTFPIFTTNPFFISKTSLRPLKVSVKPPPPDFNYKLEISDESRAVIEECYPELLDLADN 66

Query: 66  GTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELC 125
           G+LVL+QK++FGPVP+WR+EFVEPE IWLIGTTH+S++SA DVERVV+A+KPDNVVVELC
Sbjct: 67  GSLVLVQKKRFGPVPSWRTEFVEPEYIWLIGTTHVSKESAMDVERVVKAVKPDNVVVELC 126

Query: 126 RSRAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKI 185
           RSRAGIMY ++  + D+QLRS MFSLSGTGFFGA+GRSI+LGGQTALALRLLLA FSSKI
Sbjct: 127 RSRAGIMY-ADDDQLDKQLRSTMFSLSGTGFFGAIGRSINLGGQTALALRLLLAAFSSKI 185

Query: 186 SSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGI 245
           SS+++RPFGDEFRAARKV+EEVGAQ+VLGDRPIEITL+RAW +L W +KL+LL  V+RGI
Sbjct: 186 SSNIDRPFGDEFRAARKVSEEVGAQLVLGDRPIEITLQRAWKALNWTQKLSLLTIVVRGI 245

Query: 246 TSPSDMSLDNLKEPSPDDSTFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKAVNNSK 305
           TS SD+S D L++ S +D T QLY++LSFS PSLL PLIHERD YLAWSLKRSKAVNN K
Sbjct: 246 TSSSDISTDKLEKASSNDGTLQLYEQLSFSYPSLLPPLIHERDTYLAWSLKRSKAVNNCK 305

Query: 306 KVVGVIGKGHMNGVIYALVSDQGNLRFRDLAGKRPSGDGSNGWIASLLKSLVRDTVIGIL 365
           +VVGVIGKGHMNGVIYAL++D GNLRFRDL GK  +  GSNGWI  L+KSLVRDTVIGI+
Sbjct: 306 RVVGVIGKGHMNGVIYALLADTGNLRFRDLTGKNSNDGGSNGWIDDLVKSLVRDTVIGIV 365

Query: 366 LWALYEQVKG 375
           LWALYE + G
Sbjct: 366 LWALYEYING 375

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446067|ref|XP_004140793.1| PREDICTED: uncharacterized LOC101219560 [Cucumis sativus]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 271/374 (72%), Positives = 313/374 (83%)

Query: 1   MEAFQKATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELL 60
           MEA +    PIF ++P    TK +KP  VSI PPP DFDFR EI  DS+ATIA+  PELL
Sbjct: 23  MEALKSTAIPIFKSSPLSFPTKSLKPINVSINPPPSDFDFRLEISRDSRATIAETHPELL 82

Query: 61  NLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNV 120
           +LADDG LVL+ K +FGPVPAWR+EFVEP+ IWL+GT+H+S  S  DVERVVRA+KPDNV
Sbjct: 83  DLADDGILVLVDKTKFGPVPAWRAEFVEPQAIWLVGTSHISPKSVKDVERVVRAVKPDNV 142

Query: 121 VVELCRSRAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLAL 180
           VVELCRSRAGIMYT + GE DQ+L+SNMFSLSG GF GAV RSI+LGGQTALALRLLLA+
Sbjct: 143 VVELCRSRAGIMYTLDTGEPDQKLKSNMFSLSGDGFLGAVVRSINLGGQTALALRLLLAV 202

Query: 181 FSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLIN 240
           FSSKISSDVNRPFGDEFRAARK +EEVGAQIVLGDRPIEITLERAWN+L W EKL+L+ +
Sbjct: 203 FSSKISSDVNRPFGDEFRAARKASEEVGAQIVLGDRPIEITLERAWNALIWTEKLSLVSS 262

Query: 241 VIRGITSPSDMSLDNLKEPSPDDSTFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKA 300
           VIRGITS SD S +  +E   + S+ QLY+KL FS PSLL PLIHERD YLAWSLKRSKA
Sbjct: 263 VIRGITSESDFSQNIDEESDGNGSSLQLYEKLGFSYPSLLQPLIHERDTYLAWSLKRSKA 322

Query: 301 VNNSKKVVGVIGKGHMNGVIYALVSDQGNLRFRDLAGKRPSGDGSNGWIASLLKSLVRDT 360
           VN SK+VVGVIG+GHMNGVIYA+ SDQGNLRFRDLAGK+     SNG+++SLLK LVRDT
Sbjct: 323 VNKSKRVVGVIGRGHMNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKDLVRDT 382

Query: 361 VIGILLWALYEQVK 374
           +IG+++W LYEQ+K
Sbjct: 383 IIGVIVWVLYEQLK 396

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535904|ref|XP_003536482.1| PREDICTED: traB domain-containing protein-like [Glycine max]

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 271/364 (74%), Positives = 318/364 (87%), Gaps = 4/364 (1%)

Query: 16  PNLLSTKPIKP-FKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKR 74
           P  LST+P++P  KVS+KPPP DFD+R EI  +S+A IA++ PELL+LAD+G+LVL+QK+
Sbjct: 6   PFSLSTRPLRPILKVSVKPPPPDFDYRREISEESRAAIAESHPELLDLADNGSLVLVQKK 65

Query: 75  QFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYT 134
           +FGPVP+WR+EFVEPE+IWLIGTTH+S+ SA +VERVVRA++PDNVVVELCRSRAGIMY 
Sbjct: 66  RFGPVPSWRTEFVEPESIWLIGTTHVSEVSAVEVERVVRALRPDNVVVELCRSRAGIMYA 125

Query: 135 SNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFG 194
           +   E  +QLRSNMFSLSGTGFFGAVGRSI+LGGQTALALRLLLA FSSKISSD+NRPFG
Sbjct: 126 TANDELGKQLRSNMFSLSGTGFFGAVGRSINLGGQTALALRLLLATFSSKISSDINRPFG 185

Query: 195 DEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLD 254
           DEFRAARK +EE+GAQIVLGDRPIEITL+RAW ++KW +KL+L++++IRGI S S+ S++
Sbjct: 186 DEFRAARKASEEIGAQIVLGDRPIEITLQRAWKAMKWTQKLSLVLSIIRGIASSSNSSIN 245

Query: 255 NLK--EPSPDDSTFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKAVNNSKKVVGVIG 312
            LK  E S DD TFQLY++LSFS PSLL PLIHERD YLAWSLKRSKAVNNSK VVGVIG
Sbjct: 246 KLKLQEASSDDGTFQLYEQLSFSYPSLLPPLIHERDTYLAWSLKRSKAVNNSKNVVGVIG 305

Query: 313 KGHMNGVIYALVSDQGNLRFRDLAGKRP-SGDGSNGWIASLLKSLVRDTVIGILLWALYE 371
           KGHMNGVIYAL+SD GNLRFRDL GK    G GSNGWI  L+KSLVRDT+IGILLWALYE
Sbjct: 306 KGHMNGVIYALLSDTGNLRFRDLVGKNSYDGGGSNGWIDDLIKSLVRDTIIGILLWALYE 365

Query: 372 QVKG 375
            + G
Sbjct: 366 FING 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147765742|emb|CAN73376.1| hypothetical protein VITISV_019101 [Vitis vinifera]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/377 (71%), Positives = 309/377 (81%), Gaps = 24/377 (6%)

Query: 7   ATFPIFSANPNLLSTKPIKPFKVS--IKPPPQDFDFRTEILSDSQATIAKACPELLNLAD 64
           +TFPIF+ANPN  +TKP KP KVS  IKPPP DFDFR +IL DS+ATIA+  P+LL+LAD
Sbjct: 6   STFPIFTANPNFHTTKPSKPSKVSVSIKPPPPDFDFRAQILEDSRATIAQTHPQLLDLAD 65

Query: 65  DGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVEL 124
           +G+LV+I+KR FGPVPAWR+EFVEPE IWL+GTTH+S  SAADVERVV  + PDNVVVEL
Sbjct: 66  NGSLVVIEKRLFGPVPAWRTEFVEPEEIWLLGTTHISSFSAADVERVVEVVNPDNVVVEL 125

Query: 125 CRSRA----GIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLAL 180
           CRSR     G+++         ++R N        FF  +      GGQTALALRLLLA+
Sbjct: 126 CRSRQLMTDGLIWIHG------RIRQNCL------FFLHIA-----GGQTALALRLLLAV 168

Query: 181 FSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLIN 240
           FSSKISSDVNRPFGDEFRAARK +E+VGAQIVLGDRPIEITLERAWNSL+WNEKL+L+I+
Sbjct: 169 FSSKISSDVNRPFGDEFRAARKASEKVGAQIVLGDRPIEITLERAWNSLEWNEKLSLVIS 228

Query: 241 VIRGITSPSDMSLDNLKEPSPDDSTFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKA 300
           VIRGITS S++S + +K  S DDSTFQLY +LS + PSLL PLIHERD YLAWSLKRSKA
Sbjct: 229 VIRGITS-SELSTNEMKXLSTDDSTFQLYDQLSVAYPSLLQPLIHERDTYLAWSLKRSKA 287

Query: 301 VNNSKKVVGVIGKGHMNGVIYALVSDQGNLRFRDLAGKRPSGDGSNGWIASLLKSLVRDT 360
           VN  K+VVGVIGKGHMNGVIYALVSDQGNLRFRDL GKR SGDG+NGW+ SLLK+LVRDT
Sbjct: 288 VNGGKRVVGVIGKGHMNGVIYALVSDQGNLRFRDLVGKRSSGDGANGWVDSLLKNLVRDT 347

Query: 361 VIGILLWALYEQVKGTL 377
           VIGILLWAL+EQ+K  L
Sbjct: 348 VIGILLWALFEQIKTVL 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792523|ref|XP_002864146.1| hypothetical protein ARALYDRAFT_495273 [Arabidopsis lyrata subsp. lyrata] gi|297309981|gb|EFH40405.1| hypothetical protein ARALYDRAFT_495273 [Arabidopsis lyrata subsp. lyrata]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/374 (69%), Positives = 302/374 (80%), Gaps = 20/374 (5%)

Query: 19  LSTKPI-KPFKVSI--KPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQ 75
           L++KP  +P KVS+  + PP DFDFR EI SDS+A IAK  PELL+LAD+GTL+L+QK+ 
Sbjct: 19  LTSKPFFRPIKVSVSVQTPPPDFDFRNEIASDSRAAIAKTFPELLDLADNGTLILVQKQS 78

Query: 76  FGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSR------- 128
           FGPVPAWR EFVEPE IWL+GT+H+S +SA+ VERVVR +KPDNV VELCRSR       
Sbjct: 79  FGPVPAWRKEFVEPEAIWLVGTSHISPESASVVERVVRTVKPDNVAVELCRSRKVHFFIQ 138

Query: 129 ----AGIMYTSN-GGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSS 183
               AGIMYTS+ GGE DQ L+S + SL+GTGF GAVGRS+DLGGQTALALRLLLA+FSS
Sbjct: 139 LKLGAGIMYTSSVGGEVDQNLKSGVLSLTGTGFLGAVGRSLDLGGQTALALRLLLAVFSS 198

Query: 184 KISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIR 243
           K+SS  +RPFGDEFRAARK +EEVGAQ+VLGDRPIEITL+RAWNSLKW EK NL++ V R
Sbjct: 199 KLSSVADRPFGDEFRAARKASEEVGAQLVLGDRPIEITLQRAWNSLKWGEKFNLVMAVTR 258

Query: 244 GITSPSDMSLDNLKEPSPDDS--TFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKAV 301
            ITS S +S   LKE   D+S  + QLY++LSFS PSLLLPLIHERD YLAWSLKRSKAV
Sbjct: 259 AITSSSGISAAELKEQETDESNGSLQLYERLSFSYPSLLLPLIHERDTYLAWSLKRSKAV 318

Query: 302 NNSKKVVGVIGKGHMNGVIYALVSDQGNLRFRDLAGKRPSGDG---SNGWIASLLKSLVR 358
           N  K VVGVIGKGHMNGVIYALVSD G+LRF+DL G+R S DG   SNGWI  +LKSL R
Sbjct: 319 NGCKTVVGVIGKGHMNGVIYALVSDSGDLRFKDLVGRRDSSDGSTTSNGWIQKVLKSLAR 378

Query: 359 DTVIGILLWALYEQ 372
           DT+IG LLW LYE+
Sbjct: 379 DTIIGFLLWELYEE 392

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19699285|gb|AAL91254.1| AT5g52030/MSG15_11 [Arabidopsis thaliana] gi|23308347|gb|AAN18143.1| At5g52030/MSG15_11 [Arabidopsis thaliana]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 257/372 (69%), Positives = 301/372 (80%), Gaps = 9/372 (2%)

Query: 9   FPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTL 68
           FP F+   +    +PIK   VS++ PP DFDFR +I S+S+A IAK  PELL+LAD+GTL
Sbjct: 12  FPFFTPYTSKHIFRPIK-VSVSVQTPPPDFDFRNDIASESRAAIAKTYPELLDLADNGTL 70

Query: 69  VLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSR 128
           +L+QK+ FGPVPAWR EFVEPE IWL+GT+H+S +SA+ VERVVR +KPDNV VELCRSR
Sbjct: 71  ILLQKQSFGPVPAWRKEFVEPEAIWLVGTSHISPESASIVERVVRTVKPDNVAVELCRSR 130

Query: 129 AGIMYTSN-GGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISS 187
           AGIMYTS+ GGE DQ L+S   SL+GTGF GAVGRS+DLGGQTALALRLLLA+FSSK+SS
Sbjct: 131 AGIMYTSSVGGEVDQNLKSGELSLTGTGFLGAVGRSLDLGGQTALALRLLLAVFSSKLSS 190

Query: 188 DVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITS 247
             +RPFGDEFRAARK +EEVGAQ+VLGDRPIEITL+RAWNSLKW EK NL++ V R ITS
Sbjct: 191 VADRPFGDEFRAARKASEEVGAQLVLGDRPIEITLQRAWNSLKWGEKFNLVMAVTRVITS 250

Query: 248 PSDMSLDNLKEPSPDDS--TFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKAVNNSK 305
            S +S   LKE   D++  + QLY++LSFS P+LL+PLIHERD YLAWSLKRSKAVN  K
Sbjct: 251 SSGISAAELKEQETDENSGSLQLYERLSFSYPALLMPLIHERDTYLAWSLKRSKAVNGCK 310

Query: 306 KVVGVIGKGHMNGVIYALVSDQGNLRFRDLAGKRPSGDG-----SNGWIASLLKSLVRDT 360
            VVGVIGKGHMNGVIYALVSD G+LRFRDL G+  S +G     SNGWI  +LKS VRDT
Sbjct: 311 TVVGVIGKGHMNGVIYALVSDSGDLRFRDLVGRGDSYNGGTGTTSNGWIQKVLKSFVRDT 370

Query: 361 VIGILLWALYEQ 372
           +IG LLW LYEQ
Sbjct: 371 IIGFLLWELYEQ 382

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573660|ref|NP_974926.1| TraB family protein [Arabidopsis thaliana] gi|10177738|dbj|BAB11051.1| unnamed protein product [Arabidopsis thaliana] gi|332008777|gb|AED96160.1| TraB family protein [Arabidopsis thaliana]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 257/383 (67%), Positives = 301/383 (78%), Gaps = 20/383 (5%)

Query: 9   FPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTL 68
           FP F+   +    +PIK   VS++ PP DFDFR +I S+S+A IAK  PELL+LAD+GTL
Sbjct: 12  FPFFTPYTSKHIFRPIK-VSVSVQTPPPDFDFRNDIASESRAAIAKTYPELLDLADNGTL 70

Query: 69  VLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSR 128
           +L+QK+ FGPVPAWR EFVEPE IWL+GT+H+S +SA+ VERVVR +KPDNV VELCRSR
Sbjct: 71  ILLQKQSFGPVPAWRKEFVEPEAIWLVGTSHISPESASIVERVVRTVKPDNVAVELCRSR 130

Query: 129 -----------AGIMYTSN-GGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRL 176
                      AGIMYTS+ GGE DQ L+S   SL+GTGF GAVGRS+DLGGQTALALRL
Sbjct: 131 KVQFFIQTKFGAGIMYTSSVGGEVDQNLKSGELSLTGTGFLGAVGRSLDLGGQTALALRL 190

Query: 177 LLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLN 236
           LLA+FSSK+SS  +RPFGDEFRAARK +EEVGAQ+VLGDRPIEITL+RAWNSLKW EK N
Sbjct: 191 LLAVFSSKLSSVADRPFGDEFRAARKASEEVGAQLVLGDRPIEITLQRAWNSLKWGEKFN 250

Query: 237 LLINVIRGITSPSDMSLDNLKEPSPDDS--TFQLYKKLSFSCPSLLLPLIHERDKYLAWS 294
           L++ V R ITS S +S   LKE   D++  + QLY++LSFS P+LL+PLIHERD YLAWS
Sbjct: 251 LVMAVTRVITSSSGISAAELKEQETDENSGSLQLYERLSFSYPALLMPLIHERDTYLAWS 310

Query: 295 LKRSKAVNNSKKVVGVIGKGHMNGVIYALVSDQGNLRFRDLAGKRPSGDG-----SNGWI 349
           LKRSKAVN  K VVGVIGKGHMNGVIYALVSD G+LRFRDL G+  S +G     SNGWI
Sbjct: 311 LKRSKAVNGCKTVVGVIGKGHMNGVIYALVSDSGDLRFRDLVGRGDSYNGGTGTTSNGWI 370

Query: 350 ASLLKSLVRDTVIGILLWALYEQ 372
             +LKS VRDT+IG LLW LYEQ
Sbjct: 371 QKVLKSFVRDTIIGFLLWELYEQ 393

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
TAIR|locus:2173073	402	AT5G52030 "AT5G52030" [Arabido	0.960	0.902	0.624	2.3e-117
TAIR|locus:2207205	371	AT1G05270 "AT1G05270" [Arabido	0.362	0.369	0.340	1.3e-20
TAIR|locus:2062581	360	AT2G32340 "AT2G32340" [Arabido	0.328	0.344	0.304	1.3e-19
ZFIN|ZDB-GENE-030131-1301	360	trabd "TraB domain containing"	0.756	0.794	0.262	1.5e-14
MGI|MGI:1915226	376	Trabd "TraB domain containing"	0.857	0.861	0.243	6.4e-13
DICTYBASE|DDB_G0293922	381	DDB_G0293922 [Dictyostelium di	0.642	0.637	0.216	5.2e-10

TAIR|locus:2173073 AT5G52030 "AT5G52030" [Arabidopsis thaliana (taxid:3702)]

 Score = 1156 (412.0 bits), Expect = 2.3e-117, P = 2.3e-117
 Identities = 239/383 (62%), Positives = 280/383 (73%)

Query:     9 FPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTL 68
             FP F+   +    +PIK   VS++ PP DFDFR +I S+S+A IAK  PELL+LAD+GTL
Sbjct:    12 FPFFTPYTSKHIFRPIK-VSVSVQTPPPDFDFRNDIASESRAAIAKTYPELLDLADNGTL 70

Query:    69 VLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSR 128
             +L+QK+ FGPVPAWR EFVEPE IWL+GT+H+S +SA+ VERVVR +KPDNV VELCRSR
Sbjct:    71 ILLQKQSFGPVPAWRKEFVEPEAIWLVGTSHISPESASIVERVVRTVKPDNVAVELCRSR 130

Query:   129 -----------AGIMYTSN-GGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTXXXXXX 176
                        AGIMYTS+ GGE DQ L+S   SL+GTGF GAVGRS+DLGGQT      
Sbjct:   131 KVQFFIQTKFGAGIMYTSSVGGEVDQNLKSGELSLTGTGFLGAVGRSLDLGGQTALALRL 190

Query:   177 XXXXFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLN 236
                 FSSK+SS  +RPFGDEFRAARK +EEVGAQ+VLGDRPIEITL+RAWNSLKW EK N
Sbjct:   191 LLAVFSSKLSSVADRPFGDEFRAARKASEEVGAQLVLGDRPIEITLQRAWNSLKWGEKFN 250

Query:   237 LLINVIRGITSPSDMSLDNLKEPSPDDST--FQLYKKXXXXXXXXXXXXIHERDKYLAWS 294
             L++ V R ITS S +S   LKE   D+++   QLY++            IHERD YLAWS
Sbjct:   251 LVMAVTRVITSSSGISAAELKEQETDENSGSLQLYERLSFSYPALLMPLIHERDTYLAWS 310

Query:   295 LKRSKAVNNSKKVVGVIGKGHMNGVIYALVSDQGNLRFRDLAGKRPSGDG-----SNGWI 349
             LKRSKAVN  K VVGVIGKGHMNGVIYALVSD G+LRFRDL G+  S +G     SNGWI
Sbjct:   311 LKRSKAVNGCKTVVGVIGKGHMNGVIYALVSDSGDLRFRDLVGRGDSYNGGTGTTSNGWI 370

Query:   350 ASLLKSLVRDTVIGILLWALYEQ 372
               +LKS VRDT+IG LLW LYEQ
Sbjct:   371 QKVLKSFVRDTIIGFLLWELYEQ 393

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2207205 AT1G05270 "AT1G05270" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
 Identities = 48/141 (34%), Positives = 79/141 (56%)

Query:   181 FSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLIN 240
             F +KI+S +    G EFR A + A + G +++LGDRP++ITL+R W  +    K+  L +
Sbjct:   182 FLAKIASHLEVFPGAEFRVAYEEAIKYGGKVILGDRPVQITLKRTWAKMPLWHKVKFLYS 241

Query:   241 VI-RGITSPSDMSLDN-LKEPSPDDSTFQLYKKXXXXXXXXXXXXIHERDKYLAWSLKRS 298
             ++ + +  P    L+  LK+    D    + ++            +HERD+Y+A SL R 
Sbjct:   242 ILFQAVFLPGAEELEKMLKDMDNVDMVTLVIQEMSKEFPTLMDTIVHERDQYMASSLLRV 301

Query:   299 KAVNNSKKVVGVIGKGHMNGV 319
              + ++S  VV VIGKGH+NG+
Sbjct:   302 ASDHSS--VVAVIGKGHINGI 320

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

TAIR|locus:2062581 AT2G32340 "AT2G32340" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
 Identities = 39/128 (30%), Positives = 69/128 (53%)

Query:   194 GDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVI-RGITSPSDMS 252
             G EFR   + A + G ++ LGDR ++ITL+R W  +    K+ L+ +++ + +  P+   
Sbjct:   186 GAEFRVGFEEANKYGGRVFLGDRSVQITLQRTWGKMPLWHKIKLVYSIVSQAVFLPNPKE 245

Query:   253 LDN-LKEPSPDDSTFQLYKKXXXXXXXXXXXXIHERDKYLAWSLKRSKAVNNSKKVVGVI 311
             L+  LK+    D      ++            +HERDKY+A+ L R  + ++S  VV V+
Sbjct:   246 LEKMLKDLGDGDMLTLAIQEMSTEFPTLMETLVHERDKYMAYQLLRIASEHSS--VVAVV 303

Query:   312 GKGHMNGV 319
             G+GH+ G+
Sbjct:   304 GRGHLQGI 311

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030131-1301 trabd "TraB domain containing" [Danio rerio (taxid:7955)]

 Score = 207 (77.9 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 84/320 (26%), Positives = 146/320 (45%)

Query:    69 VLIQKRQFGP-VPAWRSEFVEPEN--IWLIGTTHLSQDSAADVERVVRAIKPDNVVVELC 125
             V  Q+RQ  P +P   +    PE   ++L+GT H S  S  DV   +RA++PD VVVELC
Sbjct:    39 VRTQRRQKEPDLPETVTRLTTPEGSVVYLVGTAHFSDSSKKDVATTIRAVQPDVVVVELC 98

Query:   126 RSRAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTXXXXXXXXXXFSSKI 185
             + R  ++       +++ L      ++       V ++I   G             S+ I
Sbjct:    99 QYRVSMLKM-----DEKTLLKEAKDIN----LEKVQQAIKQNGVMSGLMQILLLKVSAHI 149

Query:   186 SSDVNRPFGDEFRAARKVAEEVG-AQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRG 244
             +  +    G EFR A K A +V   +  LGDRPI +T +RA  +L   +K  L      G
Sbjct:   150 TEQLGMAPGGEFREAFKEAGKVPFCKFHLGDRPIPVTFKRAIAALSLWQKARLAW----G 205

Query:   245 ITSPSD-MSLDNLKEPSPDDSTFQLYKKXXXXXXXXXXXXIHERDKYLAWSLKRS----K 299
             +   SD +S +++++    D   Q   +            + ERD YL  +L+++    +
Sbjct:   206 LCFLSDPISKEDVEKCKQKDLLEQTMSEMIGEFPALHRTIVAERDIYLTHTLRQAARCVE 265

Query:   300 AVNNSKKV----VGVIGKGHMNGVIYALVSDQGNLRFRDLAGKRPSGDGSNGWIASLLKS 355
             A   ++KV    VGV+G GH++G+      D+  L   ++    P        +  ++++
Sbjct:   266 APPTAEKVPAVVVGVVGMGHVSGIERNW--DK-ELNIHEIMSVAPPSR-----LGRVVRT 317

Query:   356 LVRDTVIGILLWALYEQVKG 375
             +++  + G+L +A Y   KG
Sbjct:   318 VLKGAMWGLLGYACYRASKG 337

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1915226 Trabd "TraB domain containing" [Mus musculus (taxid:10090)]

 Score = 194 (73.4 bits), Expect = 6.4e-13, P = 6.4e-13
 Identities = 90/369 (24%), Positives = 164/369 (44%)

Query:    34 PPQDFDFRTEILSDSQATIAKAC---PELLNLADDGTLVL---IQKRQFGP-VPAWRSEF 86
             P Q+ D    + + +   + +     P+ ++  D   L+L   +++R+  P +P   ++ 
Sbjct:     7 PAQEADVEPVVTAGTSEAVPRVLAGDPQNISDVDAFNLLLEMKLKRRRERPNLPRTVTQL 66

Query:    87 VEPEN--IWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQL 144
             V  +   ++++GT H S DS  DV + +R ++PD VVVELC+ R  ++      E     
Sbjct:    67 VAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMD---ERTLLR 123

Query:   145 RSNMFSLSGTGFFGAVGRSIDLGGQTXXXXXXXXXXFSSKISSDVNRPFGDEFRAARKVA 204
              +   SL        + +++   G             S+ I+  +    G EFR A K A
Sbjct:   124 EAKEVSLE------KLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEA 177

Query:   205 EEVG-AQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSD-MSLDNLKEPSPD 262
              +V   +  LGDRPI +T +RA  +L + +K+ L      G+   SD +S D+++     
Sbjct:   178 SKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVKLAW----GLCFLSDPISKDDVERCKQK 233

Query:   263 DSTFQLYKKXXXXXXXXXXXXIHERDKYLAWSLKRS-------KAVNNSKK------VVG 309
             D   Q+  +            + ERD YL + L+++       +A +   +      VVG
Sbjct:   234 DLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVG 293

Query:   310 VIGKGHMNGVIYALVSDQGNLRFRDLAGKRPSGDGSNGWIASLLKSLVRDTVIGILLWAL 369
             V+G GH+ G+     +D  N++   +    PS  G    +A      V+    G+L ++L
Sbjct:   294 VVGMGHVPGIEKNWSTDL-NIQ-EIMTVPPPSISGRVSRVA------VKAAFFGLLGYSL 345

Query:   370 YEQVKGTLS 378
             Y   + TL+
Sbjct:   346 YWMGRRTLN 354

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0293922 DDB_G0293922 [Dictyostelium discoideum (taxid:44689)]

 Score = 169 (64.5 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 56/259 (21%), Positives = 120/259 (46%)

Query:    92 IWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRS---NM 148
             ++LIGT H+SQ S  D++ ++  ++PD + +EL   RA ++ ++      Q L+    N 
Sbjct:    54 VYLIGTIHVSQQSCEDIKTLLSIVEPDTIFIELSNERAPLLTSTEDQIISQLLKKPNINW 113

Query:   149 FSLSGTGFFGAVGRSIDL-GGQTXXXXXXXXXXFSSKISSDVNRPF--GDEFRAARKVAE 205
             F+   + F+ ++ ++      +             + ++++ N+P+  G+EFR   + ++
Sbjct:   114 FTTKLSDFYLSIHQNFYYYTTKISMNNKFLKNQIGNNVNNENNKPYIYGNEFRIGYQYSK 173

Query:   206 EVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKEP---SPD 262
                  ++LGDR  + +  R +N L     L L    ++      +  +D ++E    S +
Sbjct:   174 LNKCSVLLGDRNFKSSWNRIFNYLDLKTILELGGYGVKTFFKIYNQPIDEIREEYYKSVN 233

Query:   263 DSTFQLYKKXXXXXX---XXXXXXIHERDKYLAWSLKRSKAVNNSKKVVGVIGKGHMNGV 319
             +     +K                I ERD+++A  ++ +    +SK++V ++GKGH+ G+
Sbjct:   234 ELIDASWKSDIWRRDLPMAVQRGLIDERDQFMASCIRDAP---HSKRMVAIVGKGHIKGI 290

Query:   320 IYALVSDQGNLRFR-DLAG 337
                +   +     R DL G
Sbjct:   291 SNHINDKEEGFYIRSDLEG 309


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.135   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      378       356   0.00080  117 3  11 22  0.42    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  229 KB (2125 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.80u 0.11s 27.91t   Elapsed:  00:00:01
  Total cpu time:  27.81u 0.11s 27.92t   Elapsed:  00:00:01
  Start:  Fri May 10 08:44:09 2013   End:  Fri May 10 08:44:10 2013

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00007407001 SubName- Full=Chromosome chr16 scaffold_189, whole genome shotgun sequence; (382 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	378
COG1916	388	COG1916, COG1916, Uncharacterized homolog of PrgY	1e-34
TIGR00261	380	TIGR00261, traB, pheromone shutdown-related protei	9e-26
pfam01963	261	pfam01963, TraB, TraB family	4e-21

>gnl|CDD|224828 COG1916, COG1916, Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]

 Score =  131 bits (331), Expect = 1e-34
 Identities = 75/245 (30%), Positives = 123/245 (50%), Gaps = 25/245 (10%)

Query: 87  VEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRS 146
            E + ++++GT H+S+DS  +V R++   KPD V VEL  +R   +   +  E D     
Sbjct: 9   FEEKEVYILGTAHVSKDSVEEVRRIILEEKPDAVAVELDEARLLSLLGGSREELD----- 63

Query: 147 NMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEE 206
                        + + +  G    L   LLLA F  K+  ++    G E +AA + A E
Sbjct: 64  -------------LAQVLKEGKAFFLLAGLLLAYFQRKLGKELGVKPGSEMKAAIEAARE 110

Query: 207 VGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSP--SDMSLDNLKEPSPDDS 264
           +GA + L DR I +TL RAW  + + EKL L+ ++I G+  P  S++ +D LK+     +
Sbjct: 111 LGAPVALIDRDIGVTLRRAWAKMPFWEKLKLISSLISGLLFPGQSEIEIDELKQEDVLSA 170

Query: 265 TFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKAVNNSKKVVGVIGKGHMNGVIYALV 324
             Q +++ S   P++   LI ERD+Y+A +L     V+    VV V+G GH+ G+   L 
Sbjct: 171 LMQEFRRFS---PTVYKVLIDERDRYMARNLLE--IVSILNDVVAVVGAGHVRGIERYLK 225

Query: 325 SDQGN 329
           +    
Sbjct: 226 NSDSA 230

Length = 388

>gnl|CDD|129363 TIGR00261, traB, pheromone shutdown-related protein TraB

 Score =  106 bits (266), Expect = 9e-26
 Identities = 60/237 (25%), Positives = 112/237 (47%), Gaps = 23/237 (9%)

Query: 87  VEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRS 146
           +  + I+++GT H+S+ S+ +V  ++  +KPD + VEL   R   +  +     D     
Sbjct: 1   IHEKTIYILGTAHVSKKSSEEVANLIEILKPDYIAVELDERRYHSLLNTKWRNLD----- 55

Query: 147 NMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEE 206
                        + + +  G    L + L+LA F  K+  +     G E + A + A++
Sbjct: 56  -------------IDKVLKQGNAFFLIINLILANFQKKLGEEQGIKPGSEMKTAIEKAKK 102

Query: 207 VGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKEPSPDDSTF 266
            G  ++L DR IE TL+RAW S+ + EK  ++ ++     +  +  ++ L E        
Sbjct: 103 HGIPLILIDRDIETTLKRAWISITFFEKAKIISSLFSSTDAKIEDEIEKLLEQDALSKIM 162

Query: 267 QLYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKAVNNSKKVVGVIGKGHMNGVIYAL 323
           +   K+S   P +   LI ERD+++A  L   +   N   +V V+G GH++G++  L
Sbjct: 163 KELSKIS---PKVKKVLIDERDEFMANKL--LEGEGNKNIIVAVVGAGHVSGIMRTL 214

traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family [Unknown function, General]. Length = 380

>gnl|CDD|216812 pfam01963, TraB, TraB family

 Score = 91.3 bits (227), Expect = 4e-21
 Identities = 60/261 (22%), Positives = 107/261 (40%), Gaps = 39/261 (14%)

Query: 91  NIWLIGTTHLSQDSAADVERVVRAI--KPDNVVVELC--------RSRAGIMYTSNG--- 137
            I+L+GT H+S  S   +   +     + D VVVEL              +    +G   
Sbjct: 11  TIYLLGTAHVSDPSLYPLPPAIEKALEQADAVVVELDPAALPALLLLLPKLAMLPDGPTL 70

Query: 138 ----GENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALF-SSKISSDVNRP 192
                  +        +  G      + +++       LAL L LA F  + ++ ++   
Sbjct: 71  DDLLSPEEWARLDEALAARG------IPQALKKFKPWFLALLLALAAFQQAGLAPELGVD 124

Query: 193 FGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMS 252
            G E RAA +    +G    L DR I++TL RA       E+L LL + +  +    D+ 
Sbjct: 125 PGLEKRAAAEGKPVLG----LEDREIQLTLLRALP---LEEQLALLRSTLDELDKGDDLL 177

Query: 253 ---LDNLKEPSPDDSTFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKAVNNSKKVVG 309
              ++  KE   + +  +   +   + P L   L+ ER++Y A  ++   A+ +  KV  
Sbjct: 178 EELVEAWKEGDLE-ALMEELAEDMAASPELYEVLLDERNRYWAEKIEA--ALKSGGKVFV 234

Query: 310 VIGKGHMNGV--IYALVSDQG 328
           V+G GH+ G   +  L+  +G
Sbjct: 235 VVGAGHLPGEDGVLGLLRARG 255

pAD1 is a hemolysin/bacteriocin plasmid originally identified in Enterococcus faecalis DS16. It encodes a mating response to a peptide sex pheromone, cAD1, secreted by recipient bacteria. Once the plasmid pAD1 is acquired, production of the pheromone ceases--a trait related in part to a determinant designated traB. However a related protein is found in C. elegans, suggesting that members of the TraB family have some more general function. This family also includes the bacterial GumN protein. The family has a conserved GXXH motif close to the N-terminus, a conserved glutamate and a conserved arginine that may be catalytic. The family also includes a second conserved GXXH motif near the C-terminus. Length = 261

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	378
TIGR00261	380	traB pheromone shutdown-related protein TraB. traB	100.0
COG1916	388	Uncharacterized homolog of PrgY (pheromone shutdow	100.0
KOG2860	359	consensus Uncharacterized conserved protein, conta	100.0
PF01963	259	TraB: TraB family; InterPro: IPR002816 In prokaryo	99.93
COG3735	299	Uncharacterized protein conserved in bacteria [Fun	99.44
PF04187	213	DUF399: Protein of unknown function, DUF399; Inter	95.9
KOG2860	359	consensus Uncharacterized conserved protein, conta	94.16

>TIGR00261 traB pheromone shutdown-related protein TraB

Probab=100.00  E-value=8.6e-62  Score=486.01  Aligned_cols=254  Identities=27%  Similarity=0.450  Sum_probs=224.1

Q ss_pred             CCceEEEEeecCCChhhHHHHHHHHHHcCCCeEEEeeccchhccccCCC--CCCChhhhhhhhccccCCccccccccccc
Q 017036           88 EPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSN--GGENDQQLRSNMFSLSGTGFFGAVGRSID  165 (378)
Q Consensus        88 ~~~~VyLVGTaHvS~~Sa~~V~~vI~~vkPD~V~VELc~~R~~~L~~~~--~~~l~~~l~~~~~~~~~~~~~~~~~~si~  165 (378)
                      ++++||||||||+|++|+++|+++|+++|||+||||||++|++.|....  +.++.++++                    
T Consensus         2 ~~~~i~lvGTAHvS~~S~~eV~~~I~~~~PD~VaVELd~~R~~~l~~~~~~~~di~~vlk--------------------   61 (380)
T TIGR00261         2 HEKTIYILGTAHVSKKSSEEVANLIEILKPDYIAVELDERRYHSLLNTKWRNLDIDKVLK--------------------   61 (380)
T ss_pred             CCcEEEEEecccCCHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHhhhhhccCCHHHHhh--------------------
Confidence            5799999999999999999999999999999999999999999887652  334455544                    


Q ss_pred             ccchhHHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhCCeEeecCchhHHHHHHHHccCChHHHHHHHHHHHHhc
Q 017036          166 LGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGI  245 (378)
Q Consensus       166 ~gg~~~l~~~llL~~~q~~l~~~lg~~PG~Efr~Ai~~A~~~ga~VvLgDR~i~iTl~R~~~~ls~~eklkl~~~ll~~~  245 (378)
                      .|+...++.+++|++||+++++++|++||+||++|+++|++.||+|+|+||||++|++|+|++|++|+|+|++++++.+.
T Consensus        62 ~g~~~~~l~~~~La~~q~~l~~~~gi~PG~Em~~Ai~~A~e~g~~v~LiDRdI~iTl~R~w~~~~~~eK~kl~~~l~~~~  141 (380)
T TIGR00261        62 QGNAFFLIINLILANFQKKLGEEQGIKPGSEMKTAIEKAKKHGIPLILIDRDIETTLKRAWISITFFEKAKIISSLFSST  141 (380)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCcEEEeCCCHhHHHHHHHHhCCHHHHHHHHHHHHhcc
Confidence            34445678899999999999999999999999999999999999999999999999999999999999999999998766


Q ss_pred             cCCCCCChhhhcCCCCchHHHHHHHHHHhhCCCcccchhhhccHHHHHHHHHhhhhCCCCeEEEEECCCchhhhHhhhhh
Q 017036          246 TSPSDMSLDNLKEPSPDDSTFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKAVNNSKKVVGVIGKGHMNGVIYALVS  325 (378)
Q Consensus       246 ~~~~~~s~eevE~~k~~D~l~~l~~el~~~~P~l~~~LidERD~yma~~L~~~~~~~~~~~vVaVVGagHl~GI~~~L~~  325 (378)
                      +   +.+++++|+++++|.++++++|+++.+|.++++|++|||+|||++|.+..  .+++++|+||||||++||+++|.+
T Consensus       142 ~---~~~e~~ie~l~~~d~L~~~~~e~~~~~P~l~~~LIdERD~ymA~~L~~l~--~~~~~VvaVVGAGHl~GI~~~l~~  216 (380)
T TIGR00261       142 D---AKIEDEIEKLLEQDALSKIMKELSKISPKVKKVLIDERDEFMANKLLEGE--GNKNIIVAVVGAGHVSGIMRTLKK  216 (380)
T ss_pred             c---cCCHHHHHHhhhhhHHHHHHHHHhhhCCchhhHHHHHHHHHHHHHHHHhh--cCCCcEEEEECcchhhhHHHHHhC
Confidence            5   46789999999999999999999999999999999999999999999874  345799999999999999999987


Q ss_pred             cCC--CCCcccccCCCCCCCCCChhH-HHHHHHHHHHHHHHHHH-HHHHH
Q 017036          326 DQG--NLRFRDLAGKRPSGDGSNGWI-ASLLKSLVRDTVIGILL-WALYE  371 (378)
Q Consensus       326 ~~~--~~~~~~l~~~~~~~~~~~~~~-~k~~~~~~~~~~ig~~~-~~~~~  371 (378)
                      ++.  .+++.+|.++|     +++++ .|+++|+|+++++++++ |+||.
T Consensus       217 ~~~~~~~~~~~L~~~p-----~~~~~~~k~~~~~i~~~i~~~~~~~~~~~  261 (380)
T TIGR00261       217 LQNKNIINLEELEKVK-----KKHFSFSKVLSYLIAISIILLFVMISFYL  261 (380)
T ss_pred             ccccCCCChHHHhcCC-----CCCccHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            643  33456666665     44444 49999999999999888 99886

traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.

>COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]

Probab=100.00  E-value=1.1e-57  Score=445.55  Aligned_cols=257  Identities=30%  Similarity=0.436  Sum_probs=223.6

Q ss_pred             CCceEEEEeecCCChhhHHHHHHHHHHcCCCeEEEeeccchhccccCCCC--CCChhhhhhhhccccCCccccccccccc
Q 017036           88 EPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNG--GENDQQLRSNMFSLSGTGFFGAVGRSID  165 (378)
Q Consensus        88 ~~~~VyLVGTaHvS~~Sa~~V~~vI~~vkPD~V~VELc~~R~~~L~~~~~--~~l~~~l~~~~~~~~~~~~~~~~~~si~  165 (378)
                      +.++|||+||||+|++|.++|+++|++.+||+|+||||+.|+..|.....  .++.+++|+                   
T Consensus        10 ~~~~v~iiGTAHVS~~SveeVrr~I~~~~PDaVAVELd~~R~~sLl~~~~~~ldl~~vlk~-------------------   70 (388)
T COG1916          10 EEKEVYILGTAHVSKDSVEEVRRIILEEKPDAVAVELDEARLLSLLGGSREELDLAQVLKE-------------------   70 (388)
T ss_pred             ccceEEEEeeeecCHhHHHHHHHHHHhcCCCeEEEEecHHHHHHHhcCCcccCCHHHHHHc-------------------
Confidence            45699999999999999999999999999999999999999988877655  444566654                   


Q ss_pred             ccchhHHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhCCeEeecCchhHHHHHHHHccCChHHHHHHHHHHHHhc
Q 017036          166 LGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGI  245 (378)
Q Consensus       166 ~gg~~~l~~~llL~~~q~~l~~~lg~~PG~Efr~Ai~~A~~~ga~VvLgDR~i~iTl~R~~~~ls~~eklkl~~~ll~~~  245 (378)
                       |+...++.+++|++||+++++++|++||+||++||+.|++.|+||+++||||++||+|+|.+|++|||+|++++++.++
T Consensus        71 -Gk~~~~l~~~lLa~~Qrklg~~~Gv~PGsEmk~AIe~A~e~ga~V~lIDRdI~vTl~R~~~~~~~~EKlK~~~~L~~~~  149 (388)
T COG1916          71 -GKAFFLLAGLLLAYFQRKLGKELGVKPGSEMKAAIEAARELGAPVALIDRDIGVTLRRAWAKMPFWEKLKLISSLISGL  149 (388)
T ss_pred             -CchHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCEEEecccHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence             4445678899999999999999999999999999999999999999999999999999999999999999999999873


Q ss_pred             cCCCCCChhhhcCCCCchHHHHHHHHHHhhCCCcccchhhhccHHHHHHHHHhhhhCCCCeEEEEECCCchhhhHhhhhh
Q 017036          246 TSPSDMSLDNLKEPSPDDSTFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKAVNNSKKVVGVIGKGHMNGVIYALVS  325 (378)
Q Consensus       246 ~~~~~~s~eevE~~k~~D~l~~l~~el~~~~P~l~~~LidERD~yma~~L~~~~~~~~~~~vVaVVGagHl~GI~~~L~~  325 (378)
                      ..+ ..++.++++++..|+++.+|+|+++.+|++|++||||||+|||++|.+..  +...+|||||||||..||+++|++
T Consensus       150 ~~~-g~~e~ei~~l~~~D~~~al~~efr~~~P~~~~vLIDERd~ymA~nll~~~--~~~~~vvAVVGAGH~~GI~~~L~~  226 (388)
T COG1916         150 LFP-GQSEIEIDELKQEDVLSALMQEFRRFSPTVYKVLIDERDRYMARNLLEIV--SILNDVVAVVGAGHVRGIERYLKN  226 (388)
T ss_pred             ccC-CCchHHHHHHhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHH--cccCcEEEEEccccHHHHHHHHhc
Confidence            322 23788999999999999999999999999999999999999999999875  344569999999999999999988


Q ss_pred             cCCCCC-cccccCCCCCCCCCChhHHHHH-HHHHHHHHHHHHHHHHHH
Q 017036          326 DQGNLR-FRDLAGKRPSGDGSNGWIASLL-KSLVRDTVIGILLWALYE  371 (378)
Q Consensus       326 ~~~~~~-~~~l~~~~~~~~~~~~~~~k~~-~~~~~~~~ig~~~~~~~~  371 (378)
                      +++..+ ..||+++++    ..++..|++ .|++.++++++++-+||.
T Consensus       227 ~~~~p~~l~el~~~~~----~~~s~~k~~~g~~~~~l~~~~iv~~~~~  270 (388)
T COG1916         227 SDSAPPHLEELTELEK----KGSSLGKVLLGILLAALLIFLIVICFGL  270 (388)
T ss_pred             cccCCccHHHHhcccc----cccchhhhHHHHHHHHHHHHHHHHHHhc
Confidence            665554 688888876    345666666 888888888888777653

>KOG2860 consensus Uncharacterized conserved protein, contains TraB domain [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-53  Score=410.42  Aligned_cols=338  Identities=30%  Similarity=0.374  Sum_probs=287.1

Q ss_pred             CCCcccCCCCCCCCCCCCccccccCCCCCCchhhhhhhhhhHHHHHhhchhhhhhhccCceeeeccccCCCCCccccccc
Q 017036            8 TFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQFGPVPAWRSEFV   87 (378)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~   87 (378)
                      .||+|+++  .+++. .+ ++.++..|||+|++|..|..+++++++..+|+ .|++.+ +   .++..++|.++|+- +.
T Consensus        10 ~~~~~~~~--e~~~~-~~-~~~~~~g~~~~~~~r~di~~~~~~a~a~~~~e-~dla~~-~---~~~~~~~~d~~~~k-~l   79 (359)
T KOG2860|consen   10 DYELEQAP--EATED-AV-VNNPVCGGYHFGRKRADIFVPNANAVAVLKWE-TDLAIP-P---RNPVLSDSDEEWKK-AI   79 (359)
T ss_pred             cccccCCh--Hhhhh-hh-ccCcccCCcccchhhhhccchhhhhhhccCCc-hhcccC-C---CCCcccCCcHHHHH-hh
Confidence            37888776  55555 33 67889999999999999999999999999999 999977 4   67778889999998 66


Q ss_pred             CCceEEEEeecCCChhhHHHHHHHHHHcCCCeEEEeeccchhccccCCCCCCChhhhhhhhccccCCccccccccccccc
Q 017036           88 EPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLG  167 (378)
Q Consensus        88 ~~~~VyLVGTaHvS~~Sa~~V~~vI~~vkPD~V~VELc~~R~~~L~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~si~~g  167 (378)
                      .+++||||||+|+|++|+++|..+|+.+|||.|+||||++|..++..++.     .+.++.-.+.|.+|.+...++.+.+
T Consensus        80 ~~s~i~lVgTah~S~Es~~~v~~virtv~pd~V~vElCrsr~sIis~~ep-----~l~se~evl~g~~f~~~~~~~~~~g  154 (359)
T KOG2860|consen   80 LDSTIYLVGTAHFSKESQEDVSNVIRAVQPDFVMVELCRSRISIISADEP-----QLLSEAEVLNGAKFRGIFEEAGKIG  154 (359)
T ss_pred             ccceeEEEEeeecCccccccHHHHhhccCcceeehhhccchhhcccccCh-----hhhccCcccCCcceeeeeccccccC
Confidence            78999999999999999999999999999999999999999888765543     2333344456888999888888888


Q ss_pred             chhHHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHH-hCCeEeecCchhHHHHHHHHccCChHHHHHHHHHHHHhcc
Q 017036          168 GQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEE-VGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGIT  246 (378)
Q Consensus       168 g~~~l~~~llL~~~q~~l~~~lg~~PG~Efr~Ai~~A~~-~ga~VvLgDR~i~iTl~R~~~~ls~~eklkl~~~ll~~~~  246 (378)
                      |...+    ++..++.+..+++++.||+||+.|.+++-+ .||.++||||||++||+|+|++|++|++.++++++.... 
T Consensus       155 G~~~L----~lrsv~a~~~~dLdmaa~gefr~a~~efs~~~g~~v~lgDrpieitLqRa~~eLs~~~a~~lv~~vt~s~-  229 (359)
T KOG2860|consen  155 GIVFL----LLRSVSAKDLGDLDMAAGGEFRRASREFSTLMGCLVVLGDRPIEITLQRALSELSSWQAVVLVGHVTFSK-  229 (359)
T ss_pred             ceEeh----hhhhhhhhhccccccccchhHHHHhhhhccCCCceEEecCCcceeeHHHHHHhcchhheeeEEEEEEEee-
Confidence            88654    566677778888999999999999998854 599999999999999999999999999999888764322 


Q ss_pred             CCCCCChhhhcCCCCchHHHHHHHHHHhhCCCcccchhhhccHHHHHHHHHhhhh--C-----CCCeEEEEECCCchhhh
Q 017036          247 SPSDMSLDNLKEPSPDDSTFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKAV--N-----NSKKVVGVIGKGHMNGV  319 (378)
Q Consensus       247 ~~~~~s~eevE~~k~~D~l~~l~~el~~~~P~l~~~LidERD~yma~~L~~~~~~--~-----~~~~vVaVVGagHl~GI  319 (378)
                       ++.++.+++|.|++.|.+++++.+|...+|.+..+|+.|||.||++.|+.+..+  .     .+-.+|+|||.||.+||
T Consensus       230 -~~s~~t~eve~c~q~~Lveql~~~~a~~vp~~~lvlv~eRd~yl~~slelif~v~~~~gq~~~~~mvvvVvgi~~~sG~  308 (359)
T KOG2860|consen  230 -KNSIQTEEVENCKQTDLVEQLTIEMANFVPALSLVLVQERDLYLCHSLELIFTVWLRGGQQILPYMVVVVVGIGHVSGI  308 (359)
T ss_pred             -ccccchhhhhhhhHHhHHHHHHHHHHhhHHHHHHHHHHHHHhhhccchhheeeecccCCccccceEEEEEEEEEecchh
Confidence             345667899999999999999999999999999999999999999999876432  1     23579999999999999


Q ss_pred             HhhhhhcCCCCCcccccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017036          320 IYALVSDQGNLRFRDLAGKRPSGDGSNGWIASLLKSLVRDTVIGILLWALYEQVKGT  376 (378)
Q Consensus       320 ~~~L~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~~~~~~~~~ig~~~~~~~~~~~~~  376 (378)
                      -..|+.    +++..++++|     +++|..|++|+.+++++||+ +|+.||..+..
T Consensus       309 ~~~~~~----~~~d~~~~~~-----~~~~~qkv~k~~vr~~~igl-~~l~~r~~~~~  355 (359)
T KOG2860|consen  309 YLAWNT----IDFDPLMNIP-----PPSLGQKVFKTGVRIVVIGL-GYLAYRGGRAI  355 (359)
T ss_pred             hhhhcc----cCCCCcCCCC-----ChHHHHHHHhhchheeeeeh-HHHHHhhchhh
Confidence            998864    3444577776     78999999999999999994 49999976543

>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []

Probab=99.93  E-value=4.4e-26  Score=215.73  Aligned_cols=225  Identities=25%  Similarity=0.247  Sum_probs=165.1

Q ss_pred             CCceEEEEeecCCChhhHHHHHHHHHH--cCCCeEEEeeccch-------hccccCCCCCCChhhhhhhhccccCCcccc
Q 017036           88 EPENIWLIGTTHLSQDSAADVERVVRA--IKPDNVVVELCRSR-------AGIMYTSNGGENDQQLRSNMFSLSGTGFFG  158 (378)
Q Consensus        88 ~~~~VyLVGTaHvS~~Sa~~V~~vI~~--vkPD~V~VELc~~R-------~~~L~~~~~~~l~~~l~~~~~~~~~~~~~~  158 (378)
                      ++.++||+||+|+++.+...+...|++  .+||+|+||++..-       ...+..+++..+.+.+....+.. ...++.
T Consensus         8 ~g~~~yL~GT~H~~~~~~~~~~~~i~~a~~~sd~v~~E~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-l~~~~~   86 (259)
T PF01963_consen    8 NGKTVYLLGTIHVSPKSFYPLPDAIEEALKKSDVVVVELDMSDPEAQAQMQQAMMLPDGKTLKDLLSPEEYAR-LEELLA   86 (259)
T ss_pred             CCeEEEEEeccCCCchhhhhhHHHHHHHHhcCCEEEEecccccHHHHHHHHhhccCCCcccHHHhcCHHHHHH-HHHHHH
Confidence            478999999999999999999999999  99999999991111       11122222233333322221111 001111


Q ss_pred             cc---cccccccchhHHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhCCeEe-ecCchhHHHHHHHHccCChHHH
Q 017036          159 AV---GRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIV-LGDRPIEITLERAWNSLKWNEK  234 (378)
Q Consensus       159 ~~---~~si~~gg~~~l~~~llL~~~q~~l~~~lg~~PG~Efr~Ai~~A~~~ga~Vv-LgDR~i~iTl~R~~~~ls~~ek  234 (378)
                      ..   ...++..++|.+++.+....+++.+..+.|+.++.+++     |++.|++|. |+|++.|+++.   ++++.+++
T Consensus        87 ~~~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~gvd~~l~~~-----A~~~~~~v~~Le~~~~q~~~~---~~~~~~~q  158 (259)
T PF01963_consen   87 EYGLPLEMLRKLKPWAAAFLLSLSAFQKGYSPEYGVDPYLEQR-----AAEEGKPVVGLETREEQITLL---RSLPLDEQ  158 (259)
T ss_pred             hcCCCHHHHHcCCHHHHHHHHHHHHHhccccccccccHHHHHH-----HHHhCCCcccccCHHHHHHHH---hcCCHHHH
Confidence            11   14566788899888888888988888888999998888     555666655 89999999955   56699999


Q ss_pred             HHHHHHHHHhccCCCCCChhhhcCCCCchHHHHHHHHHHh--hCCCcccchhhhccHHHHHHHHHhhhhCCCCeEEEEEC
Q 017036          235 LNLLINVIRGITSPSDMSLDNLKEPSPDDSTFQLYKKLSF--SCPSLLLPLIHERDKYLAWSLKRSKAVNNSKKVVGVIG  312 (378)
Q Consensus       235 lkl~~~ll~~~~~~~~~s~eevE~~k~~D~l~~l~~el~~--~~P~l~~~LidERD~yma~~L~~~~~~~~~~~vVaVVG  312 (378)
                      .+++..++..+........+.++.|+++|. +.+++.+.+  .+|.+++.|+++||++|+.+|.++.  +..+++|+|||
T Consensus       159 ~~~L~~~l~~~~~~~~~~~~~~~~~~~gd~-~~l~~~~~~~~~~p~~~~~ll~~RN~~~~~~i~~~l--~~~~~~fvvVG  235 (259)
T PF01963_consen  159 VKMLRETLDDIEDGEKMLEQLIEAWKNGDL-DALMELMKEDESFPELYEVLLDERNRRWAEKIEELL--KEGGTVFVVVG  235 (259)
T ss_pred             HHHHHHHHhccccchHHHHHHHHHHHccCH-HHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHH--hcCCCEEEEEc
Confidence            999988886654333334456666888886 778888887  8999999999999999999999875  34579999999


Q ss_pred             CCchhhhHhhhh
Q 017036          313 KGHMNGVIYALV  324 (378)
Q Consensus       313 agHl~GI~~~L~  324 (378)
                      |||+.|....+.
T Consensus       236 a~HL~G~~gvl~  247 (259)
T PF01963_consen  236 AGHLPGEDGVLD  247 (259)
T ss_pred             chhccchhhHHH
Confidence            999998777653

Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.

>COG3735 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.44  E-value=2.1e-13  Score=132.17  Aligned_cols=229  Identities=15%  Similarity=0.137  Sum_probs=135.4

Q ss_pred             cccccccCCceEEEEeecCCChhh----HHHHHHHHHHcCCCeEEEeeccc--------h--hccccCCCCCCChhhhhh
Q 017036           81 AWRSEFVEPENIWLIGTTHLSQDS----AADVERVVRAIKPDNVVVELCRS--------R--AGIMYTSNGGENDQQLRS  146 (378)
Q Consensus        81 ~~~~~~~~~~~VyLVGTaHvS~~S----a~~V~~vI~~vkPD~V~VELc~~--------R--~~~L~~~~~~~l~~~l~~  146 (378)
                      .|..+--.++.+||+||.|++..-    ...+.++++.  -+.++||+|..        +  -......+..++.+.+++
T Consensus        33 ~~~i~~~G~s~~yL~GTiHvg~~~~~~lp~~~~~a~~~--A~tLivE~d~~~~~~~a~i~~~~~l~~~~~~~~l~~~Ls~  110 (299)
T COG3735          33 FWKIEKPGNSPLYLLGTIHVGSPRVLPLPDKLLKALDQ--ADTLIVEADDIVKKNTAVILKQPMLTGFTDGENLEDRLSP  110 (299)
T ss_pred             ceeeecCCCCceEEeeeeecCCCccccCCHHHHHHHhh--cCceEEEeccccccchHHHhcccccccCCCCcchhhhcCH
Confidence            666666566779999999998765    5667777776  99999999951        1  111222333344443333


Q ss_pred             hhccccCCccc---ccccccccccchhHHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhCCeEeecCc-hhHHHH
Q 017036          147 NMFSLSGTGFF---GAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDR-PIEITL  222 (378)
Q Consensus       147 ~~~~~~~~~~~---~~~~~si~~gg~~~l~~~llL~~~q~~l~~~lg~~PG~Efr~Ai~~A~~~ga~VvLgDR-~i~iTl  222 (378)
                      .-+.. .....   |..-..++...+|.+.+.+.+..+++. +  +.-..|-|.. -.+.|++.|.||+--+- ..|+. 
T Consensus       111 e~~~~-le~~~~~lGi~~~~~~~~~pW~la~~L~~~~~~~~-~--~~~~~giD~~-L~q~A~~~~k~I~gLEt~~~Ql~-  184 (299)
T COG3735         111 EQLAR-LEMILQELGIPLQALSKMPPWQLASVLAATQCEKA-G--LRGEYGIDYQ-LLQAAKAQNKPILGLETAEEQLA-  184 (299)
T ss_pred             HHHHH-HHHHHHHcCCCHHHHhcCCcHHHHHHHHHHHHHHc-C--cCcccchhHH-HHHHHHHcCCCccchhhHHHHHH-
Confidence            11110 00001   111245677788887777666666543 1  2334466655 56789999999887544 44544 


Q ss_pred             HHHHccCChHHHHHHHHHHHHhccCCCCCChhhhcCCCCch--HHHHHHH---HHHhhCCCcccchhhhccHHHHHHHHH
Q 017036          223 ERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKEPSPDD--STFQLYK---KLSFSCPSLLLPLIHERDKYLAWSLKR  297 (378)
Q Consensus       223 ~R~~~~ls~~eklkl~~~ll~~~~~~~~~s~eevE~~k~~D--~l~~l~~---el~~~~P~l~~~LidERD~yma~~L~~  297 (378)
                        +++.++...-++++..++..--+..+.-+-.+.-+.+.|  ++...+.   .+...++.++++|+.+||..|+.+ +.
T Consensus       185 --~l~~LP~d~~i~~L~~tl~~~~~~~d~l~tmi~~~l~gD~~~~~~~~~~~~~~~~~~~~~~~~li~~RN~~wad~-~~  261 (299)
T COG3735         185 --ALASLPLDFGIELLIDTLALGDTNADLLETMIDLWLNGDVGMFMPNLQAILPNKTFYADLYDVLITQRNRAWADK-KT  261 (299)
T ss_pred             --HHHcCChHHHHHHHHHHHHccccHHHHHHHHHHHHHcCCcchhhHHHhhhCccccchHHHHHHHHHHHHHHHHHh-hc
Confidence              788888666666666554310000001111122233333  1222221   222456778999999999999997 22


Q ss_pred             hhhhCCCCeEEEEECCCchhhhHhh
Q 017036          298 SKAVNNSKKVVGVIGKGHMNGVIYA  322 (378)
Q Consensus       298 ~~~~~~~~~vVaVVGagHl~GI~~~  322 (378)
                      ..  -.+++.|++|||||+.|-+..
T Consensus       262 ~~--l~~G~~fvaVGAlHL~G~e~L  284 (299)
T COG3735         262 PL--LQGGRYFVAVGALHLPGPEGL  284 (299)
T ss_pred             cc--cCCCCEEEEeccccccCcccH
Confidence            21  268999999999999996543

>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family

Probab=95.90  E-value=0.039  Score=51.92  Aligned_cols=29  Identities=28%  Similarity=0.406  Sum_probs=22.9

Q ss_pred             ccHHHHHHHHHhhhhCCCCeEEEEECCCchh
Q 017036          287 RDKYLAWSLKRSKAVNNSKKVVGVIGKGHMN  317 (378)
Q Consensus       287 RD~yma~~L~~~~~~~~~~~vVaVVGagHl~  317 (378)
                      ||..||.+|.+..  .++.++|+|+|.||+.
T Consensus       174 ~D~~MA~~i~~~~--~~~~~vv~i~G~gH~~  202 (213)
T PF04187_consen  174 WDATMAESIAAAL--HPGRPVVVIAGNGHVR  202 (213)
T ss_dssp             HHHHHHHHHHH-S-----SEEEEEEEHHHH-
T ss_pred             HHHHHHHHHHHHH--hccCeEEEEeCcchhc
Confidence            9999999998875  4589999999999985

; PDB: 2G5G_X.

>KOG2860 consensus Uncharacterized conserved protein, contains TraB domain [Signal transduction mechanisms]

Probab=94.16  E-value=0.0055  Score=60.77  Aligned_cols=105  Identities=17%  Similarity=0.164  Sum_probs=79.8

Q ss_pred             hhhhccCCCCChHHHHHHHHHHHHhCCeEeecCchhHHHHHHHHccCChHHHHHHHHHHHHhccCCCCCChhhhcCCCCc
Q 017036          183 SKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKEPSPD  262 (378)
Q Consensus       183 ~~l~~~lg~~PG~Efr~Ai~~A~~~ga~VvLgDR~i~iTl~R~~~~ls~~eklkl~~~ll~~~~~~~~~s~eevE~~k~~  262 (378)
                      ..+.++...-+|.+|+.+++.|.+.|-.+.|+||-++.-.-+-.                                    
T Consensus       129 p~l~se~evl~g~~f~~~~~~~~~~gG~~~L~lrsv~a~~~~dL------------------------------------  172 (359)
T KOG2860|consen  129 PQLLSEAEVLNGAKFRGIFEEAGKIGGIVFLLLRSVSAKDLGDL------------------------------------  172 (359)
T ss_pred             hhhhccCcccCCcceeeeeccccccCceEehhhhhhhhhhcccc------------------------------------
Confidence            44566677889999999999999999999999997764321111                                    


Q ss_pred             hHHH-HHHHHHHhhCCCcccchhhhccHHHHHHHHHhhhhCCCCeEEEEECCCchhhhHhhhhh
Q 017036          263 DSTF-QLYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKAVNNSKKVVGVIGKGHMNGVIYALVS  325 (378)
Q Consensus       263 D~l~-~l~~el~~~~P~l~~~LidERD~yma~~L~~~~~~~~~~~vVaVVGagHl~GI~~~L~~  325 (378)
                      |++. .-+..+..+|+++...++++||++|.-+|+++.+  .-.-.+++++-+|+.++.+.+..
T Consensus       173 dmaa~gefr~a~~efs~~~g~~v~lgDrpieitLqRa~~--eLs~~~a~~lv~~vt~s~~~s~~  234 (359)
T KOG2860|consen  173 DMAAGGEFRRASREFSTLMGCLVVLGDRPIEITLQRALS--ELSSWQAVVLVGHVTFSKKNSIQ  234 (359)
T ss_pred             ccccchhHHHHhhhhccCCCceEEecCCcceeeHHHHHH--hcchhheeeEEEEEEEeeccccc
Confidence            1111 1134556788999999999999999999998863  56777888888999999877643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	378
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 55/376 (14%), Positives = 103/376 (27%), Gaps = 114/376 (30%)

Query: 60  LNLA----DDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAI 115
           LNL      +  L ++QK  +   P W S      NI       L   S     R +   
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI------KLRIHSIQAELRRLLKS 240

Query: 116 KP--------DNV----VVEL----CRSRAGIMYTSN--------GGENDQQLRSNMFSL 151
           KP         NV            C+    I+ T+                +  +  S+
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCK----ILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 152 SGT-----GFFG-AVGRSI-DLGGQTALALRLLLALFSSKISSDVNR------PFGDEFR 198
           + T           +     DL  +        L++ +  I   +           D+  
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 199 AARKVA------EEVGAQ-----IVLGDRPI-EITLERAWNSLKWNEK---LNLLINVIR 243
              + +       E         +      I  I L   W  +  ++    +N L     
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK--- 413

Query: 244 GITSPSDMSLDNLKEPSPDDSTFQLYK-KLSFSCPSLLLPLIHER--DKYLAWSLKRSKA 300
                   SL  +++  P +ST  +    L           +H    D Y   ++ ++  
Sbjct: 414 -------YSL--VEK-QPKESTISIPSIYLELKVKLENEYALHRSIVDHY---NIPKTFD 460

Query: 301 VNNSKKVVGVIGKGHMNGVIYALVS------DQG-----------NLRFRDLAGK-RPSG 342
            ++       +   +++   Y+ +       +             + RF  L  K R   
Sbjct: 461 SDD-------LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF--LEQKIRHDS 511

Query: 343 DGSN--GWIASLLKSL 356
              N  G I + L+ L
Sbjct: 512 TAWNASGSILNTLQQL 527

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 60/423 (14%), Positives = 109/423 (25%), Gaps = 150/423 (35%)

Query: 12  FSANPNLLSTKPIKP-FKVSIKPPPQDFDFRTEILSDSQATIAKA-CPELLNLADD--GT 67
           F    +    K I   F+ +      +FD + ++    ++ ++K     ++   D   GT
Sbjct: 9   FETGEHQYQYKDILSVFEDAFV---DNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 68  LVLI------QKRQFGPVPAWRSEFVE----PENIWLIGTTHL-SQDSAADVE------- 109
           L L       Q+           +FVE        +L+       +  +           
Sbjct: 65  LRLFWTLLSKQEEMV-------QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 110 ---RVVRAIKPDNV-----VVELCRSRAGIMYTSNGGENDQQLRSNMF-SLSGTGFFG-- 158
                 +     NV      ++L   R  +           +LR      + G    G  
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKL---RQAL----------LELRPAKNVLIDGVLGSGKT 164

Query: 159 ----AVGRS-------------IDLG--GQTALALRLLLAL-------FSSKISSDVNRP 192
                V  S             ++L         L +L  L       ++S+     N  
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 193 FGDEFRAAR-----------------------KVAE--EVGAQIVL------------GD 215
                  A                        K      +  +I+L              
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 216 RPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKEPSPDDSTFQLYKKLSFS 275
               I+L+    +L  +E  +LL+  +       D    +L       +           
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYL-------DCRPQDLPREVLTTN----------- 326

Query: 276 CPSLLLPLIHE--RDKYLAWSLKRSKAVNNSKKVVGVIGKGHMNGVIYALVSDQGNLRFR 333
            P   L +I E  RD    W     K VN   K+  +I        +  L   +    F 
Sbjct: 327 -P-RRLSIIAESIRDGLATW--DNWKHVNC-DKLTTIIESS-----LNVLEPAEYRKMFD 376

Query: 334 DLA 336
            L+
Sbjct: 377 RLS 379

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	378
2g5g_X	268	Putative lipoprotein; cofacial heme, tyrosine liga	93.59

>2g5g_X Putative lipoprotein; cofacial heme, tyrosine ligand, dimer, transport protein; HET: HEM; 1.90A {Campylobacter jejuni subsp} SCOP: c.150.1.1

Probab=93.59  E-value=0.73  Score=43.68  Aligned_cols=34  Identities=24%  Similarity=0.328  Sum_probs=29.7

Q ss_pred             ccHHHHHHHHHhhhhCCCCeEEEEECCCchh---hhHhhhhh
Q 017036          287 RDKYLAWSLKRSKAVNNSKKVVGVIGKGHMN---GVIYALVS  325 (378)
Q Consensus       287 RD~yma~~L~~~~~~~~~~~vVaVVGagHl~---GI~~~L~~  325 (378)
                      ||..||++|.+     .++++|+|.|.||+.   ||-.+|..
T Consensus       200 rD~~MA~~i~~-----~~~~vv~iaG~gH~~~~~Gvp~~l~~  236 (268)
T 2g5g_X          200 KDRRMADVLVH-----HVNKVLLLAGSYHTSKKIGIPLHIQD  236 (268)
T ss_dssp             HHHHHHHHHHH-----CSSEEEEEEEHHHHCTTTSHHHHHHH
T ss_pred             HHHHHHHHHHh-----CCCeEEEEeCcchhcCCCcHHHHHHH
Confidence            99999999975     357999999999998   88888865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	378
d2g5gx1	255	Heme transport protein ChaN {Campylobacter jejuni	94.82

>d2g5gx1 c.150.1.1 (X:9-263) Heme transport protein ChaN {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: EreA/ChaN-like
superfamily: EreA/ChaN-like
family: ChaN-like
domain: Heme transport protein ChaN
species: Campylobacter jejuni [TaxId: 197]

Probab=94.82  E-value=0.29  Score=43.71  Aligned_cols=102  Identities=14%  Similarity=0.070  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHhCCeEeecCchhHHHHHHHHcc---------CChHHHHHHHHHHHHhccCCCCCChhhhcCCCCchHHHH
Q 017036          197 FRAARKVAEEVGAQIVLGDRPIEITLERAWNS---------LKWNEKLNLLINVIRGITSPSDMSLDNLKEPSPDDSTFQ  267 (378)
Q Consensus       197 fr~Ai~~A~~~ga~VvLgDR~i~iTl~R~~~~---------ls~~eklkl~~~ll~~~~~~~~~s~eevE~~k~~D~l~~  267 (378)
                      ++--++.|++.|+||+-+.-|-+++ +++.+.         ++...+-.+...+........         ..+.++++.
T Consensus       112 Y~pl~~~A~~~~~pvia~N~pr~~~-~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~h~~~~---------~~~~~~~~~  181 (255)
T d2g5gx1         112 YEQFVNVVFYSKSKILGANLSRSEI-TSIYNGAQPLKGYVSTTNEVKKQLFDIISLSHKLNP---------EENKELLDK  181 (255)
T ss_dssp             THHHHHHHHTSSCCEEEEECCHHHH-HHHHTTCCCCCCSSSSCHHHHHHHHHHHHHHHTCCT---------TTTHHHHHH
T ss_pred             HHHHHHHHHHCCCCEEecCCCHHHH-HHHHhCCCCccccccCCHHHHHHHHHHHHHhccccc---------hhhHHHHHH
Confidence            4456778999999999877776654 333322         222222222222221111000         011123333


Q ss_pred             HHHHHHhhCCCcccchhhhccHHHHHHHHHhhhhCCCCeEEEEECCCch---hhhHhhhhh
Q 017036          268 LYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKAVNNSKKVVGVIGKGHM---NGVIYALVS  325 (378)
Q Consensus       268 l~~el~~~~P~l~~~LidERD~yma~~L~~~~~~~~~~~vVaVVGagHl---~GI~~~L~~  325 (378)
                      |++-         +.+   ||..||++|.+     ..+++|++.|.||+   -||-..|..
T Consensus       182 m~~a---------Q~~---~Da~MA~~i~~-----~~~~vvvIaG~gH~~~~~GiP~~L~~  225 (255)
T d2g5gx1         182 LVEI---------QQF---KDRRMADVLVH-----HVNKVLLLAGSYHTSKKIGIPLHIQD  225 (255)
T ss_dssp             HHHH---------HHH---HHHHHHHHHHH-----CSSEEEEEEEHHHHCTTTSHHHHHHH
T ss_pred             HHHH---------HHH---HHHHHHHHHHh-----cCCeEEEEcCcchhcCCccHHHHHHh
Confidence            3221         334   99999999965     35789999999999   578888865