Citrus Sinensis ID: 017053
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 378 | ||||||
| 255582876 | 508 | Ribulose-1,5 bisphosphate carboxylase/ox | 0.886 | 0.659 | 0.856 | 1e-168 | |
| 224129218 | 503 | predicted protein [Populus trichocarpa] | 0.886 | 0.666 | 0.847 | 1e-166 | |
| 356547583 | 499 | PREDICTED: ribulose-1,5 bisphosphate car | 0.886 | 0.671 | 0.832 | 1e-164 | |
| 357462493 | 497 | SET domain-containing protein [Medicago | 0.886 | 0.674 | 0.808 | 1e-162 | |
| 357469947 | 494 | SET domain-containing protein [Medicago | 0.886 | 0.678 | 0.808 | 1e-162 | |
| 225447500 | 497 | PREDICTED: ribulose-1,5 bisphosphate car | 0.886 | 0.674 | 0.850 | 1e-158 | |
| 449453618 | 497 | PREDICTED: ribulose-1,5 bisphosphate car | 0.886 | 0.674 | 0.823 | 1e-157 | |
| 15231493 | 504 | rubisco methyltransferase-like protein [ | 0.886 | 0.664 | 0.805 | 1e-150 | |
| 297829320 | 504 | SET domain-containing protein [Arabidops | 0.886 | 0.664 | 0.808 | 1e-150 | |
| 21537309 | 504 | putative ribulose-1,5-bisphosphate carbo | 0.886 | 0.664 | 0.802 | 1e-150 |
| >gi|255582876|ref|XP_002532210.1| Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis] gi|223528106|gb|EEF30179.1| Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 287/335 (85%), Positives = 310/335 (92%)
Query: 44 LSVLPPTASLCHFRTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPE 103
+S LP + TRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPE
Sbjct: 174 ISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPE 233
Query: 104 EVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFT 163
EVFN+ETFKWSFGILFSRLVRLPSMDG+VALVPWADMLNHSCEVETFLDYDKSSQGVVFT
Sbjct: 234 EVFNLETFKWSFGILFSRLVRLPSMDGKVALVPWADMLNHSCEVETFLDYDKSSQGVVFT 293
Query: 164 TDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEA 223
TDRQY+PGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVEL LSLKKSDK YKEKLEA
Sbjct: 294 TDRQYEPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELSLSLKKSDKSYKEKLEA 353
Query: 224 LRKYGLSASECFPIQITGWPLELMAYAYLVVSPPSMKGKFEEMAAAASNKMTSKKDIKCP 283
L+K+G SAS+CFP+++TGWP+EL+AYAYL VSPPSM KFEE+AAAASNK T KKD+ P
Sbjct: 354 LKKHGFSASQCFPVRVTGWPVELLAYAYLAVSPPSMSSKFEELAAAASNKTTIKKDVGFP 413
Query: 284 EIDEQALQFILDSCESSISKYSRFLQASGSMDLDTTSPKQLNRRVFLKQLAVDLCTSERR 343
EI+EQALQFILDSCESSISKY++FLQASGSMDLD TSPKQLNRR+FLKQLAVDLC SE+R
Sbjct: 414 EIEEQALQFILDSCESSISKYTKFLQASGSMDLDVTSPKQLNRRLFLKQLAVDLCNSEQR 473
Query: 344 ILFRAQYILRRRLRDIRSGELRALRLFDNFVNLFK 378
ILFRAQ +LRRRLRDIRSGELRAL++FD F N FK
Sbjct: 474 ILFRAQNVLRRRLRDIRSGELRALKIFDGFRNWFK 508
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129218|ref|XP_002320530.1| predicted protein [Populus trichocarpa] gi|222861303|gb|EEE98845.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356547583|ref|XP_003542190.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357462493|ref|XP_003601528.1| SET domain-containing protein [Medicago truncatula] gi|355490576|gb|AES71779.1| SET domain-containing protein [Medicago truncatula] gi|388500078|gb|AFK38105.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|357469947|ref|XP_003605258.1| SET domain-containing protein [Medicago truncatula] gi|355506313|gb|AES87455.1| SET domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|225447500|ref|XP_002267469.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Vitis vinifera] gi|296085051|emb|CBI28466.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|449453618|ref|XP_004144553.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus] gi|449511789|ref|XP_004164054.1| PREDICTED: LOW QUALITY PROTEIN: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|15231493|ref|NP_187424.1| rubisco methyltransferase-like protein [Arabidopsis thaliana] gi|6466950|gb|AAF13085.1|AC009176_12 putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Arabidopsis thaliana] gi|6648179|gb|AAF21177.1|AC013483_1 putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Arabidopsis thaliana] gi|15028205|gb|AAK76599.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Arabidopsis thaliana] gi|19310671|gb|AAL85066.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Arabidopsis thaliana] gi|332641064|gb|AEE74585.1| rubisco methyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297829320|ref|XP_002882542.1| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297328382|gb|EFH58801.1| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|21537309|gb|AAM61650.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 378 | ||||||
| TAIR|locus:2077342 | 504 | AT3G07670 [Arabidopsis thalian | 0.886 | 0.664 | 0.805 | 2.6e-143 | |
| UNIPROTKB|E2RBS6 | 588 | SETD3 "Histone-lysine N-methyl | 0.494 | 0.318 | 0.290 | 3.5e-14 | |
| UNIPROTKB|B2KI88 | 594 | SETD3 "Histone-lysine N-methyl | 0.494 | 0.314 | 0.289 | 3.5e-14 | |
| ZFIN|ZDB-GENE-030131-9137 | 597 | setd3 "SET domain containing 3 | 0.539 | 0.341 | 0.282 | 3.6e-14 | |
| TAIR|locus:2014764 | 482 | LSMT-L "lysine methyltransfera | 0.809 | 0.634 | 0.258 | 6.5e-14 | |
| UNIPROTKB|F6R2J7 | 594 | SETD3 "Uncharacterized protein | 0.494 | 0.314 | 0.284 | 7.8e-14 | |
| UNIPROTKB|Q86TU7 | 594 | SETD3 "Histone-lysine N-methyl | 0.494 | 0.314 | 0.284 | 1e-13 | |
| UNIPROTKB|A9X1D0 | 595 | SETD3 "Histone-lysine N-methyl | 0.494 | 0.314 | 0.284 | 1e-13 | |
| UNIPROTKB|B0VX69 | 595 | SETD3 "Histone-lysine N-methyl | 0.494 | 0.314 | 0.284 | 1e-13 | |
| UNIPROTKB|B1MTJ4 | 595 | SETD3 "Histone-lysine N-methyl | 0.494 | 0.314 | 0.284 | 1e-13 |
| TAIR|locus:2077342 AT3G07670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1401 (498.2 bits), Expect = 2.6e-143, P = 2.6e-143
Identities = 270/335 (80%), Positives = 297/335 (88%)
Query: 44 LSVLPPTASLCHFRTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPE 103
+S LP + TR ELD YLEASQIRERAIERITNV+GTY DLR RIFSK+P LFP+
Sbjct: 170 ISALPRQPYSLLYWTRTELDMYLEASQIRERAIERITNVVGTYEDLRSRIFSKHPQLFPK 229
Query: 104 EVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFT 163
EVFN ETFKWSFGILFSRLVRLPSMDGR ALVPWADMLNH+CEVETFLDYDKSS+GVVFT
Sbjct: 230 EVFNDETFKWSFGILFSRLVRLPSMDGRFALVPWADMLNHNCEVETFLDYDKSSKGVVFT 289
Query: 164 TDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEA 223
TDR YQPGEQVFISYG KSNGELLLSYGFVPREGTNPSDSVEL LSL+K+DKCY+EKL+A
Sbjct: 290 TDRPYQPGEQVFISYGNKSNGELLLSYGFVPREGTNPSDSVELALSLRKNDKCYEEKLDA 349
Query: 224 LRKYGLSASECFPIQITGWPLELMAYAYLVVSPPSMKGKFEEMAAAASNKMTSKKDIKCP 283
L+K+GLS +CFP++ITGWP+ELMAYAYLVVSPP M+ FEEMA AASNK ++K D+K P
Sbjct: 350 LKKHGLSTPQCFPVRITGWPMELMAYAYLVVSPPDMRNNFEEMAKAASNKTSTKNDLKYP 409
Query: 284 EIDEQALQFILDSCESSISKYSRFLQASGSMDLDTTSPKQLNRRVFLKQLAVDLCTSERR 343
EI+E ALQFILDSCE+SISKYSRFL+ SGSMDLD TSPKQLNR+ FLKQLAVDL TSERR
Sbjct: 410 EIEEDALQFILDSCETSISKYSRFLKESGSMDLDITSPKQLNRKAFLKQLAVDLSTSERR 469
Query: 344 ILFRAQYILRRRLRDIRSGELRALRLFDNFVNLFK 378
IL+RAQYILRRRLRDIRSGEL+ALRLF N FK
Sbjct: 470 ILYRAQYILRRRLRDIRSGELKALRLFSGLRNFFK 504
|
|
| UNIPROTKB|E2RBS6 SETD3 "Histone-lysine N-methyltransferase setd3" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B2KI88 SETD3 "Histone-lysine N-methyltransferase setd3" [Rhinolophus ferrumequinum (taxid:59479)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-9137 setd3 "SET domain containing 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2014764 LSMT-L "lysine methyltransferase (LSMT)-like" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F6R2J7 SETD3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q86TU7 SETD3 "Histone-lysine N-methyltransferase setd3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A9X1D0 SETD3 "Histone-lysine N-methyltransferase setd3" [Papio anubis (taxid:9555)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B0VX69 SETD3 "Histone-lysine N-methyltransferase setd3" [Callithrix jacchus (taxid:9483)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B1MTJ4 SETD3 "Histone-lysine N-methyltransferase setd3" [Callicebus moloch (taxid:9523)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| eugene3.00141165 | hypothetical protein (504 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 378 | |||
| pfam09273 | 128 | pfam09273, Rubis-subs-bind, Rubisco LSMT substrate | 6e-14 | |
| pfam00856 | 113 | pfam00856, SET, SET domain | 6e-10 | |
| smart00317 | 124 | smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest | 5e-08 |
| >gnl|CDD|220161 pfam09273, Rubis-subs-bind, Rubisco LSMT substrate-binding | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 6e-14
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 210 LKKSDKCYKEKLEALRKYGLSASECFPIQITGW-PLELMAYAYLVVSPPSMKGKFEEMAA 268
L SD Y++KL+ L + GL + F + I G EL+AY L+ ++ +
Sbjct: 1 LSPSDPLYEDKLQLLERNGLLENGNFTLGIDGPPSWELLAYLRLLCLSDEELTAWKSVLL 60
Query: 269 AASNKMTSKKDIKCPEIDEQALQFILDSCESSISKYSRFLQASGSMDLDTTSPKQLNRRV 328
A PE +E+ALQF+ C+ +S+Y L+ L + + R
Sbjct: 61 GAVIGHKE--APLSPENEEKALQFLEKLCKLLLSEYPTTLEED-EALLKKGNLSEQLR-- 115
Query: 329 FLKQLAVDLCTSERRIL 345
LAV L E+RIL
Sbjct: 116 ----LAVRLRLGEKRIL 128
|
Members of this family adopt a multihelical structure, with an irregular array of long and short alpha-helices. They allow binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex. Length = 128 |
| >gnl|CDD|216155 pfam00856, SET, SET domain | Back alignment and domain information |
|---|
| >gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 378 | |||
| KOG1337 | 472 | consensus N-methyltransferase [General function pr | 100.0 | |
| KOG1338 | 466 | consensus Uncharacterized conserved protein [Funct | 99.93 | |
| PF09273 | 128 | Rubis-subs-bind: Rubisco LSMT substrate-binding; I | 99.8 | |
| PF00856 | 162 | SET: SET domain; InterPro: IPR001214 The SET domai | 99.25 | |
| smart00317 | 116 | SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) | 98.41 | |
| KOG2589 | 453 | consensus Histone tail methylase [Chromatin struct | 95.86 | |
| KOG1085 | 392 | consensus Predicted methyltransferase (contains a | 94.19 | |
| KOG4442 | 729 | consensus Clathrin coat binding protein/Huntingtin | 93.45 | |
| KOG1079 | 739 | consensus Transcriptional repressor EZH1 [Transcri | 91.99 | |
| KOG1080 | 1005 | consensus Histone H3 (Lys4) methyltransferase comp | 89.97 | |
| COG2940 | 480 | Proteins containing SET domain [General function p | 89.28 |
| >KOG1337 consensus N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=295.17 Aligned_cols=327 Identities=31% Similarity=0.434 Sum_probs=258.7
Q ss_pred HHHHHHHHHHHhh---cchHHHhhcCCCCCCCCCCCCHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 017053 25 ILVRMCLLRSLFL---YHRKGLLSVLPPTASLCHFRTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLF 101 (378)
Q Consensus 25 ~~l~~~Ll~e~~~---s~w~pYl~~LP~~~~~pl~w~~~el~~~L~gs~l~~~~~~~~~~~~~~~~~~~~~l~~~~p~~f 101 (378)
+.++.+|+++... +.|.||+..||..+++|++|...++. .|.++.....+..+++.++..+..+.+ +...+|..+
T Consensus 112 ~~l~~~l~~~~~~~~~s~w~~~i~~l~~~~~~p~~~~~~~v~-~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 189 (472)
T KOG1337|consen 112 IALALFLLLEWAHGEISKWKPYISTLPSQYNSPLLWSEDEVK-SLLSTPLFEIVASRRQNLVNKSAELLE-VLQSHPSLF 189 (472)
T ss_pred HHHHHHHHHhhhccccccchhhhhhchhhcCCccccCHHHHH-HhhcchhhHHHHHHHHHhhhhHHHHHH-HHHhccccc
Confidence 7899999999876 68999999999999999999999998 599999998888888777776666554 334455544
Q ss_pred C---cccccHHHHHHHHHhhhccceeccCC--------CCceeeeecccccCCCCCCcccEEeeCCCCeEEEEecCcCCC
Q 017053 102 P---EEVFNMETFKWSFGILFSRLVRLPSM--------DGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQP 170 (378)
Q Consensus 102 ~---~~~~t~e~f~wA~~~v~SRaf~~~~~--------~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~~a~~~i~~ 170 (378)
+ .+.++++.|.||+++|.||+|+.+.. .+..+|+|++||+||++.. ..+.|+..++.+.+++.++|++
T Consensus 190 ~~~~~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~-~~~~~~~~d~~~~l~~~~~v~~ 268 (472)
T KOG1337|consen 190 GSDLFDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEV-IKAGYNQEDEAVELVAERDVSA 268 (472)
T ss_pred cccccCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchh-ccccccCCCCcEEEEEeeeecC
Confidence 3 23489999999999999999987644 2367999999999999998 4557777777999999999999
Q ss_pred CceeEecCCCCChHHHHHhCCCccCCCCCCCCceeeccccCCCchhHHHHHHHHHHCCCCCCceeeeecCCCC-HHHHHH
Q 017053 171 GEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECFPIQITGWP-LELMAY 249 (378)
Q Consensus 171 Geei~i~YG~~~n~~lL~~YGFv~~~~~Np~D~v~l~~~l~~~d~~~~~k~~~L~~~gl~~~~~f~l~~~~~p-~~Ll~~ 249 (378)
|+||||+||+++|++||.+||||.+ +||+|.|.+.+.++..++....+...+..+++.....|.+...+.| .+++..
T Consensus 269 geevfi~YG~~~N~eLL~~YGFv~~--~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (472)
T KOG1337|consen 269 GEEVFINYGPKSNAELLLHYGFVEE--DNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSILLTGEPVSEMLLL 346 (472)
T ss_pred CCeEEEecCCCchHHHHHhcCCCCC--CCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEeecCCchhhhhhh
Confidence 9999999999999999999999988 9999999999999999999989999999999998888888877765 333444
Q ss_pred HHHHcCCchhh--hhHHHHH-HHHhcccCCCCCCCCchHHHHHHHHHHHH-HHHHHhhccchhhhcCCCCCCCCCccchh
Q 017053 250 AYLVVSPPSMK--GKFEEMA-AAASNKMTSKKDIKCPEIDEQALQFILDS-CESSISKYSRFLQASGSMDLDTTSPKQLN 325 (378)
Q Consensus 250 lRv~~~~~~e~--~~~~~l~-~~~~~~~~~~~~~~s~~nE~~~~~~L~~~-~~~~L~~y~tt~eeD~~~l~~~~~~~~~~ 325 (378)
.++..+..+.. +.+.... ..............+..+|...+..+.+. |...+..+.++++++...+.+. .++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~vl~~~----~l~ 422 (472)
T KOG1337|consen 347 FLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDESVLKDN----ILS 422 (472)
T ss_pred hhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhhhhccc----ccc
Confidence 44343333322 1111110 00111112234455578999999999999 8889999999998777766541 122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Q 017053 326 RRVFLKQLAVDLCTSERRILFRAQYILRRRLRDIRSGE 363 (378)
Q Consensus 326 ~~~~~~~~A~~~R~~EK~IL~~~~~~l~~~l~~l~~~~ 363 (378)
. +..++..++..+|+||.+++..+..+...+++..
T Consensus 423 ~---~~~~~~k~~~~~~~iL~~~~~~~~~~~~~l~s~~ 457 (472)
T KOG1337|consen 423 K---LLELLEKLRTLEKRILEKSLKLLRSRLKLLHSLE 457 (472)
T ss_pred h---hhhhhhhhhhhHHHHHHHHHHHHHHhhhhccccc
Confidence 2 3678999999999999999999998888888766
|
|
| >KOG1338 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices | Back alignment and domain information |
|---|
| >PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco | Back alignment and domain information |
|---|
| >smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain | Back alignment and domain information |
|---|
| >KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1079 consensus Transcriptional repressor EZH1 [Transcription] | Back alignment and domain information |
|---|
| >KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >COG2940 Proteins containing SET domain [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 378 | ||||
| 3smt_A | 497 | Crystal Structure Of Human Set Domain-Containing Pr | 3e-14 | ||
| 1mlv_A | 444 | Structure And Catalytic Mechanism Of A Set Domain P | 2e-11 | ||
| 2h21_A | 440 | Structure Of Rubisco Lsmt Bound To Adomet Length = | 2e-11 | ||
| 3qxy_A | 449 | Human Setd6 In Complex With Rela Lys310 Length = 44 | 8e-07 |
| >pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3 Length = 497 | Back alignment and structure |
|
| >pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein Methyltransferase Length = 444 | Back alignment and structure |
| >pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet Length = 440 | Back alignment and structure |
| >pdb|3QXY|A Chain A, Human Setd6 In Complex With Rela Lys310 Length = 449 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 378 | |||
| 3smt_A | 497 | Histone-lysine N-methyltransferase SETD3; histone | 2e-48 | |
| 2h21_A | 440 | Ribulose-1,5 bisphosphate carboxylase/oxygenase; S | 1e-46 | |
| 3qxy_A | 449 | N-lysine methyltransferase SETD6; epigenetics, pro | 3e-46 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 5e-04 |
| >3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Length = 497 | Back alignment and structure |
|---|
Score = 170 bits (431), Expect = 2e-48
Identities = 68/326 (20%), Positives = 128/326 (39%), Gaps = 20/326 (6%)
Query: 44 LSVLPPTASLCHFRTRAELDRYLEASQIRERAIERITNVIGTYNDLR--LRIFSKYPDLF 101
+ LP + E+ YL+++Q + N Y ++ L
Sbjct: 175 IQTLPSEYDTPLYFEEDEVR-YLQSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANKLP 233
Query: 102 PEEVFNMETFKWSFGILFSRLVRLPSMDG---RVALVPWADMLNHSCEVETFLDYDKSSQ 158
++ F E ++W+ + +R ++P+ DG +AL+P DM NH+ + T Y+
Sbjct: 234 LKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITT-GYNLEDD 292
Query: 159 GVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYK 218
+ ++ GEQ++I YG +SN E ++ GF N D V++ L + KSD+ Y
Sbjct: 293 RCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDN--NSHDRVKIKLGVSKSDRLYA 350
Query: 219 EKLEALRKYGLSASECFPIQITG--WPLELMAYAY-LVVSPPSMKGKFEEMAAAASNKMT 275
K E L + G+ S F + T +L+A+ ++ +K +A
Sbjct: 351 MKAEVLARAGIPTSSVFALHFTEPPISAQLLAFLRVFCMTEEELKEHLLGDSAIDRIFTL 410
Query: 276 SKKDIK-CPEIDEQALQFILDSCESSISKYSRFLQASGSMDLDTTSPKQLNRRVFLKQLA 334
+ + + + F+ D + Y ++ D L+ R ++A
Sbjct: 411 GNSEFPVSWDNEVKLWTFLEDRASLLLKTYKTTIE----EDKSVLKNHDLSVR---AKMA 463
Query: 335 VDLCTSERRILFRAQYILRRRLRDIR 360
+ L E+ IL +A R
Sbjct: 464 IKLRLGEKEILEKAVKSAAVNREYYR 489
|
| >2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Length = 440 | Back alignment and structure |
|---|
| >3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Length = 449 | Back alignment and structure |
|---|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 378 | |||
| 3smt_A | 497 | Histone-lysine N-methyltransferase SETD3; histone | 100.0 | |
| 3qxy_A | 449 | N-lysine methyltransferase SETD6; epigenetics, pro | 100.0 | |
| 2h21_A | 440 | Ribulose-1,5 bisphosphate carboxylase/oxygenase; S | 100.0 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.82 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.78 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.72 | |
| 1n3j_A | 119 | A612L, histone H3 lysine methyltransferase; beta b | 98.39 | |
| 3f9x_A | 166 | Histone-lysine N-methyltransferase SETD8; methyltr | 97.74 | |
| 3rq4_A | 247 | Histone-lysine N-methyltransferase SUV420H2; suppr | 97.66 | |
| 3s8p_A | 273 | Histone-lysine N-methyltransferase SUV420H1; SET d | 97.5 | |
| 2w5y_A | 192 | Histone-lysine N-methyltransferase HRX; transcript | 97.35 | |
| 3ope_A | 222 | Probable histone-lysine N-methyltransferase ASH1L; | 97.2 | |
| 2f69_A | 261 | Histone-lysine N-methyltransferase, H3 lysine-4 sp | 97.15 | |
| 3ooi_A | 232 | Histone-lysine N-methyltransferase, H3 lysine-36 l | 97.14 | |
| 3h6l_A | 278 | Histone-lysine N-methyltransferase SETD2; SET doma | 96.93 | |
| 1h3i_A | 293 | Histone H3 lysine 4 specific methyltransferase; 2. | 96.91 | |
| 3hna_A | 287 | Histone-lysine N-methyltransferase, H3 lysine-9 sp | 96.91 | |
| 2qpw_A | 149 | PR domain zinc finger protein 2; methyltransferase | 96.79 | |
| 3bo5_A | 290 | Histone-lysine N-methyltransferase setmar; SET dom | 96.76 | |
| 1ml9_A | 302 | Histone H3 methyltransferase DIM-5; adoMet-depende | 96.56 | |
| 2r3a_A | 300 | Histone-lysine N-methyltransferase SUV39H2; histon | 96.53 | |
| 1mvh_A | 299 | Cryptic LOCI regulator 4; lysine methyltransferase | 96.42 | |
| 3db5_A | 151 | PR domain zinc finger protein 4; methyltransferase | 93.53 | |
| 3ep0_A | 170 | PR domain zinc finger protein 12; PR domain-contai | 93.14 | |
| 3dal_A | 196 | PR domain zinc finger protein 1; methyltransferase | 91.63 | |
| 3ihx_A | 152 | PR domain zinc finger protein 10; PRDM10, methyltr | 88.49 | |
| 3ray_A | 237 | PR domain-containing protein 11; structural genomi | 82.92 |
| >3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-58 Score=470.08 Aligned_cols=324 Identities=22% Similarity=0.344 Sum_probs=272.6
Q ss_pred HHHHHHHHHHHHhh--cchHHHhhcCCCCCCCCCCCCHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 017053 24 SILVRMCLLRSLFL--YHRKGLLSVLPPTASLCHFRTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLF 101 (378)
Q Consensus 24 ~~~l~~~Ll~e~~~--s~w~pYl~~LP~~~~~pl~w~~~el~~~L~gs~l~~~~~~~~~~~~~~~~~~~~~l~~~~p~~f 101 (378)
+..|+++|++|+.. |+|+||+++||+.+++|++|+++|++ +|+||++...+.++.+.+.++|..+.. ++..+|+.+
T Consensus 153 ~~~Lal~Ll~E~~~~~S~w~pYl~~LP~~~~~pl~w~~eel~-~L~gt~l~~~v~~~~~~~~~~~~~~~~-~~~~~p~~~ 230 (497)
T 3smt_A 153 NIALAFHLLCERASPNSFWQPYIQTLPSEYDTPLYFEEDEVR-YLQSTQAIHDVFSQYKNTARQYAYFYK-VIQTHPHAN 230 (497)
T ss_dssp HHHHHHHHHHHHTCTTCTTHHHHTTSCSCCCSGGGCCHHHHH-TTSSSSHHHHHHHHHHHHHHHHHHHHH-HC----CCC
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHhCCCCCCCCCcCCHHHHh-hccCCcHHHHHHHHHHHHHHHHHHHHH-HHHhCcccc
Confidence 56799999999864 79999999999999999999999998 699999999998888888899988764 566777753
Q ss_pred --C-cccccHHHHHHHHHhhhccceeccCCCC---ceeeeecccccCCCCCCcccEEeeCCCCeEEEEecCcCCCCceeE
Q 017053 102 --P-EEVFNMETFKWSFGILFSRLVRLPSMDG---RVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVF 175 (378)
Q Consensus 102 --~-~~~~t~e~f~wA~~~v~SRaf~~~~~~~---~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~~a~~~i~~Geei~ 175 (378)
+ .+.+|+++|+||+++|+||+|.++..+| ..+|||++||+||++.++. ..|+.+++++++++.++|++|||||
T Consensus 231 ~~~~~~~~t~e~f~wA~~~v~SRa~~~~~~~g~~~~~~LvP~~Dm~NH~~~~~~-~~~~~~~~~~~~~a~~~i~~Geei~ 309 (497)
T 3smt_A 231 KLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLIT-TGYNLEDDRCECVALQDFRAGEQIY 309 (497)
T ss_dssp CSTTTTCCCHHHHHHHHHHHHHHCEEEECTTSSSEEEEECTTGGGCEECSCSEE-EEEETTTTEEEEEESSCBCTTCEEE
T ss_pred cCccccccCHHHHHHhhheEecccccccCcccccccceeechHHhhcCCCcccc-eeeeccCCeEEEEeCCccCCCCEEE
Confidence 2 3578999999999999999999986544 4699999999999998743 3566678899999999999999999
Q ss_pred ecCCCCChHHHHHhCCCccCCCCCCCCceeeccccCCCchhHHHHHHHHHHCCCCCCceeeeecC--CCCHHHHHHHHHH
Q 017053 176 ISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECFPIQIT--GWPLELMAYAYLV 253 (378)
Q Consensus 176 i~YG~~~n~~lL~~YGFv~~~~~Np~D~v~l~~~l~~~d~~~~~k~~~L~~~gl~~~~~f~l~~~--~~p~~Ll~~lRv~ 253 (378)
|+||+++|++||++|||+++ +||+|.|.|.+.++++|+++..|.++|+.+|+....+|.+..+ ++|++|++++|++
T Consensus 310 isYG~~~n~~Ll~~YGFv~~--~Np~D~v~l~l~~~~~d~l~~~K~~~L~~~gl~~~~~f~l~~~~~~~~~~Ll~~LRvl 387 (497)
T 3smt_A 310 IFYGTRSNAEFVIHSGFFFD--NNSHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHFTEPPISAQLLAFLRVF 387 (497)
T ss_dssp ECCCSCCHHHHHHHHSCCCT--TCTTCEEEEEEECCTTSTTHHHHHHHHHHTTCCSEEEEEEESSSSCSCHHHHHHHHHH
T ss_pred EeCCCCChHHHHHHCCCCCC--CCCCceEEEEecCCCcchhHHHHHHHHHHcCCCccceeeeecCCCCCCHHHHHHHHHH
Confidence 99999999999999999999 9999999999999999999999999999999998788888754 5789999999999
Q ss_pred cCCchhhhhHHHHHHHHhccc---CCCCCCCCchHHHHHHHHHHHHHHHHHhhccchhhhcCCCCCCCCCccchhhHHHH
Q 017053 254 VSPPSMKGKFEEMAAAASNKM---TSKKDIKCPEIDEQALQFILDSCESSISKYSRFLQASGSMDLDTTSPKQLNRRVFL 330 (378)
Q Consensus 254 ~~~~~e~~~~~~l~~~~~~~~---~~~~~~~s~~nE~~~~~~L~~~~~~~L~~y~tt~eeD~~~l~~~~~~~~~~~~~~~ 330 (378)
+++++++..+.. .+....+. .....++|.+||.+++++|.+.|+.+|+.|+||+++|++++.+. .++. |
T Consensus 388 ~~~~~el~~~~~-~~~~~~~~~~l~~~~~piS~~nE~~v~~~L~~~~~~~L~~Y~TtieeDe~lL~~~----~ls~---r 459 (497)
T 3smt_A 388 CMTEEELKEHLL-GDSAIDRIFTLGNSEFPVSWDNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLKNH----DLSV---R 459 (497)
T ss_dssp TCCHHHHHHHHH-TCSSSCTTTTTTCTTSCSCHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHTTCT----TSCH---H
T ss_pred hCCHHHHHHHhc-ccchhhhhhhcccccCCCChhhHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHhcC----CCCH---H
Confidence 999988754321 00000111 11234678999999999999999999999999999999987652 1333 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 017053 331 KQLAVDLCTSERRILFRAQYILRRRLRDIR 360 (378)
Q Consensus 331 ~~~A~~~R~~EK~IL~~~~~~l~~~l~~l~ 360 (378)
+++|+++|+|||+||+++++.++.+....+
T Consensus 460 ~r~Av~vR~gEK~IL~~~l~~~~~~~~~~~ 489 (497)
T 3smt_A 460 AKMAIKLRLGEKEILEKAVKSAAVNREYYR 489 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998776544
|
| >3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* | Back alignment and structure |
|---|
| >2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* | Back alignment and structure |
|---|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
| >1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* | Back alignment and structure |
|---|
| >3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* | Back alignment and structure |
|---|
| >3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* | Back alignment and structure |
|---|
| >3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* | Back alignment and structure |
|---|
| >3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
| >1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A | Back alignment and structure |
|---|
| >3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* | Back alignment and structure |
|---|
| >2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* | Back alignment and structure |
|---|
| >3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} | Back alignment and structure |
|---|
| >1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* | Back alignment and structure |
|---|
| >2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A | Back alignment and structure |
|---|
| >3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
| >3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 378 | ||||
| d2h2ja2 | 261 | b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain | 4e-24 | |
| d2h2ja1 | 176 | a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, sub | 2e-17 | |
| d2g46a1 | 119 | b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth | 2e-04 |
| >d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261 | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-clip superfamily: SET domain family: RuBisCo LSMT catalytic domain domain: RuBisCo LSMT catalytic domain species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 97.7 bits (242), Expect = 4e-24
Identities = 47/188 (25%), Positives = 68/188 (36%), Gaps = 19/188 (10%)
Query: 29 MCLLRSLFLYHRKGLLSVLPPTASLCHFRTR------AELDRYLEASQIRERAIERITNV 82
+ + R SV + T E + L+ SQ+ + + V
Sbjct: 76 WLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYV 135
Query: 83 IGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLN 142
L I LFP+ ++ F W+FGIL SR + +VP AD++N
Sbjct: 136 KNECLKLEQEIILPNKRLFPDP-VTLDDFFWAFGILRSRAFSRLRNENL-VVVPMADLIN 193
Query: 143 HSC---------EVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYG-KKSNGELLLSYGF 192
HS EV+ + + GEQV+I Y KSN EL L YGF
Sbjct: 194 HSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGF 253
Query: 193 VPREGTNP 200
+ N
Sbjct: 254 IE-PNENR 260
|
| >d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 176 | Back information, alignment and structure |
|---|
| >d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 378 | |||
| d2h2ja2 | 261 | RuBisCo LSMT catalytic domain {Garden pea (Pisum s | 99.97 | |
| d2h2ja1 | 176 | RuBisCo LSMT C-terminal, substrate-binding domain | 99.88 | |
| d2g46a1 | 119 | Viral histone H3 Lysine 27 Methyltransferase {Para | 98.27 | |
| d2f69a2 | 171 | Histone H3 K4-specific methyltransferase SET7/9 ca | 97.6 | |
| d1mvha_ | 269 | SET domain of Clr4 {Fission yeast (Schizosaccharom | 97.08 | |
| d1ml9a_ | 284 | Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} | 96.92 |
| >d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-clip superfamily: SET domain family: RuBisCo LSMT catalytic domain domain: RuBisCo LSMT catalytic domain species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.97 E-value=4.8e-32 Score=250.39 Aligned_cols=176 Identities=28% Similarity=0.396 Sum_probs=150.4
Q ss_pred chHHHHHHHHHHHHhh--cchHHHhhcCCCCCCCCCCCCHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 017053 22 RSSILVRMCLLRSLFL--YHRKGLLSVLPPTASLCHFRTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPD 99 (378)
Q Consensus 22 ~~~~~l~~~Ll~e~~~--s~w~pYl~~LP~~~~~pl~w~~~el~~~L~gs~l~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 99 (378)
.++..++++|++|+.. |.|+||+++||+.+.+|++|+.++++ .|+++.+...+....+.+..+|..+...+....++
T Consensus 74 ~~~~~l~~~l~~e~~~~~s~~~~y~~~lp~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (261)
T d2h2ja2 74 KPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQ-ELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKR 152 (261)
T ss_dssp CHHHHHHHHHHHHHHCTTCTTHHHHTTSCSCCSCGGGCCHHHHH-TTTTCHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CcHHHHHHHHHHHHhCCCCchhhhhhccccccCCcccCCHHHHH-HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3578999999999865 69999999999999999999999998 59999999999998999999999988776666665
Q ss_pred CCCcccccHHHHHHHHHhhhccceeccCCCCceeeeecccccCCCCCCcccEEeeC---------CCCeEEEEecCcCCC
Q 017053 100 LFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDK---------SSQGVVFTTDRQYQP 170 (378)
Q Consensus 100 ~f~~~~~t~e~f~wA~~~v~SRaf~~~~~~~~~~LvP~~Dm~NH~~~~~~~~~~~~---------~~~~~~~~a~~~i~~ 170 (378)
.++ ..++++.|.||+++|.||+|..+... ..+|+|++||+||++.+|+.+.++. .++.++++|.++|++
T Consensus 153 ~~~-~~~~~~~~~~a~~~v~sr~~~~~~~~-~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~~~~~~~l~A~r~I~~ 230 (261)
T d2h2ja2 153 LFP-DPVTLDDFFWAFGILRSRAFSRLRNE-NLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKA 230 (261)
T ss_dssp TCC-SCCCHHHHHHHHHHHHHHSBCCC----CCBCCTTGGGCEECSSCCSCCCCCC-----------CEEEEECSSCCCT
T ss_pred hcc-CccCHHHHHHHHHHhhcccccccccc-cccchhhhHHhhcCCCCCcccccccccCcccccCCCcEEEEEECCCCCC
Confidence 554 45899999999999999999887543 4799999999999999998765432 346789999999999
Q ss_pred CceeEecCCC-CChHHHHHhCCCccCCCCCCC
Q 017053 171 GEQVFISYGK-KSNGELLLSYGFVPREGTNPS 201 (378)
Q Consensus 171 Geei~i~YG~-~~n~~lL~~YGFv~~~~~Np~ 201 (378)
||||||+||+ ++|++||.+||||++ ++|||
T Consensus 231 GEEI~isYG~~~~n~~ll~~yGFv~~-~~n~~ 261 (261)
T d2h2ja2 231 GEQVYIQYDLNKSNAELALDYGFIEP-NENRH 261 (261)
T ss_dssp TSBCEECSCSSCCHHHHHHHSSCCCS-CGGGC
T ss_pred CCEEEEecCCCCCHHHHHHhCCCCCC-CCCCC
Confidence 9999999995 799999999999987 35886
|
| >d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
| >d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} | Back information, alignment and structure |
|---|
| >d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} | Back information, alignment and structure |
|---|