Citrus Sinensis ID: 017068

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWKLPS
Secondary Structure (PSIPRED)
ccccccEEEEcccccccHHHHHHHHHHcccEEEHHccccccccccccccEEEcccccccccccccEEEEEEccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHEEccEEEEEccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEccccccHHHHHHHcccccEEEEEcccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHccccEEEEEEcccccccccEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEcccccHHHHHHHHHHHccccEEEEEHcccccccccccEcEHHcccccccccccccEEEEEEHHEcccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHcccccccccccccccccccHEcccHHcccccccccccccccccccccHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEHEEcHHccHHHHHHHccccEEEEEEEcccccccccEEEcccEEEEEcccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHcccEEEEEEcccccccccEEEEEEEEEEEccc
Coil and Loop (DISEMBL)
mlseniltlsfaprdsHKAQIQFALERGIPAFVAMLgtrrlpfpafsfdivhcsrclipftaynATYLIEVDrllrpggylvisgppvqwpkqdkEWADLQAVARALCYELIAVDgntviwkkpvgesclsnqnefglelcdesddpnyAWYFKLKkcvsgtssvkgeyavgtipkwpqrltkapsralvmkngydvfeadSRRWRRRVAYYKNTlnvklgtpairNIMDMNAFFGGFaaaltsdpvwvmnvvparksstlsviydrgligvyhdwcepfstyprtydLIHVSGIEsliknpgsnknscSLVDLMVEMDrmlrpegtvvvrdspevIDKVSRIANTVRWTAavhdkepgsngrEKILVATKSLWKLPS
Flexible Loop (DISEMBL)
MLSENILTlsfaprdsHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCvsgtssvkgeyavgtipkwpqrltkapsralvmkngydvfeadsrrwRRRVAYYkntlnvklgtpAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIEsliknpgsnknSCSLVDLMVEMDRMLRPegtvvvrdspevidkvsriantvrwtaavhdkepgsngrekiLVATKSLWKLPS
Low Complexity Region (SEG)
MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWKLPS
Disordered region (IsUnstruct)
*****************KAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVH***********ILVA*********
Disordered Region (DISOPRED)
**SENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPV*******************DDPNYAWYFKLKKCVS************************************VFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGS*KNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHD*****NGREKILVATKSLWKL**
Disordered Region (DISEMBL)
MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWKLPS
Disordered Region (DISPRO)
*LSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVK****VGTIPKWPQRLTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWKLPS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWKLPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	378	2.2.26 [Sep-21-2011]
Q93W95	600	Probable methyltransferas	yes	no	1.0	0.63	0.820	0.0
Q9ZPH9	633	Probable methyltransferas	no	no	0.976	0.582	0.456	1e-99
Q9C884	639	Probable methyltransferas	no	no	0.981	0.580	0.445	1e-96
B9DFI7	616	Probable methyltransferas	no	no	0.968	0.594	0.466	4e-96
Q94EJ6	621	Probable methyltransferas	no	no	0.962	0.586	0.466	9e-95
O80844	631	Probable methyltransferas	no	no	0.981	0.587	0.433	6e-94
Q9C6S7	603	Probable methyltransferas	no	no	0.968	0.606	0.429	7e-94
Q94II3	600	Probable methyltransferas	no	no	0.968	0.61	0.439	9e-94
Q9SZX8	633	Probable methyltransferas	no	no	0.968	0.578	0.442	1e-93
Q9ZW75	611	Probable methyltransferas	no	no	0.965	0.597	0.435	6e-85

>sp|Q93W95|PMTD_ARATH Probable methyltransferase PMT13 OS=Arabidopsis thaliana GN=At4g00740 PE=1 SV=1

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/378 (82%), Positives = 350/378 (92%)

Query: 1   MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
           +LS+ IL LSFAPRDSHK+QIQFALERG+PAFVAMLGTRRLPFPA+SFD++HCSRCLIPF
Sbjct: 220 LLSQGILALSFAPRDSHKSQIQFALERGVPAFVAMLGTRRLPFPAYSFDLMHCSRCLIPF 279

Query: 61  TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVI 120
           TAYNATY IEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVI
Sbjct: 280 TAYNATYFIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVI 339

Query: 121 WKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQR 180
           WKKPVG+SCL +QNEFGLELCDES  P+ AWYFKLK+CV+  SSVKGE+A+GTI KWP+R
Sbjct: 340 WKKPVGDSCLPSQNEFGLELCDESVPPSDAWYFKLKRCVTRPSSVKGEHALGTISKWPER 399

Query: 181 LTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAA 240
           LTK PSRA+VMKNG DVFEAD+RRW RRVAYY+++LN+KL +P +RN+MDMNAFFGGFAA
Sbjct: 400 LTKVPSRAIVMKNGLDVFEADARRWARRVAYYRDSLNLKLKSPTVRNVMDMNAFFGGFAA 459

Query: 241 ALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 300
            L SDPVWVMNV+PARK  TL VIYDRGLIGVYHDWCEPFSTYPRTYD IHVSGIESLIK
Sbjct: 460 TLASDPVWVMNVIPARKPLTLDVIYDRGLIGVYHDWCEPFSTYPRTYDFIHVSGIESLIK 519

Query: 301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGS 360
              S+K+ CSLVDLMVEMDR+LRPEG VV+RDSPEV+DKV+R+A+ VRW++++H+KEP S
Sbjct: 520 RQDSSKSRCSLVDLMVEMDRILRPEGKVVIRDSPEVLDKVARMAHAVRWSSSIHEKEPES 579

Query: 361 NGREKILVATKSLWKLPS 378
           +GREKIL+ATKSLWKLPS
Sbjct: 580 HGREKILIATKSLWKLPS 597

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9ZPH9|PMTF_ARATH Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1

 Score =  363 bits (931), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 183/401 (45%), Positives = 249/401 (62%), Gaps = 32/401 (7%)

Query: 1   MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
           ++S NI+T+SFAPRD+H+AQ+QFALERG+PA + +L + RLPFPA +FDI HCSRCLIP+
Sbjct: 235 LMSRNIVTMSFAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPW 294

Query: 61  TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEW-----------ADLQAVARALCY 109
             YN TYLIEVDR+LRPGGY ++SGPP+ W +  K W           + ++ VAR+LC+
Sbjct: 295 GQYNGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCW 354

Query: 110 ELIAVDGNTVIWKKPVGE-SCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKG- 167
             +    +  +W+KP     C  N+   G         PN  WY KL+ C++    V G 
Sbjct: 355 RKLVQREDLAVWQKPTNHVHCKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGS 414

Query: 168 ---EYAVGTIPKWPQRLTKAPSRALVMKNG------YDVFEADSRRWRRRVAYYKNTLNV 218
              E A G + +WP+RL   P R   +K+G       D F +++ +W+RRV+YYK     
Sbjct: 415 EIKEVAGGQLARWPERLNALPPR---IKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQ 471

Query: 219 KLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWC 277
              T   RN +DMNA  GGFA+AL  DPVWVMNVVP   S +TL VIY+RGLIG Y +WC
Sbjct: 472 LAETGRYRNFLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWC 531

Query: 278 EPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVI 337
           E  STYPRTYD IH   + SL       K+ C + D+++EMDR+LRP+G+V++RD  +V+
Sbjct: 532 EAMSTYPRTYDFIHADSVFSLY------KDRCDMEDILLEMDRILRPKGSVIIRDDIDVL 585

Query: 338 DKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWKLPS 378
            KV +I + ++W   + D E G   REKIL   K  W  P+
Sbjct: 586 TKVKKITDAMQWEGRIGDHENGPLEREKILFLVKEYWTAPA 626

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1

 Score =  353 bits (906), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 177/397 (44%), Positives = 247/397 (62%), Gaps = 26/397 (6%)

Query: 1   MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
           +L  +I+ +SFAPRD+H+AQ+QFALERG+PA + ++G+RRLP+PA +FD+ HCSRCLIP+
Sbjct: 249 LLKRDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPW 308

Query: 61  TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWA-----------DLQAVARALCY 109
              +  YL EVDR+LRPGGY ++SGPP+ W K  K W             ++  AR+LC+
Sbjct: 309 FQNDGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIEDAARSLCW 368

Query: 110 ELIAVDGNTVIWKKPVGESCLSNQNEFGLE--LCDESDDPNYAWYFKLKKCVS--GTSSV 165
           + +   G+  IW+KP+     +          LC +SD P++AWY  L+ CV+    ++ 
Sbjct: 369 KKVTEKGDLSIWQKPINHVECNKLKRVHKTPPLCSKSDLPDFAWYKDLESCVTPLPEANS 428

Query: 166 KGEYAVGTIPKWPQRLTKAPSRAL---VMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGT 222
             E+A G +  WP R    P R +   +     + F  D+  W+ R++YYK  +  +L  
Sbjct: 429 SDEFAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERISYYKQIMP-ELSR 487

Query: 223 PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPAR-KSSTLSVIYDRGLIGVYHDWCEPFS 281
              RNIMDMNA+ GGFAAA+   P WVMNVVP   +  TL VI++RG IG Y DWCE FS
Sbjct: 488 GRFRNIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTYQDWCEGFS 547

Query: 282 TYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVS 341
           TYPRTYDLIH  G+ S+       +N C +  +++EMDR+LRPEGTVV RD+ E++ K+ 
Sbjct: 548 TYPRTYDLIHAGGLFSIY------ENRCDVTLILLEMDRILRPEGTVVFRDTVEMLTKIQ 601

Query: 342 RIANTVRWTAAVHDKEPGSNGREKILVATKSLWKLPS 378
            I N +RW + + D E G    EKIL+A KS W  PS
Sbjct: 602 SITNGMRWKSRILDHERGPFNPEKILLAVKSYWTGPS 638

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B9DFI7|PMT2_ARATH Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2

 Score =  352 bits (902), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 183/392 (46%), Positives = 250/392 (63%), Gaps = 26/392 (6%)

Query: 1   MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
           + S N+  +SFAPRDSH+AQ+QFALERG+PA + +LGT +LP+P  +FD+ HCSRCLIP+
Sbjct: 225 LWSRNVRAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPW 284

Query: 61  TAYNATYLIEVDRLLRPGGYLVISGPPVQW---------PKQD--KEWADLQAVARALCY 109
            A +  YL+EVDR+LRPGGY ++SGPP+ W         PK+D  +E   ++  A+ LC+
Sbjct: 285 GANDGMYLMEVDRVLRPGGYWILSGPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCW 344

Query: 110 ELIAVDGNTVIWKKPVG-ESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVS--GTSSVK 166
           E     G   IW+K V  E+C S Q++     C ++DD +  WY K++ C++    +S  
Sbjct: 345 EKKYEHGEIAIWQKRVNDEACRSRQDDPRANFC-KTDDTDDVWYKKMEACITPYPETSSS 403

Query: 167 GEYAVGTIPKWPQRLTKAPSR---ALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTP 223
            E A G +  +P RL   P R     +     D +E D+R+W++ V  YK  +N  L T 
Sbjct: 404 DEVAGGELQAFPDRLNAVPPRISSGSISGVTVDAYEDDNRQWKKHVKAYKR-INSLLDTG 462

Query: 224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPA-RKSSTLSVIYDRGLIGVYHDWCEPFST 282
             RNIMDMNA FGGFAAAL S  +WVMNVVP   + + L V+Y+RGLIG+YHDWCE FST
Sbjct: 463 RYRNIMDMNAGFGGFAAALESQKLWVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFST 522

Query: 283 YPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSR 342
           YPRTYDLIH + + SL       KN C+  D+++EMDR+LRPEG V++RD  + + KV R
Sbjct: 523 YPRTYDLIHANHLFSLY------KNKCNADDILLEMDRILRPEGAVIIRDDVDTLIKVKR 576

Query: 343 IANTVRWTAAVHDKEPGSNGREKILVATKSLW 374
           I   +RW A + D E G    EK+L+A K  W
Sbjct: 577 IIAGMRWDAKLVDHEDGPLVPEKVLIAVKQYW 608

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q94EJ6|PMTE_ARATH Probable methyltransferase PMT14 OS=Arabidopsis thaliana GN=At4g18030 PE=1 SV=1

 Score =  347 bits (890), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 182/390 (46%), Positives = 249/390 (63%), Gaps = 26/390 (6%)

Query: 1   MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
           ML  N+LT+SFAPRD+H+AQ+QFALERG+PA +A+LG+  LP+PA +FD+  CSRCLIP+
Sbjct: 224 MLKRNVLTMSFAPRDNHEAQVQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPW 283

Query: 61  TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEW----ADLQA-------VARALCY 109
           TA   TYL+EVDR+LRPGGY V+SGPP+ W    K W    A+L A       +A +LC+
Sbjct: 284 TANEGTYLMEVDRVLRPGGYWVLSGPPINWKTWHKTWNRTKAELNAEQKRIEGIAESLCW 343

Query: 110 ELIAVDGNTVIWKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEY 169
           E     G+  I++K + +   S      ++ C   D  +  WY +++ CV+    V  E 
Sbjct: 344 EKKYEKGDIAIFRKKINDR--SCDRSTPVDTCKRKDTDD-VWYKEIETCVTPFPKVSNEE 400

Query: 170 AV--GTIPKWPQRLTKAP---SRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPA 224
            V  G + K+P+RL   P   S+ L+     + ++ D   W++RV  YK  +N  +G+  
Sbjct: 401 EVAGGKLKKFPERLFAVPPSISKGLINGVDEESYQEDINLWKKRVTGYKR-INRLIGSTR 459

Query: 225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYP 284
            RN+MDMNA  GGFAAAL S   WVMNV+P    +TLSV+Y+RGLIG+YHDWCE FSTYP
Sbjct: 460 YRNVMDMNAGLGGFAAALESPKSWVMNVIPTINKNTLSVVYERGLIGIYHDWCEGFSTYP 519

Query: 285 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIA 344
           RTYD IH SG+ SL       ++SC L D+++E DR+LRPEG V+ RD  +V++ V +I 
Sbjct: 520 RTYDFIHASGVFSLY------QHSCKLEDILLETDRILRPEGIVIFRDEVDVLNDVRKIV 573

Query: 345 NTVRWTAAVHDKEPGSNGREKILVATKSLW 374
           + +RW   + D E G    EKILVATK  W
Sbjct: 574 DGMRWDTKLMDHEDGPLVPEKILVATKQYW 603

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O80844|PMTG_ARATH Probable methyltransferase PMT16 OS=Arabidopsis thaliana GN=At2g45750 PE=3 SV=1

 Score =  344 bits (883), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 174/401 (43%), Positives = 243/401 (60%), Gaps = 30/401 (7%)

Query: 1   MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
           +LS NI T+SFAPRD+H+AQ+QFALERG+PA + ++ T RLP+P+ +FD+ HCSRCLIP+
Sbjct: 226 LLSRNITTMSFAPRDTHEAQVQFALERGVPAMIGIMATIRLPYPSRAFDLAHCSRCLIPW 285

Query: 61  TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEW-----------ADLQAVARALCY 109
              +  YL+EVDR+LRPGGY ++SGPP+ W K+ K W             ++ VAR+LC+
Sbjct: 286 GQNDGAYLMEVDRVLRPGGYWILSGPPINWQKRWKGWERTMDDLNAEQTQIEQVARSLCW 345

Query: 110 ELIAVDGNTVIWKKPVGESCLSNQNEF--GLELCDESDDPNYAWYFKLKKCVSGTSSVKG 167
           + +    +  IW+KP          E     E C    DP+ AWY K+  C++    V  
Sbjct: 346 KKVVQRDDLAIWQKPFNHIDCKKTREVLKNPEFCRHDQDPDMAWYTKMDSCLTPLPEVDD 405

Query: 168 -----EYAVGTIPKWPQRLTKAPSR---ALVMKNGYDVFEADSRRWRRRVAYYKNTLNVK 219
                  A G + KWP RL   P R     + +   + F  +++ W++RV+YYK  L+ +
Sbjct: 406 AEDLKTVAGGKVEKWPARLNAIPPRVNKGALEEITPEAFLENTKLWKQRVSYYKK-LDYQ 464

Query: 220 LG-TPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPAR-KSSTLSVIYDRGLIGVYHDWC 277
           LG T   RN++DMNA+ GGFAAAL  DPVWVMNVVP   K +TL VIY+RGLIG Y +WC
Sbjct: 465 LGETGRYRNLVDMNAYLGGFAAALADDPVWVMNVVPVEAKLNTLGVIYERGLIGTYQNWC 524

Query: 278 EPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVI 337
           E  STYPRTYD IH   + +L       +  C   ++++EMDR+LRP G V++RD  +V+
Sbjct: 525 EAMSTYPRTYDFIHADSVFTLY------QGQCEPEEILLEMDRILRPGGGVIIRDDVDVL 578

Query: 338 DKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWKLPS 378
            KV  +   + W   + D E G + REKI  A K  W +P+
Sbjct: 579 IKVKELTKGLEWEGRIADHEKGPHEREKIYYAVKQYWTVPA 619

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9C6S7|PMTK_ARATH Probable methyltransferase PMT20 OS=Arabidopsis thaliana GN=At1g31850 PE=1 SV=1

 Score =  344 bits (882), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 167/389 (42%), Positives = 248/389 (63%), Gaps = 23/389 (5%)

Query: 1   MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
           +L   IL+LS APRD+H+AQ+QFALERGIPA + ++ T+RLPFP+ +FD+ HCSRCLIP+
Sbjct: 216 LLDRGILSLSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNAFDMAHCSRCLIPW 275

Query: 61  TAYNATYLIEVDRLLRPGGYLVISGPPVQWPK-----------QDKEWADLQAVARALCY 109
           T +   YL+E+ R++RPGG+ V+SGPPV + +           Q  ++  LQ++  ++C+
Sbjct: 276 TEFGGIYLLEIHRIVRPGGFWVLSGPPVNYNRRWRGWNTTMEDQKSDYNKLQSLLTSMCF 335

Query: 110 ELIAVDGNTVIWKKPVGESC---LSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVK 166
           +  A   +  +W+K   +SC   ++   E     CD+S +P+ AWY  L+ CV   +   
Sbjct: 336 KKYAQKDDIAVWQKLSDKSCYDKIAKNMEAYPPKCDDSIEPDSAWYTPLRPCVVAPTPKV 395

Query: 167 GEYAVGTIPKWPQRLTKAPSRALVMKNGY-DVFEADSRRWRRRVAYYKNTLNVKLGTPAI 225
            +  +G+IPKWP+RL  AP R   +  G  +  + D  +W+ RV +YK  L   LGT  I
Sbjct: 396 KKSGLGSIPKWPERLHVAPERIGDVHGGSANSLKHDDGKWKNRVKHYKKVLPA-LGTDKI 454

Query: 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPR 285
           RN+MDMN  +GGF+AAL  DP+WVMNVV +  +++L V++DRGLIG YHDWCE FSTYPR
Sbjct: 455 RNVMDMNTVYGGFSAALIEDPIWVMNVVSSYSANSLPVVFDRGLIGTYHDWCEAFSTYPR 514

Query: 286 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIAN 345
           TYDL+H+  + +L        + C +  +++EMDR+LRP G V++R+S   +D ++ +A 
Sbjct: 515 TYDLLHLDSLFTL------ESHRCEMKYILLEMDRILRPSGYVIIRESSYFMDAITTLAK 568

Query: 346 TVRWTAAVHDKEPGSNGREKILVATKSLW 374
            +RW+    + E      EKILV  K LW
Sbjct: 569 GIRWSCRREETEYAVKS-EKILVCQKKLW 596

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q94II3|PMTL_ARATH Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1

 Score =  343 bits (881), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 171/389 (43%), Positives = 242/389 (62%), Gaps = 23/389 (5%)

Query: 1   MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
           +L   ILT+S APRD+H+AQ+QFALERGIPA + ++ T+RLPFP+ SFD+ HCSRCLIP+
Sbjct: 210 LLDRGILTVSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNSFDMAHCSRCLIPW 269

Query: 61  TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEW-----------ADLQAVARALCY 109
           T +   YL+EV R+LRPGG+ V+SGPPV +  + K W             LQ +  ++C+
Sbjct: 270 TEFGGVYLLEVHRILRPGGFWVLSGPPVNYENRWKGWDTTIEEQRSNYEKLQELLSSMCF 329

Query: 110 ELIAVDGNTVIWKKPVGESC---LSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVK 166
           ++ A   +  +W+K     C   LSN  +     CD+S +P+ AWY  L+ CV   S   
Sbjct: 330 KMYAKKDDIAVWQKSPDNLCYNKLSNDPDAYPPKCDDSLEPDSAWYTPLRPCVVVPSPKL 389

Query: 167 GEYAVGTIPKWPQRLTKAPSRALVMKNGY-DVFEADSRRWRRRVAYYKNTLNVKLGTPAI 225
            +  + + PKWP+RL   P R   +  G  +VF+ D  +W+ R  +YK  L   +G+  I
Sbjct: 390 KKTDLESTPKWPERLHTTPERISDVPGGNGNVFKHDDSKWKTRAKHYKKLLPA-IGSDKI 448

Query: 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPR 285
           RN+MDMN  +GG AAAL +DP+WVMNVV +  ++TL V++DRGLIG YHDWCE FSTYPR
Sbjct: 449 RNVMDMNTAYGGLAAALVNDPLWVMNVVSSYAANTLPVVFDRGLIGTYHDWCEAFSTYPR 508

Query: 286 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIAN 345
           TYDL+HV G+ +      S    C +  +M+EMDR+LRP G  ++R+S    D ++ +A 
Sbjct: 509 TYDLLHVDGLFT------SESQRCDMKYVMLEMDRILRPSGYAIIRESSYFADSIASVAK 562

Query: 346 TVRWTAAVHDKEPGSNGREKILVATKSLW 374
            +RW+      E  S   EK+L+  K LW
Sbjct: 563 ELRWSCRKEQTESAS-ANEKLLICQKKLW 590

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SZX8|PMTH_ARATH Probable methyltransferase PMT17 OS=Arabidopsis thaliana GN=At4g10440 PE=3 SV=1

 Score =  343 bits (880), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 174/393 (44%), Positives = 247/393 (62%), Gaps = 27/393 (6%)

Query: 1   MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
           +L  +I+ +SFAPRD+H+AQ+QFALERG+PA + ++G+RRLP+PA +FD+ HCSRCLIP+
Sbjct: 232 LLKRDIMAVSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPW 291

Query: 61  TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQ-----------DKEWADLQAVARALCY 109
              +  YL+EVDR+LRPGGY ++SGPP+ W +             KE   ++ VA++LC+
Sbjct: 292 FKNDGLYLMEVDRVLRPGGYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCW 351

Query: 110 ELIAVDGNTVIWKKPVG--ESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKG 167
           + +   G+  IW+KP+   E     QN     +C  SD+ + AWY  L+ C++       
Sbjct: 352 KKVTEKGDLSIWQKPLNHIECKKLKQNNKSPPIC-SSDNADSAWYKDLETCITPLPETNN 410

Query: 168 --EYAVGTIPKWPQRLTKAPSRAL---VMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGT 222
             + A G +  WP R    P R +   + +   + F  D+  W+ R+A+YK  +  +L  
Sbjct: 411 PDDSAGGALEDWPDRAFAVPPRIIRGTIPEMNAEKFREDNEVWKERIAHYKKIV-PELSH 469

Query: 223 PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPAR-KSSTLSVIYDRGLIGVYHDWCEPFS 281
              RNIMDMNAF GGFAA++   P WVMNVVP   +  TL VIY+RGLIG Y DWCE FS
Sbjct: 470 GRFRNIMDMNAFLGGFAASMLKYPSWVMNVVPVDAEKQTLGVIYERGLIGTYQDWCEGFS 529

Query: 282 TYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVS 341
           TYPRTYD+IH  G+ SL       ++ C L  +++EMDR+LRPEGTVV+RD+ E ++KV 
Sbjct: 530 TYPRTYDMIHAGGLFSLY------EHRCDLTLILLEMDRILRPEGTVVLRDNVETLNKVE 583

Query: 342 RIANTVRWTAAVHDKEPGSNGREKILVATKSLW 374
           +I   ++W + + D E G    EKILVA K+ W
Sbjct: 584 KIVKGMKWKSQIVDHEKGPFNPEKILVAVKTYW 616

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9ZW75|PMTJ_ARATH Probable methyltransferase PMT19 OS=Arabidopsis thaliana GN=At2g43200 PE=3 SV=1

 Score =  314 bits (805), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 169/388 (43%), Positives = 232/388 (59%), Gaps = 23/388 (5%)

Query: 1   MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
           +L+  ILT+S APRD H+AQ+QFALERG+PA + +L T +LP+P+ SFD+VHCSRCL+ +
Sbjct: 231 LLNYKILTMSIAPRDIHEAQVQFALERGLPAMLGVLSTYKLPYPSRSFDMVHCSRCLVNW 290

Query: 61  TAYNATYLIEVDRLLRPGGYLVISGPP----VQWPKQDKEWADLQA-------VARALCY 109
           T+Y+  YL+EVDR+LRP GY V+SGPP    V++  Q ++  +LQ        V R LC+
Sbjct: 291 TSYDGLYLMEVDRVLRPEGYWVLSGPPVASRVKFKNQKRDSKELQNQMEKLNDVFRRLCW 350

Query: 110 ELIAVDGNTVIWKKPVGE-SCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGE 168
           E IA     VIW+KP     C              S DP+ AWY +++ C++    V   
Sbjct: 351 EKIAESYPVVIWRKPSNHLQCRKRLKALKFPGLCSSSDPDAAWYKEMEPCITPLPDVNDT 410

Query: 169 YAVGTIPKWPQRLTKAPSRALVMKNGYDV--FEADSRRWRRRVAYYKNTLNVKLGTPAIR 226
                +  WP+RL   P        G  +  F+AD+  W+RRV YY       L     R
Sbjct: 411 NKT-VLKNWPERLNHVPRMKTGSIQGTTIAGFKADTNLWQRRVLYYDTKFKF-LSNGKYR 468

Query: 227 NIMDMNAFFGGFAAALTSDPVWVMNVVPAR-KSSTLSVIYDRGLIGVYHDWCEPFSTYPR 285
           N++DMNA  GGFAAAL   P+WVMNVVP   K +TL V+YDRGLIG Y +WCE  STYPR
Sbjct: 469 NVIDMNAGLGGFAAALIKYPMWVMNVVPFDLKPNTLGVVYDRGLIGTYMNWCEALSTYPR 528

Query: 286 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIAN 345
           TYDLIH +G+ SL        + C +VD+++EM R+LRPEG V++RD  +V+ KV  I N
Sbjct: 529 TYDLIHANGVFSLY------LDKCDIVDILLEMQRILRPEGAVIIRDRFDVLVKVKAITN 582

Query: 346 TVRWTAAVHDKEPGSNGREKILVATKSL 373
            +RW   ++ ++        IL+   S+
Sbjct: 583 QMRWNGTMYPEDNSVFDHGTILIVDNSI 610

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
224130116	594	predicted protein [Populus trichocarpa]	0.994	0.632	0.840	0.0
449432183	593	PREDICTED: probable methyltransferase PM	0.997	0.635	0.830	0.0
225453730	597	PREDICTED: probable methyltransferase PM	1.0	0.633	0.838	0.0
297810097	602	hypothetical protein ARALYDRAFT_490495 [	1.0	0.627	0.822	0.0
255541472	507	conserved hypothetical protein [Ricinus	0.994	0.741	0.828	0.0
18411430	600	putative methyltransferase PMT13 [Arabid	1.0	0.63	0.820	0.0
356520463	594	PREDICTED: probable methyltransferase PM	0.992	0.631	0.792	0.0
356505029	597	PREDICTED: probable methyltransferase PM	0.992	0.628	0.786	0.0
356568320	596	PREDICTED: probable methyltransferase PM	0.992	0.629	0.816	0.0
356532064	597	PREDICTED: probable methyltransferase PM	0.992	0.628	0.797	0.0

>gi|224130116|ref|XP_002320756.1| predicted protein [Populus trichocarpa] gi|222861529|gb|EEE99071.1| predicted protein [Populus trichocarpa]

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/376 (84%), Positives = 347/376 (92%)

Query: 1   MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
           +L E ILTLSFAPRDSHKAQIQFALERG+PAFVAMLGTRRLP+PAFSFD+VHCSRCLIPF
Sbjct: 218 LLKEGILTLSFAPRDSHKAQIQFALERGVPAFVAMLGTRRLPYPAFSFDLVHCSRCLIPF 277

Query: 61  TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVI 120
           TAYNA+Y IEV+RLLRPGGYLVISGPPVQW KQDKEWADLQAVARALCYELIAVDGNTVI
Sbjct: 278 TAYNASYFIEVNRLLRPGGYLVISGPPVQWAKQDKEWADLQAVARALCYELIAVDGNTVI 337

Query: 121 WKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQR 180
           WKKP G+ CL NQNE+GLELCDESDDPN AWYFKLKKCVS TS+VKG+  +GTIPKWP R
Sbjct: 338 WKKPAGDLCLPNQNEYGLELCDESDDPNDAWYFKLKKCVSRTSAVKGDCTIGTIPKWPDR 397

Query: 181 LTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAA 240
           LTKAPSRA+ MKNG D+F+AD+RRW RRVAYYKN+LNVKLGTPAIRN+MDMNAFFG FAA
Sbjct: 398 LTKAPSRAVHMKNGLDLFDADTRRWVRRVAYYKNSLNVKLGTPAIRNVMDMNAFFGSFAA 457

Query: 241 ALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 300
           AL  DPVWVMNVVPARK STL VIYDRGLIGVYHDWCEPFSTYPR+YDLIHV+GIESL+K
Sbjct: 458 ALMPDPVWVMNVVPARKPSTLGVIYDRGLIGVYHDWCEPFSTYPRSYDLIHVAGIESLLK 517

Query: 301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGS 360
            PGS+KN C+LVDLMVEMDR+LRPEGTV++RDSPEVIDKV+R+A  VRW   +H+KEP S
Sbjct: 518 LPGSSKNRCNLVDLMVEMDRILRPEGTVIIRDSPEVIDKVARVALAVRWLVTIHEKEPES 577

Query: 361 NGREKILVATKSLWKL 376
           +GREKILVATK+ WKL
Sbjct: 578 SGREKILVATKTFWKL 593

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432183|ref|XP_004133879.1| PREDICTED: probable methyltransferase PMT13-like [Cucumis sativus] gi|449480142|ref|XP_004155811.1| PREDICTED: probable methyltransferase PMT13-like [Cucumis sativus]

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/377 (83%), Positives = 345/377 (91%)

Query: 1   MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
           ML+E+ILT+SFAPRDSHKAQIQFALERG+PAFVAMLGTR+LPFPAFSFD+VHCSRCLIPF
Sbjct: 217 MLAEDILTVSFAPRDSHKAQIQFALERGVPAFVAMLGTRKLPFPAFSFDLVHCSRCLIPF 276

Query: 61  TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVI 120
           TAYNATY IEVDRLLRPGG+LVISGPPVQWPKQDKEWADLQ+VARALCYELIAVDGNTVI
Sbjct: 277 TAYNATYFIEVDRLLRPGGFLVISGPPVQWPKQDKEWADLQSVARALCYELIAVDGNTVI 336

Query: 121 WKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQR 180
           WKKPVG+SCL NQNEFGLELC+ESDDPN AWY KL +CVS TSS K E+AVGTIPKWP R
Sbjct: 337 WKKPVGDSCLPNQNEFGLELCNESDDPNRAWYVKLNRCVSRTSSAKDEFAVGTIPKWPDR 396

Query: 181 LTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAA 240
           L KAP RA V+KNG DVF ADSRRW RRVAYYK +L +KLGTPA+RN+MDMNAFFGGFAA
Sbjct: 397 LAKAPPRAGVVKNGLDVFNADSRRWERRVAYYKKSLKLKLGTPAVRNVMDMNAFFGGFAA 456

Query: 241 ALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 300
           A+ SDPVWVMNVVP+ K STL+ IYDRGLIGVYHDWCEPFSTYPR+YD IHVSGIESL+ 
Sbjct: 457 AIKSDPVWVMNVVPSHKPSTLAAIYDRGLIGVYHDWCEPFSTYPRSYDFIHVSGIESLVN 516

Query: 301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGS 360
            PGS+K+ C+LVDLMVEMDR LRPEGTVV+RD+PE I++VSRIA  +RWTA VH+KEPGS
Sbjct: 517 YPGSDKSRCNLVDLMVEMDRFLRPEGTVVIRDNPEAIERVSRIARAIRWTATVHEKEPGS 576

Query: 361 NGREKILVATKSLWKLP 377
            GREKILVATK+ WKLP
Sbjct: 577 QGREKILVATKNFWKLP 593

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453730|ref|XP_002272714.1| PREDICTED: probable methyltransferase PMT13 [Vitis vinifera] gi|296089064|emb|CBI38767.3| unnamed protein product [Vitis vinifera]

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/378 (83%), Positives = 342/378 (90%)

Query: 1   MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
           +L++ ILT SFAPRDSHK+QIQFALERGIPA VAMLGTRRLPFPAFSFD+VHCSRCLIPF
Sbjct: 217 LLNQGILTFSFAPRDSHKSQIQFALERGIPALVAMLGTRRLPFPAFSFDLVHCSRCLIPF 276

Query: 61  TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVI 120
           TAYNATY +EVDRLLRPGGYLVISGPPV WPKQDKEWADLQAVARALCYEL AVDGNT I
Sbjct: 277 TAYNATYFLEVDRLLRPGGYLVISGPPVLWPKQDKEWADLQAVARALCYELKAVDGNTAI 336

Query: 121 WKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQR 180
           WKKP G+SCL NQNEFGLELCDESDD +YAWYFKLKKCV+  SSVK +  VG IP WP R
Sbjct: 337 WKKPAGDSCLPNQNEFGLELCDESDDSSYAWYFKLKKCVTRISSVKDDQVVGMIPNWPDR 396

Query: 181 LTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAA 240
           LTKAPSRA ++KNG DVFEAD+RRW RRVAYYKN+LN+KLGT AIRN+MDMNAFFGGFAA
Sbjct: 397 LTKAPSRATLLKNGIDVFEADTRRWARRVAYYKNSLNLKLGTAAIRNVMDMNAFFGGFAA 456

Query: 241 ALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 300
           ALTSDPVWVMNVVP RK STL VIYDRGLIGVYHDWCEPFSTYPRTYDLIHV+ IESLIK
Sbjct: 457 ALTSDPVWVMNVVPPRKPSTLGVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVTSIESLIK 516

Query: 301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGS 360
             GS KN C+LVDLMVEMDR+LRPEGTVV+RDSPEVIDK+ RIA  VRWTA +H+KEP S
Sbjct: 517 ILGSGKNRCNLVDLMVEMDRILRPEGTVVIRDSPEVIDKIGRIAQAVRWTATIHEKEPES 576

Query: 361 NGREKILVATKSLWKLPS 378
           +GREKILVATK+ WKLPS
Sbjct: 577 HGREKILVATKNFWKLPS 594

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810097|ref|XP_002872932.1| hypothetical protein ARALYDRAFT_490495 [Arabidopsis lyrata subsp. lyrata] gi|297318769|gb|EFH49191.1| hypothetical protein ARALYDRAFT_490495 [Arabidopsis lyrata subsp. lyrata]

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/378 (82%), Positives = 350/378 (92%)

Query: 1   MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
           +LS+ IL LSFAPRDSHK+QIQFALERG+PAFVAMLGTRRLPFPA+SFD++HCSRCLIPF
Sbjct: 222 LLSQGILALSFAPRDSHKSQIQFALERGVPAFVAMLGTRRLPFPAYSFDLMHCSRCLIPF 281

Query: 61  TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVI 120
           TAYNATY IEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVI
Sbjct: 282 TAYNATYFIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVI 341

Query: 121 WKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQR 180
           WKKPVG+SCL +QNEFGLELCDES  P+ AWYFKLK+CV+  SSVKGE A+GTI KWP+R
Sbjct: 342 WKKPVGDSCLPSQNEFGLELCDESVPPSDAWYFKLKRCVTRPSSVKGEQALGTISKWPER 401

Query: 181 LTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAA 240
           LTK PSRA+VMKNG DVFEAD+RRW RRVAYY+++LN+KL +P +RN+MDMNAFFGGFAA
Sbjct: 402 LTKVPSRAIVMKNGLDVFEADARRWARRVAYYRDSLNLKLKSPTVRNVMDMNAFFGGFAA 461

Query: 241 ALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 300
           AL SDPVWVMNV+PARK  TL VIYDRGLIGVYHDWCEPFSTYPRTYD IHVSGIESLIK
Sbjct: 462 ALASDPVWVMNVIPARKPLTLDVIYDRGLIGVYHDWCEPFSTYPRTYDFIHVSGIESLIK 521

Query: 301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGS 360
              S+K+ CSLVDLMVEMDR+LRPEG VV+RDSPEV+DKV+R+A+ VRW++++H+KEP S
Sbjct: 522 RQDSSKSRCSLVDLMVEMDRILRPEGKVVIRDSPEVLDKVARMAHAVRWSSSIHEKEPES 581

Query: 361 NGREKILVATKSLWKLPS 378
           +GREKIL+ATKSLWKLPS
Sbjct: 582 HGREKILIATKSLWKLPS 599

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541472|ref|XP_002511800.1| conserved hypothetical protein [Ricinus communis] gi|223548980|gb|EEF50469.1| conserved hypothetical protein [Ricinus communis]

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/378 (82%), Positives = 350/378 (92%), Gaps = 2/378 (0%)

Query: 1   MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
           +L E ILTLSFAPRDSHK+QIQFALERGIPAFVAMLGTRRLPFPAFSFD+VHCSRCLIPF
Sbjct: 129 LLKEGILTLSFAPRDSHKSQIQFALERGIPAFVAMLGTRRLPFPAFSFDLVHCSRCLIPF 188

Query: 61  TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVI 120
           TAYNATY +EVDRLLRPGGYLVISGPPVQW KQDKEWADLQ VARALCYELIAVDGNTVI
Sbjct: 189 TAYNATYFMEVDRLLRPGGYLVISGPPVQWAKQDKEWADLQGVARALCYELIAVDGNTVI 248

Query: 121 WKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQR 180
           WKKPVG+SCL NQNEFGLELC+ES+DP+ AWYFKLKKC+S   SV+GEYAVGTIPKWP R
Sbjct: 249 WKKPVGDSCLPNQNEFGLELCEESEDPSQAWYFKLKKCLSRIPSVEGEYAVGTIPKWPDR 308

Query: 181 LTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAA 240
           LT+APSRA+ MKNG D+FEAD+RRW RRV YY+N+LN+KLGT AIRN+MDMNAFFGGFA+
Sbjct: 309 LTEAPSRAMRMKNGIDLFEADTRRWARRVTYYRNSLNLKLGTQAIRNVMDMNAFFGGFAS 368

Query: 241 ALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 300
           AL+SDP WVMNVVPA K STL VI+DRGLIGVYHDWCEPFSTYPRTYDLIHV+GIESLIK
Sbjct: 369 ALSSDPAWVMNVVPAGKLSTLDVIFDRGLIGVYHDWCEPFSTYPRTYDLIHVAGIESLIK 428

Query: 301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGS 360
             GS+KN C+LVDLMVEMDR+LRPEGTV++RD+PEVID+V+ +A+ V+WTA +H+KEP S
Sbjct: 429 --GSSKNRCNLVDLMVEMDRILRPEGTVLIRDTPEVIDRVAHVAHAVKWTATIHEKEPES 486

Query: 361 NGREKILVATKSLWKLPS 378
           +GREKI+VATKS WKLPS
Sbjct: 487 HGREKIMVATKSFWKLPS 504

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411430|ref|NP_567184.1| putative methyltransferase PMT13 [Arabidopsis thaliana] gi|75163241|sp|Q93W95.1|PMTD_ARATH RecName: Full=Probable methyltransferase PMT13 gi|16648931|gb|AAL24317.1| Unknown protein [Arabidopsis thaliana] gi|16649087|gb|AAL24395.1| Unknown protein [Arabidopsis thaliana] gi|23197886|gb|AAN15470.1| Unknown protein [Arabidopsis thaliana] gi|30725428|gb|AAP37736.1| At4g00740 [Arabidopsis thaliana] gi|332656528|gb|AEE81928.1| putative methyltransferase PMT13 [Arabidopsis thaliana]

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/378 (82%), Positives = 350/378 (92%)

Query: 1   MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
           +LS+ IL LSFAPRDSHK+QIQFALERG+PAFVAMLGTRRLPFPA+SFD++HCSRCLIPF
Sbjct: 220 LLSQGILALSFAPRDSHKSQIQFALERGVPAFVAMLGTRRLPFPAYSFDLMHCSRCLIPF 279

Query: 61  TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVI 120
           TAYNATY IEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVI
Sbjct: 280 TAYNATYFIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVI 339

Query: 121 WKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQR 180
           WKKPVG+SCL +QNEFGLELCDES  P+ AWYFKLK+CV+  SSVKGE+A+GTI KWP+R
Sbjct: 340 WKKPVGDSCLPSQNEFGLELCDESVPPSDAWYFKLKRCVTRPSSVKGEHALGTISKWPER 399

Query: 181 LTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAA 240
           LTK PSRA+VMKNG DVFEAD+RRW RRVAYY+++LN+KL +P +RN+MDMNAFFGGFAA
Sbjct: 400 LTKVPSRAIVMKNGLDVFEADARRWARRVAYYRDSLNLKLKSPTVRNVMDMNAFFGGFAA 459

Query: 241 ALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 300
            L SDPVWVMNV+PARK  TL VIYDRGLIGVYHDWCEPFSTYPRTYD IHVSGIESLIK
Sbjct: 460 TLASDPVWVMNVIPARKPLTLDVIYDRGLIGVYHDWCEPFSTYPRTYDFIHVSGIESLIK 519

Query: 301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGS 360
              S+K+ CSLVDLMVEMDR+LRPEG VV+RDSPEV+DKV+R+A+ VRW++++H+KEP S
Sbjct: 520 RQDSSKSRCSLVDLMVEMDRILRPEGKVVIRDSPEVLDKVARMAHAVRWSSSIHEKEPES 579

Query: 361 NGREKILVATKSLWKLPS 378
           +GREKIL+ATKSLWKLPS
Sbjct: 580 HGREKILIATKSLWKLPS 597

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520463|ref|XP_003528881.1| PREDICTED: probable methyltransferase PMT13-like [Glycine max]

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 297/375 (79%), Positives = 342/375 (91%)

Query: 1   MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
           +L++NILT+SFAPRDSHK+QIQFALERG+PAFVAMLGTRRLPFPAF FD+VHCSRCLIPF
Sbjct: 219 LLAQNILTMSFAPRDSHKSQIQFALERGVPAFVAMLGTRRLPFPAFGFDLVHCSRCLIPF 278

Query: 61  TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVI 120
           TAYNA+Y IEVDRLLRPGGYLVISGPPVQWPKQDKEW+DLQAVARALCYELIAVDGNTVI
Sbjct: 279 TAYNASYFIEVDRLLRPGGYLVISGPPVQWPKQDKEWSDLQAVARALCYELIAVDGNTVI 338

Query: 121 WKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQR 180
           WKKP  E CL NQNEFGL+LCD+SDDP++AWYFKLKKC++  SSVKGEYA+GTIPKWP+R
Sbjct: 339 WKKPAVEMCLPNQNEFGLDLCDDSDDPSFAWYFKLKKCITRMSSVKGEYAIGTIPKWPER 398

Query: 181 LTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAA 240
           LT +P R+ V+KNG DV+EAD++RW RRVA+YKN+L +KLGTPA+RN+MDMNAFFGGFAA
Sbjct: 399 LTASPPRSTVLKNGADVYEADTKRWVRRVAHYKNSLKIKLGTPAVRNVMDMNAFFGGFAA 458

Query: 241 ALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 300
           AL SDPVWVMNVVP+ K  TL  I+DRGLIGVYHDWCEPFSTYPRTYDLIH + IESLIK
Sbjct: 459 ALNSDPVWVMNVVPSHKPITLDAIFDRGLIGVYHDWCEPFSTYPRTYDLIHATSIESLIK 518

Query: 301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGS 360
           +P S +N CSL+DLMVE+DR+LRPEGTVVVRD+PEVI+KV+R+   VRW   +++KEP S
Sbjct: 519 DPASGRNRCSLLDLMVELDRILRPEGTVVVRDTPEVIEKVARVVRAVRWKPTIYNKEPES 578

Query: 361 NGREKILVATKSLWK 375
           +GREKILVATK+ WK
Sbjct: 579 HGREKILVATKTFWK 593

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505029|ref|XP_003521295.1| PREDICTED: probable methyltransferase PMT13-like [Glycine max]

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 295/375 (78%), Positives = 343/375 (91%)

Query: 1   MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
           +L++NILT+SFAPRDSHK+QIQFALERG+PAFVAMLGTRRLPFPAF FD+VHCSRCLIPF
Sbjct: 222 LLAQNILTMSFAPRDSHKSQIQFALERGVPAFVAMLGTRRLPFPAFGFDLVHCSRCLIPF 281

Query: 61  TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVI 120
           TAYN +Y IEVDRLLRPGGYLVISGPPVQWPKQDKEW+DLQAVARALCYELIAVDGNTVI
Sbjct: 282 TAYNVSYFIEVDRLLRPGGYLVISGPPVQWPKQDKEWSDLQAVARALCYELIAVDGNTVI 341

Query: 121 WKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQR 180
           WKKP  E CL NQNEFGL+LCD+SDDP++AWYFKLKKCV+  SSVKGEYA+GTIPKWP+R
Sbjct: 342 WKKPAAEMCLPNQNEFGLDLCDDSDDPSFAWYFKLKKCVTRMSSVKGEYAIGTIPKWPER 401

Query: 181 LTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAA 240
           LT +P R+ V+KNG DV+EAD++RW RRVA+YKN+L +KLGT A+RN+MDMNAFFGGFAA
Sbjct: 402 LTASPLRSTVLKNGADVYEADTKRWVRRVAHYKNSLKIKLGTSAVRNVMDMNAFFGGFAA 461

Query: 241 ALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 300
           AL SDPVWVMNVVP+ K  TL  I+DRGLIGVYHDWCEPFSTYPRTYDLIHV+ +ESL+K
Sbjct: 462 ALNSDPVWVMNVVPSHKPITLDAIFDRGLIGVYHDWCEPFSTYPRTYDLIHVASMESLVK 521

Query: 301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGS 360
           +P S +N C+L+DLMVE+DR+LRPEGTVVVRD+PEVI+KV+R+A+ VRW   +++KEP S
Sbjct: 522 DPASGRNRCTLLDLMVELDRILRPEGTVVVRDTPEVIEKVARVAHAVRWKPTIYNKEPES 581

Query: 361 NGREKILVATKSLWK 375
           +GREKILVATK+ WK
Sbjct: 582 HGREKILVATKTFWK 596

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568320|ref|XP_003552360.1| PREDICTED: probable methyltransferase PMT13-like [Glycine max]

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/376 (81%), Positives = 344/376 (91%), Gaps = 1/376 (0%)

Query: 1   MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
           MLS+NILT+SFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAF FD+VHCSRCLIPF
Sbjct: 222 MLSKNILTMSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFGFDLVHCSRCLIPF 281

Query: 61  TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVI 120
           TAYNA+Y IEVDRLLRPGGYLVISGPPVQWPKQDKEW+DLQAVARALCYELIAVDGNTVI
Sbjct: 282 TAYNASYFIEVDRLLRPGGYLVISGPPVQWPKQDKEWSDLQAVARALCYELIAVDGNTVI 341

Query: 121 WKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQR 180
           WKKPVGESCL N+NEFGLELCD+SD P+ AWYFKLKKCVS TS VKG+YA+G IPKWP+R
Sbjct: 342 WKKPVGESCLPNENEFGLELCDDSDYPSQAWYFKLKKCVSRTS-VKGDYAIGIIPKWPER 400

Query: 181 LTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAA 240
           LT  P R+ ++KNG DV+EAD++RW RRVA+YKN+L +KLGT  +RN+MDMNA FGGFAA
Sbjct: 401 LTAIPPRSTLLKNGVDVYEADTKRWARRVAHYKNSLKIKLGTRFVRNVMDMNALFGGFAA 460

Query: 241 ALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 300
           AL SDPVWV+NVVPA K  TL VI+DRGLIGVYHDWCEPFSTYPR+YDLIHV+ IESLIK
Sbjct: 461 ALKSDPVWVINVVPALKPPTLDVIFDRGLIGVYHDWCEPFSTYPRSYDLIHVASIESLIK 520

Query: 301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGS 360
           +P S +N C+LVDLMVE+DRMLRPEGTVVVRD+PEVID+V+RIA+ VRW   V+DKEP S
Sbjct: 521 DPASGQNRCTLVDLMVEIDRMLRPEGTVVVRDAPEVIDRVARIASAVRWKPTVYDKEPES 580

Query: 361 NGREKILVATKSLWKL 376
           +GREKILVATK+LWKL
Sbjct: 581 HGREKILVATKTLWKL 596

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532064|ref|XP_003534594.1| PREDICTED: probable methyltransferase PMT13-like [Glycine max]

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/376 (79%), Positives = 340/376 (90%), Gaps = 1/376 (0%)

Query: 1   MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
           MLS+NILT+SFAPRDSHKAQIQFALERG+PAFVAMLGTRR PFPAF FD+VHCSRCLIPF
Sbjct: 223 MLSKNILTMSFAPRDSHKAQIQFALERGVPAFVAMLGTRRQPFPAFGFDLVHCSRCLIPF 282

Query: 61  TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVI 120
           TAYNA+Y IEVDRLLRPGGY VISGPPVQWPKQDKEW+DLQAVARALCYELIAVDGNTVI
Sbjct: 283 TAYNASYFIEVDRLLRPGGYFVISGPPVQWPKQDKEWSDLQAVARALCYELIAVDGNTVI 342

Query: 121 WKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQR 180
           WKKP GESCL N+NEFGLELCD+SDDP+ AWYFKLKKCVS T  VKG+YA+G IPKWP+R
Sbjct: 343 WKKPAGESCLPNENEFGLELCDDSDDPSQAWYFKLKKCVSRTY-VKGDYAIGIIPKWPER 401

Query: 181 LTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAA 240
           LT  P R+ ++KNG DV+EAD++RW RRVA+YKN+L +KLGT ++RN+MDMNA FGGFAA
Sbjct: 402 LTATPPRSTLLKNGVDVYEADTKRWVRRVAHYKNSLKIKLGTQSVRNVMDMNALFGGFAA 461

Query: 241 ALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 300
           AL SDPVWVMNVVPA+K  TL VI+DRGLIGVYHDWCEPFSTYPR+YDLIHV  +ESLIK
Sbjct: 462 ALKSDPVWVMNVVPAQKPPTLDVIFDRGLIGVYHDWCEPFSTYPRSYDLIHVVSVESLIK 521

Query: 301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGS 360
           +P S +N C+LVDLMVE+DR+LRPEGT+VVRD+PEVID+V+ IA  VRW   V+DKEP S
Sbjct: 522 DPASGQNRCTLVDLMVEIDRILRPEGTMVVRDAPEVIDRVAHIAGAVRWKPTVYDKEPES 581

Query: 361 NGREKILVATKSLWKL 376
           +GREKILVATK+LWKL
Sbjct: 582 HGREKILVATKTLWKL 597

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
TAIR|locus:2117733	600	QUA3 "QUASIMODO 3" [Arabidopsi	1.0	0.63	0.820	7.5e-176
TAIR|locus:2117728	633	AT4G00750 [Arabidopsis thalian	0.973	0.581	0.457	2.4e-92
TAIR|locus:2196651	639	AT1G33170 [Arabidopsis thalian	0.981	0.580	0.453	9.3e-91
TAIR|locus:2202805	616	AT1G26850 [Arabidopsis thalian	0.962	0.590	0.469	1.5e-90
TAIR|locus:2141035	621	AT4G18030 [Arabidopsis thalian	0.955	0.581	0.473	5.1e-90
TAIR|locus:2127711	633	AT4G10440 [Arabidopsis thalian	0.968	0.578	0.445	2.5e-88
TAIR|locus:2134756	600	ERD3 "early-responsive to dehy	0.968	0.61	0.439	8.6e-88
TAIR|locus:2034522	603	AT1G31850 [Arabidopsis thalian	0.965	0.605	0.438	1.8e-87
TAIR|locus:2041031	611	AT2G43200 [Arabidopsis thalian	0.962	0.595	0.439	1.4e-80
TAIR|locus:2063947	694	AT2G39750 [Arabidopsis thalian	0.957	0.521	0.417	9.7e-80

TAIR|locus:2117733 QUA3 "QUASIMODO 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1708 (606.3 bits), Expect = 7.5e-176, P = 7.5e-176
 Identities = 310/378 (82%), Positives = 350/378 (92%)

Query:     1 MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
             +LS+ IL LSFAPRDSHK+QIQFALERG+PAFVAMLGTRRLPFPA+SFD++HCSRCLIPF
Sbjct:   220 LLSQGILALSFAPRDSHKSQIQFALERGVPAFVAMLGTRRLPFPAYSFDLMHCSRCLIPF 279

Query:    61 TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVI 120
             TAYNATY IEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVI
Sbjct:   280 TAYNATYFIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVI 339

Query:   121 WKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQR 180
             WKKPVG+SCL +QNEFGLELCDES  P+ AWYFKLK+CV+  SSVKGE+A+GTI KWP+R
Sbjct:   340 WKKPVGDSCLPSQNEFGLELCDESVPPSDAWYFKLKRCVTRPSSVKGEHALGTISKWPER 399

Query:   181 LTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAA 240
             LTK PSRA+VMKNG DVFEAD+RRW RRVAYY+++LN+KL +P +RN+MDMNAFFGGFAA
Sbjct:   400 LTKVPSRAIVMKNGLDVFEADARRWARRVAYYRDSLNLKLKSPTVRNVMDMNAFFGGFAA 459

Query:   241 ALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 300
              L SDPVWVMNV+PARK  TL VIYDRGLIGVYHDWCEPFSTYPRTYD IHVSGIESLIK
Sbjct:   460 TLASDPVWVMNVIPARKPLTLDVIYDRGLIGVYHDWCEPFSTYPRTYDFIHVSGIESLIK 519

Query:   301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGS 360
                S+K+ CSLVDLMVEMDR+LRPEG VV+RDSPEV+DKV+R+A+ VRW++++H+KEP S
Sbjct:   520 RQDSSKSRCSLVDLMVEMDRILRPEGKVVIRDSPEVLDKVARMAHAVRWSSSIHEKEPES 579

Query:   361 NGREKILVATKSLWKLPS 378
             +GREKIL+ATKSLWKLPS
Sbjct:   580 HGREKILIATKSLWKLPS 597

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

GO:0052546 "cell wall pectin metabolic process" evidence=IMP

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2117728 AT4G00750 [Arabidopsis thaliana (taxid:3702)]

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 184/402 (45%), Positives = 251/402 (62%)

Query:     1 MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
             ++S NI+T+SFAPRD+H+AQ+QFALERG+PA + +L + RLPFPA +FDI HCSRCLIP+
Sbjct:   235 LMSRNIVTMSFAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPW 294

Query:    61 TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEW-----------ADLQAVARALCY 109
               YN TYLIEVDR+LRPGGY ++SGPP+ W +  K W           + ++ VAR+LC+
Sbjct:   295 GQYNGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCW 354

Query:   110 ELIAVDGNTVIWKKPVGE-SCLSNQNEFGLE-LCDESDDPNYAWYFKLKKCVSGTSSVKG 167
               +    +  +W+KP     C  N+   G    C  +  PN  WY KL+ C++    V G
Sbjct:   355 RKLVQREDLAVWQKPTNHVHCKRNRIALGRPPFCHRTL-PNQGWYTKLETCLTPLPEVTG 413

Query:   168 ----EYAVGTIPKWPQRLTKAPSRALVMKNGY------DVFEADSRRWRRRVAYYKNTLN 217
                 E A G + +WP+RL   P R   +K+G       D F +++ +W+RRV+YYK    
Sbjct:   414 SEIKEVAGGQLARWPERLNALPPR---IKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQ 470

Query:   218 VKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDW 276
                 T   RN +DMNA  GGFA+AL  DPVWVMNVVP   S +TL VIY+RGLIG Y +W
Sbjct:   471 QLAETGRYRNFLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNW 530

Query:   277 CEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEV 336
             CE  STYPRTYD IH   + SL K+       C + D+++EMDR+LRP+G+V++RD  +V
Sbjct:   531 CEAMSTYPRTYDFIHADSVFSLYKD------RCDMEDILLEMDRILRPKGSVIIRDDIDV 584

Query:   337 IDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWKLPS 378
             + KV +I + ++W   + D E G   REKIL   K  W  P+
Sbjct:   585 LTKVKKITDAMQWEGRIGDHENGPLEREKILFLVKEYWTAPA 626

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2196651 AT1G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
 Identities = 180/397 (45%), Positives = 247/397 (62%)

Query:     1 MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
             +L  +I+ +SFAPRD+H+AQ+QFALERG+PA + ++G+RRLP+PA +FD+ HCSRCLIP+
Sbjct:   249 LLKRDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPW 308

Query:    61 TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWA----DLQA-------VARALCY 109
                +  YL EVDR+LRPGGY ++SGPP+ W K  K W     DL+         AR+LC+
Sbjct:   309 FQNDGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIEDAARSLCW 368

Query:   110 ELIAVDGNTVIWKKPVGE-SCLSNQNEFGLE-LCDESDDPNYAWYFKLKKCVSGTSSVKG 167
             + +   G+  IW+KP+    C   +       LC +SD P++AWY  L+ CV+       
Sbjct:   369 KKVTEKGDLSIWQKPINHVECNKLKRVHKTPPLCSKSDLPDFAWYKDLESCVTPLPEANS 428

Query:   168 --EYAVGTIPKWPQRLTKAPSRAL---VMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGT 222
               E+A G +  WP R    P R +   +     + F  D+  W+ R++YYK  +  +L  
Sbjct:   429 SDEFAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERISYYKQIMP-ELSR 487

Query:   223 PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPA-RKSSTLSVIYDRGLIGVYHDWCEPFS 281
                RNIMDMNA+ GGFAAA+   P WVMNVVP   +  TL VI++RG IG Y DWCE FS
Sbjct:   488 GRFRNIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTYQDWCEGFS 547

Query:   282 TYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVS 341
             TYPRTYDLIH  G+ S+ +N       C +  +++EMDR+LRPEGTVV RD+ E++ K+ 
Sbjct:   548 TYPRTYDLIHAGGLFSIYEN------RCDVTLILLEMDRILRPEGTVVFRDTVEMLTKIQ 601

Query:   342 RIANTVRWTAAVHDKEPGSNGREKILVATKSLWKLPS 378
              I N +RW + + D E G    EKIL+A KS W  PS
Sbjct:   602 SITNGMRWKSRILDHERGPFNPEKILLAVKSYWTGPS 638

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2202805 AT1G26850 [Arabidopsis thaliana (taxid:3702)]

 Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
 Identities = 183/390 (46%), Positives = 249/390 (63%)

Query:     3 SENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA 62
             S N+  +SFAPRDSH+AQ+QFALERG+PA + +LGT +LP+P  +FD+ HCSRCLIP+ A
Sbjct:   227 SRNVRAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWGA 286

Query:    63 YNATYLIEVDRLLRPGGYLVISGPPVQW---------PKQD--KEWADLQAVARALCYEL 111
              +  YL+EVDR+LRPGGY ++SGPP+ W         PK+D  +E   ++  A+ LC+E 
Sbjct:   287 NDGMYLMEVDRVLRPGGYWILSGPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWEK 346

Query:   112 IAVDGNTVIWKKPVG-ESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSG--TSSVKGE 168
                 G   IW+K V  E+C S Q++     C ++DD +  WY K++ C++    +S   E
Sbjct:   347 KYEHGEIAIWQKRVNDEACRSRQDDPRANFC-KTDDTDDVWYKKMEACITPYPETSSSDE 405

Query:   169 YAVGTIPKWPQRLTKAPSR---ALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAI 225
              A G +  +P RL   P R     +     D +E D+R+W++ V  YK  +N  L T   
Sbjct:   406 VAGGELQAFPDRLNAVPPRISSGSISGVTVDAYEDDNRQWKKHVKAYKR-INSLLDTGRY 464

Query:   226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPA-RKSSTLSVIYDRGLIGVYHDWCEPFSTYP 284
             RNIMDMNA FGGFAAAL S  +WVMNVVP   + + L V+Y+RGLIG+YHDWCE FSTYP
Sbjct:   465 RNIMDMNAGFGGFAAALESQKLWVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYP 524

Query:   285 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIA 344
             RTYDLIH + + SL KN       C+  D+++EMDR+LRPEG V++RD  + + KV RI 
Sbjct:   525 RTYDLIHANHLFSLYKN------KCNADDILLEMDRILRPEGAVIIRDDVDTLIKVKRII 578

Query:   345 NTVRWTAAVHDKEPGSNGREKILVATKSLW 374
               +RW A + D E G    EK+L+A K  W
Sbjct:   579 AGMRWDAKLVDHEDGPLVPEKVLIAVKQYW 608

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2141035 AT4G18030 [Arabidopsis thaliana (taxid:3702)]

 Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
 Identities = 186/393 (47%), Positives = 252/393 (64%)

Query:     1 MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
             ML  N+LT+SFAPRD+H+AQ+QFALERG+PA +A+LG+  LP+PA +FD+  CSRCLIP+
Sbjct:   224 MLKRNVLTMSFAPRDNHEAQVQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPW 283

Query:    61 TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEW----ADLQA-------VARALCY 109
             TA   TYL+EVDR+LRPGGY V+SGPP+ W    K W    A+L A       +A +LC+
Sbjct:   284 TANEGTYLMEVDRVLRPGGYWVLSGPPINWKTWHKTWNRTKAELNAEQKRIEGIAESLCW 343

Query:   110 ELIAVDGNTVIWKKPVGE-SCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGE 168
             E     G+  I++K + + SC        ++ C   D  +  WY +++ CV+    V  E
Sbjct:   344 EKKYEKGDIAIFRKKINDRSC---DRSTPVDTCKRKDTDD-VWYKEIETCVTPFPKVSNE 399

Query:   169 YAV--GTIPKWPQRLTKAP---SRALVMKNGYDV--FEADSRRWRRRVAYYKNTLNVKLG 221
               V  G + K+P+RL   P   S+ L+  NG D   ++ D   W++RV  YK  +N  +G
Sbjct:   400 EEVAGGKLKKFPERLFAVPPSISKGLI--NGVDEESYQEDINLWKKRVTGYKR-INRLIG 456

Query:   222 TPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFS 281
             +   RN+MDMNA  GGFAAAL S   WVMNV+P    +TLSV+Y+RGLIG+YHDWCE FS
Sbjct:   457 STRYRNVMDMNAGLGGFAAALESPKSWVMNVIPTINKNTLSVVYERGLIGIYHDWCEGFS 516

Query:   282 TYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVS 341
             TYPRTYD IH SG+ SL ++      SC L D+++E DR+LRPEG V+ RD  +V++ V 
Sbjct:   517 TYPRTYDFIHASGVFSLYQH------SCKLEDILLETDRILRPEGIVIFRDEVDVLNDVR 570

Query:   342 RIANTVRWTAAVHDKEPGSNGREKILVATKSLW 374
             +I + +RW   + D E G    EKILVATK  W
Sbjct:   571 KIVDGMRWDTKLMDHEDGPLVPEKILVATKQYW 603

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2127711 AT4G10440 [Arabidopsis thaliana (taxid:3702)]

 Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
 Identities = 175/393 (44%), Positives = 249/393 (63%)

Query:     1 MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
             +L  +I+ +SFAPRD+H+AQ+QFALERG+PA + ++G+RRLP+PA +FD+ HCSRCLIP+
Sbjct:   232 LLKRDIMAVSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPW 291

Query:    61 TAYNATYLIEVDRLLRPGGYLVISGPPVQWPK---------QD--KEWADLQAVARALCY 109
                +  YL+EVDR+LRPGGY ++SGPP+ W +         +D  KE   ++ VA++LC+
Sbjct:   292 FKNDGLYLMEVDRVLRPGGYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCW 351

Query:   110 ELIAVDGNTVIWKKPVGE-SCLS-NQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKG 167
             + +   G+  IW+KP+    C    QN     +C  SD+ + AWY  L+ C++       
Sbjct:   352 KKVTEKGDLSIWQKPLNHIECKKLKQNNKSPPICS-SDNADSAWYKDLETCITPLPETNN 410

Query:   168 --EYAVGTIPKWPQRLTKAPSRAL---VMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGT 222
               + A G +  WP R    P R +   + +   + F  D+  W+ R+A+YK  +  +L  
Sbjct:   411 PDDSAGGALEDWPDRAFAVPPRIIRGTIPEMNAEKFREDNEVWKERIAHYKKIVP-ELSH 469

Query:   223 PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPA-RKSSTLSVIYDRGLIGVYHDWCEPFS 281
                RNIMDMNAF GGFAA++   P WVMNVVP   +  TL VIY+RGLIG Y DWCE FS
Sbjct:   470 GRFRNIMDMNAFLGGFAASMLKYPSWVMNVVPVDAEKQTLGVIYERGLIGTYQDWCEGFS 529

Query:   282 TYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVS 341
             TYPRTYD+IH  G+ SL ++       C L  +++EMDR+LRPEGTVV+RD+ E ++KV 
Sbjct:   530 TYPRTYDMIHAGGLFSLYEH------RCDLTLILLEMDRILRPEGTVVLRDNVETLNKVE 583

Query:   342 RIANTVRWTAAVHDKEPGSNGREKILVATKSLW 374
             +I   ++W + + D E G    EKILVA K+ W
Sbjct:   584 KIVKGMKWKSQIVDHEKGPFNPEKILVAVKTYW 616

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2134756 ERD3 "early-responsive to dehydration 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
 Identities = 171/389 (43%), Positives = 242/389 (62%)

Query:     1 MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
             +L   ILT+S APRD+H+AQ+QFALERGIPA + ++ T+RLPFP+ SFD+ HCSRCLIP+
Sbjct:   210 LLDRGILTVSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNSFDMAHCSRCLIPW 269

Query:    61 TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEW-----------ADLQAVARALCY 109
             T +   YL+EV R+LRPGG+ V+SGPPV +  + K W             LQ +  ++C+
Sbjct:   270 TEFGGVYLLEVHRILRPGGFWVLSGPPVNYENRWKGWDTTIEEQRSNYEKLQELLSSMCF 329

Query:   110 ELIAVDGNTVIWKKPVGESC---LSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVK 166
             ++ A   +  +W+K     C   LSN  +     CD+S +P+ AWY  L+ CV   S   
Sbjct:   330 KMYAKKDDIAVWQKSPDNLCYNKLSNDPDAYPPKCDDSLEPDSAWYTPLRPCVVVPSPKL 389

Query:   167 GEYAVGTIPKWPQRLTKAPSRALVMKNGY-DVFEADSRRWRRRVAYYKNTLNVKLGTPAI 225
              +  + + PKWP+RL   P R   +  G  +VF+ D  +W+ R  +YK  L   +G+  I
Sbjct:   390 KKTDLESTPKWPERLHTTPERISDVPGGNGNVFKHDDSKWKTRAKHYKKLLPA-IGSDKI 448

Query:   226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPR 285
             RN+MDMN  +GG AAAL +DP+WVMNVV +  ++TL V++DRGLIG YHDWCE FSTYPR
Sbjct:   449 RNVMDMNTAYGGLAAALVNDPLWVMNVVSSYAANTLPVVFDRGLIGTYHDWCEAFSTYPR 508

Query:   286 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIAN 345
             TYDL+HV G+ +      S    C +  +M+EMDR+LRP G  ++R+S    D ++ +A 
Sbjct:   509 TYDLLHVDGLFT------SESQRCDMKYVMLEMDRILRPSGYAIIRESSYFADSIASVAK 562

Query:   346 TVRWTAAVHDKEPGSNGREKILVATKSLW 374
              +RW+      E  S   EK+L+  K LW
Sbjct:   563 ELRWSCRKEQTESAS-ANEKLLICQKKLW 590

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2034522 AT1G31850 [Arabidopsis thaliana (taxid:3702)]

 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 171/390 (43%), Positives = 253/390 (64%)

Query:     1 MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
             +L   IL+LS APRD+H+AQ+QFALERGIPA + ++ T+RLPFP+ +FD+ HCSRCLIP+
Sbjct:   216 LLDRGILSLSLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNAFDMAHCSRCLIPW 275

Query:    61 TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEW--------AD---LQAVARALCY 109
             T +   YL+E+ R++RPGG+ V+SGPPV + ++ + W        +D   LQ++  ++C+
Sbjct:   276 TEFGGIYLLEIHRIVRPGGFWVLSGPPVNYNRRWRGWNTTMEDQKSDYNKLQSLLTSMCF 335

Query:   110 ELIAVDGNTVIWKKPVGESC---LSNQNEFGLELCDESDDPNYAWYFKLKKCV-SGTSSV 165
             +  A   +  +W+K   +SC   ++   E     CD+S +P+ AWY  L+ CV + T  V
Sbjct:   336 KKYAQKDDIAVWQKLSDKSCYDKIAKNMEAYPPKCDDSIEPDSAWYTPLRPCVVAPTPKV 395

Query:   166 KGEYAVGTIPKWPQRLTKAPSRALVMKNGY-DVFEADSRRWRRRVAYYKNTLNVKLGTPA 224
             K +  +G+IPKWP+RL  AP R   +  G  +  + D  +W+ RV +YK  L   LGT  
Sbjct:   396 K-KSGLGSIPKWPERLHVAPERIGDVHGGSANSLKHDDGKWKNRVKHYKKVLPA-LGTDK 453

Query:   225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYP 284
             IRN+MDMN  +GGF+AAL  DP+WVMNVV +  +++L V++DRGLIG YHDWCE FSTYP
Sbjct:   454 IRNVMDMNTVYGGFSAALIEDPIWVMNVVSSYSANSLPVVFDRGLIGTYHDWCEAFSTYP 513

Query:   285 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIA 344
             RTYDL+H+  + +L        + C +  +++EMDR+LRP G V++R+S   +D ++ +A
Sbjct:   514 RTYDLLHLDSLFTL------ESHRCEMKYILLEMDRILRPSGYVIIRESSYFMDAITTLA 567

Query:   345 NTVRWTAAVHDKEPGSNGREKILVATKSLW 374
               +RW+    + E      EKILV  K LW
Sbjct:   568 KGIRWSCRREETEYAVKS-EKILVCQKKLW 596

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2041031 AT2G43200 [Arabidopsis thaliana (taxid:3702)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 171/389 (43%), Positives = 234/389 (60%)

Query:     1 MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
             +L+  ILT+S APRD H+AQ+QFALERG+PA + +L T +LP+P+ SFD+VHCSRCL+ +
Sbjct:   231 LLNYKILTMSIAPRDIHEAQVQFALERGLPAMLGVLSTYKLPYPSRSFDMVHCSRCLVNW 290

Query:    61 TAYNATYLIEVDRLLRPGGYLVISGPPV----QWPKQDKEWADLQA-------VARALCY 109
             T+Y+  YL+EVDR+LRP GY V+SGPPV    ++  Q ++  +LQ        V R LC+
Sbjct:   291 TSYDGLYLMEVDRVLRPEGYWVLSGPPVASRVKFKNQKRDSKELQNQMEKLNDVFRRLCW 350

Query:   110 ELIAVDGNTVIWKKPVGE-SCLSNQNEFGLE-LCDESDDPNYAWYFKLKKCVSGTSSVKG 167
             E IA     VIW+KP     C           LC  SD P+ AWY +++ C++    V  
Sbjct:   351 EKIAESYPVVIWRKPSNHLQCRKRLKALKFPGLCSSSD-PDAAWYKEMEPCITPLPDVND 409

Query:   168 EYAVGTIPKWPQRLTKAPSRALVMKNGYDV--FEADSRRWRRRVAYYKNTLNVKLGTPAI 225
                   +  WP+RL   P        G  +  F+AD+  W+RRV YY       L     
Sbjct:   410 TNKT-VLKNWPERLNHVPRMKTGSIQGTTIAGFKADTNLWQRRVLYYDTKFKF-LSNGKY 467

Query:   226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPAR-KSSTLSVIYDRGLIGVYHDWCEPFSTYP 284
             RN++DMNA  GGFAAAL   P+WVMNVVP   K +TL V+YDRGLIG Y +WCE  STYP
Sbjct:   468 RNVIDMNAGLGGFAAALIKYPMWVMNVVPFDLKPNTLGVVYDRGLIGTYMNWCEALSTYP 527

Query:   285 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIA 344
             RTYDLIH +G+ SL  +       C +VD+++EM R+LRPEG V++RD  +V+ KV  I 
Sbjct:   528 RTYDLIHANGVFSLYLD------KCDIVDILLEMQRILRPEGAVIIRDRFDVLVKVKAIT 581

Query:   345 NTVRWTAAVHDKEPGSNGREKILVATKSL 373
             N +RW   ++ ++        IL+   S+
Sbjct:   582 NQMRWNGTMYPEDNSVFDHGTILIVDNSI 610

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2063947 AT2G39750 [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 160/383 (41%), Positives = 231/383 (60%)

Query:     1 MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
             +LS +++T+S AP+D H+ QIQFALERG+PA  A   TRRL +P+ +FD++HCSRC I +
Sbjct:   320 LLSRDVMTMSVAPKDVHENQIQFALERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRINW 379

Query:    61 TAYNATYLIEVDRLLRPGGYLVISGPPV--QWPKQDKEWADLQAVARALCYELIAVDGNT 118
             T  +   L+E++R+LR GGY   +  PV    P  +++W ++  +  +LC++L+  +G  
Sbjct:   380 TRDDGILLLEINRMLRAGGYFAWAAQPVYKHEPALEEQWTEMLNLTISLCWKLVKKEGYV 439

Query:   119 VIWKKPVGESC-LSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKW 177
              IW+KP    C LS +      LCDESDDP+  WY  LK C+S     KG Y  G +P W
Sbjct:   440 AIWQKPFNNDCYLSREAGTKPPLCDESDDPDNVWYTNLKPCISRIPE-KG-YG-GNVPLW 496

Query:   178 PQRLTKAPSRALVMK-NGY----DVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMN 232
             P RL   P R   +K + Y    ++F+A+S+ W   +  Y   L  K     +RN++DM 
Sbjct:   497 PARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEIIGGYVRALKWK--KMKLRNVLDMR 554

Query:   233 AFFGGFAAALTSDPV--WVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLI 290
             A FGGFAAAL    +  WV++VVP    +TL VIYDRGL+GV HDWCEPF TYPRTYD +
Sbjct:   555 AGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDFL 614

Query:   291 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWT 350
             H SG+ S+       +  C +  +++EMDR+LRP G   +RDS +V+D++  I   + W 
Sbjct:   615 HASGLFSI------ERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDEIQEITKAMGWH 668

Query:   351 AAVHDKEPGSNGREKILVATKSL 373
              ++ D   G +   +IL   K L
Sbjct:   669 TSLRDTSEGPHASYRILTCEKRL 691

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93W95	PMTD_ARATH	2, ., 1, ., 1, ., -	0.8201	1.0	0.63	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XIV000203 hypothetical protein (594 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	378
pfam03141	506	pfam03141, Methyltransf_29, Putative S-adenosyl-L-	0.0
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	1e-06
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	0.002

>gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase

 Score =  564 bits (1455), Expect = 0.0
 Identities = 193/378 (51%), Positives = 260/378 (68%), Gaps = 13/378 (3%)

Query: 1   MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 60
           +LS ++LT+SFAP+D H+AQ+QFALERG+PA + +LGTRRLP+P+ SFD+ HCSRCLIP+
Sbjct: 135 LLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPSRSFDMAHCSRCLIPW 194

Query: 61  TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQD---KEWADLQAVARALCYELIAVDGN 117
            A +   L+EVDR+LRPGGY V+SGPPV    ++   +EW  ++A+A++LC++L+A  G+
Sbjct: 195 HANDGILLLEVDRVLRPGGYFVLSGPPVYARDEEDLQEEWKAMEALAKSLCWKLVAKKGD 254

Query: 118 TVIWKKPVGESC-LSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPK 176
             IW+KPV  SC    +      LC +SDDP+ AWY  ++ C++    V  E   G + K
Sbjct: 255 IAIWQKPVNNSCYNKREPGKKPPLCKDSDDPDAAWYVPMEACITPLPEVSHEVGGGWLEK 314

Query: 177 WPQRLTKAPSRA---LVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNA 233
           WP+RLT  P R     +     + F+AD+  W+RRV+ YK  L + +    +RN+MDMNA
Sbjct: 315 WPERLTAVPPRLASGQIGGVSAEAFKADTELWKRRVSKYKRLLKLLIDKGRVRNVMDMNA 374

Query: 234 FFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVS 293
            FGGFAAAL  DPVWVMNVVP     TL VIYDRGLIG+YHDWCEPFSTYPRTYDL+H  
Sbjct: 375 GFGGFAAALIDDPVWVMNVVPVDSPDTLPVIYDRGLIGIYHDWCEPFSTYPRTYDLLHAD 434

Query: 294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAV 353
            + SL       K  C+L D+++EMDR+LRP G V++RD  +V+DKV +IA  +RW   +
Sbjct: 435 HLFSLY------KKRCNLEDILLEMDRILRPGGAVIIRDDVDVLDKVKKIAKAMRWEVRI 488

Query: 354 HDKEPGSNGREKILVATK 371
            D E G +  EKIL+A K
Sbjct: 489 TDTEDGPHDPEKILIAQK 506

This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 15 DSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRL 74
          D     +  A +R    FV       LPFP  SFD+V  S  ++         L E+ R+
Sbjct: 26 DLSPEMLALARKRAPRKFVVG-DAEDLPFPDESFDVVVSS-LVLHHLPDPERALREIARV 83

Query: 75 LRPGGYLVI 83
          L+PGG LVI
Sbjct: 84 LKPGGKLVI 92

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 40  RLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVI---SGPPVQWPKQ 93
            LPFP  SFD V  S  L   T  +   L E+ R+L+PGG L++   S P     ++
Sbjct: 112 NLPFPDNSFDAVTISFGLRNVTDIDK-ALKEMYRVLKPGGRLLVLEFSKPDNPVLRK 167

Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	378
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	100.0
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	100.0
PLN02336	475	phosphoethanolamine N-methyltransferase	99.5
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.45
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.31
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.29
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.22
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.16
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.08
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.91
PLN02244	340	tocopherol O-methyltransferase	98.82
KOG4300	252	consensus Predicted methyltransferase [General fun	98.81
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.77
PRK05785	226	hypothetical protein; Provisional	98.73
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.68
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.66
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.64
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.57
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.55
PLN02336	475	phosphoethanolamine N-methyltransferase	98.54
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.54
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.53
PLN02490	340	MPBQ/MSBQ methyltransferase	98.53
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.52
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.51
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.48
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.47
PRK08317	241	hypothetical protein; Provisional	98.46
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.45
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.45
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.42
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.41
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.37
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.33
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.33
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.3
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.29
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.28
PRK12335	287	tellurite resistance protein TehB; Provisional	98.26
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.25
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.25
PLN02244	340	tocopherol O-methyltransferase	98.24
PRK11207	197	tellurite resistance protein TehB; Provisional	98.23
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.2
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.19
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.18
PRK06922	677	hypothetical protein; Provisional	98.17
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.17
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.16
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.15
PRK08317	241	hypothetical protein; Provisional	98.15
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.15
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.14
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.13
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.13
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.12
PRK11207	197	tellurite resistance protein TehB; Provisional	98.12
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.1
KOG3010	261	consensus Methyltransferase [General function pred	98.1
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.1
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.09
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.07
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.07
PRK05785	226	hypothetical protein; Provisional	98.06
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.06
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.06
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.05
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.04
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.04
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.03
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.03
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.01
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.01
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.01
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.0
PRK06202	232	hypothetical protein; Provisional	98.0
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.0
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.0
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.99
PRK14968	188	putative methyltransferase; Provisional	97.97
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.94
PRK12335	287	tellurite resistance protein TehB; Provisional	97.94
TIGR00740	239	methyltransferase, putative. A simple BLAST search	97.94
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.93
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.93
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	97.9
TIGR00452	314	methyltransferase, putative. Known examples to dat	97.9
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	97.89
TIGR00438	188	rrmJ cell division protein FtsJ.	97.87
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.85
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	97.8
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.8
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.77
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	97.76
PTZ00146	293	fibrillarin; Provisional	97.71
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	97.71
KOG3010	261	consensus Methyltransferase [General function pred	97.7
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.69
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.68
PRK04266	226	fibrillarin; Provisional	97.68
PLN03075	296	nicotianamine synthase; Provisional	97.67
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.65
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	97.64
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.63
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	97.61
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.61
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.59
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.56
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.56
PRK06202	232	hypothetical protein; Provisional	97.53
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	97.53
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.53
PLN02490	340	MPBQ/MSBQ methyltransferase	97.52
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.52
TIGR03438	301	probable methyltransferase. This model represents	97.52
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.52
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.51
PRK06922	677	hypothetical protein; Provisional	97.5
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	97.5
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	97.48
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.48
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.47
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	97.47
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.46
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	97.46
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.44
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.42
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.41
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	97.41
KOG2940	325	consensus Predicted methyltransferase [General fun	97.37
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	97.36
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.35
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.35
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	97.34
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.33
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.32
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.31
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.31
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	97.31
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	97.3
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	97.29
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.28
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.28
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	97.28
KOG1331	293	consensus Predicted methyltransferase [General fun	97.28
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	97.26
COG2890	280	HemK Methylase of polypeptide chain release factor	97.26
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	97.24
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	97.24
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.23
PRK14967	223	putative methyltransferase; Provisional	97.23
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.22
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.22
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.21
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	97.21
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	97.21
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	97.21
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.21
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	97.2
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.2
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	97.19
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.16
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.16
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	97.16
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.15
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.15
PRK04266	226	fibrillarin; Provisional	97.14
PRK04457	262	spermidine synthase; Provisional	97.11
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.09
PTZ00146	293	fibrillarin; Provisional	97.08
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.04
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.04
TIGR03438	301	probable methyltransferase. This model represents	97.03
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.02
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.0
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.99
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	96.98
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	96.98
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	96.97
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	96.96
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	96.93
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	96.9
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	96.89
PRK14967	223	putative methyltransferase; Provisional	96.88
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	96.87
PRK13255	218	thiopurine S-methyltransferase; Reviewed	96.79
KOG4300	252	consensus Predicted methyltransferase [General fun	96.78
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.75
PRK07402	196	precorrin-6B methylase; Provisional	96.71
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	96.67
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	96.62
PLN02585	315	magnesium protoporphyrin IX methyltransferase	96.56
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	96.55
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	96.52
COG4123	248	Predicted O-methyltransferase [General function pr	96.51
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	96.48
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	96.47
PRK13256	226	thiopurine S-methyltransferase; Reviewed	96.47
PRK14968	188	putative methyltransferase; Provisional	96.46
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.45
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	96.44
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	96.41
PRK14902	444	16S rRNA methyltransferase B; Provisional	96.41
COG1041	347	Predicted DNA modification methylase [DNA replicat	96.41
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	96.4
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	96.36
PRK10901	427	16S rRNA methyltransferase B; Provisional	96.32
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	96.28
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	96.26
TIGR00438	188	rrmJ cell division protein FtsJ.	96.25
PRK14901	434	16S rRNA methyltransferase B; Provisional	96.24
PRK14904	445	16S rRNA methyltransferase B; Provisional	96.13
KOG2352	482	consensus Predicted spermine/spermidine synthase [	96.11
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	96.01
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	95.98
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	95.9
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	95.89
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	95.87
KOG2361	264	consensus Predicted methyltransferase [General fun	95.85
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	95.81
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	95.8
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	95.78
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	95.76
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	95.72
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	95.7
PRK14903	431	16S rRNA methyltransferase B; Provisional	95.67
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	95.64
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	95.62
PRK01581	374	speE spermidine synthase; Validated	95.57
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	95.57
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	95.54
PRK00811	283	spermidine synthase; Provisional	95.51
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	95.49
PRK10901	427	16S rRNA methyltransferase B; Provisional	95.35
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	95.28
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	95.25
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	95.25
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	95.24
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	95.22
PRK14901	434	16S rRNA methyltransferase B; Provisional	95.21
PLN02585	315	magnesium protoporphyrin IX methyltransferase	95.21
PLN02232	160	ubiquinone biosynthesis methyltransferase	95.16
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	95.07
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	95.04
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	94.99
PRK01581	374	speE spermidine synthase; Validated	94.95
PRK00811	283	spermidine synthase; Provisional	94.9
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	94.87
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	94.76
PRK14904	445	16S rRNA methyltransferase B; Provisional	94.72
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	94.71
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	94.69
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	94.61
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	94.59
PRK07402	196	precorrin-6B methylase; Provisional	94.58
PHA03411	279	putative methyltransferase; Provisional	94.55
PRK14902	444	16S rRNA methyltransferase B; Provisional	94.49
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	94.46
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	94.44
COG2521	287	Predicted archaeal methyltransferase [General func	94.4
PLN03075	296	nicotianamine synthase; Provisional	94.37
PRK03612	521	spermidine synthase; Provisional	94.37
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	94.27
KOG1271	227	consensus Methyltransferases [General function pre	94.26
PRK14903	431	16S rRNA methyltransferase B; Provisional	94.25
PHA03411	279	putative methyltransferase; Provisional	94.17
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	94.12
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	94.03
PRK04457	262	spermidine synthase; Provisional	93.97
KOG2904	328	consensus Predicted methyltransferase [General fun	93.91
KOG1271	227	consensus Methyltransferases [General function pre	93.88
PLN02366	308	spermidine synthase	93.87
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	93.74
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	93.73
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	93.57
PHA03412	241	putative methyltransferase; Provisional	93.54
PRK13699	227	putative methylase; Provisional	93.44
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	93.28
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	93.27
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	93.19
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	93.19
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	93.13
PRK03612	521	spermidine synthase; Provisional	93.12
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	93.01
PF03269	177	DUF268: Caenorhabditis protein of unknown function	92.93
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	92.9
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	92.87
KOG2361	264	consensus Predicted methyltransferase [General fun	92.82
PLN02476	278	O-methyltransferase	92.31
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	92.3
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	92.29
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	92.26
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	91.85
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	91.8
PLN02366	308	spermidine synthase	91.63
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	91.33
COG4122	219	Predicted O-methyltransferase [General function pr	91.27
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	90.88
KOG2899	288	consensus Predicted methyltransferase [General fun	90.77
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	90.48
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	90.31
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	90.27
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	90.17
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	90.12
PLN02823	336	spermine synthase	89.43
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	89.17
PRK04148	134	hypothetical protein; Provisional	88.86
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	88.7
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	88.45
PRK11524	284	putative methyltransferase; Provisional	88.4
PHA03412	241	putative methyltransferase; Provisional	88.28
KOG3201	201	consensus Uncharacterized conserved protein [Funct	87.79
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	87.45
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	87.37
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	87.18
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	86.28
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	86.17
COG4123	248	Predicted O-methyltransferase [General function pr	86.05
PLN02823	336	spermine synthase	85.98
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	85.35
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	85.07
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	84.93
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	84.83
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	84.62
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	84.18
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	83.97
PLN02672	1082	methionine S-methyltransferase	83.39
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	83.17
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	81.92
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	81.82
PRK00536	262	speE spermidine synthase; Provisional	80.99
KOG2940	325	consensus Predicted methyltransferase [General fun	80.78
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	80.75
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	80.62

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=100.00  E-value=4.6e-124  Score=949.96  Aligned_cols=365  Identities=52%  Similarity=1.012  Sum_probs=352.4

Q ss_pred             CCCCCeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068            1 MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY   80 (378)
Q Consensus         1 l~~~~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~   80 (378)
                      |++|||+|||+||+|.|++|+|+|+|||+|+.+.++.+++||||+++||+|||++|+++|...++.+|.|++||||||||
T Consensus       135 l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGy  214 (506)
T PF03141_consen  135 LLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGY  214 (506)
T ss_pred             HhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCce
Confidence            68999999999999999999999999999999999999999999999999999999999999888999999999999999


Q ss_pred             EEEEcCCCCCC-cc--chHHHHHHHHHHHhceeeeccccceEEEeCCCCcccccccCC-CCCCCCCCCCCCCcccccccc
Q 017068           81 LVISGPPVQWP-KQ--DKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNE-FGLELCDESDDPNYAWYFKLK  156 (378)
Q Consensus        81 lvis~pp~~~~-~~--~~~w~~l~~l~~~lcw~~~~~~~~~~iw~Kp~~~~c~~~~~~-~~~~~c~~~~~~~~~wy~~~~  156 (378)
                      |++|+||++.+ ..  .+.|++|++++++|||++++++++++|||||.+++||.+|+. +.||+|++++|||++||+||+
T Consensus       215 fv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~  294 (506)
T PF03141_consen  215 FVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLE  294 (506)
T ss_pred             EEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchh
Confidence            99999999943 22  245999999999999999999999999999999999999874 899999999999999999999


Q ss_pred             cccccccCCCcccccCCCCCCCccccCCCCccee---cccCccccccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCC
Q 017068          157 KCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALV---MKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNA  233 (378)
Q Consensus       157 ~Ci~~~p~~~~~~~~~~~~~WP~rl~~~p~~l~~---~g~~~~~F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~a  233 (378)
                      +||+|+|++.++.+++++++||+||+++|+||..   .|++.+.|.+|+++|+++|++|++.+...+++++|||||||||
T Consensus       295 ~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnA  374 (506)
T PF03141_consen  295 ACITPLPEVSSEIAGGWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNA  374 (506)
T ss_pred             hhcCcCCcccccccccCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecc
Confidence            9999999988899999999999999999999876   8899999999999999999999998877899999999999999


Q ss_pred             cceeeeeeccCCCeeEEEeccCCCCcchHHHHhhccccccccccccCCCCCCccccccccCccccccCCCCCCCCCCccc
Q 017068          234 FFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVD  313 (378)
Q Consensus       234 g~g~faa~L~~~~vwvmnv~p~~~~~~l~~i~eRGlig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~  313 (378)
                      |+|||||||.++|||||||||.+++|||++||||||||+||||||+|||||||||||||+++||.|+      +||+|++
T Consensus       375 g~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~------~rC~~~~  448 (506)
T PF03141_consen  375 GYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYK------DRCEMED  448 (506)
T ss_pred             cccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhc------ccccHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998      8999999


Q ss_pred             eeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEEEEe
Q 017068          314 LMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATK  371 (378)
Q Consensus       314 ~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K  371 (378)
                      ||+||||||||||++||||+.+++++|++|+++|+|++.++|+|+|+.++||||+|||
T Consensus       449 illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K  506 (506)
T PF03141_consen  449 ILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK  506 (506)
T ss_pred             HHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence            9999999999999999999999999999999999999999999999999999999998

; GO: 0008168 methyltransferase activity

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=100.00  E-value=4e-44  Score=365.27  Aligned_cols=198  Identities=20%  Similarity=0.314  Sum_probs=169.4

Q ss_pred             cccccccccccCCCcccccCCCCCCCcccc-----CCCCc-cee-ccc--------CccccccchHHHHHHHHHHHHHhh
Q 017068          153 FKLKKCVSGTSSVKGEYAVGTIPKWPQRLT-----KAPSR-ALV-MKN--------GYDVFEADSRRWRRRVAYYKNTLN  217 (378)
Q Consensus       153 ~~~~~Ci~~~p~~~~~~~~~~~~~WP~rl~-----~~p~~-l~~-~g~--------~~~~F~~d~~~w~~~v~~Y~~~~~  217 (378)
                      .+...|++|+|.     +|+.|.+||++.+     ++|+. |++ ++.        ..-.|+.++++|+++|.+|+++|.
T Consensus        32 ~~~~~CLVp~P~-----gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~  106 (506)
T PF03141_consen   32 EERLRCLVPPPK-----GYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIA  106 (506)
T ss_pred             CCCCccccCCCc-----cCCCCCCCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCCHHHHHHHHH
Confidence            456789999998     7999999999995     46666 654 432        234599999999999999999998


Q ss_pred             hhc----CCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc---ccccccccccCCCCCCcccc
Q 017068          218 VKL----GTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL---IGVYHDWCEPFSTYPRTYDL  289 (378)
Q Consensus       218 ~~~----~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl---ig~~~~w~~~f~typrtyDl  289 (378)
                      +++    ..|+||++||+|||+|||||+|++++|.||+++|.+.+ +|+||++|||+   +|++.+.+.|||  .+||||
T Consensus       107 ~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp--~~~fDm  184 (506)
T PF03141_consen  107 EMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFP--SNAFDM  184 (506)
T ss_pred             HHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCC--ccchhh
Confidence            776    45899999999999999999999999999999999998 99999999999   566666776554  399999


Q ss_pred             ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC----------HHHHHHHHHHHhcCCceEEEecCCCC
Q 017068          290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS----------PEVIDKVSRIANTVRWTAAVHDKEPG  359 (378)
Q Consensus       290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~----------~~~~~~~~~~~~~l~W~~~~~~~~~~  359 (378)
                      +||++|+..|+    +.+    +.+|+|+|||||||||||++.+          .+++++|++++++|||+..+...   
T Consensus       185 vHcsrc~i~W~----~~~----g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~~---  253 (506)
T PF03141_consen  185 VHCSRCLIPWH----PND----GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEKG---  253 (506)
T ss_pred             hhcccccccch----hcc----cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheeeC---
Confidence            99999999997    122    5899999999999999999964          46899999999999999987532   


Q ss_pred             CCCCeEEEEEEecC
Q 017068          360 SNGREKILVATKSL  373 (378)
Q Consensus       360 ~~~~e~~l~~~K~~  373 (378)
                           .+.|.||+.
T Consensus       254 -----~~aIwqKp~  262 (506)
T PF03141_consen  254 -----DTAIWQKPT  262 (506)
T ss_pred             -----CEEEEeccC
Confidence                 388999974

; GO: 0008168 methyltransferase activity

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.50  E-value=3.7e-14  Score=146.16  Aligned_cols=77  Identities=14%  Similarity=0.207  Sum_probs=59.8

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC---CCeEEEEcccC--CCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTR--RLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg---~~~~~~v~dae--~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPG   78 (378)
                      .|+++++     ++.+++.|+++.   ..+.+..+|+.  .+|+++++||+|+|..+++|+.+.. ..+++++.|+||||
T Consensus        61 ~v~giD~-----s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~g  135 (475)
T PLN02336         61 QVIALDF-----IESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVG  135 (475)
T ss_pred             EEEEEeC-----CHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCC
Confidence            4566655     457888776542   23566677764  6889999999999999999987753 58999999999999


Q ss_pred             cEEEEEcC
Q 017068           79 GYLVISGP   86 (378)
Q Consensus        79 G~lvis~p   86 (378)
                      |++++...
T Consensus       136 G~l~~~d~  143 (475)
T PLN02336        136 GYIFFRES  143 (475)
T ss_pred             eEEEEEec
Confidence            99998644

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.45  E-value=9e-14  Score=132.66  Aligned_cols=72  Identities=31%  Similarity=0.367  Sum_probs=64.1

Q ss_pred             CCCChHHHHHHHHHcCCC-----eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEc
Q 017068           13 PRDSHKAQIQFALERGIP-----AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        13 p~D~se~~vq~A~erg~~-----~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      ..|+|+.|+..|++|...     +.+.++|+++|||||+|||+|+|+++++++++.+ ++|+|+.|||||||++++..
T Consensus        80 ~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~-~aL~E~~RVlKpgG~~~vle  156 (238)
T COG2226          80 GLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDID-KALKEMYRVLKPGGRLLVLE  156 (238)
T ss_pred             EEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHH-HHHHHHHHhhcCCeEEEEEE
Confidence            345568999999998544     6789999999999999999999999999999888 99999999999999998753

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.31  E-value=1.4e-12  Score=102.89  Aligned_cols=69  Identities=32%  Similarity=0.411  Sum_probs=56.9

Q ss_pred             CCChHHHHHHHHHcCCC--eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEE
Q 017068           14 RDSHKAQIQFALERGIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVI   83 (378)
Q Consensus        14 ~D~se~~vq~A~erg~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvi   83 (378)
                      .|.++.+++.|+++...  ..+..++.+.+||++++||+|+|..+++|+.+.. .+++|+.|+|||||++++
T Consensus        25 ~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~-~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   25 IDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPE-AALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             EES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHH-HHHHHHHHHEEEEEEEEE
T ss_pred             EeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHH-HHHHHHHHHcCcCeEEeC
Confidence            34457899999998543  4588899999999999999999999998884444 999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.29  E-value=3.1e-12  Score=121.59  Aligned_cols=71  Identities=34%  Similarity=0.416  Sum_probs=55.0

Q ss_pred             CCChHHHHHHHHHcC-----CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEc
Q 017068           14 RDSHKAQIQFALERG-----IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        14 ~D~se~~vq~A~erg-----~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      .|+|+.|++.|+++.     .++.+.++|+++|||+|++||+|+|+++++++++.. ++++|++|||||||+|++..
T Consensus        78 vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~-~~l~E~~RVLkPGG~l~ile  153 (233)
T PF01209_consen   78 VDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRE-RALREMYRVLKPGGRLVILE  153 (233)
T ss_dssp             EES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHH-HHHHHHHHHEEEEEEEEEEE
T ss_pred             ecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHH-HHHHHHHHHcCCCeEEEEee
Confidence            345579999999862     257889999999999999999999999999998877 99999999999999999754

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.22  E-value=1.9e-11  Score=109.19  Aligned_cols=72  Identities=24%  Similarity=0.169  Sum_probs=62.9

Q ss_pred             CCChHHHHHHHHHcC--------CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEc
Q 017068           14 RDSHKAQIQFALERG--------IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        14 ~D~se~~vq~A~erg--------~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      .|.|+.|++.|+++.        ..+.+.++|++++||++++||+|+++++++|+.+.. .+++|++|+|||||+|++..
T Consensus         3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~-~~l~ei~rvLkpGG~l~i~d   81 (160)
T PLN02232          3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRL-RAMKEMYRVLKPGSRVSILD   81 (160)
T ss_pred             EcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHH-HHHHHHHHHcCcCeEEEEEE
Confidence            478899999997652        136788999999999999999999999998888776 99999999999999999865


Q ss_pred             C
Q 017068           86 P   86 (378)
Q Consensus        86 p   86 (378)
                      .
T Consensus        82 ~   82 (160)
T PLN02232         82 F   82 (160)
T ss_pred             C
Confidence            4

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.16  E-value=6.6e-11  Score=113.50  Aligned_cols=76  Identities=22%  Similarity=0.276  Sum_probs=63.8

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcC----CC----eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcc
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERG----IP----AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLL   75 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg----~~----~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVL   75 (378)
                      ..|+.+||.|     .|+..+++|.    +.    +.+..+|+|.|||||++||+.+.++.+.+|++.+ ++|+|++|||
T Consensus       131 ~~V~v~Dinp-----~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~-k~l~EAYRVL  204 (296)
T KOG1540|consen  131 SKVTVLDINP-----HMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQ-KALREAYRVL  204 (296)
T ss_pred             ceEEEEeCCH-----HHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHH-HHHHHHHHhc
Confidence            4566666665     7777766653    32    5678889999999999999999999999999999 9999999999


Q ss_pred             cCCcEEEEEc
Q 017068           76 RPGGYLVISG   85 (378)
Q Consensus        76 kPGG~lvis~   85 (378)
                      ||||+|.+-.
T Consensus       205 KpGGrf~cLe  214 (296)
T KOG1540|consen  205 KPGGRFSCLE  214 (296)
T ss_pred             CCCcEEEEEE
Confidence            9999998754

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.08  E-value=2e-10  Score=110.54  Aligned_cols=76  Identities=22%  Similarity=0.255  Sum_probs=64.2

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC--------CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhccc
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG--------IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLR   76 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg--------~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLk   76 (378)
                      .|++++++     ++|++.|+++.        ..+.+..+|++.+||++++||+|+|+++++|++++. .+++|+.|+||
T Consensus       100 ~V~gvD~S-----~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~-~~l~ei~rvLk  173 (261)
T PLN02233        100 KVMGLDFS-----SEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRL-KAMQEMYRVLK  173 (261)
T ss_pred             EEEEEECC-----HHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHH-HHHHHHHHHcC
Confidence            45665555     68999987652        246788899999999999999999999999988776 99999999999


Q ss_pred             CCcEEEEEcC
Q 017068           77 PGGYLVISGP   86 (378)
Q Consensus        77 PGG~lvis~p   86 (378)
                      |||+|++...
T Consensus       174 pGG~l~i~d~  183 (261)
T PLN02233        174 PGSRVSILDF  183 (261)
T ss_pred             cCcEEEEEEC
Confidence            9999998754

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.91  E-value=1e-10  Score=92.20  Aligned_cols=90  Identities=21%  Similarity=0.258  Sum_probs=66.0

Q ss_pred             EecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhhcccc---ccccccccCCCCCCccccccccCccccccCCC
Q 017068          229 MDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGLIG---VYHDWCEPFSTYPRTYDLIHVSGIESLIKNPG  303 (378)
Q Consensus       229 lDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eRGlig---~~~~w~~~f~typrtyDliH~~~~~~~~~~~~  303 (378)
                      ||+|||.|.++..|.++ +.   +|+..|.+ .+++.+-++.--.   ..+.=-+.+|..+++||+|++..+|..+.   
T Consensus         1 LdiG~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~---   74 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGA---SVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE---   74 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTC---EEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS---
T ss_pred             CEecCcCCHHHHHHHhccCC---EEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc---
Confidence            79999999999999988 66   67777766 7787777766532   22221233544459999999999988653   


Q ss_pred             CCCCCCCccceeeeecccccCCCeEEE
Q 017068          304 SNKNSCSLVDLMVEMDRMLRPEGTVVV  330 (378)
Q Consensus       304 ~~~~~c~~~~~l~EmDRiLRPgG~~ii  330 (378)
                            +...++-|+.|+|||||+++|
T Consensus        75 ------~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   75 ------DPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             ------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             ------CHHHHHHHHHHHcCcCeEEeC
Confidence                  347899999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02244 tocopherol O-methyltransferase

Probab=98.82  E-value=9.4e-09  Score=102.59  Aligned_cols=77  Identities=19%  Similarity=0.275  Sum_probs=64.6

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccC
Q 017068            4 ENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP   77 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkP   77 (378)
                      ..|++++++     +.|++.|+++    ++  .+.+.++|+..+||++++||+|+|..+++|+.+.. .+++|+.|+|||
T Consensus       142 ~~v~gvD~s-----~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~-~~l~e~~rvLkp  215 (340)
T PLN02244        142 ANVKGITLS-----PVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKR-KFVQELARVAAP  215 (340)
T ss_pred             CEEEEEECC-----HHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHH-HHHHHHHHHcCC
Confidence            356666554     6788777664    43  46788999999999999999999999999998877 999999999999


Q ss_pred             CcEEEEEcC
Q 017068           78 GGYLVISGP   86 (378)
Q Consensus        78 GG~lvis~p   86 (378)
                      ||+|+++..
T Consensus       216 GG~lvi~~~  224 (340)
T PLN02244        216 GGRIIIVTW  224 (340)
T ss_pred             CcEEEEEEe
Confidence            999999764

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.81  E-value=1e-08  Score=96.05  Aligned_cols=96  Identities=22%  Similarity=0.289  Sum_probs=68.1

Q ss_pred             CChHHHHHHHHHc-----CCCeE-EEEcccCCCC-CCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcCC
Q 017068           15 DSHKAQIQFALER-----GIPAF-VAMLGTRRLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP   87 (378)
Q Consensus        15 D~se~~vq~A~er-----g~~~~-~~v~dae~LP-fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~pp   87 (378)
                      |.++.|-++|.++     -..+. |+++++++|| ++|+|+|.|+|.+|+....++. +.|+|+.|+|||||.+++-.+-
T Consensus       106 Dpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~-k~L~e~~rlLRpgG~iifiEHv  184 (252)
T KOG4300|consen  106 DPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPV-KQLNEVRRLLRPGGRIIFIEHV  184 (252)
T ss_pred             CCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHH-HHHHHHHHhcCCCcEEEEEecc
Confidence            3345555554432     33444 8899999999 9999999999999999877777 9999999999999999987651


Q ss_pred             CCCCccchHHHHHHHHHHHhceeeecc
Q 017068           88 VQWPKQDKEWADLQAVARALCYELIAV  114 (378)
Q Consensus        88 ~~~~~~~~~w~~l~~l~~~lcw~~~~~  114 (378)
                         .+++.-|+.+-+-...-.|+..+.
T Consensus       185 ---a~~y~~~n~i~q~v~ep~~~~~~d  208 (252)
T KOG4300|consen  185 ---AGEYGFWNRILQQVAEPLWHLESD  208 (252)
T ss_pred             ---cccchHHHHHHHHHhchhhheecc
Confidence               233445776443322234554433

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.77  E-value=1.3e-08  Score=96.35  Aligned_cols=76  Identities=18%  Similarity=0.288  Sum_probs=62.7

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS   84 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis   84 (378)
                      .|++++     .|+.|++.|+++.....+..+|.+.+||++++||+|+|+.+++ |..+...++.|+.|+|||||.++++
T Consensus        66 ~v~~~D-----~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~-~~~d~~~~l~~~~~~Lk~gG~l~~~  139 (251)
T PRK10258         66 QVTALD-----LSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQ-WCGNLSTALRELYRVVRPGGVVAFT  139 (251)
T ss_pred             eEEEEE-----CCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhh-hcCCHHHHHHHHHHHcCCCeEEEEE
Confidence            455555     4569999999986555677889999999999999999998765 5444449999999999999999998


Q ss_pred             cC
Q 017068           85 GP   86 (378)
Q Consensus        85 ~p   86 (378)
                      .+
T Consensus       140 ~~  141 (251)
T PRK10258        140 TL  141 (251)
T ss_pred             eC
Confidence            76

>PRK05785 hypothetical protein; Provisional

Probab=98.73  E-value=2.2e-08  Score=94.52  Aligned_cols=63  Identities=22%  Similarity=0.199  Sum_probs=53.8

Q ss_pred             CCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068           13 PRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus        13 p~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      ..|.|++|++.|+++.   .+.+++++.+||++++||+|+|+++++|+.+.+ .+++|+.|||||.+
T Consensus        79 gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~-~~l~e~~RvLkp~~  141 (226)
T PRK05785         79 ALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHASDNIE-KVIAEFTRVSRKQV  141 (226)
T ss_pred             EECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhccCCHH-HHHHHHHHHhcCce
Confidence            3445679999998874   346789999999999999999999998887777 99999999999954

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.68  E-value=3.6e-08  Score=93.87  Aligned_cols=73  Identities=22%  Similarity=0.234  Sum_probs=60.5

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS   84 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis   84 (378)
                      .|++++++     +.|++.|+++++  .+..+|++.++ ++++||+|+|+.+++|++++. .+++++.|+|||||+|++.
T Consensus        55 ~v~gvD~s-----~~~~~~a~~~~~--~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~-~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         55 VIEALDSS-----PEMVAAARERGV--DARTGDVRDWK-PKPDTDVVVSNAALQWVPEHA-DLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             EEEEEECC-----HHHHHHHHhcCC--cEEEcChhhCC-CCCCceEEEEehhhhhCCCHH-HHHHHHHHhCCCCcEEEEE
Confidence            45666655     699999998864  56778888775 678999999999988877666 9999999999999999998


Q ss_pred             cC
Q 017068           85 GP   86 (378)
Q Consensus        85 ~p   86 (378)
                      .+
T Consensus       126 ~~  127 (255)
T PRK14103        126 VP  127 (255)
T ss_pred             cC
Confidence            65

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.66  E-value=3.7e-08  Score=94.96  Aligned_cols=73  Identities=16%  Similarity=0.246  Sum_probs=61.2

Q ss_pred             CCChHHHHHHHHHcCC---CeEEEEcccCCCCCCCCceeEEEecCccccccC-ChHHHHHHHhhcccCCcEEEEEcC
Q 017068           14 RDSHKAQIQFALERGI---PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        14 ~D~se~~vq~A~erg~---~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~-~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .|+|+.|++.|+++..   .+.+..+|+..+||++++||+|++..+++|+.. +...+++++.|+|||||+|+++..
T Consensus        81 iD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098         81 VDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             EECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            3455799999998742   366788898899999999999999999999873 335999999999999999999865

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.64  E-value=2.1e-08  Score=99.82  Aligned_cols=71  Identities=15%  Similarity=0.134  Sum_probs=61.5

Q ss_pred             CChHHHHHHHHHcC----C--CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALERG----I--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~erg----~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.|+.+++.|+++.    .  .+.+..++++.+|+++++||+|+|..+++|+.++. .+++|+.|+|||||.++++..
T Consensus       160 D~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~~-~~L~~l~r~LkPGG~liist~  236 (322)
T PLN02396        160 DAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPA-EFCKSLSALTIPNGATVLSTI  236 (322)
T ss_pred             eCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhcCCHH-HHHHHHHHHcCCCcEEEEEEC
Confidence            44568888887652    1  46678889999999999999999999999999887 999999999999999999876

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.57  E-value=1.2e-07  Score=90.82  Aligned_cols=75  Identities=19%  Similarity=0.235  Sum_probs=61.3

Q ss_pred             eEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068            6 ILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY   80 (378)
Q Consensus         6 v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~   80 (378)
                      |+++++     ++.|++.|+++    +. .+.+..++.+.+|+++++||+|++..+++|+++.. .+++|+.|+|||||+
T Consensus       105 v~gvD~-----s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~-~~l~~~~r~LkpGG~  178 (272)
T PRK11873        105 VIGVDM-----TPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVINLSPDKE-RVFKEAFRVLKPGGR  178 (272)
T ss_pred             EEEECC-----CHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcccCCCCHH-HHHHHHHHHcCCCcE
Confidence            555554     46888888875    33 45677889999999999999999988887766666 899999999999999


Q ss_pred             EEEEcC
Q 017068           81 LVISGP   86 (378)
Q Consensus        81 lvis~p   86 (378)
                      |+++..
T Consensus       179 l~i~~~  184 (272)
T PRK11873        179 FAISDV  184 (272)
T ss_pred             EEEEEe
Confidence            999764

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.55  E-value=2.8e-07  Score=85.10  Aligned_cols=150  Identities=17%  Similarity=0.275  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccC--CCeeEEEeccCCCC-cchHH----HHhhcc--cccc
Q 017068          203 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKS-STLSV----IYDRGL--IGVY  273 (378)
Q Consensus       203 ~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~--~~vwvmnv~p~~~~-~~l~~----i~eRGl--ig~~  273 (378)
                      ..|++.+-.-.. +.+.+..+  ..|||+|||+|.++.++..  ...   .|+..|.. .++..    +-+.|+  +-.+
T Consensus        27 ~~~~~~~~d~l~-l~~~l~~g--~~VLDiGcGtG~~al~la~~~~~~---~V~giD~s~~~l~~A~~~~~~~~l~~i~~~  100 (187)
T PRK00107         27 ELWERHILDSLA-IAPYLPGG--ERVLDVGSGAGFPGIPLAIARPEL---KVTLVDSLGKKIAFLREVAAELGLKNVTVV  100 (187)
T ss_pred             HHHHHHHHHHHH-HHhhcCCC--CeEEEEcCCCCHHHHHHHHHCCCC---eEEEEeCcHHHHHHHHHHHHHcCCCCEEEE
Confidence            478877743222 22234433  4799999999998887653  233   55666665 55533    334454  3333


Q ss_pred             ccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEE
Q 017068          274 HDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       274 ~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~  353 (378)
                      +.-.+.++. ..+||+|-|.. +            .++..++-++-|+|||||.+++-........++++++.+-|.+..
T Consensus       101 ~~d~~~~~~-~~~fDlV~~~~-~------------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~  166 (187)
T PRK00107        101 HGRAEEFGQ-EEKFDVVTSRA-V------------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEE  166 (187)
T ss_pred             eccHhhCCC-CCCccEEEEcc-c------------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEee
Confidence            333334544 57999999853 1            234678889999999999999998888888999999999999754


Q ss_pred             --ecCCCCCCCCeEEEEEEec
Q 017068          354 --HDKEPGSNGREKILVATKS  372 (378)
Q Consensus       354 --~~~~~~~~~~e~~l~~~K~  372 (378)
                        .-+-+|-.+...+.|.+|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~  187 (187)
T PRK00107        167 VIELTLPGLDGERHLVIIRKK  187 (187)
T ss_pred             eEEEecCCCCCcEEEEEEecC
Confidence              2222343445566677764

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.54  E-value=1.7e-07  Score=96.96  Aligned_cols=76  Identities=21%  Similarity=0.394  Sum_probs=64.1

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC----CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG----IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY   80 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg----~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~   80 (378)
                      .|++++++     +.+++.|+++.    ..+.+..+|...+||++++||+|+|..+++|+.++. .+++|+.|+|||||.
T Consensus       291 ~v~gvDiS-----~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~-~~l~~~~r~LkpgG~  364 (475)
T PLN02336        291 HVVGIDLS-----VNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKP-ALFRSFFKWLKPGGK  364 (475)
T ss_pred             EEEEEECC-----HHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccccCCHH-HHHHHHHHHcCCCeE
Confidence            45555554     68888887752    246788889999999999999999999999998877 999999999999999


Q ss_pred             EEEEcC
Q 017068           81 LVISGP   86 (378)
Q Consensus        81 lvis~p   86 (378)
                      ++++.+
T Consensus       365 l~i~~~  370 (475)
T PLN02336        365 VLISDY  370 (475)
T ss_pred             EEEEEe
Confidence            999865

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.54  E-value=1e-07  Score=91.87  Aligned_cols=67  Identities=25%  Similarity=0.374  Sum_probs=56.8

Q ss_pred             CCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           12 APRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        12 ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      ...|+|+.+++.|.++...+.+.++|+..+||++++||+|++.++       + ..++|+.|+|||||+|++..|
T Consensus       116 ~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~-------~-~~~~e~~rvLkpgG~li~~~p  182 (272)
T PRK11088        116 FGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA-------P-CKAEELARVVKPGGIVITVTP  182 (272)
T ss_pred             EEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC-------C-CCHHHHHhhccCCCEEEEEeC
Confidence            445667899999999877788889999999999999999998653       1 346899999999999999876

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.53  E-value=1e-07  Score=92.08  Aligned_cols=77  Identities=22%  Similarity=0.289  Sum_probs=63.2

Q ss_pred             ecCCCCChHHHHHHHHHcC--------C------------------------CeEEEEcccCCCCCCCCceeEEEecCcc
Q 017068           10 SFAPRDSHKAQIQFALERG--------I------------------------PAFVAMLGTRRLPFPAFSFDIVHCSRCL   57 (378)
Q Consensus        10 s~ap~D~se~~vq~A~erg--------~------------------------~~~~~v~dae~LPfpd~SFD~V~cs~~l   57 (378)
                      .|-..|+|+.|++.|++.-        +                        .+.|.++|...+|+++++||+|+|..++
T Consensus       134 ~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl  213 (264)
T smart00138      134 KILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVL  213 (264)
T ss_pred             EEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhH
Confidence            4555667789999998742        1                        3567888988888889999999999999


Q ss_pred             ccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           58 IPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        58 ~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +|+.++. .++++++.|+|+|||+|++...
T Consensus       214 ~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~  243 (264)
T smart00138      214 IYFDEPTQRKLLNRFAEALKPGGYLFLGHS  243 (264)
T ss_pred             HhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence            9997543 4899999999999999999654

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.53  E-value=1.3e-07  Score=94.81  Aligned_cols=72  Identities=21%  Similarity=0.219  Sum_probs=61.6

Q ss_pred             CCChHHHHHHHHHcC--CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           14 RDSHKAQIQFALERG--IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        14 ~D~se~~vq~A~erg--~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .|.|+.|++.|+++.  ..+.+..+|++.+||++++||+|+++.+++||.+.. .+++|+.|+|||||++++..+
T Consensus       143 VD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~-~~L~e~~rvLkPGG~LvIi~~  216 (340)
T PLN02490        143 LDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ-RGIKEAYRVLKIGGKACLIGP  216 (340)
T ss_pred             EECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHH-HHHHHHHHhcCCCcEEEEEEe
Confidence            455678999998863  235677889999999999999999999999998887 899999999999999988754

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.52  E-value=6.8e-08  Score=91.45  Aligned_cols=101  Identities=18%  Similarity=0.159  Sum_probs=71.0

Q ss_pred             hcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-cc-ccccccccCCCCCCccccccccCc
Q 017068          219 KLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-IG-VYHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       219 ~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig-~~~~w~~~f~typrtyDliH~~~~  295 (378)
                      .+.......|||+|||+|.++..|.....   .|.-.|.+ .++..+-+++- +. +..|. +.+|..+.+||+|.++..
T Consensus        37 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~V~s~~~  112 (251)
T PRK10258         37 MLPQRKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDI-ESLPLATATFDLAWSNLA  112 (251)
T ss_pred             hcCccCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCc-ccCcCCCCcEEEEEECch
Confidence            34444567899999999999988876654   55666765 78887777753 11 12233 334433479999998766


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      +...         -+...+|-|+-|+|+|||.+++..
T Consensus       113 l~~~---------~d~~~~l~~~~~~Lk~gG~l~~~~  140 (251)
T PRK10258        113 VQWC---------GNLSTALRELYRVVRPGGVVAFTT  140 (251)
T ss_pred             hhhc---------CCHHHHHHHHHHHcCCCeEEEEEe
Confidence            6422         134689999999999999999984

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.51  E-value=5.4e-08  Score=79.61  Aligned_cols=68  Identities=31%  Similarity=0.432  Sum_probs=56.4

Q ss_pred             CCCCChHHHHHHHHHcC----CCeEEEEcccCCCCCCCCceeEEEecCc-cccccCCh-HHHHHHHhhcccCCc
Q 017068           12 APRDSHKAQIQFALERG----IPAFVAMLGTRRLPFPAFSFDIVHCSRC-LIPFTAYN-ATYLIEVDRLLRPGG   79 (378)
Q Consensus        12 ap~D~se~~vq~A~erg----~~~~~~v~dae~LPfpd~SFD~V~cs~~-l~hw~~~~-~~~L~Ev~RVLkPGG   79 (378)
                      ...|+|+.|++.|+++.    .++.+.++|.+++|+.+++||+|+|+.+ ++|+.+.+ ..+++++.++|||||
T Consensus        28 ~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   28 IGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             EEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             EEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            34456689999999875    6889999999999999999999999665 88866544 689999999999998

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.48  E-value=7.2e-08  Score=92.83  Aligned_cols=97  Identities=21%  Similarity=0.145  Sum_probs=67.7

Q ss_pred             eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhhcc---------ccccccccccCCCCCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGL---------IGVYHDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eRGl---------ig~~~~w~~~f~typrtyDliH~~~  294 (378)
                      ..|||+|||+|.++..|..+ +. --+|+-.|.+ .+|..+-+|.-         +-....=.+.+|.-+.+||+|.++.
T Consensus        75 ~~VLDlGcGtG~~~~~la~~~~~-~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  153 (261)
T PLN02233         75 DRVLDLCCGSGDLAFLLSEKVGS-DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY  153 (261)
T ss_pred             CEEEEECCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence            57999999999998877653 11 0156777766 88888766531         1122222344543237999999987


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .+..+.         +...+|-||-|+|||||.+++.|
T Consensus       154 ~l~~~~---------d~~~~l~ei~rvLkpGG~l~i~d  182 (261)
T PLN02233        154 GLRNVV---------DRLKAMQEMYRVLKPGSRVSILD  182 (261)
T ss_pred             ccccCC---------CHHHHHHHHHHHcCcCcEEEEEE
Confidence            777543         34678999999999999998875

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.47  E-value=7.7e-08  Score=91.90  Aligned_cols=79  Identities=22%  Similarity=0.329  Sum_probs=64.7

Q ss_pred             CCeEEEecCCCCChHHHHHHHH----HcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068            4 ENILTLSFAPRDSHKAQIQFAL----ERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~----erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      .+|+++|++     |.+|+.|+    +.|+.+.+....++.|-...++||+|+|..+++|.+++. .+++++.+.+||||
T Consensus        82 a~VtgiD~s-----e~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~-~~~~~c~~lvkP~G  155 (243)
T COG2227          82 ASVTGIDAS-----EKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPE-SFLRACAKLVKPGG  155 (243)
T ss_pred             CeeEEecCC-----hHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHH-HHHHHHHHHcCCCc
Confidence            345555555     56666655    456777777788888888789999999999999999998 89999999999999


Q ss_pred             EEEEEcCCC
Q 017068           80 YLVISGPPV   88 (378)
Q Consensus        80 ~lvis~pp~   88 (378)
                      .+++|++..
T Consensus       156 ~lf~STinr  164 (243)
T COG2227         156 ILFLSTINR  164 (243)
T ss_pred             EEEEecccc
Confidence            999999853

>PRK08317 hypothetical protein; Provisional

Probab=98.46  E-value=4.1e-07  Score=83.47  Aligned_cols=71  Identities=35%  Similarity=0.484  Sum_probs=60.7

Q ss_pred             CChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.++.+++.|+++    +..+.+..+|++.+|+++++||+|++..++.|+.+.. .+++++.++|||||++++..+
T Consensus        51 d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~-~~l~~~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         51 DRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPA-RALAEIARVLRPGGRVVVLDT  125 (241)
T ss_pred             eCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhhccCCHH-HHHHHHHHHhcCCcEEEEEec
Confidence            4456888888776    3346677888889999999999999999999998877 999999999999999999865

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.45  E-value=4e-07  Score=83.84  Aligned_cols=73  Identities=23%  Similarity=0.260  Sum_probs=61.5

Q ss_pred             CCCChHHHHHHHHHcCC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           13 PRDSHKAQIQFALERGI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        13 p~D~se~~vq~A~erg~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      ..|.++.+++.|+++.. .+.+..+|.+.+|+++++||+|+|+.+++|..+.. ..+.++.|+|||||+++++.+
T Consensus        63 ~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~-~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072        63 ALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLS-QALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             EEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccCHH-HHHHHHHHHcCCCcEEEEEeC
Confidence            34556789988888753 35677889999999999999999999987766666 999999999999999999875

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.45  E-value=4e-07  Score=86.40  Aligned_cols=75  Identities=19%  Similarity=0.190  Sum_probs=61.1

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS   84 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis   84 (378)
                      .|+++++     |+.|++.|+++...+.+..+|++.++ ++++||+|+|+.+++|..+.. .+++++.|+|||||+|+++
T Consensus        57 ~v~gvD~-----s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~-~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683         57 RITGIDS-----SPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQWLPDHL-ELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             EEEEEEC-----CHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhhCCCHH-HHHHHHHHhcCCCcEEEEE
Confidence            4565554     46899999988656778888887765 567999999999987666655 9999999999999999998


Q ss_pred             cC
Q 017068           85 GP   86 (378)
Q Consensus        85 ~p   86 (378)
                      .+
T Consensus       130 ~~  131 (258)
T PRK01683        130 MP  131 (258)
T ss_pred             CC
Confidence            65

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.42  E-value=4.8e-07  Score=84.26  Aligned_cols=76  Identities=25%  Similarity=0.395  Sum_probs=61.4

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      .|++++++     +.+++.|+++    +. .+.+..+|++.+|+++++||+|++..+++|..+.. .+++|+.|+|||||
T Consensus        72 ~v~gvD~s-----~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~-~~l~~~~~~Lk~gG  145 (231)
T TIGR02752        72 HVIGLDFS-----ENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYM-QVLREMYRVVKPGG  145 (231)
T ss_pred             EEEEEECC-----HHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHH-HHHHHHHHHcCcCe
Confidence            45666655     5778777765    23 35677889999999999999999999888777766 99999999999999


Q ss_pred             EEEEEcC
Q 017068           80 YLVISGP   86 (378)
Q Consensus        80 ~lvis~p   86 (378)
                      ++++..+
T Consensus       146 ~l~~~~~  152 (231)
T TIGR02752       146 KVVCLET  152 (231)
T ss_pred             EEEEEEC
Confidence            9998654

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.41  E-value=1.2e-08  Score=88.31  Aligned_cols=96  Identities=21%  Similarity=0.330  Sum_probs=68.9

Q ss_pred             CCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccccccccccccCCCCCCccccccccCccccccC
Q 017068          223 PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKN  301 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f~typrtyDliH~~~~~~~~~~  301 (378)
                      ..-.+|||+|||+|.|+..|.+.+.   +++-.|.. ..+..   +-.....++-.++ +..+++||+|.|..+|.+.. 
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~-~~~~~~fD~i~~~~~l~~~~-   92 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDAQDP-PFPDGSFDLIICNDVLEHLP-   92 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEECHTH-HCHSSSEEEEEEESSGGGSS-
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhhhhh-hccccchhhHhhHHHHhhcc-
Confidence            3456999999999999999988776   66666655 44444   2222222211111 12248999999999999764 


Q ss_pred             CCCCCCCCCccceeeeecccccCCCeEEEeCCH
Q 017068          302 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP  334 (378)
Q Consensus       302 ~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~  334 (378)
                              +...+|-+|-|+|+|||++++.+..
T Consensus        93 --------d~~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   93 --------DPEEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             --------HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             --------cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence                    3578999999999999999999754

...

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.37  E-value=3.5e-07  Score=87.19  Aligned_cols=71  Identities=20%  Similarity=0.165  Sum_probs=57.7

Q ss_pred             CChHHHHHHHHHc----CC--CeEEEEcccCCCC-CCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GI--PAFVAMLGTRRLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~--~~~~~v~dae~LP-fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.|+.|++.|+++    |+  .+.+..++++.++ +++++||+|+|..+++|+.++. .+++++.|+|||||++++...
T Consensus        73 D~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~-~~l~~~~~~LkpgG~l~i~~~  150 (255)
T PRK11036         73 DLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPK-SVLQTLWSVLRPGGALSLMFY  150 (255)
T ss_pred             ECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHH-HHHHHHHHHcCCCeEEEEEEE
Confidence            4556888888775    32  3567778887774 7889999999999998887776 999999999999999998654

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.33  E-value=2.7e-07  Score=79.75  Aligned_cols=52  Identities=42%  Similarity=0.787  Sum_probs=45.1

Q ss_pred             EcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcCC
Q 017068           35 MLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP   87 (378)
Q Consensus        35 v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~pp   87 (378)
                      ..+....++++++||+|+|..+++|.+++. .+|+++.|+|||||+++++.+.
T Consensus        66 ~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~-~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   66 NFDAQDPPFPDGSFDLIICNDVLEHLPDPE-EFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             EEECHTHHCHSSSEEEEEEESSGGGSSHHH-HHHHHHHHCEEEEEEEEEEEEB
T ss_pred             hhhhhhhhccccchhhHhhHHHHhhcccHH-HHHHHHHHhcCCCCEEEEEEcC
Confidence            333446678899999999999999998766 9999999999999999999873

...

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.33  E-value=2e-07  Score=88.84  Aligned_cols=99  Identities=16%  Similarity=0.208  Sum_probs=70.5

Q ss_pred             hcCCCCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhhccccccccccccCCCCCCccccccccCc
Q 017068          219 KLGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       219 ~~~~~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f~typrtyDliH~~~~  295 (378)
                      .+....-..|||+|||+|.++..|..+  ..   .|+-.|.+ .++..+-++++-=+..|-. .++ ...+||+|+|..+
T Consensus        24 ~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~---~v~gvD~s~~~~~~a~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~   98 (255)
T PRK14103         24 RVGAERARRVVDLGCGPGNLTRYLARRWPGA---VIEALDSSPEMVAAARERGVDARTGDVR-DWK-PKPDTDVVVSNAA   98 (255)
T ss_pred             hCCCCCCCEEEEEcCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHhcCCcEEEcChh-hCC-CCCCceEEEEehh
Confidence            344334478999999999999888765  22   45666655 8888888887522222322 232 2368999999988


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      |....         +...+|-|+-|+|+|||++++.
T Consensus        99 l~~~~---------d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         99 LQWVP---------EHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             hhhCC---------CHHHHHHHHHHhCCCCcEEEEE
Confidence            87543         2357889999999999999986

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.30  E-value=1e-06  Score=77.26  Aligned_cols=70  Identities=33%  Similarity=0.506  Sum_probs=60.1

Q ss_pred             CChHHHHHHHHHc----CCC-eEEEEcccCCCC--CCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GIP-AFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~~-~~~~v~dae~LP--fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.|+.|++.|+++    +.+ +.+.++|++.++  |+ +.||+|++..+++|+.+.. .+++++.|+|++||.++++.+
T Consensus        35 D~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l~~~~~~~-~~l~~~~~~lk~~G~~i~~~~  111 (152)
T PF13847_consen   35 DISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGVLHHFPDPE-KVLKNIIRLLKPGGILIISDP  111 (152)
T ss_dssp             ESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEESTGGGTSHHH-HHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCchhhccCHH-HHHHHHHHHcCCCcEEEEEEC
Confidence            4457999999884    554 788999998888  87 9999999999887777776 999999999999999999876

...

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.29  E-value=1e-07  Score=90.76  Aligned_cols=115  Identities=22%  Similarity=0.216  Sum_probs=67.6

Q ss_pred             hHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc------ccccc
Q 017068          202 SRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL------IGVYH  274 (378)
Q Consensus       202 ~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl------ig~~~  274 (378)
                      .+.|++.+.+...     ...|.  .|||++||+|-++..|..+---.-.|+-.|-+ ++|.++-+|--      |-...
T Consensus        32 ~~~wr~~~~~~~~-----~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~  104 (233)
T PF01209_consen   32 DRRWRRKLIKLLG-----LRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQ  104 (233)
T ss_dssp             -----SHHHHHHT-------S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE
T ss_pred             HHHHHHHHHhccC-----CCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEE
Confidence            3678887655332     23333  89999999999888776532111256777876 99988877643      11111


Q ss_pred             cccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          275 DWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       275 ~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .=.|.+|.-..|||.|-|+..+...         ++....|-||-|||||||.++|-|
T Consensus       105 ~da~~lp~~d~sfD~v~~~fglrn~---------~d~~~~l~E~~RVLkPGG~l~ile  153 (233)
T PF01209_consen  105 GDAEDLPFPDNSFDAVTCSFGLRNF---------PDRERALREMYRVLKPGGRLVILE  153 (233)
T ss_dssp             -BTTB--S-TT-EEEEEEES-GGG----------SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCHHHhcCCCCceeEEEHHhhHHhh---------CCHHHHHHHHHHHcCCCeEEEEee
Confidence            1134455334899999998777644         345789999999999999998875

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR00740 methyltransferase, putative

Probab=98.28  E-value=1.7e-06  Score=81.47  Aligned_cols=75  Identities=17%  Similarity=0.221  Sum_probs=59.3

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc------CCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER------GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRP   77 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er------g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkP   77 (378)
                      .|++++++     +.|++.|+++      ...+.+..+|...+|+++  ||+|+|+++++|+.+.+ ..+++++.|+|||
T Consensus        81 ~v~gvD~s-----~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~d~v~~~~~l~~~~~~~~~~~l~~i~~~Lkp  153 (239)
T TIGR00740        81 KIIGIDNS-----QPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN--ASMVILNFTLQFLPPEDRIALLTKIYEGLNP  153 (239)
T ss_pred             eEEEEeCC-----HHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCC--CCEEeeecchhhCCHHHHHHHHHHHHHhcCC
Confidence            35555554     6888888775      224678888999988864  89999999988876532 5899999999999


Q ss_pred             CcEEEEEcC
Q 017068           78 GGYLVISGP   86 (378)
Q Consensus        78 GG~lvis~p   86 (378)
                      ||.|+++.+
T Consensus       154 gG~l~i~d~  162 (239)
T TIGR00740       154 NGVLVLSEK  162 (239)
T ss_pred             CeEEEEeec
Confidence            999999875

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.26  E-value=4.4e-07  Score=88.37  Aligned_cols=114  Identities=13%  Similarity=0.139  Sum_probs=76.1

Q ss_pred             EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHH----Hhhcc-c-cccccccccCCCCCCccccccccCccccc
Q 017068          227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVI----YDRGL-I-GVYHDWCEPFSTYPRTYDLIHVSGIESLI  299 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i----~eRGl-i-g~~~~w~~~f~typrtyDliH~~~~~~~~  299 (378)
                      +|||+|||+|.++.+|..+..   .|...|.+ ..++.+    .+.|+ + ....|..+ + ..+.+||+|.+..+|...
T Consensus       123 ~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~-~-~~~~~fD~I~~~~vl~~l  197 (287)
T PRK12335        123 KALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINS-A-SIQEEYDFILSTVVLMFL  197 (287)
T ss_pred             CEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhc-c-cccCCccEEEEcchhhhC
Confidence            799999999999999988764   66777765 555543    34455 1 11222222 1 126899999999887654


Q ss_pred             cCCCCCCCCCCccceeeeecccccCCCeEEEeC---CH-----------HHHHHHHHHHhcCCceEEEe
Q 017068          300 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD---SP-----------EVIDKVSRIANTVRWTAAVH  354 (378)
Q Consensus       300 ~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d---~~-----------~~~~~~~~~~~~l~W~~~~~  354 (378)
                      .       .-.+..++-+|.|+|+|||++++-.   +.           -.-.+++++.+.  |++..+
T Consensus       198 ~-------~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~  257 (287)
T PRK12335        198 N-------RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY  257 (287)
T ss_pred             C-------HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence            2       2345689999999999999965531   10           123456666665  888764

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.25  E-value=1.3e-06  Score=86.96  Aligned_cols=55  Identities=29%  Similarity=0.318  Sum_probs=49.3

Q ss_pred             CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           30 PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        30 ~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      ++.+..++.+.+|+ +++||+|+|..+++|..++. .+++++.|+|||||.|+++..
T Consensus       173 ~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~dp~-~~L~~l~~~LkpGG~lvl~~~  227 (322)
T PRK15068        173 RAHLLPLGIEQLPA-LKAFDTVFSMGVLYHRRSPL-DHLKQLKDQLVPGGELVLETL  227 (322)
T ss_pred             CeEEEeCCHHHCCC-cCCcCEEEECChhhccCCHH-HHHHHHHHhcCCCcEEEEEEE
Confidence            56788889999999 88999999999999988777 999999999999999998753

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.25  E-value=2.2e-07  Score=85.51  Aligned_cols=93  Identities=14%  Similarity=0.193  Sum_probs=64.3

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHH----hhccc--cccccccccCCCCCCccccccccCcccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY----DRGLI--GVYHDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~----eRGli--g~~~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      ..|||+|||+|.++..|..+.-   .|...|.+ .++..+-    +.|+-  ....+.. .+ .++.+||+|.|..+|..
T Consensus        32 ~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~-~~-~~~~~fD~I~~~~~~~~  106 (195)
T TIGR00477        32 CKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDIN-AA-ALNEDYDFIFSTVVFMF  106 (195)
T ss_pred             CcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccch-hc-cccCCCCEEEEeccccc
Confidence            4799999999999999987753   66777766 6665443    33441  1222222 12 23568999999888765


Q ss_pred             ccCCCCCCCCCCccceeeeecccccCCCeEEE
Q 017068          299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV  330 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii  330 (378)
                      ..       .-....++-++.|.|+|||++++
T Consensus       107 ~~-------~~~~~~~l~~~~~~LkpgG~lli  131 (195)
T TIGR00477       107 LQ-------AGRVPEIIANMQAHTRPGGYNLI  131 (195)
T ss_pred             CC-------HHHHHHHHHHHHHHhCCCcEEEE
Confidence            42       22456799999999999999544

Part of a tellurite-reducing operon tehA and tehB

>PLN02244 tocopherol O-methyltransferase

Probab=98.24  E-value=7.5e-07  Score=88.98  Aligned_cols=95  Identities=18%  Similarity=0.198  Sum_probs=63.4

Q ss_pred             eeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHH----hhcccc----ccccccccCCCCCCccccccccC
Q 017068          225 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIY----DRGLIG----VYHDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~----eRGlig----~~~~w~~~f~typrtyDliH~~~  294 (378)
                      -..|||+|||.|+++..|..+ ..   +|+-.|.+ .++..+-    ++|+..    ...|.. .+|.-+.+||+|.|..
T Consensus       119 ~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~-~~~~~~~~FD~V~s~~  194 (340)
T PLN02244        119 PKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL-NQPFEDGQFDLVWSME  194 (340)
T ss_pred             CCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc-cCCCCCCCccEEEECC
Confidence            467999999999999888764 33   44444544 5554433    335421    122332 2332248999999987


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .+.++.         +...+|-||-|+|||||.++|.+
T Consensus       195 ~~~h~~---------d~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        195 SGEHMP---------DKRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             chhccC---------CHHHHHHHHHHHcCCCcEEEEEE
Confidence            776553         23578999999999999999853

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.23  E-value=2.6e-07  Score=85.20  Aligned_cols=93  Identities=17%  Similarity=0.275  Sum_probs=65.1

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHH----Hhhccc---cccccccccCCCCCCccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVI----YDRGLI---GVYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i----~eRGli---g~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      -.|||+|||.|.++..|.++..   +|...|.+ .+++.+    .++|+-   ....|..+ + +++.+||+|.|..+|.
T Consensus        32 ~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~~  106 (197)
T PRK11207         32 GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVLM  106 (197)
T ss_pred             CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecchh
Confidence            4799999999999999998754   66777765 555443    334442   22334432 2 2357899999988875


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEE
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV  330 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii  330 (378)
                      .+.       ......++-+|-|.|+|||++++
T Consensus       107 ~~~-------~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207        107 FLE-------AKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             hCC-------HHHHHHHHHHHHHHcCCCcEEEE
Confidence            432       22346899999999999999655

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.20  E-value=1.1e-06  Score=83.48  Aligned_cols=118  Identities=16%  Similarity=0.212  Sum_probs=73.0

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhhcc-cccc-ccccccCCCCCCccccccccC
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDRGL-IGVY-HDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eRGl-ig~~-~~w~~~f~typrtyDliH~~~  294 (378)
                      +....-.+|||+|||.|.++..|...  .-   +|+-.|.+ .++..+-++-- +... .|-.+ +. .+.+||+|+|+.
T Consensus        27 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~  101 (258)
T PRK01683         27 VPLENPRYVVDLGCGPGNSTELLVERWPAA---RITGIDSSPAMLAEARSRLPDCQFVEADIAS-WQ-PPQALDLIFANA  101 (258)
T ss_pred             CCCcCCCEEEEEcccCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHhCCCCeEEECchhc-cC-CCCCccEEEEcc
Confidence            33344578999999999999888653  22   44556655 66665555421 1111 12111 21 246999999998


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH----HHHHHHHHHHhcCCceE
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----EVIDKVSRIANTVRWTA  351 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~----~~~~~~~~~~~~l~W~~  351 (378)
                      +|....         +...+|-+|-|+|+|||.+++.-..    .....+++++....|..
T Consensus       102 ~l~~~~---------d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  153 (258)
T PRK01683        102 SLQWLP---------DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ  153 (258)
T ss_pred             ChhhCC---------CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence            886443         2357899999999999999986311    11123445555555553

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.19  E-value=2.6e-07  Score=89.97  Aligned_cols=96  Identities=20%  Similarity=0.335  Sum_probs=63.3

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHH----HHhhcccc----ccccccccCCCCCCcccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSV----IYDRGLIG----VYHDWCEPFSTYPRTYDL  289 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~----i~eRGlig----~~~~w~~~f~typrtyDl  289 (378)
                      |+.|.  .|||+|||.||++-.+..+ ++   +|+-.+.+ +|+..    +-++||-.    ...|+.+    .+-+||-
T Consensus        60 l~~G~--~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~----~~~~fD~  130 (273)
T PF02353_consen   60 LKPGD--RVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD----LPGKFDR  130 (273)
T ss_dssp             --TT---EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------S-SE
T ss_pred             CCCCC--EEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc----cCCCCCE
Confidence            66664  8999999999999999887 77   44444444 66654    45778743    2334443    3348999


Q ss_pred             ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      |-+-..|.+..       +-+...++-+++|+|+|||.+++.
T Consensus       131 IvSi~~~Ehvg-------~~~~~~~f~~~~~~LkpgG~~~lq  165 (273)
T PF02353_consen  131 IVSIEMFEHVG-------RKNYPAFFRKISRLLKPGGRLVLQ  165 (273)
T ss_dssp             EEEESEGGGTC-------GGGHHHHHHHHHHHSETTEEEEEE
T ss_pred             EEEEechhhcC-------hhHHHHHHHHHHHhcCCCcEEEEE
Confidence            99988887652       334568899999999999999986

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.18  E-value=9.2e-07  Score=88.18  Aligned_cols=95  Identities=12%  Similarity=0.153  Sum_probs=70.0

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc----c---ccccccccccCCCCCCccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG----L---IGVYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG----l---ig~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      ..|||+|||.|.|+..|.....   +|.-.|.+ .+++++-++.    +   +-..+.=.+.++..+.+||+|-|..++.
T Consensus       133 ~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe  209 (322)
T PLN02396        133 LKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE  209 (322)
T ss_pred             CEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence            3799999999999988877654   66777876 7777776552    1   1112211234554457999999998888


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ...         +...+|-|+-|+|+|||.+++..
T Consensus       210 Hv~---------d~~~~L~~l~r~LkPGG~liist  235 (322)
T PLN02396        210 HVA---------NPAEFCKSLSALTIPNGATVLST  235 (322)
T ss_pred             hcC---------CHHHHHHHHHHHcCCCcEEEEEE
Confidence            664         23679999999999999999985

>PRK06922 hypothetical protein; Provisional

Probab=98.17  E-value=3.2e-06  Score=91.02  Aligned_cols=77  Identities=21%  Similarity=0.207  Sum_probs=60.3

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCCeEEEEcccCCCC--CCCCceeEEEecCccccccC------------ChHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFTA------------YNAT   66 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~~~~~v~dae~LP--fpd~SFD~V~cs~~l~hw~~------------~~~~   66 (378)
                      +|+++|+     |+.|++.|+++    +.++.+..+|+..+|  |++++||+|+++.+++||.+            ....
T Consensus       444 kVtGIDI-----S~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~k  518 (677)
T PRK06922        444 RIYGIDI-----SENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKK  518 (677)
T ss_pred             EEEEEEC-----CHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHH
Confidence            4555554     56888888775    344566778888888  89999999999998887632            2248


Q ss_pred             HHHHHhhcccCCcEEEEEcC
Q 017068           67 YLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        67 ~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +++++.|+|||||++++...
T Consensus       519 iLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        519 GLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             HHHHHHHHcCCCcEEEEEeC
Confidence            99999999999999999764

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.17  E-value=2.6e-06  Score=78.97  Aligned_cols=70  Identities=21%  Similarity=0.330  Sum_probs=56.9

Q ss_pred             CChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.|+.|++.|+++    |.  .+.+...|..+.|++ ++||+|++..+++|+.+.. .+++++.|+|||||+++++.+
T Consensus        30 d~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~i~~~  105 (224)
T smart00828       30 TISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHIKDKM-DLFSNISRHLKDGGHLVLADF  105 (224)
T ss_pred             ECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhCCCHH-HHHHHHHHHcCCCCEEEEEEc
Confidence            3467888888875    33  246677787777876 4899999999999987766 999999999999999999865

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.16  E-value=7.3e-07  Score=85.99  Aligned_cols=96  Identities=17%  Similarity=0.251  Sum_probs=64.5

Q ss_pred             eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhhcc----cc-ccccccccCCCCC-CccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGL----IG-VYHDWCEPFSTYP-RTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eRGl----ig-~~~~w~~~f~typ-rtyDliH~~~~~~  297 (378)
                      ..|||+|||+|+++..|... ..   .|+-.|.+ +++..+-+|--    +- ...|.. .. +|| .+||+|++..++.
T Consensus        54 ~~VLDiGcG~G~~a~~la~~~~~---~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~-~~-~~~~~~FD~V~s~~~l~  128 (263)
T PTZ00098         54 SKVLDIGSGLGGGCKYINEKYGA---HVHGVDICEKMVNIAKLRNSDKNKIEFEANDIL-KK-DFPENTFDMIYSRDAIL  128 (263)
T ss_pred             CEEEEEcCCCChhhHHHHhhcCC---EEEEEECCHHHHHHHHHHcCcCCceEEEECCcc-cC-CCCCCCeEEEEEhhhHH
Confidence            47999999999998888643 32   55666655 77776666532    11 112222 12 244 7999999976665


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      ++.       ..+...++-|+-|+|+|||++++.|.
T Consensus       129 h~~-------~~d~~~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098        129 HLS-------YADKKKLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             hCC-------HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            431       11346799999999999999999863

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.15  E-value=4.8e-07  Score=83.89  Aligned_cols=93  Identities=24%  Similarity=0.368  Sum_probs=62.8

Q ss_pred             eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHh----hccc---ccc-ccccccCCCCCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYD----RGLI---GVY-HDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~e----RGli---g~~-~~w~~~f~typrtyDliH~~~  294 (378)
                      +.|||+|||.|+++..+...  +.   +|.-.|.+ +++..+-+    .|+-   -++ .|..+ . +++.+||+|++..
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~---~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~-~-~~~~~fD~I~~~~   75 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHL---QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK-D-PFPDTYDLVFGFE   75 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc-C-CCCCCCCEeehHH
Confidence            36999999999998887643  23   34444444 66654444    3442   222 23222 1 3467899999988


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ++....         +...++-++.|+|+|||++++.+
T Consensus        76 ~l~~~~---------~~~~~l~~~~~~LkpgG~l~i~~  104 (224)
T smart00828       76 VIHHIK---------DKMDLFSNISRHLKDGGHLVLAD  104 (224)
T ss_pred             HHHhCC---------CHHHHHHHHHHHcCCCCEEEEEE
Confidence            877543         23678999999999999999975

>PRK08317 hypothetical protein; Provisional

Probab=98.15  E-value=1.2e-06  Score=80.47  Aligned_cols=108  Identities=23%  Similarity=0.295  Sum_probs=69.6

Q ss_pred             HHHHhhhhcCCCCeeEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh--cc---cccc-ccccccCC
Q 017068          212 YKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR--GL---IGVY-HDWCEPFS  281 (378)
Q Consensus       212 Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR--Gl---ig~~-~~w~~~f~  281 (378)
                      |.+.+...+.-..-.+|||+|||.|.++..+.+.   ..   +++-.|.+ .++..+-++  +.   +-.. .|.. .++
T Consensus         7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~---~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~   82 (241)
T PRK08317          7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEG---RVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLP   82 (241)
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCc---EEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCC
Confidence            4433333333334468999999999998887653   12   44555655 667777666  11   1111 1221 122


Q ss_pred             CCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          282 TYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       282 typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .-+.+||+||+..+|....         +...++-++-|+|+|||++++.+
T Consensus        83 ~~~~~~D~v~~~~~~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         83 FPDGSFDAVRSDRVLQHLE---------DPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             CCCCCceEEEEechhhccC---------CHHHHHHHHHHHhcCCcEEEEEe
Confidence            2237999999999887654         23678999999999999999864

>TIGR00452 methyltransferase, putative

Probab=98.15  E-value=3e-06  Score=84.24  Aligned_cols=55  Identities=24%  Similarity=0.212  Sum_probs=47.5

Q ss_pred             CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           30 PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        30 ~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .+.+..++.+.+|+. ++||+|+|+.+++|+.++. .+|+|++|+|||||.|++...
T Consensus       172 ~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~~dp~-~~L~el~r~LkpGG~Lvletl  226 (314)
T TIGR00452       172 RAILEPLGIEQLHEL-YAFDTVFSMGVLYHRKSPL-EHLKQLKHQLVIKGELVLETL  226 (314)
T ss_pred             CeEEEECCHHHCCCC-CCcCEEEEcchhhccCCHH-HHHHHHHHhcCCCCEEEEEEE
Confidence            355677788889875 4899999999999998877 999999999999999998754

Known examples to date are restricted to the proteobacteria.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.14  E-value=3.1e-06  Score=80.65  Aligned_cols=71  Identities=23%  Similarity=0.193  Sum_probs=56.7

Q ss_pred             CCChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           14 RDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .|.|+.|++.|+++    +.  .+.+..+++..+|+++  ||+|+|+.+++|+.+.. ..+++++.|+|||||.|+++..
T Consensus        88 vD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~--~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~  165 (247)
T PRK15451         88 IDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN--ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK  165 (247)
T ss_pred             EeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCC--CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            34556888888876    22  4677888888888864  89999999998876543 4799999999999999999864

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.13  E-value=4.5e-07  Score=86.48  Aligned_cols=93  Identities=15%  Similarity=0.154  Sum_probs=67.3

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cccc---cc-ccccccCC-CCCCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG---VY-HDWCEPFS-TYPRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig---~~-~~w~~~f~-typrtyDliH~~~~  295 (378)
                      ..|||+|||.|.++..|..+..   +|+-.|.+ .++..+-++    |+..   +. .+..+ ++ ..+.+||+|.|..+
T Consensus        46 ~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~-l~~~~~~~fD~V~~~~v  121 (255)
T PRK11036         46 LRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQD-IAQHLETPVDLILFHAV  121 (255)
T ss_pred             CEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHH-HhhhcCCCCCEEEehhH
Confidence            5899999999999999988765   67777776 777766554    4321   11 12221 22 23489999999988


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      +....         +...+|-|+-|+|+|||++++.
T Consensus       122 l~~~~---------~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        122 LEWVA---------DPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             HHhhC---------CHHHHHHHHHHHcCCCeEEEEE
Confidence            87654         2257899999999999999875

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.13  E-value=1.3e-06  Score=84.23  Aligned_cols=101  Identities=15%  Similarity=0.152  Sum_probs=63.4

Q ss_pred             eeEEEecCCcceeeeeeccCC-C-eeEEEeccCCCC-cchHHHHhhcc-ccc-cccccccCCCCCCccccccccCccccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSD-P-VWVMNVVPARKS-STLSVIYDRGL-IGV-YHDWCEPFSTYPRTYDLIHVSGIESLI  299 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~-~-vwvmnv~p~~~~-~~l~~i~eRGl-ig~-~~~w~~~f~typrtyDliH~~~~~~~~  299 (378)
                      -.+|||+|||.|.++..|.+. + .-..+|+-.|.+ .++..+.+|.- +.. ..|- +.+|.-+.+||+|.+.  |+  
T Consensus        86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~-~~lp~~~~sfD~I~~~--~~--  160 (272)
T PRK11088         86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS-HRLPFADQSLDAIIRI--YA--  160 (272)
T ss_pred             CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec-ccCCCcCCceeEEEEe--cC--
Confidence            356999999999999888643 1 101246677766 88888877642 111 1221 1233223799999863  22  


Q ss_pred             cCCCCCCCCCCccceeeeecccccCCCeEEEeCCH-HHHHHHHH
Q 017068          300 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSR  342 (378)
Q Consensus       300 ~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-~~~~~~~~  342 (378)
                                  ...+-|+.|+|+|||++|+.... ..+.+++.
T Consensus       161 ------------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~  192 (272)
T PRK11088        161 ------------PCKAEELARVVKPGGIVITVTPGPRHLFELKG  192 (272)
T ss_pred             ------------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHH
Confidence                        12356899999999999987542 23334443

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.12  E-value=2.1e-06  Score=69.51  Aligned_cols=71  Identities=30%  Similarity=0.345  Sum_probs=37.0

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----C-CCeEEEEcccCCCC--CCCCceeEEEecCccccccCChHHHHHHHhhcccC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----G-IPAFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP   77 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g-~~~~~~v~dae~LP--fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkP   77 (378)
                      .+++++++|.     |++.|+++    + ............+.  .+.++||+|+++.+++|+.+.. .+++.+.++|||
T Consensus        22 ~~~~~D~s~~-----~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~~~~-~~l~~~~~~L~p   95 (99)
T PF08242_consen   22 RYTGVDISPS-----MLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLEDIE-AVLRNIYRLLKP   95 (99)
T ss_dssp             EEEEEESSSS-----TTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S-HH-HHHHHHTTT-TS
T ss_pred             EEEEEECCHH-----HHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhhhHH-HHHHHHHHHcCC
Confidence            4567777764     44444443    2 22223333332222  2236999999999999985555 999999999999


Q ss_pred             CcEE
Q 017068           78 GGYL   81 (378)
Q Consensus        78 GG~l   81 (378)
                      ||.|
T Consensus        96 gG~l   99 (99)
T PF08242_consen   96 GGIL   99 (99)
T ss_dssp             S-EE
T ss_pred             CCCC
Confidence            9986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.12  E-value=4.5e-06  Score=76.96  Aligned_cols=73  Identities=18%  Similarity=0.300  Sum_probs=53.8

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEecCccccccCC-hHHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~-~~~~L~Ev~RVLkPG   78 (378)
                      .|++++     .|+.+++.|+++    ++. +.+.++|...++++ ++||+|+|+.+++|+... ...+++++.|+||||
T Consensus        54 ~V~gvD-----~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkpg  127 (197)
T PRK11207         54 DVTAWD-----KNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG  127 (197)
T ss_pred             EEEEEe-----CCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCC
Confidence            455564     456777776653    443 56677788778885 679999999988766542 358999999999999


Q ss_pred             cEEEE
Q 017068           79 GYLVI   83 (378)
Q Consensus        79 G~lvi   83 (378)
                      |++++
T Consensus       128 G~~~~  132 (197)
T PRK11207        128 GYNLI  132 (197)
T ss_pred             cEEEE
Confidence            99654

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.10  E-value=5.5e-06  Score=77.25  Aligned_cols=70  Identities=20%  Similarity=0.136  Sum_probs=56.3

Q ss_pred             CCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEc
Q 017068           13 PRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        13 p~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      ..|+|+.+++.|+++...+.+..+++.. ||++++||+|+|..+++|+.... ..+++|+.|++  +++++++.
T Consensus        72 giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e  142 (204)
T TIGR03587        72 GVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE  142 (204)
T ss_pred             EEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence            3455679999999875556677788777 99999999999999999986432 58999999998  57887764

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.10  E-value=2.7e-06  Score=81.52  Aligned_cols=91  Identities=16%  Similarity=0.298  Sum_probs=60.4

Q ss_pred             CCCChHHHHHHHHHcCCCeEE-----EEcccCCCCCC--CCceeEEEecCccccccCChHHHHHHHhhcccCCc-EEEEE
Q 017068           13 PRDSHKAQIQFALERGIPAFV-----AMLGTRRLPFP--AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG-YLVIS   84 (378)
Q Consensus        13 p~D~se~~vq~A~erg~~~~~-----~v~dae~LPfp--d~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG-~lvis   84 (378)
                      ..|.|++|+++|++. .++..     ...+.+-.++-  ++|.|+|+|++|+ ||-+.+ ++++++.||||+.| .+++-
T Consensus        60 atD~s~~mL~~a~k~-~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~-HWFdle-~fy~~~~rvLRk~Gg~iavW  136 (261)
T KOG3010|consen   60 ATDVSEAMLKVAKKH-PPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV-HWFDLE-RFYKEAYRVLRKDGGLIAVW  136 (261)
T ss_pred             eecCCHHHHHHhhcC-CCcccccCCccccccccccccCCCcceeeehhhhhH-HhhchH-HHHHHHHHHcCCCCCEEEEE
Confidence            457779999999885 33332     22233444554  9999999999996 999999 99999999999977 55442


Q ss_pred             cCCCCCCccchHHHHHHHHHHHhcee
Q 017068           85 GPPVQWPKQDKEWADLQAVARALCYE  110 (378)
Q Consensus        85 ~pp~~~~~~~~~w~~l~~l~~~lcw~  110 (378)
                      .-.-+.    -.|-+..++..+++|+
T Consensus       137 ~Y~dd~----v~~pE~dsv~~r~~~~  158 (261)
T KOG3010|consen  137 NYNDDF----VDWPEFDSVMLRLYDS  158 (261)
T ss_pred             EccCCC----cCCHHHHHHHHHHhhc
Confidence            221011    1133445555666665

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.10  E-value=4.6e-06  Score=76.79  Aligned_cols=73  Identities=16%  Similarity=0.306  Sum_probs=53.7

Q ss_pred             CeEEEecCCCCChHHHHHHHHH----cCCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALE----RGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~e----rg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG   79 (378)
                      .|+++|++     +.+++.|++    .++++...+++....+++ ++||+|+|+.+++|+.... ..+++++.|+|||||
T Consensus        54 ~V~~iD~s-----~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  127 (195)
T TIGR00477        54 DVRAWDHN-----PASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGG  127 (195)
T ss_pred             eEEEEECC-----HHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCc
Confidence            45665555     567766544    466666667777667775 5899999999888775432 489999999999999


Q ss_pred             EEEE
Q 017068           80 YLVI   83 (378)
Q Consensus        80 ~lvi   83 (378)
                      ++++
T Consensus       128 ~lli  131 (195)
T TIGR00477       128 YNLI  131 (195)
T ss_pred             EEEE
Confidence            9654

Part of a tellurite-reducing operon tehA and tehB

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.09  E-value=2.7e-07  Score=75.75  Aligned_cols=97  Identities=24%  Similarity=0.335  Sum_probs=63.9

Q ss_pred             eEEEecCCcceeeeeeccC--CCeeEEEeccCCCC-cchHHHHhhc----c---cc-ccccccccCCCCCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKS-STLSVIYDRG----L---IG-VYHDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~--~~vwvmnv~p~~~~-~~l~~i~eRG----l---ig-~~~~w~~~f~typrtyDliH~~~  294 (378)
                      ..|||+|||+|.++.+|..  ...   .|+-.|.+ ..++.+-+|-    .   +- ...|+ ......+..||+|.+..
T Consensus         3 ~~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen    3 GRVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             CEEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred             CEEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence            3689999999999999988  555   45666655 6666555554    2   22 22334 11234445699999998


Q ss_pred             -ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          295 -IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       295 -~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                       ++..+.      .......+|-++-+.|||||+++|++
T Consensus        79 ~~~~~~~------~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   79 FTLHFLL------PLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             GSGGGCC------HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Ccccccc------chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence             333222      11122456888999999999999974

...

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.07  E-value=9.3e-06  Score=74.19  Aligned_cols=71  Identities=30%  Similarity=0.315  Sum_probs=58.7

Q ss_pred             CChHHHHHHHHHcCC---CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALERGI---PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~erg~---~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.++.+++.++++..   .+.+..+++..+|+++++||+|+++.+++|..+.. .+++++.++|+|||++++...
T Consensus        71 D~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~-~~l~~~~~~L~~gG~l~~~~~  144 (223)
T TIGR01934        71 DFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQ-KALREMYRVLKPGGRLVILEF  144 (223)
T ss_pred             ECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHH-HHHHHHHHHcCCCcEEEEEEe
Confidence            344688888877642   35677888889999999999999999988877766 999999999999999998654

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.07  E-value=4.2e-05  Score=78.01  Aligned_cols=129  Identities=14%  Similarity=0.111  Sum_probs=77.0

Q ss_pred             eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhh----cc-----ccccccccccCCCC-CCccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GL-----IGVYHDWCEPFSTY-PRTYDLIHV  292 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eR----Gl-----ig~~~~w~~~f~ty-prtyDliH~  292 (378)
                      ..|||+|||+|-.|.+|..+  ..   .|+-+|.+ ..+..+-+.    +.     +-++.  ...++.. +.+||+|-|
T Consensus       230 ~~VLDLGCGtGvi~i~la~~~P~~---~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~--~D~l~~~~~~~fDlIls  304 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLLDKNPQA---KVVFVDESPMAVASSRLNVETNMPEALDRCEFMI--NNALSGVEPFRFNAVLC  304 (378)
T ss_pred             CeEEEEeccccHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE--ccccccCCCCCEEEEEE
Confidence            47999999999999888754  23   45566655 455443321    11     12222  2223333 358999999


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC--CHHHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEEEE
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD--SPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVAT  370 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d--~~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~  370 (378)
                      +-.|..-..  .  ..-....++-+.-|+|+|||.+++-.  ..++..+++++..    ++.....    ..+=+|+-++
T Consensus       305 NPPfh~~~~--~--~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va~----~~kf~vl~a~  372 (378)
T PRK15001        305 NPPFHQQHA--L--TDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIAT----NNKFVVLKAV  372 (378)
T ss_pred             CcCcccCcc--C--CHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEcc----CCCEEEEEEE
Confidence            877753210  0  00012467788999999999998874  3456666666543    2333322    2456788777


Q ss_pred             e
Q 017068          371 K  371 (378)
Q Consensus       371 K  371 (378)
                      |
T Consensus       373 k  373 (378)
T PRK15001        373 K  373 (378)
T ss_pred             e
Confidence            7

>PRK05785 hypothetical protein; Provisional

Probab=98.06  E-value=2.4e-06  Score=80.75  Aligned_cols=105  Identities=15%  Similarity=0.151  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhhccccccccccccC
Q 017068          203 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPF  280 (378)
Q Consensus       203 ~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f  280 (378)
                      ..|++.+-......   +..  -.+|||+|||+|.++..|.+. +.   +|+-.|.+ ++|+.+-+++-  ..+.-.+.+
T Consensus        35 ~~wr~~~~~~l~~~---~~~--~~~VLDlGcGtG~~~~~l~~~~~~---~v~gvD~S~~Ml~~a~~~~~--~~~~d~~~l  104 (226)
T PRK05785         35 VRWRAELVKTILKY---CGR--PKKVLDVAAGKGELSYHFKKVFKY---YVVALDYAENMLKMNLVADD--KVVGSFEAL  104 (226)
T ss_pred             HHHHHHHHHHHHHh---cCC--CCeEEEEcCCCCHHHHHHHHhcCC---EEEEECCCHHHHHHHHhccc--eEEechhhC
Confidence            56877664433221   122  258999999999999888776 33   67888877 89988877642  122233445


Q ss_pred             CCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCC
Q 017068          281 STYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEG  326 (378)
Q Consensus       281 ~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG  326 (378)
                      |.-+.+||+|.|+..+..+.         +.+..|-||.|+|||.+
T Consensus       105 p~~d~sfD~v~~~~~l~~~~---------d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        105 PFRDKSFDVVMSSFALHASD---------NIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             CCCCCCEEEEEecChhhccC---------CHHHHHHHHHHHhcCce
Confidence            53348999999987765432         45789999999999953

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.06  E-value=2e-06  Score=83.26  Aligned_cols=133  Identities=14%  Similarity=0.119  Sum_probs=87.3

Q ss_pred             cCccccccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCccee----eeeeccCC----CeeEEEeccCCCC-cchHH
Q 017068          193 NGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGG----FAAALTSD----PVWVMNVVPARKS-STLSV  263 (378)
Q Consensus       193 ~~~~~F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~----faa~L~~~----~vwvmnv~p~~~~-~~l~~  263 (378)
                      ++.+.|-.|..+|..-.+.....+......+.--.|+|+|||+|-    +|..|.+.    .-|...|..+|-+ ..|..
T Consensus        68 i~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~  147 (264)
T smart00138       68 TNETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEK  147 (264)
T ss_pred             cCCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHH
Confidence            345678899999998777666544322222333579999999994    56555432    1244578888876 77765


Q ss_pred             HHhhcccc-----------------------------------ccccccccCCCCCCccccccccCccccccCCCCCCCC
Q 017068          264 IYDRGLIG-----------------------------------VYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNS  308 (378)
Q Consensus       264 i~eRGlig-----------------------------------~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~  308 (378)
                      +- +|.-+                                   ..||-.+. ++.+..||+|.|..+|.++.       .
T Consensus       148 Ar-~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~-~~~~~~fD~I~crnvl~yf~-------~  218 (264)
T smart00138      148 AR-AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAE-SPPLGDFDLIFCRNVLIYFD-------E  218 (264)
T ss_pred             HH-cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCC-CCccCCCCEEEechhHHhCC-------H
Confidence            54 33210                                   12343332 21247999999999988774       1


Q ss_pred             CCccceeeeecccccCCCeEEEeCCH
Q 017068          309 CSLVDLMVEMDRMLRPEGTVVVRDSP  334 (378)
Q Consensus       309 c~~~~~l~EmDRiLRPgG~~ii~d~~  334 (378)
                      -....++-++-|+|+|||++++-...
T Consensus       219 ~~~~~~l~~l~~~L~pGG~L~lg~~E  244 (264)
T smart00138      219 PTQRKLLNRFAEALKPGGYLFLGHSE  244 (264)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEECcc
Confidence            11246999999999999999997654

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.06  E-value=2.6e-06  Score=78.46  Aligned_cols=96  Identities=17%  Similarity=0.153  Sum_probs=63.8

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc---ccccccccccCCCCCCccccccccCccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL---IGVYHDWCEPFSTYPRTYDLIHVSGIESLIKN  301 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl---ig~~~~w~~~f~typrtyDliH~~~~~~~~~~  301 (378)
                      ..|||+|||.|.|+..|....- ...+.-.|.+ ..+..+.++.-   .-+..|.. .++..+.+||+|.|..++.... 
T Consensus        36 ~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~vi~~~~l~~~~-  112 (240)
T TIGR02072        36 ASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAE-KLPLEDSSFDLIVSNLALQWCD-  112 (240)
T ss_pred             CeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchh-hCCCCCCceeEEEEhhhhhhcc-
Confidence            5799999999999988875421 0123444544 55555554431   11222222 2343457999999998876432 


Q ss_pred             CCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          302 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       302 ~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                              +...+|-++.|+|+|||++++..
T Consensus       113 --------~~~~~l~~~~~~L~~~G~l~~~~  135 (240)
T TIGR02072       113 --------DLSQALSELARVLKPGGLLAFST  135 (240)
T ss_pred             --------CHHHHHHHHHHHcCCCcEEEEEe
Confidence                    34679999999999999999975

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.05  E-value=4.3e-06  Score=75.96  Aligned_cols=109  Identities=17%  Similarity=0.186  Sum_probs=70.7

Q ss_pred             eeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHh----hccc--cccccccccCCCCCCccccccccCc
Q 017068          225 IRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYD----RGLI--GVYHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~e----RGli--g~~~~w~~~f~typrtyDliH~~~~  295 (378)
                      -.+|||+|||+|.++.++..+  +.   +|.-.|.+ ..++.+-+    .|+-  -++.  ......++..||+|.++..
T Consensus        32 ~~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~--~d~~~~~~~~~D~v~~~~~  106 (187)
T PRK08287         32 AKHLIDVGAGTGSVSIEAALQFPSL---QVTAIERNPDALRLIKENRQRFGCGNIDIIP--GEAPIELPGKADAIFIGGS  106 (187)
T ss_pred             CCEEEEECCcCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHhCCCCeEEEe--cCchhhcCcCCCEEEECCC
Confidence            357999999999999877643  22   45555654 45544432    2321  1111  0111234578999998644


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEeC-CHHHHHHHHHHHhcCCce
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVRWT  350 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-~~~~~~~~~~~~~~l~W~  350 (378)
                      ..            .+..++-++-|+|+|||++++.. ..+...++.+++++..++
T Consensus       107 ~~------------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~  150 (187)
T PRK08287        107 GG------------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS  150 (187)
T ss_pred             cc------------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence            32            34567888999999999999976 456667777788777775

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.04  E-value=2e-06  Score=79.76  Aligned_cols=126  Identities=12%  Similarity=0.127  Sum_probs=78.5

Q ss_pred             CeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhh----cc--cc-ccccccccCCC-C-CCcccccc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GL--IG-VYHDWCEPFST-Y-PRTYDLIH  291 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig-~~~~w~~~f~t-y-prtyDliH  291 (378)
                      .-.+|||+|||+|.++..|...  ..   +|+-+|.+ ..++.+-++    |+  +- +..|..+.++. + +.+||+|.
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~---~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~  116 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDI---NFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIY  116 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCc---cEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEE
Confidence            3578999999999999888653  22   45666654 555544432    33  11 22233233431 3 47899998


Q ss_pred             ccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe-CCHHHHHHHHHHHhcCCceEEE
Q 017068          292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-d~~~~~~~~~~~~~~l~W~~~~  353 (378)
                      +.... .|........+.....+|-++.|+|+|||.+++. +.......+.+.+.+--|.+..
T Consensus       117 ~~~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~  178 (202)
T PRK00121        117 LNFPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVS  178 (202)
T ss_pred             EECCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence            75432 2321111222333567899999999999999987 5566777777766666677663

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.04  E-value=1e-06  Score=84.51  Aligned_cols=97  Identities=23%  Similarity=0.225  Sum_probs=73.9

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-cccc-----ccccccCCCCCCccccccccCcccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-IGVY-----HDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig~~-----~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      -+|||++||+|-+|..+.+.-= .-.|+-.|-+ ++|.++-+|-- .|..     +-=-|.+|..++|||++-++..+-.
T Consensus        53 ~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrn  131 (238)
T COG2226          53 DKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRN  131 (238)
T ss_pred             CEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhc
Confidence            5799999999999998875542 4477888876 99999998877 2311     2222346644499999999877765


Q ss_pred             ccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ..         ++...|-||-|||+|||-+++-+
T Consensus       132 v~---------d~~~aL~E~~RVlKpgG~~~vle  156 (238)
T COG2226         132 VT---------DIDKALKEMYRVLKPGGRLLVLE  156 (238)
T ss_pred             CC---------CHHHHHHHHHHhhcCCeEEEEEE
Confidence            43         46789999999999999888765

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.03  E-value=6.1e-06  Score=74.45  Aligned_cols=124  Identities=10%  Similarity=0.111  Sum_probs=78.5

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc-cc-ccccccccCCCCCCccccccccCcccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IG-VYHDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig-~~~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      +.|||+|||+|.++..+.....   .|+-.|.+ .++..+-++    |+ +- +..|+.+.   .+.+||+|-++-.+..
T Consensus        21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Vi~n~p~~~   94 (179)
T TIGR00537        21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VRGKFDVILFNPPYLP   94 (179)
T ss_pred             CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cCCcccEEEECCCCCC
Confidence            4599999999999988887654   45556654 555443332    22 11 22344432   2469999999876653


Q ss_pred             ccCCCCC------------CCCCCccceeeeecccccCCCeEEEeCCHHH-HHHHHHHHhcCCceEEEec
Q 017068          299 IKNPGSN------------KNSCSLVDLMVEMDRMLRPEGTVVVRDSPEV-IDKVSRIANTVRWTAAVHD  355 (378)
Q Consensus       299 ~~~~~~~------------~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~-~~~~~~~~~~l~W~~~~~~  355 (378)
                      ..+....            ..+.-+..+|-|+.|+|+|||.+++...... ..++.++++..-++.....
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~  164 (179)
T TIGR00537        95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVA  164 (179)
T ss_pred             CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEE
Confidence            3211110            0122256789999999999999988765443 5666667777777776543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.03  E-value=1.2e-05  Score=66.04  Aligned_cols=75  Identities=27%  Similarity=0.342  Sum_probs=54.9

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC------CCeEEEEccc-CCCCCCCCceeEEEecC-ccccccC--ChHHHHHHHhhc
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG------IPAFVAMLGT-RRLPFPAFSFDIVHCSR-CLIPFTA--YNATYLIEVDRL   74 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg------~~~~~~v~da-e~LPfpd~SFD~V~cs~-~l~hw~~--~~~~~L~Ev~RV   74 (378)
                      .|++++++     +.+++.|+++.      ..+.+..+|+ ....+. +.||+|++.. ++.++..  ....+++++.+.
T Consensus        27 ~v~gvD~s-----~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~  100 (112)
T PF12847_consen   27 RVVGVDIS-----PEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGFTLHFLLPLDERRRVLERIRRL  100 (112)
T ss_dssp             EEEEEESS-----HHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSGSGGGCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCC-----HHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCCccccccchhHHHHHHHHHHHh
Confidence            46666665     57888887763      4577888888 444443 4599999998 5554433  235899999999


Q ss_pred             ccCCcEEEEEc
Q 017068           75 LRPGGYLVISG   85 (378)
Q Consensus        75 LkPGG~lvis~   85 (378)
                      |+|||+|+++.
T Consensus       101 L~pgG~lvi~~  111 (112)
T PF12847_consen  101 LKPGGRLVINT  111 (112)
T ss_dssp             EEEEEEEEEEE
T ss_pred             cCCCcEEEEEE
Confidence            99999999975

...

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.01  E-value=6.4e-06  Score=76.58  Aligned_cols=77  Identities=23%  Similarity=0.300  Sum_probs=62.3

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCC-CCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEE
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL-PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLV   82 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~L-Pfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lv   82 (378)
                      ++|.+..+.   ++++.+..|.+||+++.-..++. .| .|||+|||.|++++++.+..+++ .+|+||.||   |...+
T Consensus        35 k~v~g~GvE---id~~~v~~cv~rGv~Viq~Dld~-gL~~f~d~sFD~VIlsqtLQ~~~~P~-~vL~EmlRV---gr~~I  106 (193)
T PF07021_consen   35 KQVDGYGVE---IDPDNVAACVARGVSVIQGDLDE-GLADFPDQSFDYVILSQTLQAVRRPD-EVLEEMLRV---GRRAI  106 (193)
T ss_pred             cCCeEEEEe---cCHHHHHHHHHcCCCEEECCHHH-hHhhCCCCCccEEehHhHHHhHhHHH-HHHHHHHHh---cCeEE
Confidence            455555554   67888999999999876544443 45 49999999999999999998888 999999998   77889


Q ss_pred             EEcCCC
Q 017068           83 ISGPPV   88 (378)
Q Consensus        83 is~pp~   88 (378)
                      +|.|++
T Consensus       107 VsFPNF  112 (193)
T PF07021_consen  107 VSFPNF  112 (193)
T ss_pred             EEecCh
Confidence            998854

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.01  E-value=3e-06  Score=78.93  Aligned_cols=94  Identities=19%  Similarity=0.252  Sum_probs=60.0

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----cc--cccc-ccccccCCCCCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GL--IGVY-HDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig~~-~~w~~~f~typrtyDliH~~~  294 (378)
                      .+|||+|||+|.++..|.+.   ..   +|+-.|.+ .++..+-++    ++  +-.+ .|- +.++.-+.+||+|+++.
T Consensus        47 ~~vLDiGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V~~~~  122 (231)
T TIGR02752        47 TSALDVCCGTADWSIALAEAVGPEG---HVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA-MELPFDDNSFDYVTIGF  122 (231)
T ss_pred             CEEEEeCCCcCHHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEEEech-hcCCCCCCCccEEEEec
Confidence            47999999999999888643   23   33444443 555444332    22  1112 222 22332237999999987


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .+....         +...+|-|+-|+|+|||.+++.+
T Consensus       123 ~l~~~~---------~~~~~l~~~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       123 GLRNVP---------DYMQVLREMYRVVKPGGKVVCLE  151 (231)
T ss_pred             ccccCC---------CHHHHHHHHHHHcCcCeEEEEEE
Confidence            665432         23568889999999999999875

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.01  E-value=4.7e-06  Score=81.38  Aligned_cols=114  Identities=12%  Similarity=0.110  Sum_probs=72.4

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccc----cccccccccC-CCCCCccccccccCccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLI----GVYHDWCEPF-STYPRTYDLIHVSGIESLI  299 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGli----g~~~~w~~~f-~typrtyDliH~~~~~~~~  299 (378)
                      .+|||+|||+|.++.++...+.  -.|...|.+ ..++.+.++.-.    ......+... +..+..||+|+|.-+... 
T Consensus       161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~-  237 (288)
T TIGR00406       161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEV-  237 (288)
T ss_pred             CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHH-
Confidence            6899999999998877665432  145666655 666655554321    1111112111 222468999998644332 


Q ss_pred             cCCCCCCCCCCccceeeeecccccCCCeEEEeCCH-HHHHHHHHHHhcCCceEEEe
Q 017068          300 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWTAAVH  354 (378)
Q Consensus       300 ~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-~~~~~~~~~~~~l~W~~~~~  354 (378)
                                 +..++-++-|+|+|||++++++-. +..+++.+.+++- |+....
T Consensus       238 -----------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~  281 (288)
T TIGR00406       238 -----------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI  281 (288)
T ss_pred             -----------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence                       246788999999999999999753 4556666666665 776543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.00  E-value=1.7e-05  Score=73.29  Aligned_cols=77  Identities=29%  Similarity=0.346  Sum_probs=61.6

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcC------CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccC
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERG------IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP   77 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg------~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkP   77 (378)
                      ..++++++     ++.+++.|+++.      .++.+..+++..+++++++||+|+++.+++|+.+.. ..+.++.++|+|
T Consensus        77 ~~v~~~D~-----s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~-~~l~~~~~~L~~  150 (239)
T PRK00216         77 GEVVGLDF-----SEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDID-KALREMYRVLKP  150 (239)
T ss_pred             CeEEEEeC-----CHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHH-HHHHHHHHhccC
Confidence            34555555     457888887752      245677888888999999999999999998888777 899999999999


Q ss_pred             CcEEEEEcC
Q 017068           78 GGYLVISGP   86 (378)
Q Consensus        78 GG~lvis~p   86 (378)
                      ||++++...
T Consensus       151 gG~li~~~~  159 (239)
T PRK00216        151 GGRLVILEF  159 (239)
T ss_pred             CcEEEEEEe
Confidence            999988654

>PRK06202 hypothetical protein; Provisional

Probab=98.00  E-value=1.1e-05  Score=75.76  Aligned_cols=73  Identities=15%  Similarity=0.135  Sum_probs=56.3

Q ss_pred             cCCCCChHHHHHHHHHcC--CCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEc
Q 017068           11 FAPRDSHKAQIQFALERG--IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        11 ~ap~D~se~~vq~A~erg--~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      +...|.|+.|++.|+++.  ..+.+.++++..+++++++||+|+|+.+++|+.+++ ..+++|+.|++|  |.+++..
T Consensus        91 v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d  166 (232)
T PRK06202         91 VTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHND  166 (232)
T ss_pred             EEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence            334455679999998873  234566677778888999999999999999998754 479999999998  5555544

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.00  E-value=3.2e-06  Score=77.38  Aligned_cols=129  Identities=14%  Similarity=0.206  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccC--CCeeEEEeccCCCC-cchHHH----Hhhcc--cccc
Q 017068          203 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKS-STLSVI----YDRGL--IGVY  273 (378)
Q Consensus       203 ~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~--~~vwvmnv~p~~~~-~~l~~i----~eRGl--ig~~  273 (378)
                      ..|++.+-.=...+ ..+. +  .+|||+|||+|.++..|..  ...   .|+-.|.+ .++.++    -+.|+  +-+.
T Consensus        25 ~~~~~~~~d~i~~~-~~~~-~--~~vLDiGcGtG~~s~~la~~~~~~---~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i   97 (181)
T TIGR00138        25 EIWERHILDSLKLL-EYLD-G--KKVIDIGSGAGFPGIPLAIARPEL---KLTLLESNHKKVAFLREVKAELGLNNVEIV   97 (181)
T ss_pred             HHHHHHHHHHHHHH-HhcC-C--CeEEEecCCCCccHHHHHHHCCCC---eEEEEeCcHHHHHHHHHHHHHhCCCCeEEE
Confidence            45666654332222 2233 2  5899999999998876642  222   34556655 444433    23354  2212


Q ss_pred             -ccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCC-ceE
Q 017068          274 -HDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVR-WTA  351 (378)
Q Consensus       274 -~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~-W~~  351 (378)
                       .|..+ ++ ...+||+|-|.. +.            .+..++-++.|+|+|||.+++........++..+.+++| |..
T Consensus        98 ~~d~~~-~~-~~~~fD~I~s~~-~~------------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~  162 (181)
T TIGR00138        98 NGRAED-FQ-HEEQFDVITSRA-LA------------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGV  162 (181)
T ss_pred             ecchhh-cc-ccCCccEEEehh-hh------------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCc
Confidence             22222 22 357999998754 22            235677788999999999999987777777777766644 444


Q ss_pred             EE
Q 017068          352 AV  353 (378)
Q Consensus       352 ~~  353 (378)
                      ..
T Consensus       163 ~~  164 (181)
T TIGR00138       163 EP  164 (181)
T ss_pred             eE
Confidence            43

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.00  E-value=2.7e-06  Score=84.68  Aligned_cols=93  Identities=18%  Similarity=0.189  Sum_probs=59.7

Q ss_pred             eEEEecCCcceeeeeeccCCC-eeEEEeccCCCC-cchH-H-HHhhcc-----ccccccccccCCCCCCccccccccCcc
Q 017068          226 RNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLS-V-IYDRGL-----IGVYHDWCEPFSTYPRTYDLIHVSGIE  296 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~-~~l~-~-i~eRGl-----ig~~~~w~~~f~typrtyDliH~~~~~  296 (378)
                      +.|||+|||.|.|+..|+... -.   |+-.|.+ .++. . +..+.+     +-+...=-+.+|. +.+||+|+|.+++
T Consensus       124 ~~VLDIGCG~G~~~~~la~~g~~~---V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl  199 (322)
T PRK15068        124 RTVLDVGCGNGYHMWRMLGAGAKL---VVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL  199 (322)
T ss_pred             CEEEEeccCCcHHHHHHHHcCCCE---EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence            689999999999998887643 22   3444433 2221 1 111111     1111111123444 7899999998887


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      .+..         +...+|-++-|+|+|||.+|+.
T Consensus       200 ~H~~---------dp~~~L~~l~~~LkpGG~lvl~  225 (322)
T PRK15068        200 YHRR---------SPLDHLKQLKDQLVPGGELVLE  225 (322)
T ss_pred             hccC---------CHHHHHHHHHHhcCCCcEEEEE
Confidence            6432         3467899999999999999986

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.99  E-value=3e-06  Score=86.29  Aligned_cols=93  Identities=19%  Similarity=0.298  Sum_probs=66.0

Q ss_pred             eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhhc--c-c-cccccccccCCCCCCccccccccCccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRG--L-I-GVYHDWCEPFSTYPRTYDLIHVSGIESLI  299 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eRG--l-i-g~~~~w~~~f~typrtyDliH~~~~~~~~  299 (378)
                      ..|||+|||.|+++..+... +.   .|+-.|.+ .++..+-+|.  + + -...|+.    ..+.+||.|.+..+|...
T Consensus       169 ~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~----~l~~~fD~Ivs~~~~ehv  241 (383)
T PRK11705        169 MRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGLPVEIRLQDYR----DLNGQFDRIVSVGMFEHV  241 (383)
T ss_pred             CEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccCeEEEEECchh----hcCCCCCEEEEeCchhhC
Confidence            47999999999999888754 44   55666655 8887777654  2 1 1122332    225789999998877643


Q ss_pred             cCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          300 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       300 ~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .       .-+...++-++.|+|+|||++++..
T Consensus       242 g-------~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        242 G-------PKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             C-------hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            1       2234678999999999999999963

>PRK14968 putative methyltransferase; Provisional

Probab=97.97  E-value=6.3e-06  Score=73.60  Aligned_cols=140  Identities=17%  Similarity=0.174  Sum_probs=84.6

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh---------hccccccccccccCCCCCCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD---------RGLIGVYHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e---------RGlig~~~~w~~~f~typrtyDliH~~~~  295 (378)
                      ..|||+|||.|.++..|..++.   +|.-.|.+ .++..+.+         ||+.-..+|+.+.++.  .+||+|-++.-
T Consensus        25 ~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n~p   99 (188)
T PRK14968         25 DRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFNPP   99 (188)
T ss_pred             CEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEECCC
Confidence            4799999999999999987754   66666655 56655522         2233345666665532  48999977654


Q ss_pred             cccccCCC-------------CCCCCCCccceeeeecccccCCCeEEEeC-CHHHHHHHHHHHhcCCceEEEecCCCCCC
Q 017068          296 ESLIKNPG-------------SNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVRWTAAVHDKEPGSN  361 (378)
Q Consensus       296 ~~~~~~~~-------------~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-~~~~~~~~~~~~~~l~W~~~~~~~~~~~~  361 (378)
                      +.... +.             .......+..++-++.|+|+|||.+++-- .....+++.+++...-|+......+.-..
T Consensus       100 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~  178 (188)
T PRK14968        100 YLPTE-EEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFPF  178 (188)
T ss_pred             cCCCC-chhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccCC
Confidence            43210 00             00001224567899999999999987653 23345667777777788765432222233


Q ss_pred             CCeEEEEEEe
Q 017068          362 GREKILVATK  371 (378)
Q Consensus       362 ~~e~~l~~~K  371 (378)
                      +.-.++..+|
T Consensus       179 ~~~~~~~~~~  188 (188)
T PRK14968        179 EELIVLELVK  188 (188)
T ss_pred             ceEEEEEEeC
Confidence            3444555443

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.94  E-value=7.4e-06  Score=78.26  Aligned_cols=115  Identities=15%  Similarity=0.143  Sum_probs=71.9

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccccccccccccCCCCCCccccccccCccccccCCCC
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGS  304 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~  304 (378)
                      ..|||+|||+|..+.++.....-  .|+..|.+ ..+..+-++.-.....+..+ ++.-..+||+|.|+-....      
T Consensus       121 ~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~~-~~~~~~~fD~Vvani~~~~------  191 (250)
T PRK00517        121 KTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNVY-LPQGDLKADVIVANILANP------  191 (250)
T ss_pred             CEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEE-EccCCCCcCEEEEcCcHHH------
Confidence            57999999999888777655331  24556654 66665554422111111110 1111127999998533221      


Q ss_pred             CCCCCCccceeeeecccccCCCeEEEeCCH-HHHHHHHHHHhcCCceEEEec
Q 017068          305 NKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWTAAVHD  355 (378)
Q Consensus       305 ~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-~~~~~~~~~~~~l~W~~~~~~  355 (378)
                            +..++-++-|+|+|||++|+++.. +..+.+.+.++..-++.....
T Consensus       192 ------~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~  237 (250)
T PRK00517        192 ------LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVL  237 (250)
T ss_pred             ------HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEE
Confidence                  245777999999999999999753 456677777888888876543

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=97.94  E-value=1.5e-05  Score=77.71  Aligned_cols=74  Identities=11%  Similarity=0.236  Sum_probs=54.7

Q ss_pred             CeEEEecCCCCChHHHHHHHHH----cCCCeEEEEcccCCCCCCCCceeEEEecCccccccCC-hHHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALE----RGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~e----rg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~-~~~~L~Ev~RVLkPGG   79 (378)
                      .|++++++     +.+++.|++    .++++.+...|....++ +++||+|+|..+++|.... ...+++++.|+|||||
T Consensus       144 ~V~avD~s-----~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG  217 (287)
T PRK12335        144 DVTAVDIN-----QQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGG  217 (287)
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCc
Confidence            45555554     577776654    46666677777766666 7899999999988776533 2589999999999999


Q ss_pred             EEEEE
Q 017068           80 YLVIS   84 (378)
Q Consensus        80 ~lvis   84 (378)
                      ++++.
T Consensus       218 ~~l~v  222 (287)
T PRK12335        218 YNLIV  222 (287)
T ss_pred             EEEEE
Confidence            97653

>TIGR00740 methyltransferase, putative

Probab=97.94  E-value=5.2e-06  Score=78.25  Aligned_cols=95  Identities=12%  Similarity=0.211  Sum_probs=63.1

Q ss_pred             eEEEecCCcceeeeeeccCC----CeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCCCCCCccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD----PVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFSTYPRTYDLIHV  292 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~----~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~typrtyDliH~  292 (378)
                      ..|||+|||.|.++..|..+    +.   +++-.|.+ .++..+-++    +.   +- +..|.++ ++ + ..+|++.+
T Consensus        55 ~~iLDlGcG~G~~~~~l~~~~~~p~~---~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~-~~~d~v~~  128 (239)
T TIGR00740        55 SNVYDLGCSRGAATLSARRNINQPNV---KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-VE-I-KNASMVIL  128 (239)
T ss_pred             CEEEEecCCCCHHHHHHHHhcCCCCC---eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CC-C-CCCCEEee
Confidence            47999999999998877653    33   45666655 677665443    21   11 2223332 22 1 35899998


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      ...+..+.      . -....+|-|+.|+|+|||.+++.|.
T Consensus       129 ~~~l~~~~------~-~~~~~~l~~i~~~LkpgG~l~i~d~  162 (239)
T TIGR00740       129 NFTLQFLP------P-EDRIALLTKIYEGLNPNGVLVLSEK  162 (239)
T ss_pred             ecchhhCC------H-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence            88776553      1 1135789999999999999999974

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.93  E-value=2.1e-06  Score=81.89  Aligned_cols=141  Identities=16%  Similarity=0.190  Sum_probs=97.2

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccc-cccccccccCC--CCCCccccccccCc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLI-GVYHDWCEPFS--TYPRTYDLIHVSGI  295 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGli-g~~~~w~~~f~--typrtyDliH~~~~  295 (378)
                      .+.|..|.++|+|||+|-+|-+|.+..-   -+.=+|-+ |+|..+.|+|+- ..+|-=-..|.  .-+.-||||.+..+
T Consensus       121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV  197 (287)
T COG4976         121 ADLGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV  197 (287)
T ss_pred             ccCCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence            4556799999999999999999987643   33556767 999999999992 12221111143  45688999999999


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH----------------HHHHHHHHHHhcCCceEEEe-----
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----------------EVIDKVSRIANTVRWTAAVH-----  354 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~----------------~~~~~~~~~~~~l~W~~~~~-----  354 (378)
                      |.++-         +++.++.=..+.|.|||.|+++-..                .--..|....++---++..+     
T Consensus       198 l~YlG---------~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tti  268 (287)
T COG4976         198 LPYLG---------ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTI  268 (287)
T ss_pred             HHhhc---------chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccc
Confidence            99763         5788999999999999999998310                11234555555555555432     


Q ss_pred             cCCCCCCCCeEEEEEEec
Q 017068          355 DKEPGSNGREKILVATKS  372 (378)
Q Consensus       355 ~~~~~~~~~e~~l~~~K~  372 (378)
                      -.+.|.-....+.|++|+
T Consensus       269 R~d~g~pv~G~L~iark~  286 (287)
T COG4976         269 RRDAGEPVPGILVIARKK  286 (287)
T ss_pred             hhhcCCCCCCceEEEecC
Confidence            223333344567777764

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.93  E-value=1.7e-06  Score=80.72  Aligned_cols=111  Identities=18%  Similarity=0.248  Sum_probs=71.3

Q ss_pred             HHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcccccccccccc-CCC-C-CCcc
Q 017068          212 YKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEP-FST-Y-PRTY  287 (378)
Q Consensus       212 Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~-f~t-y-prty  287 (378)
                      |-..|.-.+..+++++++++|||-|-|.+.|..+--   .++..|.+ .-|..+-+|--=--.-+|... +|. . +.+|
T Consensus        31 ~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~F  107 (201)
T PF05401_consen   31 YRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRF  107 (201)
T ss_dssp             HHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-E
T ss_pred             HHHHHHHhcCccccceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCe
Confidence            333333237889999999999999999999987743   45566655 566666555331011122221 111 1 3899


Q ss_pred             ccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          288 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       288 DliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      ||||++-++-++.      +.-.+..++-.+...|+|||.+|+-
T Consensus       108 DLIV~SEVlYYL~------~~~~L~~~l~~l~~~L~pgG~LV~g  145 (201)
T PF05401_consen  108 DLIVLSEVLYYLD------DAEDLRAALDRLVAALAPGGHLVFG  145 (201)
T ss_dssp             EEEEEES-GGGSS------SHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eEEEEehHhHcCC------CHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            9999999998886      3344556788888999999999995

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.90  E-value=7.5e-07  Score=72.20  Aligned_cols=90  Identities=21%  Similarity=0.289  Sum_probs=48.7

Q ss_pred             EecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cccc--ccc-cccccCCCCC-CccccccccCccccc
Q 017068          229 MDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG--VYH-DWCEPFSTYP-RTYDLIHVSGIESLI  299 (378)
Q Consensus       229 lDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig--~~~-~w~~~f~typ-rtyDliH~~~~~~~~  299 (378)
                      ||+|||+|.++..|+++- -...++-.|.+ .++..+.+|    +...  ... +-.+.+...+ .+||+|.+..++..+
T Consensus         1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred             CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence            799999999999998772 22255666655 666333333    2110  111 1111123333 599999999999876


Q ss_pred             cCCCCCCCCCCccceeeeecccccCCCeE
Q 017068          300 KNPGSNKNSCSLVDLMVEMDRMLRPEGTV  328 (378)
Q Consensus       300 ~~~~~~~~~c~~~~~l~EmDRiLRPgG~~  328 (378)
                      .         .+..+|-.+-|+|+|||.+
T Consensus        80 ~---------~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   80 E---------DIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             S----------HHHHHHHHTTT-TSS-EE
T ss_pred             h---------hHHHHHHHHHHHcCCCCCC
Confidence            3         4568999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR00452 methyltransferase, putative

Probab=97.90  E-value=8e-06  Score=81.25  Aligned_cols=94  Identities=17%  Similarity=0.112  Sum_probs=59.5

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchH-HHHhhcc------ccccccccccCCCCCCccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLS-VIYDRGL------IGVYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~-~i~eRGl------ig~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      +.|||+|||+|.++..++....-  .|+-.|.+ .++. +-.-|-+      +....-=-+.++. +.+||+|-|.+++.
T Consensus       123 ~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~  199 (314)
T TIGR00452       123 RTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLY  199 (314)
T ss_pred             CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhh
Confidence            68999999999998887765431  23444544 3332 1111111      1111100122332 35899999998887


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      ++.         +...+|-|+-|+|||||.+|+.
T Consensus       200 H~~---------dp~~~L~el~r~LkpGG~Lvle  224 (314)
T TIGR00452       200 HRK---------SPLEHLKQLKHQLVIKGELVLE  224 (314)
T ss_pred             ccC---------CHHHHHHHHHHhcCCCCEEEEE
Confidence            543         4468999999999999999986

Known examples to date are restricted to the proteobacteria.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.89  E-value=3.9e-05  Score=73.18  Aligned_cols=141  Identities=19%  Similarity=0.310  Sum_probs=80.3

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh---cc---cc-ccccccccCCCCCCccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR---GL---IG-VYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR---Gl---ig-~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      .+|||+|||.|.++.+|....- ...++-.|.+ ..+..+-++   +.   +- +..|+.++++  +.+||+|.++--+.
T Consensus       110 ~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy~  186 (275)
T PRK09328        110 LRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPYI  186 (275)
T ss_pred             CEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCCcC
Confidence            4699999999999988875420 1145666655 555554443   22   11 2234444332  37899998864332


Q ss_pred             cccC-----CCCCCCC------------CCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEecCCCCC
Q 017068          298 LIKN-----PGSNKNS------------CSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGS  360 (378)
Q Consensus       298 ~~~~-----~~~~~~~------------c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~~~~~~~  360 (378)
                      ....     ++.....            -.+..++-++-++|+|||++++.-....-..+++++++..+.......+  -
T Consensus       187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d--~  264 (275)
T PRK09328        187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKD--L  264 (275)
T ss_pred             CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecC--C
Confidence            1100     0000000            0013466677799999999999644444456777776666653222122  2


Q ss_pred             CCCeEEEEEEe
Q 017068          361 NGREKILVATK  371 (378)
Q Consensus       361 ~~~e~~l~~~K  371 (378)
                      .+.+++++++|
T Consensus       265 ~~~~r~~~~~~  275 (275)
T PRK09328        265 AGRDRVVLGRR  275 (275)
T ss_pred             CCCceEEEEEC
Confidence            36788998865

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.87  E-value=5.2e-06  Score=75.57  Aligned_cols=133  Identities=14%  Similarity=0.136  Sum_probs=69.1

Q ss_pred             eEEEecCCcceeeeeeccCC-----CeeEEEeccCCCCcchHHHHhhccccccccccccC------CCC-CCcccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPF------STY-PRTYDLIHVS  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-----~vwvmnv~p~~~~~~l~~i~eRGlig~~~~w~~~f------~ty-prtyDliH~~  293 (378)
                      .+|||+|||+|+++..+..+     .|+.     .|-..+..   ..++--+..|..+..      ..+ +.+||+|-++
T Consensus        34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~-----vDis~~~~---~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~  105 (188)
T TIGR00438        34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIA-----VDLQPMKP---IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD  105 (188)
T ss_pred             CEEEEecCCCCHHHHHHHHHhCCCceEEE-----Eecccccc---CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence            48999999999998776532     1433     23221110   012221223443321      012 3689999886


Q ss_pred             Ccc--ccccCCCCCCCCCCccceeeeecccccCCCeEEEeC-CH----HHHHHHHHHHhcCCceEEEe-cCCCCCCCCeE
Q 017068          294 GIE--SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SP----EVIDKVSRIANTVRWTAAVH-DKEPGSNGREK  365 (378)
Q Consensus       294 ~~~--~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-~~----~~~~~~~~~~~~l~W~~~~~-~~~~~~~~~e~  365 (378)
                      ...  +...+.......+.++.+|-++-|+|+|||.+++.. ..    +++..+++   .+ |.+... |.-....+.|+
T Consensus       106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~~-~~~~~~~~~~~~~~~~~~  181 (188)
T TIGR00438       106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---LF-EKVKVTKPQASRKRSAEV  181 (188)
T ss_pred             CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---hh-ceEEEeCCCCCCcccceE
Confidence            431  111000000011223578899999999999999942 22    33333333   22 444442 22223346799


Q ss_pred             EEEEE
Q 017068          366 ILVAT  370 (378)
Q Consensus       366 ~l~~~  370 (378)
                      ++||.
T Consensus       182 ~~~~~  186 (188)
T TIGR00438       182 YIVAK  186 (188)
T ss_pred             EEEEe
Confidence            99996

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.85  E-value=2.9e-05  Score=72.56  Aligned_cols=71  Identities=23%  Similarity=0.170  Sum_probs=52.0

Q ss_pred             CChHHHHHHHHHcC---CCeEEEEcccCCCCCCCCceeEEEecCccccccCCh--HHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALERG---IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN--ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~erg---~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~--~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |+|+..|+.|++|-   ..+.+.+++... ..|++.||+|+++.+++++.+.+  ..++..+...|+|||.+++...
T Consensus        72 Dis~~Al~~Ar~Rl~~~~~V~~~~~dvp~-~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen   72 DISPRALARARERLAGLPHVEWIQADVPE-FWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             ES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eCCHHHHHHHHHhcCCCCCeEEEECcCCC-CCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            45579999999983   236778877644 46899999999999999887632  4788999999999999999754

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=97.80  E-value=4.3e-06  Score=79.66  Aligned_cols=96  Identities=9%  Similarity=0.182  Sum_probs=62.9

Q ss_pred             eEEEecCCcceeeeeeccC---CCeeEEEeccCCCC-cchHHHHhh----cc---ccccccccccCCCCCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYDR----GL---IGVYHDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~---~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~~~~w~~~f~typrtyDliH~~~  294 (378)
                      ..|||+|||+|.++..|..   .+-+  .|+-.|.+ .++..+-+|    |+   +-++..-.+.++ + ..||+|-+..
T Consensus        58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-~-~~~D~vv~~~  133 (247)
T PRK15451         58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-I-ENASMVVLNF  133 (247)
T ss_pred             CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-C-CCCCEEehhh
Confidence            4699999999999877754   2221  56677765 777766554    22   222211112222 1 3589998877


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ++..+.       ......++-||-|+|+|||.+++.|
T Consensus       134 ~l~~l~-------~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        134 TLQFLE-------PSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             HHHhCC-------HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            766543       1123579999999999999999986

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.80  E-value=2.9e-06  Score=79.30  Aligned_cols=135  Identities=15%  Similarity=0.183  Sum_probs=69.8

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCCcchHHHHhhcccccccccccc---------CCCCCCcccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEP---------FSTYPRTYDLIHVS  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~~~l~~i~eRGlig~~~~w~~~---------f~typrtyDliH~~  293 (378)
                      .+|||+|||+|+|+..|.++   .--|   +..|-..+.++   .|+.-+..|....         +.  +.+||+|.|+
T Consensus        53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V---~aVDi~~~~~~---~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~S~  124 (209)
T PRK11188         53 MTVVDLGAAPGGWSQYAVTQIGDKGRV---IACDILPMDPI---VGVDFLQGDFRDELVLKALLERVG--DSKVQVVMSD  124 (209)
T ss_pred             CEEEEEcccCCHHHHHHHHHcCCCceE---EEEecccccCC---CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEecC
Confidence            47999999999998777543   1222   22222111110   1222222333321         22  3689999986


Q ss_pred             CccccccCCCC--CCCCCCccceeeeecccccCCCeEEEeC-----CHHHHHHHHHHHhcCCceEEEecCCCCCCCCeEE
Q 017068          294 GIESLIKNPGS--NKNSCSLVDLMVEMDRMLRPEGTVVVRD-----SPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKI  366 (378)
Q Consensus       294 ~~~~~~~~~~~--~~~~c~~~~~l~EmDRiLRPgG~~ii~d-----~~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~  366 (378)
                      -......++..  +..-+.++.+|-|+-|+|+|||.+++-.     ..+.+..+++..++...-.   +...-..+.|.+
T Consensus       125 ~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~~K---p~ssr~~s~e~~  201 (209)
T PRK11188        125 MAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRK---PDSSRARSREVY  201 (209)
T ss_pred             CCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEEEC---CccccccCceeE
Confidence            43221110000  0000012468899999999999999942     1334444444333333322   222222467999


Q ss_pred             EEEEe
Q 017068          367 LVATK  371 (378)
Q Consensus       367 l~~~K  371 (378)
                      ++|..
T Consensus       202 ~~~~~  206 (209)
T PRK11188        202 IVATG  206 (209)
T ss_pred             EEeec
Confidence            99974

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.77  E-value=0.00044  Score=73.02  Aligned_cols=124  Identities=8%  Similarity=0.072  Sum_probs=72.0

Q ss_pred             CCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-----cchHHHHhhcccc--ccc-cccccCCCCC-Ccccccc
Q 017068          223 PAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-----STLSVIYDRGLIG--VYH-DWCEPFSTYP-RTYDLIH  291 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-----~~l~~i~eRGlig--~~~-~w~~~f~typ-rtyDliH  291 (378)
                      ..-..++|+|||.|.|.+.+...  +.   |++-.+-.     ..+..+.++||-.  ++. +...-..-+| .+.|-||
T Consensus       346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~---~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~  422 (506)
T PRK01544        346 EKRKVFLEIGFGMGEHFINQAKMNPDA---LFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIY  422 (506)
T ss_pred             CCCceEEEECCCchHHHHHHHHhCCCC---CEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEE
Confidence            34689999999999999998743  34   33333322     3345566777621  111 2211112233 7888887


Q ss_pred             ccCcc-ccccCCCCCCCCCCccceeeeecccccCCCeEEEe-CCHHHHHHHHHH-HhcCCceE
Q 017068          292 VSGIE-SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRI-ANTVRWTA  351 (378)
Q Consensus       292 ~~~~~-~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-d~~~~~~~~~~~-~~~l~W~~  351 (378)
                      ..  | ..|--....+.|=-=...|-++-|+|+|||.+.+. |..++.+.+.+. -+.-+++.
T Consensus       423 i~--FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~  483 (506)
T PRK01544        423 IL--FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFEI  483 (506)
T ss_pred             EE--CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEe
Confidence            63  4 24421122233333357889999999999999776 556666665444 33334543

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=97.76  E-value=5e-05  Score=70.40  Aligned_cols=76  Identities=21%  Similarity=0.293  Sum_probs=57.0

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEccc-CCCC--CCCCceeEEEecCccccccCC--------hHHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGT-RRLP--FPAFSFDIVHCSRCLIPFTAY--------NATYL   68 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~da-e~LP--fpd~SFD~V~cs~~l~hw~~~--------~~~~L   68 (378)
                      .|+++++.     +.+++.|+++    +. ++.+..+|+ +.++  +++++||+|++.++. +|...        ...++
T Consensus        66 ~v~gVD~s-----~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~-p~~~~~~~~~~~~~~~~l  139 (202)
T PRK00121         66 NFIGIEVH-----EPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPD-PWPKKRHHKRRLVQPEFL  139 (202)
T ss_pred             cEEEEEec-----hHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCC-CCCCccccccccCCHHHH
Confidence            46666666     4777777653    33 467788888 7887  889999999987654 34221        13789


Q ss_pred             HHHhhcccCCcEEEEEcC
Q 017068           69 IEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        69 ~Ev~RVLkPGG~lvis~p   86 (378)
                      +++.|+|||||+|+++.+
T Consensus       140 ~~i~~~LkpgG~l~i~~~  157 (202)
T PRK00121        140 ALYARKLKPGGEIHFATD  157 (202)
T ss_pred             HHHHHHcCCCCEEEEEcC
Confidence            999999999999999875

>PTZ00146 fibrillarin; Provisional

Probab=97.71  E-value=3.9e-05  Score=75.74  Aligned_cols=99  Identities=10%  Similarity=0.141  Sum_probs=61.7

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCC-----CeeEEEeccCCCCcchHHHHhh-ccccccccccccC--CCCCCcccccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYDR-GLIGVYHDWCEPF--STYPRTYDLIH  291 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~-----~vwvmnv~p~~~~~~l~~i~eR-Glig~~~~w~~~f--~typrtyDliH  291 (378)
                      |+.|  -+|||+|||+|+|+..|.+.     .|..+-+.|.-..+.+.++-+| .++.+..|-+.+.  .....++|+|-
T Consensus       130 IkpG--~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~  207 (293)
T PTZ00146        130 IKPG--SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIF  207 (293)
T ss_pred             cCCC--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEE
Confidence            5555  37999999999999888754     2443333221111355555554 5666777766542  11124789886


Q ss_pred             ccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      ++-.. .        +  ....+++|+.|+|+|||+++|.
T Consensus       208 ~Dva~-p--------d--q~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        208 ADVAQ-P--------D--QARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             EeCCC-c--------c--hHHHHHHHHHHhccCCCEEEEE
Confidence            65321 1        1  1235677999999999999994

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=97.71  E-value=2.1e-05  Score=71.88  Aligned_cols=98  Identities=18%  Similarity=0.197  Sum_probs=61.1

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc----cc-ccccccccCCCCCCccccccccCcccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL----IG-VYHDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl----ig-~~~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      =.+|||+|||.|.++.++...--=.-.++-.|.. ..+..+-++.-    +- ...|-.+ ++..+.+||+|++...+..
T Consensus        40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~~~  118 (223)
T TIGR01934        40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGLRN  118 (223)
T ss_pred             CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeeeCC
Confidence            4589999999999988876432100133444443 55555555431    11 1122222 2222368999999766653


Q ss_pred             ccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .         .....++-++.++|+|||++++.+
T Consensus       119 ~---------~~~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934       119 V---------TDIQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             c---------ccHHHHHHHHHHHcCCCcEEEEEE
Confidence            3         235678999999999999999864

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.70  E-value=7.9e-06  Score=78.33  Aligned_cols=115  Identities=18%  Similarity=0.076  Sum_probs=81.1

Q ss_pred             CCCeeEEEecCCcceeeeeecc-CCCeeEEEeccCCCC-cchHHHHhhcccccccccc--------ccCCCCCCcccccc
Q 017068          222 TPAIRNIMDMNAFFGGFAAALT-SDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWC--------EPFSTYPRTYDLIH  291 (378)
Q Consensus       222 ~~~iR~vlDm~ag~g~faa~L~-~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~--------~~f~typrtyDliH  291 (378)
                      ..+-|.+.|+|||.| +||..+ ++.-   +|+.+|.+ .||+++ ..+.-=+||+--        +.|.--+.|.|||-
T Consensus        31 ~~~h~~a~DvG~G~G-qa~~~iae~~k---~VIatD~s~~mL~~a-~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~  105 (261)
T KOG3010|consen   31 TEGHRLAWDVGTGNG-QAARGIAEHYK---EVIATDVSEAMLKVA-KKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLIT  105 (261)
T ss_pred             CCCcceEEEeccCCC-cchHHHHHhhh---hheeecCCHHHHHHh-hcCCCcccccCCccccccccccccCCCcceeeeh
Confidence            345679999999999 777664 5555   67999987 999844 444433444433        33444479999999


Q ss_pred             ccCccccccCCCCCCCCCCccceeeeecccccCCC-eE---EEeCCHHHHHHHHHHHhcCCceE
Q 017068          292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEG-TV---VVRDSPEVIDKVSRIANTVRWTA  351 (378)
Q Consensus       292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG-~~---ii~d~~~~~~~~~~~~~~l~W~~  351 (378)
                      |..|+.-          |+++..+-|+-|||||.| .+   ..+|..-.+.++..+..+++|+.
T Consensus       106 ~Aqa~HW----------Fdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~~  159 (261)
T KOG3010|consen  106 AAQAVHW----------FDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDST  159 (261)
T ss_pred             hhhhHHh----------hchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhcc
Confidence            9999872          567899999999999999 32   22444445666666777777753

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.69  E-value=2.4e-05  Score=72.22  Aligned_cols=124  Identities=14%  Similarity=0.144  Sum_probs=72.4

Q ss_pred             ccccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc--
Q 017068          197 VFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL--  269 (378)
Q Consensus       197 ~F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--  269 (378)
                      .|....+.=..++....+.+...-....--+|||+|||.|.++..+.....   .++-.|.+ ..+..+-++    |+  
T Consensus        18 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~   94 (224)
T TIGR01983        18 KFKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLK   94 (224)
T ss_pred             cHHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence            355555554445544444333110011234799999999999888765543   24444544 444444332    22  


Q ss_pred             cccc-ccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          270 IGVY-HDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       270 ig~~-~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      +-.. .+..+-....+.+||+|.+..++....         +...+|-++.|+|+|||++++..
T Consensus        95 ~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~---------~~~~~l~~~~~~L~~gG~l~i~~  149 (224)
T TIGR01983        95 IEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVP---------DPQAFIRACAQLLKPGGILFFST  149 (224)
T ss_pred             eEEEeCCHHHhhcCCCCCccEEEehhHHHhCC---------CHHHHHHHHHHhcCCCcEEEEEe
Confidence            1111 111111112257899999988776443         34678999999999999999875

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.68  E-value=7.3e-05  Score=76.20  Aligned_cols=70  Identities=24%  Similarity=0.299  Sum_probs=54.6

Q ss_pred             CCChHHHHHHHHHcC--CCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           14 RDSHKAQIQFALERG--IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        14 ~D~se~~vq~A~erg--~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .|+|+.|++.|+++.  ..+.+...|...+   +++||.|++..+++|..... ..+++++.|+|||||++++...
T Consensus       196 iDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i  268 (383)
T PRK11705        196 VTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI  268 (383)
T ss_pred             EeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            355579999999873  4455666676554   57999999999888875532 4899999999999999999754

>PRK04266 fibrillarin; Provisional

Probab=97.68  E-value=5.7e-05  Score=71.76  Aligned_cols=138  Identities=15%  Similarity=0.131  Sum_probs=73.2

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh-----ccccccccccccC--CCCCCcccccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR-----GLIGVYHDWCEPF--STYPRTYDLIH  291 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR-----Glig~~~~w~~~f--~typrtyDliH  291 (378)
                      +..|.  .|||+|||+|+++..|.+.-- .=.|...|.+ .+|..+.++     .+.-+..|-.++.  ...+.+||.|-
T Consensus        70 i~~g~--~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~  146 (226)
T PRK04266         70 IKKGS--KVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY  146 (226)
T ss_pred             CCCCC--EEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE
Confidence            45553  699999999999988876410 0024555654 555533322     2233344444321  12245688865


Q ss_pred             ccCccccccCCCCCCCCCCccceeeeecccccCCCeEEE------eCC----HHHHHHHHHHHhcCCceEE-EecCCCCC
Q 017068          292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV------RDS----PEVIDKVSRIANTVRWTAA-VHDKEPGS  360 (378)
Q Consensus       292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii------~d~----~~~~~~~~~~~~~l~W~~~-~~~~~~~~  360 (378)
                      ++... .        +  ....+|-|+-|+|+|||.++|      -|.    ....++..+.+++-..+.. ..+.... 
T Consensus       147 ~d~~~-p--------~--~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~-  214 (226)
T PRK04266        147 QDVAQ-P--------N--QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPY-  214 (226)
T ss_pred             ECCCC-h--------h--HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCC-
Confidence            32110 0        0  012356799999999999999      331    2222233344554445543 2333221 


Q ss_pred             CCCeEEEEEEec
Q 017068          361 NGREKILVATKS  372 (378)
Q Consensus       361 ~~~e~~l~~~K~  372 (378)
                      ..++-.++++|+
T Consensus       215 ~~~h~~~v~~~~  226 (226)
T PRK04266        215 HKDHAAVVARKK  226 (226)
T ss_pred             cCCeEEEEEEcC
Confidence            235666777664

>PLN03075 nicotianamine synthase; Provisional

Probab=97.67  E-value=6.9e-05  Score=74.10  Aligned_cols=72  Identities=13%  Similarity=0.187  Sum_probs=55.5

Q ss_pred             CCCChHHHHHHHHHcC-----C--CeEEEEcccCCCCCCCCceeEEEecCcccccc-CChHHHHHHHhhcccCCcEEEEE
Q 017068           13 PRDSHKAQIQFALERG-----I--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVIS   84 (378)
Q Consensus        13 p~D~se~~vq~A~erg-----~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~-~~~~~~L~Ev~RVLkPGG~lvis   84 (378)
                      ..|.++++++.|++.-     +  .+.|..+|+..++-..+.||+|+|. ++++|. ....++++++.|.|||||+|++.
T Consensus       154 giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr  232 (296)
T PLN03075        154 NFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLR  232 (296)
T ss_pred             EEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence            3455678888887742     2  3678888877654345789999998 899994 33359999999999999999987


Q ss_pred             c
Q 017068           85 G   85 (378)
Q Consensus        85 ~   85 (378)
                      .
T Consensus       233 ~  233 (296)
T PLN03075        233 S  233 (296)
T ss_pred             c
Confidence            5

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.65  E-value=7.9e-05  Score=69.56  Aligned_cols=72  Identities=21%  Similarity=0.311  Sum_probs=56.9

Q ss_pred             CCChHHHHHHHHHc----CCCeEEEEcccCCCC-CCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           14 RDSHKAQIQFALER----GIPAFVAMLGTRRLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~~~~~~v~dae~LP-fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .|.++.+++.|+++    +..+.+...+...++ .+++.||+|+|+.++.|..+.. .+++++.++|+|||+++++.+
T Consensus        76 iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~-~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134         76 IDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPA-SFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             EcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHH-HHHHHHHHHcCCCcEEEEEec
Confidence            35566778777764    444566666766665 4568999999999999888776 899999999999999999865

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=97.64  E-value=1.3e-05  Score=76.97  Aligned_cols=94  Identities=16%  Similarity=0.182  Sum_probs=59.1

Q ss_pred             eEEEecCCcceeeeeecc---CCCeeEEEeccCCCC-cchHHHHhh----cccc--c-cccccccCCCCCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALT---SDPVWVMNVVPARKS-STLSVIYDR----GLIG--V-YHDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~---~~~vwvmnv~p~~~~-~~l~~i~eR----Glig--~-~~~w~~~f~typrtyDliH~~~  294 (378)
                      .+|||+|||.|.++..+.   ....   .|+-.|.+ .++..+-++    |+-.  . ..+. +.++..+.+||+|++..
T Consensus        79 ~~VLDiG~G~G~~~~~~a~~~g~~~---~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         79 ETVLDLGSGGGFDCFLAARRVGPTG---KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EALPVADNSVDVIISNC  154 (272)
T ss_pred             CEEEEeCCCCCHHHHHHHHHhCCCC---EEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCceeEEEEcC
Confidence            499999999987543322   2222   34556654 667666554    3211  1 1222 22332237999999887


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ++....         +...++-|+-|+|||||.+++.+
T Consensus       155 v~~~~~---------d~~~~l~~~~r~LkpGG~l~i~~  183 (272)
T PRK11873        155 VINLSP---------DKERVFKEAFRVLKPGGRFAISD  183 (272)
T ss_pred             cccCCC---------CHHHHHHHHHHHcCCCcEEEEEE
Confidence            665432         23578999999999999999974

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.63  E-value=3.1e-05  Score=72.55  Aligned_cols=123  Identities=19%  Similarity=0.264  Sum_probs=75.0

Q ss_pred             eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHh----hcc--cc-ccccccccCCCCCCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYD----RGL--IG-VYHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~e----RGl--ig-~~~~w~~~f~typrtyDliH~~~~  295 (378)
                      .+|||+|||.|.|+.++...  ..   +++-.|.. ..+..+-+    .|+  +- ...|+.+.++  +.+||+|.|+--
T Consensus        89 ~~ilDig~G~G~~~~~l~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npP  163 (251)
T TIGR03534        89 LRVLDLGTGSGAIALALAKERPDA---RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVSNPP  163 (251)
T ss_pred             CeEEEEeCcHhHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEECCC
Confidence            47999999999999999864  22   45555544 44443332    343  11 2224444332  378999998654


Q ss_pred             cccccCCCCCCCCC-----------------CccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEE
Q 017068          296 ESLIKNPGSNKNSC-----------------SLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       296 ~~~~~~~~~~~~~c-----------------~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~  353 (378)
                      |........-....                 ....++-++-|+|+|||.+++.-......++++++++..++...
T Consensus       164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v~  238 (251)
T TIGR03534       164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADVE  238 (251)
T ss_pred             CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCceE
Confidence            44221000000000                 01256778899999999999987666667788888877776543

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=97.61  E-value=0.00042  Score=65.91  Aligned_cols=172  Identities=15%  Similarity=0.115  Sum_probs=107.2

Q ss_pred             cCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcCCCCC
Q 017068           11 FAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQW   90 (378)
Q Consensus        11 ~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~pp~~~   90 (378)
                      |...|.|.+|++.|+++.+.+.|..+|.... -|+..+|+++++.+++-.+++. ..|.-+..-|.|||.+.+..|. |+
T Consensus        57 i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w-~p~~~~dllfaNAvlqWlpdH~-~ll~rL~~~L~Pgg~LAVQmPd-N~  133 (257)
T COG4106          57 ITGIDSSPAMLAKAAQRLPDATFEEADLRTW-KPEQPTDLLFANAVLQWLPDHP-ELLPRLVSQLAPGGVLAVQMPD-NL  133 (257)
T ss_pred             EeeccCCHHHHHHHHHhCCCCceecccHhhc-CCCCccchhhhhhhhhhccccH-HHHHHHHHhhCCCceEEEECCC-cc
Confidence            4567888999999999999999988887554 4678899999887764445555 9999999999999999998872 22


Q ss_pred             CccchHHHHHHHHHHHhceeeeccccceEEEeCCCCc-ccccccCCCCCCCCCCCCCCCcccccccccccccccCCC---
Q 017068           91 PKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGE-SCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVK---  166 (378)
Q Consensus        91 ~~~~~~w~~l~~l~~~lcw~~~~~~~~~~iw~Kp~~~-~c~~~~~~~~~~~c~~~~~~~~~wy~~~~~Ci~~~p~~~---  166 (378)
                      ..+  ....|.++++..-|.......  .+.+++... .-|-..  -.|--|.     -..|.+-   -.++++...   
T Consensus       134 dep--sH~~mr~~A~~~p~~~~l~~~--~~~r~~v~s~a~Yy~l--La~~~~r-----vDiW~T~---Y~h~l~~a~aIv  199 (257)
T COG4106         134 DEP--SHRLMRETADEAPFAQELGGR--GLTRAPLPSPAAYYEL--LAPLACR-----VDIWHTT---YYHQLPGADAIV  199 (257)
T ss_pred             Cch--hHHHHHHHHhcCchhhhhCcc--ccccCCCCCHHHHHHH--hCcccce-----eeeeeee---ccccCCCccchh
Confidence            211  134577788766665543322  224666653 333221  0112243     1234332   123344321   


Q ss_pred             cccccCCCCCCCccccCCCCcceecccCccccccchHHHHHHHHHHHHHhhh
Q 017068          167 GEYAVGTIPKWPQRLTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNV  218 (378)
Q Consensus       167 ~~~~~~~~~~WP~rl~~~p~~l~~~g~~~~~F~~d~~~w~~~v~~Y~~~~~~  218 (378)
                      +++.+..+.||=++                   -|.+.|++-.+.|...|..
T Consensus       200 dWvkgTgLrP~L~~-------------------L~e~~~~~FL~~Y~~~l~~  232 (257)
T COG4106         200 DWVKGTGLRPYLDR-------------------LDEEERQRFLDRYLALLAE  232 (257)
T ss_pred             hheeccccceeccc-------------------cCHHHHHHHHHHHHHHHHH
Confidence            12223233333222                   2578899999999998873

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.61  E-value=9.5e-05  Score=69.83  Aligned_cols=52  Identities=25%  Similarity=0.411  Sum_probs=36.2

Q ss_pred             EEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           33 VAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        33 ~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +.+.|..++|++|+++|+|++...|+  ..+....++|++|||||||.|.|+.-
T Consensus       108 Vtacdia~vPL~~~svDv~VfcLSLM--GTn~~~fi~EA~RvLK~~G~L~IAEV  159 (219)
T PF05148_consen  108 VTACDIANVPLEDESVDVAVFCLSLM--GTNWPDFIREANRVLKPGGILKIAEV  159 (219)
T ss_dssp             EEES-TTS-S--TT-EEEEEEES-----SS-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEecCccCcCCCCceeEEEEEhhhh--CCCcHHHHHHHHheeccCcEEEEEEe
Confidence            45678899999999999999866554  34445999999999999999999753

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.59  E-value=0.00011  Score=67.82  Aligned_cols=72  Identities=25%  Similarity=0.327  Sum_probs=56.8

Q ss_pred             CCChHHHHHHHHHc----CC-CeEEEEcccCCCCCC-CCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           14 RDSHKAQIQFALER----GI-PAFVAMLGTRRLPFP-AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~-~~~~~v~dae~LPfp-d~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .|.++.+++.|+++    +. .+.+...+++.++.+ .++||+|+|..+++|..+.. ..+.++.++|+|||+++++..
T Consensus        73 iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~-~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983        73 IDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQ-AFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             EeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHH-HHHHHHHHhcCCCcEEEEEec
Confidence            34456777777664    34 466777787777765 48999999999998887776 899999999999999998765

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.56  E-value=0.00014  Score=70.71  Aligned_cols=52  Identities=31%  Similarity=0.524  Sum_probs=42.9

Q ss_pred             EEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           33 VAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        33 ~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +.+.|..++|++|+|.|++++  ||.-...+-..+++|++|||||||.+.|+.-
T Consensus       214 V~~cDm~~vPl~d~svDvaV~--CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv  265 (325)
T KOG3045|consen  214 VIACDMRNVPLEDESVDVAVF--CLSLMGTNLADFIKEANRILKPGGLLYIAEV  265 (325)
T ss_pred             eeeccccCCcCccCcccEEEe--eHhhhcccHHHHHHHHHHHhccCceEEEEeh
Confidence            456788899999999999987  5544455555899999999999999999754

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.56  E-value=0.00028  Score=65.18  Aligned_cols=90  Identities=18%  Similarity=0.199  Sum_probs=62.8

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      .|++++     .++.|++.|+++    +++ +.+..++++.++. +++||+|+|..    +.+.+ ..++++.|+|||||
T Consensus        71 ~V~giD-----~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~----~~~~~-~~l~~~~~~LkpGG  139 (187)
T PRK00107         71 KVTLVD-----SLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA----VASLS-DLVELCLPLLKPGG  139 (187)
T ss_pred             eEEEEe-----CcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc----ccCHH-HHHHHHHHhcCCCe
Confidence            455554     446777666653    443 6778888888887 78999999864    23334 88999999999999


Q ss_pred             EEEEEcCCCCCCccchHHHHHHHHHHHhceeee
Q 017068           80 YLVISGPPVQWPKQDKEWADLQAVARALCYELI  112 (378)
Q Consensus        80 ~lvis~pp~~~~~~~~~w~~l~~l~~~lcw~~~  112 (378)
                      +|++...+.       .-.+++.+++.+.|...
T Consensus       140 ~lv~~~~~~-------~~~~l~~~~~~~~~~~~  165 (187)
T PRK00107        140 RFLALKGRD-------PEEEIAELPKALGGKVE  165 (187)
T ss_pred             EEEEEeCCC-------hHHHHHHHHHhcCceEe
Confidence            999875421       11346677777777643

>PRK06202 hypothetical protein; Provisional

Probab=97.53  E-value=5e-05  Score=71.26  Aligned_cols=103  Identities=12%  Similarity=0.148  Sum_probs=66.9

Q ss_pred             CCCCeeEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhhcc-cc--ccccccccCCCCCCcccccccc
Q 017068          221 GTPAIRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDRGL-IG--VYHDWCEPFSTYPRTYDLIHVS  293 (378)
Q Consensus       221 ~~~~iR~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eRGl-ig--~~~~w~~~f~typrtyDliH~~  293 (378)
                      ....-.+|||+|||+|.++..|...   .-...+|+..|.+ .++..+.++.- .+  ...-=.+.++.-+.+||+|-|+
T Consensus        57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~  136 (232)
T PRK06202         57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN  136 (232)
T ss_pred             CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence            3344568999999999988777531   1112367888876 88887776632 11  1111123344445899999999


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .+|.+..      +. .+..+|-||-|++|  |.+++.|
T Consensus       137 ~~lhh~~------d~-~~~~~l~~~~r~~~--~~~~i~d  166 (232)
T PRK06202        137 HFLHHLD------DA-EVVRLLADSAALAR--RLVLHND  166 (232)
T ss_pred             CeeecCC------hH-HHHHHHHHHHHhcC--eeEEEec
Confidence            9887664      11 13468999999999  5666655

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=97.53  E-value=1.3e-05  Score=74.57  Aligned_cols=93  Identities=20%  Similarity=0.279  Sum_probs=65.4

Q ss_pred             EEEecCCcceeeeeeccCCCeeEEEeccCCCC-c---ch-HHHHhhccc--cccccccccCCCCCCccccccccCccccc
Q 017068          227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-S---TL-SVIYDRGLI--GVYHDWCEPFSTYPRTYDLIHVSGIESLI  299 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~---~l-~~i~eRGli--g~~~~w~~~f~typrtyDliH~~~~~~~~  299 (378)
                      .+||+|||.|+-|-+|..++.   .|...|.+ .   .+ +++-+++|-  ....|..+ + .+|..||+|.+..+|-.+
T Consensus        33 ~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~-~-~~~~~yD~I~st~v~~fL  107 (192)
T PF03848_consen   33 KALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLND-F-DFPEEYDFIVSTVVFMFL  107 (192)
T ss_dssp             EEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCC-B-S-TTTEEEEEEESSGGGS
T ss_pred             cEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchh-c-cccCCcCEEEEEEEeccC
Confidence            799999999999999999998   66666654 2   23 445557772  23344433 2 346899999998888776


Q ss_pred             cCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          300 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       300 ~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      .       +-.+..++--|..-++||||+++-
T Consensus       108 ~-------~~~~~~i~~~m~~~~~pGG~~li~  132 (192)
T PF03848_consen  108 Q-------RELRPQIIENMKAATKPGGYNLIV  132 (192)
T ss_dssp             --------GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             C-------HHHHHHHHHHHHhhcCCcEEEEEE
Confidence            4       445677888899999999999883

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.53  E-value=0.00027  Score=66.54  Aligned_cols=75  Identities=17%  Similarity=0.128  Sum_probs=54.9

Q ss_pred             CCeEEEecCCCCChHHHHHHH-HHcC----------------CCeEEEEcccCCCCCC-CCceeEEEecCccccccCCh-
Q 017068            4 ENILTLSFAPRDSHKAQIQFA-LERG----------------IPAFVAMLGTRRLPFP-AFSFDIVHCSRCLIPFTAYN-   64 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A-~erg----------------~~~~~~v~dae~LPfp-d~SFD~V~cs~~l~hw~~~~-   64 (378)
                      .+|++++++|     ..++.| .+++                ..+.+.++|...++.. .+.||.|+-..+++|++... 
T Consensus        57 ~~V~gvD~S~-----~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R  131 (213)
T TIGR03840        57 HRVLGVELSE-----IAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMR  131 (213)
T ss_pred             CeEEEEeCCH-----HHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHH
Confidence            3678887775     555553 3333                3466788888777643 46799999888889987654 


Q ss_pred             HHHHHHHhhcccCCcEEEE
Q 017068           65 ATYLIEVDRLLRPGGYLVI   83 (378)
Q Consensus        65 ~~~L~Ev~RVLkPGG~lvi   83 (378)
                      ...++.+.++|||||++++
T Consensus       132 ~~~~~~l~~lLkpgG~~ll  150 (213)
T TIGR03840       132 QRYAAHLLALLPPGARQLL  150 (213)
T ss_pred             HHHHHHHHHHcCCCCeEEE
Confidence            5789999999999997554

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=97.52  E-value=2.6e-05  Score=78.44  Aligned_cols=116  Identities=11%  Similarity=0.019  Sum_probs=74.5

Q ss_pred             eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhhcc---ccccccccccCCCCCCccccccccCcccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGL---IGVYHDWCEPFSTYPRTYDLIHVSGIESLIK  300 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eRGl---ig~~~~w~~~f~typrtyDliH~~~~~~~~~  300 (378)
                      ..|||+|||+|.++..+.+. +-  -+|+-.|.+ +++..+-++.-   +-+.+.=-+.++..+.+||+|-+...+..+.
T Consensus       115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~  192 (340)
T PLN02490        115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP  192 (340)
T ss_pred             CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence            47999999999988776542 11  145566655 77776666521   1111111122333347999999988777654


Q ss_pred             CCCCCCCCCCccceeeeecccccCCCeEEEeCCH-----------------HHHHHHHHHHhcCCceEE
Q 017068          301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-----------------EVIDKVSRIANTVRWTAA  352 (378)
Q Consensus       301 ~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-----------------~~~~~~~~~~~~l~W~~~  352 (378)
                               +...+|-|+-|+|+|||.+++.+..                 ...+++.+++++.-++..
T Consensus       193 ---------d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V  252 (340)
T PLN02490        193 ---------DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV  252 (340)
T ss_pred             ---------CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence                     1246899999999999999886421                 023556667777777654

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.52  E-value=0.00018  Score=66.16  Aligned_cols=77  Identities=21%  Similarity=0.274  Sum_probs=55.2

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCC---CCCCceeEEEecCccccccCCh--------HHH
Q 017068            4 ENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP---FPAFSFDIVHCSRCLIPFTAYN--------ATY   67 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LP---fpd~SFD~V~cs~~l~hw~~~~--------~~~   67 (378)
                      .+|+++++.     +.+++.|+++    ++ .+.+..+|+..++   +++++||.|++.+. -+|+...        ...
T Consensus        41 ~~v~gvD~~-----~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p-dpw~k~~h~~~r~~~~~~  114 (194)
T TIGR00091        41 KNFLGIEIH-----TPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP-DPWPKKRHNKRRITQPHF  114 (194)
T ss_pred             CCEEEEEee-----HHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC-CcCCCCCccccccCCHHH
Confidence            467777776     4666666543    34 4667788887654   67789999998654 3454321        268


Q ss_pred             HHHHhhcccCCcEEEEEcC
Q 017068           68 LIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        68 L~Ev~RVLkPGG~lvis~p   86 (378)
                      ++++.|+|||||.|++.+.
T Consensus       115 l~~~~r~LkpgG~l~~~td  133 (194)
T TIGR00091       115 LKEYANVLKKGGVIHFKTD  133 (194)
T ss_pred             HHHHHHHhCCCCEEEEEeC
Confidence            9999999999999998764

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR03438 probable methyltransferase

Probab=97.52  E-value=4e-05  Score=75.38  Aligned_cols=112  Identities=14%  Similarity=0.204  Sum_probs=72.6

Q ss_pred             HHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh------cc--ccccc
Q 017068          207 RRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR------GL--IGVYH  274 (378)
Q Consensus       207 ~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR------Gl--ig~~~  274 (378)
                      .-.+.+.+.|...+..+  .+|||+|||+|.++..|++.   +.   ++++.|-+ .+|..+.++      ++  .++..
T Consensus        48 ~il~~~~~~ia~~~~~~--~~iLELGcGtG~~t~~Ll~~l~~~~---~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~g  122 (301)
T TIGR03438        48 AILERHADEIAAATGAG--CELVELGSGSSRKTRLLLDALRQPA---RYVPIDISADALKESAAALAADYPQLEVHGICA  122 (301)
T ss_pred             HHHHHHHHHHHHhhCCC--CeEEecCCCcchhHHHHHHhhccCC---eEEEEECCHHHHHHHHHHHHhhCCCceEEEEEE
Confidence            33444555555455544  47999999999999888765   44   78999987 888888765      22  24455


Q ss_pred             cccccCCCCCCcc-----ccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          275 DWCEPFSTYPRTY-----DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       275 ~w~~~f~typrty-----DliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      |-++.++ ++..+     .++.++..|..+.       .-....+|-++-+.|+|||.++|.
T Consensus       123 D~~~~~~-~~~~~~~~~~~~~~~gs~~~~~~-------~~e~~~~L~~i~~~L~pgG~~lig  176 (301)
T TIGR03438       123 DFTQPLA-LPPEPAAGRRLGFFPGSTIGNFT-------PEEAVAFLRRIRQLLGPGGGLLIG  176 (301)
T ss_pred             cccchhh-hhcccccCCeEEEEecccccCCC-------HHHHHHHHHHHHHhcCCCCEEEEe
Confidence            6555432 22222     2344444444432       222357899999999999999985

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.52  E-value=6.2e-05  Score=70.25  Aligned_cols=95  Identities=14%  Similarity=0.180  Sum_probs=63.9

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cccc--ccccccccCCCCCCccccccccCcccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG--VYHDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig--~~~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      ..|||+|||.|.++..+.....   +++-.|.. ..+..+-++    |+..  ...+..+-....+.+||+|.++.++..
T Consensus        50 ~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~  126 (233)
T PRK05134         50 KRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH  126 (233)
T ss_pred             CeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence            3599999999999988877653   55666654 555554443    3311  112222211123368999999888775


Q ss_pred             ccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ..         +...+|-++.|+|+|||.+++..
T Consensus       127 ~~---------~~~~~l~~~~~~L~~gG~l~v~~  151 (233)
T PRK05134        127 VP---------DPASFVRACAKLVKPGGLVFFST  151 (233)
T ss_pred             cC---------CHHHHHHHHHHHcCCCcEEEEEe
Confidence            43         23578899999999999999975

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.51  E-value=4.5e-05  Score=70.17  Aligned_cols=143  Identities=14%  Similarity=0.202  Sum_probs=82.6

Q ss_pred             ccCcccccc--chHHHHHHHHHHH-HHhhhhcCCCCeeEEEecCCcceeeeeeccC---CCeeEEEeccCCCC-cchHHH
Q 017068          192 KNGYDVFEA--DSRRWRRRVAYYK-NTLNVKLGTPAIRNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVI  264 (378)
Q Consensus       192 g~~~~~F~~--d~~~w~~~v~~Y~-~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~---~~vwvmnv~p~~~~-~~l~~i  264 (378)
                      |+....|..  +...++..+..-. ..+.  +..+  -.|+|+|||+|.|+..+..   ..-   +|...|.+ ..++.+
T Consensus         9 ~~~d~~~~~~~~~~~t~~~~r~~~l~~l~--~~~~--~~vlDlG~GtG~~s~~~a~~~~~~~---~v~avD~~~~~~~~a   81 (198)
T PRK00377          9 GIPDEEFERDEEIPMTKEEIRALALSKLR--LRKG--DMILDIGCGTGSVTVEASLLVGETG---KVYAVDKDEKAINLT   81 (198)
T ss_pred             CCChHHHccCCCCCCCHHHHHHHHHHHcC--CCCc--CEEEEeCCcCCHHHHHHHHHhCCCC---EEEEEECCHHHHHHH
Confidence            444455654  3456777664321 1111  2333  3799999999999876532   222   44555654 555543


Q ss_pred             Hhh----ccc---c-ccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC-CHH
Q 017068          265 YDR----GLI---G-VYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPE  335 (378)
Q Consensus       265 ~eR----Gli---g-~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-~~~  335 (378)
                      -++    |+.   - +..|..+.++..+..||.|.+...            ...+..++-++-|+|+|||.+++.- +.+
T Consensus        82 ~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~------------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  149 (198)
T PRK00377         82 RRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG------------SEKLKEIISASWEIIKKGGRIVIDAILLE  149 (198)
T ss_pred             HHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC------------cccHHHHHHHHHHHcCCCcEEEEEeecHH
Confidence            322    321   1 112333323333457898876421            1234678889999999999999843 456


Q ss_pred             HHHHHHHHHhcCCceEEE
Q 017068          336 VIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       336 ~~~~~~~~~~~l~W~~~~  353 (378)
                      .+.++...++.+.++..+
T Consensus       150 ~~~~~~~~l~~~g~~~~~  167 (198)
T PRK00377        150 TVNNALSALENIGFNLEI  167 (198)
T ss_pred             HHHHHHHHHHHcCCCeEE
Confidence            677777777766665543

>PRK06922 hypothetical protein; Provisional

Probab=97.50  E-value=3.6e-05  Score=83.09  Aligned_cols=105  Identities=18%  Similarity=0.224  Sum_probs=65.8

Q ss_pred             eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhhc----c-cccc-ccccccCCC-C-CCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRG----L-IGVY-HDWCEPFST-Y-PRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eRG----l-ig~~-~~w~~~f~t-y-prtyDliH~~~~  295 (378)
                      .+|||+|||+|.++.+|... +  -.+|+-.|-+ .+++.+-+|.    . +-+. .| +..+|. + |.+||+|.++.+
T Consensus       420 ~rVLDIGCGTG~ls~~LA~~~P--~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gD-a~dLp~~fedeSFDvVVsn~v  496 (677)
T PRK06922        420 DTIVDVGAGGGVMLDMIEEETE--DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGD-AINLSSSFEKESVDTIVYSSI  496 (677)
T ss_pred             CEEEEeCCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcc-hHhCccccCCCCEEEEEEchH
Confidence            47999999999998777542 1  1266777766 6777665542    1 1111 12 222331 2 489999999876


Q ss_pred             cccccC--C--CCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          296 ESLIKN--P--GSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       296 ~~~~~~--~--~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      +..+-+  +  +..-..-.+..+|-|+-|+|+|||.+++.|.
T Consensus       497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            653310  0  0000112456889999999999999999873

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=97.50  E-value=1.8e-05  Score=69.38  Aligned_cols=96  Identities=17%  Similarity=0.306  Sum_probs=66.0

Q ss_pred             eEEEecCCcceeeeeeccC---CCeeEEEeccCCCC-cchHHHHh----hccc--c-ccccccccCCC-CCCcccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYD----RGLI--G-VYHDWCEPFST-YPRTYDLIHVS  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~---~~vwvmnv~p~~~~-~~l~~i~e----RGli--g-~~~~w~~~f~t-yprtyDliH~~  293 (378)
                      -+|||+|||+|.++-.|.+   .+.   .++-.|-+ .+++.+-+    .|+-  - ...|..+ ++. |+..||+|.+.
T Consensus         5 ~~iLDlGcG~G~~~~~l~~~~~~~~---~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~   80 (152)
T PF13847_consen    5 KKILDLGCGTGRLLIQLAKELNPGA---KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN   80 (152)
T ss_dssp             SEEEEET-TTSHHHHHHHHHSTTTS---EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred             CEEEEecCcCcHHHHHHHHhcCCCC---EEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence            4799999999999988873   234   34555655 66766655    3552  1 2234444 332 45899999999


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP  334 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~  334 (378)
                      ..+...         .+...+|-+|=|.|+|||.+++.+..
T Consensus        81 ~~l~~~---------~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   81 GVLHHF---------PDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             STGGGT---------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             Cchhhc---------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            888433         23457888999999999999999754

...

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=97.48  E-value=8.1e-05  Score=72.29  Aligned_cols=73  Identities=25%  Similarity=0.280  Sum_probs=56.2

Q ss_pred             ecCCCCChHHHHHHHHHcCC--C---------eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068           10 SFAPRDSHKAQIQFALERGI--P---------AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG   78 (378)
Q Consensus        10 s~ap~D~se~~vq~A~erg~--~---------~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG   78 (378)
                      ++...|.++.||+.|++...  |         ..+...+++.+-   +.||+|+|+.+++|..++. ..+.-+-+.||||
T Consensus       113 ~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsevleHV~dp~-~~l~~l~~~lkP~  188 (282)
T KOG1270|consen  113 QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEVLEHVKDPQ-EFLNCLSALLKPN  188 (282)
T ss_pred             eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHHHHHHHhCHH-HHHHHHHHHhCCC
Confidence            45667788999999998621  1         112333444432   3399999999999998888 9999999999999


Q ss_pred             cEEEEEcC
Q 017068           79 GYLVISGP   86 (378)
Q Consensus        79 G~lvis~p   86 (378)
                      |.+++++.
T Consensus       189 G~lfitti  196 (282)
T KOG1270|consen  189 GRLFITTI  196 (282)
T ss_pred             CceEeeeh
Confidence            99999875

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.48  E-value=7.2e-05  Score=61.87  Aligned_cols=92  Identities=22%  Similarity=0.278  Sum_probs=56.0

Q ss_pred             eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHH----Hhhcccc--c-cccccccCCCCCCccccccccCcc
Q 017068          226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVI----YDRGLIG--V-YHDWCEPFSTYPRTYDLIHVSGIE  296 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i----~eRGlig--~-~~~w~~~f~typrtyDliH~~~~~  296 (378)
                      ..|||+|||.|.++..+... +-  .+|...|.+ ..+..+    .+.|+-.  + ..+....++.-+.+||.|-+....
T Consensus        21 ~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~   98 (124)
T TIGR02469        21 DVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG   98 (124)
T ss_pred             CEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc
Confidence            48999999999999988754 21  245555544 444432    2223311  1 112111112223689998775433


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      ..            +..++-++-|.|+|||++++.
T Consensus        99 ~~------------~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        99 GL------------LQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             hh------------HHHHHHHHHHHcCCCCEEEEE
Confidence            21            247889999999999999985

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.47  E-value=1.9e-05  Score=71.39  Aligned_cols=52  Identities=31%  Similarity=0.403  Sum_probs=46.2

Q ss_pred             ccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcCCC
Q 017068           37 GTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGPPV   88 (378)
Q Consensus        37 dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~pp~   88 (378)
                      .....+|.|+|.|+|.|.+++.|+.-.+ ..+++|.+|+|||||++-++.|..
T Consensus        37 As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl   89 (185)
T COG4627          37 ASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL   89 (185)
T ss_pred             hhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence            3567899999999999999999998766 479999999999999999998843

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=97.47  E-value=0.00024  Score=73.36  Aligned_cols=142  Identities=12%  Similarity=0.101  Sum_probs=84.8

Q ss_pred             EEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh----cc-cc-ccccccccCCCCCCccccccccCcccc
Q 017068          227 NIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GL-IG-VYHDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig-~~~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      +|||+|||+|.++.+|... +-  .+|...|.+ ..++.+-++    |+ +- +..|+.+...+-...||+|-|+--+..
T Consensus       254 rVLDLGcGSG~IaiaLA~~~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~  331 (423)
T PRK14966        254 RVWDLGTGSGAVAVTVALERPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE  331 (423)
T ss_pred             EEEEEeChhhHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence            7999999999999887642 21  245666765 667655443    32 21 234555431111247999999754321


Q ss_pred             ccCCCC--C-----------CCCCC---ccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEecCCCCCCC
Q 017068          299 IKNPGS--N-----------KNSCS---LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNG  362 (378)
Q Consensus       299 ~~~~~~--~-----------~~~c~---~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~~~~~~~~~  362 (378)
                      -.....  +           +..-.   +..++-+.-+.|+|||++++--..+.-+.+++++++..|+......+  -.+
T Consensus       332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kD--l~G  409 (423)
T PRK14966        332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPD--LAG  409 (423)
T ss_pred             cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEc--CCC
Confidence            100000  0           00001   22555566788999999988655566778888888877865432222  136


Q ss_pred             CeEEEEEEec
Q 017068          363 REKILVATKS  372 (378)
Q Consensus       363 ~e~~l~~~K~  372 (378)
                      .++++++++.
T Consensus       410 ~dR~v~~~~~  419 (423)
T PRK14966        410 LDRVTLGKYM  419 (423)
T ss_pred             CcEEEEEEEh
Confidence            7999998753

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.46  E-value=0.00016  Score=66.18  Aligned_cols=66  Identities=27%  Similarity=0.286  Sum_probs=50.9

Q ss_pred             CChHHHHHHHHHcCCCeEEEEcccCC-C-CCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALERGIPAFVAMLGTRR-L-PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~erg~~~~~~v~dae~-L-Pfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.++++++.|+++++.  +..++++. + ++++++||+|+|+.+++|..++. .+++|+.|+++   ..+++.|
T Consensus        43 D~s~~~i~~a~~~~~~--~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~-~~l~e~~r~~~---~~ii~~p  110 (194)
T TIGR02081        43 EIDQDGVLACVARGVN--VIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPE-EILDEMLRVGR---HAIVSFP  110 (194)
T ss_pred             eCCHHHHHHHHHcCCe--EEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHH-HHHHHHHHhCC---eEEEEcC
Confidence            5667899999887754  45566654 5 58899999999999998887776 89999998865   4455554

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=97.46  E-value=7.7e-05  Score=68.82  Aligned_cols=94  Identities=21%  Similarity=0.235  Sum_probs=59.4

Q ss_pred             eEEEecCCcceeeeeeccCCC---eeEEEeccCCCC-cchHHHHhhc----c---cccc-ccccccCCCCCCcccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDP---VWVMNVVPARKS-STLSVIYDRG----L---IGVY-HDWCEPFSTYPRTYDLIHVS  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~---vwvmnv~p~~~~-~~l~~i~eRG----l---ig~~-~~w~~~f~typrtyDliH~~  293 (378)
                      ..|||+|||.|.++..+...-   .   .++-.|.+ ..+..+-++-    +   +-+. .|..+ ++.-+.+||+|.++
T Consensus        53 ~~vldiG~G~G~~~~~l~~~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~I~~~  128 (239)
T PRK00216         53 DKVLDLACGTGDLAIALAKAVGKTG---EVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA-LPFPDNSFDAVTIA  128 (239)
T ss_pred             CeEEEeCCCCCHHHHHHHHHcCCCC---eEEEEeCCHHHHHHHHHhhcccccccCeEEEeccccc-CCCCCCCccEEEEe
Confidence            479999999999987775432   2   34445544 4554443331    1   1111 22222 22223689999998


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .++..+         .+...+|-++-++|+|||.+++.+
T Consensus       129 ~~l~~~---------~~~~~~l~~~~~~L~~gG~li~~~  158 (239)
T PRK00216        129 FGLRNV---------PDIDKALREMYRVLKPGGRLVILE  158 (239)
T ss_pred             cccccC---------CCHHHHHHHHHHhccCCcEEEEEE
Confidence            766533         345678899999999999998864

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.44  E-value=4.8e-05  Score=69.92  Aligned_cols=124  Identities=11%  Similarity=0.169  Sum_probs=71.9

Q ss_pred             eeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHH----hhcccc---ccccccccC-CCCC-Cccccccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIY----DRGLIG---VYHDWCEPF-STYP-RTYDLIHV  292 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~----eRGlig---~~~~w~~~f-~typ-rtyDliH~  292 (378)
                      =+.+||+|||.|.|+.+|..+  ..   ||+-.|.. ..+..+.    +.|+-.   +..|..+.. ..+| .++|.|+.
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~p~~---~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~   93 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQNPDK---NFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL   93 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhCCCC---CEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence            358999999999999888754  23   55556654 5554443    334311   111221111 1234 48999887


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe-CCHHHHHHHHHH-HhcCCceEE
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRI-ANTVRWTAA  352 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-d~~~~~~~~~~~-~~~l~W~~~  352 (378)
                      ... ..|........|.....+|-|+-|+|+|||.+++. |.......+.+. .+.-+|+..
T Consensus        94 ~~p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~  154 (194)
T TIGR00091        94 NFP-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENT  154 (194)
T ss_pred             ECC-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEec
Confidence            532 12321112224455567899999999999999886 555556655444 443345543

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.42  E-value=4.2e-05  Score=69.97  Aligned_cols=91  Identities=16%  Similarity=0.214  Sum_probs=58.0

Q ss_pred             EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccccccccccccCCCCC-CccccccccCccccccCCCC
Q 017068          227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYP-RTYDLIHVSGIESLIKNPGS  304 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f~typ-rtyDliH~~~~~~~~~~~~~  304 (378)
                      +|||+|||.|.++.+|.+..-.  ++.-.|.+ ..+..+.++|+--+..|..+.+++++ ++||+|-|..+|....    
T Consensus        16 ~iLDiGcG~G~~~~~l~~~~~~--~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~----   89 (194)
T TIGR02081        16 RVLDLGCGDGELLALLRDEKQV--RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR----   89 (194)
T ss_pred             EEEEeCCCCCHHHHHHHhccCC--cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc----
Confidence            7999999999999888654211  23444544 66777777776333344443333344 7999999998887553    


Q ss_pred             CCCCCCccceeeeecccccCCCeEEEe
Q 017068          305 NKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       305 ~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                           +...+|-||-|++   |..|+.
T Consensus        90 -----d~~~~l~e~~r~~---~~~ii~  108 (194)
T TIGR02081        90 -----NPEEILDEMLRVG---RHAIVS  108 (194)
T ss_pred             -----CHHHHHHHHHHhC---CeEEEE
Confidence                 2345666665554   445544

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.41  E-value=0.00018  Score=70.85  Aligned_cols=78  Identities=18%  Similarity=0.215  Sum_probs=58.0

Q ss_pred             EecCCCCChHHHHHHHHHc--------CC----------------------------CeEEEEcccCCCCCC-CCceeEE
Q 017068            9 LSFAPRDSHKAQIQFALER--------GI----------------------------PAFVAMLGTRRLPFP-AFSFDIV   51 (378)
Q Consensus         9 ms~ap~D~se~~vq~A~er--------g~----------------------------~~~~~v~dae~LPfp-d~SFD~V   51 (378)
                      +.|-..|+|+..++.|++-        ++                            .+.|...+....|++ .+.||+|
T Consensus       148 ~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I  227 (287)
T PRK10611        148 WKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAI  227 (287)
T ss_pred             cEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCccee
Confidence            3455667778999998773        11                            123555565554554 6889999


Q ss_pred             EecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           52 HCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        52 ~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +|.++++|+.... .++++.+.+.|+|||+|++...
T Consensus       228 ~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s  263 (287)
T PRK10611        228 FCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS  263 (287)
T ss_pred             eHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence            9999999997643 5899999999999999988654

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=97.41  E-value=8.7e-05  Score=69.22  Aligned_cols=94  Identities=18%  Similarity=0.197  Sum_probs=65.9

Q ss_pred             eeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhhcc-ccc-cccccccCCCCCCccccccccCccccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDRGL-IGV-YHDWCEPFSTYPRTYDLIHVSGIESLI  299 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eRGl-ig~-~~~w~~~f~typrtyDliH~~~~~~~~  299 (378)
                      -..|||+|||+|.++..|...  ..   ++...|.+ .+++.+-++.- +.+ ..+-.++|+  +++||+|-|..++.++
T Consensus        44 ~~~VLDiGCG~G~~~~~L~~~~~~~---~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~--~~sfD~V~~~~vL~hl  118 (204)
T TIGR03587        44 IASILELGANIGMNLAALKRLLPFK---HIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFK--DNFFDLVLTKGVLIHI  118 (204)
T ss_pred             CCcEEEEecCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCC--CCCEEEEEECChhhhC
Confidence            457999999999999998765  33   56777765 78887766421 112 223333332  4899999999999866


Q ss_pred             cCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          300 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       300 ~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .       .-.+..++-||.|++  +++++|.+
T Consensus       119 ~-------p~~~~~~l~el~r~~--~~~v~i~e  142 (204)
T TIGR03587       119 N-------PDNLPTAYRELYRCS--NRYILIAE  142 (204)
T ss_pred             C-------HHHHHHHHHHHHhhc--CcEEEEEE
Confidence            3       124567899999998  57888864

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.37  E-value=8.4e-05  Score=71.21  Aligned_cols=72  Identities=21%  Similarity=0.194  Sum_probs=61.7

Q ss_pred             CCCChHHHHHHHHHc---CCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEc
Q 017068           13 PRDSHKAQIQFALER---GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        13 p~D~se~~vq~A~er---g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      ..|.|..|++.++..   ++.....++|-|.|||.++|||+|+++..+ ||.++-...+..+.-.|||.|.|+-+.
T Consensus       100 ~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-HW~NdLPg~m~~ck~~lKPDg~Fiasm  174 (325)
T KOG2940|consen  100 MMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-HWTNDLPGSMIQCKLALKPDGLFIASM  174 (325)
T ss_pred             eeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-hhhccCchHHHHHHHhcCCCccchhHH
Confidence            357888999998775   455567889999999999999999998875 898877699999999999999998764

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=97.36  E-value=0.00031  Score=70.14  Aligned_cols=74  Identities=26%  Similarity=0.283  Sum_probs=57.1

Q ss_pred             CCChHHHHHHHHHcC-----------CCeEEEEccc------CCCCCCCCceeEEEecCccccccCCh---HHHHHHHhh
Q 017068           14 RDSHKAQIQFALERG-----------IPAFVAMLGT------RRLPFPAFSFDIVHCSRCLIPFTAYN---ATYLIEVDR   73 (378)
Q Consensus        14 ~D~se~~vq~A~erg-----------~~~~~~v~da------e~LPfpd~SFD~V~cs~~l~hw~~~~---~~~L~Ev~R   73 (378)
                      .|+++..|+.|++|.           .++.|..+|.      ..++++|.+||+|-|-+|+|+--...   ..+|+.+.+
T Consensus       146 iDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~  225 (389)
T KOG1975|consen  146 IDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAK  225 (389)
T ss_pred             eehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHh
Confidence            455578888888872           2456777762      46788888899999999987643322   479999999


Q ss_pred             cccCCcEEEEEcCC
Q 017068           74 LLRPGGYLVISGPP   87 (378)
Q Consensus        74 VLkPGG~lvis~pp   87 (378)
                      .|||||+|+-+.|.
T Consensus       226 ~LkpGG~FIgTiPd  239 (389)
T KOG1975|consen  226 CLKPGGVFIGTIPD  239 (389)
T ss_pred             hcCCCcEEEEecCc
Confidence            99999999999883

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.35  E-value=0.00031  Score=65.52  Aligned_cols=78  Identities=23%  Similarity=0.346  Sum_probs=51.5

Q ss_pred             EecCCCCChHHHHHHHHHc--------CC-------------------------CeEEEEcccCCCCCCCCceeEEEecC
Q 017068            9 LSFAPRDSHKAQIQFALER--------GI-------------------------PAFVAMLGTRRLPFPAFSFDIVHCSR   55 (378)
Q Consensus         9 ms~ap~D~se~~vq~A~er--------g~-------------------------~~~~~v~dae~LPfpd~SFD~V~cs~   55 (378)
                      +.|-.+|+|...++.|++-        ++                         .+.|...+....+-+.+.||+|+|..
T Consensus        65 ~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRN  144 (196)
T PF01739_consen   65 FRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRN  144 (196)
T ss_dssp             EEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-S
T ss_pred             eEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecC
Confidence            5666778888999999772        22                         23455666555455678999999999


Q ss_pred             ccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           56 CLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        56 ~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +++++.+.. .++++.+++.|+|||+|++...
T Consensus       145 VlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s  176 (196)
T PF01739_consen  145 VLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS  176 (196)
T ss_dssp             SGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred             EEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence            999997754 5899999999999999999754

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.35  E-value=0.00039  Score=65.70  Aligned_cols=139  Identities=15%  Similarity=0.233  Sum_probs=78.2

Q ss_pred             cccccchHHHHHHHHHHHHHhh-----h------hcC-CCCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCCcchH
Q 017068          196 DVFEADSRRWRRRVAYYKNTLN-----V------KLG-TPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLS  262 (378)
Q Consensus       196 ~~F~~d~~~w~~~v~~Y~~~~~-----~------~~~-~~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~~~l~  262 (378)
                      +.|.+|-+.|..-=..|.+++.     |      .|. ...--.|-|||||-|..|+++.+. .|.-.-+++.+..    
T Consensus        32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~----  107 (219)
T PF05148_consen   32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPR----  107 (219)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S---EEEEESS-SSTT----
T ss_pred             HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccCceEEEeeccCCCCC----
Confidence            5588888777766555665542     1      122 233458999999999999887532 4655555554432    


Q ss_pred             HHHhhccccccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHH---HHH
Q 017068          263 VIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEV---IDK  339 (378)
Q Consensus       263 ~i~eRGlig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~---~~~  339 (378)
                            .+.  -|- ...|.-+.+.|.+.+  |+|.-        .-+..++|.|..|||||||.++|-+-..-   ++.
T Consensus       108 ------Vta--cdi-a~vPL~~~svDv~Vf--cLSLM--------GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~  168 (219)
T PF05148_consen  108 ------VTA--CDI-ANVPLEDESVDVAVF--CLSLM--------GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQ  168 (219)
T ss_dssp             ------EEE--S-T-TS-S--TT-EEEEEE--ES-----------SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHH
T ss_pred             ------EEE--ecC-ccCcCCCCceeEEEE--Ehhhh--------CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHH
Confidence                  111  011 123334489998876  44432        23557999999999999999999886543   344


Q ss_pred             HHHHHhcCCceEEEecCC
Q 017068          340 VSRIANTVRWTAAVHDKE  357 (378)
Q Consensus       340 ~~~~~~~l~W~~~~~~~~  357 (378)
                      ..+..+++-.++...|..
T Consensus       169 F~~~~~~~GF~~~~~d~~  186 (219)
T PF05148_consen  169 FIKALKKLGFKLKSKDES  186 (219)
T ss_dssp             HHHHHHCTTEEEEEEE--
T ss_pred             HHHHHHHCCCeEEecccC
Confidence            445578888888876643

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=97.34  E-value=0.00035  Score=65.14  Aligned_cols=79  Identities=16%  Similarity=0.304  Sum_probs=57.3

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEE
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLV   82 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lv   82 (378)
                      .+|+|+|+++.-+.. ..+.|.++++++...+.|.....++ +.||+|++..+++|...+. ...++.|..-++|||+++
T Consensus        53 ~~VtAvD~s~~al~~-l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~l  130 (192)
T PF03848_consen   53 FDVTAVDISPVALEK-LQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNL  130 (192)
T ss_dssp             -EEEEEESSHHHHHH-HHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEE
T ss_pred             CeEEEEECCHHHHHH-HHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEE
Confidence            467888887643333 2455667789988888898887876 6899999988887776653 478899999999999988


Q ss_pred             EE
Q 017068           83 IS   84 (378)
Q Consensus        83 is   84 (378)
                      +.
T Consensus       131 i~  132 (192)
T PF03848_consen  131 IV  132 (192)
T ss_dssp             EE
T ss_pred             EE
Confidence            73

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.33  E-value=0.00013  Score=77.05  Aligned_cols=139  Identities=15%  Similarity=0.263  Sum_probs=83.5

Q ss_pred             eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh----ccc---c-ccccccccCCCCCCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GLI---G-VYHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gli---g-~~~~w~~~f~typrtyDliH~~~~  295 (378)
                      ..|||+|||+|.++.+|+.. +-  ..|+..|.+ ..+.++-++    |+-   - +..|+.+.++  ++.||+|.|+--
T Consensus       140 ~~VLDlG~GsG~iai~la~~~p~--~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--~~~fDlIvsNPP  215 (506)
T PRK01544        140 LNILELGTGSGCIAISLLCELPN--ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--KQKFDFIVSNPP  215 (506)
T ss_pred             CEEEEccCchhHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--CCCccEEEECCC
Confidence            57999999999999877642 21  145666755 666655544    442   1 2345544332  368999998643


Q ss_pred             cccccCC-----CC---C------CCCCC---ccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEecCCC
Q 017068          296 ESLIKNP-----GS---N------KNSCS---LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEP  358 (378)
Q Consensus       296 ~~~~~~~-----~~---~------~~~c~---~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~~~~~  358 (378)
                      +......     +.   +      ...-.   +..++-++.++|+|||.+++.-....-+++.+++.+..|+....-.+ 
T Consensus       216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~~D-  294 (506)
T PRK01544        216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESVYKD-  294 (506)
T ss_pred             CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEEEec-
Confidence            3321100     00   0      00011   22466788999999999999755556667888777777765432222 


Q ss_pred             CCCCCeEEEEEE
Q 017068          359 GSNGREKILVAT  370 (378)
Q Consensus       359 ~~~~~e~~l~~~  370 (378)
                       -.+.++++++.
T Consensus       295 -~~g~~R~v~~~  305 (506)
T PRK01544        295 -LQGHSRVILIS  305 (506)
T ss_pred             -CCCCceEEEec
Confidence             13568888765

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.32  E-value=0.00067  Score=66.26  Aligned_cols=67  Identities=30%  Similarity=0.473  Sum_probs=49.5

Q ss_pred             ChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEc
Q 017068           16 SHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        16 ~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      +|+.|++.|+++    |+.  +.+...|...++.   .||.|++..++.|..... ..+++++.|+|||||.+++..
T Consensus        93 lS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen   93 LSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             S-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             CCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence            468999988764    554  5667777766654   999999999999996532 489999999999999999753

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.31  E-value=0.00052  Score=70.31  Aligned_cols=82  Identities=16%  Similarity=0.267  Sum_probs=56.3

Q ss_pred             CCCeEEEecCCCCChHHHHHHHHHcCCC-eEEEEcccCCC--CCCCCceeEEEecCccccccCCh------HHHHHHHhh
Q 017068            3 SENILTLSFAPRDSHKAQIQFALERGIP-AFVAMLGTRRL--PFPAFSFDIVHCSRCLIPFTAYN------ATYLIEVDR   73 (378)
Q Consensus         3 ~~~v~~ms~ap~D~se~~vq~A~erg~~-~~~~v~dae~L--Pfpd~SFD~V~cs~~l~hw~~~~------~~~L~Ev~R   73 (378)
                      +.+++++++.+..+..+ .+.|.++++. +.+..+|+..+  ++++++||.|++.+. .+|+...      ...+.|+.|
T Consensus       146 ~~~~iGIEI~~~~i~~a-~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP-dPW~KkrHRRlv~~~fL~e~~R  223 (390)
T PRK14121        146 NKLFIGIEIHTPSIEQV-LKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP-VPWDKKPHRRVISEDFLNEALR  223 (390)
T ss_pred             CCCEEEEECCHHHHHHH-HHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC-CCccccchhhccHHHHHHHHHH
Confidence            35778888775333322 2333444553 56677888655  689999999997653 3554322      278999999


Q ss_pred             cccCCcEEEEEcC
Q 017068           74 LLRPGGYLVISGP   86 (378)
Q Consensus        74 VLkPGG~lvis~p   86 (378)
                      +|+|||.+.+.+-
T Consensus       224 vLkpGG~l~l~TD  236 (390)
T PRK14121        224 VLKPGGTLELRTD  236 (390)
T ss_pred             HcCCCcEEEEEEE
Confidence            9999999998763

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.31  E-value=0.0006  Score=56.33  Aligned_cols=68  Identities=18%  Similarity=0.156  Sum_probs=47.5

Q ss_pred             CCChHHHHHHHHHc----CC-CeEEEEcccCC-CCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEc
Q 017068           14 RDSHKAQIQFALER----GI-PAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~-~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      .|.++.+++.|+++    +. .+.+...++.. +++..++||.|++..+..+   . ..+++++.|+|||||+|+++.
T Consensus        49 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~-~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        49 IERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGGL---L-QEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             EcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcchh---H-HHHHHHHHHHcCCCCEEEEEe
Confidence            34456777777653    33 35566666554 4455579999998765432   2 388999999999999999875

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=97.31  E-value=0.00013  Score=67.77  Aligned_cols=95  Identities=8%  Similarity=0.072  Sum_probs=66.8

Q ss_pred             CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccc-------c-ccccccccCCCCCCccccccccC
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLI-------G-VYHDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGli-------g-~~~~w~~~f~typrtyDliH~~~  294 (378)
                      .-..|||+|||.|.|+..|.+++.   .|.-.|.+ .++..+.+|.-.       . ...|..    ..+.+||+|-+..
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~~~~fD~ii~~~  127 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL----SLCGEFDIVVCMD  127 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh----hCCCCcCEEEEhh
Confidence            356899999999999999987765   56677765 777777666421       1 122222    2248899998877


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ++..+.       ...+..++-++.|+++|++++.+..
T Consensus       128 ~l~~~~-------~~~~~~~l~~i~~~~~~~~~i~~~~  158 (219)
T TIGR02021       128 VLIHYP-------ASDMAKALGHLASLTKERVIFTFAP  158 (219)
T ss_pred             HHHhCC-------HHHHHHHHHHHHHHhCCCEEEEECC
Confidence            776542       2345678899999999888877754

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=97.30  E-value=0.00076  Score=60.79  Aligned_cols=70  Identities=17%  Similarity=0.196  Sum_probs=50.2

Q ss_pred             CChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccCC--------------------hHHHHHH
Q 017068           15 DSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY--------------------NATYLIE   70 (378)
Q Consensus        15 D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~--------------------~~~~L~E   70 (378)
                      |.++.+++.|+++    +..+.+..+|....+  .++||+|+++..+++..+.                    -...+++
T Consensus        48 D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  125 (179)
T TIGR00537        48 DINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDE  125 (179)
T ss_pred             ECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHh
Confidence            4446788777764    445566667765543  4599999998777655432                    1257999


Q ss_pred             HhhcccCCcEEEEEcC
Q 017068           71 VDRLLRPGGYLVISGP   86 (378)
Q Consensus        71 v~RVLkPGG~lvis~p   86 (378)
                      +.|+|||||.+++..+
T Consensus       126 ~~~~Lk~gG~~~~~~~  141 (179)
T TIGR00537       126 LPEILKEGGRVQLIQS  141 (179)
T ss_pred             HHHhhCCCCEEEEEEe
Confidence            9999999999998765

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=97.29  E-value=7.6e-05  Score=73.04  Aligned_cols=101  Identities=14%  Similarity=0.258  Sum_probs=64.7

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCCcchHHH----Hhhcccc----ccccccccCCCCCCccccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLSVI----YDRGLIG----VYHDWCEPFSTYPRTYDLI  290 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~~~l~~i----~eRGlig----~~~~w~~~f~typrtyDli  290 (378)
                      +.....+.|+|+|||+|.++.++..+ |-.  +++-.|.+..++.+    -+.|+-.    +-+|-.+  .++| .+|++
T Consensus       145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~--~~~~-~~D~v  219 (306)
T TIGR02716       145 AKLDGVKKMIDVGGGIGDISAAMLKHFPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYK--ESYP-EADAV  219 (306)
T ss_pred             cCCCCCCEEEEeCCchhHHHHHHHHHCCCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccC--CCCC-CCCEE
Confidence            44456789999999999999888754 321  34444545455443    3445532    2233322  1234 37998


Q ss_pred             cccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          291 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       291 H~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      -.++++..|.     ..  ....+|-++-|.|+|||.++|-|
T Consensus       220 ~~~~~lh~~~-----~~--~~~~il~~~~~~L~pgG~l~i~d  254 (306)
T TIGR02716       220 LFCRILYSAN-----EQ--LSTIMCKKAFDAMRSGGRLLILD  254 (306)
T ss_pred             EeEhhhhcCC-----hH--HHHHHHHHHHHhcCCCCEEEEEE
Confidence            8877776653     11  12468889999999999999875

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.28  E-value=0.00094  Score=61.14  Aligned_cols=71  Identities=20%  Similarity=0.272  Sum_probs=49.7

Q ss_pred             CeEEEecCCCCChHHHHHHHHH----cCCC-eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALE----RGIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~e----rg~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      .|+++++++     .|++.|++    .+++ +.+..+|++.++ ++++||+|+|.. +   .+.. ..++++.|+|||||
T Consensus        68 ~V~~iD~s~-----~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~---~~~~-~~~~~~~~~LkpgG  136 (181)
T TIGR00138        68 KLTLLESNH-----KKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L---ASLN-VLLELTLNLLKVGG  136 (181)
T ss_pred             eEEEEeCcH-----HHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h---hCHH-HHHHHHHHhcCCCC
Confidence            466666654     55555443    3553 677888888875 368999998754 3   2333 67889999999999


Q ss_pred             EEEEEcC
Q 017068           80 YLVISGP   86 (378)
Q Consensus        80 ~lvis~p   86 (378)
                      .+++...
T Consensus       137 ~lvi~~~  143 (181)
T TIGR00138       137 YFLAYKG  143 (181)
T ss_pred             EEEEEcC
Confidence            9998643

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.28  E-value=0.00052  Score=64.17  Aligned_cols=56  Identities=14%  Similarity=-0.040  Sum_probs=41.7

Q ss_pred             eEEEEcccCCCC--------CCCCceeEEEecCccccccCCh----------HHHHHHHhhcccCCcEEEEEcC
Q 017068           31 AFVAMLGTRRLP--------FPAFSFDIVHCSRCLIPFTAYN----------ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        31 ~~~~v~dae~LP--------fpd~SFD~V~cs~~l~hw~~~~----------~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +.+..+|+...+        +++++||+|+|..+.....++.          ..+|+++.|+|||||.|++...
T Consensus        93 v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~  166 (209)
T PRK11188         93 VDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF  166 (209)
T ss_pred             cEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            567778877753        7889999999976543322210          2589999999999999999653

>TIGR00536 hemK_fam HemK family putative methylases

Probab=97.28  E-value=0.00037  Score=67.91  Aligned_cols=141  Identities=18%  Similarity=0.266  Sum_probs=84.2

Q ss_pred             eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh----cc---c-cccccccccCCCCCCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GL---I-GVYHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl---i-g~~~~w~~~f~typrtyDliH~~~~  295 (378)
                      ..|+|+|||+|.++.+|... +-  .+|...|.+ ..+.++-+.    |+   + =+..|+.++++.  ..||+|-++--
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~--~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPP  191 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPN--AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNPP  191 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECCC
Confidence            47999999999999888753 21  155667765 666555543    33   1 123567665432  37999988632


Q ss_pred             cccccC----CCC---CCCC---------CCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHh-cCCceEEEecCCC
Q 017068          296 ESLIKN----PGS---NKNS---------CSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIAN-TVRWTAAVHDKEP  358 (378)
Q Consensus       296 ~~~~~~----~~~---~~~~---------c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~-~l~W~~~~~~~~~  358 (378)
                      +..-.+    ++.   +...         -.+..++-+.-+.|+|||++++.-....-..+.++.. ...|.....-.+ 
T Consensus       192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D-  270 (284)
T TIGR00536       192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRD-  270 (284)
T ss_pred             CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecC-
Confidence            211100    000   0000         0133577788899999999999766555667777655 456753322122 


Q ss_pred             CCCCCeEEEEEEec
Q 017068          359 GSNGREKILVATKS  372 (378)
Q Consensus       359 ~~~~~e~~l~~~K~  372 (378)
                       -.+.++++++++.
T Consensus       271 -~~g~~R~~~~~~~  283 (284)
T TIGR00536       271 -LNGKERVVLGFYH  283 (284)
T ss_pred             -CCCCceEEEEEec
Confidence             2467899998753

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=97.28  E-value=0.00014  Score=71.34  Aligned_cols=75  Identities=24%  Similarity=0.229  Sum_probs=63.0

Q ss_pred             ecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh--HHHHHHHhhcccCCcEEEEEc
Q 017068           10 SFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN--ATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        10 s~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~--~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      .+.+.|.+...+.-|++.|.. ...++|+.++|+++.+||.+++..+++||....  ..+++|+.|+|||||...+..
T Consensus        67 ~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv  143 (293)
T KOG1331|consen   67 LIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYV  143 (293)
T ss_pred             eeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence            466778888988888887754 466789999999999999999999999997643  589999999999999876543

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=97.26  E-value=0.0036  Score=62.07  Aligned_cols=127  Identities=18%  Similarity=0.241  Sum_probs=74.7

Q ss_pred             EEEecCCcceeeeeeccCCC---eeEEEeccCCCC-cchH----HHHhhcccc--c-cccccccCCCCCCccccccccCc
Q 017068          227 NIMDMNAFFGGFAAALTSDP---VWVMNVVPARKS-STLS----VIYDRGLIG--V-YHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~~---vwvmnv~p~~~~-~~l~----~i~eRGlig--~-~~~w~~~f~typrtyDliH~~~~  295 (378)
                      +|+|+|||+|=.|+.|.++.   -++|    +|.. .-|+    -+.+.++-+  + ..|-.++   =...||+|-|.--
T Consensus       161 ~vlDlGCG~Gvlg~~la~~~p~~~vtm----vDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~---v~~kfd~IisNPP  233 (300)
T COG2813         161 KVLDLGCGYGVLGLVLAKKSPQAKLTL----VDVNARAVESARKNLAANGVENTEVWASNLYEP---VEGKFDLIISNPP  233 (300)
T ss_pred             cEEEeCCCccHHHHHHHHhCCCCeEEE----EecCHHHHHHHHHhHHHcCCCccEEEEeccccc---ccccccEEEeCCC
Confidence            99999999999999998554   3444    3332 1121    122334444  2 2233432   2348999998766


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEe--CCHHHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEEEEec
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR--DSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~--d~~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~  372 (378)
                      |..-+    ....--...++-+-=+-|++||-++|-  .-..+-.+++++..    ++......    ++-+||-++|.
T Consensus       234 fh~G~----~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~----~gf~Vl~a~k~  300 (300)
T COG2813         234 FHAGK----AVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKN----GGFKVLRAKKA  300 (300)
T ss_pred             ccCCc----chhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeC----CCEEEEEEecC
Confidence            66321    000000125667778899999987665  44556677777665    45444332    46778877763

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=97.26  E-value=0.00057  Score=66.93  Aligned_cols=160  Identities=17%  Similarity=0.181  Sum_probs=98.2

Q ss_pred             cccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHH----Hhhccc--
Q 017068          198 FEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVI----YDRGLI--  270 (378)
Q Consensus       198 F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i----~eRGli--  270 (378)
                      ...||..+-..+.....      ..+.  +|+|||||+|-.|.+|....-- .+|..+|-+ .-|.++    -..|+.  
T Consensus        92 Pr~dTe~Lve~~l~~~~------~~~~--~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~  162 (280)
T COG2890          92 PRPDTELLVEAALALLL------QLDK--RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRV  162 (280)
T ss_pred             cCCchHHHHHHHHHhhh------hcCC--cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccE
Confidence            45688888887762121      1122  9999999999999999754321 467888865 555444    333542  


Q ss_pred             -cccccccccCCCCCCccccccccCccccccCCCC-C------------CCCCC---ccceeeeecccccCCCeEEEeCC
Q 017068          271 -GVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGS-N------------KNSCS---LVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       271 -g~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~-~------------~~~c~---~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                       -+..||   |+..+..||+|.|+--.-.-.++.. +            .....   +..++-+..++|+|||++++.-.
T Consensus       163 ~~~~~dl---f~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g  239 (280)
T COG2890         163 LVVQSDL---FEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG  239 (280)
T ss_pred             EEEeeec---ccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence             222344   4445569999998743321110000 0            01122   23678889999999999999987


Q ss_pred             HHHHHHHHHHHhcCCc-eEEEecCCCCCCCCeEEEEEEe
Q 017068          334 PEVIDKVSRIANTVRW-TAAVHDKEPGSNGREKILVATK  371 (378)
Q Consensus       334 ~~~~~~~~~~~~~l~W-~~~~~~~~~~~~~~e~~l~~~K  371 (378)
                      .+..+.++++.....+ ......  ..-.+.+++.++++
T Consensus       240 ~~q~~~v~~~~~~~~~~~~v~~~--~d~~g~~rv~~~~~  276 (280)
T COG2890         240 LTQGEAVKALFEDTGFFEIVETL--KDLFGRDRVVLAKL  276 (280)
T ss_pred             CCcHHHHHHHHHhcCCceEEEEE--ecCCCceEEEEEEe
Confidence            7777888888888884 222111  12246777777765

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=97.24  E-value=7.9e-05  Score=69.40  Aligned_cols=120  Identities=17%  Similarity=0.246  Sum_probs=92.5

Q ss_pred             hhhhcCCCCeeEEEecCCcceeeeeeccC-CCeeEEEeccCCCC-cchHHHHhhccccccccccccCCCCC-Cccccccc
Q 017068          216 LNVKLGTPAIRNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYP-RTYDLIHV  292 (378)
Q Consensus       216 ~~~~~~~~~iR~vlDm~ag~g~faa~L~~-~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f~typ-rtyDliH~  292 (378)
                      +...|..|  -.|||+|||.|.+-++|.+ ++|-.   .-.+-. ..+.-..+||+-=+-+|.-+-++.|| .+||.+-.
T Consensus         7 I~~~I~pg--srVLDLGCGdG~LL~~L~~~k~v~g---~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIl   81 (193)
T PF07021_consen    7 IAEWIEPG--SRVLDLGCGDGELLAYLKDEKQVDG---YGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVIL   81 (193)
T ss_pred             HHHHcCCC--CEEEecCCCchHHHHHHHHhcCCeE---EEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEeh
Confidence            44456666  5799999999999999986 67744   333433 67888999999878888888888898 89999999


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe------------------------------CCH----HHHH
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR------------------------------DSP----EVID  338 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~------------------------------d~~----~~~~  338 (378)
                      +..+....         .-+.+|-||   ||=|.-.|++                              |+.    -++.
T Consensus        82 sqtLQ~~~---------~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~  149 (193)
T PF07021_consen   82 SQTLQAVR---------RPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIK  149 (193)
T ss_pred             HhHHHhHh---------HHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHH
Confidence            98887665         135789998   5557788887                              222    2678


Q ss_pred             HHHHHHhcCCceEE
Q 017068          339 KVSRIANTVRWTAA  352 (378)
Q Consensus       339 ~~~~~~~~l~W~~~  352 (378)
                      ..+++.+.+..++.
T Consensus       150 DFe~lc~~~~i~I~  163 (193)
T PF07021_consen  150 DFEDLCRELGIRIE  163 (193)
T ss_pred             HHHHHHHHCCCEEE
Confidence            88888888888875

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=97.24  E-value=0.00034  Score=68.41  Aligned_cols=124  Identities=19%  Similarity=0.215  Sum_probs=73.8

Q ss_pred             eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCCCCCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~typrtyDliH~~~  294 (378)
                      .+|||+|||+|.++.+|..+  +.   .|+..|.+ ..+..+-++    |+   +- +..|+.+.++  +.+||+|-++-
T Consensus       123 ~~vLDlG~GsG~i~~~la~~~~~~---~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NP  197 (284)
T TIGR03533       123 KRILDLCTGSGCIAIACAYAFPEA---EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNP  197 (284)
T ss_pred             CEEEEEeCchhHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECC
Confidence            57999999999999999754  23   55667765 666555443    54   22 2344444442  35899999863


Q ss_pred             ccccccC-----CCC--C--------CCCC-CccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEec
Q 017068          295 IESLIKN-----PGS--N--------KNSC-SLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHD  355 (378)
Q Consensus       295 ~~~~~~~-----~~~--~--------~~~c-~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~~  355 (378)
                      -+.....     +..  +        .+.. .+..++-+.-+.|+|||.+++.-..+. .+++++.+...|...-.+
T Consensus       198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~  273 (284)
T TIGR03533       198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFE  273 (284)
T ss_pred             CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeec
Confidence            2211000     000  0        0000 124677888999999999998644333 678887776555544443

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.23  E-value=0.00091  Score=63.14  Aligned_cols=74  Identities=16%  Similarity=0.160  Sum_probs=53.6

Q ss_pred             CeEEEecCCCCChHHHHHHH-HHcCC----------------CeEEEEcccCCCCCC-CCceeEEEecCccccccCCh-H
Q 017068            5 NILTLSFAPRDSHKAQIQFA-LERGI----------------PAFVAMLGTRRLPFP-AFSFDIVHCSRCLIPFTAYN-A   65 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A-~erg~----------------~~~~~v~dae~LPfp-d~SFD~V~cs~~l~hw~~~~-~   65 (378)
                      +|+|++++|     ..++.| .++++                .+.+.++|...++.. ...||.|+-..+++|++... .
T Consensus        61 ~V~avD~s~-----~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~  135 (218)
T PRK13255         61 EVLGVELSE-----LAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRE  135 (218)
T ss_pred             eEEEEccCH-----HHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHH
Confidence            577777775     555554 34444                345677888777543 36899999888888987643 5


Q ss_pred             HHHHHHhhcccCCcEEEE
Q 017068           66 TYLIEVDRLLRPGGYLVI   83 (378)
Q Consensus        66 ~~L~Ev~RVLkPGG~lvi   83 (378)
                      .+++.+.++|||||++++
T Consensus       136 ~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        136 RYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             HHHHHHHHHcCCCCeEEE
Confidence            899999999999996443

>PRK14967 putative methyltransferase; Provisional

Probab=97.23  E-value=0.00015  Score=67.81  Aligned_cols=124  Identities=15%  Similarity=0.183  Sum_probs=68.4

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hcc-c-cccccccccCCCCCCccccccccCcccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGL-I-GVYHDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGl-i-g~~~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      -.|||+|||.|.++..+...+.  -+|+-.|-. .++..+-+    .|+ + -+..|+.+.++  +.+||+|.++--+..
T Consensus        38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~  113 (223)
T PRK14967         38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPYVP  113 (223)
T ss_pred             CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCCCC
Confidence            4799999999999888776532  144555544 55543333    233 1 12235554332  368999999743321


Q ss_pred             ccCCCC------------CCCCCCccceeeeecccccCCCeEEEeC-CHHHHHHHHHHHhcCCceEEE
Q 017068          299 IKNPGS------------NKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       299 ~~~~~~------------~~~~c~~~~~l~EmDRiLRPgG~~ii~d-~~~~~~~~~~~~~~l~W~~~~  353 (378)
                      -...+.            ......+..++-++-|+|+|||.+++-. +.....++.+.+++-.+++..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~  181 (223)
T PRK14967        114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEV  181 (223)
T ss_pred             CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEE
Confidence            110000            0011123456778999999999998842 222333444444544554443

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.22  E-value=0.00012  Score=65.96  Aligned_cols=146  Identities=19%  Similarity=0.252  Sum_probs=72.8

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCCC-----eeEEEeccCCCCcchHHHHhhccc---cccccccccCCCCCCcccccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSDP-----VWVMNVVPARKSSTLSVIYDRGLI---GVYHDWCEPFSTYPRTYDLIH  291 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~~-----vwvmnv~p~~~~~~l~~i~eRGli---g~~~~w~~~f~typrtyDliH  291 (378)
                      +..+.-.+|||+||+.|||..+++.+.     |+-+-+.|.+....+..+  +|=+   .....-.+.++.-...+|+|.
T Consensus        19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~   96 (181)
T PF01728_consen   19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL   96 (181)
T ss_dssp             S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred             CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence            455678999999999999999999887     233344443221111111  1111   111122222221126899999


Q ss_pred             ccCccccccCCCCCCCCCCccceeee---ecccccCCCeEEEe-----CCHHHHHHHHHHHhcCCceEEEecCCCCCCCC
Q 017068          292 VSGIESLIKNPGSNKNSCSLVDLMVE---MDRMLRPEGTVVVR-----DSPEVIDKVSRIANTVRWTAAVHDKEPGSNGR  363 (378)
Q Consensus       292 ~~~~~~~~~~~~~~~~~c~~~~~l~E---mDRiLRPgG~~ii~-----d~~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~  363 (378)
                      |+..+..-..+..+ ..-.+..++-+   +-..|+|||.+|+-     +..+.+..++...+..++-.-..   .++.+.
T Consensus        97 ~D~~~~~~g~~~~d-~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp~~---sr~~s~  172 (181)
T PF01728_consen   97 SDMAPNVSGDRNID-EFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKPPS---SRSESS  172 (181)
T ss_dssp             E-------SSHHSS-HHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-TT---SBTTCB
T ss_pred             cccccCCCCchhhH-HHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEECcC---CCCCcc
Confidence            99854321100000 00011122222   23569999988874     23466666776666544433322   234578


Q ss_pred             eEEEEEEe
Q 017068          364 EKILVATK  371 (378)
Q Consensus       364 e~~l~~~K  371 (378)
                      |.+|||.+
T Consensus       173 E~Ylv~~~  180 (181)
T PF01728_consen  173 EEYLVCRG  180 (181)
T ss_dssp             EEEEESEE
T ss_pred             EEEEEEcC
Confidence            99999975

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.22  E-value=0.00064  Score=66.23  Aligned_cols=137  Identities=17%  Similarity=0.238  Sum_probs=87.0

Q ss_pred             ccccchHHHHHHHHHHHHHhh-----h---hcCC----CCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCCcchHHH
Q 017068          197 VFEADSRRWRRRVAYYKNTLN-----V---KLGT----PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVI  264 (378)
Q Consensus       197 ~F~~d~~~w~~~v~~Y~~~~~-----~---~~~~----~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~~~l~~i  264 (378)
                      .|++|.+.+.--=..|-.++.     |   .|.+    ..--.|-|||||-|-.|. -...+|..|-+++.+..-+.   
T Consensus       141 lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~-~~~~kV~SfDL~a~~~~V~~---  216 (325)
T KOG3045|consen  141 LFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS-SERHKVHSFDLVAVNERVIA---  216 (325)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh-ccccceeeeeeecCCCceee---
Confidence            488886665544444444432     1   0111    122358899999998875 34567888888887653110   


Q ss_pred             HhhccccccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHH---H
Q 017068          265 YDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKV---S  341 (378)
Q Consensus       265 ~eRGlig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~---~  341 (378)
                               -|-.. .|.-++|.|++.+  |+|.-        .-++.+.+.|..|||+|||.++|-+-..-...+   .
T Consensus       217 ---------cDm~~-vPl~d~svDvaV~--CLSLM--------gtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~  276 (325)
T KOG3045|consen  217 ---------CDMRN-VPLEDESVDVAVF--CLSLM--------GTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFV  276 (325)
T ss_pred             ---------ccccC-CcCccCcccEEEe--eHhhh--------cccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHH
Confidence                     01111 3555699998776  56643        346789999999999999999998765433333   3


Q ss_pred             HHHhcCCceEEEecCC
Q 017068          342 RIANTVRWTAAVHDKE  357 (378)
Q Consensus       342 ~~~~~l~W~~~~~~~~  357 (378)
                      +-+++|-.++...|..
T Consensus       277 r~l~~lGF~~~~~d~~  292 (325)
T KOG3045|consen  277 RALTKLGFDVKHKDVS  292 (325)
T ss_pred             HHHHHcCCeeeehhhh
Confidence            3367788888766544

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.21  E-value=8.5e-05  Score=72.99  Aligned_cols=122  Identities=21%  Similarity=0.269  Sum_probs=83.8

Q ss_pred             Cccccccch-HHHHHHHHHHHHHhhh-hcCCCCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cch----HHHH
Q 017068          194 GYDVFEADS-RRWRRRVAYYKNTLNV-KLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STL----SVIY  265 (378)
Q Consensus       194 ~~~~F~~d~-~~w~~~v~~Y~~~~~~-~~~~~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l----~~i~  265 (378)
                      |-..|+.++ ..=......+-..+.. .++.|  -+|||+|||-|+++-+++.+ +|   +|+-++-+ +|+    +-|.
T Consensus        42 scayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G--~~lLDiGCGWG~l~~~aA~~y~v---~V~GvTlS~~Q~~~~~~r~~  116 (283)
T COG2230          42 SCAYFEDPDMTLEEAQRAKLDLILEKLGLKPG--MTLLDIGCGWGGLAIYAAEEYGV---TVVGVTLSEEQLAYAEKRIA  116 (283)
T ss_pred             eeEEeCCCCCChHHHHHHHHHHHHHhcCCCCC--CEEEEeCCChhHHHHHHHHHcCC---EEEEeeCCHHHHHHHHHHHH
Confidence            444566664 2333333333332221 15555  47999999999999988865 79   55555555 666    4467


Q ss_pred             hhccc----cccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          266 DRGLI----GVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       266 eRGli----g~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      ++|+-    -.++||+..    +-.||=|.+-+.|-+..       .-+..+++-=+.++|+|||-+++.
T Consensus       117 ~~gl~~~v~v~l~d~rd~----~e~fDrIvSvgmfEhvg-------~~~~~~ff~~~~~~L~~~G~~llh  175 (283)
T COG2230         117 ARGLEDNVEVRLQDYRDF----EEPFDRIVSVGMFEHVG-------KENYDDFFKKVYALLKPGGRMLLH  175 (283)
T ss_pred             HcCCCcccEEEecccccc----ccccceeeehhhHHHhC-------cccHHHHHHHHHhhcCCCceEEEE
Confidence            78995    358888863    33399999999988763       345678899999999999999886

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=97.21  E-value=0.00017  Score=69.41  Aligned_cols=131  Identities=15%  Similarity=0.133  Sum_probs=79.4

Q ss_pred             eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh----ccccccccccccCCC-CCCccccccccCcccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFST-YPRTYDLIHVSGIESL  298 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~w~~~f~t-yprtyDliH~~~~~~~  298 (378)
                      ..|+|+|||+|.++-+|... +-  .+|+-.|.+ ..++.+-+.    |.--+-.|+.+.++. ....||+|-++--+..
T Consensus        88 ~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~  165 (251)
T TIGR03704        88 LVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP  165 (251)
T ss_pred             CEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence            47999999999999887642 21  144566654 555443332    321123455443321 2357999988754332


Q ss_pred             cc-----CCCC--CCCCCC----------ccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEecCCC
Q 017068          299 IK-----NPGS--NKNSCS----------LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEP  358 (378)
Q Consensus       299 ~~-----~~~~--~~~~c~----------~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~~~~~  358 (378)
                      ..     .++.  ...+..          +..++-...++|+|||.+++.-..+...++..++++..|+..+..+++
T Consensus       166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~  242 (251)
T TIGR03704       166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEE  242 (251)
T ss_pred             chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEccc
Confidence            10     0000  000111          236777788999999999987656667788888888888888776654

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=97.21  E-value=8.9e-05  Score=74.56  Aligned_cols=131  Identities=18%  Similarity=0.154  Sum_probs=77.3

Q ss_pred             EEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHH----HhhccccccccccccCCCCCCccccccccCcccccc
Q 017068          227 NIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVI----YDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK  300 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i----~eRGlig~~~~w~~~f~typrtyDliH~~~~~~~~~  300 (378)
                      .|||+|||+|.++.++..+ +-  ..|+-.|.+ ..+..+    -+.|+-+.+. +...++..+..||+|.|+-.|....
T Consensus       199 ~VLDlGCG~G~ls~~la~~~p~--~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~  275 (342)
T PRK09489        199 KVLDVGCGAGVLSAVLARHSPK--IRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI  275 (342)
T ss_pred             eEEEeccCcCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence            5999999999999998765 21  134555554 444332    2234433221 2222333458899999987775321


Q ss_pred             CCCCCCCCCCccceeeeecccccCCCeEEEeCC--HHHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEEEEec
Q 017068          301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS--PEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       301 ~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~--~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~  372 (378)
                          ....-..+.++-++-|.|+|||.++|-..  ..+-..+++.....  ++...      .++-+|+-|+|.
T Consensus       276 ----~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~~la~------~~~f~v~~a~~~  337 (342)
T PRK09489        276 ----QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--EVLAQ------TGRFKVYRAIMT  337 (342)
T ss_pred             ----cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--EEEEe------CCCEEEEEEEcc
Confidence                01112246788999999999999988643  22334445444332  33332      146688888764

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.21  E-value=0.00035  Score=69.25  Aligned_cols=117  Identities=21%  Similarity=0.219  Sum_probs=69.5

Q ss_pred             eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCCCCCCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~typrtyDliH~~~~  295 (378)
                      .+|||+|||+|.++.+|... +-  .+|+..|-+ ..+..+-++    |+   +- +..|+.+.++  +.+||+|.|+--
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP  210 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPP  210 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence            57999999999999988754 22  256777765 666555443    44   22 2345555443  368999998733


Q ss_pred             ccccc-----------CCCC----CCCCC-CccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcC
Q 017068          296 ESLIK-----------NPGS----NKNSC-SLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTV  347 (378)
Q Consensus       296 ~~~~~-----------~~~~----~~~~c-~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l  347 (378)
                      +....           .|..    ..+.. .+..++-+.-+.|+|||.+++.-..+ ..++.++....
T Consensus       211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~  277 (307)
T PRK11805        211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV  277 (307)
T ss_pred             CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence            22110           0000    00000 12367888899999999999853322 34566665544

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.21  E-value=0.00012  Score=56.36  Aligned_cols=95  Identities=24%  Similarity=0.280  Sum_probs=58.2

Q ss_pred             EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHH---hhcc---cccc-ccccccCCCCCCccccccccCcccc
Q 017068          227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY---DRGL---IGVY-HDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~---eRGl---ig~~-~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      +++|+|||.|+++..+...+.  .++.-.|.+ ..+..+-   +.+.   +-.+ .|.......-+..||++.+...+..
T Consensus         1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~   78 (107)
T cd02440           1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH   78 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence            489999999999988887221  244455543 3333222   1111   1111 2222221113478999999888764


Q ss_pred             ccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      +.        -....++-.+.+.|||||++++.
T Consensus        79 ~~--------~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          79 LV--------EDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             hh--------hHHHHHHHHHHHHcCCCCEEEEE
Confidence            21        12357888889999999999986

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=97.20  E-value=0.00091  Score=65.48  Aligned_cols=66  Identities=20%  Similarity=0.211  Sum_probs=51.2

Q ss_pred             HHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           19 AQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        19 ~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .+++.|+++    |..  +.+..+|....++|+  +|+|++++++++|.+.. ..+++++.|+|||||++++...
T Consensus       183 ~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~  255 (306)
T TIGR02716       183 GAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM  255 (306)
T ss_pred             HHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            566666543    443  567778887777775  69999999999987654 4799999999999999999764

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.20  E-value=0.00087  Score=62.18  Aligned_cols=69  Identities=22%  Similarity=0.184  Sum_probs=50.0

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG   78 (378)
                      .|+++++.     +.+++.|+++    +..  +.+..+|+...+.++++||+|++..++.|.       ..|+.|+|+||
T Consensus        99 ~V~~iD~~-----~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~-------~~~l~~~L~~g  166 (205)
T PRK13944         99 KVYTVEIV-----KELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTI-------PSALVRQLKDG  166 (205)
T ss_pred             EEEEEeCC-----HHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCcchh-------hHHHHHhcCcC
Confidence            45556555     5777777653    443  567778887665567899999998776543       35889999999


Q ss_pred             cEEEEEc
Q 017068           79 GYLVISG   85 (378)
Q Consensus        79 G~lvis~   85 (378)
                      |++++..
T Consensus       167 G~lvi~~  173 (205)
T PRK13944        167 GVLVIPV  173 (205)
T ss_pred             cEEEEEE
Confidence            9999854

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=97.19  E-value=8.7e-06  Score=66.50  Aligned_cols=91  Identities=24%  Similarity=0.270  Sum_probs=60.0

Q ss_pred             EEecCCcceeeeeeccCCC--eeEEEeccCCCC-cchHHHHhhcc-----cc-ccccccccCCCCCCccccccccCc-cc
Q 017068          228 IMDMNAFFGGFAAALTSDP--VWVMNVVPARKS-STLSVIYDRGL-----IG-VYHDWCEPFSTYPRTYDLIHVSGI-ES  297 (378)
Q Consensus       228 vlDm~ag~g~faa~L~~~~--vwvmnv~p~~~~-~~l~~i~eRGl-----ig-~~~~w~~~f~typrtyDliH~~~~-~~  297 (378)
                      |||+|||.|....+|.+.-  --...+...|-+ .+|..+.++.-     +- +..|. +.++....+||+|-|.++ |.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~-~~l~~~~~~~D~v~~~~~~~~   79 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA-RDLPFSDGKFDLVVCSGLSLH   79 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT-TCHHHHSSSEEEEEE-TTGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH-hHCcccCCCeeEEEEcCCccC
Confidence            7999999999999887541  011367778866 88888887773     11 12222 223433469999999766 66


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCC
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEG  326 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG  326 (378)
                      ++       +.-.+..++=++=|+|||||
T Consensus        80 ~~-------~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   80 HL-------SPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GS-------SHHHHHHHHHHHHHTEEEEE
T ss_pred             CC-------CHHHHHHHHHHHHHHhCCCC
Confidence            54       33455789999999999998

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.16  E-value=0.0003  Score=65.51  Aligned_cols=90  Identities=18%  Similarity=0.130  Sum_probs=52.9

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHH----hhcc--c-cccccccccCCCCCCccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY----DRGL--I-GVYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~----eRGl--i-g~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      ..|||+|||+|.+++.|....--.-.|+..|.. ..+..+-    +.|+  + -+..|..+.++. ...||+|+++....
T Consensus        79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~~  157 (215)
T TIGR00080        79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVTAAGP  157 (215)
T ss_pred             CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEcCCcc
Confidence            479999999999999886531100013444433 4444333    2344  1 123344443332 25899999864332


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                                     .+.-++-+.|+|||.+|+.
T Consensus       158 ---------------~~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       158 ---------------KIPEALIDQLKEGGILVMP  176 (215)
T ss_pred             ---------------cccHHHHHhcCcCcEEEEE
Confidence                           2334567889999999885

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.16  E-value=0.00067  Score=68.11  Aligned_cols=72  Identities=31%  Similarity=0.408  Sum_probs=52.1

Q ss_pred             CChHHHHHHHHHcC---------------CCeEEEEcccC------CCCCCCCceeEEEecCccccccCCh---HHHHHH
Q 017068           15 DSHKAQIQFALERG---------------IPAFVAMLGTR------RLPFPAFSFDIVHCSRCLIPFTAYN---ATYLIE   70 (378)
Q Consensus        15 D~se~~vq~A~erg---------------~~~~~~v~dae------~LPfpd~SFD~V~cs~~l~hw~~~~---~~~L~E   70 (378)
                      |+|...|+.|++|.               ..+.+..+|..      .++.+...||+|.|.+++|+.-..+   ..+|+.
T Consensus        92 Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~N  171 (331)
T PF03291_consen   92 DISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKN  171 (331)
T ss_dssp             ES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHH
Confidence            45567888888875               24556666643      2233346999999999998876655   368999


Q ss_pred             HhhcccCCcEEEEEcC
Q 017068           71 VDRLLRPGGYLVISGP   86 (378)
Q Consensus        71 v~RVLkPGG~lvis~p   86 (378)
                      +.+.|||||+|+.+.|
T Consensus       172 vs~~Lk~GG~FIgT~~  187 (331)
T PF03291_consen  172 VSSLLKPGGYFIGTTP  187 (331)
T ss_dssp             HHHTEEEEEEEEEEEE
T ss_pred             HHHhcCCCCEEEEEec
Confidence            9999999999999987

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=97.16  E-value=0.00046  Score=64.08  Aligned_cols=68  Identities=24%  Similarity=0.230  Sum_probs=52.4

Q ss_pred             CCChHHHHHHHHHcC----C--CeEEEEcccCCCCCCCCceeEEEecCccccccCC-hHHHHHHHhhcccCCcEEEEE
Q 017068           14 RDSHKAQIQFALERG----I--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVIS   84 (378)
Q Consensus        14 ~D~se~~vq~A~erg----~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~-~~~~L~Ev~RVLkPGG~lvis   84 (378)
                      .|+|+.+++.|+++.    .  .+.+.++|.+.++   ++||+|++..+++|++.. ...+++++.|++++|+++.++
T Consensus        83 vD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021        83 VDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             EECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            345578888887752    2  4667888887776   899999999999898653 258899999999988777654

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.15  E-value=0.001  Score=66.01  Aligned_cols=76  Identities=25%  Similarity=0.295  Sum_probs=60.3

Q ss_pred             EEecCCCCChHHHHHHHHHc-CCCe-EEEE-cccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068            8 TLSFAPRDSHKAQIQFALER-GIPA-FVAM-LGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS   84 (378)
Q Consensus         8 ~ms~ap~D~se~~vq~A~er-g~~~-~~~v-~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis   84 (378)
                      .+.|.|....-.|-+++++- |... .+.. ...+.||. .++||+|+|.-+++|-.++- ..|.++...|||||.+++-
T Consensus       141 ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl-~~L~~Lk~~L~~gGeLvLE  218 (315)
T PF08003_consen  141 VIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPL-DHLKQLKDSLRPGGELVLE  218 (315)
T ss_pred             EEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhccCCHH-HHHHHHHHhhCCCCEEEEE
Confidence            46777887777777666664 2222 2222 57899998 89999999999999988888 9999999999999999974


Q ss_pred             c
Q 017068           85 G   85 (378)
Q Consensus        85 ~   85 (378)
                      +
T Consensus       219 T  219 (315)
T PF08003_consen  219 T  219 (315)
T ss_pred             E
Confidence            3

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.15  E-value=0.00015  Score=67.12  Aligned_cols=98  Identities=13%  Similarity=0.121  Sum_probs=62.0

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----ccccccccccccCCCCCCccccccccCccccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYPRTYDLIHVSGIESLI  299 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~w~~~f~typrtyDliH~~~~~~~~  299 (378)
                      -.+|||+|||.|.|+..|.+...   .|.-.|.+ ++++.+-++    |+-...+-....++..+.+||+|.|..++..+
T Consensus        64 ~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~  140 (230)
T PRK07580         64 GLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHY  140 (230)
T ss_pred             CCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcC
Confidence            46899999999999999987654   46677765 777666554    22111111112244445789999998887655


Q ss_pred             cCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          300 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       300 ~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .       .-.+..++-++-|++++++.+.+..
T Consensus       141 ~-------~~~~~~~l~~l~~~~~~~~~i~~~~  166 (230)
T PRK07580        141 P-------QEDAARMLAHLASLTRGSLIFTFAP  166 (230)
T ss_pred             C-------HHHHHHHHHHHHhhcCCeEEEEECC
Confidence            3       1234567777778776555544433

>PRK04266 fibrillarin; Provisional

Probab=97.14  E-value=0.0024  Score=60.70  Aligned_cols=72  Identities=18%  Similarity=0.275  Sum_probs=45.0

Q ss_pred             CeEEEecCCCCChHHHHH----HHHHcCCCeEEEEcccCC----CCCCCCceeEEEecCccccccCChHHHHHHHhhccc
Q 017068            5 NILTLSFAPRDSHKAQIQ----FALERGIPAFVAMLGTRR----LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLR   76 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq----~A~erg~~~~~~v~dae~----LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLk   76 (378)
                      .|+++++.|     .|++    .|+++ .++.+..+|+..    .+++ ++||+|++...   -++....+++|+.|+||
T Consensus        98 ~V~avD~~~-----~ml~~l~~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~~---~p~~~~~~L~~~~r~LK  167 (226)
T PRK04266         98 VVYAVEFAP-----RPMRELLEVAEER-KNIIPILADARKPERYAHVV-EKVDVIYQDVA---QPNQAEIAIDNAEFFLK  167 (226)
T ss_pred             eEEEEECCH-----HHHHHHHHHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEEECCC---ChhHHHHHHHHHHHhcC
Confidence            366666654     5555    44443 345666677653    2233 56999986422   11122356899999999


Q ss_pred             CCcEEEEEcC
Q 017068           77 PGGYLVISGP   86 (378)
Q Consensus        77 PGG~lvis~p   86 (378)
                      |||+|+++.+
T Consensus       168 pGG~lvI~v~  177 (226)
T PRK04266        168 DGGYLLLAIK  177 (226)
T ss_pred             CCcEEEEEEe
Confidence            9999999744

>PRK04457 spermidine synthase; Provisional

Probab=97.11  E-value=0.00081  Score=65.10  Aligned_cols=140  Identities=16%  Similarity=0.134  Sum_probs=76.4

Q ss_pred             CCCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh-cccc-------ccccccccCCCCCCcccccc
Q 017068          222 TPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR-GLIG-------VYHDWCEPFSTYPRTYDLIH  291 (378)
Q Consensus       222 ~~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR-Glig-------~~~~w~~~f~typrtyDliH  291 (378)
                      ...-+.|||+|||.|+++..+... |-  +.|.-.+-. ..+.++-+. ++.+       +..|-.+-+...+.+||+|-
T Consensus        64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~  141 (262)
T PRK04457         64 NPRPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVIL  141 (262)
T ss_pred             CCCCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEE
Confidence            345688999999999999877543 21  244555543 555555444 1111       12233332344567899997


Q ss_pred             ccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe---CCHHHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEE
Q 017068          292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR---DSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILV  368 (378)
Q Consensus       292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~---d~~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~  368 (378)
                      ++. |..   ...+.. .....++-++-++|+|||.+++-   .+...-..++.+.+.+.-.+.....+.   ....+++
T Consensus       142 ~D~-~~~---~~~~~~-l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~---~~N~v~~  213 (262)
T PRK04457        142 VDG-FDG---EGIIDA-LCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAES---HGNVAVF  213 (262)
T ss_pred             EeC-CCC---CCCccc-cCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCC---CccEEEE
Confidence            752 321   111111 22357888999999999999983   232222223333333332222332221   2346788


Q ss_pred             EEe
Q 017068          369 ATK  371 (378)
Q Consensus       369 ~~K  371 (378)
                      |.|
T Consensus       214 a~~  216 (262)
T PRK04457        214 AFK  216 (262)
T ss_pred             EEC
Confidence            876

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.09  E-value=0.00084  Score=66.75  Aligned_cols=73  Identities=22%  Similarity=0.191  Sum_probs=52.1

Q ss_pred             CCChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEecCc--c-----cccc-CChHHHHHHHhhcccCCcE
Q 017068           14 RDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRC--L-----IPFT-AYNATYLIEVDRLLRPGGY   80 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~cs~~--l-----~hw~-~~~~~~L~Ev~RVLkPGG~   80 (378)
                      .|+++.|++.|+++    |+. +.+..+|+.++|+++++||+|++.--  .     .+.. +.-..++.++.|+|||||+
T Consensus       210 ~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~  289 (329)
T TIGR01177       210 CDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGW  289 (329)
T ss_pred             EcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcE
Confidence            35556777766654    443 46778899999999999999998521  1     0101 1124899999999999999


Q ss_pred             EEEEcC
Q 017068           81 LVISGP   86 (378)
Q Consensus        81 lvis~p   86 (378)
                      +++..+
T Consensus       290 lv~~~~  295 (329)
T TIGR01177       290 IVYAVP  295 (329)
T ss_pred             EEEEEc
Confidence            998876

This family is found exclusively in the Archaea.

>PTZ00146 fibrillarin; Provisional

Probab=97.08  E-value=0.0016  Score=64.51  Aligned_cols=77  Identities=16%  Similarity=0.197  Sum_probs=52.3

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCC---CCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEE
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRR---LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYL   81 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~---LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~l   81 (378)
                      .|+|++++|. .-+.+++.|+++ .++.....|+..   ++++..+||+|++... .  +++...++.|+.|+|||||+|
T Consensus       159 ~VyAVD~s~r-~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva-~--pdq~~il~~na~r~LKpGG~~  233 (293)
T PTZ00146        159 VVYAVEFSHR-SGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADVA-Q--PDQARIVALNAQYFLKNGGHF  233 (293)
T ss_pred             EEEEEECcHH-HHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEeCC-C--cchHHHHHHHHHHhccCCCEE
Confidence            4888888843 223567777765 345666677643   2334568999998763 2  344436777999999999999


Q ss_pred             EEEcC
Q 017068           82 VISGP   86 (378)
Q Consensus        82 vis~p   86 (378)
                      ++...
T Consensus       234 vI~ik  238 (293)
T PTZ00146        234 IISIK  238 (293)
T ss_pred             EEEEe
Confidence            99644

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.04  E-value=0.0015  Score=50.16  Aligned_cols=70  Identities=29%  Similarity=0.327  Sum_probs=49.4

Q ss_pred             CChHHHHHHHHH---cC--CCeEEEEcccCCCCC-CCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068           15 DSHKAQIQFALE---RG--IPAFVAMLGTRRLPF-PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS   84 (378)
Q Consensus        15 D~se~~vq~A~e---rg--~~~~~~v~dae~LPf-pd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis   84 (378)
                      |.++.+++.+++   .+  ....+...+....+. +.+.||+|++..++.++.......++.+.+.|||||.++++
T Consensus        28 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          28 DISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            344566766662   11  234556666655553 67889999999988763333348999999999999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.04  E-value=0.0016  Score=63.72  Aligned_cols=71  Identities=15%  Similarity=0.225  Sum_probs=48.5

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCCe--EEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIPA--FVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~~--~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG   78 (378)
                      .|+++++.     +.+++.|+++    ++..  .+...+  .+++.+++||+|+|+....    .-..++.++.|+||||
T Consensus       184 ~V~avDid-----~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~~~----~l~~ll~~~~~~Lkpg  252 (288)
T TIGR00406       184 KVVGIDID-----PLAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANILAE----VIKELYPQFSRLVKPG  252 (288)
T ss_pred             eEEEEECC-----HHHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecCHH----HHHHHHHHHHHHcCCC
Confidence            46666655     5777777775    3332  222222  3456678999999875432    1237889999999999


Q ss_pred             cEEEEEcC
Q 017068           79 GYLVISGP   86 (378)
Q Consensus        79 G~lvis~p   86 (378)
                      |+|++++.
T Consensus       253 G~li~sgi  260 (288)
T TIGR00406       253 GWLILSGI  260 (288)
T ss_pred             cEEEEEeC
Confidence            99999985

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR03438 probable methyltransferase

Probab=97.03  E-value=0.0011  Score=65.27  Aligned_cols=76  Identities=18%  Similarity=0.218  Sum_probs=51.9

Q ss_pred             cCCCCChHHHHHHHHHc------CCCeEEEEcccCC-CCCCCCc----eeEEEecCccccccCCh-HHHHHHHhhcccCC
Q 017068           11 FAPRDSHKAQIQFALER------GIPAFVAMLGTRR-LPFPAFS----FDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPG   78 (378)
Q Consensus        11 ~ap~D~se~~vq~A~er------g~~~~~~v~dae~-LPfpd~S----FD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPG   78 (378)
                      +.+.|+|++|++.|+++      ++++....+|... ++++...    ..++++..++.|+...+ ..+|+++.++|+||
T Consensus        91 ~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pg  170 (301)
T TIGR03438        91 YVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPG  170 (301)
T ss_pred             EEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCC
Confidence            44556678998888775      2344556777654 4555443    44555556676665433 47899999999999


Q ss_pred             cEEEEEcC
Q 017068           79 GYLVISGP   86 (378)
Q Consensus        79 G~lvis~p   86 (378)
                      |.|++...
T Consensus       171 G~~lig~d  178 (301)
T TIGR03438       171 GGLLIGVD  178 (301)
T ss_pred             CEEEEecc
Confidence            99998654

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.02  E-value=0.00016  Score=65.13  Aligned_cols=113  Identities=19%  Similarity=0.175  Sum_probs=67.1

Q ss_pred             eeEEEecCCcceeeeeeccCCC-eeEEEeccCCCC-cchHHHHh----hccc---cccccccccCCCCCCccccccccCc
Q 017068          225 IRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYD----RGLI---GVYHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~-~~l~~i~e----RGli---g~~~~w~~~f~typrtyDliH~~~~  295 (378)
                      -.+|||+|||+|-.|.+|..+. -.  .|...|.. ..+..+.+    .++-   -+.+|+.+.++  +..||+|-|+--
T Consensus        32 ~~~vLDlG~G~G~i~~~la~~~~~~--~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP  107 (170)
T PF05175_consen   32 GGRVLDLGCGSGVISLALAKRGPDA--KVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPP  107 (170)
T ss_dssp             TCEEEEETSTTSHHHHHHHHTSTCE--EEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---
T ss_pred             CCeEEEecCChHHHHHHHHHhCCCC--EEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccc
Confidence            4569999999999988887542 21  24555654 44444332    2321   24567776655  589999998744


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeE--EEeCCHHHHHHHHHHHh
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTV--VVRDSPEVIDKVSRIAN  345 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~--ii~d~~~~~~~~~~~~~  345 (378)
                      |..-.    ......+..++-+--|+|+|||.+  +++...+.-..++++..
T Consensus       108 ~~~~~----~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~  155 (170)
T PF05175_consen  108 FHAGG----DDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG  155 (170)
T ss_dssp             SBTTS----HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred             hhccc----ccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence            32110    001123467888999999999987  44444444444555544

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.00  E-value=0.00065  Score=69.08  Aligned_cols=52  Identities=21%  Similarity=0.406  Sum_probs=47.7

Q ss_pred             EEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068           32 FVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS   84 (378)
Q Consensus        32 ~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis   84 (378)
                      .+.+.+....||+|++||.|-+..+..|-++.. .+++|+.|||+|||+++.-
T Consensus       163 ~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~-~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  163 NFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLE-KVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             ceehhhhhcCCCCccccCcEEEEeecccCCcHH-HHHHHHhcccCCCceEEeH
Confidence            456678889999999999999999999999988 9999999999999999973

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.99  E-value=0.00024  Score=68.09  Aligned_cols=75  Identities=20%  Similarity=0.244  Sum_probs=63.3

Q ss_pred             cCCCCChHHHHHHHHHcCCCeEEEEcccC-CCC-CCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           11 FAPRDSHKAQIQFALERGIPAFVAMLGTR-RLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        11 ~ap~D~se~~vq~A~erg~~~~~~v~dae-~LP-fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +...|+|++|+++|.++|+.-.+.++++. -++ ..+..||+|++..++.+..+-+ .++.-+.+.|+|||.|.||..
T Consensus       150 ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le-~~~~~aa~~L~~gGlfaFSvE  226 (287)
T COG4976         150 LTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALE-GLFAGAAGLLAPGGLFAFSVE  226 (287)
T ss_pred             ccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchh-hHHHHHHHhcCCCceEEEEec
Confidence            56779999999999999976555666654 233 5678999999999999988877 899999999999999999966

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=96.98  E-value=0.00047  Score=68.21  Aligned_cols=132  Identities=17%  Similarity=0.241  Sum_probs=71.2

Q ss_pred             cCCCCeeEEEecCCcceeee--eecc-CCCeeEEEeccCCCCcchHHHHhhccccccc-cccccCCCCCCccccccccCc
Q 017068          220 LGTPAIRNIMDMNAFFGGFA--AALT-SDPVWVMNVVPARKSSTLSVIYDRGLIGVYH-DWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~fa--a~L~-~~~vwvmnv~p~~~~~~l~~i~eRGlig~~~-~w~~~f~typrtyDliH~~~~  295 (378)
                      ...|  .+|||+|||+|=+|  |+++ .+.|.-.-+-|..-.+...-+...|+-.-+. ...+.++.  ..||+|-|+=+
T Consensus       159 ~~~g--~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~--~~~dlvvANI~  234 (295)
T PF06325_consen  159 VKPG--KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVE--GKFDLVVANIL  234 (295)
T ss_dssp             SSTT--SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCC--S-EEEEEEES-
T ss_pred             ccCC--CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccccc--ccCCEEEECCC
Confidence            3444  49999999999654  4444 2345333222221112333344445422110 01222222  78999998755


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH-HHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEEEEec
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~  372 (378)
                      ..-+            ..++=++.+.|+|||++|++.-. +..+.|.+.++. -|++.....+    +.=.-|+++|+
T Consensus       235 ~~vL------------~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~----~~W~~l~~~Kk  295 (295)
T PF06325_consen  235 ADVL------------LELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE----GEWVALVFKKK  295 (295)
T ss_dssp             HHHH------------HHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE----TTEEEEEEEE-
T ss_pred             HHHH------------HHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE----CCEEEEEEEeC
Confidence            4433            24666789999999999999743 345666666666 7777654332    23345556664

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=96.98  E-value=0.0042  Score=62.56  Aligned_cols=99  Identities=18%  Similarity=0.146  Sum_probs=61.9

Q ss_pred             CCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccCC----hHHHHHHHhhcccCCcEEEEEc
Q 017068           14 RDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY----NATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~----~~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      .|+|+.+++.|+++    ++...+...|...  ..++.||+|+|+..+|+....    ...+++++.|.|||||.|++..
T Consensus       226 vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa  303 (342)
T PRK09489        226 SDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA  303 (342)
T ss_pred             EECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence            45556788777653    4555555555533  346889999998876543222    2488999999999999998876


Q ss_pred             CCCCCCccchHHHH-HHHHHHHhceeeeccccceEEEe
Q 017068           86 PPVQWPKQDKEWAD-LQAVARALCYELIAVDGNTVIWK  122 (378)
Q Consensus        86 pp~~~~~~~~~w~~-l~~l~~~lcw~~~~~~~~~~iw~  122 (378)
                      ..   ..+   |.. ++....  ..+.+++.+...+|+
T Consensus       304 n~---~l~---y~~~l~~~Fg--~~~~la~~~~f~v~~  333 (342)
T PRK09489        304 NA---FLP---YPDLLDETFG--SHEVLAQTGRFKVYR  333 (342)
T ss_pred             eC---CCC---hHHHHHHHcC--CeEEEEeCCCEEEEE
Confidence            41   111   222 222222  236666777777775

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=96.97  E-value=0.00029  Score=67.66  Aligned_cols=94  Identities=14%  Similarity=0.213  Sum_probs=73.8

Q ss_pred             EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccc-cccccccccC---CCCC-CccccccccCcccccc
Q 017068          227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLI-GVYHDWCEPF---STYP-RTYDLIHVSGIESLIK  300 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGli-g~~~~w~~~f---~typ-rtyDliH~~~~~~~~~  300 (378)
                      .|||+|||-|.++-.|...+-   +|.-.|.+ ..++++-.+.+. |+.-++...-   ..-. -+||.|-|.-++.+..
T Consensus        62 ~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~  138 (243)
T COG2227          62 RVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP  138 (243)
T ss_pred             eEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence            489999999999999998886   89999987 888888877773 4444554330   0111 5899999998888775


Q ss_pred             CCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       301 ~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                               +.+.++.+..+.+||||.++++.
T Consensus       139 ---------dp~~~~~~c~~lvkP~G~lf~ST  161 (243)
T COG2227         139 ---------DPESFLRACAKLVKPGGILFLST  161 (243)
T ss_pred             ---------CHHHHHHHHHHHcCCCcEEEEec
Confidence                     23569999999999999999985

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=96.96  E-value=0.00052  Score=70.33  Aligned_cols=120  Identities=14%  Similarity=0.081  Sum_probs=71.9

Q ss_pred             eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cch----HHHHhhcc--cc-ccccccccCCCCC-CccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STL----SVIYDRGL--IG-VYHDWCEPFSTYP-RTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l----~~i~eRGl--ig-~~~~w~~~f~typ-rtyDliH~~~  294 (378)
                      ..+||+|||.|.|..+|..+  ..   |++-.+-. ..+    .-+.++|+  +- +..|-.+-+...| .++|.|++..
T Consensus       124 p~vLEIGcGsG~~ll~lA~~~P~~---~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF  200 (390)
T PRK14121        124 KILIEIGFGSGRHLLYQAKNNPNK---LFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF  200 (390)
T ss_pred             CeEEEEcCcccHHHHHHHHhCCCC---CEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence            57999999999999999754  34   55666654 333    33445565  21 2334322222233 7999998752


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEEe-CCHHHHHHHHHHH-hcCCceE
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIA-NTVRWTA  351 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-d~~~~~~~~~~~~-~~l~W~~  351 (378)
                      . ..|..  ....|=-....|-|+-|+|+|||.+.++ |..++.+.+.+.+ +.-+++.
T Consensus       201 P-dPW~K--krHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~  256 (390)
T PRK14121        201 P-VPWDK--KPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI  256 (390)
T ss_pred             C-CCccc--cchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence            1 33421  1111222257899999999999999886 5556655554443 3335554

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.93  E-value=0.00017  Score=67.94  Aligned_cols=118  Identities=17%  Similarity=0.264  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHHHHH-----hhhhcCCCCeeEEEecCCcceeeeeeccC-CCeeEEEeccCCCCcchHHHHhh-ccccccc
Q 017068          202 SRRWRRRVAYYKNT-----LNVKLGTPAIRNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKSSTLSVIYDR-GLIGVYH  274 (378)
Q Consensus       202 ~~~w~~~v~~Y~~~-----~~~~~~~~~iR~vlDm~ag~g~faa~L~~-~~vwvmnv~p~~~~~~l~~i~eR-Glig~~~  274 (378)
                      .+.|...+..+...     +.....+.++++|+|+|+|.|.|+++++. .|=+  .++-.|.+..++.+.+. .+--+=+
T Consensus        73 ~~~f~~~m~~~~~~~~~~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l--~~~v~Dlp~v~~~~~~~~rv~~~~g  150 (241)
T PF00891_consen   73 AKRFNAAMAEYSRLNAFDILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNL--RATVFDLPEVIEQAKEADRVEFVPG  150 (241)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTS--EEEEEE-HHHHCCHHHTTTEEEEES
T ss_pred             HHHHHHHHHhhhhcchhhhhhccccccCccEEEeccCcchHHHHHHHHHCCCC--cceeeccHhhhhccccccccccccc
Confidence            34555555554332     22346778899999999999999999963 2211  23334444434333331 1111233


Q ss_pred             cccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCC--CeEEEeC
Q 017068          275 DWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPE--GTVVVRD  332 (378)
Q Consensus       275 ~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPg--G~~ii~d  332 (378)
                      |.-   .++|. +|++...+++..|.     .+.|  ..||--+-+.|+||  |.++|-|
T Consensus       151 d~f---~~~P~-~D~~~l~~vLh~~~-----d~~~--~~iL~~~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  151 DFF---DPLPV-ADVYLLRHVLHDWS-----DEDC--VKILRNAAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             -TT---TCCSS-ESEEEEESSGGGS------HHHH--HHHHHHHHHHSEECTTEEEEEEE
T ss_pred             cHH---hhhcc-ccceeeehhhhhcc-----hHHH--HHHHHHHHHHhCCCCCCeEEEEe
Confidence            333   45566 99999999999986     2334  68899999999999  9999976

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.90  E-value=0.00067  Score=62.94  Aligned_cols=88  Identities=22%  Similarity=0.181  Sum_probs=52.5

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHH----Hhhcccc---cc-ccccccCCCCCCcccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVI----YDRGLIG---VY-HDWCEPFSTYPRTYDLIHVS  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i----~eRGlig---~~-~~w~~~f~typrtyDliH~~  293 (378)
                      ..|||+|||+|.+++.|...   .-   .|+-.|.. ..+..+    ...|+..   ++ .|-.+.++. ..+||.|.+.
T Consensus        74 ~~VLDiG~GsG~~~~~la~~~~~~g---~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~  149 (205)
T PRK13944         74 MKILEVGTGSGYQAAVCAEAIERRG---KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVT  149 (205)
T ss_pred             CEEEEECcCccHHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEc
Confidence            46999999999998777532   22   22333433 444332    2334422   22 244343332 3689999987


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ..+...               .-|+-|+|+|||.+++--
T Consensus       150 ~~~~~~---------------~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        150 AAASTI---------------PSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             cCcchh---------------hHHHHHhcCcCcEEEEEE
Confidence            554322               236679999999998853

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=96.89  E-value=0.001  Score=65.98  Aligned_cols=129  Identities=15%  Similarity=0.174  Sum_probs=75.4

Q ss_pred             CeeEEEecCCcceeeeeeccCCCeeEEEeccCCC-CcchHHHHhhccccccc----cccccCCCCC--CccccccccCcc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARK-SSTLSVIYDRGLIGVYH----DWCEPFSTYP--RTYDLIHVSGIE  296 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~-~~~l~~i~eRGlig~~~----~w~~~f~typ--rtyDliH~~~~~  296 (378)
                      +=+||||+|||+|=+|-|.++...=  -|+..|- +-.++++.|.=..--.+    .-.-..+..+  +.||+|.|+= +
T Consensus       162 ~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L  238 (300)
T COG2264         162 KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L  238 (300)
T ss_pred             CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h
Confidence            5689999999999887666544320  1244553 24444444432211111    1000112233  4899999953 2


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH-HHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEEEEe
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATK  371 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K  371 (378)
                      ..-           +..+.=++-|.|+|||++|++.=. +..+.+.+.+.+=-|++..+-..     .|.+.+.-|
T Consensus       239 A~v-----------l~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~-----~eW~~i~~k  298 (300)
T COG2264         239 AEV-----------LVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER-----EEWVAIVGK  298 (300)
T ss_pred             HHH-----------HHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec-----CCEEEEEEE
Confidence            111           124555778999999999999853 34666777777778888765432     455555443

>PRK14967 putative methyltransferase; Provisional

Probab=96.88  E-value=0.0044  Score=57.97  Aligned_cols=76  Identities=18%  Similarity=0.214  Sum_probs=50.0

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccCC-----------------
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-----------------   63 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~-----------------   63 (378)
                      .|++++++     +.+++.|+++    +..+.+..+|... .+++++||+|+|+--..+-...                 
T Consensus        61 ~v~~vD~s-----~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~  134 (223)
T PRK14967         61 SVTAVDIS-----RRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDG  134 (223)
T ss_pred             eEEEEECC-----HHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcH
Confidence            45666665     4677766653    4556666677654 4678899999997422211110                 


Q ss_pred             ---hHHHHHHHhhcccCCcEEEEEcC
Q 017068           64 ---NATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        64 ---~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                         -..+++++.++|||||.+++..+
T Consensus       135 ~~~~~~~l~~a~~~Lk~gG~l~~~~~  160 (223)
T PRK14967        135 RAVLDRLCDAAPALLAPGGSLLLVQS  160 (223)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence               12577899999999999998654

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=96.87  E-value=0.002  Score=59.66  Aligned_cols=66  Identities=24%  Similarity=0.243  Sum_probs=47.3

Q ss_pred             CCChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEE
Q 017068           14 RDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLV   82 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lv   82 (378)
                      .|.|+.+++.|+++    +.  .+.+..+|   ++..+++||+|+|..+++|++++. ...++++.+++++|+.+.
T Consensus        91 ~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~  163 (230)
T PRK07580         91 SDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT  163 (230)
T ss_pred             EECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence            44557888888875    22  34566655   566789999999999999988654 478889988876544433

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=96.79  E-value=0.00066  Score=64.11  Aligned_cols=95  Identities=9%  Similarity=0.005  Sum_probs=62.9

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchH-HHHhhcccccc--------------ccccccC---CCCC-C
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLS-VIYDRGLIGVY--------------HDWCEPF---STYP-R  285 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~-~i~eRGlig~~--------------~~w~~~f---~typ-r  285 (378)
                      ..|||.|||.|.-+.+|.+++.   +|+.+|-+ .-++ +.-++|+....              +-++.-+   ++.+ .
T Consensus        39 ~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~  115 (218)
T PRK13255         39 SRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA  115 (218)
T ss_pred             CeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence            3899999999999999999988   77888865 4444 34577774221              0011111   1112 3


Q ss_pred             ccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEE
Q 017068          286 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV  330 (378)
Q Consensus       286 tyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii  330 (378)
                      +||+|-...+|..+.       ...-..++-.|.++|+|||++++
T Consensus       116 ~fd~v~D~~~~~~l~-------~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        116 DVDAVYDRAALIALP-------EEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             CeeEEEehHhHhhCC-------HHHHHHHHHHHHHHcCCCCeEEE
Confidence            678877777766552       11124788999999999997544

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=96.78  E-value=0.0022  Score=60.83  Aligned_cols=133  Identities=15%  Similarity=0.235  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHHHHHhhhh----cCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-------
Q 017068          202 SRRWRRRVAYYKNTLNVK----LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-------  269 (378)
Q Consensus       202 ~~~w~~~v~~Y~~~~~~~----~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-------  269 (378)
                      +..+++.++.|++.|=..    +....==.||.+|||+|.-=-++-..|.  -+|.-.|.. ++-.++ +.-.       
T Consensus        50 t~~yne~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~--~svt~lDpn~~mee~~-~ks~~E~k~~~  126 (252)
T KOG4300|consen   50 TSIYNEIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPI--NSVTCLDPNEKMEEIA-DKSAAEKKPLQ  126 (252)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCCC--ceEEEeCCcHHHHHHH-HHHHhhccCcc
Confidence            467788888888665322    2333344689999999976555544443  134444544 333322 2111       


Q ss_pred             cc-ccccccccCCC-CCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC----HHHHHHH-HH
Q 017068          270 IG-VYHDWCEPFST-YPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS----PEVIDKV-SR  342 (378)
Q Consensus       270 ig-~~~~w~~~f~t-yprtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~----~~~~~~~-~~  342 (378)
                      .. ..|---|.+|- -..|||.|.|.-+++.-.         +-...|-|+-|||||||.+|+-+.    -++++++ +.
T Consensus       127 ~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve---------~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~  197 (252)
T KOG4300|consen  127 VERFVVADGENLPQLADGSYDTVVCTLVLCSVE---------DPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQ  197 (252)
T ss_pred             eEEEEeechhcCcccccCCeeeEEEEEEEeccC---------CHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHH
Confidence            11 11222244452 237999999998887443         236799999999999999999764    3455554 33


Q ss_pred             HHhc
Q 017068          343 IANT  346 (378)
Q Consensus       343 ~~~~  346 (378)
                      .+..
T Consensus       198 v~ep  201 (252)
T KOG4300|consen  198 VAEP  201 (252)
T ss_pred             Hhch
Confidence            3443

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.75  E-value=0.00042  Score=64.76  Aligned_cols=87  Identities=17%  Similarity=0.180  Sum_probs=49.0

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----cc--cc-ccccccccCCCCCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GL--IG-VYHDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig-~~~~w~~~f~typrtyDliH~~~  294 (378)
                      ..|||+|||+|.+++.|...   .--   |+-.|.. ..++.+-++    |+  +- +..|-.+.++ -...||.|++..
T Consensus        78 ~~VLdIG~GsG~~t~~la~~~~~~~~---V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~-~~~~fD~I~~~~  153 (212)
T PRK13942         78 MKVLEIGTGSGYHAAVVAEIVGKSGK---VVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE-ENAPYDRIYVTA  153 (212)
T ss_pred             CEEEEECCcccHHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-cCCCcCEEEECC
Confidence            58999999999999777532   222   2333323 444433332    32  11 1112111111 126899999864


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      .+.               .+.-++-+.|+|||.+++-
T Consensus       154 ~~~---------------~~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        154 AGP---------------DIPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             Ccc---------------cchHHHHHhhCCCcEEEEE
Confidence            432               2333556789999999885

>PRK07402 precorrin-6B methylase; Provisional

Probab=96.71  E-value=0.0013  Score=60.26  Aligned_cols=106  Identities=15%  Similarity=0.183  Sum_probs=58.9

Q ss_pred             eEEEecCCcceeeeeeccC--CCeeEEEeccCCCC-cchHHHHh----hcc--cccc-ccccccCCCCCCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKS-STLSVIYD----RGL--IGVY-HDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~--~~vwvmnv~p~~~~-~~l~~i~e----RGl--ig~~-~~w~~~f~typrtyDliH~~~~  295 (378)
                      ..|+|+|||+|.++..+..  ...   .|+-.|.. ..+..+-+    .|+  +-+. .|-.+.++.....+|.++..  
T Consensus        42 ~~VLDiG~G~G~~~~~la~~~~~~---~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~--  116 (196)
T PRK07402         42 SVLWDIGAGTGTIPVEAGLLCPKG---RVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE--  116 (196)
T ss_pred             CEEEEeCCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE--
Confidence            4799999999999877642  223   34555543 44444332    243  1111 11111111111123544332  


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-HHHHHHHHHHHhcC
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTV  347 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-~~~~~~~~~~~~~l  347 (378)
                                 ....+..++-++.|+|+|||.+++... .+.+..+.+..+.+
T Consensus       117 -----------~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~  158 (196)
T PRK07402        117 -----------GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL  158 (196)
T ss_pred             -----------CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc
Confidence                       112356889999999999999998854 34555565655554

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.67  E-value=0.0078  Score=47.25  Aligned_cols=71  Identities=31%  Similarity=0.379  Sum_probs=52.7

Q ss_pred             CCChHHHHHHHHHcCC--C---eEEEEcccCC--CCCCC-CceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEc
Q 017068           14 RDSHKAQIQFALERGI--P---AFVAMLGTRR--LPFPA-FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        14 ~D~se~~vq~A~erg~--~---~~~~v~dae~--LPfpd-~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      .|.+..+++.+.....  .   +.+...+...  +||.+ ..||++ +.....++.. ....+.++.|+|+|+|.+++..
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~  155 (257)
T COG0500          78 VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLHLLP-PAKALRELLRVLKPGGRLVLSD  155 (257)
T ss_pred             EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeehhcCC-HHHHHHHHHHhcCCCcEEEEEe
Confidence            5666677776555431  1   3556666655  89988 599999 7777777666 4489999999999999999876


Q ss_pred             C
Q 017068           86 P   86 (378)
Q Consensus        86 p   86 (378)
                      .
T Consensus       156 ~  156 (257)
T COG0500         156 L  156 (257)
T ss_pred             c
Confidence            5

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=96.62  E-value=0.0028  Score=52.30  Aligned_cols=78  Identities=26%  Similarity=0.434  Sum_probs=53.6

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCCC--CCCCceeEEEecCccccccCC-------hHHHH
Q 017068            4 ENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFTAY-------NATYL   68 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~LP--fpd~SFD~V~cs~~l~hw~~~-------~~~~L   68 (378)
                      ..++++++.     +..++.|+++    +.  ++.+.++|...++  +++++||+|+++--.......       -..++
T Consensus        24 ~~~~gvdi~-----~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~   98 (117)
T PF13659_consen   24 ARVTGVDID-----PEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFL   98 (117)
T ss_dssp             CEEEEEESS-----HHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHH
T ss_pred             CeEEEEEEC-----HHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHH
Confidence            456666666     4677777764    22  4678888887775  899999999997544432111       13789


Q ss_pred             HHHhhcccCCcEEEEEcC
Q 017068           69 IEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        69 ~Ev~RVLkPGG~lvis~p   86 (378)
                      +++.|+|||||.+++..+
T Consensus        99 ~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   99 EAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             HHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHcCCCeEEEEEeC
Confidence            999999999999998654

...

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=96.56  E-value=0.0047  Score=61.64  Aligned_cols=67  Identities=18%  Similarity=0.193  Sum_probs=44.1

Q ss_pred             CChHHHHHHHHHcC----------CCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEE
Q 017068           15 DSHKAQIQFALERG----------IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVI   83 (378)
Q Consensus        15 D~se~~vq~A~erg----------~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvi   83 (378)
                      |+|+.|++.|+++.          ..+.+.++|.+.+   +++||+|+|..+++|+++.. ...++.+.+ +.+||.++ 
T Consensus       173 D~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI-  247 (315)
T PLN02585        173 DISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII-  247 (315)
T ss_pred             ECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE-
Confidence            45568888888763          1245666665443   68999999999999988754 235555554 45655544 


Q ss_pred             EcC
Q 017068           84 SGP   86 (378)
Q Consensus        84 s~p   86 (378)
                      +..
T Consensus       248 s~~  250 (315)
T PLN02585        248 SFA  250 (315)
T ss_pred             EeC
Confidence            443

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=96.55  E-value=0.00073  Score=63.60  Aligned_cols=95  Identities=12%  Similarity=0.029  Sum_probs=57.8

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHH-HHhhcccccc--------------ccccccCCCCC----C
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSV-IYDRGLIGVY--------------HDWCEPFSTYP----R  285 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~-i~eRGlig~~--------------~~w~~~f~typ----r  285 (378)
                      ..|||.|||.|..|.+|.++.-   +|+..|.+ .-+.. ..+.|+....              .-++.-|-.++    .
T Consensus        36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~  112 (213)
T TIGR03840        36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG  112 (213)
T ss_pred             CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence            4999999999999999999877   66777755 44443 3344542111              00111111111    2


Q ss_pred             ccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEE
Q 017068          286 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV  330 (378)
Q Consensus       286 tyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii  330 (378)
                      +||+|-...+|..+.       ...-..++-.|-|.|||||++++
T Consensus       113 ~fD~i~D~~~~~~l~-------~~~R~~~~~~l~~lLkpgG~~ll  150 (213)
T TIGR03840       113 PVDAVYDRAALIALP-------EEMRQRYAAHLLALLPPGARQLL  150 (213)
T ss_pred             CcCEEEechhhccCC-------HHHHHHHHHHHHHHcCCCCeEEE
Confidence            466665555555442       11124578889999999997544

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=96.52  E-value=0.0018  Score=59.97  Aligned_cols=87  Identities=17%  Similarity=0.132  Sum_probs=51.1

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----ccc--c-ccccccccCCCCCCccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLI--G-VYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gli--g-~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      ..|||+|||+|.+++.|....-   .|.-.|.. +.+..+-++    |+-  - ...|-.+.++. ..+||+|.++..+.
T Consensus        80 ~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~I~~~~~~~  155 (212)
T PRK00312         80 DRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA-YAPFDRILVTAAAP  155 (212)
T ss_pred             CEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc-CCCcCEEEEccCch
Confidence            5799999999999887654421   23444443 444444332    331  1 11222222221 26899999875443


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      .               +.-++-+.|+|||.+++.
T Consensus       156 ~---------------~~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        156 E---------------IPRALLEQLKEGGILVAP  174 (212)
T ss_pred             h---------------hhHHHHHhcCCCcEEEEE
Confidence            2               223456899999999886

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=96.51  E-value=0.0058  Score=59.17  Aligned_cols=128  Identities=17%  Similarity=0.259  Sum_probs=81.6

Q ss_pred             CCCCeeEEEecCCcceeeeeeccCC-C-eeEEEeccCCCCcchHHHHhh-----cc---ccc----cccccccCCCCCCc
Q 017068          221 GTPAIRNIMDMNAFFGGFAAALTSD-P-VWVMNVVPARKSSTLSVIYDR-----GL---IGV----YHDWCEPFSTYPRT  286 (378)
Q Consensus       221 ~~~~iR~vlDm~ag~g~faa~L~~~-~-vwvmnv~p~~~~~~l~~i~eR-----Gl---ig~----~~~w~~~f~typrt  286 (378)
                      .......|+|+|||.|..+-+|..+ + +   -|+-++-...+---+.|     ++   |-+    +.+|..++..  .+
T Consensus        41 ~~~~~~~IlDlGaG~G~l~L~la~r~~~a---~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~--~~  115 (248)
T COG4123          41 PVPKKGRILDLGAGNGALGLLLAQRTEKA---KIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF--AS  115 (248)
T ss_pred             ccccCCeEEEecCCcCHHHHHHhccCCCC---cEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc--cc
Confidence            3345889999999999887777766 3 3   12222221111111111     22   333    3335544432  47


Q ss_pred             cccccccCccccccCC---------CCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEE
Q 017068          287 YDLIHVSGIESLIKNP---------GSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       287 yDliH~~~~~~~~~~~---------~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~  353 (378)
                      ||+|-|.--|-.-.+.         ....-.|++++++-=--++|+|||++.+--..+.+.++-+++++++|....
T Consensus       116 fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~  191 (248)
T COG4123         116 FDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKR  191 (248)
T ss_pred             cCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceE
Confidence            9999998665432211         011234677777777889999999999999999999999999999999753

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=96.48  E-value=0.00094  Score=66.37  Aligned_cols=118  Identities=14%  Similarity=0.094  Sum_probs=65.7

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hcccc--c-cccccccCCCCCCccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLIG--V-YHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGlig--~-~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      ..|||.+||+|+|...+...+.   .+.-.|.. .++..+-.    -|+-.  + ..|-. .+|..+.+||+|-++--+.
T Consensus       184 ~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~~~~~~D~Iv~dPPyg  259 (329)
T TIGR01177       184 DRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPLSSESVDAIATDPPYG  259 (329)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCcccCCCCEEEECCCCc
Confidence            3799999999999644433333   44555654 45543222    24432  1 22222 2333347899999974443


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCc
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRW  349 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W  349 (378)
                      .-..............+|-|+-|+|+|||++++--+...  .+++++++--|
T Consensus       260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~--~~~~~~~~~g~  309 (329)
T TIGR01177       260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI--DLESLAEDAFR  309 (329)
T ss_pred             CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC--CHHHHHhhcCc
Confidence            211000000112246789999999999999877644321  44455666666

This family is found exclusively in the Archaea.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=96.47  E-value=0.0011  Score=64.49  Aligned_cols=90  Identities=19%  Similarity=0.383  Sum_probs=68.5

Q ss_pred             CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc--ccccccccccCCCCCCccccccccCcccccc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL--IGVYHDWCEPFSTYPRTYDLIHVSGIESLIK  300 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl--ig~~~~w~~~f~typrtyDliH~~~~~~~~~  300 (378)
                      +..++||+|||-|+-.+.|...=   =.|..++.+ .+.--.-+||+  +. ..+|.+.    +..||+|-|-.++.   
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~kg~~vl~-~~~w~~~----~~~fDvIscLNvLD---  162 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSKKGFTVLD-IDDWQQT----DFKFDVISCLNVLD---  162 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHhCCCeEEe-hhhhhcc----CCceEEEeehhhhh---
Confidence            56789999999999999886521   145777776 67777888999  33 3448753    46799999866554   


Q ss_pred             CCCCCCCCCCc-cceeeeecccccCCCeEEEe
Q 017068          301 NPGSNKNSCSL-VDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       301 ~~~~~~~~c~~-~~~l~EmDRiLRPgG~~ii~  331 (378)
                             ||.- ..+|-+|-+.|+|+|.+|+.
T Consensus       163 -------Rc~~P~~LL~~i~~~l~p~G~lilA  187 (265)
T PF05219_consen  163 -------RCDRPLTLLRDIRRALKPNGRLILA  187 (265)
T ss_pred             -------ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence                   6653 46888999999999999995

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=96.47  E-value=0.011  Score=56.58  Aligned_cols=76  Identities=11%  Similarity=0.072  Sum_probs=57.2

Q ss_pred             CCeEEEecCCCCChHHHHHHHHH-----------------cCCCeEEEEcccCCCCCC---CCceeEEEecCccccccCC
Q 017068            4 ENILTLSFAPRDSHKAQIQFALE-----------------RGIPAFVAMLGTRRLPFP---AFSFDIVHCSRCLIPFTAY   63 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~e-----------------rg~~~~~~v~dae~LPfp---d~SFD~V~cs~~l~hw~~~   63 (378)
                      .+|++++++|     ..|+.+.+                 ++..+.+.++|.-.++.+   -+.||+|.=..++++++..
T Consensus        66 ~~V~GvDlS~-----~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~  140 (226)
T PRK13256         66 VKVIGIELSE-----KAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPND  140 (226)
T ss_pred             CcEEEEecCH-----HHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHH
Confidence            4577777775     45555433                 245678889998888743   2689999888888888765


Q ss_pred             h-HHHHHHHhhcccCCcEEEEE
Q 017068           64 N-ATYLIEVDRLLRPGGYLVIS   84 (378)
Q Consensus        64 ~-~~~L~Ev~RVLkPGG~lvis   84 (378)
                      . .+..+.+.++|+|||.+++-
T Consensus       141 ~R~~Y~~~l~~lL~pgg~llll  162 (226)
T PRK13256        141 LRTNYAKMMLEVCSNNTQILLL  162 (226)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEE
Confidence            4 58999999999999998864

>PRK14968 putative methyltransferase; Provisional

Probab=96.46  E-value=0.021  Score=50.79  Aligned_cols=71  Identities=24%  Similarity=0.331  Sum_probs=46.9

Q ss_pred             CChHHHHHHHHHc----CCC---eEEEEcccCCCCCCCCceeEEEecCccccccC--------------------ChHHH
Q 017068           15 DSHKAQIQFALER----GIP---AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA--------------------YNATY   67 (378)
Q Consensus        15 D~se~~vq~A~er----g~~---~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~--------------------~~~~~   67 (378)
                      |.|+.+++.|+++    +..   +.+...|... ++++++||+|+++.-+.+...                    .-..+
T Consensus        52 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (188)
T PRK14968         52 DINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRF  130 (188)
T ss_pred             ECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHH
Confidence            4456777777554    332   5566666544 567779999998754432110                    01257


Q ss_pred             HHHHhhcccCCcEEEEEcC
Q 017068           68 LIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        68 L~Ev~RVLkPGG~lvis~p   86 (378)
                      ++++.++|||||.+++..+
T Consensus       131 i~~~~~~Lk~gG~~~~~~~  149 (188)
T PRK14968        131 LDEVGRYLKPGGRILLLQS  149 (188)
T ss_pred             HHHHHHhcCCCeEEEEEEc
Confidence            8999999999999988655

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.45  E-value=0.006  Score=56.98  Aligned_cols=69  Identities=14%  Similarity=0.033  Sum_probs=50.4

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      .|+++++.     +.+++.|+++    +. ++.+..+|+...+.+++.||+|++.....+       ...++.+.|||||
T Consensus       103 ~V~~vE~~-----~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~LkpgG  170 (212)
T PRK13942        103 KVVTIERI-----PELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGPD-------IPKPLIEQLKDGG  170 (212)
T ss_pred             EEEEEeCC-----HHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCccc-------chHHHHHhhCCCc
Confidence            45666655     5778777765    44 367888888777777899999998765533       2356778999999


Q ss_pred             EEEEEc
Q 017068           80 YLVISG   85 (378)
Q Consensus        80 ~lvis~   85 (378)
                      .+++..
T Consensus       171 ~lvi~~  176 (212)
T PRK13942        171 IMVIPV  176 (212)
T ss_pred             EEEEEE
Confidence            999853

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=96.44  E-value=0.00014  Score=60.21  Aligned_cols=99  Identities=19%  Similarity=0.244  Sum_probs=56.2

Q ss_pred             EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hcc-------ccccccccccCCCCCCccccccccC
Q 017068          227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGL-------IGVYHDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGl-------ig~~~~w~~~f~typrtyDliH~~~  294 (378)
                      .|||+|||.|.|+.++....  .-++.-.|-. ..+.++-.    .|+       .|-+.+..+.++  +..||+|-++-
T Consensus         3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~--~~~~D~Iv~np   78 (117)
T PF13659_consen    3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP--DGKFDLIVTNP   78 (117)
T ss_dssp             EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT--TT-EEEEEE--
T ss_pred             EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc--CceeEEEEECC
Confidence            69999999999999887664  2255555544 33332221    111       121222222232  38899999988


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEE
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV  330 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii  330 (378)
                      -|........... -....++-++.|+|||||.+++
T Consensus        79 P~~~~~~~~~~~~-~~~~~~~~~~~~~L~~gG~~~~  113 (117)
T PF13659_consen   79 PYGPRSGDKAALR-RLYSRFLEAAARLLKPGGVLVF  113 (117)
T ss_dssp             STTSBTT----GG-CHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCccccccchhhH-HHHHHHHHHHHHHcCCCeEEEE
Confidence            7764421111111 1335678899999999999976

...

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=96.41  E-value=0.02  Score=53.53  Aligned_cols=76  Identities=20%  Similarity=0.375  Sum_probs=50.3

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEecCcccc------ccCC----------
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIP------FTAY----------   63 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~h------w~~~----------   63 (378)
                      .|+++++     ++.+++.|+++    +.. +.+..+|... ++++++||+|+|+--...      +...          
T Consensus       113 ~v~~iD~-----~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~  186 (251)
T TIGR03534       113 RVTAVDI-----SPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLAL  186 (251)
T ss_pred             EEEEEEC-----CHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHH
Confidence            4555554     46777777654    444 5677777755 678899999998532211      1100          


Q ss_pred             ---------hHHHHHHHhhcccCCcEEEEEcC
Q 017068           64 ---------NATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        64 ---------~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                               -...+.++.|+|+|||.+++...
T Consensus       187 ~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~  218 (251)
T TIGR03534       187 FGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG  218 (251)
T ss_pred             cCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence                     02568899999999999998653

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=96.41  E-value=0.0066  Score=62.87  Aligned_cols=103  Identities=18%  Similarity=0.245  Sum_probs=58.5

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHh----hccc--c-ccccccccCCCCCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYD----RGLI--G-VYHDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~e----RGli--g-~~~~w~~~f~typrtyDliH~~~  294 (378)
                      .+|||+|||.|+++.++...   +-   .|+..|.. ..++.+-+    .|+-  - +..|..+....++.+||+|-++-
T Consensus       252 ~~VLDlgaG~G~~t~~la~~~~~~~---~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~  328 (444)
T PRK14902        252 DTVLDACAAPGGKTTHIAELLKNTG---KVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDA  328 (444)
T ss_pred             CEEEEeCCCCCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcC
Confidence            57999999999999887643   22   34555654 55554433    2431  1 22344433233458899987653


Q ss_pred             ccccc----cCCCCCC--CCCCc-------cceeeeecccccCCCeEEEe
Q 017068          295 IESLI----KNPGSNK--NSCSL-------VDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       295 ~~~~~----~~~~~~~--~~c~~-------~~~l~EmDRiLRPgG~~ii~  331 (378)
                      -.+..    ..|+..-  ....+       ..+|-+.=|+|+|||.+|++
T Consensus       329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys  378 (444)
T PRK14902        329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS  378 (444)
T ss_pred             CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            21110    0011000  00011       24788889999999999986

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=96.41  E-value=0.0053  Score=61.97  Aligned_cols=80  Identities=21%  Similarity=0.275  Sum_probs=57.2

Q ss_pred             EEEecCCCCChHHHHHHHHHc----CCC-eE-EEEcccCCCCCCCCceeEEEecC-----ccccccC---ChHHHHHHHh
Q 017068            7 LTLSFAPRDSHKAQIQFALER----GIP-AF-VAMLGTRRLPFPAFSFDIVHCSR-----CLIPFTA---YNATYLIEVD   72 (378)
Q Consensus         7 ~~ms~ap~D~se~~vq~A~er----g~~-~~-~~v~dae~LPfpd~SFD~V~cs~-----~l~hw~~---~~~~~L~Ev~   72 (378)
                      .+...-..|+.+.|++-|+.+    ++. .. +.+.|+.++||++++||+|.|--     +-..-..   --..++.++.
T Consensus       218 ~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~  297 (347)
T COG1041         218 MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESAS  297 (347)
T ss_pred             cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHH
Confidence            344455668889999999886    322 22 34459999999999999998731     0001011   1137899999


Q ss_pred             hcccCCcEEEEEcC
Q 017068           73 RLLRPGGYLVISGP   86 (378)
Q Consensus        73 RVLkPGG~lvis~p   86 (378)
                      +|||+||++++..|
T Consensus       298 evLk~gG~~vf~~p  311 (347)
T COG1041         298 EVLKPGGRIVFAAP  311 (347)
T ss_pred             HHhhcCcEEEEecC
Confidence            99999999999887

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=96.40  E-value=0.0069  Score=55.66  Aligned_cols=73  Identities=12%  Similarity=0.149  Sum_probs=49.1

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCC-CCCCCCceeEEEecCccccccCChHHHHHHHhhcccC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP   77 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkP   77 (378)
                      .|+++++.     +.+++.|+++    ++  .+.+..+|+.. ++..++.||.|++..   ...+.. .+++++.|+|||
T Consensus        67 ~v~avD~~-----~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~---~~~~~~-~~l~~~~~~Lkp  137 (198)
T PRK00377         67 KVYAVDKD-----EKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG---GSEKLK-EIISASWEIIKK  137 (198)
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC---CcccHH-HHHHHHHHHcCC
Confidence            35666665     4677766554    42  35566667654 444457899999843   222333 899999999999


Q ss_pred             CcEEEEEcC
Q 017068           78 GGYLVISGP   86 (378)
Q Consensus        78 GG~lvis~p   86 (378)
                      ||++++...
T Consensus       138 gG~lv~~~~  146 (198)
T PRK00377        138 GGRIVIDAI  146 (198)
T ss_pred             CcEEEEEee
Confidence            999998554

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=96.36  E-value=0.0088  Score=61.65  Aligned_cols=82  Identities=18%  Similarity=0.148  Sum_probs=52.1

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCCeEE--EEcccCCCCC--CCCceeEEEe----c-Cc-cccccC-----C--
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIPAFV--AMLGTRRLPF--PAFSFDIVHC----S-RC-LIPFTA-----Y--   63 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~~~~--~v~dae~LPf--pd~SFD~V~c----s-~~-l~hw~~-----~--   63 (378)
                      .|+++++.     +.+++.++++    |+.+.+  ..+|+..+++  ++++||.|++    + .. +.+-++     .  
T Consensus       264 ~v~a~D~~-----~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~  338 (426)
T TIGR00563       264 QVVALDIH-----EHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPR  338 (426)
T ss_pred             eEEEEeCC-----HHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHH
Confidence            45666555     5666666554    655333  4556655554  6789999984    2 22 222222     1  


Q ss_pred             --------hHHHHHHHhhcccCCcEEEEEcCCCCCC
Q 017068           64 --------NATYLIEVDRLLRPGGYLVISGPPVQWP   91 (378)
Q Consensus        64 --------~~~~L~Ev~RVLkPGG~lvis~pp~~~~   91 (378)
                              ...+|.++.|+|||||++++++-.....
T Consensus       339 ~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~  374 (426)
T TIGR00563       339 DIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE  374 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence                    2379999999999999999987644433

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=96.32  E-value=0.015  Score=59.97  Aligned_cols=81  Identities=22%  Similarity=0.314  Sum_probs=53.3

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCCeEEEEcccCCCC--CCCCceeEEE----ecCcc-------ccccCC----
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP--FPAFSFDIVH----CSRCL-------IPFTAY----   63 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~~~~~v~dae~LP--fpd~SFD~V~----cs~~l-------~hw~~~----   63 (378)
                      .|+++++.     +.+++.++++    |+.+.+..+|+..++  +++++||.|+    |+..-       ..|...    
T Consensus       270 ~v~a~D~s-----~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l  344 (427)
T PRK10901        270 QVVALDID-----AQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDI  344 (427)
T ss_pred             EEEEEeCC-----HHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHH
Confidence            45555555     5777666554    566677788887765  4578899998    43211       112111    


Q ss_pred             ------hHHHHHHHhhcccCCcEEEEEcCCCCC
Q 017068           64 ------NATYLIEVDRLLRPGGYLVISGPPVQW   90 (378)
Q Consensus        64 ------~~~~L~Ev~RVLkPGG~lvis~pp~~~   90 (378)
                            ...+|.++.++|||||++++++-....
T Consensus       345 ~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~  377 (427)
T PRK10901        345 AALAALQSEILDALWPLLKPGGTLLYATCSILP  377 (427)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence                  126899999999999999998753333

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.28  E-value=0.0026  Score=63.28  Aligned_cols=105  Identities=17%  Similarity=0.233  Sum_probs=70.7

Q ss_pred             hhhhcCCCCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCCcchHHHHhhcccccccc-cc-----ccCCCCCCccc
Q 017068          216 LNVKLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLSVIYDRGLIGVYHD-WC-----EPFSTYPRTYD  288 (378)
Q Consensus       216 ~~~~~~~~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~~~l~~i~eRGlig~~~~-w~-----~~f~typrtyD  288 (378)
                      +.+.+..=+=|.|||+|||.|-|.=.|+.+ +-.|+-+-|..- ..+|+-+-+-++|.-.. ..     |.+|. ..+||
T Consensus       107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l-f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FD  184 (315)
T PF08003_consen  107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL-FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFD  184 (315)
T ss_pred             HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH-HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcC
Confidence            333333334579999999999998777755 445555555332 44566665666653211 12     22455 68999


Q ss_pred             cccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          289 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       289 liH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      +|-|.+++-+..         +--..|.++-..|||||-+|+.
T Consensus       185 tVF~MGVLYHrr---------~Pl~~L~~Lk~~L~~gGeLvLE  218 (315)
T PF08003_consen  185 TVFSMGVLYHRR---------SPLDHLKQLKDSLRPGGELVLE  218 (315)
T ss_pred             EEEEeeehhccC---------CHHHHHHHHHHhhCCCCEEEEE
Confidence            999999987543         3357888999999999999975

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=96.26  E-value=0.012  Score=53.24  Aligned_cols=71  Identities=14%  Similarity=0.085  Sum_probs=48.0

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      .|++++++     +.+++.|+++    ++ .+.+..+++. .+++ ++||+|++.....+   .. ..++++.++|+|||
T Consensus        57 ~v~~vD~s-----~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~~~~---~~-~~l~~~~~~Lk~gG  125 (187)
T PRK08287         57 QVTAIERN-----PDALRLIKENRQRFGCGNIDIIPGEAP-IELP-GKADAIFIGGSGGN---LT-AIIDWSLAHLHPGG  125 (187)
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHhCCCCeEEEecCch-hhcC-cCCCEEEECCCccC---HH-HHHHHHHHhcCCCe
Confidence            46666666     4667776653    33 3455556653 3454 68999998765432   23 78899999999999


Q ss_pred             EEEEEcC
Q 017068           80 YLVISGP   86 (378)
Q Consensus        80 ~lvis~p   86 (378)
                      ++++...
T Consensus       126 ~lv~~~~  132 (187)
T PRK08287        126 RLVLTFI  132 (187)
T ss_pred             EEEEEEe
Confidence            9998653

>TIGR00438 rrmJ cell division protein FtsJ

Probab=96.25  E-value=0.015  Score=52.76  Aligned_cols=71  Identities=11%  Similarity=0.014  Sum_probs=46.2

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCC--------CCCCceeEEEecCccc---cccC-C------hHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP--------FPAFSFDIVHCSRCLI---PFTA-Y------NAT   66 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LP--------fpd~SFD~V~cs~~l~---hw~~-~------~~~   66 (378)
                      .|++++++|..           ....+.+..+|....+        +++++||+|+|..+..   +|.. .      ...
T Consensus        59 ~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~  127 (188)
T TIGR00438        59 RVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVEL  127 (188)
T ss_pred             eEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHH
Confidence            47888887632           1123455566665543        6788999999864321   1211 1      137


Q ss_pred             HHHHHhhcccCCcEEEEEcC
Q 017068           67 YLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        67 ~L~Ev~RVLkPGG~lvis~p   86 (378)
                      ++.++.++|+|||++++...
T Consensus       128 ~l~~~~~~LkpgG~lvi~~~  147 (188)
T TIGR00438       128 ALDIAKEVLKPKGNFVVKVF  147 (188)
T ss_pred             HHHHHHHHccCCCEEEEEEc
Confidence            89999999999999999653

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=96.24  E-value=0.014  Score=60.32  Aligned_cols=75  Identities=24%  Similarity=0.250  Sum_probs=50.6

Q ss_pred             CChHHHHHHHHHc----CCC-eEEEEcccCCCC----CCCCceeEEEe----cC--ccccccCC---------------h
Q 017068           15 DSHKAQIQFALER----GIP-AFVAMLGTRRLP----FPAFSFDIVHC----SR--CLIPFTAY---------------N   64 (378)
Q Consensus        15 D~se~~vq~A~er----g~~-~~~~v~dae~LP----fpd~SFD~V~c----s~--~l~hw~~~---------------~   64 (378)
                      |.++.+++.++++    |+. +.+..+|+..++    +.+++||.|++    +-  ++.+-++.               .
T Consensus       284 D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q  363 (434)
T PRK14901        284 DRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQ  363 (434)
T ss_pred             cCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHH
Confidence            4456777666554    553 567778887776    66789999985    21  22222220               2


Q ss_pred             HHHHHHHhhcccCCcEEEEEcCCCC
Q 017068           65 ATYLIEVDRLLRPGGYLVISGPPVQ   89 (378)
Q Consensus        65 ~~~L~Ev~RVLkPGG~lvis~pp~~   89 (378)
                      ...|.++.++|||||++++++-..+
T Consensus       364 ~~iL~~a~~~lkpgG~lvystcsi~  388 (434)
T PRK14901        364 AELLESLAPLLKPGGTLVYATCTLH  388 (434)
T ss_pred             HHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            3779999999999999998875443

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=96.13  E-value=0.0067  Score=62.91  Aligned_cols=79  Identities=20%  Similarity=0.230  Sum_probs=51.7

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEe----cCc--cc-----cccC------
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHC----SRC--LI-----PFTA------   62 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~c----s~~--l~-----hw~~------   62 (378)
                      .|+++++.     +.+++.|+++    |+. +.+..+|+..++ ++++||+|++    +-.  +.     .|..      
T Consensus       277 ~V~avD~s-----~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~  350 (445)
T PRK14904        277 QITAVDRY-----PQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLA  350 (445)
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHH
Confidence            35555554     5777666554    554 567778887765 6789999985    211  10     1111      


Q ss_pred             ----ChHHHHHHHhhcccCCcEEEEEcCCCC
Q 017068           63 ----YNATYLIEVDRLLRPGGYLVISGPPVQ   89 (378)
Q Consensus        63 ----~~~~~L~Ev~RVLkPGG~lvis~pp~~   89 (378)
                          ....+|.++.++|||||++++++-...
T Consensus       351 ~l~~~q~~iL~~a~~~lkpgG~lvystcs~~  381 (445)
T PRK14904        351 ELVGLQAELLDHAASLLKPGGVLVYATCSIE  381 (445)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence                122589999999999999999876443

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=96.11  E-value=0.0062  Score=63.72  Aligned_cols=80  Identities=28%  Similarity=0.272  Sum_probs=57.8

Q ss_pred             CCCeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChH---------HHHHHHhh
Q 017068            3 SENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNA---------TYLIEVDR   73 (378)
Q Consensus         3 ~~~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~---------~~L~Ev~R   73 (378)
                      .++|+.+++++.++...++..|+++ .-..+..+|...+.|+|+|||+|+---.+.+...++.         ..+.|+.|
T Consensus        71 ~~dI~~iD~S~V~V~~m~~~~~~~~-~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsr  149 (482)
T KOG2352|consen   71 FEDITNIDSSSVVVAAMQVRNAKER-PEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSR  149 (482)
T ss_pred             CCCceeccccHHHHHHHHhccccCC-cceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHH
Confidence            4678888777765555555444332 2245677899999999999999997777766544332         45689999


Q ss_pred             cccCCcEEEE
Q 017068           74 LLRPGGYLVI   83 (378)
Q Consensus        74 VLkPGG~lvi   83 (378)
                      ||+|||+++.
T Consensus       150 vl~~~gk~~s  159 (482)
T KOG2352|consen  150 VLAPGGKYIS  159 (482)
T ss_pred             HhccCCEEEE
Confidence            9999998764

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=96.01  E-value=0.0052  Score=59.85  Aligned_cols=99  Identities=16%  Similarity=0.197  Sum_probs=63.9

Q ss_pred             CCeeEEEecCCcceeeeeeccCCCeeE------EEeccCCC-CcchHHHHhhccc-cccc----cccc----cCCCCC-C
Q 017068          223 PAIRNIMDMNAFFGGFAAALTSDPVWV------MNVVPARK-SSTLSVIYDRGLI-GVYH----DWCE----PFSTYP-R  285 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~faa~L~~~~vwv------mnv~p~~~-~~~l~~i~eRGli-g~~~----~w~~----~f~typ-r  285 (378)
                      +.-=.+|||+||+|=.|=.+++. |-.      =+|.-.|- +.||.+...|-.- +..-    -|-+    .+| || .
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-Fdd~  176 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-FDDD  176 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-CCCC
Confidence            34467999999999655444422 111      23444554 4888776666531 1222    2433    366 45 8


Q ss_pred             ccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          286 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       286 tyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      +||+.-.+.-.-++.         .+...|-|+-|||+|||-|.+-+
T Consensus       177 s~D~yTiafGIRN~t---------h~~k~l~EAYRVLKpGGrf~cLe  214 (296)
T KOG1540|consen  177 SFDAYTIAFGIRNVT---------HIQKALREAYRVLKPGGRFSCLE  214 (296)
T ss_pred             cceeEEEecceecCC---------CHHHHHHHHHHhcCCCcEEEEEE
Confidence            999987765555444         35789999999999999998765

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=95.98  E-value=0.014  Score=55.96  Aligned_cols=72  Identities=18%  Similarity=0.197  Sum_probs=52.1

Q ss_pred             CCChHHHHHHHHHcCCCeEEEEcc-cCCCCCCCCceeEEEecCcccccc--------CCh---HHHHHHHhhcccCCcEE
Q 017068           14 RDSHKAQIQFALERGIPAFVAMLG-TRRLPFPAFSFDIVHCSRCLIPFT--------AYN---ATYLIEVDRLLRPGGYL   81 (378)
Q Consensus        14 ~D~se~~vq~A~erg~~~~~~v~d-ae~LPfpd~SFD~V~cs~~l~hw~--------~~~---~~~L~Ev~RVLkPGG~l   81 (378)
                      .|+|..|++.|.++-+...+..+| .+-|||+.++||.|++..++ +|.        ++.   ..++.-++.+|++|+..
T Consensus        78 vDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~ra  156 (270)
T KOG1541|consen   78 VDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARA  156 (270)
T ss_pred             ecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhccCcee
Confidence            356669999999875554444444 38999999999999977654 663        111   13566789999999999


Q ss_pred             EEEcC
Q 017068           82 VISGP   86 (378)
Q Consensus        82 vis~p   86 (378)
                      ++-.-
T Consensus       157 V~QfY  161 (270)
T KOG1541|consen  157 VLQFY  161 (270)
T ss_pred             EEEec
Confidence            98654

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=95.90  E-value=0.02  Score=53.30  Aligned_cols=68  Identities=16%  Similarity=0.126  Sum_probs=48.8

Q ss_pred             eEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068            6 ILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY   80 (378)
Q Consensus         6 v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~   80 (378)
                      |+++++.     +.+++.|+++    ++ ++.+..+|+.......+.||+|++..+..       ....++.+.|+|||+
T Consensus       105 V~~vD~~-----~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~-------~~~~~~~~~L~~gG~  172 (215)
T TIGR00080       105 VVSIERI-----PELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGP-------KIPEALIDQLKEGGI  172 (215)
T ss_pred             EEEEeCC-----HHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCCcc-------cccHHHHHhcCcCcE
Confidence            6666665     5777777664    44 36677788766555567899999876543       334678899999999


Q ss_pred             EEEEc
Q 017068           81 LVISG   85 (378)
Q Consensus        81 lvis~   85 (378)
                      +++..
T Consensus       173 lv~~~  177 (215)
T TIGR00080       173 LVMPV  177 (215)
T ss_pred             EEEEE
Confidence            99864

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.89  E-value=0.013  Score=55.19  Aligned_cols=64  Identities=22%  Similarity=0.190  Sum_probs=51.5

Q ss_pred             HHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCC--cEEEEEcC
Q 017068           19 AQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPG--GYLVISGP   86 (378)
Q Consensus        19 ~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPG--G~lvis~p   86 (378)
                      ..++.|++ .-.+.+..+|.. -|+|.  +|+++.++++|+|++.. ..+|+.+.+.|+||  |+++|...
T Consensus       134 ~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~  200 (241)
T PF00891_consen  134 EVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM  200 (241)
T ss_dssp             HHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred             hhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence            55666666 345677778876 67887  99999999999999876 68999999999999  99999765

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=95.87  E-value=0.0061  Score=58.25  Aligned_cols=70  Identities=23%  Similarity=0.261  Sum_probs=43.6

Q ss_pred             eEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEc
Q 017068            6 ILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus         6 v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      |+++++.     +.+++.|+++.....+  .+...++..+.+||+|+|+...    +.-...+.++.|+|||||++++++
T Consensus       145 v~giDis-----~~~l~~A~~n~~~~~~--~~~~~~~~~~~~fD~Vvani~~----~~~~~l~~~~~~~LkpgG~lilsg  213 (250)
T PRK00517        145 VLAVDID-----PQAVEAARENAELNGV--ELNVYLPQGDLKADVIVANILA----NPLLELAPDLARLLKPGGRLILSG  213 (250)
T ss_pred             EEEEECC-----HHHHHHHHHHHHHcCC--CceEEEccCCCCcCEEEEcCcH----HHHHHHHHHHHHhcCCCcEEEEEE
Confidence            5555554     6888888775211000  0111123333489999986432    112377899999999999999987


Q ss_pred             C
Q 017068           86 P   86 (378)
Q Consensus        86 p   86 (378)
                      .
T Consensus       214 i  214 (250)
T PRK00517        214 I  214 (250)
T ss_pred             C
Confidence            5

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=95.85  E-value=0.015  Score=56.14  Aligned_cols=72  Identities=24%  Similarity=0.258  Sum_probs=51.3

Q ss_pred             CChHHHHHHHHHcCC------CeEEEEcccC--CCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEc
Q 017068           15 DSHKAQIQFALERGI------PAFVAMLGTR--RLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        15 D~se~~vq~A~erg~------~~~~~v~dae--~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      |.|...|++-+++..      .+.+..++..  .-|.+.+++|+|++-+++.-.+... ..++.+++|+|||||.+++..
T Consensus       104 Dfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD  183 (264)
T KOG2361|consen  104 DFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD  183 (264)
T ss_pred             CCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence            444567777776521      1222233333  4468899999999999887765543 689999999999999999975


Q ss_pred             C
Q 017068           86 P   86 (378)
Q Consensus        86 p   86 (378)
                      -
T Consensus       184 Y  184 (264)
T KOG2361|consen  184 Y  184 (264)
T ss_pred             c
Confidence            4

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=95.81  E-value=0.0054  Score=63.20  Aligned_cols=103  Identities=22%  Similarity=0.206  Sum_probs=56.1

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHH---hh-cccc----ccccccccCCC--CCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY---DR-GLIG----VYHDWCEPFST--YPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~---eR-Glig----~~~~w~~~f~t--yprtyDliH~~~  294 (378)
                      .+|||||||.|+++.++...-- .-.|+..|.+ ..+..+-   +| |+--    +-.|... .+.  .+.+||.|.++-
T Consensus       240 ~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~-~~~~~~~~~fD~VllDa  317 (426)
T TIGR00563       240 ETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRG-PSQWAENEQFDRILLDA  317 (426)
T ss_pred             CeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccc-ccccccccccCEEEEcC
Confidence            5899999999999988764310 1134555654 5554433   32 4310    1112211 111  236899998642


Q ss_pred             ccc---cc-cCCCCCCCCCC----------ccceeeeecccccCCCeEEEe
Q 017068          295 IES---LI-KNPGSNKNSCS----------LVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       295 ~~~---~~-~~~~~~~~~c~----------~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      -.|   .+ ..|+.. ++=.          -..+|-++=|+|||||.+|++
T Consensus       318 PcSg~G~~~~~p~~~-~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys  367 (426)
T TIGR00563       318 PCSATGVIRRHPDIK-WLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA  367 (426)
T ss_pred             CCCCCcccccCcchh-hcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            111   11 101100 0000          136888999999999999998

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=95.80  E-value=0.016  Score=56.55  Aligned_cols=69  Identities=19%  Similarity=0.327  Sum_probs=52.2

Q ss_pred             cCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068           11 FAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS   84 (378)
Q Consensus        11 ~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis   84 (378)
                      +..++.|..|...-++||..+.    +.....-.+..||+|.|..++=.-.++. ..|+++++.|+|+|.++++
T Consensus       119 v~aTE~S~~Mr~rL~~kg~~vl----~~~~w~~~~~~fDvIscLNvLDRc~~P~-~LL~~i~~~l~p~G~lilA  187 (265)
T PF05219_consen  119 VYATEASPPMRWRLSKKGFTVL----DIDDWQQTDFKFDVISCLNVLDRCDRPL-TLLRDIRRALKPNGRLILA  187 (265)
T ss_pred             EEeecCCHHHHHHHHhCCCeEE----ehhhhhccCCceEEEeehhhhhccCCHH-HHHHHHHHHhCCCCEEEEE
Confidence            3456778899988889987543    3333333467899999998875544444 9999999999999999986

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=95.78  E-value=0.038  Score=53.08  Aligned_cols=138  Identities=20%  Similarity=0.218  Sum_probs=85.9

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcccc--ccccccccCCCCCCccccccccCcc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIG--VYHDWCEPFSTYPRTYDLIHVSGIE  296 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig--~~~~w~~~f~typrtyDliH~~~~~  296 (378)
                      +..+.=+-|||+|||+|--|+.|.+..-   -.+=.|.+ .+|.++.+|-+-|  ++.|--|.+|+-|-|||=+-.-.- 
T Consensus        46 lp~~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISA-  121 (270)
T KOG1541|consen   46 LPGPKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISA-  121 (270)
T ss_pred             CCCCCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeee-
Confidence            5555788999999999999999987763   12334544 9999999977765  566777999988999996543221 


Q ss_pred             ccccCCCCCCCCCCcc-----------ceeeeecccccCCCeEEEe---CCHHHHHHHHHHHhcCCceEE-EecCCCCCC
Q 017068          297 SLIKNPGSNKNSCSLV-----------DLMVEMDRMLRPEGTVVVR---DSPEVIDKVSRIANTVRWTAA-VHDKEPGSN  361 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~-----------~~l~EmDRiLRPgG~~ii~---d~~~~~~~~~~~~~~l~W~~~-~~~~~~~~~  361 (378)
                        ..      +-||-.           ...--.=..|.+|+-.+++   ++.+.++.|..-|..--..-. ++|.-....
T Consensus       122 --vQ------WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k  193 (270)
T KOG1541|consen  122 --VQ------WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTK  193 (270)
T ss_pred             --ee------eecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeecccccc
Confidence              11      333321           1222345778899999988   444555666554443333322 234322333


Q ss_pred             CCeEEEEE
Q 017068          362 GREKILVA  369 (378)
Q Consensus       362 ~~e~~l~~  369 (378)
                      ++.-+||-
T Consensus       194 ~kK~yLVL  201 (270)
T KOG1541|consen  194 NKKYYLVL  201 (270)
T ss_pred             cceeEEEE
Confidence            44444444

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=95.76  E-value=0.03  Score=55.23  Aligned_cols=75  Identities=19%  Similarity=0.306  Sum_probs=54.7

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhccc
Q 017068            4 ENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLR   76 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLk   76 (378)
                      -+|++++++     ++|.+.|++|    |..  +.+...|   .+..++.||-|++.-+++|+.... ..+++-+.++|+
T Consensus        96 v~V~GvTlS-----~~Q~~~~~~r~~~~gl~~~v~v~l~d---~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~  167 (283)
T COG2230          96 VTVVGVTLS-----EEQLAYAEKRIAARGLEDNVEVRLQD---YRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLK  167 (283)
T ss_pred             CEEEEeeCC-----HHHHHHHHHHHHHcCCCcccEEEecc---ccccccccceeeehhhHHHhCcccHHHHHHHHHhhcC
Confidence            456666655     6888887774    655  3343333   343445599999999999997732 599999999999


Q ss_pred             CCcEEEEEcC
Q 017068           77 PGGYLVISGP   86 (378)
Q Consensus        77 PGG~lvis~p   86 (378)
                      |||.+++.+-
T Consensus       168 ~~G~~llh~I  177 (283)
T COG2230         168 PGGRMLLHSI  177 (283)
T ss_pred             CCceEEEEEe
Confidence            9999998654

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=95.72  E-value=0.0084  Score=47.07  Aligned_cols=93  Identities=22%  Similarity=0.266  Sum_probs=56.4

Q ss_pred             EEecCCccee--eeeeccCCCeeEEEeccCCCC-cchHHHHhhc-------cccccccccc-cCCCCC-CccccccccCc
Q 017068          228 IMDMNAFFGG--FAAALTSDPVWVMNVVPARKS-STLSVIYDRG-------LIGVYHDWCE-PFSTYP-RTYDLIHVSGI  295 (378)
Q Consensus       228 vlDm~ag~g~--faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG-------lig~~~~w~~-~f~typ-rtyDliH~~~~  295 (378)
                      ++|+|||.|.  +.+.+......+..   .+.. .++.....+.       +-....+... .++.-. .+||++ +...
T Consensus        52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~  127 (257)
T COG0500          52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL  127 (257)
T ss_pred             eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence            9999999998  45555554433333   3433 3343322222       1223333333 133322 389999 7666


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      ...+.      .   ...++-|+-|+|+|+|.+++...
T Consensus       128 ~~~~~------~---~~~~~~~~~~~l~~~g~~~~~~~  156 (257)
T COG0500         128 VLHLL------P---PAKALRELLRVLKPGGRLVLSDL  156 (257)
T ss_pred             ehhcC------C---HHHHHHHHHHhcCCCcEEEEEec
Confidence            55443      1   57899999999999999999864

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=95.70  E-value=0.026  Score=50.72  Aligned_cols=70  Identities=19%  Similarity=0.279  Sum_probs=46.2

Q ss_pred             CChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEecCccccccCC-----hHHHHHHHhhcccCCcEEEEE
Q 017068           15 DSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-----NATYLIEVDRLLRPGGYLVIS   84 (378)
Q Consensus        15 D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~-----~~~~L~Ev~RVLkPGG~lvis   84 (378)
                      |+++.+++.|++.    ++. +.+...|... ++++++||+|+|+-=+ |....     ....+++..+.|||||.|++.
T Consensus        62 Di~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~-~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv  139 (170)
T PF05175_consen   62 DINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPF-HAGGDDGLDLLRDFIEQARRYLKPGGRLFLV  139 (170)
T ss_dssp             ESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---S-BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccch-hcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence            4456778887763    555 6666666532 4558999999997432 22222     247899999999999999765


Q ss_pred             cC
Q 017068           85 GP   86 (378)
Q Consensus        85 ~p   86 (378)
                      ..
T Consensus       140 ~~  141 (170)
T PF05175_consen  140 IN  141 (170)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=95.67  E-value=0.029  Score=58.22  Aligned_cols=81  Identities=21%  Similarity=0.316  Sum_probs=53.4

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCC-CCCCceeEEEecC-c--cccccC-------------
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLP-FPAFSFDIVHCSR-C--LIPFTA-------------   62 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LP-fpd~SFD~V~cs~-~--l~hw~~-------------   62 (378)
                      .|+++++.     +.+++.++++    |+. +.+..+|+..++ +.+++||.|++.- |  +-.+..             
T Consensus       264 ~V~a~Dis-----~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~  338 (431)
T PRK14903        264 KILAVDIS-----REKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDF  338 (431)
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHH
Confidence            45666555     5777766654    554 567788888777 6678999998520 1  111111             


Q ss_pred             -----ChHHHHHHHhhcccCCcEEEEEcCCCCC
Q 017068           63 -----YNATYLIEVDRLLRPGGYLVISGPPVQW   90 (378)
Q Consensus        63 -----~~~~~L~Ev~RVLkPGG~lvis~pp~~~   90 (378)
                           ...+.|.++.+.|||||++++++-....
T Consensus       339 ~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~  371 (431)
T PRK14903        339 KKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK  371 (431)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence                 1135689999999999999998764433

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=95.64  E-value=0.028  Score=57.54  Aligned_cols=71  Identities=15%  Similarity=0.095  Sum_probs=47.6

Q ss_pred             CCChHHHHHHHHHc----CC----CeEEEEcccCCCCCCCCceeEEEecCccccc---cCC-hHHHHHHHhhcccCCcEE
Q 017068           14 RDSHKAQIQFALER----GI----PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF---TAY-NATYLIEVDRLLRPGGYL   81 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~----~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw---~~~-~~~~L~Ev~RVLkPGG~l   81 (378)
                      .|.|+.+++.|+++    +.    .+.+...|... .+++++||+|+|+--++.-   .+. ..+.++++.|+|||||.|
T Consensus       258 vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L  336 (378)
T PRK15001        258 VDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGEL  336 (378)
T ss_pred             EECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEE
Confidence            45567888888874    22    23455555422 2456789999998655322   111 137889999999999999


Q ss_pred             EEEc
Q 017068           82 VISG   85 (378)
Q Consensus        82 vis~   85 (378)
                      ++..
T Consensus       337 ~iV~  340 (378)
T PRK15001        337 YIVA  340 (378)
T ss_pred             EEEE
Confidence            9875

>TIGR00417 speE spermidine synthase

Probab=95.62  E-value=0.014  Score=56.45  Aligned_cols=107  Identities=12%  Similarity=0.203  Sum_probs=58.0

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh-----c-c----ccc-cccccccCCCCCCcc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR-----G-L----IGV-YHDWCEPFSTYPRTY  287 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR-----G-l----ig~-~~~w~~~f~typrty  287 (378)
                      +...+-++||++|||.|+++..+++.+- +.+++-++.. +.+..+-+.     | +    +-+ ..|-.+-+...+++|
T Consensus        68 ~~~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~y  146 (270)
T TIGR00417        68 FTHPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTF  146 (270)
T ss_pred             hcCCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCc
Confidence            3444566999999999999988876541 1234444443 333333221     0 0    001 111111112235789


Q ss_pred             ccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          288 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       288 DliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      |+|-++.... ..    +....-....+-.+-|+|+|||.+++..
T Consensus       147 DvIi~D~~~~-~~----~~~~l~~~ef~~~~~~~L~pgG~lv~~~  186 (270)
T TIGR00417       147 DVIIVDSTDP-VG----PAETLFTKEFYELLKKALNEDGIFVAQS  186 (270)
T ss_pred             cEEEEeCCCC-CC----cccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence            9998764321 11    1111001345567889999999999863

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK01581 speE spermidine synthase; Validated

Probab=95.57  E-value=0.017  Score=58.92  Aligned_cols=157  Identities=15%  Similarity=0.133  Sum_probs=82.2

Q ss_pred             HHHHhh--hhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh-ccc----c---------ccc
Q 017068          212 YKNTLN--VKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR-GLI----G---------VYH  274 (378)
Q Consensus       212 Y~~~~~--~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR-Gli----g---------~~~  274 (378)
                      |-+.|.  ++....+-++||++|||.|+.+..++..+- +-+|+-++-. ..++++-+. .|.    |         +..
T Consensus       136 YHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~  214 (374)
T PRK01581        136 YHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVC  214 (374)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEEC
Confidence            444443  234556778999999999998887877641 2355666654 556655531 110    0         112


Q ss_pred             cccccCCCCCCccccccccCccccccCCCCC-CCCCCccceeeeecccccCCCeEEEeCCH-----HHHHHHHHHHhcCC
Q 017068          275 DWCEPFSTYPRTYDLIHVSGIESLIKNPGSN-KNSCSLVDLMVEMDRMLRPEGTVVVRDSP-----EVIDKVSRIANTVR  348 (378)
Q Consensus       275 ~w~~~f~typrtyDliH~~~~~~~~~~~~~~-~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-----~~~~~~~~~~~~l~  348 (378)
                      |-.+-+..-++.||+|-++-.     +|... ..+---...+-.+-|.|+|||.++.....     .....+.+..++.-
T Consensus       215 Da~~fL~~~~~~YDVIIvDl~-----DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af  289 (374)
T PRK01581        215 DAKEFLSSPSSLYDVIIIDFP-----DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAG  289 (374)
T ss_pred             cHHHHHHhcCCCccEEEEcCC-----CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhC
Confidence            222212233468999988721     11110 01111134667889999999999887541     22233333333333


Q ss_pred             ceEEEecCCCCCCC-CeEEEEEEecCC
Q 017068          349 WTAAVHDKEPGSNG-REKILVATKSLW  374 (378)
Q Consensus       349 W~~~~~~~~~~~~~-~e~~l~~~K~~w  374 (378)
                      -.+..+.+--.+.+ .=.+.+|.|.-.
T Consensus       290 ~~v~~y~t~vPsyg~~WgF~~as~~~~  316 (374)
T PRK01581        290 LTVKSYHTIVPSFGTDWGFHIAANSAY  316 (374)
T ss_pred             CceEEEEEecCCCCCceEEEEEeCCcc
Confidence            33332221111122 256777776544

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=95.57  E-value=0.013  Score=56.51  Aligned_cols=77  Identities=18%  Similarity=0.223  Sum_probs=50.5

Q ss_pred             CCChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEe----cCc--cc-------cccC--------ChHHH
Q 017068           14 RDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHC----SRC--LI-------PFTA--------YNATY   67 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~c----s~~--l~-------hw~~--------~~~~~   67 (378)
                      .|.++.+++.++++    |+. +.+...|+..++...++||.|++    +..  +.       .|..        ....+
T Consensus       102 ~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~i  181 (264)
T TIGR00446       102 NEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKEL  181 (264)
T ss_pred             EcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHH
Confidence            34556777766654    543 56677788777776778999985    211  10       1111        12358


Q ss_pred             HHHHhhcccCCcEEEEEcCCCCC
Q 017068           68 LIEVDRLLRPGGYLVISGPPVQW   90 (378)
Q Consensus        68 L~Ev~RVLkPGG~lvis~pp~~~   90 (378)
                      |.++.+.|||||++++++-..+.
T Consensus       182 L~~a~~~lkpgG~lvYstcs~~~  204 (264)
T TIGR00446       182 IDSAFDALKPGGVLVYSTCSLEP  204 (264)
T ss_pred             HHHHHHhcCCCCEEEEEeCCCCh
Confidence            99999999999999998764443

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=95.54  E-value=0.035  Score=51.29  Aligned_cols=69  Identities=17%  Similarity=0.047  Sum_probs=46.9

Q ss_pred             eEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068            6 ILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY   80 (378)
Q Consensus         6 v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~   80 (378)
                      |+++++.     +.+++.|+++    ++ .+.+..+|......+.+.||+|++..+..+       ...++.+.|+|||.
T Consensus       103 v~~vd~~-----~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~  170 (212)
T PRK00312        103 VFSVERI-----KTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPE-------IPRALLEQLKEGGI  170 (212)
T ss_pred             EEEEeCC-----HHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchh-------hhHHHHHhcCCCcE
Confidence            5555444     6777777764    34 356677776443224588999998765533       34678899999999


Q ss_pred             EEEEcC
Q 017068           81 LVISGP   86 (378)
Q Consensus        81 lvis~p   86 (378)
                      +++...
T Consensus       171 lv~~~~  176 (212)
T PRK00312        171 LVAPVG  176 (212)
T ss_pred             EEEEEc
Confidence            998653

>PRK00811 spermidine synthase; Provisional

Probab=95.51  E-value=0.017  Score=56.55  Aligned_cols=113  Identities=14%  Similarity=0.212  Sum_probs=63.3

Q ss_pred             HHHHhh--hhcCCCCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh------cc-----cc-cccc
Q 017068          212 YKNTLN--VKLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR------GL-----IG-VYHD  275 (378)
Q Consensus       212 Y~~~~~--~~~~~~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR------Gl-----ig-~~~~  275 (378)
                      |-+.|.  +++....-++|||+|||.|+++..++++ ++  -+|+-++-. ..+.++-+.      |+     +- +..|
T Consensus        62 Y~e~l~h~~~~~~~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~D  139 (283)
T PRK00811         62 YHEMMTHVPLFAHPNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGD  139 (283)
T ss_pred             HHHHhhhHHHhhCCCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECc
Confidence            444432  3444456789999999999999988876 33  244555544 444444332      11     00 1112


Q ss_pred             ccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          276 WCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       276 w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      -.+-+..-+.+||+|-++. +..+.    +...---..++-++-|+|+|||.+++.
T Consensus       140 a~~~l~~~~~~yDvIi~D~-~dp~~----~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        140 GIKFVAETENSFDVIIVDS-TDPVG----PAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             hHHHHhhCCCcccEEEECC-CCCCC----chhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            1111223347899998752 11110    111000134566889999999999986

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=95.49  E-value=0.0044  Score=57.52  Aligned_cols=123  Identities=17%  Similarity=0.187  Sum_probs=70.2

Q ss_pred             eeEEEecCCcceeeeeecc--CCCeeEEEeccCCCC-----cchHHHHhhcc--ccccc-cccccCC--CCCCccccccc
Q 017068          225 IRNIMDMNAFFGGFAAALT--SDPVWVMNVVPARKS-----STLSVIYDRGL--IGVYH-DWCEPFS--TYPRTYDLIHV  292 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~--~~~vwvmnv~p~~~~-----~~l~~i~eRGl--ig~~~-~w~~~f~--typrtyDliH~  292 (378)
                      -..+||+|||.|.|..+++  ..+.   |++-.+..     ..+.-+..+|+  +.+++ |-...+.  .-|.+.|.||.
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~Pd~---n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i   94 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRNPDI---NFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYI   94 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHSTTS---EEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHHHCCCC---CEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEE
Confidence            3489999999999999885  3445   44444433     34566777787  33332 1111111  11478888776


Q ss_pred             cCcc-ccccCCCCCCCCCCccceeeeecccccCCCeEEEe-CCHHHHHHHHHHHhc--CCceEE
Q 017068          293 SGIE-SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANT--VRWTAA  352 (378)
Q Consensus       293 ~~~~-~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-d~~~~~~~~~~~~~~--l~W~~~  352 (378)
                      .  | ..|-.....+.|=--...|-++-|+|+|||.+.+. |..++.+.+.+.++.  -.++..
T Consensus        95 ~--FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~  156 (195)
T PF02390_consen   95 N--FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI  156 (195)
T ss_dssp             E--S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred             e--CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence            3  3 22321111112222247888999999999999776 666777777766555  355554

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=95.35  E-value=0.0098  Score=61.38  Aligned_cols=106  Identities=20%  Similarity=0.234  Sum_probs=58.0

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHH---hh-cc-cc-ccccccccCCCC-CCccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY---DR-GL-IG-VYHDWCEPFSTY-PRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~---eR-Gl-ig-~~~~w~~~f~ty-prtyDliH~~~~~~  297 (378)
                      ..|||+|||.|+++..+...-- --.|+..|.+ ..+..+-   +| |+ +- +.+|-.+....+ +.+||.|-++--.+
T Consensus       246 ~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs  324 (427)
T PRK10901        246 ERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCS  324 (427)
T ss_pred             CEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCC
Confidence            4699999999999988765310 0135566654 5554443   22 32 11 122333221122 36899998544222


Q ss_pred             c----ccCCCCCCCCC---------CccceeeeecccccCCCeEEEeC
Q 017068          298 L----IKNPGSNKNSC---------SLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       298 ~----~~~~~~~~~~c---------~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .    ...|+..-.+-         ....+|-+.=|+|+|||.++++.
T Consensus       325 ~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst  372 (427)
T PRK10901        325 ATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT  372 (427)
T ss_pred             cccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            1    11111100000         01257888999999999999874

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=95.28  E-value=0.0073  Score=58.34  Aligned_cols=102  Identities=25%  Similarity=0.302  Sum_probs=55.1

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHh---h-cc--cccc-ccccccCCCCCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYD---R-GL--IGVY-HDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~e---R-Gl--ig~~-~~w~~~f~typrtyDliH~~~  294 (378)
                      ..|||++||.|+++.+|...   .-   .|+..|.+ ..++.+-+   | |+  +-++ +|-. .++.....||.|-++-
T Consensus        73 ~~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~-~~~~~~~~fD~Vl~D~  148 (264)
T TIGR00446        73 ERVLDMAAAPGGKTTQISALMKNEG---AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGR-VFGAAVPKFDAILLDA  148 (264)
T ss_pred             CEEEEECCCchHHHHHHHHHcCCCC---EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHH-HhhhhccCCCEEEEcC
Confidence            36999999999999766432   22   24566655 55543332   2 33  1122 2221 2333335699987643


Q ss_pred             ccccc----cCCCCCCCCC--C-------ccceeeeecccccCCCeEEEe
Q 017068          295 IESLI----KNPGSNKNSC--S-------LVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       295 ~~~~~----~~~~~~~~~c--~-------~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      -.|..    .+|+..-.+.  .       -..+|-++=|+|||||++|.+
T Consensus       149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs  198 (264)
T TIGR00446       149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS  198 (264)
T ss_pred             CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            22210    1111000000  0       125888889999999999998

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=95.25  E-value=0.024  Score=55.47  Aligned_cols=43  Identities=28%  Similarity=0.474  Sum_probs=37.6

Q ss_pred             CCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           44 PAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        44 pd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      ..+-||+|+|..+++++..+. .+++..++..|+|||+|++...
T Consensus       199 ~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s  242 (268)
T COG1352         199 FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS  242 (268)
T ss_pred             ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence            456799999999999997754 5899999999999999999654

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=95.25  E-value=0.041  Score=51.90  Aligned_cols=42  Identities=33%  Similarity=0.692  Sum_probs=35.2

Q ss_pred             CCCceeEEEecCccccccCCh--HHHHHHHhhcccCCcEEEEEcC
Q 017068           44 PAFSFDIVHCSRCLIPFTAYN--ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        44 pd~SFD~V~cs~~l~hw~~~~--~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      ..++||+|+|..++ |+....  ..+++++.++|+|||.|++-+|
T Consensus        99 ~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGP  142 (204)
T PF06080_consen   99 SPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGP  142 (204)
T ss_pred             CCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence            35699999999965 665533  4889999999999999999888

The function of this family is unknown.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=95.24  E-value=0.011  Score=56.38  Aligned_cols=128  Identities=14%  Similarity=0.221  Sum_probs=68.4

Q ss_pred             CCeeEEEecCCccee----eeeeccCCCeeEEEeccCCCC-cchH----HHHhhcc---ccc-cccccccCCC----C-C
Q 017068          223 PAIRNIMDMNAFFGG----FAAALTSDPVWVMNVVPARKS-STLS----VIYDRGL---IGV-YHDWCEPFST----Y-P  284 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~----faa~L~~~~vwvmnv~p~~~~-~~l~----~i~eRGl---ig~-~~~w~~~f~t----y-p  284 (378)
                      .+-++|||+|||+|.    +|+++....    .|+-.|.. ..+.    .+-+-|+   |-+ ..|..+.++.    . .
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g----~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~  142 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDG----RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPK  142 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCC----EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCC
Confidence            346799999999886    333443222    12333322 2222    2233344   111 2233332221    1 3


Q ss_pred             CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-------------H----HHHHHHHH----H
Q 017068          285 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-------------P----EVIDKVSR----I  343 (378)
Q Consensus       285 rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-------------~----~~~~~~~~----~  343 (378)
                      .+||+|.++.-=..            ...++-++-|.|||||.+|+.+.             .    .....+++    +
T Consensus       143 ~~fD~VfiDa~k~~------------y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i  210 (234)
T PLN02781        143 PEFDFAFVDADKPN------------YVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLL  210 (234)
T ss_pred             CCCCEEEECCCHHH------------HHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHH
Confidence            58999987533222            23566677899999999997531             0    12233433    3


Q ss_pred             HhcCCceEEEecCCCCCCCCeEEEEEEec
Q 017068          344 ANTVRWTAAVHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       344 ~~~l~W~~~~~~~~~~~~~~e~~l~~~K~  372 (378)
                      ...=+++......      .+++++++|.
T Consensus       211 ~~~~~~~~~~lp~------gdG~~i~~k~  233 (234)
T PLN02781        211 ASDPRVEISQISI------GDGVTLCRRL  233 (234)
T ss_pred             hhCCCeEEEEEEe------CCccEEEEEe
Confidence            4445677666543      3568888875

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.22  E-value=0.05  Score=51.82  Aligned_cols=70  Identities=20%  Similarity=0.337  Sum_probs=45.1

Q ss_pred             CChHHHHHHHHHcC-----CCeEEEEcccCCCCCCCCceeEEEecCcccc------ccC-------------------Ch
Q 017068           15 DSHKAQIQFALERG-----IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP------FTA-------------------YN   64 (378)
Q Consensus        15 D~se~~vq~A~erg-----~~~~~~v~dae~LPfpd~SFD~V~cs~~l~h------w~~-------------------~~   64 (378)
                      |+|+.+++.|+++.     ..+.+..+|... ++++++||+|+|+--...      ...                   .-
T Consensus       139 Dis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~  217 (275)
T PRK09328        139 DISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFY  217 (275)
T ss_pred             ECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHH
Confidence            45567888887751     235666667533 455789999998521110      000                   00


Q ss_pred             HHHHHHHhhcccCCcEEEEEc
Q 017068           65 ATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        65 ~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      ..+++++.++|||||++++..
T Consensus       218 ~~~~~~~~~~Lk~gG~l~~e~  238 (275)
T PRK09328        218 RRIIEQAPRYLKPGGWLLLEI  238 (275)
T ss_pred             HHHHHHHHHhcccCCEEEEEE
Confidence            257788889999999999854

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=95.21  E-value=0.028  Score=58.20  Aligned_cols=140  Identities=19%  Similarity=0.300  Sum_probs=73.3

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----cc--cc-ccccccccCC----CCCCccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GL--IG-VYHDWCEPFS----TYPRTYDLI  290 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig-~~~~w~~~f~----typrtyDli  290 (378)
                      -.|||+|||.|+++.+|...   .-   .|+..|.. ..+..+-++    |+  +- +-.|-.. ++    ..+.+||.|
T Consensus       254 ~~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~-~~~~~~~~~~~fD~V  329 (434)
T PRK14901        254 EVILDACAAPGGKTTHIAELMGDQG---EIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRN-LLELKPQWRGYFDRI  329 (434)
T ss_pred             CEEEEeCCCCchhHHHHHHHhCCCc---eEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhh-cccccccccccCCEE
Confidence            46999999999999877643   22   34555654 555444332    33  11 1122221 12    223689998


Q ss_pred             ccc----CccccccCCCCCCCC---CC-------ccceeeeecccccCCCeEEEeC----CHHHHHHHHHHHhcC-CceE
Q 017068          291 HVS----GIESLIKNPGSNKNS---CS-------LVDLMVEMDRMLRPEGTVVVRD----SPEVIDKVSRIANTV-RWTA  351 (378)
Q Consensus       291 H~~----~~~~~~~~~~~~~~~---c~-------~~~~l~EmDRiLRPgG~~ii~d----~~~~~~~~~~~~~~l-~W~~  351 (378)
                      -++    +.-..-+.|+.. ++   ..       ...+|-++=|+|||||.+|.+.    ..+....|+.++++- .|+.
T Consensus       330 l~DaPCSg~G~~~r~p~~~-~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~  408 (434)
T PRK14901        330 LLDAPCSGLGTLHRHPDAR-WRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKL  408 (434)
T ss_pred             EEeCCCCcccccccCcchh-hhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEe
Confidence            754    211111111100 00   01       1467889999999999999874    234445555555443 3543


Q ss_pred             EEec--CCCCCCCCeEEEEEE
Q 017068          352 AVHD--KEPGSNGREKILVAT  370 (378)
Q Consensus       352 ~~~~--~~~~~~~~e~~l~~~  370 (378)
                      ....  .-+..++.+++++|.
T Consensus       409 ~~~~~~~~P~~~~~dGfF~a~  429 (434)
T PRK14901        409 EPPKQKIWPHRQDGDGFFMAV  429 (434)
T ss_pred             cCCCCccCCCCCCCCcEEEEE
Confidence            3110  001122467888874

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=95.21  E-value=0.0073  Score=60.29  Aligned_cols=72  Identities=14%  Similarity=0.118  Sum_probs=49.7

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccc-------ccccccc-ccCCCCCCccccccccCcc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLI-------GVYHDWC-EPFSTYPRTYDLIHVSGIE  296 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGli-------g~~~~w~-~~f~typrtyDliH~~~~~  296 (378)
                      .+|||+|||+|.++..|..+..   +|+-.|.+ .+|.++-+|.--       +.-.++. ..+...+.+||+|-|..++
T Consensus       146 ~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL  222 (315)
T PLN02585        146 VTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVL  222 (315)
T ss_pred             CEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEE
Confidence            4799999999999999988764   67888877 888877776321       0111111 1122336899999998887


Q ss_pred             cccc
Q 017068          297 SLIK  300 (378)
Q Consensus       297 ~~~~  300 (378)
                      .++.
T Consensus       223 ~H~p  226 (315)
T PLN02585        223 IHYP  226 (315)
T ss_pred             EecC
Confidence            6653

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=95.16  E-value=0.0086  Score=53.45  Aligned_cols=47  Identities=19%  Similarity=0.187  Sum_probs=36.0

Q ss_pred             cccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          277 CEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       277 ~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .+.+|.-+.+||+|-+..++..+.         +....|-|+-|+|+|||.+++.|
T Consensus        35 ~~~lp~~~~~fD~v~~~~~l~~~~---------d~~~~l~ei~rvLkpGG~l~i~d   81 (160)
T PLN02232         35 AIDLPFDDCEFDAVTMGYGLRNVV---------DRLRAMKEMYRVLKPGSRVSILD   81 (160)
T ss_pred             hhhCCCCCCCeeEEEecchhhcCC---------CHHHHHHHHHHHcCcCeEEEEEE
Confidence            344654447999999887666543         23578999999999999998875

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=95.07  E-value=0.013  Score=61.25  Aligned_cols=128  Identities=22%  Similarity=0.311  Sum_probs=65.8

Q ss_pred             cCccccccchHHHHHHHHHHHHHhhhhcCCCC----eeEEEecCCcceeeee------eccCCCeeEEEeccCCCC----
Q 017068          193 NGYDVFEADSRRWRRRVAYYKNTLNVKLGTPA----IRNIMDMNAFFGGFAA------ALTSDPVWVMNVVPARKS----  258 (378)
Q Consensus       193 ~~~~~F~~d~~~w~~~v~~Y~~~~~~~~~~~~----iR~vlDm~ag~g~faa------~L~~~~vwvmnv~p~~~~----  258 (378)
                      .+.+.|+.|...+..-=+.-.+-|.......+    --+|||+|||.|-+..      +-...++=   |.+++..    
T Consensus       151 ~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~---VyAVEkn~~A~  227 (448)
T PF05185_consen  151 QTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVK---VYAVEKNPNAV  227 (448)
T ss_dssp             HHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESE---EEEEESSTHHH
T ss_pred             ccHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeE---EEEEcCCHhHH
Confidence            36789999987665432221111222234443    3569999999998852      12233442   2333332    


Q ss_pred             cchH-HHHhhcc---ccccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          259 STLS-VIYDRGL---IGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       259 ~~l~-~i~eRGl---ig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      .+|+ .+-+.|+   |-+++.=-+.+.. |--.|+|.+-.+-|...      +. .+..+|.-.||.|+|||.+|=+
T Consensus       228 ~~l~~~v~~n~w~~~V~vi~~d~r~v~l-pekvDIIVSElLGsfg~------nE-l~pE~Lda~~rfLkp~Gi~IP~  296 (448)
T PF05185_consen  228 VTLQKRVNANGWGDKVTVIHGDMREVEL-PEKVDIIVSELLGSFGD------NE-LSPECLDAADRFLKPDGIMIPS  296 (448)
T ss_dssp             HHHHHHHHHTTTTTTEEEEES-TTTSCH-SS-EEEEEE---BTTBT------TT-SHHHHHHHGGGGEEEEEEEESS
T ss_pred             HHHHHHHHhcCCCCeEEEEeCcccCCCC-CCceeEEEEeccCCccc------cc-cCHHHHHHHHhhcCCCCEEeCc
Confidence            2343 2345555   5555544333322 45678888765544322      11 3345678889999999877643

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=95.04  E-value=0.039  Score=52.73  Aligned_cols=81  Identities=19%  Similarity=0.206  Sum_probs=57.1

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcCC-CeEEEEcccCCC-C--CCCCceeEEEecCccccccCCh--------HHHHHHH
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERGI-PAFVAMLGTRRL-P--FPAFSFDIVHCSRCLIPFTAYN--------ATYLIEV   71 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg~-~~~~~v~dae~L-P--fpd~SFD~V~cs~~l~hw~~~~--------~~~L~Ev   71 (378)
                      .+.++|.+...= -...++.+.+.++ ++.+...|+..+ +  ++++|.|-|+..+- -+|+-..        ...++++
T Consensus        73 ~nfiGiEi~~~~-v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP-DPWpKkRH~KRRl~~~~fl~~~  150 (227)
T COG0220          73 KNFLGIEIRVPG-VAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP-DPWPKKRHHKRRLTQPEFLKLY  150 (227)
T ss_pred             CCEEEEEEehHH-HHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-CCCCCccccccccCCHHHHHHH
Confidence            466777776532 2344677778899 788887887544 2  46669999986553 3454322        2789999


Q ss_pred             hhcccCCcEEEEEcC
Q 017068           72 DRLLRPGGYLVISGP   86 (378)
Q Consensus        72 ~RVLkPGG~lvis~p   86 (378)
                      .|+|||||.|.+.+-
T Consensus       151 a~~Lk~gG~l~~aTD  165 (227)
T COG0220         151 ARKLKPGGVLHFATD  165 (227)
T ss_pred             HHHccCCCEEEEEec
Confidence            999999999999763

>TIGR00536 hemK_fam HemK family putative methylases

Probab=94.99  E-value=0.056  Score=52.66  Aligned_cols=76  Identities=13%  Similarity=0.135  Sum_probs=49.6

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecC-------------ccccccC---
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSR-------------CLIPFTA---   62 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~-------------~l~hw~~---   62 (378)
                      .|++++     +|+.+++.|+++    +..  +.+..+|... +++++.||+|+|+-             .+.|-+.   
T Consensus       140 ~v~avD-----is~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL  213 (284)
T TIGR00536       140 EVIAVD-----ISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLAL  213 (284)
T ss_pred             EEEEEE-----CCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHh
Confidence            455555     456788887774    443  6677777644 56666899999851             1112110   


Q ss_pred             --------ChHHHHHHHhhcccCCcEEEEEcC
Q 017068           63 --------YNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        63 --------~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                              .-...+.++.+.|+|||++++...
T Consensus       214 ~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g  245 (284)
T TIGR00536       214 VGGDDGLNILRQIIELAPDYLKPNGFLVCEIG  245 (284)
T ss_pred             cCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence                    112678899999999999998654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK01581 speE spermidine synthase; Validated

Probab=94.95  E-value=0.057  Score=55.24  Aligned_cols=76  Identities=16%  Similarity=0.225  Sum_probs=50.2

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc------------CCCeEEEEcccCC-CCCCCCceeEEEecCccccccC-----ChHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALER------------GIPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTA-----YNAT   66 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er------------g~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~-----~~~~   66 (378)
                      .|+++++.     +++++.|++.            ...+.+.++|+.+ ++-.++.||+|++... -+...     ....
T Consensus       176 ~It~VEID-----peVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~-DP~~~~~~~LyT~E  249 (374)
T PRK01581        176 HVDLVDLD-----GSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFP-DPATELLSTLYTSE  249 (374)
T ss_pred             eEEEEeCC-----HHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCC-CccccchhhhhHHH
Confidence            35555555     6999999961            2245667777654 4555778999998631 11111     1136


Q ss_pred             HHHHHhhcccCCcEEEEEcC
Q 017068           67 YLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        67 ~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +++.+.+.|+|||.|++...
T Consensus       250 Fy~~~~~~LkPgGV~V~Qs~  269 (374)
T PRK01581        250 LFARIATFLTEDGAFVCQSN  269 (374)
T ss_pred             HHHHHHHhcCCCcEEEEecC
Confidence            88999999999999988643

>PRK00811 spermidine synthase; Provisional

Probab=94.90  E-value=0.069  Score=52.26  Aligned_cols=75  Identities=12%  Similarity=0.137  Sum_probs=50.0

Q ss_pred             eEEEecCCCCChHHHHHHHHHcC----------CCeEEEEcccCC-CCCCCCceeEEEecCccccccCC----hHHHHHH
Q 017068            6 ILTLSFAPRDSHKAQIQFALERG----------IPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAY----NATYLIE   70 (378)
Q Consensus         6 v~~ms~ap~D~se~~vq~A~erg----------~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~----~~~~L~E   70 (378)
                      |+++++.     +.+++.|++.-          ..+.+..+|+.+ +...+++||+|++... -++...    ...++++
T Consensus       103 V~~VEid-----~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~-dp~~~~~~l~t~ef~~~  176 (283)
T PRK00811        103 ITLVEID-----ERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDST-DPVGPAEGLFTKEFYEN  176 (283)
T ss_pred             EEEEeCC-----HHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCC-CCCCchhhhhHHHHHHH
Confidence            4555555     58888888741          235567777643 3446789999998543 233221    1367889


Q ss_pred             HhhcccCCcEEEEEcC
Q 017068           71 VDRLLRPGGYLVISGP   86 (378)
Q Consensus        71 v~RVLkPGG~lvis~p   86 (378)
                      +.|.|+|||.+++...
T Consensus       177 ~~~~L~~gGvlv~~~~  192 (283)
T PRK00811        177 CKRALKEDGIFVAQSG  192 (283)
T ss_pred             HHHhcCCCcEEEEeCC
Confidence            9999999999998643

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=94.87  E-value=0.008  Score=65.98  Aligned_cols=127  Identities=17%  Similarity=0.146  Sum_probs=72.2

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hccc-c----ccccccccCCCCCCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLI-G----VYHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGli-g----~~~~w~~~f~typrtyDliH~~~~  295 (378)
                      +.|||++||+|+|+.++...+.-  .|+-+|.+ ..+..+-+    .|+- .    +..|..+.+....++||+|-++--
T Consensus       540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP  617 (702)
T PRK11783        540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP  617 (702)
T ss_pred             CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence            68999999999999998876431  35666655 45543332    2331 0    122322212123578999998632


Q ss_pred             -cccccCC-CCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEe
Q 017068          296 -ESLIKNP-GSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVH  354 (378)
Q Consensus       296 -~~~~~~~-~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~  354 (378)
                       |..-... ......-....++-..=|+|+|||.+++......+....+.+..-.+++...
T Consensus       618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i  678 (702)
T PRK11783        618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEI  678 (702)
T ss_pred             CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEE
Confidence             2210000 0000000123566667889999999999765544444466666667777764

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=94.76  E-value=0.0061  Score=57.92  Aligned_cols=123  Identities=18%  Similarity=0.223  Sum_probs=65.7

Q ss_pred             CeeEEEecCCcceeeeeeccCCCe-eEEEeccCCCCcchHHHH-----hhcccccccc-ccccCCCCCCccccccccCcc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDPV-WVMNVVPARKSSTLSVIY-----DRGLIGVYHD-WCEPFSTYPRTYDLIHVSGIE  296 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~v-wvmnv~p~~~~~~l~~i~-----eRGlig~~~~-w~~~f~typrtyDliH~~~~~  296 (378)
                      +...+||.|||.|..+-.|+-+-. .|==|-|..  .-++.+.     +.+-+|-+.. ==+.|-+-+..||+|=+-||.
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~--~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l  132 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVE--KFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL  132 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-H--HHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCH--HHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence            588899999999999976654332 222222322  2222233     2223332221 111232335799999999999


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH----------------HHHHHHHHHHhcCCceEEEec
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----------------EVIDKVSRIANTVRWTAAVHD  355 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~----------------~~~~~~~~~~~~l~W~~~~~~  355 (378)
                      .+++      + ..+..+|----.-|||+|.+|+-|+.                -.-+.+.+|.+.=-.++...+
T Consensus       133 ghLT------D-~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~  200 (218)
T PF05891_consen  133 GHLT------D-EDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE  200 (218)
T ss_dssp             GGS-------H-HHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred             ccCC------H-HHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence            9987      2 23345566666789999999998531                134556666666666665543

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=94.72  E-value=0.016  Score=60.22  Aligned_cols=102  Identities=21%  Similarity=0.275  Sum_probs=56.4

Q ss_pred             eEEEecCCcceeeeeeccC---CCeeEEEeccCCCC-cchHHHHh----hcc--c-cccccccccCCCCCCcccccccc-
Q 017068          226 RNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYD----RGL--I-GVYHDWCEPFSTYPRTYDLIHVS-  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~---~~vwvmnv~p~~~~-~~l~~i~e----RGl--i-g~~~~w~~~f~typrtyDliH~~-  293 (378)
                      ..|||+|||.|+++.+|..   ..-   .|+..|.+ ..++.+-+    .|+  + -+.+|... ++ .+.+||.|-++ 
T Consensus       252 ~~VLDlgaG~G~kt~~la~~~~~~~---~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~-~~-~~~~fD~Vl~D~  326 (445)
T PRK14904        252 STVLDLCAAPGGKSTFMAELMQNRG---QITAVDRYPQKLEKIRSHASALGITIIETIEGDARS-FS-PEEQPDAILLDA  326 (445)
T ss_pred             CEEEEECCCCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccc-cc-cCCCCCEEEEcC
Confidence            5799999999998866653   222   34555655 55543332    243  1 12233332 22 23679998753 


Q ss_pred             ---CccccccCCCCCCCCC--Cc-------cceeeeecccccCCCeEEEeC
Q 017068          294 ---GIESLIKNPGSNKNSC--SL-------VDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       294 ---~~~~~~~~~~~~~~~c--~~-------~~~l~EmDRiLRPgG~~ii~d  332 (378)
                         +.-.....|+..-...  .+       ..+|-++=|+|||||.++++.
T Consensus       327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst  377 (445)
T PRK14904        327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT  377 (445)
T ss_pred             CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence               2211111111100000  11       257889999999999999984

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=94.71  E-value=0.047  Score=50.68  Aligned_cols=81  Identities=25%  Similarity=0.338  Sum_probs=51.6

Q ss_pred             CCCeEEEecCCCCChHHHHHHHHHcCCC-eEEEEcccCC-CC--CCCCceeEEEecCccccccCCh--------HHHHHH
Q 017068            3 SENILTLSFAPRDSHKAQIQFALERGIP-AFVAMLGTRR-LP--FPAFSFDIVHCSRCLIPFTAYN--------ATYLIE   70 (378)
Q Consensus         3 ~~~v~~ms~ap~D~se~~vq~A~erg~~-~~~~v~dae~-LP--fpd~SFD~V~cs~~l~hw~~~~--------~~~L~E   70 (378)
                      +.+++++.+...-+..+ .+.+.+++++ +.+..+|+.. |+  ++++++|.|+..+- -+|+...        ...+.+
T Consensus        41 d~n~iGiE~~~~~v~~a-~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP-DPWpK~rH~krRl~~~~fl~~  118 (195)
T PF02390_consen   41 DINFIGIEIRKKRVAKA-LRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP-DPWPKKRHHKRRLVNPEFLEL  118 (195)
T ss_dssp             TSEEEEEES-HHHHHHH-HHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES------SGGGGGGSTTSHHHHHH
T ss_pred             CCCEEEEecchHHHHHH-HHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-CCCcccchhhhhcCCchHHHH
Confidence            46778888776433333 3444455664 5667778766 33  67899999986542 3444311        279999


Q ss_pred             HhhcccCCcEEEEEc
Q 017068           71 VDRLLRPGGYLVISG   85 (378)
Q Consensus        71 v~RVLkPGG~lvis~   85 (378)
                      +.|+|+|||.+.+.+
T Consensus       119 ~~~~L~~gG~l~~~T  133 (195)
T PF02390_consen  119 LARVLKPGGELYFAT  133 (195)
T ss_dssp             HHHHEEEEEEEEEEE
T ss_pred             HHHHcCCCCEEEEEe
Confidence            999999999999876

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=94.69  E-value=0.11  Score=49.49  Aligned_cols=78  Identities=17%  Similarity=0.201  Sum_probs=53.1

Q ss_pred             ccCCCCC---CCCceeEEEecCccccccCCh--HHHHHHHhhcccCCcE-----EEEEcCCCCCCcc-chHHHHHHHHHH
Q 017068           37 GTRRLPF---PAFSFDIVHCSRCLIPFTAYN--ATYLIEVDRLLRPGGY-----LVISGPPVQWPKQ-DKEWADLQAVAR  105 (378)
Q Consensus        37 dae~LPf---pd~SFD~V~cs~~l~hw~~~~--~~~L~Ev~RVLkPGG~-----lvis~pp~~~~~~-~~~w~~l~~l~~  105 (378)
                      |-...|.   +++.||+|.|+.++-..+++.  +..++-+.+.|||+|.     |++..|....... +-.-+.+..+..
T Consensus        91 DFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~  170 (219)
T PF11968_consen   91 DFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIME  170 (219)
T ss_pred             ccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHH
Confidence            4444454   488999999999998888765  6899999999999999     8877662111111 111234556667


Q ss_pred             Hhceeeecc
Q 017068          106 ALCYELIAV  114 (378)
Q Consensus       106 ~lcw~~~~~  114 (378)
                      .+.+..+..
T Consensus       171 ~LGf~~~~~  179 (219)
T PF11968_consen  171 SLGFTRVKY  179 (219)
T ss_pred             hCCcEEEEE
Confidence            777766554

>TIGR00478 tly hemolysin TlyA family protein

Probab=94.61  E-value=0.016  Score=55.34  Aligned_cols=107  Identities=15%  Similarity=0.212  Sum_probs=64.8

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh-------ccccc-cccccccCCCCCCccccccccCcc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR-------GLIGV-YHDWCEPFSTYPRTYDLIHVSGIE  296 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR-------Glig~-~~~w~~~f~typrtyDliH~~~~~  296 (378)
                      ++|||+|||+|+|+-.|+.++.  =.|...|.. ++|.--+..       +..-+ +-+|.+-.      .|++.|+-+|
T Consensus        77 ~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~------~d~~~~Dvsf  148 (228)
T TIGR00478        77 KIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIF------PDFATFDVSF  148 (228)
T ss_pred             CEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcC------CCceeeeEEE
Confidence            5899999999999999988753  235666655 566542222       11111 22444422      2555555555


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEe-------------------CC---HHHHHHHHHHHhcCCceEEE
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-------------------DS---PEVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-------------------d~---~~~~~~~~~~~~~l~W~~~~  353 (378)
                      ....            .+|-.|.+.|+| |.+|+-                   |+   ...++++...+.++-|++.-
T Consensus       149 iS~~------------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (228)
T TIGR00478       149 ISLI------------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKK  214 (228)
T ss_pred             eehH------------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEee
Confidence            4332            356666777777 665542                   32   24677777778888898764

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=94.59  E-value=0.11  Score=50.83  Aligned_cols=72  Identities=15%  Similarity=0.110  Sum_probs=46.4

Q ss_pred             CCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecC------c-------cccccC-------C----
Q 017068           14 RDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSR------C-------LIPFTA-------Y----   63 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~------~-------l~hw~~-------~----   63 (378)
                      .|+|+.+++.|+++    ++.  +.+..+|... ++++++||+|+|+-      .       +.|-+.       +    
T Consensus       151 vDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~  229 (284)
T TIGR03533       151 VDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDL  229 (284)
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHH
Confidence            34556788877765    543  5677777532 45677899999851      0       111110       0    


Q ss_pred             hHHHHHHHhhcccCCcEEEEEcC
Q 017068           64 NATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        64 ~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      -...++++.++|+|||++++-..
T Consensus       230 ~~~il~~a~~~L~~gG~l~~e~g  252 (284)
T TIGR03533       230 VRRILAEAADHLNENGVLVVEVG  252 (284)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEEC
Confidence            02668899999999999998654

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK07402 precorrin-6B methylase; Provisional

Probab=94.58  E-value=0.094  Score=47.93  Aligned_cols=72  Identities=19%  Similarity=0.172  Sum_probs=45.5

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCC-CCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG   78 (378)
                      .|+++++.     +.+++.|+++    ++ .+.+..+|+.. ++.-...+|.++...     ......+++++.|+|+||
T Consensus        66 ~V~~vD~s-----~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-----~~~~~~~l~~~~~~Lkpg  135 (196)
T PRK07402         66 RVIAIERD-----EEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-----GRPIKEILQAVWQYLKPG  135 (196)
T ss_pred             EEEEEeCC-----HHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC-----CcCHHHHHHHHHHhcCCC
Confidence            46666665     4677776653    43 35566666643 333233467665421     223248999999999999


Q ss_pred             cEEEEEcC
Q 017068           79 GYLVISGP   86 (378)
Q Consensus        79 G~lvis~p   86 (378)
                      |+|++..+
T Consensus       136 G~li~~~~  143 (196)
T PRK07402        136 GRLVATAS  143 (196)
T ss_pred             eEEEEEee
Confidence            99999865

>PHA03411 putative methyltransferase; Provisional

Probab=94.55  E-value=0.018  Score=56.65  Aligned_cols=101  Identities=12%  Similarity=0.109  Sum_probs=61.4

Q ss_pred             eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhhcc-cc-ccccccccCCCCCCccccccccCcccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDRGL-IG-VYHDWCEPFSTYPRTYDLIHVSGIESLIK  300 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eRGl-ig-~~~~w~~~f~typrtyDliH~~~~~~~~~  300 (378)
                      ..|||+|||+|.|+..+..+  ..   +|+-.|.. ..++.+-++-- +- +..|-.+..  -+++||+|-++-.|....
T Consensus        66 grVLDLGcGsGilsl~la~r~~~~---~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~--~~~kFDlIIsNPPF~~l~  140 (279)
T PHA03411         66 GKVLDLCAGIGRLSFCMLHRCKPE---KIVCVELNPEFARIGKRLLPEAEWITSDVFEFE--SNEKFDVVISNPPFGKIN  140 (279)
T ss_pred             CeEEEcCCCCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhCcCCEEEECchhhhc--ccCCCcEEEEcCCccccC
Confidence            47999999999998877653  22   56666765 77776655410 11 122222211  136899999988876542


Q ss_pred             CCCCCC----------CCC-CccceeeeecccccCCCeEEEe
Q 017068          301 NPGSNK----------NSC-SLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       301 ~~~~~~----------~~c-~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      ..+...          ..| .+...+-..-++|.|+|.+++-
T Consensus       141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            111111          011 1456778889999999977654

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=94.49  E-value=0.04  Score=57.11  Aligned_cols=78  Identities=22%  Similarity=0.410  Sum_probs=49.6

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCC--CCCCceeEEEecC-c-----ccc-----ccCC---
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLP--FPAFSFDIVHCSR-C-----LIP-----FTAY---   63 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LP--fpd~SFD~V~cs~-~-----l~h-----w~~~---   63 (378)
                      .|+++++.     +.+++.++++    |+. +.+..+|+..++  ++ ++||+|++.- |     +.+     |...   
T Consensus       277 ~v~avDi~-----~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~  350 (444)
T PRK14902        277 KVVALDIH-----EHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKED  350 (444)
T ss_pred             EEEEEeCC-----HHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHH
Confidence            35555554     5777766653    543 567778877653  44 7899998631 0     111     1110   


Q ss_pred             -------hHHHHHHHhhcccCCcEEEEEcCCC
Q 017068           64 -------NATYLIEVDRLLRPGGYLVISGPPV   88 (378)
Q Consensus        64 -------~~~~L~Ev~RVLkPGG~lvis~pp~   88 (378)
                             ...+|.++.|+|||||.+++++-..
T Consensus       351 ~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        351 IESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence                   1257999999999999999886533

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=94.46  E-value=0.096  Score=51.97  Aligned_cols=71  Identities=15%  Similarity=0.114  Sum_probs=46.5

Q ss_pred             CCChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCc-------------cccccC-------C----
Q 017068           14 RDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRC-------------LIPFTA-------Y----   63 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~-------------l~hw~~-------~----   63 (378)
                      .|+|+.+++.|+++    ++  .+.+..+|... ++++++||+|+|+-=             +.|.+.       +    
T Consensus       163 vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~  241 (307)
T PRK11805        163 VDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDL  241 (307)
T ss_pred             EeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHH
Confidence            35556888887775    44  26677777533 345678999998610             111111       0    


Q ss_pred             hHHHHHHHhhcccCCcEEEEEc
Q 017068           64 NATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        64 ~~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      -...++++.++|+|||++++-.
T Consensus       242 ~~~i~~~a~~~L~pgG~l~~E~  263 (307)
T PRK11805        242 VRRILAEAPDYLTEDGVLVVEV  263 (307)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEE
Confidence            0267899999999999999854

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=94.44  E-value=0.089  Score=51.63  Aligned_cols=84  Identities=20%  Similarity=0.310  Sum_probs=56.7

Q ss_pred             EEEEcccCCCCCCC---CceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcCCCCCCcc---------chHHHH
Q 017068           32 FVAMLGTRRLPFPA---FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQ---------DKEWAD   99 (378)
Q Consensus        32 ~~~v~dae~LPfpd---~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~pp~~~~~~---------~~~w~~   99 (378)
                      ....+|-..+.-++   ++||+|+..+ ++.-...--..+..|.++|||||+++=.+|-.+....         +-.|++
T Consensus       147 sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eE  225 (270)
T PF07942_consen  147 SMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEE  225 (270)
T ss_pred             eEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHH
Confidence            34556655554444   7999998754 3333332347899999999999988766663322211         122889


Q ss_pred             HHHHHHHhceeeecccc
Q 017068          100 LQAVARALCYELIAVDG  116 (378)
Q Consensus       100 l~~l~~~lcw~~~~~~~  116 (378)
                      +..+++.+.|+.+.+..
T Consensus       226 i~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  226 IKELIEKLGFEIEKEES  242 (270)
T ss_pred             HHHHHHHCCCEEEEEEE
Confidence            99999999999886643

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=94.40  E-value=0.11  Score=50.44  Aligned_cols=52  Identities=21%  Similarity=0.331  Sum_probs=33.4

Q ss_pred             EEEEcccCCC--CCCCCceeEEEecCcccccc-C-ChHHHHHHHhhcccCCcEEEE
Q 017068           32 FVAMLGTRRL--PFPAFSFDIVHCSRCLIPFT-A-YNATYLIEVDRLLRPGGYLVI   83 (378)
Q Consensus        32 ~~~v~dae~L--Pfpd~SFD~V~cs~~l~hw~-~-~~~~~L~Ev~RVLkPGG~lvi   83 (378)
                      .+..+|+.++  .|+|+|||+|+---=..-.. + ....+.+|++|||||||.++-
T Consensus       188 ~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH  243 (287)
T COG2521         188 KIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH  243 (287)
T ss_pred             EEecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence            4555666444  49999999996311000000 0 113788999999999999985

>PLN03075 nicotianamine synthase; Provisional

Probab=94.37  E-value=0.017  Score=57.39  Aligned_cols=135  Identities=10%  Similarity=0.056  Sum_probs=75.3

Q ss_pred             CeeEEEecCCcceeeeeeccC----CCeeEEEeccCCCC-cchHH---HH--hhcc---cc-ccccccccCCCCCCcccc
Q 017068          224 AIRNIMDMNAFFGGFAAALTS----DPVWVMNVVPARKS-STLSV---IY--DRGL---IG-VYHDWCEPFSTYPRTYDL  289 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~----~~vwvmnv~p~~~~-~~l~~---i~--eRGl---ig-~~~~w~~~f~typrtyDl  289 (378)
                      .-+.|+|+|||-|++.|.++.    .+--+   .-.|.. ..++.   .+  +.|+   +- ..+|-.+. ++....||+
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~---~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~-~~~l~~FDl  198 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSF---HNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV-TESLKEYDV  198 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEE---EEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc-ccccCCcCE
Confidence            568999999999988666442    22222   333333 22221   22  2444   11 12333332 111368999


Q ss_pred             ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH---HHHHH-HH-HHHhcCCceEEEecCCCCCCCCe
Q 017068          290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP---EVIDK-VS-RIANTVRWTAAVHDKEPGSNGRE  364 (378)
Q Consensus       290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~---~~~~~-~~-~~~~~l~W~~~~~~~~~~~~~~e  364 (378)
                      |-|. .+.++.       +-.-..++-.+-|.|||||+++++.-.   ..+.. +. +..+  .|++...-+-.+ ..-.
T Consensus       199 VF~~-ALi~~d-------k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~--gf~~~~~~~P~~-~v~N  267 (296)
T PLN03075        199 VFLA-ALVGMD-------KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR--GFEVLSVFHPTD-EVIN  267 (296)
T ss_pred             EEEe-cccccc-------cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC--CeEEEEEECCCC-Ccee
Confidence            9998 666553       112267999999999999999999532   22221 11 1122  777765332211 1345


Q ss_pred             EEEEEEecC
Q 017068          365 KILVATKSL  373 (378)
Q Consensus       365 ~~l~~~K~~  373 (378)
                      -+++++|.-
T Consensus       268 svi~~r~~~  276 (296)
T PLN03075        268 SVIIARKPG  276 (296)
T ss_pred             eEEEEEeec
Confidence            788888864

>PRK03612 spermidine synthase; Provisional

Probab=94.37  E-value=0.022  Score=60.49  Aligned_cols=125  Identities=16%  Similarity=0.168  Sum_probs=67.5

Q ss_pred             CCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh-cc------------cc-ccccccccCCCCCCcc
Q 017068          223 PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR-GL------------IG-VYHDWCEPFSTYPRTY  287 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR-Gl------------ig-~~~~w~~~f~typrty  287 (378)
                      .+-++|||+|||.|+.+..+++++- +-.|+-.|-. ..++.+-+. .+            +- +..|=.+-+...+++|
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f  374 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF  374 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence            4568899999999999887776541 1244445543 555544442 11            11 1112111122346799


Q ss_pred             ccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC-----CHHHHHHHHHHHhcCCceEE
Q 017068          288 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-----SPEVIDKVSRIANTVRWTAA  352 (378)
Q Consensus       288 DliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-----~~~~~~~~~~~~~~l~W~~~  352 (378)
                      |+|-++.. .... +. ..... -...+-++-|.|+|||.+++..     ..+...++.+..++....+.
T Consensus       375 DvIi~D~~-~~~~-~~-~~~L~-t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~  440 (521)
T PRK03612        375 DVIIVDLP-DPSN-PA-LGKLY-SVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT  440 (521)
T ss_pred             CEEEEeCC-CCCC-cc-hhccc-hHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence            99988621 1110 00 00000 0235567789999999999963     23444555555555544443

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=94.27  E-value=0.013  Score=53.21  Aligned_cols=120  Identities=20%  Similarity=0.257  Sum_probs=59.2

Q ss_pred             chHHHHHHHH--HHHHHhhh---hcCCCCeeEEEecCCcce--eeeeeccCCCeeEEEeccCCCCcc---hHHHHhh---
Q 017068          201 DSRRWRRRVA--YYKNTLNV---KLGTPAIRNIMDMNAFFG--GFAAALTSDPVWVMNVVPARKSST---LSVIYDR---  267 (378)
Q Consensus       201 d~~~w~~~v~--~Y~~~~~~---~~~~~~iR~vlDm~ag~g--~faa~L~~~~vwvmnv~p~~~~~~---l~~i~eR---  267 (378)
                      +...|...+-  .|+.....   ......-++||++|||+|  |++++.....-   .|+-+|.+..   ++...++   
T Consensus        17 G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~---~Vv~TD~~~~l~~l~~Ni~~N~~   93 (173)
T PF10294_consen   17 GGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAA---RVVLTDYNEVLELLRRNIELNGS   93 (173)
T ss_dssp             ------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-S---EEEEEE-S-HHHHHHHHHHTT--
T ss_pred             cEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCc---eEEEeccchhhHHHHHHHHhccc
Confidence            4677876553  46654210   012234569999999988  66666662122   3455665433   2333333   


Q ss_pred             ---cc-ccccccccccC--CC-CCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          268 ---GL-IGVYHDWCEPF--ST-YPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       268 ---Gl-ig~~~~w~~~f--~t-yprtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                         +- --.-.+|.+..  .. -++.||+|-++-|+-.-         -..+.++-=++++|.|+|-+++.-
T Consensus        94 ~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~---------~~~~~L~~tl~~ll~~~~~vl~~~  156 (173)
T PF10294_consen   94 LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDE---------ELFEPLVRTLKRLLKPNGKVLLAY  156 (173)
T ss_dssp             ------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-G---------GGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred             cccccccCcEEEecCcccccccccccCCEEEEecccchH---------HHHHHHHHHHHHHhCCCCEEEEEe
Confidence               11 23456897743  11 24689999999887631         223566666899999999988863

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=94.26  E-value=0.073  Score=49.85  Aligned_cols=117  Identities=16%  Similarity=0.227  Sum_probs=66.5

Q ss_pred             EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cch---HHHHh-hcccc----ccccccccCCCCCCccccccccCccc
Q 017068          227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STL---SVIYD-RGLIG----VYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l---~~i~e-RGlig----~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      +|||+|||-|.+=-.|++...-- -++-+|=+ ..+   |-|.| +|+--    ...|.-.+ -..+.-||+||--+.+.
T Consensus        70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~D  147 (227)
T KOG1271|consen   70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLD  147 (227)
T ss_pred             ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCcee
Confidence            89999999998877776554310 02333322 222   33343 45421    01111111 11247899999888876


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhc
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANT  346 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~  346 (378)
                      ... .+..+..-.+..++==++++|+|||.|+|..=.-+.+++.+....
T Consensus       148 Ais-Ls~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~  195 (227)
T KOG1271|consen  148 AIS-LSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFEN  195 (227)
T ss_pred             eee-cCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhc
Confidence            442 111112223356777789999999999999866666666554333

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=94.25  E-value=0.019  Score=59.51  Aligned_cols=101  Identities=17%  Similarity=0.219  Sum_probs=57.2

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----cc--c-cccccccccCCCC-CCcccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GL--I-GVYHDWCEPFSTY-PRTYDLIHVS  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gl--i-g~~~~w~~~f~ty-prtyDliH~~  293 (378)
                      .+||||+||.||.+.++...   .-   .|+..|.+ ..|..+-++    |+  + -+.+|... ++.+ +.+||.|-++
T Consensus       239 ~~VLD~cagpGgkt~~la~~~~~~g---~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~-l~~~~~~~fD~Vl~D  314 (431)
T PRK14903        239 LRVLDTCAAPGGKTTAIAELMKDQG---KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAER-LTEYVQDTFDRILVD  314 (431)
T ss_pred             CEEEEeCCCccHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhh-hhhhhhccCCEEEEC
Confidence            36999999999988776532   33   45666765 666555433    43  1 12233332 2322 4689998764


Q ss_pred             Ccccc---cc-CCCCCCCCC---C-------ccceeeeecccccCCCeEEEe
Q 017068          294 GIESL---IK-NPGSNKNSC---S-------LVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       294 ~~~~~---~~-~~~~~~~~c---~-------~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      ---|.   +. .|+.. ++-   .       -..+|-+.=+.|+|||.++.+
T Consensus       315 aPCsg~G~~~~~p~~~-~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs  365 (431)
T PRK14903        315 APCTSLGTARNHPEVL-RRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS  365 (431)
T ss_pred             CCCCCCccccCChHHH-HhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            22111   10 00000 000   0       025677888999999999997

>PHA03411 putative methyltransferase; Provisional

Probab=94.17  E-value=0.16  Score=50.11  Aligned_cols=79  Identities=13%  Similarity=0.100  Sum_probs=55.5

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-------------------H
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-------------------A   65 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-------------------~   65 (378)
                      .|+++++.     +.+++.|+++...+.+..+|+..++ .+++||+|+++-.+.|....+                   .
T Consensus        90 ~V~gVDis-----p~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~  163 (279)
T PHA03411         90 KIVCVELN-----PEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLG  163 (279)
T ss_pred             EEEEEECC-----HHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHH
Confidence            45555555     5899999887545778888887665 357899999987776643221                   2


Q ss_pred             HHHHHHhhcccCCcEEEEE--cCCCC
Q 017068           66 TYLIEVDRLLRPGGYLVIS--GPPVQ   89 (378)
Q Consensus        66 ~~L~Ev~RVLkPGG~lvis--~pp~~   89 (378)
                      ..++.+.++|+|+|.+.+.  +.|.+
T Consensus       164 ~~l~~v~~~L~p~G~~~~~yss~~~y  189 (279)
T PHA03411        164 QKFADVGYFIVPTGSAGFAYSGRPYY  189 (279)
T ss_pred             HHHhhhHheecCCceEEEEEeccccc
Confidence            5667888999999977653  44554

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=94.12  E-value=0.082  Score=52.62  Aligned_cols=73  Identities=27%  Similarity=0.488  Sum_probs=48.2

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCCeEEEEcccCCCCCCC-CceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPA-FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd-~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      .|+++|+.|     ..|+.|+++    +++..........+..+. +.||+|+|+- +   .+.-.....++.+.|||||
T Consensus       187 ~v~g~DiDp-----~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L---A~vl~~La~~~~~~lkpgg  257 (300)
T COG2264         187 KVVGVDIDP-----QAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L---AEVLVELAPDIKRLLKPGG  257 (300)
T ss_pred             eEEEecCCH-----HHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h---HHHHHHHHHHHHHHcCCCc
Confidence            366777665     667777664    454211112223344555 5999999875 3   2333478889999999999


Q ss_pred             EEEEEcC
Q 017068           80 YLVISGP   86 (378)
Q Consensus        80 ~lvis~p   86 (378)
                      ++++|+-
T Consensus       258 ~lIlSGI  264 (300)
T COG2264         258 RLILSGI  264 (300)
T ss_pred             eEEEEee
Confidence            9999985

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=94.03  E-value=0.055  Score=55.68  Aligned_cols=111  Identities=13%  Similarity=0.149  Sum_probs=63.9

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hcc--c-cccccccccCCCC---CCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGL--I-GVYHDWCEPFSTY---PRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGl--i-g~~~~w~~~f~ty---prtyDliH~~~  294 (378)
                      ..|||++||+|.|+..|.+..-   .|+..|.. ..++.+-+    .|+  + -+..|..+.++.+   ..+||+|-.+-
T Consensus       294 ~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP  370 (431)
T TIGR00479       294 ELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP  370 (431)
T ss_pred             CEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence            4799999999999999987643   44555554 45543332    233  1 1223333323322   24688877532


Q ss_pred             ccccccCCCCCCCCCC-ccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEE
Q 017068          295 IESLIKNPGSNKNSCS-LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAA  352 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~-~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~  352 (378)
                      -            |-. ...++-++.+ |+|+|.++++-+..++.+--+.+..-.|++.
T Consensus       371 P------------r~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~  416 (431)
T TIGR00479       371 P------------RKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT  416 (431)
T ss_pred             C------------CCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence            1            112 1334444444 7899999999777766554444444456654

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK04457 spermidine synthase; Provisional

Probab=93.97  E-value=0.15  Score=49.43  Aligned_cols=75  Identities=11%  Similarity=0.081  Sum_probs=49.0

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc-C-----CCeEEEEcccCC-CCCCCCceeEEEecCccc--cccC--ChHHHHHHHhh
Q 017068            5 NILTLSFAPRDSHKAQIQFALER-G-----IPAFVAMLGTRR-LPFPAFSFDIVHCSRCLI--PFTA--YNATYLIEVDR   73 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er-g-----~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~--hw~~--~~~~~L~Ev~R   73 (378)
                      .|+++++.     +++++.|++. +     ..+.+.++|+.. ++-..++||+|++.. +.  ..+.  ....+++++.+
T Consensus        92 ~v~~VEid-----p~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~-~~~~~~~~~l~t~efl~~~~~  165 (262)
T PRK04457         92 RQTAVEIN-----PQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG-FDGEGIIDALCTQPFFDDCRN  165 (262)
T ss_pred             eEEEEECC-----HHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-CCCCCCccccCcHHHHHHHHH
Confidence            45666665     5889998885 2     224567777532 232246899999742 21  1111  11389999999


Q ss_pred             cccCCcEEEEEc
Q 017068           74 LLRPGGYLVISG   85 (378)
Q Consensus        74 VLkPGG~lvis~   85 (378)
                      +|+|||.+++..
T Consensus       166 ~L~pgGvlvin~  177 (262)
T PRK04457        166 ALSSDGIFVVNL  177 (262)
T ss_pred             hcCCCcEEEEEc
Confidence            999999999853

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=93.91  E-value=0.18  Score=49.95  Aligned_cols=162  Identities=18%  Similarity=0.214  Sum_probs=87.7

Q ss_pred             cchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHh-------hcc
Q 017068          200 ADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYD-------RGL  269 (378)
Q Consensus       200 ~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~e-------RGl  269 (378)
                      -.|+.|-..|-.=.+...  ...+.  -++|+|||+|.-+-+|+..  +.   -|.++|-+ ..+.++-|       .|-
T Consensus       128 pETEE~V~~Vid~~~~~~--~~~~~--~ildlgtGSGaIslsll~~L~~~---~v~AiD~S~~Ai~La~eN~qr~~l~g~  200 (328)
T KOG2904|consen  128 PETEEWVEAVIDALNNSE--HSKHT--HILDLGTGSGAISLSLLHGLPQC---TVTAIDVSKAAIKLAKENAQRLKLSGR  200 (328)
T ss_pred             ccHHHHHHHHHHHHhhhh--hcccc--eEEEecCCccHHHHHHHhcCCCc---eEEEEeccHHHHHHHHHHHHHHhhcCc
Confidence            358999998865443221  22222  7999999999888777532  22   23455543 44443333       344


Q ss_pred             ccccccc--cccCCCCC---CccccccccCccccccC-----CCC----------CCCCCC--ccceeeeecccccCCCe
Q 017068          270 IGVYHDW--CEPFSTYP---RTYDLIHVSGIESLIKN-----PGS----------NKNSCS--LVDLMVEMDRMLRPEGT  327 (378)
Q Consensus       270 ig~~~~w--~~~f~typ---rtyDliH~~~~~~~~~~-----~~~----------~~~~c~--~~~~l~EmDRiLRPgG~  327 (378)
                      |++.|.-  -+.|-+||   ..+|+|-|+--...-.|     +++          .+..|.  +-.+..=.-|.|+|||+
T Consensus       201 i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~  280 (328)
T KOG2904|consen  201 IEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGF  280 (328)
T ss_pred             eEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCe
Confidence            7777662  33355666   79999888743221110     000          011111  11444556799999999


Q ss_pred             EEEeCC-----HHHHHHHHHH-HhcCCceEEEecCCCCCCCCeEEEEEEe
Q 017068          328 VVVRDS-----PEVIDKVSRI-ANTVRWTAAVHDKEPGSNGREKILVATK  371 (378)
Q Consensus       328 ~ii~d~-----~~~~~~~~~~-~~~l~W~~~~~~~~~~~~~~e~~l~~~K  371 (378)
                      +++.-.     ...+..+..- .+.--|.+.+. .+  -.+.+++++..+
T Consensus       281 ~~le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~-~D--f~~~~Rfv~i~r  327 (328)
T KOG2904|consen  281 EQLELVERKEHSYLVRIWMISLKDDSNGKAAVV-SD--FAGRPRFVIIHR  327 (328)
T ss_pred             EEEEecccccCcHHHHHHHHhchhhccchhhee-ec--ccCCcceEEEEe
Confidence            999732     2344444333 33333444332 22  246778877654

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=93.88  E-value=0.16  Score=47.65  Aligned_cols=76  Identities=26%  Similarity=0.345  Sum_probs=53.9

Q ss_pred             cCCCCChHHHHHHHHH----cCCC--eEEEEcccCCCCCCCCceeEEEecCc-----cccccC--ChHHHHHHHhhcccC
Q 017068           11 FAPRDSHKAQIQFALE----RGIP--AFVAMLGTRRLPFPAFSFDIVHCSRC-----LIPFTA--YNATYLIEVDRLLRP   77 (378)
Q Consensus        11 ~ap~D~se~~vq~A~e----rg~~--~~~~v~dae~LPfpd~SFD~V~cs~~-----l~hw~~--~~~~~L~Ev~RVLkP   77 (378)
                      +...|.|+..|..|+.    ++.+  +.|.++|+..-.|-.+.||+|+---+     |+.-..  ....++.-+.+.|+|
T Consensus        94 L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~  173 (227)
T KOG1271|consen   94 LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSP  173 (227)
T ss_pred             ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCC
Confidence            4567888888887765    4666  78899998777888999999963222     221111  112577889999999


Q ss_pred             CcEEEEEcC
Q 017068           78 GGYLVISGP   86 (378)
Q Consensus        78 GG~lvis~p   86 (378)
                      ||.|+|+.=
T Consensus       174 ~gifvItSC  182 (227)
T KOG1271|consen  174 GGIFVITSC  182 (227)
T ss_pred             CcEEEEEec
Confidence            999999864

>PLN02366 spermidine synthase

Probab=93.87  E-value=0.099  Score=52.11  Aligned_cols=107  Identities=18%  Similarity=0.213  Sum_probs=57.1

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh------cc----cc-ccccccccCCCC-CCc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR------GL----IG-VYHDWCEPFSTY-PRT  286 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR------Gl----ig-~~~~w~~~f~ty-prt  286 (378)
                      .....-++||++|||.|+.+..+++++- +..|+-++-. ..+.++-+.      |+    +- +..|=.+-.... ++.
T Consensus        87 ~~~~~pkrVLiIGgG~G~~~rellk~~~-v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~  165 (308)
T PLN02366         87 CSIPNPKKVLVVGGGDGGVLREIARHSS-VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGT  165 (308)
T ss_pred             hhCCCCCeEEEEcCCccHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCC
Confidence            3345678999999999999988887641 2333333322 222222111      11    11 111211101122 368


Q ss_pred             cccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          287 YDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       287 yDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ||+|-++. +...    .+...---..++-.+-|.|+|||.++...
T Consensus       166 yDvIi~D~-~dp~----~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        166 YDAIIVDS-SDPV----GPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             CCEEEEcC-CCCC----CchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            99998753 2211    11000001356678899999999998753

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=93.74  E-value=0.14  Score=51.47  Aligned_cols=68  Identities=10%  Similarity=0.108  Sum_probs=48.1

Q ss_pred             eEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068            6 ILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY   80 (378)
Q Consensus         6 v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~   80 (378)
                      |+++++.     +.+++.|+++    |.. +.+..+|+...+.+.+.||+|++...+.+       ....+.++|+|||.
T Consensus       108 VvgVDis-----~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~  175 (322)
T PRK13943        108 VVSVEYS-----RKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGR  175 (322)
T ss_pred             EEEEECC-----HHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCchHH-------hHHHHHHhcCCCCE
Confidence            5666555     5777777663    443 56677887776666688999998765433       23457889999999


Q ss_pred             EEEEc
Q 017068           81 LVISG   85 (378)
Q Consensus        81 lvis~   85 (378)
                      +++..
T Consensus       176 Lvv~~  180 (322)
T PRK13943        176 VIVPI  180 (322)
T ss_pred             EEEEe
Confidence            98854

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=93.73  E-value=0.1  Score=49.74  Aligned_cols=70  Identities=17%  Similarity=0.254  Sum_probs=47.9

Q ss_pred             CChHHHHHHHHHcCCC-----eEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEE
Q 017068           15 DSHKAQIQFALERGIP-----AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVIS   84 (378)
Q Consensus        15 D~se~~vq~A~erg~~-----~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis   84 (378)
                      +..+..++.|++.-.+     ..+...+.+..--+.+.||+|.|-.|+-|.+|.+ -.+|+-....|+|||.+++-
T Consensus        85 Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvK  160 (218)
T PF05891_consen   85 EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVK  160 (218)
T ss_dssp             ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence            4567888888864211     3445556665544468999999999999999976 68999999999999999983

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=93.57  E-value=0.035  Score=54.30  Aligned_cols=93  Identities=16%  Similarity=0.218  Sum_probs=64.7

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-----cc-------ccccccccCCCCCCccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-----IG-------VYHDWCEPFSTYPRTYDLIHV  292 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-----ig-------~~~~w~~~f~typrtyDliH~  292 (378)
                      |+|||+|||.|-+.-.|....-   +|+-.|.+ .++.++-+.--     .+       ..|.=-|.+-   -.||.|.|
T Consensus        91 ~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvc  164 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVC  164 (282)
T ss_pred             ceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeee
Confidence            6699999999999988888876   77888887 67766655411     11       1111112211   23999999


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      +-++.+.++         ...++-=+=+.|+|||-++|+.-
T Consensus       165 sevleHV~d---------p~~~l~~l~~~lkP~G~lfitti  196 (282)
T KOG1270|consen  165 SEVLEHVKD---------PQEFLNCLSALLKPNGRLFITTI  196 (282)
T ss_pred             HHHHHHHhC---------HHHHHHHHHHHhCCCCceEeeeh
Confidence            988887762         23455566789999999999863

>PHA03412 putative methyltransferase; Provisional

Probab=93.54  E-value=0.021  Score=55.05  Aligned_cols=98  Identities=12%  Similarity=0.119  Sum_probs=56.4

Q ss_pred             eEEEecCCcceeeeeeccCC----CeeEEEeccCCCC-cchHHHHhhcccc---ccccccccCCCCCCccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD----PVWVMNVVPARKS-STLSVIYDRGLIG---VYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~----~vwvmnv~p~~~~-~~l~~i~eRGlig---~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      ..|||+|||+|.|+.++..+    +  ..+|..++-. ..+..+.+. +..   ...|... + ..+.+||+|-+.--|.
T Consensus        51 grVLDlG~GSG~Lalala~~~~~~~--~~~V~aVEID~~Al~~Ar~n-~~~~~~~~~D~~~-~-~~~~~FDlIIsNPPY~  125 (241)
T PHA03412         51 GSVVDLCAGIGGLSFAMVHMMMYAK--PREIVCVELNHTYYKLGKRI-VPEATWINADALT-T-EFDTLFDMAISNPPFG  125 (241)
T ss_pred             CEEEEccChHHHHHHHHHHhcccCC--CcEEEEEECCHHHHHHHHhh-ccCCEEEEcchhc-c-cccCCccEEEECCCCC
Confidence            37999999999999877542    1  1256666654 555544432 211   1222222 1 1245899999998877


Q ss_pred             cccCCCCCCCC---CCccc-eeeeecccccCCCeEEE
Q 017068          298 LIKNPGSNKNS---CSLVD-LMVEMDRMLRPEGTVVV  330 (378)
Q Consensus       298 ~~~~~~~~~~~---c~~~~-~l~EmDRiLRPgG~~ii  330 (378)
                      .....+. ..+   ..+.. ++-..-|+||||++ |+
T Consensus       126 ~~~~~d~-~ar~~g~~~~~~li~~A~~Ll~~G~~-IL  160 (241)
T PHA03412        126 KIKTSDF-KGKYTGAEFEYKVIERASQIARQGTF-II  160 (241)
T ss_pred             Ccccccc-CCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence            5542111 122   22223 44455678999887 55

>PRK13699 putative methylase; Provisional

Probab=93.44  E-value=0.11  Score=49.35  Aligned_cols=52  Identities=13%  Similarity=0.131  Sum_probs=33.0

Q ss_pred             EEEcccCCC--CCCCCceeEEEecC----ccccccC----------ChHHHHHHHhhcccCCcEEEEE
Q 017068           33 VAMLGTRRL--PFPAFSFDIVHCSR----CLIPFTA----------YNATYLIEVDRLLRPGGYLVIS   84 (378)
Q Consensus        33 ~~v~dae~L--Pfpd~SFD~V~cs~----~l~hw~~----------~~~~~L~Ev~RVLkPGG~lvis   84 (378)
                      +..+|+.++  .+||+|+|+|+..=    ...+...          --...+.|+.|||||||.+++.
T Consensus         4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if   71 (227)
T PRK13699          4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF   71 (227)
T ss_pred             EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            345565333  57889999988651    0001000          0136889999999999999864

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=93.28  E-value=0.024  Score=56.87  Aligned_cols=87  Identities=20%  Similarity=0.114  Sum_probs=48.6

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHh----hccc--c-ccccccccCCCCCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYD----RGLI--G-VYHDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~e----RGli--g-~~~~w~~~f~typrtyDliH~~~  294 (378)
                      ..|||+|||+|.+++.|...   .-.   |+-.|.. ..+..+-+    .|+-  - +..|-.+..+ ....||+|.++.
T Consensus        82 ~~VLDIG~GtG~~a~~LA~~~~~~g~---VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~-~~~~fD~Ii~~~  157 (322)
T PRK13943         82 MRVLEIGGGTGYNAAVMSRVVGEKGL---VVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP-EFAPYDVIFVTV  157 (322)
T ss_pred             CEEEEEeCCccHHHHHHHHhcCCCCE---EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc-ccCCccEEEECC
Confidence            47999999999999888642   111   2333433 44433332    3431  1 1223222222 225699998853


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      -..               .+.-.+-|.|+|||.+++-
T Consensus       158 g~~---------------~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        158 GVD---------------EVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             chH---------------HhHHHHHHhcCCCCEEEEE
Confidence            222               1222356799999998874

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=93.27  E-value=0.23  Score=48.31  Aligned_cols=66  Identities=21%  Similarity=0.240  Sum_probs=51.7

Q ss_pred             CChHHHHHHHHHc----CC-C-eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcCC
Q 017068           15 DSHKAQIQFALER----GI-P-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP   87 (378)
Q Consensus        15 D~se~~vq~A~er----g~-~-~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~pp   87 (378)
                      +..+...+.|+++    |+ . +.+...|..+.-+++ .||+|+.     ..++++ .++..+..+|||||.+++-.|.
T Consensus       126 E~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~L-----Dmp~PW-~~le~~~~~Lkpgg~~~~y~P~  197 (256)
T COG2519         126 EIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFL-----DLPDPW-NVLEHVSDALKPGGVVVVYSPT  197 (256)
T ss_pred             EecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEE-----cCCChH-HHHHHHHHHhCCCcEEEEEcCC
Confidence            3457888888886    32 2 556677877766666 9999974     668888 9999999999999999998773

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=93.19  E-value=0.17  Score=50.31  Aligned_cols=72  Identities=22%  Similarity=0.385  Sum_probs=47.3

Q ss_pred             CCeEEEecCCCCChHHHHHHHHH----cCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068            4 ENILTLSFAPRDSHKAQIQFALE----RGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~e----rg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      +.|+|+|+.|     ..++.|++    +|+...+.+..  ...++...||+|+++-..    +.-...+..+.++|+|||
T Consensus       185 ~~v~a~DiDp-----~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~~----~vL~~l~~~~~~~l~~~G  253 (295)
T PF06325_consen  185 KKVVAIDIDP-----LAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANILA----DVLLELAPDIASLLKPGG  253 (295)
T ss_dssp             SEEEEEESSC-----HHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES-H----HHHHHHHHHCHHHEEEEE
T ss_pred             CeEEEecCCH-----HHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCCH----HHHHHHHHHHHHhhCCCC
Confidence            4688999988     44555555    46655444432  234456999999986432    122366778999999999


Q ss_pred             EEEEEcC
Q 017068           80 YLVISGP   86 (378)
Q Consensus        80 ~lvis~p   86 (378)
                      +|++|+-
T Consensus       254 ~lIlSGI  260 (295)
T PF06325_consen  254 YLILSGI  260 (295)
T ss_dssp             EEEEEEE
T ss_pred             EEEEccc
Confidence            9999985

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=93.19  E-value=0.51  Score=49.18  Aligned_cols=91  Identities=16%  Similarity=0.104  Sum_probs=53.8

Q ss_pred             CCChHHHHHHHHHc----CCCeEEEEcccCCCCCC-CCceeEEEecCcccccc--------------------CCh----
Q 017068           14 RDSHKAQIQFALER----GIPAFVAMLGTRRLPFP-AFSFDIVHCSRCLIPFT--------------------AYN----   64 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~~~~~~v~dae~LPfp-d~SFD~V~cs~~l~hw~--------------------~~~----   64 (378)
                      .|+|+.+++.|+++    +..+.+..+|.....++ +++||+|+|+-=.+.-.                    +++    
T Consensus       281 VDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~y  360 (423)
T PRK14966        281 SDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCI  360 (423)
T ss_pred             EECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHH
Confidence            34456888888774    45567777886544443 46899999964211100                    000    


Q ss_pred             HHHHHHHhhcccCCcEEEEEcCCCCCCccchHHHHHHHHHHHhceee
Q 017068           65 ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYEL  111 (378)
Q Consensus        65 ~~~L~Ev~RVLkPGG~lvis~pp~~~~~~~~~w~~l~~l~~~lcw~~  111 (378)
                      ...+.++.+.|+|||.+++.... +     + -+.+..+.....|..
T Consensus       361 r~Ii~~a~~~LkpgG~lilEiG~-~-----Q-~e~V~~ll~~~Gf~~  400 (423)
T PRK14966        361 RTLAQGAPDRLAEGGFLLLEHGF-D-----Q-GAAVRGVLAENGFSG  400 (423)
T ss_pred             HHHHHHHHHhcCCCcEEEEEECc-c-----H-HHHHHHHHHHCCCcE
Confidence            15666778899999999875431 1     1 134555555544543

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=93.13  E-value=0.1  Score=50.04  Aligned_cols=119  Identities=15%  Similarity=0.183  Sum_probs=82.3

Q ss_pred             hcCCCCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhhcc-----ccccccccccCCCCCCcccccc
Q 017068          219 KLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGL-----IGVYHDWCEPFSTYPRTYDLIH  291 (378)
Q Consensus       219 ~~~~~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eRGl-----ig~~~~w~~~f~typrtyDliH  291 (378)
                      .|.....|.|.|+|||.|--...|..+ |.=  -|.-.|++ ++|.-+.+|+.     .|=+++||-.     +..|||.
T Consensus        25 ~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A--~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~-----~~~dllf   97 (257)
T COG4106          25 RVPLERPRRVVDLGCGPGNSTELLARRWPDA--VITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPE-----QPTDLLF   97 (257)
T ss_pred             hCCccccceeeecCCCCCHHHHHHHHhCCCC--eEeeccCCHHHHHHHHHhCCCCceecccHhhcCCC-----Cccchhh
Confidence            356678999999999999888877643 220  13566777 99999999998     5888999942     6679999


Q ss_pred             ccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH----HHHHHHHHHHhcCCceEEE
Q 017068          292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----EVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~----~~~~~~~~~~~~l~W~~~~  353 (378)
                      ++-+|.-+-     .+--.+..+|    --|+|||.+-+.-+.    ..-.-|.+.++..-|....
T Consensus        98 aNAvlqWlp-----dH~~ll~rL~----~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l  154 (257)
T COG4106          98 ANAVLQWLP-----DHPELLPRLV----SQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQEL  154 (257)
T ss_pred             hhhhhhhcc-----ccHHHHHHHH----HhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhh
Confidence            998887442     2322222333    358999999998432    2334466677776776544

>PRK03612 spermidine synthase; Provisional

Probab=93.12  E-value=0.14  Score=54.51  Aligned_cols=76  Identities=18%  Similarity=0.176  Sum_probs=50.7

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc------------CCCeEEEEcccCC-CCCCCCceeEEEecCccccccCC-----hHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALER------------GIPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAY-----NAT   66 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er------------g~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~-----~~~   66 (378)
                      .|+++++.     +++++.|++.            ...+.+..+|+.+ +...+++||+|++... .+....     ...
T Consensus       323 ~v~~VEid-----~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~-~~~~~~~~~L~t~e  396 (521)
T PRK03612        323 QVTLVDLD-----PAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLP-DPSNPALGKLYSVE  396 (521)
T ss_pred             eEEEEECC-----HHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCC-CCCCcchhccchHH
Confidence            45555555     6899999883            1235667777654 3334579999998643 222111     125


Q ss_pred             HHHHHhhcccCCcEEEEEcC
Q 017068           67 YLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        67 ~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +++++.|.|||||.+++...
T Consensus       397 f~~~~~~~L~pgG~lv~~~~  416 (521)
T PRK03612        397 FYRLLKRRLAPDGLLVVQST  416 (521)
T ss_pred             HHHHHHHhcCCCeEEEEecC
Confidence            78999999999999998654

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=93.01  E-value=0.35  Score=50.20  Aligned_cols=128  Identities=16%  Similarity=0.251  Sum_probs=72.1

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc--c-cccccccccCCC--C-CCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL--I-GVYHDWCEPFST--Y-PRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--i-g~~~~w~~~f~t--y-prtyDliH~~~  294 (378)
                      ..|||+|||+|.|+.+|..+..   .|+..|.+ .++..+-+.    |+  + =...|+.+.++.  + +.+||+|-++-
T Consensus       299 ~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP  375 (443)
T PRK13168        299 DRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP  375 (443)
T ss_pred             CEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence            4799999999999999987753   56777766 666554432    33  1 122333332222  2 35799987642


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHH-HHHHHHHHhcCCceEEE---ecCCCCCCCCeEEEEEE
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEV-IDKVSRIANTVRWTAAV---HDKEPGSNGREKILVAT  370 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~-~~~~~~~~~~l~W~~~~---~~~~~~~~~~e~~l~~~  370 (378)
                                  .+..+..++-.+-+ |.|++.++++=+..+ -..++.+.+ --|++..   .|-=+.+..=|-|.+-+
T Consensus       376 ------------Pr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l~~i~~~DmFP~T~HvE~v~lL~  441 (443)
T PRK13168        376 ------------PRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRLKRAGMLDMFPHTGHVESMALFE  441 (443)
T ss_pred             ------------CCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEEEEEEEeccCCCCCcEEEEEEEE
Confidence                        22223344433334 589999999955554 344555533 2366543   44433333335554443

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=92.93  E-value=0.067  Score=48.97  Aligned_cols=42  Identities=26%  Similarity=0.431  Sum_probs=35.0

Q ss_pred             CCceeEEEecCcccccc--------CC--hHHHHHHHhhcccCCcEEEEEcC
Q 017068           45 AFSFDIVHCSRCLIPFT--------AY--NATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        45 d~SFD~V~cs~~l~hw~--------~~--~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .++||.+.|..++.|..        ++  +.++++++.|+|||||.|+++.|
T Consensus        61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP  112 (177)
T PF03269_consen   61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP  112 (177)
T ss_pred             hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence            46899999988888873        11  23899999999999999999988

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=92.90  E-value=0.024  Score=58.33  Aligned_cols=124  Identities=17%  Similarity=0.199  Sum_probs=64.8

Q ss_pred             eEEEecCCcceeeeeecc-CCCeeEEEeccCCCC-cchHHHHh----hccc-c----ccccccccCCCC---CCcccccc
Q 017068          226 RNIMDMNAFFGGFAAALT-SDPVWVMNVVPARKS-STLSVIYD----RGLI-G----VYHDWCEPFSTY---PRTYDLIH  291 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~-~~~vwvmnv~p~~~~-~~l~~i~e----RGli-g----~~~~w~~~f~ty---prtyDliH  291 (378)
                      ++|||++||+|+|+-+.+ ...-   .|+.+|.+ ..+..+-+    -|+- .    +..|..+.+..+   .++||+|-
T Consensus       222 ~rVLDlfsgtG~~~l~aa~~ga~---~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi  298 (396)
T PRK15128        222 KRVLNCFSYTGGFAVSALMGGCS---QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_pred             CeEEEeccCCCHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence            679999999999985533 3232   34555654 44443322    2331 1    112222212222   35899999


Q ss_pred             ccCcc-ccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC------HHHHHHHHHHHhcCCceEEE
Q 017068          292 VSGIE-SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS------PEVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       292 ~~~~~-~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~------~~~~~~~~~~~~~l~W~~~~  353 (378)
                      ++--+ ..-+ .........+..++.-.-++|+|||.++....      ....+.+.+-+..-.-++++
T Consensus       299 lDPP~f~~~k-~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~  366 (396)
T PRK15128        299 MDPPKFVENK-SQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQF  366 (396)
T ss_pred             ECCCCCCCCh-HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEE
Confidence            87432 1100 00000002234444556689999999998542      23555556556666556554

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=92.87  E-value=0.2  Score=48.77  Aligned_cols=40  Identities=35%  Similarity=0.527  Sum_probs=33.3

Q ss_pred             ceeEEEecCccccccCCh---HHHHHHHhhcccCCcEEEEEcC
Q 017068           47 SFDIVHCSRCLIPFTAYN---ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        47 SFD~V~cs~~l~hw~~~~---~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .||+|++.+|+.-...+.   ..+++.+.+.|||||.|++.+-
T Consensus       158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~  200 (256)
T PF01234_consen  158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV  200 (256)
T ss_dssp             SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            599999999998776543   4899999999999999998643

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=92.82  E-value=0.087  Score=51.07  Aligned_cols=96  Identities=16%  Similarity=0.248  Sum_probs=62.8

Q ss_pred             EEEecCCcceeeeeeccCC--C--eeEEEeccCC-CCcchHHHHhhcc------cccccccccc---CCCCCCccccccc
Q 017068          227 NIMDMNAFFGGFAAALTSD--P--VWVMNVVPAR-KSSTLSVIYDRGL------IGVYHDWCEP---FSTYPRTYDLIHV  292 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~--~--vwvmnv~p~~-~~~~l~~i~eRGl------ig~~~~w~~~---f~typrtyDliH~  292 (378)
                      +||.+|||.|.----|+.-  +  +-+   -.-| +++.+.++-++--      -+..+|.+.+   -|..+.+.|.|-+
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v---~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~  150 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKV---YACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITL  150 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEE---EEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEE
Confidence            8999999999765555421  2  322   3333 2244443332221      2344444443   2344589999999


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      -.++|...       .-.+...+-.+-|+|+|||.+++||
T Consensus       151 IFvLSAi~-------pek~~~a~~nl~~llKPGG~llfrD  183 (264)
T KOG2361|consen  151 IFVLSAIH-------PEKMQSVIKNLRTLLKPGGSLLFRD  183 (264)
T ss_pred             EEEEeccC-------hHHHHHHHHHHHHHhCCCcEEEEee
Confidence            99999774       3346788889999999999999997

>PLN02476 O-methyltransferase

Probab=92.31  E-value=0.079  Score=52.17  Aligned_cols=133  Identities=11%  Similarity=0.118  Sum_probs=72.9

Q ss_pred             CCCeeEEEecCCcceeeeeeccC----CC-eeEEEeccCCCCcchHHHHhhccc---c-ccccccccCCCC-----CCcc
Q 017068          222 TPAIRNIMDMNAFFGGFAAALTS----DP-VWVMNVVPARKSSTLSVIYDRGLI---G-VYHDWCEPFSTY-----PRTY  287 (378)
Q Consensus       222 ~~~iR~vlDm~ag~g~faa~L~~----~~-vwvmnv~p~~~~~~l~~i~eRGli---g-~~~~w~~~f~ty-----prty  287 (378)
                      ..+-++||++|+++|..+.+|..    .. |.++=.-|....-.-+.+-+-|+-   = ...+-.+.++..     +.+|
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F  195 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY  195 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence            34578999999999998887753    22 333222221111111333344441   1 011112222221     3579


Q ss_pred             ccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-------------HH--HHHHH-HHHHhcCCceE
Q 017068          288 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-------------PE--VIDKV-SRIANTVRWTA  351 (378)
Q Consensus       288 DliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-------------~~--~~~~~-~~~~~~l~W~~  351 (378)
                      |+|-.+.-=.            +...++-+.=++|||||.+|+.+.             ..  .+.++ +.+...=+++.
T Consensus       196 D~VFIDa~K~------------~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~  263 (278)
T PLN02476        196 DFAFVDADKR------------MYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSI  263 (278)
T ss_pred             CEEEECCCHH------------HHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEE
Confidence            9988763322            224556666689999999999742             11  12222 33466667888


Q ss_pred             EEecCCCCCCCCeEEEEEEec
Q 017068          352 AVHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       352 ~~~~~~~~~~~~e~~l~~~K~  372 (378)
                      .+...      .+++++++|+
T Consensus       264 ~llPi------gDGl~i~~K~  278 (278)
T PLN02476        264 SMVPI------GDGMTICRKR  278 (278)
T ss_pred             EEEEe------CCeeEEEEEC
Confidence            77654      3578998885

>TIGR00417 speE spermidine synthase

Probab=92.30  E-value=0.26  Score=47.69  Aligned_cols=71  Identities=13%  Similarity=0.125  Sum_probs=44.8

Q ss_pred             CChHHHHHHHHHcC---------CCeEEEEcccCC-CCCCCCceeEEEecCccccccCC----hHHHHHHHhhcccCCcE
Q 017068           15 DSHKAQIQFALERG---------IPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAY----NATYLIEVDRLLRPGGY   80 (378)
Q Consensus        15 D~se~~vq~A~erg---------~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~----~~~~L~Ev~RVLkPGG~   80 (378)
                      |+++.+++.|++.-         ..+.+..+|+.+ +.-.++.||+|++... .+....    ...+++.+.+.|+|||.
T Consensus       103 eid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~  181 (270)
T TIGR00417       103 DIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDST-DPVGPAETLFTKEFYELLKKALNEDGI  181 (270)
T ss_pred             eCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCC-CCCCcccchhHHHHHHHHHHHhCCCcE
Confidence            44467888887741         123455555422 2223579999997543 222221    23678999999999999


Q ss_pred             EEEEcC
Q 017068           81 LVISGP   86 (378)
Q Consensus        81 lvis~p   86 (378)
                      +++...
T Consensus       182 lv~~~~  187 (270)
T TIGR00417       182 FVAQSE  187 (270)
T ss_pred             EEEcCC
Confidence            998744

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=92.29  E-value=0.36  Score=45.71  Aligned_cols=73  Identities=19%  Similarity=0.269  Sum_probs=47.0

Q ss_pred             CeEEEecCCCCChHHHHHHH-HHcCC----------------CeEEEEcccCCCCCCC-CceeEEEecCccccccCC-hH
Q 017068            5 NILTLSFAPRDSHKAQIQFA-LERGI----------------PAFVAMLGTRRLPFPA-FSFDIVHCSRCLIPFTAY-NA   65 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A-~erg~----------------~~~~~v~dae~LPfpd-~SFD~V~cs~~l~hw~~~-~~   65 (378)
                      +|++++++     +..|+.| .+++.                .+.+.++|.-.++-.+ +.||+|.=.-+++-++.. ..
T Consensus        61 ~VvGvDls-----~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~  135 (218)
T PF05724_consen   61 DVVGVDLS-----PTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRE  135 (218)
T ss_dssp             EEEEEES------HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHH
T ss_pred             eEEEEecC-----HHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHH
Confidence            56666666     5677776 34443                1245677876766443 479999855555444433 35


Q ss_pred             HHHHHHhhcccCCcEEE
Q 017068           66 TYLIEVDRLLRPGGYLV   82 (378)
Q Consensus        66 ~~L~Ev~RVLkPGG~lv   82 (378)
                      +..+.+.++|||||.++
T Consensus       136 ~Ya~~l~~ll~p~g~~l  152 (218)
T PF05724_consen  136 RYAQQLASLLKPGGRGL  152 (218)
T ss_dssp             HHHHHHHHCEEEEEEEE
T ss_pred             HHHHHHHHHhCCCCcEE
Confidence            89999999999999943

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=92.26  E-value=0.16  Score=47.95  Aligned_cols=133  Identities=18%  Similarity=0.258  Sum_probs=83.0

Q ss_pred             EEEecCCcceeeeeeccC-CCeeEEEeccCCCC-cch----HHHHhhccc----cc----ccc-cc--ccCCCCCCcccc
Q 017068          227 NIMDMNAFFGGFAAALTS-DPVWVMNVVPARKS-STL----SVIYDRGLI----GV----YHD-WC--EPFSTYPRTYDL  289 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~-~~vwvmnv~p~~~~-~~l----~~i~eRGli----g~----~~~-w~--~~f~typrtyDl  289 (378)
                      .||.+|+|+|--|+++.. .|-  +---|+|.. +.+    .-+.+.|+.    .+    -.+ |.  .+-+.++.+||.
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~  105 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA  105 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence            899999999987766642 121  134677765 222    234566662    12    222 32  223346789999


Q ss_pred             ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC---------------------------HHHHHHHHH
Q 017068          290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS---------------------------PEVIDKVSR  342 (378)
Q Consensus       290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~---------------------------~~~~~~~~~  342 (378)
                      |-|..++.--      .+.| .+-++-+.-|+|+|||.+++-++                           ..-++.|++
T Consensus       106 i~~~N~lHI~------p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~  178 (204)
T PF06080_consen  106 IFCINMLHIS------PWSA-VEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEA  178 (204)
T ss_pred             eeehhHHHhc------CHHH-HHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHH
Confidence            9998875321      1223 26788999999999999999531                           124677888


Q ss_pred             HHhcCCceEEEecCCCCCCCCeEEEEEEe
Q 017068          343 IANTVRWTAAVHDKEPGSNGREKILVATK  371 (378)
Q Consensus       343 ~~~~l~W~~~~~~~~~~~~~~e~~l~~~K  371 (378)
                      +|.+-..+.... .+ -| ...++||.+|
T Consensus       179 lA~~~GL~l~~~-~~-MP-ANN~~Lvfrk  204 (204)
T PF06080_consen  179 LAAAHGLELEED-ID-MP-ANNLLLVFRK  204 (204)
T ss_pred             HHHHCCCccCcc-cc-cC-CCCeEEEEeC
Confidence            888877776431 11 22 2357888876

The function of this family is unknown.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=91.85  E-value=0.099  Score=46.71  Aligned_cols=93  Identities=11%  Similarity=0.082  Sum_probs=51.6

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc----cccc-ccccccCCCCC-CccccccccCccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL----IGVY-HDWCEPFSTYP-RTYDLIHVSGIES  297 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl----ig~~-~~w~~~f~typ-rtyDliH~~~~~~  297 (378)
                      -.+|+|+|||.|.++..|+++.-   .|+..|.. ..++.+-++--    +-++ .|.. .++ ++ ..||.|-++--+.
T Consensus        14 ~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~-~~~-~~~~~~d~vi~n~Py~   88 (169)
T smart00650       14 GDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDAL-KFD-LPKLQPYKVVGNLPYN   88 (169)
T ss_pred             cCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECchh-cCC-ccccCCCEEEECCCcc
Confidence            34899999999999999998753   45666655 55555544421    1122 2222 222 23 3578775543222


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .        ..--+.. +++... +.++|++++..
T Consensus        89 ~--------~~~~i~~-~l~~~~-~~~~~~l~~q~  113 (169)
T smart00650       89 I--------STPILFK-LLEEPP-AFRDAVLMVQK  113 (169)
T ss_pred             c--------HHHHHHH-HHhcCC-CcceEEEEEEH
Confidence            1        0111222 334322 56899998874

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=91.80  E-value=0.23  Score=45.39  Aligned_cols=71  Identities=23%  Similarity=0.355  Sum_probs=47.4

Q ss_pred             CCCCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCCh----------HHHHHHHhhcc
Q 017068           12 APRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN----------ATYLIEVDRLL   75 (378)
Q Consensus        12 ap~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~----------~~~L~Ev~RVL   75 (378)
                      ...|+++.+++.|+++    |+.  +.+...|+.++|+++++||.|+|.-   +|-..-          ..+++|+.|+|
T Consensus        65 ~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l  141 (179)
T PF01170_consen   65 IGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVL  141 (179)
T ss_dssp             EEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHS
T ss_pred             EecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCEEEECc---chhhhccCHHHHHHHHHHHHHHHHHHC
Confidence            3456667788777775    443  5678889999999999999999863   332211          25689999999


Q ss_pred             cCCcEEEEEc
Q 017068           76 RPGGYLVISG   85 (378)
Q Consensus        76 kPGG~lvis~   85 (378)
                      ++...++++.
T Consensus       142 ~~~~v~l~~~  151 (179)
T PF01170_consen  142 KPRAVFLTTS  151 (179)
T ss_dssp             TTCEEEEEES
T ss_pred             CCCEEEEEEC
Confidence            9955555554

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PLN02366 spermidine synthase

Probab=91.63  E-value=1  Score=44.96  Aligned_cols=70  Identities=17%  Similarity=0.206  Sum_probs=45.6

Q ss_pred             CChHHHHHHHHHcC---------CCeEEEEcccCCC--CCCCCceeEEEecCccccccCC----hHHHHHHHhhcccCCc
Q 017068           15 DSHKAQIQFALERG---------IPAFVAMLGTRRL--PFPAFSFDIVHCSRCLIPFTAY----NATYLIEVDRLLRPGG   79 (378)
Q Consensus        15 D~se~~vq~A~erg---------~~~~~~v~dae~L--Pfpd~SFD~V~cs~~l~hw~~~----~~~~L~Ev~RVLkPGG   79 (378)
                      |+.+.+++.|++.-         ..+.+..+|+...  ..+++.||+|++-. ..++...    ...+++.+.+.|+|||
T Consensus       122 EiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgG  200 (308)
T PLN02366        122 EIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDS-SDPVGPAQELFEKPFFESVARALRPGG  200 (308)
T ss_pred             ECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcC-CCCCCchhhhhHHHHHHHHHHhcCCCc
Confidence            34468888888741         2356677775321  13467899999743 2332221    1367899999999999


Q ss_pred             EEEEEc
Q 017068           80 YLVISG   85 (378)
Q Consensus        80 ~lvis~   85 (378)
                      .++...
T Consensus       201 vlv~q~  206 (308)
T PLN02366        201 VVCTQA  206 (308)
T ss_pred             EEEECc
Confidence            998743

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=91.33  E-value=0.54  Score=44.77  Aligned_cols=72  Identities=14%  Similarity=0.201  Sum_probs=46.8

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCCC-C-----CCCCceeEEEecCccccccCChHHHHHHHh
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRL-P-----FPAFSFDIVHCSRCLIPFTAYNATYLIEVD   72 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~L-P-----fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~   72 (378)
                      .|+|+++.|     ..++.|++.    |+.  +.+..+++... +     .++++||+|++-.-    .+.-..++.++.
T Consensus        95 ~v~tiD~d~-----~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~----k~~y~~~~~~~~  165 (234)
T PLN02781         95 RITAIDIDK-----EAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD----KPNYVHFHEQLL  165 (234)
T ss_pred             EEEEEECCH-----HHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC----HHHHHHHHHHHH
Confidence            467777765     555555553    543  56677776432 2     23578999987421    122237889999


Q ss_pred             hcccCCcEEEEEc
Q 017068           73 RLLRPGGYLVISG   85 (378)
Q Consensus        73 RVLkPGG~lvis~   85 (378)
                      +.|||||.+++-.
T Consensus       166 ~ll~~GG~ii~dn  178 (234)
T PLN02781        166 KLVKVGGIIAFDN  178 (234)
T ss_pred             HhcCCCeEEEEEc
Confidence            9999999998743

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=91.27  E-value=0.38  Score=45.90  Aligned_cols=71  Identities=27%  Similarity=0.325  Sum_probs=48.0

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEE-ccc-CCCC-CCCCceeEEEecCccccccCChHHHHHHHhhcc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAM-LGT-RRLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLL   75 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v-~da-e~LP-fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVL   75 (378)
                      .++|+++.|     .+++.|++.    |+.  +.+.. +|+ +.|- +.+++||+|+.-    +....-..++.++.+.|
T Consensus        86 ~l~tiE~~~-----e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFID----adK~~yp~~le~~~~lL  156 (219)
T COG4122          86 RLTTIERDE-----ERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID----ADKADYPEYLERALPLL  156 (219)
T ss_pred             eEEEEeCCH-----HHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEe----CChhhCHHHHHHHHHHh
Confidence            477777774     677777764    443  33444 353 2222 668999999853    33333348999999999


Q ss_pred             cCCcEEEEE
Q 017068           76 RPGGYLVIS   84 (378)
Q Consensus        76 kPGG~lvis   84 (378)
                      ||||.+++-
T Consensus       157 r~GGliv~D  165 (219)
T COG4122         157 RPGGLIVAD  165 (219)
T ss_pred             CCCcEEEEe
Confidence            999999974

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=90.88  E-value=0.17  Score=51.03  Aligned_cols=54  Identities=11%  Similarity=0.125  Sum_probs=35.9

Q ss_pred             CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC--CHHHHHHHHHH
Q 017068          285 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD--SPEVIDKVSRI  343 (378)
Q Consensus       285 rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d--~~~~~~~~~~~  343 (378)
                      ..||++-|-.+|.+-- .+.+..    ...|.-+=+-|||||+||=.-  ...++.+++..
T Consensus       195 p~fDivScQF~~HYaF-etee~a----r~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~  250 (389)
T KOG1975|consen  195 PRFDIVSCQFAFHYAF-ETEESA----RIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG  250 (389)
T ss_pred             CCcceeeeeeeEeeee-ccHHHH----HHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence            3499999988876432 011122    345667788999999999874  44577777654

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=90.77  E-value=0.6  Score=45.58  Aligned_cols=45  Identities=27%  Similarity=0.521  Sum_probs=33.1

Q ss_pred             CCCCCCceeEEEecCcc----ccccCCh-HHHHHHHhhcccCCcEEEEEc
Q 017068           41 LPFPAFSFDIVHCSRCL----IPFTAYN-ATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        41 LPfpd~SFD~V~cs~~l----~hw~~~~-~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      |-+....||+|.|...-    .+|.|++ ..+++.+.|.|.|||+|++-.
T Consensus       160 l~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP  209 (288)
T KOG2899|consen  160 LDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP  209 (288)
T ss_pred             hhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence            34566789999985421    2345554 478999999999999999854

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=90.48  E-value=0.5  Score=45.83  Aligned_cols=66  Identities=20%  Similarity=0.244  Sum_probs=49.3

Q ss_pred             CChHHHHHHHHHc----CCC--eEEEEcccCCCCCC---CCceeEEEecCccccccCChHHHHHHHhhcc-cCCcEEEEE
Q 017068           15 DSHKAQIQFALER----GIP--AFVAMLGTRRLPFP---AFSFDIVHCSRCLIPFTAYNATYLIEVDRLL-RPGGYLVIS   84 (378)
Q Consensus        15 D~se~~vq~A~er----g~~--~~~~v~dae~LPfp---d~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVL-kPGG~lvis   84 (378)
                      |.++..++.|++.    |+.  +.+...|..+-.|+   ++.||+|+.     ..+++. .++..+.++| ||||++++-
T Consensus        72 E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp~Pw-~~i~~~~~~L~~~gG~i~~f  145 (247)
T PF08704_consen   72 EFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFL-----DLPDPW-EAIPHAKRALKKPGGRICCF  145 (247)
T ss_dssp             ESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEE-----ESSSGG-GGHHHHHHHE-EEEEEEEEE
T ss_pred             ccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEEE-----eCCCHH-HHHHHHHHHHhcCCceEEEE
Confidence            3567888888775    553  67778887655564   368999974     678888 9999999999 999999987


Q ss_pred             cC
Q 017068           85 GP   86 (378)
Q Consensus        85 ~p   86 (378)
                      .|
T Consensus       146 sP  147 (247)
T PF08704_consen  146 SP  147 (247)
T ss_dssp             ES
T ss_pred             CC
Confidence            77

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=90.31  E-value=0.59  Score=43.64  Aligned_cols=139  Identities=17%  Similarity=0.211  Sum_probs=79.5

Q ss_pred             cCccccccc--hHHHHHHHHH-HHHHhhhhcCCCCeeEEEecCCcceeeeeecc--CCCeeEEEeccCCCC----cchHH
Q 017068          193 NGYDVFEAD--SRRWRRRVAY-YKNTLNVKLGTPAIRNIMDMNAFFGGFAAALT--SDPVWVMNVVPARKS----STLSV  263 (378)
Q Consensus       193 ~~~~~F~~d--~~~w~~~v~~-Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~--~~~vwvmnv~p~~~~----~~l~~  263 (378)
                      +..+.|..|  ...=|+-|.. -+..|.  +..|.  .++|+|||+||-+--+.  ...-   -|...+..    .+++.
T Consensus         4 ipD~~F~~~~~~p~TK~EIRal~ls~L~--~~~g~--~l~DIGaGtGsi~iE~a~~~p~~---~v~AIe~~~~a~~~~~~   76 (187)
T COG2242           4 IPDELFERDEGGPMTKEEIRALTLSKLR--PRPGD--RLWDIGAGTGSITIEWALAGPSG---RVIAIERDEEALELIER   76 (187)
T ss_pred             CCchhhccCCCCCCcHHHHHHHHHHhhC--CCCCC--EEEEeCCCccHHHHHHHHhCCCc---eEEEEecCHHHHHHHHH
Confidence            344556666  2222344433 223343  55665  79999999999875443  3332   33555543    22222


Q ss_pred             HHhh-cc--ccccc-cccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC-CHHHHH
Q 017068          264 IYDR-GL--IGVYH-DWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVID  338 (378)
Q Consensus       264 i~eR-Gl--ig~~~-~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-~~~~~~  338 (378)
                      ..+| |+  +-+.. +=-+.++..| ++|-|.-++-             -+++.||--...-|||||-+|..- +.+...
T Consensus        77 N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg-------------~~i~~ile~~~~~l~~ggrlV~naitlE~~~  142 (187)
T COG2242          77 NAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGG-------------GNIEEILEAAWERLKPGGRLVANAITLETLA  142 (187)
T ss_pred             HHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECCC-------------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHH
Confidence            2222 21  01111 1123355556 7776665432             456778888888999999999985 567777


Q ss_pred             HHHHHHhcCCc-eEE
Q 017068          339 KVSRIANTVRW-TAA  352 (378)
Q Consensus       339 ~~~~~~~~l~W-~~~  352 (378)
                      .+-+..+.+.+ ++.
T Consensus       143 ~a~~~~~~~g~~ei~  157 (187)
T COG2242         143 KALEALEQLGGREIV  157 (187)
T ss_pred             HHHHHHHHcCCceEE
Confidence            77777777888 554

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=90.27  E-value=0.056  Score=54.37  Aligned_cols=112  Identities=15%  Similarity=0.226  Sum_probs=57.9

Q ss_pred             CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc---------------ccccc--cc-----ccccC
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG---------------LIGVY--HD-----WCEPF  280 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG---------------lig~~--~~-----w~~~f  280 (378)
                      .-.+||||+||=||=----...++  =.++-.|-. ..|+-+.+|=               +...+  .|     ..+.|
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            567999999998872111111111  122333433 4454455554               11111  11     12224


Q ss_pred             CCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe--CCHHHHHHHHH
Q 017068          281 STYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR--DSPEVIDKVSR  342 (378)
Q Consensus       281 ~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~--d~~~~~~~~~~  342 (378)
                      ++-.+.||+|=|--++.+--     ...-....+|--+-.-|||||+||..  |...++.++++
T Consensus       140 ~~~~~~FDvVScQFalHY~F-----ese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~  198 (331)
T PF03291_consen  140 PPRSRKFDVVSCQFALHYAF-----ESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLRE  198 (331)
T ss_dssp             SSTTS-EEEEEEES-GGGGG-----SSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred             cccCCCcceeehHHHHHHhc-----CCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHh
Confidence            43346999998877666433     11222346888899999999999998  44445455554

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=90.17  E-value=1.9  Score=43.02  Aligned_cols=102  Identities=18%  Similarity=0.219  Sum_probs=60.8

Q ss_pred             CCCCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccCChH----HHHHHHhhcccCCcEEEE
Q 017068           12 APRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNA----TYLIEVDRLLRPGGYLVI   83 (378)
Q Consensus        12 ap~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~----~~L~Ev~RVLkPGG~lvi   83 (378)
                      ...|++...|+.|++.    ++.......+..-.+-.+ +||+|+|+==+|.=.+-..    +.+++..+.|++||.|.+
T Consensus       186 tmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i  264 (300)
T COG2813         186 TLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI  264 (300)
T ss_pred             EEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence            3457888889998875    344322233333445555 9999999864432222222    788999999999999988


Q ss_pred             EcCCCCCCccchHHH-HHHHHHHHhceeeeccccceEEEe
Q 017068           84 SGPPVQWPKQDKEWA-DLQAVARALCYELIAVDGNTVIWK  122 (378)
Q Consensus        84 s~pp~~~~~~~~~w~-~l~~l~~~lcw~~~~~~~~~~iw~  122 (378)
                      ...   ...+   ++ .|.++..  .-+.+++.+...|++
T Consensus       265 Van---~~l~---y~~~L~~~Fg--~v~~la~~~gf~Vl~  296 (300)
T COG2813         265 VAN---RHLP---YEKKLKELFG--NVEVLAKNGGFKVLR  296 (300)
T ss_pred             EEc---CCCC---hHHHHHHhcC--CEEEEEeCCCEEEEE
Confidence            654   1111   11 2333322  245566666666654

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=90.12  E-value=0.45  Score=46.05  Aligned_cols=114  Identities=18%  Similarity=0.164  Sum_probs=73.5

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCC-CcchHHHHhhcc-cccccc--ccccCC--CCCCccccccccCcccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARK-SSTLSVIYDRGL-IGVYHD--WCEPFS--TYPRTYDLIHVSGIESL  298 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~-~~~l~~i~eRGl-ig~~~~--w~~~f~--typrtyDliH~~~~~~~  298 (378)
                      =|++||+|+-+|||.-.|+.+..=  =|...|- .+||--=+.-.. +=++-.  -+.-.+  .+ .-.|++.|+-.|..
T Consensus        80 ~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSFIS  156 (245)
T COG1189          80 GKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSFIS  156 (245)
T ss_pred             CCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeehhh
Confidence            478999999999999988877320  1244443 366632222222 111100  000000  11 13589999988886


Q ss_pred             ccCCCCCCCCCCccceeeeecccccCCCeEEEe-------------------CC---HHHHHHHHHHHhcCCceEEE
Q 017068          299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-------------------DS---PEVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-------------------d~---~~~~~~~~~~~~~l~W~~~~  353 (378)
                      ++            .+|-.+..+|-|+|-++..                   |+   ..+++++++.++.+.|.+.-
T Consensus       157 L~------------~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~g  221 (245)
T COG1189         157 LK------------LILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKG  221 (245)
T ss_pred             HH------------HHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEee
Confidence            64            6888999999999988875                   22   35888999999999999864

>PLN02823 spermine synthase

Probab=89.43  E-value=0.58  Score=47.28  Aligned_cols=110  Identities=17%  Similarity=0.230  Sum_probs=58.7

Q ss_pred             HHHHhh--hhcCCCCeeEEEecCCcceeeeeeccCCC-eeEEEeccCCCC-cchHHHHhhccccccc-------------
Q 017068          212 YKNTLN--VKLGTPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDRGLIGVYH-------------  274 (378)
Q Consensus       212 Y~~~~~--~~~~~~~iR~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~-~~l~~i~eRGlig~~~-------------  274 (378)
                      |-+.|.  +++....-++||-+|+|.|+.+..+++.+ +  ..|+-++-. ..++++-+.  ++..+             
T Consensus        89 YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~--~~v~~VEiD~~vv~lar~~--~~~~~~~~~dprv~v~~~  164 (336)
T PLN02823         89 YHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTV--EKVVMCDIDQEVVDFCRKH--LTVNREAFCDKRLELIIN  164 (336)
T ss_pred             HHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCC--CeEEEEECCHHHHHHHHHh--cccccccccCCceEEEEC
Confidence            444443  33444567899999999999988777643 4  234444433 344433222  11111             


Q ss_pred             cccccCCCCCCccccccccCccccccCCCCCCCCCC---ccceee-eecccccCCCeEEEe
Q 017068          275 DWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCS---LVDLMV-EMDRMLRPEGTVVVR  331 (378)
Q Consensus       275 ~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~---~~~~l~-EmDRiLRPgG~~ii~  331 (378)
                      |=..-+..-+..||+|-++ ++....    .+ -|.   -...+- .+.|.|+|||.+++.
T Consensus       165 Da~~~L~~~~~~yDvIi~D-~~dp~~----~~-~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        165 DARAELEKRDEKFDVIIGD-LADPVE----GG-PCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             hhHHHHhhCCCCccEEEec-CCCccc----cC-cchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            1000011224689999887 222211    00 010   012333 578999999999876

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=89.17  E-value=0.12  Score=48.62  Aligned_cols=132  Identities=18%  Similarity=0.281  Sum_probs=72.9

Q ss_pred             CCeeEEEecCCcceeeeeecc----C-CCeeEEEeccCCCCcchHHHHhhcc---ccc-cccccccCCCC-----CCccc
Q 017068          223 PAIRNIMDMNAFFGGFAAALT----S-DPVWVMNVVPARKSSTLSVIYDRGL---IGV-YHDWCEPFSTY-----PRTYD  288 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~faa~L~----~-~~vwvmnv~p~~~~~~l~~i~eRGl---ig~-~~~w~~~f~ty-----prtyD  288 (378)
                      .+-++||.+|+++|==|.+|.    + -.|+++-+-|....-.-+.+-.-|+   |-+ ..+..+.++..     +.+||
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD  123 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD  123 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence            467899999999985444443    2 2344444433222112233344455   222 22333333321     35899


Q ss_pred             cccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH-------------H--HHHH-HHHHHhcCCceEE
Q 017068          289 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-------------E--VIDK-VSRIANTVRWTAA  352 (378)
Q Consensus       289 liH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-------------~--~~~~-~~~~~~~l~W~~~  352 (378)
                      +|-.+.-=..|            ..++-..-+.|||||.+|+.+..             +  .+.+ .+.+.+.=+.+..
T Consensus       124 ~VFiDa~K~~y------------~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~  191 (205)
T PF01596_consen  124 FVFIDADKRNY------------LEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETV  191 (205)
T ss_dssp             EEEEESTGGGH------------HHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEE
T ss_pred             EEEEcccccch------------hhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEE
Confidence            99876443333            23444555899999999998631             1  1233 3445666678887


Q ss_pred             EecCCCCCCCCeEEEEEEec
Q 017068          353 VHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       353 ~~~~~~~~~~~e~~l~~~K~  372 (378)
                      +...      .+++++++|+
T Consensus       192 llpi------gdGl~l~~K~  205 (205)
T PF01596_consen  192 LLPI------GDGLTLARKR  205 (205)
T ss_dssp             EECS------TTEEEEEEE-
T ss_pred             EEEe------CCeeEEEEEC
Confidence            7754      4579999985

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK04148 hypothetical protein; Provisional

Probab=88.86  E-value=0.2  Score=44.36  Aligned_cols=88  Identities=15%  Similarity=0.225  Sum_probs=61.4

Q ss_pred             eEEEecCCccee-eeeeccCCCeeEEEeccCCCC-cchHHHHhhccccccccccccC-CCCCCccccccccCccccccCC
Q 017068          226 RNIMDMNAFFGG-FAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPF-STYPRTYDLIHVSGIESLIKNP  302 (378)
Q Consensus       226 R~vlDm~ag~g~-faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f-~typrtyDliH~~~~~~~~~~~  302 (378)
                      +.++|+|||+|. +|..|.+...   .|+..|.. ..++-+-++|+-.+..|+-++= .-| +.+|              
T Consensus        18 ~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y-~~a~--------------   79 (134)
T PRK04148         18 KKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIY-KNAK--------------   79 (134)
T ss_pred             CEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHH-hcCC--------------
Confidence            569999999995 9989998887   66777765 6688888888766666554421 100 2223              


Q ss_pred             CCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEe
Q 017068          303 GSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVH  354 (378)
Q Consensus       303 ~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~  354 (378)
                                 ++.+            +|-+.+.+..+.++++++.=++.+.
T Consensus        80 -----------liys------------irpp~el~~~~~~la~~~~~~~~i~  108 (134)
T PRK04148         80 -----------LIYS------------IRPPRDLQPFILELAKKINVPLIIK  108 (134)
T ss_pred             -----------EEEE------------eCCCHHHHHHHHHHHHHcCCCEEEE
Confidence                       3333            2345778888999999998888764

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=88.70  E-value=0.92  Score=40.44  Aligned_cols=72  Identities=8%  Similarity=-0.035  Sum_probs=47.4

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC---CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhh--cccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDR--LLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg---~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~R--VLkPGG   79 (378)
                      .|+++++.     +.+++.++++.   ..+.+..+|+.++++++..||.|+++- ..|...   ..+..+.+  .+.++|
T Consensus        37 ~v~~vE~~-----~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~-Py~~~~---~~i~~~l~~~~~~~~~  107 (169)
T smart00650       37 RVTAIEID-----PRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNL-PYNIST---PILFKLLEEPPAFRDA  107 (169)
T ss_pred             eEEEEECC-----HHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECC-CcccHH---HHHHHHHhcCCCcceE
Confidence            45566655     57888887763   246678889999999988899998754 344432   33333332  245888


Q ss_pred             EEEEEc
Q 017068           80 YLVISG   85 (378)
Q Consensus        80 ~lvis~   85 (378)
                      .|++-.
T Consensus       108 ~l~~q~  113 (169)
T smart00650      108 VLMVQK  113 (169)
T ss_pred             EEEEEH
Confidence            888753

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=88.45  E-value=0.2  Score=42.95  Aligned_cols=40  Identities=25%  Similarity=0.590  Sum_probs=27.2

Q ss_pred             ceeEEEecCcc--cc--ccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           47 SFDIVHCSRCL--IP--FTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        47 SFD~V~cs~~l--~h--w~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .||+|.|-.+.  +|  |.|.+ ..+++.+.+.|+|||.|++-..
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ   45 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ   45 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence            38999986543  22  23333 4688999999999999999654

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PRK11524 putative methyltransferase; Provisional

Probab=88.40  E-value=0.31  Score=47.54  Aligned_cols=55  Identities=15%  Similarity=0.182  Sum_probs=35.7

Q ss_pred             EEEEcccCCC--CCCCCceeEEEec--Ccc--------ccccCC-----hHHHHHHHhhcccCCcEEEEEcC
Q 017068           32 FVAMLGTRRL--PFPAFSFDIVHCS--RCL--------IPFTAY-----NATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        32 ~~~v~dae~L--Pfpd~SFD~V~cs--~~l--------~hw~~~-----~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .+..+|+...  .+++++||+|++.  +..        -.|...     -...+.|+.|+|||||.+++...
T Consensus        10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~   81 (284)
T PRK11524         10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS   81 (284)
T ss_pred             EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            3455665443  4788999999984  111        011100     12688999999999999998643

>PHA03412 putative methyltransferase; Provisional

Probab=88.28  E-value=1.6  Score=42.33  Aligned_cols=67  Identities=10%  Similarity=0.120  Sum_probs=44.6

Q ss_pred             CChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccc--cC---------ChHHHHHHHhhcccCCcEEEE
Q 017068           15 DSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF--TA---------YNATYLIEVDRLLRPGGYLVI   83 (378)
Q Consensus        15 D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw--~~---------~~~~~L~Ev~RVLkPGG~lvi   83 (378)
                      |+++.+++.|++....+.+..+|....++ +++||+|+|+==+...  .+         ....++..+.|+|+||+. ++
T Consensus        83 EID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL  160 (241)
T PHA03412         83 ELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II  160 (241)
T ss_pred             ECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence            44568999999876567788888876665 5799999987322211  11         012577888897777775 44

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.79  E-value=0.39  Score=44.28  Aligned_cols=44  Identities=27%  Similarity=0.572  Sum_probs=36.1

Q ss_pred             CCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           42 PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        42 Pfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      --.-..||.|.|+.|+. +.+.....++-+.+.|||.|..++..|
T Consensus        98 q~eq~tFDiIlaADClF-fdE~h~sLvdtIk~lL~p~g~Al~fsP  141 (201)
T KOG3201|consen   98 QQEQHTFDIILAADCLF-FDEHHESLVDTIKSLLRPSGRALLFSP  141 (201)
T ss_pred             HHhhCcccEEEeccchh-HHHHHHHHHHHHHHHhCcccceeEecC
Confidence            34567999999999984 455445888999999999999888887

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=87.45  E-value=0.41  Score=45.81  Aligned_cols=119  Identities=14%  Similarity=0.188  Sum_probs=71.0

Q ss_pred             eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC--cchHHHHhhcc--ccccc-cccccCCCCC--CccccccccCcc
Q 017068          226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS--STLSVIYDRGL--IGVYH-DWCEPFSTYP--RTYDLIHVSGIE  296 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~--~~l~~i~eRGl--ig~~~-~w~~~f~typ--rtyDliH~~~~~  296 (378)
                      ..+|++|||.|.|-+.++.+  ..-.+-|-.....  .-+.-|-+.||  +-++. |=.+-+..++  .|.|-|+-.  |
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~--F  127 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN--F  127 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE--C
Confidence            58999999999999999743  3433344444332  45577888888  44442 2222222233  388877752  4


Q ss_pred             c-cccCCCCCCCCCCccceeeeecccccCCCeEEEe-CCHHHHHH-HHHHHhc
Q 017068          297 S-LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDK-VSRIANT  346 (378)
Q Consensus       297 ~-~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-d~~~~~~~-~~~~~~~  346 (378)
                      . .|.---..+.|=-=...|-++-|+|+|||.+.+. |..++.+. +.+....
T Consensus       128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~  180 (227)
T COG0220         128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH  180 (227)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence            3 4431111122222247888999999999999886 55555555 5554433

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=87.37  E-value=0.4  Score=44.38  Aligned_cols=135  Identities=17%  Similarity=0.288  Sum_probs=78.5

Q ss_pred             ccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeee---eccCCCeeEEEeccCCCC----cch-HHHHhhcc-
Q 017068          199 EADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAA---ALTSDPVWVMNVVPARKS----STL-SVIYDRGL-  269 (378)
Q Consensus       199 ~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa---~L~~~~vwvmnv~p~~~~----~~l-~~i~eRGl-  269 (378)
                      ....+.|.+.+-+=+. +.+.+..... +++|+|+|-| |=+   |+.....   +|+-.|+.    +=| .++-+=|| 
T Consensus        25 ~~~~~~~~~Hi~DSL~-~~~~~~~~~~-~~lDiGSGaG-fPGipLaI~~p~~---~~~LvEs~~KK~~FL~~~~~~L~L~   98 (184)
T PF02527_consen   25 RDPEEIWERHILDSLA-LLPFLPDFGK-KVLDIGSGAG-FPGIPLAIARPDL---QVTLVESVGKKVAFLKEVVRELGLS   98 (184)
T ss_dssp             -SHHHHHHHHHHHHHG-GGGCS-CCCS-EEEEETSTTT-TTHHHHHHH-TTS---EEEEEESSHHHHHHHHHHHHHHT-S
T ss_pred             CCHHHHHHHHHHHHHH-hhhhhccCCc-eEEecCCCCC-ChhHHHHHhCCCC---cEEEEeCCchHHHHHHHHHHHhCCC
Confidence            3345777766644333 2233444333 5999999966 422   2223333   22333332    222 55666677 


Q ss_pred             -ccccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC---HHHHHHHHHHHh
Q 017068          270 -IGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS---PEVIDKVSRIAN  345 (378)
Q Consensus       270 -ig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~---~~~~~~~~~~~~  345 (378)
                       +-++|...|. +.++..||++-| +-++            .+..++--+-+.|+|||.++.--.   .+.+++.++-.+
T Consensus        99 nv~v~~~R~E~-~~~~~~fd~v~a-RAv~------------~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~  164 (184)
T PF02527_consen   99 NVEVINGRAEE-PEYRESFDVVTA-RAVA------------PLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWK  164 (184)
T ss_dssp             SEEEEES-HHH-TTTTT-EEEEEE-ESSS------------SHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHH
T ss_pred             CEEEEEeeecc-cccCCCccEEEe-ehhc------------CHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHH
Confidence             4578888887 667899999876 3443            334566667789999999988743   445666666677


Q ss_pred             cCCceEEE
Q 017068          346 TVRWTAAV  353 (378)
Q Consensus       346 ~l~W~~~~  353 (378)
                      .+.++...
T Consensus       165 ~~~~~~~~  172 (184)
T PF02527_consen  165 KLGLKVLS  172 (184)
T ss_dssp             CCCEEEEE
T ss_pred             HhCCEEee
Confidence            77777654

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=87.18  E-value=0.78  Score=48.44  Aligned_cols=77  Identities=18%  Similarity=0.262  Sum_probs=46.5

Q ss_pred             CChHHHHHHHHH----cCCC-eEEEEcccCCCC-CCCCceeEEE----ecCc---------cccccCC--------hHHH
Q 017068           15 DSHKAQIQFALE----RGIP-AFVAMLGTRRLP-FPAFSFDIVH----CSRC---------LIPFTAY--------NATY   67 (378)
Q Consensus        15 D~se~~vq~A~e----rg~~-~~~~v~dae~LP-fpd~SFD~V~----cs~~---------l~hw~~~--------~~~~   67 (378)
                      |+++..++..++    -|+. +.+...|+..++ ...+.||.|+    ||-.         ...|...        ....
T Consensus       145 D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~i  224 (470)
T PRK11933        145 EYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQREL  224 (470)
T ss_pred             eCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHH
Confidence            333444444433    3665 345556776653 3346799998    6622         1223211        1368


Q ss_pred             HHHHhhcccCCcEEEEEcCCCCCC
Q 017068           68 LIEVDRLLRPGGYLVISGPPVQWP   91 (378)
Q Consensus        68 L~Ev~RVLkPGG~lvis~pp~~~~   91 (378)
                      |..+.+.|||||+++.|+=.++..
T Consensus       225 L~~A~~~LkpGG~LVYSTCT~~~e  248 (470)
T PRK11933        225 IESAFHALKPGGTLVYSTCTLNRE  248 (470)
T ss_pred             HHHHHHHcCCCcEEEEECCCCCHH
Confidence            889999999999999987644433

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=86.28  E-value=0.67  Score=51.13  Aligned_cols=76  Identities=20%  Similarity=0.298  Sum_probs=46.7

Q ss_pred             eEEEecCCCCChHHHHHHHHHc----CCC---eEEEEcccCC-CCCCCCceeEEEecCc-cc------c---ccCChHHH
Q 017068            6 ILTLSFAPRDSHKAQIQFALER----GIP---AFVAMLGTRR-LPFPAFSFDIVHCSRC-LI------P---FTAYNATY   67 (378)
Q Consensus         6 v~~ms~ap~D~se~~vq~A~er----g~~---~~~~v~dae~-LPfpd~SFD~V~cs~~-l~------h---w~~~~~~~   67 (378)
                      |++++++     +.+++.|+++    |+.   +.+..+|+.+ +.-..++||+|++.-= +.      .   ....-...
T Consensus       564 V~~vD~s-----~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l  638 (702)
T PRK11783        564 TTTVDMS-----NTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVAL  638 (702)
T ss_pred             EEEEeCC-----HHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHH
Confidence            5555555     6777777764    443   5677777633 2111578999998410 00      0   00111257


Q ss_pred             HHHHhhcccCCcEEEEEcC
Q 017068           68 LIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        68 L~Ev~RVLkPGG~lvis~p   86 (378)
                      +..+.++|+|||.++++..
T Consensus       639 ~~~a~~lL~~gG~l~~~~~  657 (702)
T PRK11783        639 IKDAKRLLRPGGTLYFSNN  657 (702)
T ss_pred             HHHHHHHcCCCCEEEEEeC
Confidence            7888999999999998764

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=86.17  E-value=1.4  Score=43.54  Aligned_cols=128  Identities=13%  Similarity=0.152  Sum_probs=70.4

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hcc--ccc-cccccccCCCCCCccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGL--IGV-YHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGl--ig~-~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      ..|||+|||+|.|+..|..+.-   .|+..|.. ..+..+-+    .|+  +-. ..|-.+-.......||+|.++-   
T Consensus       175 ~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dP---  248 (315)
T PRK03522        175 RSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNP---  248 (315)
T ss_pred             CEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECC---
Confidence            6799999999999999988654   66777765 66654432    343  111 1111111111224689888751   


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHHH-HHHHHHHhcCCceEEE---ecCCCCCCCCeEEEEEEe
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVI-DKVSRIANTVRWTAAV---HDKEPGSNGREKILVATK  371 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~-~~~~~~~~~l~W~~~~---~~~~~~~~~~e~~l~~~K  371 (378)
                               .|..+..-++++=.-++|++.++++-...++ ..++.+ .  -|++..   .|-=+.+..=|-+..-++
T Consensus       249 ---------Pr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-~--~y~~~~~~~~DmFP~T~HvE~v~~l~r  314 (315)
T PRK03522        249 ---------PRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-P--GYRIERVQLFDMFPHTAHYEVLTLLVR  314 (315)
T ss_pred             ---------CCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-c--CcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence                     1223333333332336899999999665543 344444 2  466543   344333333466655544

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=86.05  E-value=2.6  Score=41.06  Aligned_cols=77  Identities=17%  Similarity=0.251  Sum_probs=48.6

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCCC--CCCCceeEEEecCcccccc---------------
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFT---------------   61 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~LP--fpd~SFD~V~cs~~l~hw~---------------   61 (378)
                      .|.++.+.     +.++++|.+.    ++  .+.+..+|.....  ++-.+||+|+|+==...-.               
T Consensus        70 ~I~~VEiq-----~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e  144 (248)
T COG4123          70 KIVGVEIQ-----EEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHE  144 (248)
T ss_pred             cEEEEEeC-----HHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhh
Confidence            35555555     6788888775    12  2456667765553  4455899999973211110               


Q ss_pred             --CChHHHHHHHhhcccCCcEEEEEcC
Q 017068           62 --AYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        62 --~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                        -.-...++-..++|||||++.+..+
T Consensus       145 ~~~~le~~i~~a~~~lk~~G~l~~V~r  171 (248)
T COG4123         145 ITLDLEDLIRAAAKLLKPGGRLAFVHR  171 (248)
T ss_pred             hcCCHHHHHHHHHHHccCCCEEEEEec
Confidence              0112667778899999999998776

>PLN02823 spermine synthase

Probab=85.98  E-value=4.5  Score=40.91  Aligned_cols=75  Identities=16%  Similarity=0.227  Sum_probs=47.9

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC---------CCeEEEEcccCC-CCCCCCceeEEEecCccccccC--C----hHHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTA--Y----NATYL   68 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg---------~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~--~----~~~~L   68 (378)
                      .|+++.+.     +.+++.|++.-         ..+.+.++|+.+ |.-.+++||+|++-. .-++..  .    ...++
T Consensus       129 ~v~~VEiD-----~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~-~dp~~~~~~~~Lyt~eF~  202 (336)
T PLN02823        129 KVVMCDID-----QEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDL-ADPVEGGPCYQLYTKSFY  202 (336)
T ss_pred             eEEEEECC-----HHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecC-CCccccCcchhhccHHHH
Confidence            34555555     58999998752         234566666533 344568899999752 222211  0    12567


Q ss_pred             H-HHhhcccCCcEEEEEc
Q 017068           69 I-EVDRLLRPGGYLVISG   85 (378)
Q Consensus        69 ~-Ev~RVLkPGG~lvis~   85 (378)
                      + .+.+.|+|||.+++..
T Consensus       203 ~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        203 ERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             HHHHHHhcCCCcEEEEec
Confidence            6 8999999999998754

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=85.35  E-value=1  Score=45.62  Aligned_cols=38  Identities=21%  Similarity=0.358  Sum_probs=34.6

Q ss_pred             eEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           49 DIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        49 D~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |+|++-++++||.|.+ .+.|+.+..-|+|||.+++...
T Consensus       238 daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  238 DAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             CeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            4999999999999977 7999999999999999998654

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=85.07  E-value=1.1  Score=42.16  Aligned_cols=69  Identities=17%  Similarity=0.105  Sum_probs=44.8

Q ss_pred             eEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068            6 ILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY   80 (378)
Q Consensus         6 v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~   80 (378)
                      |+++.+.     +..++.|+++    +. ++.+..+|...---+...||.|++..+..   ..+    .++.+-||+||+
T Consensus       100 Vv~vE~~-----~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~---~ip----~~l~~qL~~gGr  167 (209)
T PF01135_consen  100 VVSVERD-----PELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTAAVP---EIP----EALLEQLKPGGR  167 (209)
T ss_dssp             EEEEESB-----HHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESSBBS---S------HHHHHTEEEEEE
T ss_pred             EEEECcc-----HHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEeeccc---hHH----HHHHHhcCCCcE
Confidence            5566555     5777777765    44 46778888644322456899999987653   222    567778999999


Q ss_pred             EEEEcC
Q 017068           81 LVISGP   86 (378)
Q Consensus        81 lvis~p   86 (378)
                      +++-..
T Consensus       168 LV~pi~  173 (209)
T PF01135_consen  168 LVAPIG  173 (209)
T ss_dssp             EEEEES
T ss_pred             EEEEEc
Confidence            998543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=84.93  E-value=2.4  Score=43.12  Aligned_cols=109  Identities=10%  Similarity=0.147  Sum_probs=59.3

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc--ccc-cccccccCCCCCCccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL--IGV-YHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig~-~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      ++|||++||+|.|+..|..+.-   .|+-+|.. ..+..+-+.    |+  +-. -.|..+..+..-..||+|-.+--  
T Consensus       235 ~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP--  309 (374)
T TIGR02085       235 TQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP--  309 (374)
T ss_pred             CEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC--
Confidence            5899999999999999987654   45666644 455433332    22  101 11111111111134788777421  


Q ss_pred             cccCCCCCCCCCCc-cceeeeecccccCCCeEEEeCCHHHHH-HHHHHHhcCCceEEE
Q 017068          298 LIKNPGSNKNSCSL-VDLMVEMDRMLRPEGTVVVRDSPEVID-KVSRIANTVRWTAAV  353 (378)
Q Consensus       298 ~~~~~~~~~~~c~~-~~~l~EmDRiLRPgG~~ii~d~~~~~~-~~~~~~~~l~W~~~~  353 (378)
                                |..+ ..++-.+. -++|++.++++-...++. .+..+ .  -|++..
T Consensus       310 ----------r~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L-~--gy~l~~  353 (374)
T TIGR02085       310 ----------RRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL-S--GYQIER  353 (374)
T ss_pred             ----------CCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh-c--CceEEE
Confidence                      2222 22222222 279999999997766544 45555 2  477653

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=84.83  E-value=2.6  Score=40.47  Aligned_cols=73  Identities=19%  Similarity=0.098  Sum_probs=43.2

Q ss_pred             CCChHHHHHHHHHcC--CCeEEEEcccCC-CCC-CCCceeEEEecCccc--------------ccc-------CC----h
Q 017068           14 RDSHKAQIQFALERG--IPAFVAMLGTRR-LPF-PAFSFDIVHCSRCLI--------------PFT-------AY----N   64 (378)
Q Consensus        14 ~D~se~~vq~A~erg--~~~~~~v~dae~-LPf-pd~SFD~V~cs~~l~--------------hw~-------~~----~   64 (378)
                      .|.|+.+++.|+++-  ....+..+|..+ ++- ..+.||+|+++-=.+              |.+       .+    -
T Consensus       116 vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~  195 (251)
T TIGR03704       116 ADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVL  195 (251)
T ss_pred             EECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHH
Confidence            345567888877651  113566666543 221 135799999863111              110       00    0


Q ss_pred             HHHHHHHhhcccCCcEEEEEcC
Q 017068           65 ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        65 ~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      ...+..+.++|||||.+++...
T Consensus       196 ~~i~~~a~~~L~~gG~l~l~~~  217 (251)
T TIGR03704       196 RRVAAGAPDWLAPGGHLLVETS  217 (251)
T ss_pred             HHHHHHHHHhcCCCCEEEEEEC
Confidence            2566777899999999998754

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.62  E-value=1.8  Score=41.80  Aligned_cols=75  Identities=16%  Similarity=0.199  Sum_probs=48.7

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCCC--eEEEEccc-CCC-----CCCCCceeEEEecCccccccCChHHHHHHHhhccc
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGIP--AFVAMLGT-RRL-----PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLR   76 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~~--~~~~v~da-e~L-----Pfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLk   76 (378)
                      .|+|+++-+...--. .++-+..|+.  +.+.++.+ +.|     -.+.++||+|+.    =||.+.-.....+..|.||
T Consensus       100 rv~a~eid~~~~~~~-~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFv----DadK~nY~~y~e~~l~Llr  174 (237)
T KOG1663|consen  100 RVVAIEIDADAYEIG-LELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFV----DADKDNYSNYYERLLRLLR  174 (237)
T ss_pred             eEEEEecChHHHHHh-HHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEE----ccchHHHHHHHHHHHhhcc
Confidence            467777765332222 3444444543  45555543 222     257899999984    4666654578899999999


Q ss_pred             CCcEEEEE
Q 017068           77 PGGYLVIS   84 (378)
Q Consensus        77 PGG~lvis   84 (378)
                      +||.+++-
T Consensus       175 ~GGvi~~D  182 (237)
T KOG1663|consen  175 VGGVIVVD  182 (237)
T ss_pred             cccEEEEe
Confidence            99999974

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=84.18  E-value=4.5  Score=40.48  Aligned_cols=77  Identities=25%  Similarity=0.293  Sum_probs=52.8

Q ss_pred             cCCCCChHHHHHH----HHHcCCC--eEEEEcccCC---CCCCCCceeEEEecCccccccCCh--HHHHHHHhhcccCCc
Q 017068           11 FAPRDSHKAQIQF----ALERGIP--AFVAMLGTRR---LPFPAFSFDIVHCSRCLIPFTAYN--ATYLIEVDRLLRPGG   79 (378)
Q Consensus        11 ~ap~D~se~~vq~----A~erg~~--~~~~v~dae~---LPfpd~SFD~V~cs~~l~hw~~~~--~~~L~Ev~RVLkPGG   79 (378)
                      +--+|.|+..|+.    ++++|+.  +.|..+|+-.   +.=-+-..++++.+-.+.-++|..  ...+.-+.+.|.|||
T Consensus       164 i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG  243 (311)
T PF12147_consen  164 ILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGG  243 (311)
T ss_pred             EEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCc
Confidence            3345666666655    4456776  3677777532   221244458888887777777755  467899999999999


Q ss_pred             EEEEEcCC
Q 017068           80 YLVISGPP   87 (378)
Q Consensus        80 ~lvis~pp   87 (378)
                      +++.++.|
T Consensus       244 ~lIyTgQP  251 (311)
T PF12147_consen  244 YLIYTGQP  251 (311)
T ss_pred             EEEEcCCC
Confidence            99999864

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=83.97  E-value=0.36  Score=45.12  Aligned_cols=120  Identities=10%  Similarity=0.034  Sum_probs=60.0

Q ss_pred             cccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeee-ccCCCeeEEEeccCCCC-cchHHHHh----hcc--
Q 017068          198 FEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAA-LTSDPVWVMNVVPARKS-STLSVIYD----RGL--  269 (378)
Q Consensus       198 F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~-L~~~~vwvmnv~p~~~~-~~l~~i~e----RGl--  269 (378)
                      +...+..-++.+-++....    ..+  ..|||++||+|.||.. |.....   .|+-.+.. ..+..+.+    -|+  
T Consensus        33 ~Rp~~d~v~e~l~~~l~~~----~~~--~~vLDl~~GsG~l~l~~lsr~a~---~V~~vE~~~~a~~~a~~Nl~~~~~~~  103 (199)
T PRK10909         33 LRPTTDRVRETLFNWLAPV----IVD--ARCLDCFAGSGALGLEALSRYAA---GATLLEMDRAVAQQLIKNLATLKAGN  103 (199)
T ss_pred             cCcCCHHHHHHHHHHHhhh----cCC--CEEEEcCCCccHHHHHHHHcCCC---EEEEEECCHHHHHHHHHHHHHhCCCc
Confidence            4556666666665544311    122  3699999999999975 444334   33444433 22222211    122  


Q ss_pred             cc-ccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH
Q 017068          270 IG-VYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP  334 (378)
Q Consensus       270 ig-~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~  334 (378)
                      +- +..|..+.++.....||+|-++--|-.       +-...+-..|.+ -.+|.|+|.+++.-..
T Consensus       104 v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~-------g~~~~~l~~l~~-~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        104 ARVVNTNALSFLAQPGTPHNVVFVDPPFRK-------GLLEETINLLED-NGWLADEALIYVESEV  161 (199)
T ss_pred             EEEEEchHHHHHhhcCCCceEEEECCCCCC-------ChHHHHHHHHHH-CCCcCCCcEEEEEecC
Confidence            11 122333323222346999988644310       000111122222 3568999999998543

>PLN02672 methionine S-methyltransferase

Probab=83.39  E-value=1  Score=52.10  Aligned_cols=124  Identities=15%  Similarity=0.087  Sum_probs=69.4

Q ss_pred             eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHh---h----------------cc---cc-ccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD---R----------------GL---IG-VYHDWCEPF  280 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~e---R----------------Gl---ig-~~~~w~~~f  280 (378)
                      ..|+|+|||+|-.+-+|..+ +-.  .|+..|-+ ..+.++.+   +                ++   +- +..||.+.+
T Consensus       120 ~~VLDlG~GSG~Iai~La~~~~~~--~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~  197 (1082)
T PLN02672        120 KTVAELGCGNGWISIAIAEKWLPS--KVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC  197 (1082)
T ss_pred             CEEEEEecchHHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence            36999999999999988653 311  45666654 55554421   1                11   11 344676655


Q ss_pred             CCCCCccccccccCccccccC-----CCCC-----------CCCCCc-------------cceeeeecccccCCCeEEEe
Q 017068          281 STYPRTYDLIHVSGIESLIKN-----PGSN-----------KNSCSL-------------VDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       281 ~typrtyDliH~~~~~~~~~~-----~~~~-----------~~~c~~-------------~~~l~EmDRiLRPgG~~ii~  331 (378)
                      ......||+|.+.--.....+     +...           +..|-+             ..++-|.-++|+|||++++-
T Consensus       198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE  277 (1082)
T PLN02672        198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN  277 (1082)
T ss_pred             cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            321125999988643221110     0000           012322             35777888999999999987


Q ss_pred             CCHHHHHHHH-HHHhcCCceE
Q 017068          332 DSPEVIDKVS-RIANTVRWTA  351 (378)
Q Consensus       332 d~~~~~~~~~-~~~~~l~W~~  351 (378)
                      =..+.-+.+. ++.++.-|+.
T Consensus       278 iG~~q~~~v~~~l~~~~gf~~  298 (1082)
T PLN02672        278 MGGRPGQAVCERLFERRGFRI  298 (1082)
T ss_pred             ECccHHHHHHHHHHHHCCCCe
Confidence            4444444555 4555444443

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=83.17  E-value=0.59  Score=45.34  Aligned_cols=39  Identities=10%  Similarity=0.284  Sum_probs=30.4

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR  267 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR  267 (378)
                      .+|||+|||+|.++.+|.++.-   .|+..|.. .+++.+-++
T Consensus        44 ~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~   83 (272)
T PRK00274         44 DNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAET   83 (272)
T ss_pred             CeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHh
Confidence            5799999999999999988754   56667755 677766554

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=81.92  E-value=3.2  Score=42.86  Aligned_cols=75  Identities=16%  Similarity=0.231  Sum_probs=45.5

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC---CeEEEEcccCCCC--C--CCCceeEEEecCccccccCCh---------
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI---PAFVAMLGTRRLP--F--PAFSFDIVHCSRCLIPFTAYN---------   64 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~---~~~~~v~dae~LP--f--pd~SFD~V~cs~~l~hw~~~~---------   64 (378)
                      .|++++++     +.+++.|+++    |+   .+.+..+|+...-  +  ..++||+|++.-=  .+....         
T Consensus       245 ~V~~VD~s-----~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP--~f~~~k~~l~~~~~~  317 (396)
T PRK15128        245 QVVSVDTS-----QEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPP--KFVENKSQLMGACRG  317 (396)
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCC--CCCCChHHHHHHHHH
Confidence            35666555     5777777664    44   3567777764421  2  3568999998621  111111         


Q ss_pred             -HHHHHHHhhcccCCcEEEEEcC
Q 017068           65 -ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        65 -~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                       ...+....++|+|||.++.++-
T Consensus       318 y~~l~~~a~~lLk~gG~lv~~sc  340 (396)
T PRK15128        318 YKDINMLAIQLLNPGGILLTFSC  340 (396)
T ss_pred             HHHHHHHHHHHcCCCeEEEEEeC
Confidence             1334457899999999997543

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=81.82  E-value=0.26  Score=45.98  Aligned_cols=129  Identities=16%  Similarity=0.179  Sum_probs=65.9

Q ss_pred             ccccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcce----eeeeeccC----CCeeEEEeccCCCC-cchHHHHhh
Q 017068          197 VFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFG----GFAAALTS----DPVWVMNVVPARKS-STLSVIYDR  267 (378)
Q Consensus       197 ~F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g----~faa~L~~----~~vwvmnv~p~~~~-~~l~~i~eR  267 (378)
                      .|-.|..+|..-.+.....+......++-=.|...||++|    |.|..|.+    ..-|-+.|..+|-+ ..|+. +.+
T Consensus         4 ~FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~-Ar~   82 (196)
T PF01739_consen    4 YFFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEK-ARA   82 (196)
T ss_dssp             -TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHH-HHH
T ss_pred             cccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHH-HHh
Confidence            4666777777666555521211122234455788888888    55555544    22345677777765 44432 233


Q ss_pred             cc----------cc--------------------------ccccccccCCCCCCccccccccCccccccCCCCCCCCCCc
Q 017068          268 GL----------IG--------------------------VYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSL  311 (378)
Q Consensus       268 Gl----------ig--------------------------~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~  311 (378)
                      |.          .+                          ..||-.+ .++.+.-||+|-|-.++.++.       .-.-
T Consensus        83 G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~-------~~~~  154 (196)
T PF01739_consen   83 GIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFD-------PETQ  154 (196)
T ss_dssp             TEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS--------HHHH
T ss_pred             CCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeC-------HHHH
Confidence            33          00                          1233333 234457999999999999885       1122


Q ss_pred             cceeeeecccccCCCeEEEeCCH
Q 017068          312 VDLMVEMDRMLRPEGTVVVRDSP  334 (378)
Q Consensus       312 ~~~l~EmDRiLRPgG~~ii~d~~  334 (378)
                      ..++--+-+.|+||||+++-...
T Consensus       155 ~~vl~~l~~~L~pgG~L~lG~sE  177 (196)
T PF01739_consen  155 QRVLRRLHRSLKPGGYLFLGHSE  177 (196)
T ss_dssp             HHHHHHHGGGEEEEEEEEE-TT-
T ss_pred             HHHHHHHHHHcCCCCEEEEecCc
Confidence            46777889999999999997654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK00536 speE spermidine synthase; Provisional

Probab=80.99  E-value=4.5  Score=39.60  Aligned_cols=63  Identities=10%  Similarity=0.075  Sum_probs=40.6

Q ss_pred             CChHHHHHHHHHcC---------CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEc
Q 017068           15 DSHKAQIQFALERG---------IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        15 D~se~~vq~A~erg---------~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      |+.+..|+.|++--         ..+.+.. ...  .-..++||+|++-..     .+. ...+.+.|.|+|||.++.-.
T Consensus       101 eID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDVIIvDs~-----~~~-~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        101 QADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDLIICLQE-----PDI-HKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             ECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCEEEEcCC-----CCh-HHHHHHHHhcCCCcEEEECC
Confidence            45578999998831         1222222 111  112478999997532     233 77899999999999999854


Q ss_pred             C
Q 017068           86 P   86 (378)
Q Consensus        86 p   86 (378)
                      .
T Consensus       172 ~  172 (262)
T PRK00536        172 K  172 (262)
T ss_pred             C
Confidence            3

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=80.78  E-value=0.38  Score=46.71  Aligned_cols=97  Identities=19%  Similarity=0.234  Sum_probs=66.0

Q ss_pred             CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHH---HhhccccccccccccCCCCC-CccccccccCcccc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVI---YDRGLIGVYHDWCEPFSTYP-RTYDLIHVSGIESL  298 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i---~eRGlig~~~~w~~~f~typ-rtyDliH~~~~~~~  298 (378)
                      ..-+++|+||+.|-.+-.|+..+|  =-+.-.|.+ .+++-.   -|-+++-.|-.--|.|..|- +++|||-.+-.+ +
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-H  148 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-H  148 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-h
Confidence            578999999999999999998875  122334444 454433   34566666666666655555 899999876433 3


Q ss_pred             ccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      |.        -.+..-|+-..-+|+|.|.||-+
T Consensus       149 W~--------NdLPg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  149 WT--------NDLPGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             hh--------ccCchHHHHHHHhcCCCccchhH
Confidence            44        12344567778899999999876

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=80.75  E-value=0.92  Score=42.76  Aligned_cols=100  Identities=20%  Similarity=0.207  Sum_probs=49.0

Q ss_pred             HHHHhhhhcCCCCeeEEEecCCcceeeeeecc---CCCeeEEEeccCCCC-cchHHHHhh-cc--cc-ccccccccCCCC
Q 017068          212 YKNTLNVKLGTPAIRNIMDMNAFFGGFAAALT---SDPVWVMNVVPARKS-STLSVIYDR-GL--IG-VYHDWCEPFSTY  283 (378)
Q Consensus       212 Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~---~~~vwvmnv~p~~~~-~~l~~i~eR-Gl--ig-~~~~w~~~f~ty  283 (378)
                      ..+.|.  ++.|.  .|||+|||+|=++|.|.   .+.--|.+|-....- ..-+-.+++ |+  +. +..|=.+.++..
T Consensus        64 ~l~~L~--l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~  139 (209)
T PF01135_consen   64 MLEALD--LKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE  139 (209)
T ss_dssp             HHHHTT--C-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred             HHHHHh--cCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence            344444  66664  79999999998888775   222223444332211 111222222 33  11 233433322221


Q ss_pred             CCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          284 PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       284 prtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                       -.||.||++.....               +--++=.-|+|||.+|+-
T Consensus       140 -apfD~I~v~~a~~~---------------ip~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  140 -APFDRIIVTAAVPE---------------IPEALLEQLKPGGRLVAP  171 (209)
T ss_dssp             --SEEEEEESSBBSS-----------------HHHHHTEEEEEEEEEE
T ss_pred             -CCcCEEEEeeccch---------------HHHHHHHhcCCCcEEEEE
Confidence             36999999644432               222233458999999873

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.62  E-value=0.23  Score=45.37  Aligned_cols=48  Identities=19%  Similarity=0.211  Sum_probs=36.4

Q ss_pred             cccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          275 DWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       275 ~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      +|-.+|-  |+|.|+|-|.+++-++.      - -+.-..+-|-.|+|||||++=+.
T Consensus        38 s~e~~F~--dns~d~iyaeHvlEHlt------~-~Eg~~alkechr~Lrp~G~LriA   85 (185)
T COG4627          38 SNESMFE--DNSVDAIYAEHVLEHLT------Y-DEGTSALKECHRFLRPGGKLRIA   85 (185)
T ss_pred             hhhccCC--CcchHHHHHHHHHHHHh------H-HHHHHHHHHHHHHhCcCcEEEEE
Confidence            3445554  59999999999987765      1 12246788999999999999886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	378
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	5e-06
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	9e-06
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	2e-05
3f4k_A	257	Putative methyltransferase; structural genomics, P	3e-05
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	3e-05
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	3e-05
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	4e-05
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	4e-05
1xxl_A	239	YCGJ protein; structural genomics, protein structu	8e-05
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	8e-05
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	1e-04
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	1e-04
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	1e-04
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	2e-04
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	2e-04
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	2e-04
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	4e-04
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	4e-04
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	5e-04
3i9f_A	170	Putative type 11 methyltransferase; structural gen	5e-04
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	6e-04
3cc8_A	230	Putative methyltransferase; structural genomics, j	6e-04
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	6e-04
3ocj_A	305	Putative exported protein; structural genomics, PS	7e-04
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	7e-04
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	7e-04
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	8e-04

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 40  RLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWAD 99
            LPF    F+ +     L          L E+ R+L+  GY  I+        ++  +  
Sbjct: 109 SLPFENEQFEAIMAINSLEWTEEPLRA-LNEIKRVLKSDGYACIAILGPTAKPRENSYPR 167

Query: 100 L 100
           L
Sbjct: 168 L 168

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 45.2 bits (107), Expect = 9e-06
 Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 39  RRLPFPAFSFDIVHCSRCLIPFTA--YNATYLIEVDRLLRPGGYLVIS-GPPVQWPKQDK 95
                    FD++  +  ++ F A       L  + R L   G  VI  G    W     
Sbjct: 99  SVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWV---- 154

Query: 96  EWADLQAVARALCYEL 111
            + D   VA  +  EL
Sbjct: 155 -FGDFLEVAERVGLEL 169

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 23/127 (18%)

Query: 7   LTLSFAPR-------DSHKAQIQFALERGIPA-FVAMLGTRRLPFP-AFSFDIVHCSRCL 57
               F P+       D     ++ A      A      G   LP      F ++      
Sbjct: 62  DAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR--- 118

Query: 58  IPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGN 117
                 +   ++ +  L  P  + +  GP +  P       ++     A+ ++++A D  
Sbjct: 119 --RGPTSV--ILRLPELAAPDAHFLYVGPRLNVP-------EVPERLAAVGWDIVAEDHV 167

Query: 118 TVIWKKP 124
           +V+   P
Sbjct: 168 SVLAHAP 174

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 23/148 (15%), Positives = 41/148 (27%), Gaps = 33/148 (22%)

Query: 15  DSHKAQIQFALERGIPAFVAMLGTR---------RLPFPAFSFDIVHCSRCL--IPFTAY 63
           D     I+   E    A  A    R          LPF     D++     +  I F   
Sbjct: 76  DLFPDFIEIFNEN---AVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGF--- 129

Query: 64  NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKK 123
               + E  + L+ GG++ +S     W    +  A+++        E+  +       ++
Sbjct: 130 -ERGMNEWSKYLKKGGFIAVSE--ASWFT-SERPAEIEDFWMDAYPEISVIPTCIDKMER 185

Query: 124 PVGESCLSNQNEFGLELCDESDDPNYAW 151
                        G         P   W
Sbjct: 186 A------------GYTPTAHFILPENCW 201

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 6/98 (6%)

Query: 15  DSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRL 74
           +  +   + A +RG+           LP    SFD        I F       L E  R+
Sbjct: 72  EPSERMAEIARKRGVFVLKGTA--ENLPLKDESFDFA-LMVTTICFVDDPERALKEAYRI 128

Query: 75  LRPGGYLVISGPPVQWPKQD---KEWADLQAVARALCY 109
           L+ GGYL++     +        K          A  +
Sbjct: 129 LKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFF 166

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 40  RLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS----GPPVQWPKQDK 95
            LPF   SFD +     L    +     L  + ++L+PGG + +     G     P+  K
Sbjct: 98  SLPFEDSSFDHIFVCFVLEHLQSPEE-ALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKK 156

Query: 96  EWADLQAVARA 106
                  + R 
Sbjct: 157 AIEAWNCLIRV 167

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 41  LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 84
           LPF     D++  S   I    +    L E  + L+ GGYL +S
Sbjct: 108 LPFRNEELDLIW-SEGAIYNIGFERG-LNEWRKYLKKGGYLAVS 149

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 39  RRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEW 97
           R+LPF   S   V+    +      +    + E+ R+L+PGG   I+        +D+ +
Sbjct: 81  RKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINF----LTTKDERY 136

Query: 98  ADLQAVARALCYELIAVDGNTVIWKKP 124
              + +      +L   +     +   
Sbjct: 137 NKGEKIGEGEFLQLERGEKVIHSYVSL 163

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 40  RLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 84
            LPFP  SFDI+ C      F+      + EV R+L+  G  ++ 
Sbjct: 80  SLPFPDDSFDIITCRYAAHHFSDVRKA-VREVARVLKQDGRFLLV 123

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 40  RLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWAD 99
            +P      D++  SR  + F    AT   E+ R+L+ GG   I G       +D   A+
Sbjct: 104 NIPIEDNYADLI-VSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAE 162

Query: 100 L 100
           +
Sbjct: 163 M 163

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 41  LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS--GPPVQWPKQDKEWA 98
              P  S DIV    C+   +        E+ R+LR GG L  S      +  +  ++  
Sbjct: 160 EGVPDSSVDIVIS-NCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDP 218

Query: 99  DLQA 102
            L  
Sbjct: 219 ILYG 222

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 12/98 (12%), Positives = 27/98 (27%), Gaps = 10/98 (10%)

Query: 15  DSHKAQIQFALER--GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEV 71
           +     ++ A +    +      +    L      +  +     LI          L+ +
Sbjct: 70  EPATRLVELARQTHPSVTFHHGTI--TDLSDSPKRWAGLLAWYSLIHMGPGELPDALVAL 127

Query: 72  DRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCY 109
              +  GG L++S     +            VA A  +
Sbjct: 128 RMAVEDGGGLLMS-----FFSGPSLEPMYHPVATAYRW 160

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 39  RRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVIS 84
           R+L F   +FD V     ++ F          EV R+L+P G  ++ 
Sbjct: 95  RKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY 141

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 39  RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWA 98
             LPF   SFD V  +   +         L E+ R+LRPGG + I+     +        
Sbjct: 121 MDLPFEDASFDAVW-ALESLHHMPDRGRALREMARVLRPGGTVAIA----DFVLLAPVEG 175

Query: 99  DLQAVARALC 108
             +    A  
Sbjct: 176 AKKEAVDAFR 185

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 40  RLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVI 83
           ++PF    F IV C      F    +  + E  R+L+ GG L++
Sbjct: 96  QMPFTDERFHIVTCRIAAHHFPNPASF-VSEAYRVLKKGGQLLL 138

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 5/88 (5%)

Query: 24  ALERGIPAFVAMLGT-RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLV 82
             + G+     +     ++P P  + D +  +       +    +L E+ R+ +P  YL 
Sbjct: 82  VNKLGLKNVEVLKSEENKIPLPDNTVDFIFMA-FTFHELSEPLKFLEELKRVAKPFAYLA 140

Query: 83  I---SGPPVQWPKQDKEWADLQAVARAL 107
           I              +E      V   L
Sbjct: 141 IIDWKKEERDKGPPPEEVYSEWEVGLIL 168

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 7   LTLSFAPR-------DSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 59
            +L    R       D  K  ++ A E+G+   V       LPFP+ +F+ V     ++ 
Sbjct: 68  WSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKA-EDLPFPSGAFEAVLALGDVLS 126

Query: 60  FTAYNATYLIEVDRLLRPGGYLVIS 84
           +         E+ R+L P G L+ +
Sbjct: 127 YVENKDKAFSEIRRVLVPDGLLIAT 151

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 51/359 (14%), Positives = 99/359 (27%), Gaps = 115/359 (32%)

Query: 59  PFTAYNATYLIEVDRL------LRPGGYLVI-----SGPPVQWPKQDKEWADLQA-VARA 106
            F  YN + L    +L      LRP   ++I     SG         K W  +   V  +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG---------KTW--VALDVCLS 173

Query: 107 LCYELIAVDGNTVIWKKPVG-----ESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSG 161
             Y++       + W   +      E+ L    +   ++     DPN+            
Sbjct: 174 --YKVQCKMDFKIFWLN-LKNCNSPETVLEMLQKLLYQI-----DPNW--------TSRS 217

Query: 162 TSSVKGEYAVGTIPKWPQRLTKAPS--RAL-VMKNGYDVFEADSRRWRRRVAYYKNTLNV 218
             S   +  + +I    +RL K+      L V+    +V          +     N  N+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL---NV-------QNAKAW---NAFNL 264

Query: 219 K---LGTPAIRNIMD-----------MNAFFGG---------FAAALTSDPVWVMNVVP- 254
               L T   + + D           ++                  L   P      +P 
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP----QDLPR 320

Query: 255 -ARKSSTLSVIYDRGLIG-VYHDWCEPFSTYPR-TYD----LIHVSGIESLIKNPGSNKN 307
               ++   +     +I     D    +  +     D    +I  S +  L   P   + 
Sbjct: 321 EVLTTNPRRL----SIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVL--EPAEYRK 373

Query: 308 SCSLVDLMVEMDRMLRPEGTVVV-------RDSPEVIDKVSRIANTVRW----TAAVHD 355
                 L V       P   + +        D   V++K+ + +   +     T ++  
Sbjct: 374 --MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 8e-04
 Identities = 43/350 (12%), Positives = 94/350 (26%), Gaps = 122/350 (34%)

Query: 92  KQDKEWADLQAVARALC----YELIAVDGNTV------IWKKPVGESCLSNQNEFGLE-L 140
             + +  D+Q + +++      + I +  + V       W        L ++ E  ++  
Sbjct: 30  VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW-------TLLSKQEEMVQKF 82

Query: 141 CDESDDPNYAW-YFKLKKCVSGTSSVKGEYAVGTIPKW--PQRLTKAPSRALVMKNGYDV 197
            +E    NY +    +K      S +   Y       +   Q   K           Y+V
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-----------YNV 131

Query: 198 FEADSRR---WRRRVAYY--KNTLNVKL-GTPAIRNIMDMNAFFGGFAAALTSDPVWVMN 251
               SR     + R A    +   NV + G       +       G              
Sbjct: 132 ----SRLQPYLKLRQALLELRPAKNVLIDG-------V------LGSG------------ 162

Query: 252 VVPARKSS-TLSVIYDRGLI-----GVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSN 305
                K+   L V     +       ++  W            ++ +  ++ L+     +
Sbjct: 163 -----KTWVALDVCLSYKVQCKMDFKIF--WLN-LKNCNSPETVLEM--LQKLLYQ--ID 210

Query: 306 KNSCSLVDLMV-----------EMDRMLR----PEGTVVVRD--SPEVID------KV-- 340
            N  S  D              E+ R+L+        +V+ +  + +  +      K+  
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 341 -SRIANTVRWTAAVHDKEPGSNGREKILVATKSL-----W------KLPS 378
            +R      + +A        +     L   +       +       LP 
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 39  RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDK 95
            ++P    S D+     CL         +L E +R+L+PGG L ++    ++     
Sbjct: 107 AQVPLEDESVDVAVF--CLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRT 161

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 39  RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVI 83
           R +P P  S   V           +    L E  R+L+PGG L+ 
Sbjct: 96  RAIPLPDESVHGVIVVHLWHLVPDWPKV-LAEAIRVLKPGGALLE 139

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 39  RRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVIS 84
               FP  +FD+++    ++  +  N      +  + L+P G L+I+
Sbjct: 112 LTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLIT 158

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 15/98 (15%)

Query: 7   LTLSFAPR-------DSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 59
                          D +   ++   E+     V  L       P  S D +  +     
Sbjct: 31  YCKYLLEFATKLYCIDINVIALKEVKEKF--DSVITLSDP-KEIPDNSVDFILFANSF-H 86

Query: 60  FTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEW 97
                   + EV R+L+  G ++I    + W K++   
Sbjct: 87  DMDDKQHVISEVKRILKDDGRVII----IDWRKENTGI 120

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 40  RLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 84
            LPFP  SFD+V     L          L+E  R+LRPGG LV+ 
Sbjct: 88  ALPFPGESFDVVLLFTTLEFVEDVERV-LLEARRVLRPGGALVVG 131

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 15  DSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCL--IPFTAYN-ATYLIEV 71
           ++     + A E+     +  + T  +P+    FD V     L  +     +    + +V
Sbjct: 61  EAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLF----DPWAVIEKV 116

Query: 72  DRLLRPGGYLVIS 84
              ++  G ++ S
Sbjct: 117 KPYIKQNGVILAS 129

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 41  LPFPAFSFDIVHCSRCL--IPFTAYNATYLIEVDRLLRPGGYLVIS 84
           L F   SFD       L  +P     +  + EV R+L+PG YL + 
Sbjct: 95  LSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLV 140

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 40.1 bits (93), Expect = 7e-04
 Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 4/75 (5%)

Query: 39  RRLPFPAFSFDIVHCSRCLI--PFTAYNATYLIEVDRLLRPGGYLVISG-PPVQWPKQDK 95
            +L      +D++  +   I  P  A          + L+PGG LV S   P      D 
Sbjct: 180 WKLDTRE-GYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDS 238

Query: 96  EWADLQAVARALCYE 110
            W         L  +
Sbjct: 239 PWDMQAIDPHDLQLQ 253

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 12/101 (11%)

Query: 15  DSHKAQIQFALER--GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVD 72
           D  K  I+ A +R   +   VA     RLPF   S D +                  E+ 
Sbjct: 116 DVSKVAIKAAAKRYPQVTFCVASS--HRLPFSDTSMDAIIRIYAPCKAE--------ELA 165

Query: 73  RLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 113
           R+++PGG+++ + P  +   + K     +    A   E + 
Sbjct: 166 RVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLE 206

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A Length = 176

 Score = 39.1 bits (90), Expect = 7e-04
 Identities = 18/67 (26%), Positives = 27/67 (40%)

Query: 41  LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADL 100
                 SFDI+         T ++A  L E+ R+LRPGG L +  P       + +    
Sbjct: 57  SAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTA 116

Query: 101 QAVARAL 107
             +  AL
Sbjct: 117 SKLCSAL 123

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 7/70 (10%)

Query: 19  AQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRL 74
             +  A       GI    A L   +L  P  SFD+   S   + +    A     V + 
Sbjct: 77  KMLARARAAGPDTGITYERADL--DKLHLPQDSFDLA-YSSLALHYVEDVARLFRTVHQA 133

Query: 75  LRPGGYLVIS 84
           L PGG+ V S
Sbjct: 134 LSPGGHFVFS 143

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	378
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.06
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.04
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.94
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.87
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.83
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.83
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.83
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.82
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.82
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.82
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.81
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.8
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.79
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.78
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.78
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.78
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.76
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.76
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.76
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.75
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.72
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.72
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.71
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.7
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.69
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.69
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.69
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.68
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.68
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.68
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.67
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.67
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.66
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.66
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.65
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.65
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.65
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.65
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.64
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.64
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.63
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.63
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.63
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.62
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.62
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.6
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.6
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.6
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.59
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.59
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.59
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.59
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.59
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.59
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.59
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.58
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.58
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.58
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.57
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.57
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.56
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.56
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.55
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.55
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.54
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.54
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.54
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.53
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.53
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.53
3ocj_A	305	Putative exported protein; structural genomics, PS	98.53
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.52
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.52
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.52
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.52
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.51
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.51
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.51
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.51
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.51
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.5
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.5
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.5
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.5
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.5
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.49
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.49
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.48
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.48
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.48
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.48
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.47
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.47
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.47
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.46
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.46
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.46
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.46
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.46
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.46
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.45
3ocj_A	305	Putative exported protein; structural genomics, PS	98.45
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.45
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.45
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.44
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.44
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.43
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.43
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.43
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.42
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.42
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.41
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.41
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.41
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.4
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.4
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.4
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.39
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.38
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.38
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.37
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.37
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.37
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.36
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.36
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.35
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.35
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.35
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.35
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.35
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.34
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.34
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.34
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.33
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.33
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.33
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.32
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.32
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.32
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.31
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.31
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.31
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.31
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.3
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.3
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.29
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.29
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.29
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.29
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.28
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.27
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.26
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.26
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.26
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.25
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.25
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.25
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.24
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.24
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.23
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.23
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.22
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.21
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.2
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.2
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.2
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.2
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.19
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.19
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.19
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.19
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.18
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.18
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.17
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.16
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.16
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.15
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.15
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.14
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.14
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.14
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.13
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.13
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.13
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.12
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.12
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.12
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.11
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.11
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.09
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.08
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.08
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.08
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.08
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.07
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.07
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.06
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.05
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.05
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.04
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.04
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.03
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.02
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.02
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.02
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.01
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.01
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.01
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.0
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.0
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.0
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.0
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	97.99
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	97.99
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	97.98
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.98
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	97.98
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.97
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	97.97
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.95
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	97.93
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.92
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	97.92
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	97.92
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	97.92
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	97.92
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	97.92
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.91
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	97.9
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.88
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.88
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.88
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	97.87
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	97.87
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	97.86
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.86
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	97.86
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	97.85
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	97.85
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.85
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.84
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	97.84
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	97.84
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.84
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.84
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	97.84
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.83
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	97.83
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.83
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.81
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	97.81
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	97.8
2esr_A	177	Methyltransferase; structural genomics, hypothetic	97.79
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.79
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	97.79
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.79
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.78
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.78
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.78
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.77
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.77
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	97.77
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.77
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.76
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	97.76
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	97.76
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.76
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	97.75
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.75
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.75
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	97.74
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.74
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.73
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	97.73
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	97.72
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.71
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.7
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	97.7
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	97.7
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.7
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	97.69
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.69
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	97.69
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.69
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	97.68
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.67
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.67
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	97.66
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	97.65
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.64
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.64
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.64
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.63
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	97.62
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.61
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.61
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	97.61
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	97.61
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	97.6
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.6
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	97.6
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	97.6
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.6
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	97.59
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	97.59
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.58
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.57
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.57
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	97.56
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	97.56
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	97.56
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.56
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.55
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.55
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	97.54
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	97.54
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	97.53
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.53
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	97.52
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.52
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.52
3lpm_A	259	Putative methyltransferase; structural genomics, p	97.52
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.51
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.51
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.5
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	97.49
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	97.49
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	97.48
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	97.48
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.47
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	97.47
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	97.47
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.46
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.46
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.45
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.45
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.45
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	97.44
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	97.44
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.41
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	97.41
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.41
2qm3_A	373	Predicted methyltransferase; putative methyltransf	97.41
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.4
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	97.4
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.4
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	97.39
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.39
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	97.38
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	97.38
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.38
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.37
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	97.37
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	97.37
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	97.36
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	97.36
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.35
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.35
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.35
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.33
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	97.33
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.32
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.31
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	97.3
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.3
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.29
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.29
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.28
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	97.28
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.27
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.27
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	97.25
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	97.25
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.24
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	97.24
2pt6_A	321	Spermidine synthase; transferase, structural genom	97.23
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.22
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.22
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	97.22
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.22
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.21
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	97.2
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.2
2esr_A	177	Methyltransferase; structural genomics, hypothetic	97.2
2h00_A	254	Methyltransferase 10 domain containing protein; st	97.19
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.19
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	97.19
2o07_A	304	Spermidine synthase; structural genomics, structur	97.15
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	97.12
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	97.11
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.1
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.08
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	97.08
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	97.06
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.05
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	97.05
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	97.04
2i7c_A	283	Spermidine synthase; transferase, structural genom	97.03
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.03
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.01
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.01
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	96.98
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	96.96
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	96.96
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	96.95
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	96.9
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.89
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	96.86
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	96.84
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	96.82
2h00_A	254	Methyltransferase 10 domain containing protein; st	96.82
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	96.81
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	96.81
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	96.8
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	96.79
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	96.79
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	96.77
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	96.76
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	96.72
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	96.71
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	96.71
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	96.71
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	96.69
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	96.67
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	96.66
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	96.65
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	96.65
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	96.62
2i7c_A	283	Spermidine synthase; transferase, structural genom	96.62
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	96.61
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	96.6
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	96.6
2o07_A	304	Spermidine synthase; structural genomics, structur	96.6
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	96.6
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	96.59
2qm3_A	373	Predicted methyltransferase; putative methyltransf	96.59
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	96.59
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	96.58
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	96.56
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	96.53
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	96.52
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	96.49
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	96.48
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	96.48
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	96.48
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	96.48
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	96.46
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	96.43
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	96.42
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	96.4
2pt6_A	321	Spermidine synthase; transferase, structural genom	96.39
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	96.38
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	96.37
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	96.29
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	96.26
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	96.25
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	96.2
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	96.2
3k6r_A	278	Putative transferase PH0793; structural genomics,	96.16
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	96.13
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	96.13
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	96.12
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	96.11
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	96.11
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	96.1
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	96.09
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	96.06
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	96.03
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	96.0
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	95.9
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	95.89
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	95.88
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	95.87
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	95.86
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	95.86
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	95.85
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	95.73
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	95.56
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	95.53
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	95.51
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	95.41
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	95.4
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	95.38
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	95.27
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	95.1
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	95.05
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	95.05
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	95.04
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	94.99
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	94.94
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	94.86
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	94.7
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	94.65
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	94.38
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	94.37
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	94.3
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	94.18
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	93.96
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	93.86
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.6

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.06  E-value=7.4e-11  Score=111.60  Aligned_cols=74  Identities=19%  Similarity=0.293  Sum_probs=62.7

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS   84 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis   84 (378)
                      +|++++     .|+.|++.|+++ ..+.+.+++++.+||++++||+|+|+.++ ||.+.+ .+++|+.|+|||||.|++.
T Consensus        63 ~v~gvD-----~s~~ml~~a~~~-~~v~~~~~~~e~~~~~~~sfD~v~~~~~~-h~~~~~-~~~~e~~rvLkpgG~l~~~  134 (257)
T 4hg2_A           63 RVHAVD-----PGEAQIRQALRH-PRVTYAVAPAEDTGLPPASVDVAIAAQAM-HWFDLD-RFWAELRRVARPGAVFAAV  134 (257)
T ss_dssp             EEEEEE-----SCHHHHHTCCCC-TTEEEEECCTTCCCCCSSCEEEEEECSCC-TTCCHH-HHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEe-----CcHHhhhhhhhc-CCceeehhhhhhhcccCCcccEEEEeeeh-hHhhHH-HHHHHHHHHcCCCCEEEEE
Confidence            455554     557999988764 46788999999999999999999999987 777766 8999999999999999886


Q ss_pred             cC
Q 017068           85 GP   86 (378)
Q Consensus        85 ~p   86 (378)
                      ..
T Consensus       135 ~~  136 (257)
T 4hg2_A          135 TY  136 (257)
T ss_dssp             EE
T ss_pred             EC
Confidence            54

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.04  E-value=1.3e-10  Score=101.33  Aligned_cols=72  Identities=24%  Similarity=0.259  Sum_probs=63.8

Q ss_pred             CCChHHHHHHHHHcCC-CeEEEEcccCCCCC---CCCceeEEEecCccccc-cCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           14 RDSHKAQIQFALERGI-PAFVAMLGTRRLPF---PAFSFDIVHCSRCLIPF-TAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        14 ~D~se~~vq~A~erg~-~~~~~v~dae~LPf---pd~SFD~V~cs~~l~hw-~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .|.|+.|++.|+++.. .+.+.++|++.+|+   ++++||+|+|+.+++|+ .+.. .+++|+.|+|||||+|++..+
T Consensus        26 vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~-~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           26 VEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSA-EILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCCH-HHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhcccCHH-HHHHHHHHHCCCCEEEEEEcc
Confidence            6899999999999842 47888899999988   89999999999999888 6666 999999999999999999755

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.94  E-value=6.5e-10  Score=102.61  Aligned_cols=71  Identities=23%  Similarity=0.347  Sum_probs=60.9

Q ss_pred             CChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.|+.|++.|+++    +. .+.+.++|++.+||++++||+|+|..+++|+++.. .+++|+.|+|||||+|+++.+
T Consensus        66 D~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~~~~d~~-~~l~~~~r~LkpgG~l~~~~~  141 (260)
T 1vl5_A           66 DLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPA-SFVSEAYRVLKKGGQLLLVDN  141 (260)
T ss_dssp             ESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGGGCSCHH-HHHHHHHHHEEEEEEEEEEEE
T ss_pred             eCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhhHhcCCHH-HHHHHHHHHcCCCCEEEEEEc
Confidence            4557888888775    43 37788999999999999999999999999998877 999999999999999999754

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.87  E-value=2.1e-09  Score=95.82  Aligned_cols=72  Identities=31%  Similarity=0.361  Sum_probs=64.2

Q ss_pred             CCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           14 RDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        14 ~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .|.|+.+++.|+++...+.+..+|.+.+|+++++||+|+|..+++|+.+.. .+++|+.|+|||||+++++.+
T Consensus        62 vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~i~~~  133 (211)
T 2gs9_A           62 VEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVE-RVLLEARRVLRPGGALVVGVL  133 (211)
T ss_dssp             ECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCHH-HHHHHHHHHEEEEEEEEEEEE
T ss_pred             EeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCHH-HHHHHHHHHcCCCCEEEEEec
Confidence            355679999999986567788889999999999999999999999988766 999999999999999999876

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.83  E-value=2.2e-09  Score=95.49  Aligned_cols=134  Identities=14%  Similarity=0.183  Sum_probs=93.9

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccccccccccccC---CCCC-CccccccccCcccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPF---STYP-RTYDLIHVSGIESLIK  300 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f---~typ-rtyDliH~~~~~~~~~  300 (378)
                      ..|||+|||.|.++..|.....   +|+-.|.+ .++..+-+++.+.....-.+.+   +..+ .+||+|.|..++. ..
T Consensus        54 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~  129 (227)
T 3e8s_A           54 ERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQ  129 (227)
T ss_dssp             SEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SS
T ss_pred             CEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-hh
Confidence            7899999999999999998866   66777766 7888888886543322111112   3334 4699999988877 32


Q ss_pred             CCCCCCCCCCccceeeeecccccCCCeEEEeCCH--------------------------------HHHHHHHHHHhcCC
Q 017068          301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP--------------------------------EVIDKVSRIANTVR  348 (378)
Q Consensus       301 ~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~--------------------------------~~~~~~~~~~~~l~  348 (378)
                               +...+|-|+-|+|+|||++++.+..                                -..+++.++++.--
T Consensus       130 ---------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  200 (227)
T 3e8s_A          130 ---------DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAG  200 (227)
T ss_dssp             ---------CCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTT
T ss_pred             ---------hHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcC
Confidence                     3368999999999999999997420                                14678888889989


Q ss_pred             ceEEEecC-CCCCC--CCeEEEEEEec
Q 017068          349 WTAAVHDK-EPGSN--GREKILVATKS  372 (378)
Q Consensus       349 W~~~~~~~-~~~~~--~~e~~l~~~K~  372 (378)
                      +++..... .....  ...-+++++|.
T Consensus       201 f~~~~~~~~~~~~~~~~~~~~~va~k~  227 (227)
T 3e8s_A          201 LRLVSLQEPQHPQSAVPQSLLMVAERH  227 (227)
T ss_dssp             EEEEEEECCCCTTCSSCSCEEEEEEEC
T ss_pred             CeEEEEecCCCCCCCCceeEEEEeecC
Confidence            98875322 11111  23567777773

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.83  E-value=3.1e-09  Score=95.73  Aligned_cols=75  Identities=16%  Similarity=0.116  Sum_probs=64.4

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHh-hcccCCcEEE
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVD-RLLRPGGYLV   82 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~-RVLkPGG~lv   82 (378)
                      +|++++     .|+.+++.|+++.. .+.+..+|++.+ +++++||+|+|..+++|+.++. .+++|+. |+|||||+++
T Consensus        66 ~v~gvD-----~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~~~-~~l~~~~~~~LkpgG~l~  138 (250)
T 2p7i_A           66 DITCVE-----ASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDDPV-ALLKRINDDWLAEGGRLF  138 (250)
T ss_dssp             CEEEEE-----SCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCSSHH-HHHHHHHHTTEEEEEEEE
T ss_pred             cEEEEe-----CCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhcCHH-HHHHHHHHHhcCCCCEEE
Confidence            455554     55799999999855 577888898888 6889999999999999998876 9999999 9999999999


Q ss_pred             EEcC
Q 017068           83 ISGP   86 (378)
Q Consensus        83 is~p   86 (378)
                      ++.+
T Consensus       139 i~~~  142 (250)
T 2p7i_A          139 LVCP  142 (250)
T ss_dssp             EEEE
T ss_pred             EEcC
Confidence            9886

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.83  E-value=2.5e-09  Score=94.74  Aligned_cols=72  Identities=13%  Similarity=0.020  Sum_probs=63.9

Q ss_pred             CChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccC-ChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~-~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.|+.+++.|+++...+.+..+|+..+|+++++||+|+|..+++|++. ....+++++.|+|||||+++++.+
T Consensus        70 D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~  142 (203)
T 3h2b_A           70 EPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFF  142 (203)
T ss_dssp             CCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            455799999999977788999999999999999999999999999873 335999999999999999999865

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.82  E-value=1.2e-09  Score=103.30  Aligned_cols=74  Identities=14%  Similarity=0.017  Sum_probs=58.4

Q ss_pred             CCCCChHHHHHHHHHc-----CCC-eE--EEEcccCCCC------CCCCceeEEEecCccccccCChHHHHHHHhhcccC
Q 017068           12 APRDSHKAQIQFALER-----GIP-AF--VAMLGTRRLP------FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP   77 (378)
Q Consensus        12 ap~D~se~~vq~A~er-----g~~-~~--~~v~dae~LP------fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkP   77 (378)
                      ...|.|+.|++.|+++     +++ +.  +..++++.++      |++++||+|+|+.+++|+.+.. .+|+|+.|+|||
T Consensus        86 ~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~-~~l~~~~r~Lkp  164 (292)
T 2aot_A           86 EVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIP-ATLKFFHSLLGT  164 (292)
T ss_dssp             EEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTCCCCEEEEEEESCGGGCSCHH-HHHHHHHHTEEE
T ss_pred             EEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccCCCceeEEEEeeeeeecCCHH-HHHHHHHHHcCC
Confidence            3456678999998886     332 23  3445555554      7899999999999999998877 999999999999


Q ss_pred             CcEEEEEcC
Q 017068           78 GGYLVISGP   86 (378)
Q Consensus        78 GG~lvis~p   86 (378)
                      ||+|++...
T Consensus       165 gG~l~i~~~  173 (292)
T 2aot_A          165 NAKMLIIVV  173 (292)
T ss_dssp             EEEEEEEEE
T ss_pred             CcEEEEEEe
Confidence            999999754

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.82  E-value=2.3e-09  Score=99.13  Aligned_cols=133  Identities=14%  Similarity=0.121  Sum_probs=96.0

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc--cccccccccccCCCCCCccccccccC-ccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG--LIGVYHDWCEPFSTYPRTYDLIHVSG-IESLIKN  301 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~w~~~f~typrtyDliH~~~-~~~~~~~  301 (378)
                      ..|||+|||+|.++..|.....   +|+-.|.+ ..+..+-++.  +--+..|..+ ++. +.+||+|.|.. +|..+. 
T Consensus        52 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~-~~~-~~~fD~v~~~~~~l~~~~-  125 (263)
T 3pfg_A           52 ASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMRD-FSL-GRRFSAVTCMFSSIGHLA-  125 (263)
T ss_dssp             CEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTT-CCC-SCCEEEEEECTTGGGGSC-
T ss_pred             CcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChHH-CCc-cCCcCEEEEcCchhhhcC-
Confidence            6899999999999999998864   66777766 7788777763  2112233332 333 78999999987 777653 


Q ss_pred             CCCCCCCCCccceeeeecccccCCCeEEEeCC----------------------------------------------H-
Q 017068          302 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS----------------------------------------------P-  334 (378)
Q Consensus       302 ~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~----------------------------------------------~-  334 (378)
                           +.-....+|-++-|+|+|||.+++..-                                              . 
T Consensus       126 -----~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (263)
T 3pfg_A          126 -----GQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPD  200 (263)
T ss_dssp             -----HHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred             -----CHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCC
Confidence                 112345789999999999999999520                                              0 


Q ss_pred             --------------HHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEEEEec
Q 017068          335 --------------EVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       335 --------------~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~  372 (378)
                                    -..++++++++.--+++......   .....+++|+|+
T Consensus       201 ~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~---~~~~~~~va~K~  249 (263)
T 3pfg_A          201 RGITHHEESHRITLFTREQYERAFTAAGLSVEFMPGG---PSGRGLFTGLPG  249 (263)
T ss_dssp             TEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESST---TTSSCEEEEEEC
T ss_pred             CcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCC---CCCceeEEEecC
Confidence                          02688999999988988765433   245679999996

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.82  E-value=4.8e-09  Score=92.82  Aligned_cols=72  Identities=19%  Similarity=0.254  Sum_probs=62.4

Q ss_pred             CCChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           14 RDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .|.|+.+++.|+++    ++  .+.+..+|...+|+++++||+|+|..+++|+.+.. .+++++.|+|||||+++++.+
T Consensus        72 ~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~~~~~  149 (219)
T 3dlc_A           72 LDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVA-TAFREIYRILKSGGKTYIGGG  149 (219)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGCSCHH-HHHHHHHHHEEEEEEEEEEEC
T ss_pred             EECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhhccCHH-HHHHHHHHhCCCCCEEEEEec
Confidence            35557888888887    33  47888999999999999999999999999987666 999999999999999999864

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.81  E-value=1.2e-08  Score=92.35  Aligned_cols=71  Identities=25%  Similarity=0.224  Sum_probs=62.8

Q ss_pred             CChHHHHHHHHHc--CCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER--GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er--g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |+|+.+++.|+++  ...+.+..+|+..+|+++++||+|+|..+++|+.+.. .+++++.|+|||||+++++.+
T Consensus        82 D~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~i~~~  154 (242)
T 3l8d_A           82 DISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPL-RALNEIKRVLKSDGYACIAIL  154 (242)
T ss_dssp             ESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSCHH-HHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhccCHH-HHHHHHHHHhCCCeEEEEEEc
Confidence            4457999999987  3457788999999999999999999999999987776 999999999999999999864

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.80  E-value=3.8e-09  Score=99.36  Aligned_cols=71  Identities=20%  Similarity=0.270  Sum_probs=62.1

Q ss_pred             CChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |+|+.+++.|+++    |+  .+.+..+|...+||++++||+|+|..+++|+.+.. .+++|+.|+|||||+++++.+
T Consensus       112 D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          112 NIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKL-KVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             ESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHH-HHHHHHHHHEEEEEEEEEEEE
T ss_pred             eCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchhhhcCCHH-HHHHHHHHHcCCCeEEEEEEe
Confidence            4457888888775    43  37888999999999999999999999999998866 999999999999999999876

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.79  E-value=4.7e-09  Score=96.13  Aligned_cols=71  Identities=27%  Similarity=0.430  Sum_probs=61.1

Q ss_pred             CChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.|+.+++.|+++    ++ .+.+..+|++.+||++++||+|+|..+++|+.+.. .+++|+.|+|||||++++..+
T Consensus        50 D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~~~~~  125 (239)
T 1xxl_A           50 DATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVR-KAVREVARVLKQDGRFLLVDH  125 (239)
T ss_dssp             ESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGGCSCHH-HHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCchhhccCHH-HHHHHHHHHcCCCcEEEEEEc
Confidence            4456888887765    43 37788899999999999999999999999998776 999999999999999999765

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.78  E-value=7.5e-09  Score=94.72  Aligned_cols=70  Identities=23%  Similarity=0.282  Sum_probs=61.4

Q ss_pred             CCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068           14 RDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS   84 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis   84 (378)
                      .|.|+.+++.|+++    ...+.+..+|++.+|+++++||+|+|..+++|+.+.. .+++|+.|+|||||++++.
T Consensus        67 vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A           67 LDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWP-KVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             EESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGGCTTHH-HHHHHHHHHEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhhcCCHH-HHHHHHHHHCCCCcEEEEE
Confidence            34557999999987    2457888999999999999999999999998887766 9999999999999999987

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.78  E-value=5.1e-09  Score=95.77  Aligned_cols=76  Identities=17%  Similarity=0.264  Sum_probs=64.9

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC---CCeEEEEcccCCCCCCCCceeEEEecCccccc--cCChHHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF--TAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg---~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw--~~~~~~~L~Ev~RVLkPGG   79 (378)
                      .|+++++     |+.+++.|+++.   ..+.+..+|...+|+++++||+|+|..+++|+  .+.. .+++++.|+|||||
T Consensus        80 ~v~~vD~-----s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~-~~l~~~~~~L~pgG  153 (266)
T 3ujc_A           80 HTHGIDI-----CSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKN-KLFQKCYKWLKPTG  153 (266)
T ss_dssp             EEEEEES-----CHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGGGSCHHHHH-HHHHHHHHHEEEEE
T ss_pred             EEEEEeC-----CHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHHhcChHHHH-HHHHHHHHHcCCCC
Confidence            4555554     579999999985   45788899999999999999999999999998  4454 99999999999999


Q ss_pred             EEEEEcC
Q 017068           80 YLVISGP   86 (378)
Q Consensus        80 ~lvis~p   86 (378)
                      +++++.+
T Consensus       154 ~l~~~~~  160 (266)
T 3ujc_A          154 TLLITDY  160 (266)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999865

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.78  E-value=4.6e-09  Score=94.61  Aligned_cols=74  Identities=8%  Similarity=0.006  Sum_probs=59.6

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc-----------------CCCeEEEEcccCCCCCCC-CceeEEEecCccccccCCh-H
Q 017068            5 NILTLSFAPRDSHKAQIQFALER-----------------GIPAFVAMLGTRRLPFPA-FSFDIVHCSRCLIPFTAYN-A   65 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er-----------------g~~~~~~v~dae~LPfpd-~SFD~V~cs~~l~hw~~~~-~   65 (378)
                      .|++++++     +.|++.|+++                 ...+.+.++|+..+|+++ ++||+|+|..+++|++... .
T Consensus        46 ~V~gvD~S-----~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~  120 (203)
T 1pjz_A           46 HVVGAELS-----EAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRE  120 (203)
T ss_dssp             EEEEEEEC-----HHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHH
T ss_pred             eEEEEeCC-----HHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCCEEEEEECcchhhCCHHHHH
Confidence            46666655     6899999886                 235788999999999987 8999999998898886543 4


Q ss_pred             HHHHHHhhcccCCcEEEE
Q 017068           66 TYLIEVDRLLRPGGYLVI   83 (378)
Q Consensus        66 ~~L~Ev~RVLkPGG~lvi   83 (378)
                      .+++|+.|+|||||++++
T Consensus       121 ~~l~~~~r~LkpgG~~~l  138 (203)
T 1pjz_A          121 RYVQHLEALMPQACSGLL  138 (203)
T ss_dssp             HHHHHHHHHSCSEEEEEE
T ss_pred             HHHHHHHHHcCCCcEEEE
Confidence            689999999999998443

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.76  E-value=7.7e-09  Score=94.84  Aligned_cols=76  Identities=12%  Similarity=0.133  Sum_probs=65.2

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC--CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEE
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG--IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLV   82 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg--~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lv   82 (378)
                      .|++++     +|+.+++.|+++.  ..+.+..+|++.+|+++++||+|+|..+++|+.+.. .+++++.|+|||||+++
T Consensus        69 ~v~~vD-----~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~  142 (253)
T 3g5l_A           69 KVLGID-----LSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFD-DICKKVYINLKSSGSFI  142 (253)
T ss_dssp             EEEEEE-----SCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCSCHH-HHHHHHHHHEEEEEEEE
T ss_pred             EEEEEE-----CCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhhhHH-HHHHHHHHHcCCCcEEE
Confidence            455555     4579999999984  357888999999999999999999999999987666 99999999999999999


Q ss_pred             EEcC
Q 017068           83 ISGP   86 (378)
Q Consensus        83 is~p   86 (378)
                      ++.+
T Consensus       143 ~~~~  146 (253)
T 3g5l_A          143 FSVE  146 (253)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            9865

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.76  E-value=9.4e-09  Score=94.06  Aligned_cols=75  Identities=15%  Similarity=0.161  Sum_probs=63.1

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG   78 (378)
                      .|+++++     |+.+++.|+++    |+  .+.+..+|++.+|+ +++||+|+|..+++|+.+.. .+|+|+.|+||||
T Consensus        61 ~v~gvD~-----s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~~~~~~~~~~-~~l~~~~r~Lkpg  133 (256)
T 1nkv_A           61 TGTGIDM-----SSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVGATWIAGGFA-GAEELLAQSLKPG  133 (256)
T ss_dssp             EEEEEES-----CHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEESCGGGTSSSH-HHHHHHTTSEEEE
T ss_pred             eEEEEeC-----CHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEECCChHhcCCHH-HHHHHHHHHcCCC
Confidence            4555554     56888888765    44  37888999999998 89999999999999988877 9999999999999


Q ss_pred             cEEEEEcC
Q 017068           79 GYLVISGP   86 (378)
Q Consensus        79 G~lvis~p   86 (378)
                      |+++++.+
T Consensus       134 G~l~~~~~  141 (256)
T 1nkv_A          134 GIMLIGEP  141 (256)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEecC
Confidence            99999865

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.76  E-value=8.4e-09  Score=94.35  Aligned_cols=75  Identities=16%  Similarity=0.114  Sum_probs=65.3

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS   84 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis   84 (378)
                      .|+++++     |+.|++.|+++...+.+..+|++.+| ++++||+|+|..+++|+.+.. .+++++.|+|||||+++++
T Consensus        59 ~v~~~D~-----s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~~~  131 (259)
T 2p35_A           59 VITGIDS-----DDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQWVPDHL-AVLSQLMDQLESGGVLAVQ  131 (259)
T ss_dssp             SEEEEES-----CHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGGSTTHH-HHHHHHGGGEEEEEEEEEE
T ss_pred             EEEEEEC-----CHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhhCCCHH-HHHHHHHHhcCCCeEEEEE
Confidence            4666655     46999999998666888999999999 899999999999998887666 9999999999999999998


Q ss_pred             cC
Q 017068           85 GP   86 (378)
Q Consensus        85 ~p   86 (378)
                      .+
T Consensus       132 ~~  133 (259)
T 2p35_A          132 MP  133 (259)
T ss_dssp             EE
T ss_pred             eC
Confidence            76

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.75  E-value=9.4e-09  Score=95.11  Aligned_cols=76  Identities=29%  Similarity=0.406  Sum_probs=64.3

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG   78 (378)
                      .|++++     .|+.+++.|+++    ++  .+.+..+|...+||++++||+|+|..+++|+.+.. .+++++.|+||||
T Consensus        86 ~v~gvD-----~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~l~~~~~~L~pg  159 (273)
T 3bus_A           86 RVTGIS-----ISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRG-RALREMARVLRPG  159 (273)
T ss_dssp             EEEEEE-----SCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSCHH-HHHHHHHTTEEEE
T ss_pred             EEEEEe-----CCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhhhCCCHH-HHHHHHHHHcCCC
Confidence            455554     456888888775    44  37888899999999999999999999999988776 9999999999999


Q ss_pred             cEEEEEcC
Q 017068           79 GYLVISGP   86 (378)
Q Consensus        79 G~lvis~p   86 (378)
                      |+++++.+
T Consensus       160 G~l~i~~~  167 (273)
T 3bus_A          160 GTVAIADF  167 (273)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEe
Confidence            99999865

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.72  E-value=1.9e-09  Score=94.46  Aligned_cols=116  Identities=16%  Similarity=0.227  Sum_probs=79.5

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc--cc-ccccccccCCCCCCccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL--IG-VYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig-~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      .+|||+|||.|.++..|.....   +|+-.|.+ ..+..+-++    |+  +- ...|..+ ++. +.+||+|.|..++.
T Consensus        34 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~D~v~~~~~l~  108 (199)
T 2xvm_A           34 GKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNN-LTF-DRQYDFILSTVVLM  108 (199)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGG-CCC-CCCEEEEEEESCGG
T ss_pred             CeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhh-CCC-CCCceEEEEcchhh
Confidence            4899999999999999987765   66666765 566554443    33  21 2233333 333 78999999998887


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEeCC--------------HHHHHHHHHHHhcCCceEEEec
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS--------------PEVIDKVSRIANTVRWTAAVHD  355 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~--------------~~~~~~~~~~~~~l~W~~~~~~  355 (378)
                      ...       .-....+|-++-|+|+|||++++.+.              .-..++++++.+.  |++....
T Consensus       109 ~~~-------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~  171 (199)
T 2xvm_A          109 FLE-------AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYN  171 (199)
T ss_dssp             GSC-------GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred             hCC-------HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEec
Confidence            653       22346799999999999999877531              0134566777666  8876543

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.72  E-value=3.7e-09  Score=93.60  Aligned_cols=134  Identities=12%  Similarity=0.083  Sum_probs=96.2

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-cc-ccccccccCCCCCCccccccccCccccccCC
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-IG-VYHDWCEPFSTYPRTYDLIHVSGIESLIKNP  302 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig-~~~~w~~~f~typrtyDliH~~~~~~~~~~~  302 (378)
                      ..|||+|||.|.++..|.....   +|+-.|.+ .++..+-++.- +- +..|..+ ++..+.+||+|.|..++..+.  
T Consensus        43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~--  116 (203)
T 3h2b_A           43 GVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTITD-LSDSPKRWAGLLAWYSLIHMG--  116 (203)
T ss_dssp             SCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCGGG-GGGSCCCEEEEEEESSSTTCC--
T ss_pred             CeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCcccc-cccCCCCeEEEEehhhHhcCC--
Confidence            5799999999999999988755   56777766 77887777732 11 2223322 333348999999998887653  


Q ss_pred             CCCCCCCCccceeeeecccccCCCeEEEeCCH----------------HHHHHHHHHHhcCCceEEEecCCCCCCCCeEE
Q 017068          303 GSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----------------EVIDKVSRIANTVRWTAAVHDKEPGSNGREKI  366 (378)
Q Consensus       303 ~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~----------------~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~  366 (378)
                           .-+...+|-|+-|+|+|||++++....                -..+++.++++..-|++.......+  .....
T Consensus       117 -----~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~--~p~~~  189 (203)
T 3h2b_A          117 -----PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR--FPHAY  189 (203)
T ss_dssp             -----TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT--SSEEE
T ss_pred             -----HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC--Ccchh
Confidence                 234578999999999999999997521                2367888899999999886654433  45666


Q ss_pred             EEEEec
Q 017068          367 LVATKS  372 (378)
Q Consensus       367 l~~~K~  372 (378)
                      |...|+
T Consensus       190 l~~~~~  195 (203)
T 3h2b_A          190 LTAEAS  195 (203)
T ss_dssp             EEEEEC
T ss_pred             hhhhhh
Confidence            665554

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.71  E-value=1.1e-08  Score=95.63  Aligned_cols=70  Identities=16%  Similarity=0.135  Sum_probs=61.5

Q ss_pred             CChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.|+.|++.|+++...+.+.++|++.+|+ +++||+|+|..+++|+.+.. .+++|+.|+|||||+++++.+
T Consensus        86 D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~d~~-~~l~~~~~~LkpgG~l~~~~~  155 (279)
T 3ccf_A           86 DNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAMLHWVKEPE-AAIASIHQALKSGGRFVAEFG  155 (279)
T ss_dssp             ESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEESCGGGCSCHH-HHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcchhhhCcCHH-HHHHHHHHhcCCCcEEEEEec
Confidence            45579999999986567788899999998 68999999999998887776 999999999999999999876

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.70  E-value=1.3e-08  Score=90.98  Aligned_cols=72  Identities=15%  Similarity=0.151  Sum_probs=62.0

Q ss_pred             CCChHHHHHHHHHcCC-CeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           14 RDSHKAQIQFALERGI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        14 ~D~se~~vq~A~erg~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .|.|+.+++.|+++.. .+.+..+|+..+|++ ++||+|+|..+++|+.++. ..+++++.|+|||||+++++.+
T Consensus        73 vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  146 (220)
T 3hnr_A           73 IEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADT  146 (220)
T ss_dssp             ECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            3556799999999854 567888899999999 9999999999999988766 2399999999999999999875

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.69  E-value=1.7e-08  Score=92.30  Aligned_cols=75  Identities=16%  Similarity=0.273  Sum_probs=62.8

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG   78 (378)
                      .|++++++     +.+++.|+++    |++  +.+..+|++.+|+++++||+|+|..+++|+ +.. .+++++.|+||||
T Consensus        71 ~v~~vD~s-----~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~-~~l~~~~~~L~pg  143 (257)
T 3f4k_A           71 QITGIDLF-----PDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNI-GFE-RGMNEWSKYLKKG  143 (257)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCSCCC-CHH-HHHHHHHTTEEEE
T ss_pred             eEEEEECC-----HHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChHhhc-CHH-HHHHHHHHHcCCC
Confidence            45666555     6788887775    443  778899999999999999999999999887 555 9999999999999


Q ss_pred             cEEEEEcC
Q 017068           79 GYLVISGP   86 (378)
Q Consensus        79 G~lvis~p   86 (378)
                      |+++++.+
T Consensus       144 G~l~~~~~  151 (257)
T 3f4k_A          144 GFIAVSEA  151 (257)
T ss_dssp             EEEEEEEE
T ss_pred             cEEEEEEe
Confidence            99999875

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.69  E-value=1.2e-08  Score=90.39  Aligned_cols=77  Identities=19%  Similarity=0.237  Sum_probs=62.1

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccC-ChHHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~-~~~~~L~Ev~RVLkPGG   79 (378)
                      .|+++++     |+.+++.|+++    +..+.+..+|+..+|+++++||+|+|..+++|+.. ....+++++.|+|||||
T Consensus        48 ~v~~vD~-----s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG  122 (209)
T 2p8j_A           48 KTYGIEI-----SDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGG  122 (209)
T ss_dssp             EEEEEEC-----CHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             EEEEEEC-----CHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCc
Confidence            3555554     56888887765    45567888899999999999999999999999842 22489999999999999


Q ss_pred             EEEEEcC
Q 017068           80 YLVISGP   86 (378)
Q Consensus        80 ~lvis~p   86 (378)
                      +++++.+
T Consensus       123 ~l~~~~~  129 (209)
T 2p8j_A          123 LACINFL  129 (209)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999765

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.69  E-value=1.5e-09  Score=102.53  Aligned_cols=93  Identities=13%  Similarity=0.050  Sum_probs=67.9

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccccccccccccCCCCCCccccccccCccccccCCCC
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGS  304 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~  304 (378)
                      .+|||+|||+|.++..|.++.-   +|+.+|.+ .++..+-++.=+-..+.=-|.+|.-+.+||+|.|..+|. |.    
T Consensus        41 ~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h-~~----  112 (257)
T 4hg2_A           41 GDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMH-WF----  112 (257)
T ss_dssp             SEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCT-TC----
T ss_pred             CCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehh-Hh----
Confidence            4799999999999999988765   56777766 777765544323322222344554458999999998884 33    


Q ss_pred             CCCCCCccceeeeecccccCCCeEEEe
Q 017068          305 NKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       305 ~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                           +....+-|+.|||||||.+++-
T Consensus       113 -----~~~~~~~e~~rvLkpgG~l~~~  134 (257)
T 4hg2_A          113 -----DLDRFWAELRRVARPGAVFAAV  134 (257)
T ss_dssp             -----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----hHHHHHHHHHHHcCCCCEEEEE
Confidence                 2357899999999999999775

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.68  E-value=2.1e-08  Score=90.39  Aligned_cols=96  Identities=20%  Similarity=0.254  Sum_probs=68.3

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc-cc-ccccccccCCCCCCccccccccC-cc
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IG-VYHDWCEPFSTYPRTYDLIHVSG-IE  296 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig-~~~~w~~~f~typrtyDliH~~~-~~  296 (378)
                      -..|||+|||.|.++..|.....   +++-.|.+ .++..+-++    |+ +- ...|..+ ++ ++.+||+|.|.. +|
T Consensus        38 ~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~~l  112 (246)
T 1y8c_A           38 FDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN-LN-INRKFDLITCCLDST  112 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG-CC-CSCCEEEEEECTTGG
T ss_pred             CCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEeccccc-CC-ccCCceEEEEcCccc
Confidence            35899999999999999988764   56777765 677666555    21 11 1223222 22 348999999998 88


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      .++.      ..-....+|-++-|+|+|||.+++.
T Consensus       113 ~~~~------~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A          113 NYII------DSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             GGCC------SHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cccC------CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            7663      1123468899999999999999983

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.68  E-value=5.2e-09  Score=99.10  Aligned_cols=102  Identities=13%  Similarity=0.131  Sum_probs=73.7

Q ss_pred             CeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh----ccc----cccccccccCCCCCCcccccccc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GLI----GVYHDWCEPFSTYPRTYDLIHVS  293 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gli----g~~~~w~~~f~typrtyDliH~~  293 (378)
                      .-..|||+|||.|+++..|... +.   +|+-.|.+ .++..+-++    |+-    -...|..+ +   +.+||+|.+.
T Consensus        72 ~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~---~~~fD~v~~~  144 (302)
T 3hem_A           72 PGMTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE-F---DEPVDRIVSL  144 (302)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG-C---CCCCSEEEEE
T ss_pred             CcCEEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH-c---CCCccEEEEc
Confidence            3458999999999999999876 64   56777765 777776665    432    12334432 2   7899999999


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .+|....++......-....+|-|+-|+|+|||.+++.+
T Consensus       145 ~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  183 (302)
T 3hem_A          145 GAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  183 (302)
T ss_dssp             SCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred             chHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            999887533211122345689999999999999999975

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.68  E-value=4.6e-09  Score=98.29  Aligned_cols=94  Identities=15%  Similarity=0.173  Sum_probs=68.8

Q ss_pred             eeEEEecCCcceeeeeecc-CCCeeEEEeccCCCC-cchHHHHhh----ccc---c-ccccccccCCCCCCccccccccC
Q 017068          225 IRNIMDMNAFFGGFAAALT-SDPVWVMNVVPARKS-STLSVIYDR----GLI---G-VYHDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~-~~~vwvmnv~p~~~~-~~l~~i~eR----Gli---g-~~~~w~~~f~typrtyDliH~~~  294 (378)
                      -..|||+|||.|+++..|. ..+.   +|+-.|.+ .++..+-++    |+.   - ...|.. .   +|.+||+|+|..
T Consensus        65 ~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~---~~~~fD~v~~~~  137 (287)
T 1kpg_A           65 GMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE-Q---FDEPVDRIVSIG  137 (287)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG-G---CCCCCSEEEEES
T ss_pred             cCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh-h---CCCCeeEEEEeC
Confidence            3589999999999998887 4454   56666765 777776665    432   1 223332 2   348999999999


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      +|..+.       .-+...+|-|+-|+|+|||.+++.+
T Consensus       138 ~l~~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          138 AFEHFG-------HERYDAFFSLAHRLLPADGVMLLHT  168 (287)
T ss_dssp             CGGGTC-------TTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             chhhcC-------hHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            988763       1234689999999999999999975

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.67  E-value=1.9e-08  Score=95.00  Aligned_cols=75  Identities=21%  Similarity=0.212  Sum_probs=60.5

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----C--CCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----G--IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRP   77 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g--~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkP   77 (378)
                      .|+++++     |+.|++.|+++    +  .++.+..+|+..+|++  .||+|+|.++++|+++.+ ..+|+|++|+|||
T Consensus        98 ~v~gvD~-----s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~Lkp  170 (261)
T 4gek_A           98 KIIAIDN-----SPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNP  170 (261)
T ss_dssp             EEEEEES-----CHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred             EEEEEEC-----CHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceeeeeeeecCchhHhHHHHHHHHHcCC
Confidence            3555554     57999999886    2  3567888999998885  499999999998876544 4689999999999


Q ss_pred             CcEEEEEcC
Q 017068           78 GGYLVISGP   86 (378)
Q Consensus        78 GG~lvis~p   86 (378)
                      ||.|+++.+
T Consensus       171 GG~lii~e~  179 (261)
T 4gek_A          171 GGALVLSEK  179 (261)
T ss_dssp             EEEEEEEEE
T ss_pred             CcEEEEEec
Confidence            999999865

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.67  E-value=2.2e-08  Score=90.57  Aligned_cols=71  Identities=24%  Similarity=0.239  Sum_probs=62.2

Q ss_pred             CChHHHHHHHHHcCC--CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALERGI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~erg~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.|+.+++.|+++..  .+.+..+|...+|+++++||+|+|..+++|+.+.. .+++++.|+|||||+++++.+
T Consensus        73 D~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A           73 DLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVA-RLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             ESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGCSCHH-HHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccccccchHH-HHHHHHHHhcCcCcEEEEEeC
Confidence            455799999998853  36788889999999999999999999999987766 999999999999999999875

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.66  E-value=1.2e-08  Score=93.18  Aligned_cols=70  Identities=19%  Similarity=0.175  Sum_probs=60.0

Q ss_pred             CCChHHHHHHHHHcCCCeEEEEcccCCC--CCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           14 RDSHKAQIQFALERGIPAFVAMLGTRRL--PFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        14 ~D~se~~vq~A~erg~~~~~~v~dae~L--Pfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .|+|+.+++.|+++   +.+..+|...+  ||++++||+|+|..+++|+.++. ..+++++.|+|||||+++++.+
T Consensus        69 vD~s~~~~~~a~~~---~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (240)
T 3dli_A           69 VDINEDMIKFCEGK---FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESP  141 (240)
T ss_dssp             ECSCHHHHHHHHTT---SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEE
T ss_pred             EECCHHHHHHHHhh---cceeeccHHHHhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            35567999999988   56777787665  89999999999999999998652 4999999999999999999876

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.66  E-value=1.4e-08  Score=92.50  Aligned_cols=72  Identities=14%  Similarity=0.220  Sum_probs=61.4

Q ss_pred             CChHHHHHHHHHcCC---CeEEEEcccCCCCCCCCceeEEEecCccccccCC-hHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALERGI---PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~erg~---~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~-~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.|+.+++.|+++..   .+.+..+|.+.+|+++++||+|+|..+++|+++. ...+++++.|+|||||+++++.+
T Consensus       123 D~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          123 EPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             ESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            445799999998752   4678888999999999999999999999998652 24899999999999999999874

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.65  E-value=2.3e-08  Score=86.00  Aligned_cols=71  Identities=15%  Similarity=0.105  Sum_probs=61.0

Q ss_pred             CCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           12 APRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        12 ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      ...|.++.+++.|+++...+.+..+|   +|+++++||+|+|..+++|+.+.. .+++++.|+|||||++++...
T Consensus        43 ~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~~~~~  113 (170)
T 3i9f_A           43 YCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDMDDKQ-HVISEVKRILKDDGRVIIIDW  113 (170)
T ss_dssp             EEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTCSCHH-HHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhcccCHH-HHHHHHHHhcCCCCEEEEEEc
Confidence            34456679999999986567777777   899999999999999999997766 999999999999999999754

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.65  E-value=2.4e-08  Score=92.56  Aligned_cols=71  Identities=25%  Similarity=0.434  Sum_probs=61.5

Q ss_pred             CChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.|+.+++.|+++... .+..+|++.+|+++++||+|+|..++.|+..+...+++|+.|+|||||+++++.+
T Consensus        83 D~s~~~l~~a~~~~~~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  153 (260)
T 2avn_A           83 DPSKEMLEVAREKGVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD  153 (260)
T ss_dssp             ESCHHHHHHHHHHTCS-CEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eCCHHHHHHHHhhcCC-CEEECcHHHCCCCCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeC
Confidence            4557999999998653 3778899999999999999999988889865555999999999999999999876

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.65  E-value=2.7e-08  Score=98.28  Aligned_cols=76  Identities=24%  Similarity=0.204  Sum_probs=64.9

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc---------C----CCeEEEEcccCCC------CCCCCceeEEEecCccccccCChH
Q 017068            5 NILTLSFAPRDSHKAQIQFALER---------G----IPAFVAMLGTRRL------PFPAFSFDIVHCSRCLIPFTAYNA   65 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er---------g----~~~~~~v~dae~L------Pfpd~SFD~V~cs~~l~hw~~~~~   65 (378)
                      .|+++++     |+.+++.|+++         |    ..+.+..+|++.+      ||++++||+|+|..+++|+.+.. 
T Consensus       110 ~v~gvD~-----s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~d~~-  183 (383)
T 4fsd_A          110 KVIGVDM-----LDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKL-  183 (383)
T ss_dssp             EEEEEEC-----CHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCCTTCEEEEEEESCGGGCSCHH-
T ss_pred             EEEEEEC-----CHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCCCCCEEEEEEccchhcCCCHH-
Confidence            4555555     46899999886         4    4678889999887      99999999999999998887766 


Q ss_pred             HHHHHHhhcccCCcEEEEEcC
Q 017068           66 TYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        66 ~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .+++|+.|+|||||+|+++.+
T Consensus       184 ~~l~~~~r~LkpgG~l~i~~~  204 (383)
T 4fsd_A          184 ALFKEIHRVLRDGGELYFSDV  204 (383)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHcCCCCEEEEEEe
Confidence            999999999999999999754

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.65  E-value=2.9e-08  Score=89.55  Aligned_cols=70  Identities=24%  Similarity=0.310  Sum_probs=62.0

Q ss_pred             CCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           14 RDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        14 ~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .|.|+.+++.|+++  .+.+..++.+.+|+++++||+|+|..+++|+.+.. .+++++.|+|||||+++++.+
T Consensus        71 vD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~i~~~  140 (219)
T 1vlm_A           71 VEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPE-RALKEAYRILKKGGYLIVGIV  140 (219)
T ss_dssp             EESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHH-HHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhhccCHH-HHHHHHHHHcCCCcEEEEEEe
Confidence            35668999999998  45677889999999999999999999999987766 999999999999999999876

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.64  E-value=2.3e-08  Score=88.73  Aligned_cols=71  Identities=17%  Similarity=0.132  Sum_probs=61.7

Q ss_pred             CChHHHHHHHHHcC-CCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALERG-IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~erg-~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.|+.+++.|++.+ ..+.+..+|...+ +++++||+|+|+.+++|++++. ..+++++.|+|||||+++++.+
T Consensus        75 D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A           75 DGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             ESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            44579999999987 4577888999888 8999999999999999988752 4899999999999999999865

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.64  E-value=2.8e-08  Score=92.14  Aligned_cols=75  Identities=21%  Similarity=0.345  Sum_probs=63.2

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG   78 (378)
                      .|++++++     +.+++.|+++    +++  +.+..+|.+.+|+++++||+|+|..+++|+ +.. .+++++.|+||||
T Consensus        71 ~v~gvD~s-----~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~-~~l~~~~~~Lkpg  143 (267)
T 3kkz_A           71 QVTGLDFL-----SGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNI-GFE-RGLNEWRKYLKKG  143 (267)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCGGGT-CHH-HHHHHHGGGEEEE
T ss_pred             EEEEEeCC-----HHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCceec-CHH-HHHHHHHHHcCCC
Confidence            45666554     6888888775    443  788999999999999999999999999888 555 9999999999999


Q ss_pred             cEEEEEcC
Q 017068           79 GYLVISGP   86 (378)
Q Consensus        79 G~lvis~p   86 (378)
                      |+++++.+
T Consensus       144 G~l~~~~~  151 (267)
T 3kkz_A          144 GYLAVSEC  151 (267)
T ss_dssp             EEEEEEEE
T ss_pred             CEEEEEEe
Confidence            99999865

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.63  E-value=8.9e-09  Score=92.72  Aligned_cols=92  Identities=21%  Similarity=0.359  Sum_probs=68.9

Q ss_pred             EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh---ccccccccccccCCCCCCccccccccCccccccCC
Q 017068          227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR---GLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNP  302 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR---Glig~~~~w~~~f~typrtyDliH~~~~~~~~~~~  302 (378)
                      .|||+|||+|.++..|.+..-   +|+-.|.+ ..+..+-++   ++--...|..+.  ..+.+||+|+|..++....  
T Consensus        45 ~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~--~~~~~fD~v~~~~~l~~~~--  117 (250)
T 2p7i_A           45 NLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA--QLPRRYDNIVLTHVLEHID--  117 (250)
T ss_dssp             CEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC--CCSSCEEEEEEESCGGGCS--
T ss_pred             cEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc--CcCCcccEEEEhhHHHhhc--
Confidence            599999999999999987654   56666766 777777666   332222333332  2358999999999988764  


Q ss_pred             CCCCCCCCccceeeeec-ccccCCCeEEEeC
Q 017068          303 GSNKNSCSLVDLMVEMD-RMLRPEGTVVVRD  332 (378)
Q Consensus       303 ~~~~~~c~~~~~l~EmD-RiLRPgG~~ii~d  332 (378)
                             +...+|-|+- |+|+|||++++..
T Consensus       118 -------~~~~~l~~~~~~~LkpgG~l~i~~  141 (250)
T 2p7i_A          118 -------DPVALLKRINDDWLAEGGRLFLVC  141 (250)
T ss_dssp             -------SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             -------CHHHHHHHHHHHhcCCCCEEEEEc
Confidence                   2367999999 9999999999975

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.63  E-value=6.5e-08  Score=86.47  Aligned_cols=150  Identities=15%  Similarity=0.188  Sum_probs=95.0

Q ss_pred             cccccchHHHHHHHHHHHHHh-----------hhhc-CCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCCcchHH
Q 017068          196 DVFEADSRRWRRRVAYYKNTL-----------NVKL-GTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSV  263 (378)
Q Consensus       196 ~~F~~d~~~w~~~v~~Y~~~~-----------~~~~-~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~~~l~~  263 (378)
                      +.|..+...|......|....           ...+ ....-.+|||+|||+|.++..|. ..|..+-+.+.    .+.+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~----~~~~  101 (215)
T 2zfu_A           27 RLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIR-NPVHCFDLASL----DPRV  101 (215)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-SCEEEEESSCS----STTE
T ss_pred             HHHHHhHHHHHHHHHHHHhhhcccchhHHHHHHHHHhccCCCCeEEEECCcCCHHHHHhh-ccEEEEeCCCC----CceE
Confidence            457777778877666664421           1111 11233579999999999998884 33433322222    1111


Q ss_pred             HHhhccccccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHH---HHHHH
Q 017068          264 IYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPE---VIDKV  340 (378)
Q Consensus       264 i~eRGlig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~---~~~~~  340 (378)
                              ...|..+ ++.-+.+||+|.|..++. +.         +...+|-|+-|+|+|||.+++.+...   ..+++
T Consensus       102 --------~~~d~~~-~~~~~~~fD~v~~~~~l~-~~---------~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~  162 (215)
T 2zfu_A          102 --------TVCDMAQ-VPLEDESVDVAVFCLSLM-GT---------NIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTF  162 (215)
T ss_dssp             --------EESCTTS-CSCCTTCEEEEEEESCCC-SS---------CHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHH
T ss_pred             --------EEecccc-CCCCCCCEeEEEEehhcc-cc---------CHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHH
Confidence                    1122222 332247999999988774 22         34689999999999999999987543   56778


Q ss_pred             HHHHhcCCceEEEecCCCCCCCCeEEEEEEec
Q 017068          341 SRIANTVRWTAAVHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       341 ~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~  372 (378)
                      .++++..-++....+...   ..-.+++++|.
T Consensus       163 ~~~l~~~Gf~~~~~~~~~---~~~~~~~~~k~  191 (215)
T 2zfu_A          163 LRAVTKLGFKIVSKDLTN---SHFFLFDFQKT  191 (215)
T ss_dssp             HHHHHHTTEEEEEEECCS---TTCEEEEEEEC
T ss_pred             HHHHHHCCCEEEEEecCC---CeEEEEEEEec
Confidence            888888888877654332   34578888885

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.63  E-value=3.9e-08  Score=87.84  Aligned_cols=103  Identities=14%  Similarity=0.219  Sum_probs=74.4

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      .|++++++     +.+++.|+++    ++ .+.+..+|...+|+++++||+|+|..+++|+.+.. .+++++.|+|||||
T Consensus        64 ~v~~vD~s-----~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~l~~~~~~LkpgG  137 (219)
T 3dh0_A           64 KVYAIDVQ-----EEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPL-KFLEELKRVAKPFA  137 (219)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESCGGGCSSHH-HHHHHHHHHEEEEE
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehhhhhcCCHH-HHHHHHHHHhCCCe
Confidence            45666554     6788888775    43 47888999999999999999999999999997766 99999999999999


Q ss_pred             EEEEEcCCCCC--C-cc-c--hHHHHHHHHHHHhceeeec
Q 017068           80 YLVISGPPVQW--P-KQ-D--KEWADLQAVARALCYELIA  113 (378)
Q Consensus        80 ~lvis~pp~~~--~-~~-~--~~w~~l~~l~~~lcw~~~~  113 (378)
                      +++++......  . .. .  ..-..+..+.+...++.+.
T Consensus       138 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  177 (219)
T 3dh0_A          138 YLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGR  177 (219)
T ss_dssp             EEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEE
T ss_pred             EEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEE
Confidence            99997541111  0 00 0  1124466666665665443

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.62  E-value=4.1e-08  Score=88.00  Aligned_cols=157  Identities=14%  Similarity=0.113  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh------------cc
Q 017068          203 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR------------GL  269 (378)
Q Consensus       203 ~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR------------Gl  269 (378)
                      ...+.+.+...+.+..    ..-..|||+|||+|.++..|....- .-+|+-.|.+ ..+..+-++            .+
T Consensus        12 ~~~~~~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v   86 (219)
T 3jwg_A           12 NLNQQRLGTVVAVLKS----VNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRI   86 (219)
T ss_dssp             CHHHHHHHHHHHHHHH----TTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTE
T ss_pred             cchHHHHHHHHHHHhh----cCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcce
Confidence            3444454444443331    2345899999999999999987531 1255666665 677666555            22


Q ss_pred             ccccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHH--------------
Q 017068          270 IGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPE--------------  335 (378)
Q Consensus       270 ig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~--------------  335 (378)
                      -=+..|. +..+..+.+||+|.|..++..+.       .-.+..+|-|+-|+|+|||.++......              
T Consensus        87 ~~~~~d~-~~~~~~~~~fD~V~~~~~l~~~~-------~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~  158 (219)
T 3jwg_A           87 SLFQSSL-VYRDKRFSGYDAATVIEVIEHLD-------ENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLR  158 (219)
T ss_dssp             EEEECCS-SSCCGGGTTCSEEEEESCGGGCC-------HHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----G
T ss_pred             EEEeCcc-cccccccCCCCEEEEHHHHHhCC-------HHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCccccc
Confidence            1122233 22222247999999999988764       1123578999999999999877653211              


Q ss_pred             --------HHHHH----HHHHhcCCceEEEe---cCCCCCCCCeEEEEEEec
Q 017068          336 --------VIDKV----SRIANTVRWTAAVH---DKEPGSNGREKILVATKS  372 (378)
Q Consensus       336 --------~~~~~----~~~~~~l~W~~~~~---~~~~~~~~~e~~l~~~K~  372 (378)
                              ..+++    +++++.--+++...   +..+.-.....+.|++|+
T Consensus       159 ~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~~~~~g~~~qi~~~~~~  210 (219)
T 3jwg_A          159 HRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQIGEIDDEFGSPTQMGVFTLG  210 (219)
T ss_dssp             GGCCTTSBCHHHHHHHHHHHHHHHTEEEEEEEESCCCTTSCCSEEEEEEEEC
T ss_pred             ccCceeeecHHHHHHHHHHHHHHCCcEEEEEecCCccccCCCCeEEEEEecc
Confidence                    12233    37777777887764   222223356789999886

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.62  E-value=1.7e-08  Score=93.74  Aligned_cols=69  Identities=19%  Similarity=0.133  Sum_probs=60.3

Q ss_pred             CChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |+|+.|++.|+++. .+.+.++|++.+||++++||+|+|..+++|+.+.. .+++|+.|+|| ||++++..+
T Consensus        63 D~s~~~~~~a~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A           63 EPSIVMRQQAVVHP-QVEWFTGYAENLALPDKSVDGVISILAIHHFSHLE-KSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             CSCHHHHHSSCCCT-TEEEECCCTTSCCSCTTCBSEEEEESCGGGCSSHH-HHHHHHHHHBC-SSCEEEEEE
T ss_pred             eCCHHHHHHHHhcc-CCEEEECchhhCCCCCCCEeEEEEcchHhhccCHH-HHHHHHHHHhC-CcEEEEEEc
Confidence            44568998887775 78889999999999999999999999999997776 99999999999 998877654

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.60  E-value=3.4e-08  Score=93.34  Aligned_cols=73  Identities=15%  Similarity=0.178  Sum_probs=61.6

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc-------CCCeEEEEcccCCCCCCC------CceeEEEecCccccccCChHHHHHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALER-------GIPAFVAMLGTRRLPFPA------FSFDIVHCSRCLIPFTAYNATYLIEV   71 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er-------g~~~~~~v~dae~LPfpd------~SFD~V~cs~~l~hw~~~~~~~L~Ev   71 (378)
                      .|+++++     |+.|++.|+++       ...+.+.++|++.+|+++      ++||+|+|+.+++|+ +.. .+++++
T Consensus        63 ~v~gvD~-----s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~-~~l~~~  135 (299)
T 3g5t_A           63 QIIGSDL-----SATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-DFE-KFQRSA  135 (299)
T ss_dssp             EEEEEES-----CHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-CHH-HHHHHH
T ss_pred             EEEEEeC-----CHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh-CHH-HHHHHH
Confidence            4555554     56899998886       346788999999999988      999999999999888 555 999999


Q ss_pred             hhcccCCcEEEEE
Q 017068           72 DRLLRPGGYLVIS   84 (378)
Q Consensus        72 ~RVLkPGG~lvis   84 (378)
                      .|+|||||+|++.
T Consensus       136 ~~~LkpgG~l~i~  148 (299)
T 3g5t_A          136 YANLRKDGTIAIW  148 (299)
T ss_dssp             HHHEEEEEEEEEE
T ss_pred             HHhcCCCcEEEEE
Confidence            9999999999983

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.60  E-value=2.2e-08  Score=93.73  Aligned_cols=71  Identities=18%  Similarity=0.154  Sum_probs=61.3

Q ss_pred             CChHHHHHHHHHc----CC--CeEEEEcccCCCC-CCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GI--PAFVAMLGTRRLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~--~~~~~v~dae~LP-fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |+|+.+++.|+++    ++  .+.+..+|++.+| +++++||+|+|..+++|+.+.. .+++|+.|+|||||++++..+
T Consensus        97 D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A           97 DLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLEWVADPR-SVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             ESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGGGCSCHH-HHHHHHHHTEEEEEEEEEEEE
T ss_pred             ECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhhcccCHH-HHHHHHHHHcCCCeEEEEEEe
Confidence            4456888888876    43  3678889999998 8999999999999999998776 999999999999999999865

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.60  E-value=4.1e-08  Score=88.75  Aligned_cols=76  Identities=9%  Similarity=0.106  Sum_probs=63.3

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCC---CeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcE
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGI---PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGY   80 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~---~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~   80 (378)
                      .|+++++     |+.+++.|+++..   .+.+..+|...+|++ ++||+|+|..+++|+.++. ..+++++.|+|||||+
T Consensus        70 ~v~~vD~-----s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~  143 (234)
T 3dtn_A           70 TFTLVDM-----SEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGI  143 (234)
T ss_dssp             EEEEEES-----CHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             eEEEEEC-----CHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcE
Confidence            4555555     5689999998732   577889999999998 9999999999999986654 2599999999999999


Q ss_pred             EEEEcC
Q 017068           81 LVISGP   86 (378)
Q Consensus        81 lvis~p   86 (378)
                      ++++.+
T Consensus       144 l~~~~~  149 (234)
T 3dtn_A          144 FINADL  149 (234)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999875

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.59  E-value=4.1e-08  Score=92.31  Aligned_cols=71  Identities=14%  Similarity=0.058  Sum_probs=57.9

Q ss_pred             CCChHHHHHHHHHcC----------------------CCeEEEEcccCCCCCCC-CceeEEEecCccccccCCh-HHHHH
Q 017068           14 RDSHKAQIQFALERG----------------------IPAFVAMLGTRRLPFPA-FSFDIVHCSRCLIPFTAYN-ATYLI   69 (378)
Q Consensus        14 ~D~se~~vq~A~erg----------------------~~~~~~v~dae~LPfpd-~SFD~V~cs~~l~hw~~~~-~~~L~   69 (378)
                      .|+|+.||+.|+++.                      ..+.+.++|+..+|+++ ++||+|++..+++|++... ..+++
T Consensus        96 vD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~  175 (252)
T 2gb4_A           96 VEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYAD  175 (252)
T ss_dssp             ECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHH
T ss_pred             EECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHH
Confidence            345578999997653                      35788999999999875 8999999998898887543 47899


Q ss_pred             HHhhcccCCcEEEEE
Q 017068           70 EVDRLLRPGGYLVIS   84 (378)
Q Consensus        70 Ev~RVLkPGG~lvis   84 (378)
                      ++.|+|||||+|++.
T Consensus       176 ~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          176 IILSLLRKEFQYLVA  190 (252)
T ss_dssp             HHHHTEEEEEEEEEE
T ss_pred             HHHHHcCCCeEEEEE
Confidence            999999999999643

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.59  E-value=4.3e-08  Score=87.63  Aligned_cols=132  Identities=14%  Similarity=0.128  Sum_probs=92.4

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc---cccccccccccCCCCCCccccccccCcccccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG---LIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK  300 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG---lig~~~~w~~~f~typrtyDliH~~~~~~~~~  300 (378)
                      -..|||+|||.|.++..|.....   +|+-.|.+ ..+..+-++.   +--...|..+ ++ ++.+||+|.|..++..+.
T Consensus        46 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~l~~~~  120 (220)
T 3hnr_A           46 FGNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKEFSITEGDFLS-FE-VPTSIDTIVSTYAFHHLT  120 (220)
T ss_dssp             CSEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSCTTCCEESCCSSS-CC-CCSCCSEEEEESCGGGSC
T ss_pred             CCeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCCCceEEEeCChhh-cC-CCCCeEEEEECcchhcCC
Confidence            45899999999999999988765   66777766 7777776663   2222233332 22 338999999999888664


Q ss_pred             CCCCCCCCCCccceeeeecccccCCCeEEEeCCH----H---------------------------HHHHHHHHHhcCCc
Q 017068          301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----E---------------------------VIDKVSRIANTVRW  349 (378)
Q Consensus       301 ~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~----~---------------------------~~~~~~~~~~~l~W  349 (378)
                            + -....+|-|+-|+|+|||.+++.+..    .                           ..+.++++++.--+
T Consensus       121 ------~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  193 (220)
T 3hnr_A          121 ------D-DEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGF  193 (220)
T ss_dssp             ------H-HHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTE
T ss_pred             ------h-HHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCC
Confidence                  1 00123899999999999999998521    1                           23667788888888


Q ss_pred             eEEEecCCCCCCCCeEEEEEEec
Q 017068          350 TAAVHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       350 ~~~~~~~~~~~~~~e~~l~~~K~  372 (378)
                      ++......    +-.-++.++|+
T Consensus       194 ~v~~~~~~----~~~w~~~~~~~  212 (220)
T 3hnr_A          194 HVTFTRLN----HFVWVMEATKQ  212 (220)
T ss_dssp             EEEEEECS----SSEEEEEEEEC
T ss_pred             EEEEeecc----ceEEEEeehhh
Confidence            87765443    35677777775

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.59  E-value=5.6e-08  Score=86.80  Aligned_cols=73  Identities=22%  Similarity=0.212  Sum_probs=61.9

Q ss_pred             CCCChHHHHHHHHHcCC---CeEEEEcccCCCCCCCCceeEEEecCccccccCCh--HHHHHHHhhcccCCcEEEEEcC
Q 017068           13 PRDSHKAQIQFALERGI---PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN--ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        13 p~D~se~~vq~A~erg~---~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~--~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      ..|+|+.+++.|+++..   .+.+..+|+..++ ++++||+|+|..+++|+.++.  ..+++++.|+|||||+++++.+
T Consensus        78 ~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A           78 VIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             EEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            34556799999998742   4678899999998 789999999999999998764  3789999999999999999765

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.59  E-value=8.3e-09  Score=92.22  Aligned_cols=103  Identities=20%  Similarity=0.296  Sum_probs=74.9

Q ss_pred             hcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc----cc-ccccccccCCCCCCccccccc
Q 017068          219 KLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL----IG-VYHDWCEPFSTYPRTYDLIHV  292 (378)
Q Consensus       219 ~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl----ig-~~~~w~~~f~typrtyDliH~  292 (378)
                      .+....-.+|||+|||+|.++..|.....   +|+-.|.+ ..+..+-++.-    +- ...|..+ ++ .+.+||+|.|
T Consensus        46 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~  120 (216)
T 3ofk_A           46 SLSSGAVSNGLEIGCAAGAFTEKLAPHCK---RLTVIDVMPRAIGRACQRTKRWSHISWAATDILQ-FS-TAELFDLIVV  120 (216)
T ss_dssp             HTTTSSEEEEEEECCTTSHHHHHHGGGEE---EEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTT-CC-CSCCEEEEEE
T ss_pred             HcccCCCCcEEEEcCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcccCCCeEEEEcchhh-CC-CCCCccEEEE
Confidence            34556678999999999999999988753   77888876 77777766642    22 2223322 33 3589999999


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ..++.+..      +.-.+..+|-|+-|+|+|||++++..
T Consensus       121 ~~~l~~~~------~~~~~~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          121 AEVLYYLE------DMTQMRTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             ESCGGGSS------SHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccHHHhCC------CHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            99888764      22223467999999999999999964

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.59  E-value=2.1e-08  Score=90.41  Aligned_cols=116  Identities=15%  Similarity=0.124  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc--cccccccccccC
Q 017068          204 RWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG--LIGVYHDWCEPF  280 (378)
Q Consensus       204 ~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~w~~~f  280 (378)
                      .|......+.+.+...+.  .-..|||+|||+|.++..|....-   +|.-.|.+ .++..+-++.  +--...|..+ +
T Consensus        22 ~~~~~~~~~~~~l~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~-~   95 (239)
T 3bxo_A           22 DYAAEASDIADLVRSRTP--EASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMRD-F   95 (239)
T ss_dssp             CHHHHHHHHHHHHHHHCT--TCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTTT-C
T ss_pred             hHHHHHHHHHHHHHHhcC--CCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHHH-c
Confidence            355555555554544342  336899999999999999876543   56667765 7777776663  2112223332 3


Q ss_pred             CCCCCccccccccC-ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          281 STYPRTYDLIHVSG-IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       281 ~typrtyDliH~~~-~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      +. +.+||+|.|.. ++....      +.-....+|-++-|+|+|||.+++.+
T Consensus        96 ~~-~~~~D~v~~~~~~~~~~~------~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A           96 RL-GRKFSAVVSMFSSVGYLK------TTEELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             CC-SSCEEEEEECTTGGGGCC------SHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             cc-CCCCcEEEEcCchHhhcC------CHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            33 68999999654 665542      11234678999999999999999973

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.59  E-value=2.9e-09  Score=97.24  Aligned_cols=96  Identities=14%  Similarity=0.194  Sum_probs=70.2

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccccccccccccCCCCC-CccccccccCccccccCCC
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYP-RTYDLIHVSGIESLIKNPG  303 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f~typ-rtyDliH~~~~~~~~~~~~  303 (378)
                      .+|||+|||.|.++..|.+...   +|+-.|.+ .++..+-++ +--+..|-.+...++| .+||+|.|..++....   
T Consensus        43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~-~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~---  115 (240)
T 3dli_A           43 RRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK-FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLD---  115 (240)
T ss_dssp             SCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT-SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSC---
T ss_pred             CeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh-cceeeccHHHHhhhcCCCCeeEEEECCchhhCC---
Confidence            5899999999999999887655   55666766 788888777 2112222222111333 8999999999888663   


Q ss_pred             CCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          304 SNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       304 ~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                          .-.+..+|-|+-|+|+|||++++..
T Consensus       116 ----~~~~~~~l~~~~~~LkpgG~l~~~~  140 (240)
T 3dli_A          116 ----PERLFELLSLCYSKMKYSSYIVIES  140 (240)
T ss_dssp             ----GGGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred             ----cHHHHHHHHHHHHHcCCCcEEEEEe
Confidence                2234689999999999999999974

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.59  E-value=4.7e-09  Score=104.09  Aligned_cols=147  Identities=13%  Similarity=0.090  Sum_probs=108.2

Q ss_pred             cccccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccccccc
Q 017068          196 DVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYH  274 (378)
Q Consensus       196 ~~F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~  274 (378)
                      ..|...+..|.+....+.+.+...+....=..|||+|||.|.++..|.++..   +|+-.|.+ +++..+-++|+-....
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~  155 (416)
T 4e2x_A           79 PYHSSGSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTD  155 (416)
T ss_dssp             CCCGGGCHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECS
T ss_pred             cCcCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCccee
Confidence            3455677889999888888776555544456899999999999999988766   67777877 8899999997633221


Q ss_pred             cc----cccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH----------------
Q 017068          275 DW----CEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----------------  334 (378)
Q Consensus       275 ~w----~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~----------------  334 (378)
                      .+    .+.++.-+.+||+|.|..+|.++.         +...+|-|+-|+|+|||.+++....                
T Consensus       156 ~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~---------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~  226 (416)
T 4e2x_A          156 FFEKATADDVRRTEGPANVIYAANTLCHIP---------YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDE  226 (416)
T ss_dssp             CCSHHHHHHHHHHHCCEEEEEEESCGGGCT---------THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTT
T ss_pred             eechhhHhhcccCCCCEEEEEECChHHhcC---------CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhh
Confidence            11    111221238999999999998764         3578999999999999999997421                


Q ss_pred             ----HHHHHHHHHHhcCCceEEEe
Q 017068          335 ----EVIDKVSRIANTVRWTAAVH  354 (378)
Q Consensus       335 ----~~~~~~~~~~~~l~W~~~~~  354 (378)
                          -..+.+++++++--+++...
T Consensus       227 ~~~~~s~~~l~~ll~~aGf~~~~~  250 (416)
T 4e2x_A          227 HFFLFSATSVQGMAQRCGFELVDV  250 (416)
T ss_dssp             CCEECCHHHHHHHHHHTTEEEEEE
T ss_pred             hhhcCCHHHHHHHHHHcCCEEEEE
Confidence                12357788888888877543

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.58  E-value=2.6e-08  Score=88.07  Aligned_cols=94  Identities=18%  Similarity=0.203  Sum_probs=68.6

Q ss_pred             EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCCCCCCccccccccCccc
Q 017068          227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      +|||+|||+|.++..|...+-  .+|+-.|.+ ..+..+-++    |+   +- ...|..+ ++.-+.+||+|.|..++.
T Consensus        46 ~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~l~  122 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN-IPIEDNYADLIVSRGSVF  122 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHHSE--EEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB-CSSCTTCEEEEEEESCGG
T ss_pred             EEEEECCCCCHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH-CCCCcccccEEEECchHh
Confidence            899999999999999987622  366777765 777666665    33   22 2233332 332248999999998887


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .+.         +...+|-|+-|+|+|||.+++.+
T Consensus       123 ~~~---------~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          123 FWE---------DVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             GCS---------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hcc---------CHHHHHHHHHHhCCCCCEEEEEe
Confidence            653         24679999999999999999974

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.58  E-value=4.5e-08  Score=90.86  Aligned_cols=76  Identities=22%  Similarity=0.332  Sum_probs=64.3

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      .|+++++     |+.+++.|+++    ++ .+.+..+|+..+|+++++||+|+|..+++|+.+.. .+++++.|+|||||
T Consensus        63 ~v~~vD~-----s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~l~~~~~~L~pgG  136 (276)
T 3mgg_A           63 EITSIDI-----SPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPE-EALKSLKKVLKPGG  136 (276)
T ss_dssp             EEEEEES-----CHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCGGGCSCHH-HHHHHHHHHEEEEE
T ss_pred             EEEEEEC-----CHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechhhhcCCHH-HHHHHHHHHcCCCc
Confidence            4555555     46888888775    44 47788899999999999999999999999998877 99999999999999


Q ss_pred             EEEEEcC
Q 017068           80 YLVISGP   86 (378)
Q Consensus        80 ~lvis~p   86 (378)
                      ++++..+
T Consensus       137 ~l~~~~~  143 (276)
T 3mgg_A          137 TITVIEG  143 (276)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEc
Confidence            9999764

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.58  E-value=5.7e-08  Score=92.65  Aligned_cols=75  Identities=17%  Similarity=0.188  Sum_probs=62.9

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG   78 (378)
                      .|+++++     |+.+++.|+++    |+.  +.+..+|++.+||++++||+|+|..+++|+ +.. .+++++.|+||||
T Consensus       142 ~v~gvD~-----s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~-~~~-~~l~~~~~~Lkpg  214 (312)
T 3vc1_A          142 RVEGVTL-----SAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYV-DLH-DLFSEHSRFLKVG  214 (312)
T ss_dssp             EEEEEES-----CHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCGGGS-CHH-HHHHHHHHHEEEE
T ss_pred             EEEEEeC-----CHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCchhhC-CHH-HHHHHHHHHcCCC
Confidence            4555555     46888888775    443  788999999999999999999999999888 444 9999999999999


Q ss_pred             cEEEEEcC
Q 017068           79 GYLVISGP   86 (378)
Q Consensus        79 G~lvis~p   86 (378)
                      |++++..+
T Consensus       215 G~l~~~~~  222 (312)
T 3vc1_A          215 GRYVTITG  222 (312)
T ss_dssp             EEEEEEEE
T ss_pred             cEEEEEEc
Confidence            99999765

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.57  E-value=4.4e-09  Score=95.96  Aligned_cols=125  Identities=14%  Similarity=0.124  Sum_probs=85.2

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc----ccc-ccccccccCCCCCCcccccccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG----LIG-VYHDWCEPFSTYPRTYDLIHVS  293 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG----lig-~~~~w~~~f~typrtyDliH~~  293 (378)
                      +....-.+|||+|||.|.++..|.....  -+|...|.+ ..+..+-++.    -+- ...|..+ ++.-+.+||+|.|.
T Consensus        89 l~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~  165 (254)
T 1xtp_A           89 LPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMET-ATLPPNTYDLIVIQ  165 (254)
T ss_dssp             STTCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGG-CCCCSSCEEEEEEE
T ss_pred             hcccCCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHH-CCCCCCCeEEEEEc
Confidence            3333456899999999999998876531  245666655 7777776663    122 2334333 33334799999999


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH----------------HHHHHHHHHHhcCCceEEEe
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----------------EVIDKVSRIANTVRWTAAVH  354 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~----------------~~~~~~~~~~~~l~W~~~~~  354 (378)
                      .++..+.       .-....+|-|+.|+|||||++++.+..                ...+.+.++++.--++....
T Consensus       166 ~~l~~~~-------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  235 (254)
T 1xtp_A          166 WTAIYLT-------DADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE  235 (254)
T ss_dssp             SCGGGSC-------HHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred             chhhhCC-------HHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEe
Confidence            9988763       112468899999999999999998631                13467777777777876643

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.57  E-value=4.1e-08  Score=85.76  Aligned_cols=146  Identities=14%  Similarity=0.056  Sum_probs=83.5

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc--ccccccccccCCCC-CCcccccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL--IGVYHDWCEPFSTY-PRTYDLIH  291 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig~~~~w~~~f~ty-prtyDliH  291 (378)
                      +..|  ..|||+|||+|.++..|.....   .|+-.|.+ .++..+-++    |+  +-+.++-.+.++.+ +.+||+|.
T Consensus        20 ~~~~--~~vLDiGcG~G~~~~~la~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~   94 (185)
T 3mti_A           20 LDDE--SIVVDATMGNGNDTAFLAGLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAI   94 (185)
T ss_dssp             CCTT--CEEEESCCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEE
T ss_pred             CCCC--CEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEE
Confidence            4444  4799999999999999998854   66777765 677665444    44  33333333343323 47899997


Q ss_pred             ccC-ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC------HHHHHHHHHHHhcCC---ceEEEecCCCCCC
Q 017068          292 VSG-IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS------PEVIDKVSRIANTVR---WTAAVHDKEPGSN  361 (378)
Q Consensus       292 ~~~-~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~------~~~~~~~~~~~~~l~---W~~~~~~~~~~~~  361 (378)
                      ++- .+.. .+.......-.....|-|+-|+|+|||.+++..-      .+..+.+.+.++.+.   |.+.....-+...
T Consensus        95 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  173 (185)
T 3mti_A           95 FNLGYLPS-ADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQIN  173 (185)
T ss_dssp             EEEC------------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSS
T ss_pred             EeCCCCCC-cchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCC
Confidence            652 1111 0000000001113567899999999999988632      234456666666655   7765433222222


Q ss_pred             CCeEEEEEEe
Q 017068          362 GREKILVATK  371 (378)
Q Consensus       362 ~~e~~l~~~K  371 (378)
                      ....+++..|
T Consensus       174 ~~~~~~~i~~  183 (185)
T 3mti_A          174 TPPFLVMLEK  183 (185)
T ss_dssp             CCCEEEEEEE
T ss_pred             CCCeEEEEEe
Confidence            3445555555

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.56  E-value=2e-08  Score=94.02  Aligned_cols=72  Identities=22%  Similarity=0.304  Sum_probs=60.2

Q ss_pred             CCChHHHHHHHHHcC---------CCeEEEEcccCCCC---CCCCceeEEEec-CccccccC-------ChHHHHHHHhh
Q 017068           14 RDSHKAQIQFALERG---------IPAFVAMLGTRRLP---FPAFSFDIVHCS-RCLIPFTA-------YNATYLIEVDR   73 (378)
Q Consensus        14 ~D~se~~vq~A~erg---------~~~~~~v~dae~LP---fpd~SFD~V~cs-~~l~hw~~-------~~~~~L~Ev~R   73 (378)
                      .|+|+.|++.|+++.         ..+.+..++...+|   +++++||+|+|. .+++|+.+       .. .+++++.|
T Consensus        85 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~-~~l~~~~~  163 (293)
T 3thr_A           85 VDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHR-LALKNIAS  163 (293)
T ss_dssp             EESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHH-HHHHHHHH
T ss_pred             EECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHH-HHHHHHHH
Confidence            345578999887742         23567788888888   999999999998 89999988       44 89999999


Q ss_pred             cccCCcEEEEEcC
Q 017068           74 LLRPGGYLVISGP   86 (378)
Q Consensus        74 VLkPGG~lvis~p   86 (378)
                      +|||||+|+++.+
T Consensus       164 ~LkpgG~l~~~~~  176 (293)
T 3thr_A          164 MVRPGGLLVIDHR  176 (293)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             HcCCCeEEEEEeC
Confidence            9999999999876

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.56  E-value=4.5e-08  Score=89.34  Aligned_cols=77  Identities=17%  Similarity=0.130  Sum_probs=63.3

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCC-----CeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGI-----PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~-----~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPG   78 (378)
                      .|++++     +|+.+++.|+++..     .+.+..+|+..+++++++||+|+|..+++|++++. ..+++++.|+||||
T Consensus       104 ~v~~vD-----~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg  178 (241)
T 2ex4_A          104 EVDMVD-----ITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN  178 (241)
T ss_dssp             EEEEEE-----SCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             EEEEEe-----CCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCC
Confidence            455554     45789999988742     25678889999999999999999999999987643 48999999999999


Q ss_pred             cEEEEEcC
Q 017068           79 GYLVISGP   86 (378)
Q Consensus        79 G~lvis~p   86 (378)
                      |+++++.+
T Consensus       179 G~l~i~~~  186 (241)
T 2ex4_A          179 GIIVIKDN  186 (241)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEc
Confidence            99999765

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.55  E-value=3.1e-08  Score=85.24  Aligned_cols=129  Identities=12%  Similarity=0.062  Sum_probs=89.2

Q ss_pred             CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc--cccccccccccCCCCCCccccccccCcccccc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG--LIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK  300 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~w~~~f~typrtyDliH~~~~~~~~~  300 (378)
                      .-.+|||+|||.|.++..|....-   +|.-.|.+ ..++.+-++.  +--...|  .  +.-+.+||+|.|..++..+.
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~--~~~~~~~D~v~~~~~l~~~~   89 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVKEKFDSVITLSDP--K--EIPDNSVDFILFANSFHDMD   89 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTEE---EEEEECSCHHHHHHHHHHCTTSEEESSG--G--GSCTTCEEEEEEESCSTTCS
T ss_pred             CCCeEEEECCCCCHHHHHHHhhcC---eEEEEeCCHHHHHHHHHhCCCcEEEeCC--C--CCCCCceEEEEEccchhccc
Confidence            346899999999999999988763   77778866 7788777761  1112233  2  32247999999998887653


Q ss_pred             CCCCCCCCCCccceeeeecccccCCCeEEEeCCH-------------HHHHHHHHHHhcCCceEEEecCCCCCCCCeEEE
Q 017068          301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-------------EVIDKVSRIANTVRWTAAVHDKEPGSNGREKIL  367 (378)
Q Consensus       301 ~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-------------~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l  367 (378)
                               +...+|-|+-|+|+|||.+++.+..             -..++++++++  -|+......-   ....-.+
T Consensus        90 ---------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~---~~~~~~l  155 (170)
T 3i9f_A           90 ---------DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNP---TPYHFGL  155 (170)
T ss_dssp             ---------CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECS---STTEEEE
T ss_pred             ---------CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCC---CCceEEE
Confidence                     3468899999999999999997421             13456667666  6776543221   1345677


Q ss_pred             EEEecC
Q 017068          368 VATKSL  373 (378)
Q Consensus       368 ~~~K~~  373 (378)
                      ++.|+=
T Consensus       156 ~~~~~~  161 (170)
T 3i9f_A          156 VLKRKT  161 (170)
T ss_dssp             EEEECC
T ss_pred             EEecCC
Confidence            777653

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.55  E-value=7.4e-08  Score=85.74  Aligned_cols=69  Identities=17%  Similarity=0.198  Sum_probs=59.8

Q ss_pred             CChHHHHHHHHHcCCCeEEEEcccCC--CCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALERGIPAFVAMLGTRR--LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~erg~~~~~~v~dae~--LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.|+.+++.|+++..  .+..+|...  +|+++++||+|+|..+++|+.+.. .+++++.|+|||||+++++.+
T Consensus        61 D~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~l~~~~~~L~~gG~l~~~~~  131 (230)
T 3cc8_A           61 EAFPEAAEQAKEKLD--HVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPW-AVIEKVKPYIKQNGVILASIP  131 (230)
T ss_dssp             ESSHHHHHHHHTTSS--EEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCHH-HHHHHTGGGEEEEEEEEEEEE
T ss_pred             eCCHHHHHHHHHhCC--cEEEcchhhcCCCCCCCccCEEEECChhhhcCCHH-HHHHHHHHHcCCCCEEEEEeC
Confidence            455799999988754  566777765  789999999999999999998876 999999999999999999886

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.54  E-value=5.4e-08  Score=87.94  Aligned_cols=93  Identities=16%  Similarity=0.255  Sum_probs=66.5

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-----cc-ccccccccCCCCCCccccccccC-ccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-----IG-VYHDWCEPFSTYPRTYDLIHVSG-IES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-----ig-~~~~w~~~f~typrtyDliH~~~-~~~  297 (378)
                      .+|||+|||.|.++..|...    .+|+-.|.+ ..+..+-++.-     +- ...|..+ ++ .+.+||+|.|.. ++.
T Consensus        35 ~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~~~~  108 (243)
T 3d2l_A           35 KRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRE-LE-LPEPVDAITILCDSLN  108 (243)
T ss_dssp             CEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGG-CC-CSSCEEEEEECTTGGG
T ss_pred             CeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhh-cC-CCCCcCEEEEeCCchh
Confidence            68999999999999999887    367777766 77776665521     11 1223322 22 458999999875 666


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEE
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV  330 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii  330 (378)
                      .+.      ..-....+|-++-|+|+|||.+++
T Consensus       109 ~~~------~~~~~~~~l~~~~~~L~pgG~l~~  135 (243)
T 3d2l_A          109 YLQ------TEADVKQTFDSAARLLTDGGKLLF  135 (243)
T ss_dssp             GCC------SHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hcC------CHHHHHHHHHHHHHhcCCCeEEEE
Confidence            553      223346789999999999999998

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.54  E-value=2.9e-08  Score=90.85  Aligned_cols=123  Identities=10%  Similarity=0.024  Sum_probs=79.9

Q ss_pred             CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc---------------------------------
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL---------------------------------  269 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl---------------------------------  269 (378)
                      .-.+|||+|||+|.++..|.....  -+|+-.|.+ ..+..+-++--                                 
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            346899999999999988876654  356667765 66665543311                                 


Q ss_pred             --c-c-ccccccccCCCCC---CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH--------
Q 017068          270 --I-G-VYHDWCEPFSTYP---RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP--------  334 (378)
Q Consensus       270 --i-g-~~~~w~~~f~typ---rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~--------  334 (378)
                        + - ...|..+..+..+   .+||+|.|..++....     .+.-....+|-|+-|+|+|||++|+.+..        
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~-----~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~  208 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAAC-----PDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIG  208 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC-----SSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEET
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhc-----CChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcC
Confidence              2 1 1233333222123   7999999998887432     01113467899999999999999997521        


Q ss_pred             --------HHHHHHHHHHhcCCceEEE
Q 017068          335 --------EVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       335 --------~~~~~~~~~~~~l~W~~~~  353 (378)
                              -..+.+.++++..-+++..
T Consensus       209 ~~~~~~~~~~~~~~~~~l~~aGf~~~~  235 (265)
T 2i62_A          209 EQKFSSLPLGWETVRDAVEEAGYTIEQ  235 (265)
T ss_dssp             TEEEECCCCCHHHHHHHHHHTTCEEEE
T ss_pred             CccccccccCHHHHHHHHHHCCCEEEE
Confidence                    0244677777777777654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.54  E-value=1.2e-08  Score=92.27  Aligned_cols=115  Identities=11%  Similarity=0.103  Sum_probs=83.3

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc---cc-ccccccccCCCCCCccccccccCcccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL---IG-VYHDWCEPFSTYPRTYDLIHVSGIESLIK  300 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl---ig-~~~~w~~~f~typrtyDliH~~~~~~~~~  300 (378)
                      .+|||+|||.|.++..|.....   +|+-.|.+ ..+..+-+++.   +- +..|.. .++.-+.+||+|.|..++....
T Consensus        55 ~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~~~  130 (242)
T 3l8d_A           55 AEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDLS-SLPFENEQFEAIMAINSLEWTE  130 (242)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBTT-BCSSCTTCEEEEEEESCTTSSS
T ss_pred             CeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcchh-cCCCCCCCccEEEEcChHhhcc
Confidence            4899999999999999988865   56677765 78888887743   11 222222 2343348999999998887653


Q ss_pred             CCCCCCCCCCccceeeeecccccCCCeEEEeCCH----------------------HHHHHHHHHHhcCCceEEE
Q 017068          301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----------------------EVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       301 ~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~----------------------~~~~~~~~~~~~l~W~~~~  353 (378)
                               +...+|-|+-|+|+|||++++.+..                      -...+++++++..-+++..
T Consensus       131 ---------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  196 (242)
T 3l8d_A          131 ---------EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVD  196 (242)
T ss_dssp             ---------CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred             ---------CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEE
Confidence                     2357899999999999999997410                      1234677888888888754

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.53  E-value=1.1e-07  Score=85.18  Aligned_cols=72  Identities=25%  Similarity=0.323  Sum_probs=60.8

Q ss_pred             CChHHHHHHHHHcC----C------CeEEEEcccCCCCCCCCceeEEEecCccccccCCh--HHHHHHHhhcccCCcEEE
Q 017068           15 DSHKAQIQFALERG----I------PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN--ATYLIEVDRLLRPGGYLV   82 (378)
Q Consensus        15 D~se~~vq~A~erg----~------~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~--~~~L~Ev~RVLkPGG~lv   82 (378)
                      |+|+.+++.|+++.    +      .+.+..++...+|+++++||+|+|..+++|+.++.  ..+++++.|+|||||+++
T Consensus        59 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~  138 (235)
T 3sm3_A           59 DINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLY  138 (235)
T ss_dssp             ESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence            44578999998853    2      25678889999999999999999999999987654  279999999999999999


Q ss_pred             EEcC
Q 017068           83 ISGP   86 (378)
Q Consensus        83 is~p   86 (378)
                      ++.+
T Consensus       139 ~~~~  142 (235)
T 3sm3_A          139 LVEF  142 (235)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9866

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.53  E-value=4.2e-08  Score=87.49  Aligned_cols=71  Identities=24%  Similarity=0.201  Sum_probs=58.6

Q ss_pred             CChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCC-hHHHHHHHhhcccCCcEEEEEcCC
Q 017068           15 DSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVISGPP   87 (378)
Q Consensus        15 D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~-~~~~L~Ev~RVLkPGG~lvis~pp   87 (378)
                      |+|+.+++.|+++. .+.+..++...+| ++++||+|+|..+++|+... ...+++++.|+|||||+++++.++
T Consensus        72 D~s~~~~~~a~~~~-~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  143 (211)
T 3e23_A           72 DGSPELAAEASRRL-GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKS  143 (211)
T ss_dssp             ESCHHHHHHHHHHH-TSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCHHHHHHHHHhc-CCceEEeeeccCC-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            45578999999882 3445677888899 89999999999999998732 248999999999999999998663

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.53  E-value=9.3e-08  Score=89.97  Aligned_cols=76  Identities=16%  Similarity=0.178  Sum_probs=63.6

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY   80 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~   80 (378)
                      .|++++++     +.+++.|+++    +..+.+.++|+..+|++ ++||+|+|..+++|+.+.. .+++++.|+|||||+
T Consensus        49 ~v~gvD~s-----~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~-~~l~~~~~~LkpgG~  121 (284)
T 3gu3_A           49 KYTGIDSG-----ETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFLLHMTTPE-TMLQKMIHSVKKGGK  121 (284)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCGGGCSSHH-HHHHHHHHTEEEEEE
T ss_pred             EEEEEECC-----HHHHHHHHHHHHhcCCceEEEEcchhhcCcC-CCeeEEEECChhhcCCCHH-HHHHHHHHHcCCCCE
Confidence            46666555     6888888775    33577889999999995 6999999999999988777 999999999999999


Q ss_pred             EEEEcCC
Q 017068           81 LVISGPP   87 (378)
Q Consensus        81 lvis~pp   87 (378)
                      +++..+.
T Consensus       122 l~~~~~~  128 (284)
T 3gu3_A          122 IICFEPH  128 (284)
T ss_dssp             EEEEECC
T ss_pred             EEEEecc
Confidence            9998774

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.53  E-value=6.2e-08  Score=92.09  Aligned_cols=146  Identities=15%  Similarity=0.157  Sum_probs=94.9

Q ss_pred             HHHHhhhhcCCCCeeEEEecCCcceeeeeecc--CC-CeeEEEeccCCCC-cchHHHHhhc----c---cc-cccccccc
Q 017068          212 YKNTLNVKLGTPAIRNIMDMNAFFGGFAAALT--SD-PVWVMNVVPARKS-STLSVIYDRG----L---IG-VYHDWCEP  279 (378)
Q Consensus       212 Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~--~~-~vwvmnv~p~~~~-~~l~~i~eRG----l---ig-~~~~w~~~  279 (378)
                      |.+.+...+..+  ..|||+|||.|.++..|.  .. ..   +|+-.|.+ ..+..+-++.    +   +- +..|..+ 
T Consensus       108 ~~~~l~~~l~~~--~~vLDiGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-  181 (305)
T 3ocj_A          108 FRRALQRHLRPG--CVVASVPCGWMSELLALDYSACPGV---QLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK-  181 (305)
T ss_dssp             HHHHHHHHCCTT--CEEEETTCTTCHHHHTSCCTTCTTC---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG-
T ss_pred             HHHHHHhhCCCC--CEEEEecCCCCHHHHHHHHhcCCCC---eEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc-
Confidence            334343334444  479999999999999884  22 33   55666765 6676665543    2   11 2233333 


Q ss_pred             CCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH-------------------------
Q 017068          280 FSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-------------------------  334 (378)
Q Consensus       280 f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-------------------------  334 (378)
                      ++ ++.+||+|.|..++..+.      +.-....++-|+-|+|||||++++.+-.                         
T Consensus       182 ~~-~~~~fD~v~~~~~~~~~~------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  254 (305)
T 3ocj_A          182 LD-TREGYDLLTSNGLNIYEP------DDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQ  254 (305)
T ss_dssp             CC-CCSCEEEEECCSSGGGCC------CHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHH
T ss_pred             CC-ccCCeEEEEECChhhhcC------CHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhh
Confidence            22 459999999998887664      2111224799999999999999998610                         


Q ss_pred             --------------HHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEEEEec
Q 017068          335 --------------EVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       335 --------------~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~  372 (378)
                                    ...+++.++++.--++.......  ....-..++++|+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~--~~~~~~~v~a~Kp  304 (305)
T 3ocj_A          255 LVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDD--RARLFPTVIARKP  304 (305)
T ss_dssp             HHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEECC--TTSSSCEEEEECC
T ss_pred             hHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEcc--cCceeeEEEEecC
Confidence                          13667888888888987654432  1244567888885

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.52  E-value=1.5e-08  Score=95.31  Aligned_cols=96  Identities=22%  Similarity=0.285  Sum_probs=69.7

Q ss_pred             CeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCCCCCCcccccccc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFSTYPRTYDLIHVS  293 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~typrtyDliH~~  293 (378)
                      .-..|||+|||.|.++..|... +.   +|+-.|.+ .++..+-++    |+   +- ...|..+ +|.-+.+||+|++.
T Consensus        82 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~  157 (297)
T 2o57_A           82 RQAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE-IPCEDNSYDFIWSQ  157 (297)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS-CSSCTTCEEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc-CCCCCCCEeEEEec
Confidence            3458999999999999998765 54   56666765 677666554    33   21 2233332 33224799999999


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .++..+.      +   ...+|-|+-|+|||||.+++.+
T Consensus       158 ~~l~~~~------~---~~~~l~~~~~~LkpgG~l~~~~  187 (297)
T 2o57_A          158 DAFLHSP------D---KLKVFQECARVLKPRGVMAITD  187 (297)
T ss_dssp             SCGGGCS------C---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhhhcC------C---HHHHHHHHHHHcCCCeEEEEEE
Confidence            9988764      2   4689999999999999999985

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.52  E-value=8.1e-08  Score=86.09  Aligned_cols=75  Identities=9%  Similarity=0.027  Sum_probs=61.3

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC----C------CeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhh
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG----I------PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDR   73 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg----~------~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~R   73 (378)
                      .|++++++     +.+++.|+++.    +      .+.+..+|...+++++++||+|+|..+++|+.++. ..+++++.|
T Consensus        55 ~v~gvD~s-----~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~  129 (219)
T 3jwg_A           55 QITGVDVS-----YSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFE  129 (219)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHT
T ss_pred             EEEEEECC-----HHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHH
Confidence            46666555     68899888862    1      56788899999999999999999999999997653 489999999


Q ss_pred             cccCCcEEEEE
Q 017068           74 LLRPGGYLVIS   84 (378)
Q Consensus        74 VLkPGG~lvis   84 (378)
                      +|||||.++.+
T Consensus       130 ~LkpgG~~i~~  140 (219)
T 3jwg_A          130 FTRPQTVIVST  140 (219)
T ss_dssp             TTCCSEEEEEE
T ss_pred             hhCCCEEEEEc
Confidence            99999976654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.52  E-value=1.9e-08  Score=92.07  Aligned_cols=93  Identities=14%  Similarity=0.220  Sum_probs=66.5

Q ss_pred             eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCCCCCCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~typrtyDliH~~~~  295 (378)
                      .+|||+|||.|.++..|... +.   +|+-.|.+ .++..+-++    |+   +- ...|..+ ++. +.+||+|+|..+
T Consensus        38 ~~VLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~fD~V~~~~~  112 (256)
T 1nkv_A           38 TRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-YVA-NEKCDVAACVGA  112 (256)
T ss_dssp             CEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-CCC-SSCEEEEEEESC
T ss_pred             CEEEEECCCCCHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh-CCc-CCCCCEEEECCC
Confidence            58999999999999888754 33   45666655 666665443    43   21 2334433 333 789999999887


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      +..+.         +...+|-|+-|+|||||.+++.+
T Consensus       113 ~~~~~---------~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          113 TWIAG---------GFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             GGGTS---------SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             hHhcC---------CHHHHHHHHHHHcCCCeEEEEec
Confidence            76543         24788999999999999999975

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.52  E-value=4.1e-08  Score=89.78  Aligned_cols=94  Identities=15%  Similarity=0.154  Sum_probs=69.5

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc------cccccccccccCCCCCCccccccccCccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG------LIGVYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG------lig~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      -.+|||+|||+|.++..|.....   +|+-.|.+ .++..+-++-      +--...|. +.++.-+.+||+|+|..++.
T Consensus        40 ~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~  115 (263)
T 2yqz_A           40 EPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKIAGVDRKVQVVQADA-RAIPLPDESVHGVIVVHLWH  115 (263)
T ss_dssp             CCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT-TSCCSCTTCEEEEEEESCGG
T ss_pred             CCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhccCCceEEEEccc-ccCCCCCCCeeEEEECCchh
Confidence            46899999999999999988764   66777766 7777776662      11123333 23442247999999998887


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      ...         +...+|-|+-|+|+|||++++.
T Consensus       116 ~~~---------~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          116 LVP---------DWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             GCT---------THHHHHHHHHHHEEEEEEEEEE
T ss_pred             hcC---------CHHHHHHHHHHHCCCCcEEEEE
Confidence            653         2467999999999999999886

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.51  E-value=5.3e-08  Score=93.85  Aligned_cols=77  Identities=16%  Similarity=0.044  Sum_probs=56.6

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC-------eEEEEccc------CCC--CCCCCceeEEEecCccccccC--C
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP-------AFVAMLGT------RRL--PFPAFSFDIVHCSRCLIPFTA--Y   63 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~-------~~~~v~da------e~L--Pfpd~SFD~V~cs~~l~hw~~--~   63 (378)
                      .|+++|++     +.||+.|+++    +..       +.+.+.+.      +.|  ++++++||+|+|.+++++..+  +
T Consensus        73 ~v~GiD~S-----~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~  147 (302)
T 2vdw_A           73 LLVATDPD-----ADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRH  147 (302)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTT
T ss_pred             eEEEEECC-----HHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHHH
Confidence            35555555     6888888876    221       34556655      434  578899999999998866422  2


Q ss_pred             hHHHHHHHhhcccCCcEEEEEcC
Q 017068           64 NATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        64 ~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      ...+++++.|+|||||+|+++.+
T Consensus       148 ~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          148 YATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCCEEEEEeC
Confidence            25899999999999999999886

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.51  E-value=2.1e-08  Score=95.40  Aligned_cols=94  Identities=13%  Similarity=0.129  Sum_probs=68.7

Q ss_pred             eeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh----ccc---c-ccccccccCCCCCCccccccccC
Q 017068          225 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GLI---G-VYHDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gli---g-~~~~w~~~f~typrtyDliH~~~  294 (378)
                      -.+|||+|||.|.++..|... +.   +|+-.|.+ .++..+-++    |+-   - ...|..    ..|.+||+|.+..
T Consensus        91 ~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~----~~~~~fD~v~~~~  163 (318)
T 2fk8_A           91 GMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE----DFAEPVDRIVSIE  163 (318)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG----GCCCCCSEEEEES
T ss_pred             cCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChH----HCCCCcCEEEEeC
Confidence            357999999999999988765 54   56666765 777776665    442   1 122332    2358999999998


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      +|....       .-+...+|-|+-|+|+|||.+++.+
T Consensus       164 ~l~~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~  194 (318)
T 2fk8_A          164 AFEHFG-------HENYDDFFKRCFNIMPADGRMTVQS  194 (318)
T ss_dssp             CGGGTC-------GGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hHHhcC-------HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            887652       1234679999999999999999975

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.51  E-value=2.3e-07  Score=84.15  Aligned_cols=73  Identities=15%  Similarity=0.066  Sum_probs=59.4

Q ss_pred             CCCChHHHHHHHHHcCCC------eEEEEcccCCCCCCCCceeEEEecCccccccCC-hHHHHHHHhhcccCCcEEEEEc
Q 017068           13 PRDSHKAQIQFALERGIP------AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        13 p~D~se~~vq~A~erg~~------~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~-~~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      ..|+|+.+++.|+++...      +.+..+|...++ ++++||+|+|..+++|++.. ...+++++.|+|||||++++..
T Consensus        93 gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  171 (235)
T 3lcc_A           93 GLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLM  171 (235)
T ss_dssp             EECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEE
Confidence            345667999999887432      678889998877 56799999999999998732 2489999999999999999865


Q ss_pred             C
Q 017068           86 P   86 (378)
Q Consensus        86 p   86 (378)
                      .
T Consensus       172 ~  172 (235)
T 3lcc_A          172 Y  172 (235)
T ss_dssp             C
T ss_pred             e
Confidence            5

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.51  E-value=1.3e-08  Score=94.45  Aligned_cols=115  Identities=14%  Similarity=0.244  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhh----cc--cc-ccc
Q 017068          205 WRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GL--IG-VYH  274 (378)
Q Consensus       205 w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig-~~~  274 (378)
                      +......+.+.+.....-..=..|||+|||.|.++..|...  ..   +|+-.|.+ .++..+-++    |+  +- ...
T Consensus        18 ~~~~~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~   94 (276)
T 3mgg_A           18 LSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDA---EITSIDISPESLEKARENTEKNGIKNVKFLQA   94 (276)
T ss_dssp             -----CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             HHHHHHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEc
Confidence            33333334444433222233468999999999999988765  34   45556655 666665554    43  11 122


Q ss_pred             cccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          275 DWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       275 ~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      |.. .++.-+.+||+|+|..++..+.         +...+|-++-|+|||||++++.+
T Consensus        95 d~~-~~~~~~~~fD~v~~~~~l~~~~---------~~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A           95 NIF-SLPFEDSSFDHIFVCFVLEHLQ---------SPEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             CGG-GCCSCTTCEEEEEEESCGGGCS---------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccc-cCCCCCCCeeEEEEechhhhcC---------CHHHHHHHHHHHcCCCcEEEEEE
Confidence            332 2343348999999999888664         23578999999999999999964

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.51  E-value=1.1e-07  Score=81.84  Aligned_cols=113  Identities=16%  Similarity=0.125  Sum_probs=79.2

Q ss_pred             CeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhh----ccc---cccccccccCCCCCCcccccccc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GLI---GVYHDWCEPFSTYPRTYDLIHVS  293 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eR----Gli---g~~~~w~~~f~typrtyDliH~~  293 (378)
                      .-..|||+|||+|.++..|...  ..   .|+-.|.+ ..+..+-++    |+-   -+..|..+.++..+.+||+|.+.
T Consensus        25 ~~~~vldiG~G~G~~~~~l~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~  101 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWLRSTPQT---TAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIG  101 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHHTTSSSE---EEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEEC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHCCCC---eEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEEC
Confidence            3468999999999999988776  33   55666765 667666554    432   22344555666544799999987


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-HHHHHHHHHHHhcCCceEE
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWTAA  352 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-~~~~~~~~~~~~~l~W~~~  352 (378)
                      ..+..             ..++-++-|+|+|||.+++... .+....+.++.+....++.
T Consensus       102 ~~~~~-------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~  148 (178)
T 3hm2_A          102 GGLTA-------------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTIS  148 (178)
T ss_dssp             C-TTC-------------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEE
T ss_pred             CcccH-------------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeE
Confidence            66542             4688999999999999999864 4556666666666666554

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.50  E-value=4.1e-07  Score=78.63  Aligned_cols=94  Identities=18%  Similarity=0.092  Sum_probs=68.8

Q ss_pred             CChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEec-CccccccCC-hHHHHHHHhhcccCCcEEEEEcCCCCCCc
Q 017068           15 DSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCS-RCLIPFTAY-NATYLIEVDRLLRPGGYLVISGPPVQWPK   92 (378)
Q Consensus        15 D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs-~~l~hw~~~-~~~~L~Ev~RVLkPGG~lvis~pp~~~~~   92 (378)
                      |.++.+++.|+++...+.+..+|...+|+++++||+|+|. .+++|...+ ...+++++.|+|||||+++++.+..... 
T Consensus        75 D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~-  153 (195)
T 3cgg_A           75 DLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGW-  153 (195)
T ss_dssp             ESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSC-
T ss_pred             cCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCc-
Confidence            4557999999998766788889999999999999999998 666666433 2489999999999999999986532111 


Q ss_pred             cchHHHHHHHHHHHhceeee
Q 017068           93 QDKEWADLQAVARALCYELI  112 (378)
Q Consensus        93 ~~~~w~~l~~l~~~lcw~~~  112 (378)
                         ....+..+.+...++..
T Consensus       154 ---~~~~~~~~l~~~Gf~~~  170 (195)
T 3cgg_A          154 ---VFGDFLEVAERVGLELE  170 (195)
T ss_dssp             ---CHHHHHHHHHHHTEEEE
T ss_pred             ---CHHHHHHHHHHcCCEEe
Confidence               12344455555455443

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.50  E-value=1.8e-07  Score=83.10  Aligned_cols=135  Identities=14%  Similarity=0.202  Sum_probs=87.0

Q ss_pred             cccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cccc-
Q 017068          198 FEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG-  271 (378)
Q Consensus       198 F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig-  271 (378)
                      |..+.....+.+.....   ..+..+  ..|||+|||+|.++..|...+.  .+|+-.|.+ .++..+-++    |+-. 
T Consensus        39 f~~~~~~~~~~~~~~l~---~~~~~~--~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v  111 (205)
T 3grz_A           39 FGTGNHQTTQLAMLGIE---RAMVKP--LTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDI  111 (205)
T ss_dssp             ---CCHHHHHHHHHHHH---HHCSSC--CEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCC
T ss_pred             cCCCCCccHHHHHHHHH---HhccCC--CEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCce
Confidence            55444433444433333   223333  5899999999999999887643  255666765 666666554    4321 


Q ss_pred             --ccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC-CHHHHHHHHHHHhcCC
Q 017068          272 --VYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVR  348 (378)
Q Consensus       272 --~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-~~~~~~~~~~~~~~l~  348 (378)
                        ...|..   ...+.+||+|.++..+..+            ..++-++-|+|+|||++++.+ .....+.+.++++...
T Consensus       112 ~~~~~d~~---~~~~~~fD~i~~~~~~~~~------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~G  176 (205)
T 3grz_A          112 ALQKTSLL---ADVDGKFDLIVANILAEIL------------LDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENS  176 (205)
T ss_dssp             EEEESSTT---TTCCSCEEEEEEESCHHHH------------HHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTT
T ss_pred             EEEecccc---ccCCCCceEEEECCcHHHH------------HHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcC
Confidence              222332   2335899999998666533            578999999999999999975 3445667777777777


Q ss_pred             ceEEEe
Q 017068          349 WTAAVH  354 (378)
Q Consensus       349 W~~~~~  354 (378)
                      ++....
T Consensus       177 f~~~~~  182 (205)
T 3grz_A          177 FQIDLK  182 (205)
T ss_dssp             EEEEEE
T ss_pred             CceEEe
Confidence            877654

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.50  E-value=3.1e-08  Score=91.98  Aligned_cols=95  Identities=20%  Similarity=0.156  Sum_probs=67.9

Q ss_pred             CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcccc-ccccccccCCCCCCccccccccCccccccC
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIG-VYHDWCEPFSTYPRTYDLIHVSGIESLIKN  301 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig-~~~~w~~~f~typrtyDliH~~~~~~~~~~  301 (378)
                      .-..|||+|||+|.++..|.+...   +|+-.|.+ .++..+-++.-+- ...|. +.++..+.+||+|||..++..+. 
T Consensus        34 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~-  108 (261)
T 3ege_A           34 KGSVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVVHPQVEWFTGYA-ENLALPDKSVDGVISILAIHHFS-  108 (261)
T ss_dssp             TTCEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCCCTTEEEECCCT-TSCCSCTTCBSEEEEESCGGGCS-
T ss_pred             CCCEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHhccCCEEEECch-hhCCCCCCCEeEEEEcchHhhcc-
Confidence            346899999999999999998665   56666655 5665544443222 22333 33443348999999999887654 


Q ss_pred             CCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          302 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       302 ~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                              +...+|-|+-|+|| ||++++.+
T Consensus       109 --------~~~~~l~~~~~~Lk-gG~~~~~~  130 (261)
T 3ege_A          109 --------HLEKSFQEMQRIIR-DGTIVLLT  130 (261)
T ss_dssp             --------SHHHHHHHHHHHBC-SSCEEEEE
T ss_pred             --------CHHHHHHHHHHHhC-CcEEEEEE
Confidence                    34689999999999 99887764

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.50  E-value=1.2e-07  Score=87.57  Aligned_cols=70  Identities=16%  Similarity=0.174  Sum_probs=60.4

Q ss_pred             CChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecC-ccccccC--ChHHHHHHHhhcccCCcEEEEEc
Q 017068           15 DSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSR-CLIPFTA--YNATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        15 D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~-~l~hw~~--~~~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      |+|+.+++.|+++...+.+..+|+..+|+ +++||+|+|.. +++|+.+  ....+++++.|+|||||+|+++.
T Consensus        79 D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A           79 ELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             ESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             ECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            45579999999987678899999999999 79999999998 8888864  22488999999999999999974

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.50  E-value=2.3e-08  Score=92.21  Aligned_cols=97  Identities=16%  Similarity=0.149  Sum_probs=70.1

Q ss_pred             CCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----ccc--c-ccccccccCCCCCCccccccccC
Q 017068          223 PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLI--G-VYHDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gli--g-~~~~w~~~f~typrtyDliH~~~  294 (378)
                      ..-.+|||+|||.|.++..|....-   .|+-.|.+ .+++.+-++    |+-  - ...|..+ +|.-+.+||+|+|..
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-l~~~~~~fD~V~~~~  111 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ-MPFTDERFHIVTCRI  111 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C-CCSCTTCEEEEEEES
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh-CCCCCCCEEEEEEhh
Confidence            3456899999999999999887643   67777766 777766554    431  1 2233322 332238999999998


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ++..+.         +...+|-|+-|+|||||++++.+
T Consensus       112 ~l~~~~---------d~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          112 AAHHFP---------NPASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             CGGGCS---------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhHhcC---------CHHHHHHHHHHHcCCCCEEEEEE
Confidence            887664         23679999999999999999964

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.49  E-value=1.4e-08  Score=95.00  Aligned_cols=103  Identities=14%  Similarity=0.174  Sum_probs=71.7

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc----ccc-------ccccccccCC---CCCCcccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG----LIG-------VYHDWCEPFS---TYPRTYDL  289 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG----lig-------~~~~w~~~f~---typrtyDl  289 (378)
                      -.+|||+|||+|.++..|.+...   +|+-.|.+ .++..+-++.    .-+       ...++.+ ++   ..+.+||+
T Consensus        58 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~fD~  133 (293)
T 3thr_A           58 CHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT-LDKDVPAGDGFDA  133 (293)
T ss_dssp             CCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG-HHHHSCCTTCEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh-CccccccCCCeEE
Confidence            35899999999999999988876   77888876 7887776542    111       1122222 11   23479999


Q ss_pred             cccc-CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          290 IHVS-GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       290 iH~~-~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      |+|. .+|.++.+  ...+.-....+|-|+-|+|+|||++++...
T Consensus       134 V~~~g~~l~~~~~--~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          134 VICLGNSFAHLPD--SKGDQSEHRLALKNIASMVRPGGLLVIDHR  176 (293)
T ss_dssp             EEECTTCGGGSCC--SSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEcChHHhhcCc--cccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            9997 67776641  000122356799999999999999999854

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.49  E-value=1e-07  Score=85.41  Aligned_cols=76  Identities=9%  Similarity=0.033  Sum_probs=61.8

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC----C------CeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhh
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG----I------PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDR   73 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg----~------~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~R   73 (378)
                      .|++++++     +.+++.|+++-    +      .+.+..+|+..+++++++||+|+|..+++|+.++. ..+++++.|
T Consensus        55 ~v~gvD~s-----~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~  129 (217)
T 3jwh_A           55 QITGVDVS-----YRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFE  129 (217)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHT
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHH
Confidence            56666655     68888888862    2      47788889888889899999999999999997652 489999999


Q ss_pred             cccCCcEEEEEc
Q 017068           74 LLRPGGYLVISG   85 (378)
Q Consensus        74 VLkPGG~lvis~   85 (378)
                      +|||||.++++.
T Consensus       130 ~LkpgG~li~~~  141 (217)
T 3jwh_A          130 FAQPKIVIVTTP  141 (217)
T ss_dssp             TTCCSEEEEEEE
T ss_pred             HcCCCEEEEEcc
Confidence            999999777653

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.48  E-value=4.5e-08  Score=87.45  Aligned_cols=131  Identities=12%  Similarity=0.052  Sum_probs=89.1

Q ss_pred             eEEEecCCcceeeeeeccCCC---eeEEEeccCCCC-cchHHHHhh----cc--cc-ccccccccCCCCCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSDP---VWVMNVVPARKS-STLSVIYDR----GL--IG-VYHDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~---vwvmnv~p~~~~-~~l~~i~eR----Gl--ig-~~~~w~~~f~typrtyDliH~~~  294 (378)
                      ..|||+|||+|.++..|....   .   .|+-.|.+ .++..+-++    |+  +- ...|.. .++.-+.+||+|.+..
T Consensus        39 ~~vLDiG~G~G~~~~~l~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~  114 (219)
T 3dh0_A           39 MTVLDVGTGAGFYLPYLSKMVGEKG---KVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEEN-KIPLPDNTVDFIFMAF  114 (219)
T ss_dssp             CEEEESSCTTCTTHHHHHHHHTTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTT-BCSSCSSCEEEEEEES
T ss_pred             CEEEEEecCCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccc-cCCCCCCCeeEEEeeh
Confidence            589999999999999887542   3   45556655 666655554    32  11 223332 2332237899999999


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-------------HHHHHHHHHHHhcCCceEEEecCCCCCC
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-------------PEVIDKVSRIANTVRWTAAVHDKEPGSN  361 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-------------~~~~~~~~~~~~~l~W~~~~~~~~~~~~  361 (378)
                      ++..+.         +...+|-|+-|+|+|||.+++.+.             .-..+++.++++.--++......-   .
T Consensus       115 ~l~~~~---------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~---~  182 (219)
T 3dh0_A          115 TFHELS---------EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEV---G  182 (219)
T ss_dssp             CGGGCS---------SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEE---T
T ss_pred             hhhhcC---------CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEee---C
Confidence            888664         236799999999999999999741             113577888888888986643221   1


Q ss_pred             CCeEEEEEEec
Q 017068          362 GREKILVATKS  372 (378)
Q Consensus       362 ~~e~~l~~~K~  372 (378)
                      ....+++++|+
T Consensus       183 ~~~~~~~~~k~  193 (219)
T 3dh0_A          183 KYCFGVYAMIV  193 (219)
T ss_dssp             TTEEEEEEECC
T ss_pred             CceEEEEEEec
Confidence            35677788775

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.48  E-value=2.1e-08  Score=89.49  Aligned_cols=116  Identities=15%  Similarity=0.120  Sum_probs=84.6

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh-ccccccccccccCCCCCCccccccccCccccccCCC
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR-GLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPG  303 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR-Glig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~  303 (378)
                      ..|||+|||.|.++..|.+...   +|+..|.+ ..+..+-++ ++--...+.. .++ .+.+||+|.|..++..+.   
T Consensus        45 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~~~~---  116 (211)
T 3e23_A           45 AKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRLGRPVRTMLFH-QLD-AIDAYDAVWAHACLLHVP---  116 (211)
T ss_dssp             CEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTSCCEECCGG-GCC-CCSCEEEEEECSCGGGSC---
T ss_pred             CcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhcCCceEEeeec-cCC-CCCcEEEEEecCchhhcC---
Confidence            4899999999999999988765   66777766 778777777 4432333333 234 458999999998887652   


Q ss_pred             CCCCCCCccceeeeecccccCCCeEEEeCCH---------------HHHHHHHHHHhcCC-ceEEE
Q 017068          304 SNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP---------------EVIDKVSRIANTVR-WTAAV  353 (378)
Q Consensus       304 ~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~---------------~~~~~~~~~~~~l~-W~~~~  353 (378)
                          .-+...+|-|+-|+|+|||++++....               -..+.+.++++.-- ++...
T Consensus       117 ----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~  178 (211)
T 3e23_A          117 ----RDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVA  178 (211)
T ss_dssp             ----HHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEE
T ss_pred             ----HHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEE
Confidence                123467999999999999999997321               14667777777777 77654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.48  E-value=8.7e-08  Score=82.93  Aligned_cols=136  Identities=15%  Similarity=0.092  Sum_probs=87.4

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-cc-ccccccccCCCCCCcccccccc-CccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-IG-VYHDWCEPFSTYPRTYDLIHVS-GIESLIKN  301 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig-~~~~w~~~f~typrtyDliH~~-~~~~~~~~  301 (378)
                      .+|||+|||.|.++..|.....   +++-.|.+ ..+..+-++.- +- ...|..+ ++.-+.+||+|.+. .++.... 
T Consensus        48 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~~~~D~i~~~~~~~~~~~-  122 (195)
T 3cgg_A           48 AKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLSV-DQISETDFDLIVSAGNVMGFLA-  122 (195)
T ss_dssp             CEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTTT-SCCCCCCEEEEEECCCCGGGSC-
T ss_pred             CeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEccccc-CCCCCCceeEEEECCcHHhhcC-
Confidence            4899999999999999987765   56666765 66666655531 22 2223332 22224799999998 5555432 


Q ss_pred             CCCCCCCCCccceeeeecccccCCCeEEEeCCH---HHHHHHHHHHhcCCceEEEecCC--C---CCCCCeEEEEEEec
Q 017068          302 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP---EVIDKVSRIANTVRWTAAVHDKE--P---GSNGREKILVATKS  372 (378)
Q Consensus       302 ~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~---~~~~~~~~~~~~l~W~~~~~~~~--~---~~~~~e~~l~~~K~  372 (378)
                            .-....+|-++-|+|+|||.+++....   ...+++.++++...+++......  .   .....--+++++|+
T Consensus       123 ------~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~  195 (195)
T 3cgg_A          123 ------EDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK  195 (195)
T ss_dssp             ------HHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred             ------hHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence                  112357899999999999999996432   24667777777777777643211  1   11234556777764

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.48  E-value=2.5e-08  Score=94.31  Aligned_cols=118  Identities=13%  Similarity=0.183  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHhhhhcC-CCCeeEEEecCCcceeeeeec----cC--CCeeEEEeccCCCC-cchHHHHhh-----ccc
Q 017068          204 RWRRRVAYYKNTLNVKLG-TPAIRNIMDMNAFFGGFAAAL----TS--DPVWVMNVVPARKS-STLSVIYDR-----GLI  270 (378)
Q Consensus       204 ~w~~~v~~Y~~~~~~~~~-~~~iR~vlDm~ag~g~faa~L----~~--~~vwvmnv~p~~~~-~~l~~i~eR-----Gli  270 (378)
                      .|.+.+.++...+...+. ...=..|||+|||+|.++..+    ..  ..+ ...++-.|.+ .+|+.+-+|     |+-
T Consensus        31 ~~~~~~~~~l~~~l~~~~~~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~-~v~~~~vD~S~~ml~~a~~~~~~~~~~~  109 (292)
T 2aot_A           31 CMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGV-CINNEVVEPSAEQIAKYKELVAKTSNLE  109 (292)
T ss_dssp             HHHHHHHHTHHHHSSSTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTC-EEEEEEECSCHHHHHHHHHHHHTCSSCT
T ss_pred             HHHHHHHHhchhHHhhccCCCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCc-eeeEEEEeCCHHHHHHHHHHHHhccCCC
Confidence            444444444433322222 123347999999999865432    22  233 2244677766 888877665     332


Q ss_pred             ccccccc----ccCC-----CC-CCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          271 GVYHDWC----EPFS-----TY-PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       271 g~~~~w~----~~f~-----ty-prtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      .+--.|.    +.++     ++ +.+||+|+|..++..+.         +....|-||-|+|+|||.+++.
T Consensus       110 ~v~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~---------d~~~~l~~~~r~LkpgG~l~i~  171 (292)
T 2aot_A          110 NVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVK---------DIPATLKFFHSLLGTNAKMLII  171 (292)
T ss_dssp             TEEEEEECSCHHHHHHHHHTTTCCCCEEEEEEESCGGGCS---------CHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cceEEEEecchhhhhhhhccccCCCceeEEEEeeeeeecC---------CHHHHHHHHHHHcCCCcEEEEE
Confidence            2111121    1222     12 48999999999998765         3467999999999999999985

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.47  E-value=3.8e-08  Score=92.09  Aligned_cols=116  Identities=11%  Similarity=0.142  Sum_probs=79.2

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc-cc-ccccccccCCCCCCccccccccCccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IG-VYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig-~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      -..|||+|||.|.++..|.....   +|+-.|.+ ..+..+-++    |+ +- ...|..+ ++. +.+||+|.|..+|.
T Consensus       121 ~~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~-~~~fD~i~~~~~~~  195 (286)
T 3m70_A          121 PCKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDINA-ANI-QENYDFIVSTVVFM  195 (286)
T ss_dssp             SCEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGG-CCC-CSCEEEEEECSSGG
T ss_pred             CCcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEecccc-ccc-cCCccEEEEccchh
Confidence            35799999999999999988865   66777765 666555443    43 11 2233332 232 78999999999887


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEeCC--------------HHHHHHHHHHHhcCCceEEEe
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS--------------PEVIDKVSRIANTVRWTAAVH  354 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~--------------~~~~~~~~~~~~~l~W~~~~~  354 (378)
                      ...       .-.+..+|-++-|+|+|||.+++...              .-.-++++++.+.  |++...
T Consensus       196 ~~~-------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~  257 (286)
T 3m70_A          196 FLN-------RERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEY  257 (286)
T ss_dssp             GSC-------GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred             hCC-------HHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEE
Confidence            653       22345799999999999999777421              0123456666665  887654

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.47  E-value=1.4e-07  Score=83.35  Aligned_cols=71  Identities=14%  Similarity=0.164  Sum_probs=57.5

Q ss_pred             CCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccC-ChHHHHHHHhhcccCCcEEEEEcC
Q 017068           14 RDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~-~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .|.|+.+++.|+++    +..+.+..+|...+|+++++||+|+|+.  .|+.. ....+++++.|+|||||+++++.+
T Consensus        57 vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  132 (202)
T 2kw5_A           57 VDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIF--CHLPSSLRQQLYPKVYQGLKPGGVFILEGF  132 (202)
T ss_dssp             ECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCCCHHHHHHHHHHHHTTCCSSEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEh--hcCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            35567888888876    5567888889999999999999999964  45532 234899999999999999999865

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.47  E-value=4.8e-08  Score=86.09  Aligned_cols=143  Identities=15%  Similarity=0.087  Sum_probs=78.4

Q ss_pred             eeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhh----cc--ccccccccccCCC---CCCccccccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GL--IGVYHDWCEPFST---YPRTYDLIHV  292 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig~~~~w~~~f~t---yprtyDliH~  292 (378)
                      =..|||+|||+|.++..|...  ..   +++-.|.+ ..+..+-++    |+  -=+..|..++++.   .+.+||+|.|
T Consensus        31 ~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~  107 (215)
T 4dzr_A           31 GTRVIDVGTGSGCIAVSIALACPGV---SVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVS  107 (215)
T ss_dssp             TEEEEEEESSBCHHHHHHHHHCTTE---EEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred             CCEEEEecCCHhHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEE
Confidence            468999999999999988765  33   44555543 444433332    22  1223444444332   2378999999


Q ss_pred             cCccccccCCCC--C-----CCCCC----------ccceeeeecccccCCCe-EEEeCCHHHHHHHHHHHh--cCCceEE
Q 017068          293 SGIESLIKNPGS--N-----KNSCS----------LVDLMVEMDRMLRPEGT-VVVRDSPEVIDKVSRIAN--TVRWTAA  352 (378)
Q Consensus       293 ~~~~~~~~~~~~--~-----~~~c~----------~~~~l~EmDRiLRPgG~-~ii~d~~~~~~~~~~~~~--~l~W~~~  352 (378)
                      +-.|........  .     .....          +..++-++-|+|+|||+ +++.-.....+.+.++++  .-.|...
T Consensus       108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~  187 (215)
T 4dzr_A          108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRV  187 (215)
T ss_dssp             CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEEC
T ss_pred             CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceE
Confidence            655432110000  0     00001          15788899999999999 677655555666777766  5556543


Q ss_pred             EecCCCCCCCCeEEEEEEec
Q 017068          353 VHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       353 ~~~~~~~~~~~e~~l~~~K~  372 (378)
                      ..-.+  ..+.+++++++|+
T Consensus       188 ~~~~~--~~~~~r~~~~~~~  205 (215)
T 4dzr_A          188 RKVKD--LRGIDRVIAVTRE  205 (215)
T ss_dssp             CEEEC--TTSCEEEEEEEEC
T ss_pred             EEEEe--cCCCEEEEEEEEc
Confidence            22111  1356899999875

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.46  E-value=4.7e-08  Score=90.36  Aligned_cols=96  Identities=24%  Similarity=0.309  Sum_probs=68.2

Q ss_pred             CeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCCCCCCcccccccc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFSTYPRTYDLIHVS  293 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~typrtyDliH~~  293 (378)
                      .-.+|||+|||.|.++..|... +.   +|+-.|.+ .++..+-++    |+   +- ...|..+ +|.-+.+||+|++.
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~  136 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAMD-LPFEDASFDAVWAL  136 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCTTCEEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc-CCCCCCCccEEEEe
Confidence            3458999999999999888753 43   56666665 667665554    44   21 2233332 33223799999999


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .++....         +...+|-|+-|+|+|||.+++.+
T Consensus       137 ~~l~~~~---------~~~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          137 ESLHHMP---------DRGRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             SCTTTSS---------CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             chhhhCC---------CHHHHHHHHHHHcCCCeEEEEEE
Confidence            8888653         23689999999999999999975

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.46  E-value=3.4e-08  Score=88.40  Aligned_cols=97  Identities=14%  Similarity=0.214  Sum_probs=68.5

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc-------ccc-cccccccCCCCCCccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-------IGV-YHDWCEPFSTYPRTYDLIHV  292 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-------ig~-~~~w~~~f~typrtyDliH~  292 (378)
                      .+|||+|||+|.++..|.....   +|+-.|.+ ..+..+-++    |+       +-. ..|. +.++.-+.+||+|.+
T Consensus        32 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v~~  107 (235)
T 3sm3_A           32 DEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA-SSLSFHDSSFDFAVM  107 (235)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT-TSCCSCTTCEEEEEE
T ss_pred             CeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecc-cccCCCCCceeEEEE
Confidence            4799999999999999988765   66777765 677666653    22       111 1222 223333489999999


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ..++..+.      +.-....+|-|+-|+|||||.+++.+
T Consensus       108 ~~~l~~~~------~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (235)
T 3sm3_A          108 QAFLTSVP------DPKERSRIIKEVFRVLKPGAYLYLVE  141 (235)
T ss_dssp             ESCGGGCC------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhhcCC------CHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            98888764      11112378999999999999999974

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.46  E-value=1.5e-08  Score=89.89  Aligned_cols=95  Identities=15%  Similarity=0.154  Sum_probs=70.8

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcccc---ccccccccCCCCCCccccccccCccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIG---VYHDWCEPFSTYPRTYDLIHVSGIESLIKN  301 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig---~~~~w~~~f~typrtyDliH~~~~~~~~~~  301 (378)
                      ..|||+|||.|.++..|.....   +|+-.|.+ .++..+-++|+..   +..|..+.  ..+.+||+|.|..++..+. 
T Consensus        48 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~~l~~~~-  121 (218)
T 3ou2_A           48 GDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW--TPDRQWDAVFFAHWLAHVP-  121 (218)
T ss_dssp             SEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC--CCSSCEEEEEEESCGGGSC-
T ss_pred             CeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHhcCCCCeEEEecccccC--CCCCceeEEEEechhhcCC-
Confidence            4899999999999999987754   66677765 7888887777422   22333332  2248999999999888764 


Q ss_pred             CCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          302 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       302 ~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                            .-.+..+|-|+-|+|+|||.+++.+
T Consensus       122 ------~~~~~~~l~~~~~~L~pgG~l~~~~  146 (218)
T 3ou2_A          122 ------DDRFEAFWESVRSAVAPGGVVEFVD  146 (218)
T ss_dssp             ------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ------HHHHHHHHHHHHHHcCCCeEEEEEe
Confidence                  1124678999999999999999984

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.46  E-value=6.7e-08  Score=85.23  Aligned_cols=148  Identities=11%  Similarity=0.011  Sum_probs=89.9

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCC-CCCCc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFS-TYPRT  286 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~-typrt  286 (378)
                      +..+  .+|||+|||+|.++..|...   .-   +|+..|.. ..+..+-++    |+   +- +..|.. .++ ..+.+
T Consensus        20 ~~~~--~~vLDlGcG~G~~~~~l~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~   93 (197)
T 3eey_A           20 VKEG--DTVVDATCGNGNDTAFLASLVGENG---RVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQ-NMDKYIDCP   93 (197)
T ss_dssp             CCTT--CEEEESCCTTSHHHHHHHHHHCTTC---EEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGG-GGGGTCCSC
T ss_pred             CCCC--CEEEEcCCCCCHHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHH-HHhhhccCC
Confidence            4444  38999999999999888754   22   55667765 666665544    33   22 222322 233 33479


Q ss_pred             cccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC------CHHHHHHHHHHHhcCC---ceEEEecCC
Q 017068          287 YDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD------SPEVIDKVSRIANTVR---WTAAVHDKE  357 (378)
Q Consensus       287 yDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d------~~~~~~~~~~~~~~l~---W~~~~~~~~  357 (378)
                      ||+|.++..+-...+.......-....++-++-|+|+|||++++..      .......+.+..+.+.   |++.....-
T Consensus        94 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~  173 (197)
T 3eey_A           94 VKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFI  173 (197)
T ss_dssp             EEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEET
T ss_pred             ceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEec
Confidence            9999987555111100000000012358999999999999999874      2235566677766655   887765444


Q ss_pred             CCCCCCeEEEEEEecC
Q 017068          358 PGSNGREKILVATKSL  373 (378)
Q Consensus       358 ~~~~~~e~~l~~~K~~  373 (378)
                      +.......+++.+|..
T Consensus       174 ~~~~~pp~~~~~~~~~  189 (197)
T 3eey_A          174 NQANCPPILVCIEKIS  189 (197)
T ss_dssp             TCCSCCCEEEEEEECC
T ss_pred             cCccCCCeEEEEEEcc
Confidence            4444567788888764

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.46  E-value=5.4e-08  Score=91.60  Aligned_cols=97  Identities=11%  Similarity=0.114  Sum_probs=68.7

Q ss_pred             CCeeEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----cc-cc-ccccccccCCCCCCccccccc
Q 017068          223 PAIRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GL-IG-VYHDWCEPFSTYPRTYDLIHV  292 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig-~~~~w~~~f~typrtyDliH~  292 (378)
                      ..-.+|||+|||+|.++..|.+.   ..   +|+-.|.+ .++..+-++    |+ +- ...|..+ ++ ++.+||+|||
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~   95 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPYDSEFLEGDATE-IE-LNDKYDIAIC   95 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTT-CC-CSSCEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhh-cC-cCCCeeEEEE
Confidence            34568999999999999999875   34   44555654 666655544    21 11 2233332 33 4789999999


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      ..++....         +...+|-|+-|+|+|||++++.+.
T Consensus        96 ~~~l~~~~---------~~~~~l~~~~~~LkpgG~l~~~~~  127 (284)
T 3gu3_A           96 HAFLLHMT---------TPETMLQKMIHSVKKGGKIICFEP  127 (284)
T ss_dssp             ESCGGGCS---------SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CChhhcCC---------CHHHHHHHHHHHcCCCCEEEEEec
Confidence            99888654         236899999999999999998764

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.46  E-value=6.4e-08  Score=91.03  Aligned_cols=53  Identities=26%  Similarity=0.441  Sum_probs=41.9

Q ss_pred             EEEcccCC-CCC-----CCCceeEEEecCccccccCC---hHHHHHHHhhcccCCcEEEEEc
Q 017068           33 VAMLGTRR-LPF-----PAFSFDIVHCSRCLIPFTAY---NATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        33 ~~v~dae~-LPf-----pd~SFD~V~cs~~l~hw~~~---~~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      +..+|++. +||     ++++||+|+|+.+++|....   ...+++|+.|+|||||+|+++.
T Consensus       154 ~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          154 VLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             EECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            45568777 775     45679999999999884332   2499999999999999999974

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.45  E-value=6.4e-08  Score=89.63  Aligned_cols=118  Identities=16%  Similarity=0.184  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccc-ccccccccc
Q 017068          202 SRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLI-GVYHDWCEP  279 (378)
Q Consensus       202 ~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGli-g~~~~w~~~  279 (378)
                      ...|+.......+.+...+.  .-.+|||+|||+|.++..|.....   +|+-.|.+ .++..+-++..- -...|.. .
T Consensus        34 ~~~~~~~~~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~d~~-~  107 (260)
T 2avn_A           34 TPKWKLYHRLIGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAE-D  107 (260)
T ss_dssp             SHHHHHHHHHHHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCTT-S
T ss_pred             ccchhHHHHHHHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcCCCEEECcHH-H
Confidence            34554333333343433344  335899999999999999988865   66777766 788877777541 1112222 2


Q ss_pred             CCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          280 FSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       280 f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      ++.-+.+||+|.|...+..+.      .  +...+|-|+-|+|+|||.+++...
T Consensus       108 ~~~~~~~fD~v~~~~~~~~~~------~--~~~~~l~~~~~~LkpgG~l~~~~~  153 (260)
T 2avn_A          108 LPFPSGAFEAVLALGDVLSYV------E--NKDKAFSEIRRVLVPDGLLIATVD  153 (260)
T ss_dssp             CCSCTTCEEEEEECSSHHHHC------S--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCCCEEEEEEcchhhhcc------c--cHHHHHHHHHHHcCCCeEEEEEeC
Confidence            332247999999987665553      1  157899999999999999999753

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.45  E-value=1.5e-07  Score=89.37  Aligned_cols=76  Identities=14%  Similarity=0.131  Sum_probs=63.0

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC----CC--eEEEEcccCCCCCCCCceeEEEecCccccccCChH--HHHHHHhhccc
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG----IP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNA--TYLIEVDRLLR   76 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg----~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~--~~L~Ev~RVLk   76 (378)
                      .|+++++     |+.+++.|+++.    ..  +.+..+|+..+|++ ++||+|+|..+++|++++..  .+++++.|+||
T Consensus       145 ~v~gvD~-----s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~Lk  218 (305)
T 3ocj_A          145 QLVGIDY-----DPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALK  218 (305)
T ss_dssp             EEEEEES-----CHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEE
T ss_pred             eEEEEEC-----CHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcC
Confidence            4555555     568999998863    23  67889999999998 99999999999999988763  37999999999


Q ss_pred             CCcEEEEEcC
Q 017068           77 PGGYLVISGP   86 (378)
Q Consensus        77 PGG~lvis~p   86 (378)
                      |||+++++..
T Consensus       219 pgG~l~i~~~  228 (305)
T 3ocj_A          219 PGGALVTSFL  228 (305)
T ss_dssp             EEEEEEEECC
T ss_pred             CCeEEEEEec
Confidence            9999999864

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.45  E-value=1.9e-08  Score=99.70  Aligned_cols=72  Identities=19%  Similarity=0.214  Sum_probs=61.6

Q ss_pred             CCChHHHHHHHHHcCCCeE---EEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           14 RDSHKAQIQFALERGIPAF---VAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        14 ~D~se~~vq~A~erg~~~~---~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .|.|+.+++.|++++++..   +...+++.+||++++||+|+|..+++|+++.. .+++|+.|+|||||++++..+
T Consensus       135 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~d~~-~~l~~~~r~LkpgG~l~i~~~  209 (416)
T 4e2x_A          135 FEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLCHIPYVQ-SVLEGVDALLAPDGVFVFEDP  209 (416)
T ss_dssp             ECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGGGCTTHH-HHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECChHHhcCCHH-HHHHHHHHHcCCCeEEEEEeC
Confidence            3556899999999987654   23345678899999999999999999998777 999999999999999999865

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.45  E-value=1.3e-07  Score=83.51  Aligned_cols=77  Identities=23%  Similarity=0.306  Sum_probs=62.1

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC---CCeEEEEcccCCCCCCCCceeEEEecCcccccc--------------CChHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT--------------AYNATY   67 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg---~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~--------------~~~~~~   67 (378)
                      .|++++++     +.+++.|+++.   ..+.+..+|+..+|+++++||+|+|..++.|..              +....+
T Consensus        67 ~v~~~D~s-----~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (215)
T 2pxx_A           67 NVTSVDYS-----SVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQV  141 (215)
T ss_dssp             CEEEEESC-----HHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHH
T ss_pred             cEEEEeCC-----HHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHH
Confidence            46666554     68999998874   246788899999999999999999988876654              122489


Q ss_pred             HHHHhhcccCCcEEEEEcC
Q 017068           68 LIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        68 L~Ev~RVLkPGG~lvis~p   86 (378)
                      ++++.|+|||||.+++..+
T Consensus       142 l~~~~~~LkpgG~li~~~~  160 (215)
T 2pxx_A          142 LSEVSRVLVPGGRFISMTS  160 (215)
T ss_dssp             HHHHHHHEEEEEEEEEEES
T ss_pred             HHHHHHhCcCCCEEEEEeC
Confidence            9999999999999999876

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.44  E-value=1.4e-07  Score=84.90  Aligned_cols=72  Identities=18%  Similarity=0.250  Sum_probs=59.5

Q ss_pred             CCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecC-ccccccC--ChHHHHHHHhhcccCCcEEEEEcC
Q 017068           14 RDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSR-CLIPFTA--YNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~-~l~hw~~--~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .|.|+.+++.|+++    +..+.+..+|...+|++ ++||+|+|.. +++|+.+  ....+++++.|+|||||+++++.+
T Consensus        65 ~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  143 (246)
T 1y8c_A           65 VDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            35567888888876    33678888899999988 8999999998 9999843  224899999999999999999765

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.44  E-value=5.8e-08  Score=88.64  Aligned_cols=120  Identities=18%  Similarity=0.202  Sum_probs=82.4

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc------cc-ccccccccCCCCCCccccccccCcc
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL------IG-VYHDWCEPFSTYPRTYDLIHVSGIE  296 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl------ig-~~~~w~~~f~typrtyDliH~~~~~  296 (378)
                      -.+|||+|||+|.++..|.....  -+|+-.|.+ ..+..+-++.-      +- ...|.. .++..+.+||+|.|..++
T Consensus        80 ~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l  156 (241)
T 2ex4_A           80 TSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ-DFTPEPDSYDVIWIQWVI  156 (241)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGG-GCCCCSSCEEEEEEESCG
T ss_pred             CCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChh-hcCCCCCCEEEEEEcchh
Confidence            46899999999999999887641  255666655 66766655532      11 122322 234334689999999888


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH---------------HHHHHHHHHHhcCCceEEEe
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP---------------EVIDKVSRIANTVRWTAAVH  354 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~---------------~~~~~~~~~~~~l~W~~~~~  354 (378)
                      ..+.      + -.+..+|-|+-|+|+|||.+++.+..               ...+++.++++..-++....
T Consensus       157 ~~~~------~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  222 (241)
T 2ex4_A          157 GHLT------D-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE  222 (241)
T ss_dssp             GGSC------H-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred             hhCC------H-HHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence            7664      1 11347899999999999999996521               14677888888888887654

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.43  E-value=3e-08  Score=90.77  Aligned_cols=96  Identities=17%  Similarity=0.220  Sum_probs=69.5

Q ss_pred             CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc--cc-ccccccccCCCCCCccccccccCc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL--IG-VYHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig-~~~~w~~~f~typrtyDliH~~~~  295 (378)
                      .-.+|||+|||.|.++..|....-   +|+-.|.+ .++..+-++    |+  +- ...|. +.++.-+.+||+|.|..+
T Consensus        21 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~v~~~~~   96 (239)
T 1xxl_A           21 AEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA-ESLPFPDDSFDIITCRYA   96 (239)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT-TBCCSCTTCEEEEEEESC
T ss_pred             CCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccc-ccCCCCCCcEEEEEECCc
Confidence            345899999999999998887653   66777765 666655443    43  22 22333 334433489999999988


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      +..+.         +...+|-|+-|+|||||++++.+
T Consensus        97 l~~~~---------~~~~~l~~~~~~LkpgG~l~~~~  124 (239)
T 1xxl_A           97 AHHFS---------DVRKAVREVARVLKQDGRFLLVD  124 (239)
T ss_dssp             GGGCS---------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhcc---------CHHHHHHHHHHHcCCCcEEEEEE
Confidence            87664         24689999999999999999974

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.43  E-value=6.6e-08  Score=90.41  Aligned_cols=94  Identities=14%  Similarity=0.157  Sum_probs=70.0

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCC-CCCCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFS-TYPRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~-typrtyDliH~~~~  295 (378)
                      ..|||+|||+|.++..|.....   +|+-.|.+ .++..+-++    |+   +- +..|..+ ++ ..+.+||+|.|..+
T Consensus        70 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~v~~~~~  145 (285)
T 4htf_A           70 LRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQD-VASHLETPVDLILFHAV  145 (285)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGG-TGGGCSSCEEEEEEESC
T ss_pred             CEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHH-hhhhcCCCceEEEECch
Confidence            5799999999999999988765   56667765 777766655    43   21 2233332 33 23489999999999


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      +..+.         +...+|-|+-|+|+|||.+++..
T Consensus       146 l~~~~---------~~~~~l~~~~~~LkpgG~l~~~~  173 (285)
T 4htf_A          146 LEWVA---------DPRSVLQTLWSVLRPGGVLSLMF  173 (285)
T ss_dssp             GGGCS---------CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhccc---------CHHHHHHHHHHHcCCCeEEEEEE
Confidence            88664         23679999999999999999975

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.43  E-value=3.5e-08  Score=92.24  Aligned_cols=95  Identities=13%  Similarity=0.140  Sum_probs=70.0

Q ss_pred             CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc--cccccccccccCCCCCCccccccccCcccccc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG--LIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK  300 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~w~~~f~typrtyDliH~~~~~~~~~  300 (378)
                      .-.+|||+|||+|.++..|.....   +|+-.|.+ .++..+-++.  +--...|..+ ++ ++.+||+|+|..++....
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~l~~~~  131 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNYPHLHFDVADARN-FR-VDKPLDAVFSNAMLHWVK  131 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSCEEECCTTT-CC-CSSCEEEEEEESCGGGCS
T ss_pred             CCCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhCCCCEEEECChhh-CC-cCCCcCEEEEcchhhhCc
Confidence            346899999999999999987554   56666765 7777776663  2112233322 44 478999999998887543


Q ss_pred             CCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       301 ~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                               +...+|-|+-|+|||||++++..
T Consensus       132 ---------d~~~~l~~~~~~LkpgG~l~~~~  154 (279)
T 3ccf_A          132 ---------EPEAAIASIHQALKSGGRFVAEF  154 (279)
T ss_dssp             ---------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---------CHHHHHHHHHHhcCCCcEEEEEe
Confidence                     34678999999999999999963

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.42  E-value=1.4e-07  Score=84.32  Aligned_cols=72  Identities=24%  Similarity=0.280  Sum_probs=57.6

Q ss_pred             CChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccC-ChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~-~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |+|+.+++.|+++    +..+.+..+|...+++++++||+|+|..+++++.. ....+++++.|+|||||++++..+
T Consensus        67 D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  143 (227)
T 1ve3_A           67 DISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  143 (227)
T ss_dssp             ESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            4456888888775    35678889999999999999999999988433332 224899999999999999999865

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.42  E-value=2.7e-08  Score=90.91  Aligned_cols=98  Identities=15%  Similarity=0.157  Sum_probs=71.7

Q ss_pred             CeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhhcc----c-cccccccccCCCCCCccccccccCcc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGL----I-GVYHDWCEPFSTYPRTYDLIHVSGIE  296 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eRGl----i-g~~~~w~~~f~typrtyDliH~~~~~  296 (378)
                      .-.+|||+|||+|.++..|... ..   +|+-.|.+ .++..+-++.-    + -...|..+ ++.-+.+||+|+|..++
T Consensus        55 ~~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l  130 (266)
T 3ujc_A           55 ENSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGNNKIIFEANDILT-KEFPENNFDLIYSRDAI  130 (266)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTT-CCCCTTCEEEEEEESCG
T ss_pred             CCCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcCCCeEEEECcccc-CCCCCCcEEEEeHHHHH
Confidence            3458999999999999999875 44   56677765 78887777642    1 12334433 23224899999999888


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ..+.       .-+...+|-|+-|+|||||.+++.+
T Consensus       131 ~~~~-------~~~~~~~l~~~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          131 LALS-------LENKNKLFQKCYKWLKPTGTLLITD  159 (266)
T ss_dssp             GGSC-------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhcC-------hHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            8661       1234678999999999999999985

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.41  E-value=5.7e-08  Score=86.51  Aligned_cols=97  Identities=10%  Similarity=0.124  Sum_probs=71.0

Q ss_pred             CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccccccccccccCCCCC-CccccccccCccccccC
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYP-RTYDLIHVSGIESLIKN  301 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f~typ-rtyDliH~~~~~~~~~~  301 (378)
                      .-.+|||+|||.|.++..|...+.   +++-.|.+ ..+..+-++..--...|......+++ .+||+|.|..++..+. 
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~-  107 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKENGT---RVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLF-  107 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHTTTC---EEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSS-
T ss_pred             CCCcEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcC-
Confidence            346899999999999999988864   67777766 67776666643112233332112333 7999999999888664 


Q ss_pred             CCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          302 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       302 ~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                              +...+|-|+-|+|+|||++++..
T Consensus       108 --------~~~~~l~~~~~~L~~gG~l~~~~  130 (230)
T 3cc8_A          108 --------DPWAVIEKVKPYIKQNGVILASI  130 (230)
T ss_dssp             --------CHHHHHHHTGGGEEEEEEEEEEE
T ss_pred             --------CHHHHHHHHHHHcCCCCEEEEEe
Confidence                    23579999999999999999974

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.41  E-value=2.5e-07  Score=89.54  Aligned_cols=130  Identities=15%  Similarity=0.118  Sum_probs=85.7

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc--ccc----cccccc-ccCCCCCCccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG--LIG----VYHDWC-EPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG--lig----~~~~w~-~~f~typrtyDliH~~~~~~  297 (378)
                      ++|||+|||+|+|+..|+..+.  -.|+..|.+ +||...+.+-  ++.    -..... +.+|  ..+||++.|+-.|.
T Consensus        87 ~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~--~~~fD~v~~d~sf~  162 (291)
T 3hp7_A           87 MITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFT--EGLPSFASIDVSFI  162 (291)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCT--TCCCSEEEECCSSS
T ss_pred             cEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCC--CCCCCEEEEEeeHh
Confidence            5899999999999988876642  145677765 8887755421  111    011111 1122  14699999988776


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEeCC----------------------HHHHHHHHHHHhcCCceEEEec
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS----------------------PEVIDKVSRIANTVRWTAAVHD  355 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~----------------------~~~~~~~~~~~~~l~W~~~~~~  355 (378)
                      .+            ..+|-|+-|+|+|||.+++--.                      ...++++.+++...-|.+....
T Consensus       163 sl------------~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~  230 (291)
T 3hp7_A          163 SL------------NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLD  230 (291)
T ss_dssp             CG------------GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             hH------------HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence            43            5799999999999999988610                      1367778888889999986532


Q ss_pred             C--CCCCC-CCeEEEEEEe
Q 017068          356 K--EPGSN-GREKILVATK  371 (378)
Q Consensus       356 ~--~~~~~-~~e~~l~~~K  371 (378)
                      .  -.|+. +.|=++.++|
T Consensus       231 ~spi~g~~gn~e~l~~~~~  249 (291)
T 3hp7_A          231 FSPIQGGHGNIEFLAHLEK  249 (291)
T ss_dssp             ECSSCCGGGCCCEEEEEEE
T ss_pred             ECCCCCCCcCHHHHHHhhh
Confidence            2  22333 4455666665

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.41  E-value=2.6e-07  Score=83.20  Aligned_cols=72  Identities=15%  Similarity=0.092  Sum_probs=59.6

Q ss_pred             CCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecC-ccccccCC--hHHHHHHHhhcccCCcEEEEEcC
Q 017068           14 RDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSR-CLIPFTAY--NATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        14 ~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~-~l~hw~~~--~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .|.|+.+++.|+++...+.+..+|...+|+ +++||+|+|+. +++|+.++  ...+++++.|+|||||+++++.+
T Consensus        68 ~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (239)
T 3bxo_A           68 LELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPW  142 (239)
T ss_dssp             EESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             EeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            345579999999986667888899999988 78999999766 77777543  24899999999999999999764

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.40  E-value=6.2e-08  Score=83.80  Aligned_cols=131  Identities=17%  Similarity=0.168  Sum_probs=81.4

Q ss_pred             CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc-----ccccccccccCCCCCCcccccccc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-----IGVYHDWCEPFSTYPRTYDLIHVS  293 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-----ig~~~~w~~~f~typrtyDliH~~  293 (378)
                      .-..|||+|||.|.++..+.....   +|.-.|.. ..+..+-++    |+     --...|..+.++  +.+||+|.++
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~  126 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIITN  126 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEEC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--cCCceEEEEC
Confidence            345899999999999998887744   56666655 666655554    32     123345555433  5789999997


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH-HHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEEEEe
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATK  371 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K  371 (378)
                      ..+..-        .-.+..++-++-|+|+|||.+++.... ....++.+..+..-+++......    ..-.++.++|
T Consensus       127 ~~~~~~--------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~k  193 (194)
T 1dus_A          127 PPIRAG--------KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIK----GGYRVLKSKK  193 (194)
T ss_dssp             CCSTTC--------HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEE----TTEEEEEEEC
T ss_pred             CCcccc--------hhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEEecC----CcEEEEEEee
Confidence            655420        112457899999999999999998643 33333444444333344433222    2345555554

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.40  E-value=2.7e-07  Score=80.58  Aligned_cols=75  Identities=16%  Similarity=0.259  Sum_probs=59.5

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCC-hHHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~-~~~~L~Ev~RVLkPG   78 (378)
                      .|++++++     +.+++.|+++    +. .+.+..+|...+|+ +++||+|+|..+++|+... ...+++++.|+||||
T Consensus        56 ~v~~vD~s-----~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~g  129 (199)
T 2xvm_A           56 DVDAWDKN-----AMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG  129 (199)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEE
T ss_pred             eEEEEECC-----HHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCC
Confidence            45555554     6777777764    44 57788899999999 8999999999999988632 248999999999999


Q ss_pred             cEEEEEc
Q 017068           79 GYLVISG   85 (378)
Q Consensus        79 G~lvis~   85 (378)
                      |++++..
T Consensus       130 G~l~~~~  136 (199)
T 2xvm_A          130 GYNLIVA  136 (199)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            9988754

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.40  E-value=1.8e-07  Score=84.88  Aligned_cols=116  Identities=17%  Similarity=0.108  Sum_probs=83.3

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc----c---cc-ccccccccCCCCCCccccccccCcc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG----L---IG-VYHDWCEPFSTYPRTYDLIHVSGIE  296 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG----l---ig-~~~~w~~~f~typrtyDliH~~~~~  296 (378)
                      .+|||+|||+|.++..|.....   +|+-.|.+ ..+..+-++.    .   +- ...|..+ ++ .+.+||+|.|..+|
T Consensus        68 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~~l  142 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMASPER---FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT-WR-PTELFDLIFDYVFF  142 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCBTTE---EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTT-CC-CSSCEEEEEEESST
T ss_pred             CCEEEeCCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhc-CC-CCCCeeEEEEChhh
Confidence            4899999999999999988765   56777765 6776665553    2   11 2233333 22 34699999999888


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH-----------HHHHHHHHHHhcCCceEEE
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-----------EVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-----------~~~~~~~~~~~~l~W~~~~  353 (378)
                      ..+.       .-....+|-++-|+|+|||++++.+-.           -..++++++++.--|+...
T Consensus       143 ~~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  203 (235)
T 3lcc_A          143 CAIE-------PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVS  203 (235)
T ss_dssp             TTSC-------GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEE
T ss_pred             hcCC-------HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEE
Confidence            7653       234467899999999999999985321           1357788888888898764

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.39  E-value=2.2e-07  Score=82.49  Aligned_cols=69  Identities=23%  Similarity=0.304  Sum_probs=55.5

Q ss_pred             CChHHHHHHHHHcCCCeEEEEcccCCC---CCCCCc-eeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALERGIPAFVAMLGTRRL---PFPAFS-FDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~erg~~~~~~v~dae~L---Pfpd~S-FD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |+|+.+++.|+++ ..+.+..++...+   |++++. ||+|+|..+++ ..+.. .+++++.|+|||||+++++.+
T Consensus        81 D~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~~~-~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A           81 DGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQDII-ELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             ESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SSCCH-HHHHHHHHTEEEEEEEEEEEC
T ss_pred             cCCHHHHHHHHHh-cccccchhhHHhhcccccccCCCccEEEECchhh-hhhHH-HHHHHHHHHhCCCeEEEEEec
Confidence            4557999999998 3455666666555   665555 99999999887 56666 999999999999999999876

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.38  E-value=7.6e-08  Score=88.82  Aligned_cols=71  Identities=18%  Similarity=0.088  Sum_probs=54.1

Q ss_pred             CCChHHHHHHHHHc----CCCeEEEEcccCC--CCCCCCceeEEEe-----cCccccccCChHHHHHHHhhcccCCcEEE
Q 017068           14 RDSHKAQIQFALER----GIPAFVAMLGTRR--LPFPAFSFDIVHC-----SRCLIPFTAYNATYLIEVDRLLRPGGYLV   82 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~~~~~~v~dae~--LPfpd~SFD~V~c-----s~~l~hw~~~~~~~L~Ev~RVLkPGG~lv   82 (378)
                      .|+|+.|++.|+++    +..+.+..++++.  .++++++||.|++     ...+.|+.+.. .+++|+.|+|||||.|+
T Consensus        89 id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~-~~~~e~~rvLkPGG~l~  167 (236)
T 3orh_A           89 IECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFN-FIKNHAFRLLKPGGVLT  167 (236)
T ss_dssp             EECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHH-HHHHTHHHHEEEEEEEE
T ss_pred             EeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeeecccchhhhcchh-hhhhhhhheeCCCCEEE
Confidence            35557999999885    3445666777654  3689999999974     45556666666 89999999999999999


Q ss_pred             EEc
Q 017068           83 ISG   85 (378)
Q Consensus        83 is~   85 (378)
                      +..
T Consensus       168 f~~  170 (236)
T 3orh_A          168 YCN  170 (236)
T ss_dssp             ECC
T ss_pred             EEe
Confidence            853

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.38  E-value=5.2e-07  Score=82.76  Aligned_cols=135  Identities=16%  Similarity=0.145  Sum_probs=85.0

Q ss_pred             eEEEecCCcceeeeeecc--CCCeeEEEeccCCCC-cchHHHHh----hcc--ccccccccccCCC---CCCcccccccc
Q 017068          226 RNIMDMNAFFGGFAAALT--SDPVWVMNVVPARKS-STLSVIYD----RGL--IGVYHDWCEPFST---YPRTYDLIHVS  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~--~~~vwvmnv~p~~~~-~~l~~i~e----RGl--ig~~~~w~~~f~t---yprtyDliH~~  293 (378)
                      .+|||+|||+|.++..|.  ....   .|+-.|.+ .++.++-+    .|+  +-+++.=.+.++.   .+.+||+|.|.
T Consensus        72 ~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  148 (240)
T 1xdz_A           72 NTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR  148 (240)
T ss_dssp             CEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CEEEEecCCCCHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence            589999999999888877  4444   45666655 56655544    354  3333221122332   25789999985


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC---HHHHHHHHHHHhcCCceEEEec-C-CCCCCCCeEEEE
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS---PEVIDKVSRIANTVRWTAAVHD-K-EPGSNGREKILV  368 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~---~~~~~~~~~~~~~l~W~~~~~~-~-~~~~~~~e~~l~  368 (378)
                      .+             ..+..++-++-|+|+|||.+++...   .+.+.++.+.++...++..... - -....+...+++
T Consensus       149 ~~-------------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~  215 (240)
T 1xdz_A          149 AV-------------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMV  215 (240)
T ss_dssp             CC-------------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEE
T ss_pred             cc-------------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEE
Confidence            42             2346789999999999999998753   3456667777777788764321 1 111123456677


Q ss_pred             EEecCCCC
Q 017068          369 ATKSLWKL  376 (378)
Q Consensus       369 ~~K~~w~~  376 (378)
                      ++|.=.++
T Consensus       216 ~~k~~~~~  223 (240)
T 1xdz_A          216 IRKIKNTP  223 (240)
T ss_dssp             EEECSCCC
T ss_pred             EEecCCCC
Confidence            77764443

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.37  E-value=1.1e-08  Score=90.58  Aligned_cols=112  Identities=15%  Similarity=0.113  Sum_probs=75.4

Q ss_pred             EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc-ccc-cccccccCCCCCCccccccccCccccc
Q 017068          227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IGV-YHDWCEPFSTYPRTYDLIHVSGIESLI  299 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig~-~~~w~~~f~typrtyDliH~~~~~~~~  299 (378)
                      +|||+|||.|.++..|.....   +|+-.|.+ ..+..+-++    |+ +-+ ..|.. .++.-+.+||+|.|.  +..+
T Consensus        32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~--~~~~  105 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLA-DFDIVADAWEGIVSI--FCHL  105 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTT-TBSCCTTTCSEEEEE--CCCC
T ss_pred             CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChh-hcCCCcCCccEEEEE--hhcC
Confidence            899999999999999998865   67777766 677666655    33 211 22222 233223799999984  3322


Q ss_pred             cCCCCCCCCCCccceeeeecccccCCCeEEEeCC-----------------HHHHHHHHHHHhcCCceEEE
Q 017068          300 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-----------------PEVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       300 ~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-----------------~~~~~~~~~~~~~l~W~~~~  353 (378)
                             ..-....+|-++-|+|+|||++++...                 .-..++++++++  -|++..
T Consensus       106 -------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~  167 (202)
T 2kw5_A          106 -------PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLI  167 (202)
T ss_dssp             -------CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEE
T ss_pred             -------CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEE
Confidence                   112346789999999999999999841                 013566777766  677653

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.37  E-value=7e-08  Score=88.39  Aligned_cols=101  Identities=16%  Similarity=0.153  Sum_probs=72.2

Q ss_pred             hcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc---c-cccccccccCCCCCCcccccccc
Q 017068          219 KLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL---I-GVYHDWCEPFSTYPRTYDLIHVS  293 (378)
Q Consensus       219 ~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl---i-g~~~~w~~~f~typrtyDliH~~  293 (378)
                      .+....=..|||+|||.|.++..|.....-  +|+-.|.+ ..+..+-++.-   + -...|. +.++..+.+||+|.|.
T Consensus        39 ~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~  115 (253)
T 3g5l_A           39 MLPDFNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAI-EDIAIEPDAYNVVLSS  115 (253)
T ss_dssp             TCCCCTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCG-GGCCCCTTCEEEEEEE
T ss_pred             hhhccCCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcch-hhCCCCCCCeEEEEEc
Confidence            344334578999999999999999876431  55666765 77777776642   1 122233 2344334899999999


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      .++..+.         +...+|-|+-|+|+|||.+++.
T Consensus       116 ~~l~~~~---------~~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          116 LALHYIA---------SFDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             SCGGGCS---------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhhhh---------hHHHHHHHHHHHcCCCcEEEEE
Confidence            9888663         2468999999999999999997

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.37  E-value=3e-07  Score=87.97  Aligned_cols=77  Identities=17%  Similarity=0.185  Sum_probs=61.2

Q ss_pred             ecCCCCChHHHHHHHHHcC------------------------------------CCeEEEEcccCCCCCC-CCceeEEE
Q 017068           10 SFAPRDSHKAQIQFALERG------------------------------------IPAFVAMLGTRRLPFP-AFSFDIVH   52 (378)
Q Consensus        10 s~ap~D~se~~vq~A~erg------------------------------------~~~~~~v~dae~LPfp-d~SFD~V~   52 (378)
                      .|-..|+|+.+++.|++..                                    -.+.|..+|....||+ ++.||+|+
T Consensus       139 ~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~  218 (274)
T 1af7_A          139 KVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIF  218 (274)
T ss_dssp             EEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEE
T ss_pred             EEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEE
Confidence            3445566689999998741                                    1356778888777787 68999999


Q ss_pred             ecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           53 CSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        53 cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |..+++|+.++. .++++++.++|||||+|++...
T Consensus       219 crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~s  253 (274)
T 1af7_A          219 CRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS  253 (274)
T ss_dssp             ECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             ECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            999999986652 5899999999999999998543

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.36  E-value=9.6e-08  Score=84.68  Aligned_cols=127  Identities=13%  Similarity=0.133  Sum_probs=80.4

Q ss_pred             eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhh----cc--ccc-cccccccCCCCCCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GL--IGV-YHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig~-~~~w~~~f~typrtyDliH~~~~  295 (378)
                      .+|||+|||+|.++..|...  ..   +|+-.|.+ ..+..+-++    |+  +-+ ..|+.+ ++ .+.+||+|.|...
T Consensus        67 ~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~D~i~~~~~  141 (207)
T 1jsx_A           67 ERFIDVGTGPGLPGIPLSIVRPEA---HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEE-FP-SEPPFDGVISRAF  141 (207)
T ss_dssp             SEEEEETCTTTTTHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTT-SC-CCSCEEEEECSCS
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhh-CC-ccCCcCEEEEecc
Confidence            47999999999999888743  33   45666655 555555443    44  222 233433 22 2368999997432


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEec--CCCCCCCCeEEEEEEec
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHD--KEPGSNGREKILVATKS  372 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~~--~~~~~~~~e~~l~~~K~  372 (378)
                                   ..+..++-++-|+|+|||++++......-++++++.+  .|+.....  .-+...+...+++++|+
T Consensus       142 -------------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k~  205 (207)
T 1jsx_A          142 -------------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKAN  205 (207)
T ss_dssp             -------------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred             -------------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEec
Confidence                         1245789999999999999999865555566666655  67764311  11222356777777774

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.36  E-value=4.7e-07  Score=84.56  Aligned_cols=69  Identities=14%  Similarity=0.132  Sum_probs=56.6

Q ss_pred             CChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccC-ChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~-~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |+|+.+++.|+++    +.  .+.+..+|.+.+|   ++||+|+|..+++|+.+ ....+++++.|+|||||.++++.+
T Consensus        94 d~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  169 (287)
T 1kpg_A           94 TLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  169 (287)
T ss_dssp             ESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             ECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            4457899988886    33  4677888887776   89999999999999953 334899999999999999999865

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.35  E-value=5.7e-08  Score=87.81  Aligned_cols=96  Identities=17%  Similarity=0.224  Sum_probs=67.7

Q ss_pred             eeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhhc-----cccccccccccCCCCCCccccccccCcc
Q 017068          225 IRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDRG-----LIGVYHDWCEPFSTYPRTYDLIHVSGIE  296 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eRG-----lig~~~~w~~~f~typrtyDliH~~~~~  296 (378)
                      =..|||+|||+|.++..|...  ..   +|+-.|.+ .+++.+-++-     +--+..|..+ ++ ++.+||+|.|..++
T Consensus        45 ~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~l  119 (234)
T 3dtn_A           45 NPDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSK-YD-FEEKYDMVVSALSI  119 (234)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTT-CC-CCSCEEEEEEESCG
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCCCEEEEeCchhc-cC-CCCCceEEEEeCcc
Confidence            368999999999999988765  44   55666765 7777766662     2112233322 22 33899999999888


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ..+.      + -....+|-|+-|+|+|||.+++.+
T Consensus       120 ~~~~------~-~~~~~~l~~~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          120 HHLE------D-EDKKELYKRSYSILKESGIFINAD  148 (234)
T ss_dssp             GGSC------H-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCC------H-HHHHHHHHHHHHhcCCCcEEEEEE
Confidence            8664      1 111248999999999999999975

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.35  E-value=8.3e-08  Score=86.48  Aligned_cols=111  Identities=13%  Similarity=0.151  Sum_probs=79.4

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccccccccccccCCCCCCccccccccCccccccCCCC
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGS  304 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~  304 (378)
                      .+|||+|||+|.++..|...       +-.|.+ ..+..+-++++--...|. +.++.-+.+||+|.|..++....    
T Consensus        49 ~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~----  116 (219)
T 1vlm_A           49 GRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGVFVLKGTA-ENLPLKDESFDFALMVTTICFVD----  116 (219)
T ss_dssp             SCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTCEEEECBT-TBCCSCTTCEEEEEEESCGGGSS----
T ss_pred             CcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcCCEEEEccc-ccCCCCCCCeeEEEEcchHhhcc----
Confidence            58999999999999999877       333444 777777777553223333 22332237999999998887653    


Q ss_pred             CCCCCCccceeeeecccccCCCeEEEeCCH------------------------HHHHHHHHHHhcCCceEEE
Q 017068          305 NKNSCSLVDLMVEMDRMLRPEGTVVVRDSP------------------------EVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       305 ~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~------------------------~~~~~~~~~~~~l~W~~~~  353 (378)
                           +...+|-++-|+|+|||++++.+..                        -..+++.++++..-++...
T Consensus       117 -----~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~  184 (219)
T 1vlm_A          117 -----DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK  184 (219)
T ss_dssp             -----CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred             -----CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEE
Confidence                 2367999999999999999997321                        1346777888887887654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.35  E-value=9.9e-08  Score=87.11  Aligned_cols=71  Identities=17%  Similarity=0.099  Sum_probs=55.1

Q ss_pred             CCChHHHHHHHHHcC----CCeEEEEcccCCC--CCCCCceeEEEe-cCccccccCC----hHHHHHHHhhcccCCcEEE
Q 017068           14 RDSHKAQIQFALERG----IPAFVAMLGTRRL--PFPAFSFDIVHC-SRCLIPFTAY----NATYLIEVDRLLRPGGYLV   82 (378)
Q Consensus        14 ~D~se~~vq~A~erg----~~~~~~v~dae~L--Pfpd~SFD~V~c-s~~l~hw~~~----~~~~L~Ev~RVLkPGG~lv   82 (378)
                      .|.|+.|++.|+++.    ..+.+..+|++.+  ||++++||+|+| .+.+ +....    ...+++|+.|+|||||+|+
T Consensus        89 vD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~  167 (236)
T 1zx0_A           89 IECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLT  167 (236)
T ss_dssp             EECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEE
T ss_pred             EcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEE
Confidence            455679999998863    4567888898888  999999999999 6654 33222    1266999999999999999


Q ss_pred             EEc
Q 017068           83 ISG   85 (378)
Q Consensus        83 is~   85 (378)
                      +..
T Consensus       168 ~~~  170 (236)
T 1zx0_A          168 YCN  170 (236)
T ss_dssp             ECC
T ss_pred             EEe
Confidence            864

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.35  E-value=1.9e-07  Score=86.80  Aligned_cols=77  Identities=19%  Similarity=0.243  Sum_probs=60.4

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCCCC-CCCceeEEEecCccccc--c-CChHHHHHHHhhc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPF-PAFSFDIVHCSRCLIPF--T-AYNATYLIEVDRL   74 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~LPf-pd~SFD~V~cs~~l~hw--~-~~~~~~L~Ev~RV   74 (378)
                      .|+++++     |+.+++.|+++    +.  .+.+..+|+..+|+ ++++||+|+|..+++|.  . .....+++++.|+
T Consensus        89 ~v~gvD~-----s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~  163 (298)
T 1ri5_A           89 EYYGVDI-----AEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARH  163 (298)
T ss_dssp             EEEEEES-----CHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHT
T ss_pred             EEEEEEC-----CHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHh
Confidence            4555554     46888888876    22  35788899999999 69999999999988662  1 1224899999999


Q ss_pred             ccCCcEEEEEcC
Q 017068           75 LRPGGYLVISGP   86 (378)
Q Consensus        75 LkPGG~lvis~p   86 (378)
                      |||||+++++.+
T Consensus       164 LkpgG~l~~~~~  175 (298)
T 1ri5_A          164 LRPGGYFIMTVP  175 (298)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             cCCCCEEEEEEC
Confidence            999999999886

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.35  E-value=4.8e-07  Score=80.78  Aligned_cols=88  Identities=18%  Similarity=0.321  Sum_probs=63.9

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEE
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVI   83 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvi   83 (378)
                      ..|+++++++.               .+.+..+|++.+|+++++||+|+|..++ |+.+.. .+++++.|+|||||++++
T Consensus        87 ~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~~~~~-~~l~~~~~~L~~gG~l~i  149 (215)
T 2zfu_A           87 NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLSL-MGTNIR-DFLEEANRVLKPGGLLKV  149 (215)
T ss_dssp             SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESCC-CSSCHH-HHHHHHHHHEEEEEEEEE
T ss_pred             ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehhc-cccCHH-HHHHHHHHhCCCCeEEEE
Confidence            46778888775               2346678889999999999999999988 455544 999999999999999999


Q ss_pred             EcCCCCCCccchHHHHHHHHHHHhceeee
Q 017068           84 SGPPVQWPKQDKEWADLQAVARALCYELI  112 (378)
Q Consensus        84 s~pp~~~~~~~~~w~~l~~l~~~lcw~~~  112 (378)
                      +.+.....    .-..+..+.+...++.+
T Consensus       150 ~~~~~~~~----~~~~~~~~l~~~Gf~~~  174 (215)
T 2zfu_A          150 AEVSSRFE----DVRTFLRAVTKLGFKIV  174 (215)
T ss_dssp             EECGGGCS----CHHHHHHHHHHTTEEEE
T ss_pred             EEcCCCCC----CHHHHHHHHHHCCCEEE
Confidence            86522111    12345555555555544

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.34  E-value=1.1e-07  Score=88.86  Aligned_cols=54  Identities=22%  Similarity=0.155  Sum_probs=43.3

Q ss_pred             EEEcccCC-CCCC---CCceeEEEecCccccccCC---hHHHHHHHhhcccCCcEEEEEcC
Q 017068           33 VAMLGTRR-LPFP---AFSFDIVHCSRCLIPFTAY---NATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        33 ~~v~dae~-LPfp---d~SFD~V~cs~~l~hw~~~---~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +..+|... .|++   +++||+|+|+.+++|...+   ...+++++.|+|||||+|+++..
T Consensus       138 ~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~  198 (263)
T 2a14_A          138 VLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT  198 (263)
T ss_dssp             EEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             EEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            66778766 4654   7899999999999886322   14899999999999999999864

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.34  E-value=3.7e-07  Score=86.23  Aligned_cols=76  Identities=16%  Similarity=0.107  Sum_probs=61.1

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC--------CCeEEEEcccCCCCCCCCceeEEEecCccccccCC--hHHHHHHHhhc
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG--------IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY--NATYLIEVDRL   74 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg--------~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~--~~~~L~Ev~RV   74 (378)
                      .|++++++     +.+++.|+++.        ..+.+.++|...+|+ +++||+|+|+..+.|+.++  ...+++++.|+
T Consensus       106 ~v~gvD~s-----~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~  179 (299)
T 3g2m_A          106 EVTALELS-----TSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREH  179 (299)
T ss_dssp             CEEEEESC-----HHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEEECC-----HHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHH
Confidence            45666555     68898888762        347889999999998 7899999988666676653  25899999999


Q ss_pred             ccCCcEEEEEcC
Q 017068           75 LRPGGYLVISGP   86 (378)
Q Consensus        75 LkPGG~lvis~p   86 (378)
                      |||||+|+++.+
T Consensus       180 L~pgG~l~~~~~  191 (299)
T 3g2m_A          180 LEPGGKFLLSLA  191 (299)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             cCCCcEEEEEee
Confidence            999999999876

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.34  E-value=1.1e-07  Score=85.06  Aligned_cols=118  Identities=18%  Similarity=0.236  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc------ccccccc
Q 017068          203 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG------LIGVYHD  275 (378)
Q Consensus       203 ~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG------lig~~~~  275 (378)
                      ..+..+.....+.+...+..  -.+|||+|||.|.++..|....-   +++-.|.+ ..+..+-++.      +--+..|
T Consensus        19 ~~~~~~~~~~~~~l~~~~~~--~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d   93 (227)
T 1ve3_A           19 QEYRSRIETLEPLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGD   93 (227)
T ss_dssp             HHHHHHHHHHHHHHHHSCCS--CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             HHHHHHHHHHHHHHHHhcCC--CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECc
Confidence            34555555566655544544  35899999999999998876654   66666765 6666655542      1112333


Q ss_pred             ccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          276 WCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       276 w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      ..+ ++.-+.+||+|.|..++..+.       .-+...+|-++-|+|+|||.+++.+.
T Consensus        94 ~~~-~~~~~~~~D~v~~~~~~~~~~-------~~~~~~~l~~~~~~L~~gG~l~~~~~  143 (227)
T 1ve3_A           94 ARK-LSFEDKTFDYVIFIDSIVHFE-------PLELNQVFKEVRRVLKPSGKFIMYFT  143 (227)
T ss_dssp             TTS-CCSCTTCEEEEEEESCGGGCC-------HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhc-CCCCCCcEEEEEEcCchHhCC-------HHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            333 232237999999988744332       12346789999999999999999865

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.33  E-value=4.6e-08  Score=89.49  Aligned_cols=93  Identities=17%  Similarity=0.205  Sum_probs=67.2

Q ss_pred             eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh----cc---c-cccccccccCCCCCCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GL---I-GVYHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl---i-g~~~~w~~~f~typrtyDliH~~~~  295 (378)
                      ..|||+|||.|.++..|... +.   +|+-.|.+ .++..+-++    |+   + -+..|. +.++.-+.+||+|+|..+
T Consensus        48 ~~vLDiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~  123 (257)
T 3f4k_A           48 AKIADIGCGTGGQTLFLADYVKG---QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM-DNLPFQNEELDLIWSEGA  123 (257)
T ss_dssp             CEEEEETCTTSHHHHHHHHHCCS---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCSSCTTCEEEEEEESC
T ss_pred             CeEEEeCCCCCHHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh-hhCCCCCCCEEEEEecCh
Confidence            48999999999999988755 32   55666655 667665544    43   1 123344 334433489999999988


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      +...          +...+|-|+-|+|||||++++.+
T Consensus       124 l~~~----------~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          124 IYNI----------GFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             SCCC----------CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             Hhhc----------CHHHHHHHHHHHcCCCcEEEEEE
Confidence            7643          34679999999999999999985

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.33  E-value=2.7e-07  Score=82.09  Aligned_cols=141  Identities=15%  Similarity=0.137  Sum_probs=89.6

Q ss_pred             ccCccccccchHHHHHHHHHHH-HHhhhhcCCCCeeEEEecCCcceeeeeeccCCC--eeEEEeccCCCC-cchHHHHhh
Q 017068          192 KNGYDVFEADSRRWRRRVAYYK-NTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDP--VWVMNVVPARKS-STLSVIYDR  267 (378)
Q Consensus       192 g~~~~~F~~d~~~w~~~v~~Y~-~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~--vwvmnv~p~~~~-~~l~~i~eR  267 (378)
                      |+..+.|..++..=++.+.... ..+.  +..  -.+|||+|||+|.++..|....  .   .|+-.|.+ ..+..+-++
T Consensus        11 g~~d~~f~~~g~~~~~~i~~~~l~~l~--~~~--~~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~   83 (204)
T 3e05_A           11 IDDDEFATAKKLITKQEVRAVTLSKLR--LQD--DLVMWDIGAGSASVSIEASNLMPNG---RIFALERNPQYLGFIRDN   83 (204)
T ss_dssp             CCGGGSCCCTTTSCCHHHHHHHHHHTT--CCT--TCEEEEETCTTCHHHHHHHHHCTTS---EEEEEECCHHHHHHHHHH
T ss_pred             CCCcHHhccCCcCChHHHHHHHHHHcC--CCC--CCEEEEECCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHH
Confidence            4445556665444333443222 2222  333  3589999999999999887553  3   45666655 666665554


Q ss_pred             ----cc--cc-ccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC-CHHHHHH
Q 017068          268 ----GL--IG-VYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDK  339 (378)
Q Consensus       268 ----Gl--ig-~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-~~~~~~~  339 (378)
                          |+  +- +..|..+.++. ..+||+|.++..+.            .+..++-++-|+|+|||.+++.. ..+..++
T Consensus        84 ~~~~~~~~v~~~~~d~~~~~~~-~~~~D~i~~~~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  150 (204)
T 3e05_A           84 LKKFVARNVTLVEAFAPEGLDD-LPDPDRVFIGGSGG------------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTK  150 (204)
T ss_dssp             HHHHTCTTEEEEECCTTTTCTT-SCCCSEEEESCCTT------------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHH
T ss_pred             HHHhCCCcEEEEeCChhhhhhc-CCCCCEEEECCCCc------------CHHHHHHHHHHhcCCCeEEEEEecccccHHH
Confidence                43  11 22344343332 26799998865443            34679999999999999999985 4567778


Q ss_pred             HHHHHhcCCceEE
Q 017068          340 VSRIANTVRWTAA  352 (378)
Q Consensus       340 ~~~~~~~l~W~~~  352 (378)
                      +.++++...|+..
T Consensus       151 ~~~~l~~~g~~~~  163 (204)
T 3e05_A          151 AVEFLEDHGYMVE  163 (204)
T ss_dssp             HHHHHHHTTCEEE
T ss_pred             HHHHHHHCCCcee
Confidence            8888888877644

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.33  E-value=7.1e-08  Score=89.37  Aligned_cols=115  Identities=16%  Similarity=0.173  Sum_probs=79.1

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCCCCCCccccccccCc
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~typrtyDliH~~~~  295 (378)
                      -..|||+|||.|.++..|...+-  .+|+-.|.+ .++..+-++    |+   +- +..|. +.++.-+.+||+|+|..+
T Consensus        47 ~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~i~~~~~  123 (267)
T 3kkz_A           47 KSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM-DDLPFRNEELDLIWSEGA  123 (267)
T ss_dssp             TCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCCCCTTCEEEEEESSC
T ss_pred             CCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh-hhCCCCCCCEEEEEEcCC
Confidence            35899999999999999987732  145566655 667666554    33   21 23344 334433479999999988


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH-----------H----------HHHHHHHHHhcCCceEE
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-----------E----------VIDKVSRIANTVRWTAA  352 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-----------~----------~~~~~~~~~~~l~W~~~  352 (378)
                      +...          +...+|-++-|+|||||++++.+..           .          ....+.+++++--++..
T Consensus       124 ~~~~----------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v  191 (267)
T 3kkz_A          124 IYNI----------GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPV  191 (267)
T ss_dssp             GGGT----------CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEE
T ss_pred             ceec----------CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEE
Confidence            8643          2467899999999999999997521           1          23456666777777665

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.32  E-value=7.5e-08  Score=87.98  Aligned_cols=95  Identities=15%  Similarity=0.122  Sum_probs=68.2

Q ss_pred             CeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhhcc-cc-ccccccccCCCCCCccccccccCcccc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDRGL-IG-VYHDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eRGl-ig-~~~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      .-.+|||+|||+|.++..|...  ..   +|+-.|.+ .++..+-++.- +- ...|. +.++ .+.+||+|+|..++..
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~  107 (259)
T 2p35_A           33 RVLNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADRLPNTNFGKADL-ATWK-PAQKADLLYANAVFQW  107 (259)
T ss_dssp             CCSSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHHSTTSEEEECCT-TTCC-CSSCEEEEEEESCGGG
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhCCCcEEEECCh-hhcC-ccCCcCEEEEeCchhh
Confidence            3468999999999999888755  33   34555655 77777776621 11 22233 2344 3589999999988876


Q ss_pred             ccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ..         +...+|-|+-|+|+|||++++..
T Consensus       108 ~~---------~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A          108 VP---------DHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             ST---------THHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CC---------CHHHHHHHHHHhcCCCeEEEEEe
Confidence            53         34678999999999999999974

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.32  E-value=7.9e-08  Score=86.48  Aligned_cols=117  Identities=8%  Similarity=0.020  Sum_probs=78.2

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc-c-----------------cc-ccccccccCCCCC-
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG-L-----------------IG-VYHDWCEPFSTYP-  284 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG-l-----------------ig-~~~~w~~~f~typ-  284 (378)
                      ..|||+|||+|.++..|.++..   .|+-.|.+ .+|..+-+|- .                 +- ...|-. .++..+ 
T Consensus        24 ~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~-~l~~~~~   99 (203)
T 1pjz_A           24 ARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF-ALTARDI   99 (203)
T ss_dssp             CEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS-SSTHHHH
T ss_pred             CEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccc-cCCcccC
Confidence            4799999999999999988765   67888866 8888887762 1                 11 112222 122222 


Q ss_pred             CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeE-EE-eCCH----------HHHHHHHHHHhcCCceEE
Q 017068          285 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTV-VV-RDSP----------EVIDKVSRIANTVRWTAA  352 (378)
Q Consensus       285 rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~-ii-~d~~----------~~~~~~~~~~~~l~W~~~  352 (378)
                      .+||+|-+..+|..+.       ......++-||-|+|||||.+ ++ .+..          -..++++++.+. .|++.
T Consensus       100 ~~fD~v~~~~~l~~l~-------~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~  171 (203)
T 1pjz_A          100 GHCAAFYDRAAMIALP-------ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVT  171 (203)
T ss_dssp             HSEEEEEEESCGGGSC-------HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEE
T ss_pred             CCEEEEEECcchhhCC-------HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEE
Confidence            6899999988887653       122346889999999999983 33 2210          135677887777 78876


Q ss_pred             Ee
Q 017068          353 VH  354 (378)
Q Consensus       353 ~~  354 (378)
                      ..
T Consensus       172 ~~  173 (203)
T 1pjz_A          172 KV  173 (203)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.32  E-value=3.3e-07  Score=84.79  Aligned_cols=64  Identities=27%  Similarity=0.418  Sum_probs=55.9

Q ss_pred             CChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.|+.+++.|++++..+.+..+|++.+|+++++||+|+|..+.        ..++|+.|+|||||.+++..+
T Consensus       116 D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~--------~~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          116 DVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP--------CKAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             ESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC--------CCHHHHHHHEEEEEEEEEEEE
T ss_pred             eCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh--------hhHHHHHHhcCCCcEEEEEEc
Confidence            4557999999999877888999999999999999999986642        458999999999999999876

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.31  E-value=1.6e-07  Score=83.50  Aligned_cols=93  Identities=19%  Similarity=0.191  Sum_probs=66.0

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc--cccccccccccCCCCCCccccccccCccccccC
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG--LIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKN  301 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~w~~~f~typrtyDliH~~~~~~~~~~  301 (378)
                      -.+|||+|||.|.++..| ..    -+++-.|.+ ..+..+-++.  +--+..|.. .++.-+.+||+|.|..++.... 
T Consensus        37 ~~~vLdiG~G~G~~~~~l-~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~~~-  109 (211)
T 2gs9_A           37 GESLLEVGAGTGYWLRRL-PY----PQKVGVEPSEAMLAVGRRRAPEATWVRAWGE-ALPFPGESFDVVLLFTTLEFVE-  109 (211)
T ss_dssp             CSEEEEETCTTCHHHHHC-CC----SEEEEECCCHHHHHHHHHHCTTSEEECCCTT-SCCSCSSCEEEEEEESCTTTCS-
T ss_pred             CCeEEEECCCCCHhHHhC-CC----CeEEEEeCCHHHHHHHHHhCCCcEEEEcccc-cCCCCCCcEEEEEEcChhhhcC-
Confidence            458999999999999888 22    044666665 7777777663  221222322 2332247999999998887553 


Q ss_pred             CCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          302 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       302 ~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                              +...+|-|+-|+|+|||.+++..
T Consensus       110 --------~~~~~l~~~~~~L~pgG~l~i~~  132 (211)
T 2gs9_A          110 --------DVERVLLEARRVLRPGGALVVGV  132 (211)
T ss_dssp             --------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------CHHHHHHHHHHHcCCCCEEEEEe
Confidence                    34689999999999999999985

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.31  E-value=7e-08  Score=86.52  Aligned_cols=98  Identities=15%  Similarity=0.145  Sum_probs=66.8

Q ss_pred             eeEEEecCCcceeeeeeccCCC--eeEEEeccCCCC-cchHHHHhh----c--------cccccccccccCCCCCCcccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSDP--VWVMNVVPARKS-STLSVIYDR----G--------LIGVYHDWCEPFSTYPRTYDL  289 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~--vwvmnv~p~~~~-~~l~~i~eR----G--------lig~~~~w~~~f~typrtyDl  289 (378)
                      -..|||+|||+|.|+..|..+.  .   +|+-.|.+ ..+..+-++    |        +--...|. +..+..+.+||+
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~  105 (217)
T 3jwh_A           30 ARRVIDLGCGQGNLLKILLKDSFFE---QITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL-TYQDKRFHGYDA  105 (217)
T ss_dssp             CCEEEEETCTTCHHHHHHHHCTTCS---EEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT-TSCCGGGCSCSE
T ss_pred             CCEEEEeCCCCCHHHHHHHhhCCCC---EEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc-ccccccCCCcCE
Confidence            3589999999999999998642  3   55666655 777766665    1        21112222 112222279999


Q ss_pred             ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      |.|..++..+.       .-.+..+|-|+-|+|+|||.+++...
T Consensus       106 v~~~~~l~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~  142 (217)
T 3jwh_A          106 ATVIEVIEHLD-------LSRLGAFERVLFEFAQPKIVIVTTPN  142 (217)
T ss_dssp             EEEESCGGGCC-------HHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             EeeHHHHHcCC-------HHHHHHHHHHHHHHcCCCEEEEEccC
Confidence            99999988663       12335789999999999998888653

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.31  E-value=1.2e-07  Score=85.61  Aligned_cols=97  Identities=20%  Similarity=0.173  Sum_probs=68.9

Q ss_pred             CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc---cc-ccccccccCCCCCCccccccccCcccc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL---IG-VYHDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl---ig-~~~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      .-.+|||+|||.|.++..|...+.-  +|+-.|.+ ..+..+-++.-   +- ...|..+ ++.-+.+||+|.|..++..
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~  119 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPDTGITYERADLDK-LHLPQDSFDLAYSSLALHY  119 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCSSSEEEEECCGGG-CCCCTTCEEEEEEESCGGG
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhcccCCceEEEcChhh-ccCCCCCceEEEEeccccc
Confidence            3468999999999999999876431  44555655 67777766642   11 2233332 3332479999999988876


Q ss_pred             ccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      +.         +...+|-|+-|+|+|||.+++..
T Consensus       120 ~~---------~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          120 VE---------DVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             CS---------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cc---------hHHHHHHHHHHhcCcCcEEEEEe
Confidence            53         34688999999999999999964

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.31  E-value=9.6e-07  Score=83.43  Aligned_cols=74  Identities=15%  Similarity=0.180  Sum_probs=59.8

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCCh--------HHHHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN--------ATYLIE   70 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~--------~~~L~E   70 (378)
                      .|+++++     |+.|++.|+++    +++  +.+..+|...+   +++||+|+|..+++|+++++        ..++++
T Consensus        97 ~v~gvD~-----s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~  168 (302)
T 3hem_A           97 NVIGLTL-----SENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKK  168 (302)
T ss_dssp             EEEEEEC-----CHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHH
T ss_pred             EEEEEEC-----CHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcchHHhcCccccccchhHHHHHHHH
Confidence            4555555     56888888876    443  67888888776   89999999999999997751        489999


Q ss_pred             HhhcccCCcEEEEEcC
Q 017068           71 VDRLLRPGGYLVISGP   86 (378)
Q Consensus        71 v~RVLkPGG~lvis~p   86 (378)
                      +.|+|||||++++...
T Consensus       169 ~~~~LkpgG~l~i~~~  184 (302)
T 3hem_A          169 FYNLTPDDGRMLLHTI  184 (302)
T ss_dssp             HHHSSCTTCEEEEEEE
T ss_pred             HHHhcCCCcEEEEEEE
Confidence            9999999999999765

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.30  E-value=5.6e-07  Score=81.14  Aligned_cols=142  Identities=12%  Similarity=0.028  Sum_probs=88.3

Q ss_pred             eEEEecCCc-ceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh----cc-cc-ccccccccCCCCC-CccccccccCc
Q 017068          226 RNIMDMNAF-FGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GL-IG-VYHDWCEPFSTYP-RTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag-~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig-~~~~w~~~f~typ-rtyDliH~~~~  295 (378)
                      .+|||+||| +|.++..|... ..   +|+..|.. ..+..+-++    |+ +- +..|+. .+..++ .+||+|.|+-.
T Consensus        57 ~~vLDlG~G~~G~~~~~la~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~-~~~~~~~~~fD~I~~npp  132 (230)
T 3evz_A           57 EVALEIGTGHTAMMALMAEKFFNC---KVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG-IIKGVVEGTFDVIFSAPP  132 (230)
T ss_dssp             CEEEEECCTTTCHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSC-SSTTTCCSCEEEEEECCC
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCch-hhhhcccCceeEEEECCC
Confidence            579999999 99999888766 43   56677765 666555443    43 22 223331 123333 79999999855


Q ss_pred             cccccCCCCC----------CCCCCccceeeeecccccCCCeEEEe--CCHHHHHHHHHHHhcCCceEEEecCCCCCCCC
Q 017068          296 ESLIKNPGSN----------KNSCSLVDLMVEMDRMLRPEGTVVVR--DSPEVIDKVSRIANTVRWTAAVHDKEPGSNGR  363 (378)
Q Consensus       296 ~~~~~~~~~~----------~~~c~~~~~l~EmDRiLRPgG~~ii~--d~~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~  363 (378)
                      |....+....          .....+..++-++-|+|+|||.+++.  .......++.+.++...|++.......| ...
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g-~~~  211 (230)
T 3evz_A          133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVG-TRW  211 (230)
T ss_dssp             CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCC-C-C
T ss_pred             CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCC-CeE
Confidence            5432210000          01111356888999999999999884  3456778888888888998876544332 234


Q ss_pred             eEEEEEEec
Q 017068          364 EKILVATKS  372 (378)
Q Consensus       364 e~~l~~~K~  372 (378)
                      -.+|..+|.
T Consensus       212 ~~~l~f~~~  220 (230)
T 3evz_A          212 RHSLIFFKG  220 (230)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecc
Confidence            566666663

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.30  E-value=8.2e-08  Score=90.72  Aligned_cols=95  Identities=16%  Similarity=0.159  Sum_probs=66.6

Q ss_pred             EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc---------c-cccccccccCCCCCCccccccccCc
Q 017068          227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL---------I-GVYHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl---------i-g~~~~w~~~f~typrtyDliH~~~~  295 (378)
                      .|||+|||+|.++..|.....   +|+-.|.+ .++..+-++--         + -+..|..+ ++ ++.+||+|.|+..
T Consensus        85 ~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~~  159 (299)
T 3g2m_A           85 PVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA-FA-LDKRFGTVVISSG  159 (299)
T ss_dssp             CEEEETCTTTTTHHHHHTTTC---CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB-CC-CSCCEEEEEECHH
T ss_pred             cEEEEeccCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhc-CC-cCCCcCEEEECCc
Confidence            899999999999999998865   66777765 77776665521         1 12233333 33 3789999997644


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .-.+.      ..-....+|-|+-|+|||||.+++..
T Consensus       160 ~~~~~------~~~~~~~~l~~~~~~L~pgG~l~~~~  190 (299)
T 3g2m_A          160 SINEL------DEADRRGLYASVREHLEPGGKFLLSL  190 (299)
T ss_dssp             HHTTS------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccC------CHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            33232      12224678999999999999999974

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.29  E-value=7.8e-08  Score=90.85  Aligned_cols=93  Identities=11%  Similarity=0.109  Sum_probs=67.0

Q ss_pred             CeeEEEecCCcceeeeeecc---CCCeeEEEeccCCCC-cchHHHHhh-----cc---cc-ccccccccCCCCC------
Q 017068          224 AIRNIMDMNAFFGGFAAALT---SDPVWVMNVVPARKS-STLSVIYDR-----GL---IG-VYHDWCEPFSTYP------  284 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~---~~~vwvmnv~p~~~~-~~l~~i~eR-----Gl---ig-~~~~w~~~f~typ------  284 (378)
                      .-..|||+|||+|.++..|.   ....   +|+-.|.+ .++..+-++     |.   +- ...|..+ ++.-.      
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~~  111 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFE---QIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDD-FKFLGADSVDK  111 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCS---EEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTC-CGGGCTTTTTS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHh-CCccccccccC
Confidence            45789999999999999998   5555   56777765 777777665     32   11 1223322 22212      


Q ss_pred             CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEE
Q 017068          285 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV  330 (378)
Q Consensus       285 rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii  330 (378)
                      .+||+|+|..++...          +...+|-|+-|+|||||++++
T Consensus       112 ~~fD~V~~~~~l~~~----------~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          112 QKIDMITAVECAHWF----------DFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             SCEEEEEEESCGGGS----------CHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCeeEEeHhhHHHHh----------CHHHHHHHHHHhcCCCcEEEE
Confidence            699999999887632          457899999999999999998

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.29  E-value=4.9e-07  Score=83.87  Aligned_cols=132  Identities=13%  Similarity=0.144  Sum_probs=82.9

Q ss_pred             eeEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----ccc---c-ccccccccCCCCC--Cccccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GLI---G-VYHDWCEPFSTYP--RTYDLI  290 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gli---g-~~~~w~~~f~typ--rtyDli  290 (378)
                      -++|||+|||+|.++.+|...   ..   .|+..|.+ ..+..+-++    |+-   - ...|..+.++..+  .+||+|
T Consensus        64 ~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V  140 (248)
T 3tfw_A           64 AKRILEIGTLGGYSTIWMARELPADG---QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI  140 (248)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred             CCEEEEecCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence            468999999999999988765   44   45666655 666655544    542   1 2334433334433  489999


Q ss_pred             cccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH------------HH---HHHH-HHHHhcCCceEEEe
Q 017068          291 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP------------EV---IDKV-SRIANTVRWTAAVH  354 (378)
Q Consensus       291 H~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~------------~~---~~~~-~~~~~~l~W~~~~~  354 (378)
                      .++.....            ...++-++-|+|||||++++.+..            ..   +.++ +.+...-+|+....
T Consensus       141 ~~d~~~~~------------~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  208 (248)
T 3tfw_A          141 FIDADKPN------------NPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATAL  208 (248)
T ss_dssp             EECSCGGG------------HHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             EECCchHH------------HHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEe
Confidence            98643322            245788889999999999997531            11   2222 33455567777654


Q ss_pred             cCCCCCCCCeEEEEEEec
Q 017068          355 DKEPGSNGREKILVATKS  372 (378)
Q Consensus       355 ~~~~~~~~~e~~l~~~K~  372 (378)
                      ..- |..+.+++.+++|+
T Consensus       209 ~~~-g~~~~DG~~i~~~~  225 (248)
T 3tfw_A          209 QTV-GTKGWDGFTLAWVN  225 (248)
T ss_dssp             EEC-STTCSEEEEEEEEC
T ss_pred             ecC-CCCCCCeeEEEEEe
Confidence            111 22346889999885

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.29  E-value=1.3e-07  Score=89.30  Aligned_cols=101  Identities=9%  Similarity=0.144  Sum_probs=66.2

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccC----CCeeEEEeccCCCC-cchHHHHhh----ccccccccccccCCCCC-Ccccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTS----DPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYP-RTYDL  289 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~----~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~w~~~f~typ-rtyDl  289 (378)
                      ++.|.  +|||+|||+|.++.+|..    .+.   +|+-.|.+ .+|+.+-+|    |+..-..-.|.-+..+| ..||+
T Consensus        68 ~~~~~--~vLDlGcGtG~~~~~la~~~~~~~~---~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~  142 (261)
T 4gek_A           68 VQPGT--QVYDLGCSLGAATLSVRRNIHHDNC---KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASM  142 (261)
T ss_dssp             CCTTC--EEEEETCTTTHHHHHHHHTCCSSSC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEE
T ss_pred             CCCCC--EEEEEeCCCCHHHHHHHHhcCCCCC---EEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccccccc
Confidence            44443  699999999999877753    344   56777866 888777655    43211111111112223 56999


Q ss_pred             ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      |.+..++..+.       .-....+|-||-|+|||||.+|+.|
T Consensus       143 v~~~~~l~~~~-------~~~~~~~l~~i~~~LkpGG~lii~e  178 (261)
T 4gek_A          143 VVLNFTLQFLE-------PSERQALLDKIYQGLNPGGALVLSE  178 (261)
T ss_dssp             EEEESCGGGSC-------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceeeeeeeecC-------chhHhHHHHHHHHHcCCCcEEEEEe
Confidence            99987776542       1112458999999999999999986

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.29  E-value=4.2e-07  Score=83.11  Aligned_cols=55  Identities=25%  Similarity=0.346  Sum_probs=44.4

Q ss_pred             EEEEcccCCC-CCCC---CceeEEEecCccccccCC---hHHHHHHHhhcccCCcEEEEEcC
Q 017068           32 FVAMLGTRRL-PFPA---FSFDIVHCSRCLIPFTAY---NATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        32 ~~~v~dae~L-Pfpd---~SFD~V~cs~~l~hw~~~---~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .+..+|...+ |+++   ++||+|+|..+++|....   ...+++++.|+|||||+|+++..
T Consensus       138 ~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  199 (265)
T 2i62_A          138 QVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA  199 (265)
T ss_dssp             EEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             eEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence            6778888776 4467   899999999999844332   23899999999999999999764

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.28  E-value=6.1e-07  Score=80.96  Aligned_cols=71  Identities=20%  Similarity=0.186  Sum_probs=57.7

Q ss_pred             CChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecC-ccccccCCh--HHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSR-CLIPFTAYN--ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~-~l~hw~~~~--~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.|+.+++.|+++    +..+.+..+|...+|++ ++||+|+|.. +++|+.+..  ..+++++.|+|||||+++++.+
T Consensus        61 D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  138 (243)
T 3d2l_A           61 DLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVH  138 (243)
T ss_dssp             ESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence            4456888888775    44678888999899987 8999999986 888874432  4889999999999999999765

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.27  E-value=1.2e-06  Score=81.95  Aligned_cols=75  Identities=12%  Similarity=0.232  Sum_probs=60.2

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG   79 (378)
                      .|+++++     |+.+++.|+++    ++.+.+..+|+..+++ +++||+|+|..+++|+.++. ..+++++.|+|||||
T Consensus       144 ~v~~vD~-----s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  217 (286)
T 3m70_A          144 DVTSWDH-----NENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGG  217 (286)
T ss_dssp             EEEEEES-----CHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEE
T ss_pred             eEEEEEC-----CHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCc
Confidence            4555555     46778777765    5578888999999888 89999999999998886543 589999999999999


Q ss_pred             EEEEEc
Q 017068           80 YLVISG   85 (378)
Q Consensus        80 ~lvis~   85 (378)
                      ++++..
T Consensus       218 ~l~i~~  223 (286)
T 3m70_A          218 YNLIVA  223 (286)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            987753

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.26  E-value=1e-06  Score=75.45  Aligned_cols=109  Identities=9%  Similarity=0.100  Sum_probs=79.2

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc--c-cccccccccCCCCCCccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL--I-GVYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--i-g~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      .+|||+|||.|.++..|.....   +|+-.|.+ ..+..+.++    |+  + -...|+.++++.  .+||+|.+...  
T Consensus        37 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~~D~i~~~~~--  109 (183)
T 2yxd_A           37 DVVVDVGCGSGGMTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDK--LEFNKAFIGGT--  109 (183)
T ss_dssp             CEEEEESCCCSHHHHHHHTTSS---EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGG--CCCSEEEECSC--
T ss_pred             CEEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccC--CCCcEEEECCc--
Confidence            4899999999999999988554   56666655 666655554    33  2 123455554443  68999999765  


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEeC-CHHHHHHHHHHHhcCCceEEEe
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVRWTAAVH  354 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-~~~~~~~~~~~~~~l~W~~~~~  354 (378)
                                 ..+..++-++-|+  |||.+++.. ..+...++.+.++...|++...
T Consensus       110 -----------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  154 (183)
T 2yxd_A          110 -----------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV  154 (183)
T ss_dssp             -----------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             -----------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence                       2346788889898  999999987 5667788888888888887754

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.26  E-value=2.1e-07  Score=84.53  Aligned_cols=107  Identities=10%  Similarity=0.089  Sum_probs=73.1

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc--ccccccccccCCCC-CCccccccccCccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL--IGVYHDWCEPFSTY-PRTYDLIHVSGIESLIKN  301 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl--ig~~~~w~~~f~ty-prtyDliH~~~~~~~~~~  301 (378)
                      ..|||+|||+|.++..|.....   .|+-.|.+ .++..+-++.-  -=+..|+.+.+|.- +.+||+|.|..       
T Consensus        50 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~-------  119 (226)
T 3m33_A           50 TRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR-------  119 (226)
T ss_dssp             CEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-------
T ss_pred             CeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-------
Confidence            5799999999999999988765   66777766 78888877722  12345565555533 57999999851       


Q ss_pred             CCCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCce
Q 017068          302 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWT  350 (378)
Q Consensus       302 ~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~  350 (378)
                              +...+|-|+-|+|||||.++..........+.+.++...++
T Consensus       120 --------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~  160 (226)
T 3m33_A          120 --------GPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWD  160 (226)
T ss_dssp             --------CCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCE
T ss_pred             --------CHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCe
Confidence                    23578999999999999999443222233344444443333

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.26  E-value=5.3e-07  Score=82.02  Aligned_cols=129  Identities=16%  Similarity=0.219  Sum_probs=72.2

Q ss_pred             eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cch----HHHHhh-cccccccccccc--CCCCCCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STL----SVIYDR-GLIGVYHDWCEP--FSTYPRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l----~~i~eR-Glig~~~~w~~~--f~typrtyDliH~~~~  295 (378)
                      ..|||+|||+|.++..|.+.  .-   .|...|.+ .++    ..+-.+ ++.-+..|-.++  +.+++.+||+|.|+- 
T Consensus        59 ~~VLDlGcGtG~~~~~la~~~~~~---~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~-  134 (210)
T 1nt2_A           59 ERVLYLGAASGTTVSHLADIVDEG---IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI-  134 (210)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTTTS---EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC-
T ss_pred             CEEEEECCcCCHHHHHHHHHcCCC---EEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec-
Confidence            37999999999998877543  22   34566655 333    322222 122233444432  123458999999861 


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEeC---------CHHH-H-HHHHHHHhcCCceEEE-ecCCCCCCCC
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD---------SPEV-I-DKVSRIANTVRWTAAV-HDKEPGSNGR  363 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d---------~~~~-~-~~~~~~~~~l~W~~~~-~~~~~~~~~~  363 (378)
                       .         ..-....++-|+-|+|||||.+++.-         ..+. . +.++.+.+.  ++... .+.++ -...
T Consensus       135 -~---------~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~--f~~~~~~~~~p-~~~~  201 (210)
T 1nt2_A          135 -A---------QKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD--FKIVKHGSLMP-YHRD  201 (210)
T ss_dssp             -C---------STTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT--SEEEEEEECTT-TCTT
T ss_pred             -c---------ChhHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh--cEEeeeecCCC-CCCC
Confidence             1         11112345889999999999999962         1122 2 345555555  77654 34332 1223


Q ss_pred             eEEEEEEe
Q 017068          364 EKILVATK  371 (378)
Q Consensus       364 e~~l~~~K  371 (378)
                      .-+++++|
T Consensus       202 h~~~~~~~  209 (210)
T 1nt2_A          202 HIFIHAYR  209 (210)
T ss_dssp             EEEEEEEE
T ss_pred             cEEEEEEc
Confidence            44555554

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.25  E-value=2e-07  Score=82.29  Aligned_cols=140  Identities=14%  Similarity=0.090  Sum_probs=82.0

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc-----cccccccccccCCCCCCccccccccCccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG-----LIGVYHDWCEPFSTYPRTYDLIHVSGIESLI  299 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG-----lig~~~~w~~~f~typrtyDliH~~~~~~~~  299 (378)
                      .+|||+|||.|.++..|.....-  +|+-.|.+ ..+..+-++.     +--...|..+ ++.-+.+||+|.+..++...
T Consensus        44 ~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~~~~~  120 (215)
T 2pxx_A           44 DRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRK-LDFPSASFDVVLEKGTLDAL  120 (215)
T ss_dssp             CCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTS-CCSCSSCEEEEEEESHHHHH
T ss_pred             CeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhc-CCCCCCcccEEEECcchhhh
Confidence            47999999999999988766431  45556655 6666655542     2112233332 23223799999998887654


Q ss_pred             cCCCCCCC------CCCccceeeeecccccCCCeEEEeCCHHHHHHHHHH--HhcCCceEEEecCCCCCCCCeEEEEEEe
Q 017068          300 KNPGSNKN------SCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRI--ANTVRWTAAVHDKEPGSNGREKILVATK  371 (378)
Q Consensus       300 ~~~~~~~~------~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~--~~~l~W~~~~~~~~~~~~~~e~~l~~~K  371 (378)
                      .......+      ......+|-|+-|+|+|||.+++.+....- ....+  .....|+......+++  ..-.+.+++|
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  197 (215)
T 2pxx_A          121 LAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPH-FRTRHYAQAYYGWSLRHATYGSG--FHFHLYLMHK  197 (215)
T ss_dssp             TTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHH-HHHHHHCCGGGCEEEEEEEESGG--GCEEEEEEEE
T ss_pred             ccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcH-HHHHHHhccccCcEEEEEEecCc--ceEEEEEEEe
Confidence            21100000      113468899999999999999998753211 11222  3445787665433221  2233555554

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.25  E-value=8e-08  Score=87.73  Aligned_cols=100  Identities=12%  Similarity=0.088  Sum_probs=65.1

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-----cc-ccccccccCCCCC-Cccccccc-cCcc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-----IG-VYHDWCEPFSTYP-RTYDLIHV-SGIE  296 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-----ig-~~~~w~~~f~typ-rtyDliH~-~~~~  296 (378)
                      ..|||+|||+|.++..|.....-  +|+-.|.+ .++..+-++.-     +- +..|+.+..++++ .+||+|.+ ...+
T Consensus        62 ~~vLDiGcGtG~~~~~l~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~  139 (236)
T 1zx0_A           62 GRVLEVGFGMAIAASKVQEAPID--EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL  139 (236)
T ss_dssp             EEEEEECCTTSHHHHHHHTSCEE--EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred             CeEEEEeccCCHHHHHHHhcCCC--eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCccc
Confidence            57999999999999999775432  56777766 78877766541     11 1223333222334 79999998 3332


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                       ....    .+.-..+.++-|+-|+|||||.+++.+
T Consensus       140 -~~~~----~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          140 -SEET----WHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             -BGGG----TTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             -chhh----hhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence             1210    011122366899999999999999875

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.25  E-value=9.4e-07  Score=82.06  Aligned_cols=131  Identities=15%  Similarity=0.164  Sum_probs=81.6

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-ccc-----ccccc-ccCCCCCCccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-IGV-----YHDWC-EPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig~-----~~~w~-~~f~typrtyDliH~~~~~~  297 (378)
                      .+|||+|||+|+|+..|+..+.-  .|+-.|.+ ++|..+..+.- ++.     +...+ +.++.  ..||.+.++-+|+
T Consensus        39 ~~VLDiGcGtG~~t~~la~~g~~--~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v~~  114 (232)
T 3opn_A           39 KTCLDIGSSTGGFTDVMLQNGAK--LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVSFI  114 (232)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCS--EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCSSS
T ss_pred             CEEEEEccCCCHHHHHHHhcCCC--EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEEhh
Confidence            57999999999999999877531  56777765 78877655422 111     11111 22221  0134444444444


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEeC-------------------C---HHHHHHHHHHHhcCCceEEEec
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-------------------S---PEVIDKVSRIANTVRWTAAVHD  355 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-------------------~---~~~~~~~~~~~~~l~W~~~~~~  355 (378)
                      .+            ..+|-|+-|+|+|||.+++.-                   .   ....+++.++++..-|++...+
T Consensus       115 ~l------------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~  182 (232)
T 3opn_A          115 SL------------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLT  182 (232)
T ss_dssp             CG------------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             hH------------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEE
Confidence            32            579999999999999998851                   1   1245677788888888876543


Q ss_pred             CCC--CCC-CCeEEEEEEec
Q 017068          356 KEP--GSN-GREKILVATKS  372 (378)
Q Consensus       356 ~~~--~~~-~~e~~l~~~K~  372 (378)
                      ...  ++. +-|-++.++|.
T Consensus       183 ~~pi~g~~gn~e~l~~~~~~  202 (232)
T 3opn_A          183 FSPIKGGAGNVEFLVHLLKD  202 (232)
T ss_dssp             ECSSCBTTTBCCEEEEEEES
T ss_pred             EccCCCCCCCHHHHHHHhhc
Confidence            221  222 45677777773

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.24  E-value=8.2e-07  Score=77.60  Aligned_cols=134  Identities=10%  Similarity=0.023  Sum_probs=85.8

Q ss_pred             EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccccccccccccCCCCCCccccccccCccccccCCCCC
Q 017068          227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSN  305 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~  305 (378)
                      .|||+|||+|.++.+|..+.    +|+-.|.+ .++..  ...+--+..|..++++  +.+||+|.|+-.|....+...-
T Consensus        26 ~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--~~~~~~~~~d~~~~~~--~~~fD~i~~n~~~~~~~~~~~~   97 (170)
T 3q87_B           26 IVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--HRGGNLVRADLLCSIN--QESVDVVVFNPPYVPDTDDPII   97 (170)
T ss_dssp             EEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--CSSSCEEECSTTTTBC--GGGCSEEEECCCCBTTCCCTTT
T ss_pred             eEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--ccCCeEEECChhhhcc--cCCCCEEEECCCCccCCccccc
Confidence            89999999999999999887    77777766 66665  3333233445555433  2899999998766543211000


Q ss_pred             CCCCCccceeeeecccccCCCeEEEeCC-HHHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEEEEe
Q 017068          306 KNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATK  371 (378)
Q Consensus       306 ~~~c~~~~~l~EmDRiLRPgG~~ii~d~-~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K  371 (378)
                      ........++-++=|.| |||.+++... ....+++.++++...|+........  .+.|++++.+.
T Consensus        98 ~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~--~~~e~~~~~~~  161 (170)
T 3q87_B           98 GGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRK--ILGETVYIIKG  161 (170)
T ss_dssp             BCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEE--CSSSEEEEEEE
T ss_pred             cCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeec--cCCceEEEEEE
Confidence            01111234556666666 9999999753 4567788888888889876543321  24566666543

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.24  E-value=4.7e-07  Score=82.89  Aligned_cols=127  Identities=14%  Similarity=0.323  Sum_probs=80.8

Q ss_pred             eeEEEecCCcceeeeeeccC--CCeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCC-CCCCccccccc
Q 017068          225 IRNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFS-TYPRTYDLIHV  292 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~--~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~-typrtyDliH~  292 (378)
                      -++|||+|||+|.++..|..  ...   .|+..|.. ..+..+-++    |+   +- +..|..+.++ ..+.+||+|.+
T Consensus        72 ~~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  148 (232)
T 3ntv_A           72 VKNILEIGTAIGYSSMQFASISDDI---HVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI  148 (232)
T ss_dssp             CCEEEEECCSSSHHHHHHHTTCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred             CCEEEEEeCchhHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence            46899999999999999987  333   55666655 556554433    43   22 2334444444 34689999987


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-----------------HHHHHHHHH----HHhcCCceE
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-----------------PEVIDKVSR----IANTVRWTA  351 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-----------------~~~~~~~~~----~~~~l~W~~  351 (378)
                      +....            ....++-++-|+|||||.+++.+.                 ......+++    +...-++..
T Consensus       149 ~~~~~------------~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  216 (232)
T 3ntv_A          149 DAAKA------------QSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTT  216 (232)
T ss_dssp             ETTSS------------SHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred             cCcHH------------HHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEE
Confidence            63322            235688899999999999999431                 111223333    344557777


Q ss_pred             EEecCCCCCCCCeEEEEEEec
Q 017068          352 AVHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       352 ~~~~~~~~~~~~e~~l~~~K~  372 (378)
                      .....      .+++.+++|+
T Consensus       217 ~~lp~------~dG~~i~~k~  231 (232)
T 3ntv_A          217 NFLNI------DDGLAISIKG  231 (232)
T ss_dssp             EEECS------TTCEEEEEEC
T ss_pred             EEEEc------CCceEEEEEC
Confidence            66543      3568888874

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.23  E-value=4.7e-07  Score=86.13  Aligned_cols=72  Identities=22%  Similarity=0.328  Sum_probs=56.0

Q ss_pred             CChHHHHHHHHHcC------------CCeEEEEcccCCCC----CC--CCceeEEEecCccccc-cCC--hHHHHHHHhh
Q 017068           15 DSHKAQIQFALERG------------IPAFVAMLGTRRLP----FP--AFSFDIVHCSRCLIPF-TAY--NATYLIEVDR   73 (378)
Q Consensus        15 D~se~~vq~A~erg------------~~~~~~v~dae~LP----fp--d~SFD~V~cs~~l~hw-~~~--~~~~L~Ev~R   73 (378)
                      |+|+.+++.|+++.            ..+.+.++|.+.++    |+  +++||+|+|+.++++. .+.  ...+++++.|
T Consensus        64 D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~  143 (313)
T 3bgv_A           64 DIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACE  143 (313)
T ss_dssp             ESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHT
T ss_pred             eCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHH
Confidence            44568888888752            14678889998886    74  4599999999987655 232  2489999999


Q ss_pred             cccCCcEEEEEcC
Q 017068           74 LLRPGGYLVISGP   86 (378)
Q Consensus        74 VLkPGG~lvis~p   86 (378)
                      +|||||+|+++.+
T Consensus       144 ~LkpgG~li~~~~  156 (313)
T 3bgv_A          144 RLSPGGYFIGTTP  156 (313)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             HhCCCcEEEEecC
Confidence            9999999999876

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.23  E-value=3.8e-07  Score=85.53  Aligned_cols=139  Identities=13%  Similarity=0.210  Sum_probs=87.6

Q ss_pred             eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhh----cc--c-cccccccccCCCCCCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GL--I-GVYHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eR----Gl--i-g~~~~w~~~f~typrtyDliH~~~~  295 (378)
                      ..|||+|||+|.++.+|...  ..   +|+..|.+ ..+.++-++    |+  + -+..|+.+.++  +.+||+|.++-.
T Consensus       111 ~~vLDlG~GsG~~~~~la~~~~~~---~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~fD~Iv~npP  185 (276)
T 2b3t_A          111 CRILDLGTGTGAIALALASERPDC---EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA--GQQFAMIVSNPP  185 (276)
T ss_dssp             CEEEEETCTTSHHHHHHHHHCTTS---EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT--TCCEEEEEECCC
T ss_pred             CEEEEecCCccHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc--cCCccEEEECCC
Confidence            47999999999999888732  33   56777766 666665544    43  2 23445665543  478999999754


Q ss_pred             cccccC----CCC--CCCC----------CCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEecCCCC
Q 017068          296 ESLIKN----PGS--NKNS----------CSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPG  359 (378)
Q Consensus       296 ~~~~~~----~~~--~~~~----------c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~~~~~~  359 (378)
                      +.....    ++.  ....          -.+..++-++-|+|+|||++++.......++++++++...|+......+  
T Consensus       186 y~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d--  263 (276)
T 2b3t_A          186 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRD--  263 (276)
T ss_dssp             CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEEC--
T ss_pred             CCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEec--
Confidence            432210    000  0000          1224677889999999999999876555667777776666653221111  


Q ss_pred             CCCCeEEEEEEe
Q 017068          360 SNGREKILVATK  371 (378)
Q Consensus       360 ~~~~e~~l~~~K  371 (378)
                      -.+.+++++++|
T Consensus       264 ~~g~~r~~~~~~  275 (276)
T 2b3t_A          264 YGDNERVTLGRY  275 (276)
T ss_dssp             TTSSEEEEEEEC
T ss_pred             CCCCCcEEEEEE
Confidence            236889999875

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.22  E-value=1.4e-06  Score=82.83  Aligned_cols=69  Identities=10%  Similarity=0.090  Sum_probs=56.6

Q ss_pred             CChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccC-ChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~-~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |+|+.+++.|+++    ++  .+.+..+|.+.+|   ++||+|+|..+++|+.+ ....+++++.|+|||||++++..+
T Consensus       120 D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  195 (318)
T 2fk8_A          120 TLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS  195 (318)
T ss_dssp             ESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             ECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            4457899998886    43  3677888888775   88999999999999853 334899999999999999999876

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.21  E-value=2.7e-07  Score=84.24  Aligned_cols=96  Identities=19%  Similarity=0.253  Sum_probs=66.0

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc-cc-ccccccccCCCCCCccccccccCccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IG-VYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig-~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      -.+|||+|||+|.++..|.....   +|+..|.+ .++..+-++    |+ +- +..|..+ ++ .+.+||+|.|.....
T Consensus        42 ~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~~~~  116 (252)
T 1wzn_A           42 VRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE-IA-FKNEFDAVTMFFSTI  116 (252)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG-CC-CCSCEEEEEECSSGG
T ss_pred             CCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhh-cc-cCCCccEEEEcCCch
Confidence            46899999999999999988765   67777766 777666554    32 11 2233333 22 457899999863322


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      .+.      ..-....+|-++-|+|+|||.+++.
T Consensus       117 ~~~------~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A          117 MYF------DEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             GGS------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hcC------CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            222      1123467889999999999999985

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.20  E-value=1.5e-07  Score=83.20  Aligned_cols=96  Identities=13%  Similarity=0.101  Sum_probs=64.5

Q ss_pred             eEEEecCCcceeeee-eccCCCeeEEEeccCCCC-cchHHHHhh----cc-cc-ccccccccCCCCCCccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAA-ALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IG-VYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa-~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig-~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      .+|||+|||.|.+++ .+...+.   +|+-.|.+ ..+..+-++    |. +- ...|.. .++.-+.+||+|.|..++.
T Consensus        25 ~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~  100 (209)
T 2p8j_A           25 KTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDIR-KLPFKDESMSFVYSYGTIF  100 (209)
T ss_dssp             SEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTT-SCCSCTTCEEEEEECSCGG
T ss_pred             CEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECchh-hCCCCCCceeEEEEcChHH
Confidence            589999999999854 4444444   56777766 666665544    32 11 122332 2332247999999988776


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ++.       .-....+|-|+-|+|+|||.+++.+
T Consensus       101 ~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~  128 (209)
T 2p8j_A          101 HMR-------KNDVKEAIDEIKRVLKPGGLACINF  128 (209)
T ss_dssp             GSC-------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hCC-------HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            541       1234688999999999999999974

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.20  E-value=2.8e-07  Score=82.89  Aligned_cols=131  Identities=17%  Similarity=0.189  Sum_probs=79.4

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCCCCC----Ccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFSTYP----RTYDL  289 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~typ----rtyDl  289 (378)
                      .+|||+|||+|.++.+|...   ..   .|+..|.. ..+..+-++    |+   +- +..|..+.++..+    .+||+
T Consensus        60 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~  136 (223)
T 3duw_A           60 RNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF  136 (223)
T ss_dssp             SEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred             CEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence            68999999999999988765   33   45666654 555554433    44   21 1223333222221    57999


Q ss_pred             ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH------------HHHHHHHH----HHhcCCceEEE
Q 017068          290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP------------EVIDKVSR----IANTVRWTAAV  353 (378)
Q Consensus       290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~------------~~~~~~~~----~~~~l~W~~~~  353 (378)
                      |.++.....+            ..++-++-|+|||||.+++.+..            .....+++    +...=+++...
T Consensus       137 v~~d~~~~~~------------~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  204 (223)
T 3duw_A          137 IFIDADKQNN------------PAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATA  204 (223)
T ss_dssp             EEECSCGGGH------------HHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred             EEEcCCcHHH------------HHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEE
Confidence            9986543322            46788899999999999997531            11222333    34445666665


Q ss_pred             ecCCCCCCCCeEEEEEEec
Q 017068          354 HDKEPGSNGREKILVATKS  372 (378)
Q Consensus       354 ~~~~~~~~~~e~~l~~~K~  372 (378)
                      ...- +..+.+++++++|+
T Consensus       205 ~p~~-~~~~~dG~~~~~~~  222 (223)
T 3duw_A          205 LQTV-GSKGYDGFIMAVVK  222 (223)
T ss_dssp             EEEE-ETTEEEEEEEEEEC
T ss_pred             Eecc-CCCCCCeeEEEEEe
Confidence            4320 12356789988864

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.20  E-value=2.1e-07  Score=88.52  Aligned_cols=101  Identities=11%  Similarity=0.056  Sum_probs=67.3

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-------------cc-ccccccc-----cCCCCC
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-------------IG-VYHDWCE-----PFSTYP  284 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-------------ig-~~~~w~~-----~f~typ  284 (378)
                      -..|||+|||+|.++..|...+.  -+|+..|.+ .++..+-+|.-             +- +..|..+     +|+.-+
T Consensus        35 ~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           35 DITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             CCEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            35899999999999998886542  256667765 77766665521             11 2223222     132223


Q ss_pred             CccccccccCccccc-cCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          285 RTYDLIHVSGIESLI-KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       285 rtyDliH~~~~~~~~-~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      .+||+|.|..++... .      +.-....+|-|+-|+|+|||++++...
T Consensus       113 ~~fD~V~~~~~l~~~~~------~~~~~~~~l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFE------SYEQADMMLRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             CCEEEEEEETCGGGGGG------SHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CCEEEEEEecchhhccC------CHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            599999998877543 1      112235789999999999999999854

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.20  E-value=1.4e-07  Score=87.00  Aligned_cols=101  Identities=12%  Similarity=0.107  Sum_probs=67.6

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-----cc-ccccccccCCCCC-CccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-----IG-VYHDWCEPFSTYP-RTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-----ig-~~~~w~~~f~typ-rtyDliH~~~~~~  297 (378)
                      ..|||+|||.|.++.++.+...  =+++-.|.+ .+++.+-++.-     +- +..+|.+-.+.+| .+||.|..+...+
T Consensus        62 ~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~  139 (236)
T 3orh_A           62 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL  139 (236)
T ss_dssp             EEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred             CeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeeec
Confidence            4699999999999999987653  255666665 77777765542     11 2345544434444 7899998765544


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ...    ..+.-..+.++-|+-|+|||||.+++.+
T Consensus       140 ~~~----~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          140 SEE----TWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             BGG----GTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ccc----hhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            332    0112234578889999999999999864

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.19  E-value=1.9e-06  Score=81.83  Aligned_cols=57  Identities=19%  Similarity=0.144  Sum_probs=44.3

Q ss_pred             CeEEEEcccCCCC-----CCCCceeEEEecCcccccc----C-ChHHHHHHHhhcccCCcEEEEEcC
Q 017068           30 PAFVAMLGTRRLP-----FPAFSFDIVHCSRCLIPFT----A-YNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        30 ~~~~~v~dae~LP-----fpd~SFD~V~cs~~l~hw~----~-~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .+.+..+|....+     +++++||+|+|..+++|++    + ....+++++.|+|||||+|++...
T Consensus       155 ~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~  221 (292)
T 3g07_A          155 NVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQ  221 (292)
T ss_dssp             TEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            3667777765443     7899999999999886653    2 124899999999999999999754

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.19  E-value=1.8e-06  Score=81.76  Aligned_cols=77  Identities=10%  Similarity=0.018  Sum_probs=59.7

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC---CCeEEEEcccCCCC-----------CCCCceeEEEecCccccccCC-hHHHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLP-----------FPAFSFDIVHCSRCLIPFTAY-NATYLI   69 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg---~~~~~~v~dae~LP-----------fpd~SFD~V~cs~~l~hw~~~-~~~~L~   69 (378)
                      .|+++|++     +.|++.|+++.   ..+.+..+|....+           ++.++||+|++..+++|+++. ...+++
T Consensus       106 ~v~~vD~s-----p~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~  180 (274)
T 2qe6_A          106 RVVYVDID-----PMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVG  180 (274)
T ss_dssp             EEEEEESS-----HHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHH
T ss_pred             EEEEEECC-----hHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHH
Confidence            46666655     68999998862   34678888875421           344589999999999988874 358999


Q ss_pred             HHhhcccCCcEEEEEcC
Q 017068           70 EVDRLLRPGGYLVISGP   86 (378)
Q Consensus        70 Ev~RVLkPGG~lvis~p   86 (378)
                      |+.|+|||||+|+++..
T Consensus       181 ~~~~~L~pGG~l~i~~~  197 (274)
T 2qe6_A          181 AYRDALAPGSYLFMTSL  197 (274)
T ss_dssp             HHHHHSCTTCEEEEEEE
T ss_pred             HHHHhCCCCcEEEEEEe
Confidence            99999999999999875

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.19  E-value=1.3e-06  Score=81.17  Aligned_cols=126  Identities=16%  Similarity=0.141  Sum_probs=81.9

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCCCC-CCccccccccC
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFSTY-PRTYDLIHVSG  294 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~ty-prtyDliH~~~  294 (378)
                      -..|||+|||+|.++..|..+.-.  +|+-.|.. ..+..+-++    |+   +- +..|..+..+.+ +.+||+|.|+-
T Consensus        50 ~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np  127 (259)
T 3lpm_A           50 KGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP  127 (259)
T ss_dssp             CCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred             CCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence            358999999999999998876432  66777765 555554443    44   22 233444433334 47999999975


Q ss_pred             ccccc-----cCCC------CCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEE
Q 017068          295 IESLI-----KNPG------SNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAA  352 (378)
Q Consensus       295 ~~~~~-----~~~~------~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~  352 (378)
                      .|...     .+++      .....+.+..++-++-|+|+|||.+++--..+...++...++...|...
T Consensus       128 Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~  196 (259)
T 3lpm_A          128 PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPK  196 (259)
T ss_dssp             CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEE
T ss_pred             CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceE
Confidence            54322     0000      0011245668999999999999999997766777778888888788764

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.19  E-value=4.8e-07  Score=78.04  Aligned_cols=111  Identities=17%  Similarity=0.215  Sum_probs=76.9

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCCCCCCccccccccCcc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFSTYPRTYDLIHVSGIE  296 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~typrtyDliH~~~~~  296 (378)
                      .+|||+|||.|.++..|....   -+|+-.|.+ ..+..+-++    |+   +- ...|..+.++.. .+||+|.++..+
T Consensus        35 ~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~~~  110 (192)
T 1l3i_A           35 DVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI-PDIDIAVVGGSG  110 (192)
T ss_dssp             CEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS-CCEEEEEESCCT
T ss_pred             CEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC-CCCCEEEECCch
Confidence            589999999999999888776   356666665 566555442    33   11 223444433321 489999987655


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-HHHHHHHHHHHhcCCceEE
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWTAA  352 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-~~~~~~~~~~~~~l~W~~~  352 (378)
                      ..            +..++-++-|+|+|||.+++... .+...++.++++...|++.
T Consensus       111 ~~------------~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~  155 (192)
T 1l3i_A          111 GE------------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN  155 (192)
T ss_dssp             TC------------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred             HH------------HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceE
Confidence            32            35789999999999999999764 5667777777777666544

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.18  E-value=5.7e-07  Score=83.93  Aligned_cols=112  Identities=13%  Similarity=0.083  Sum_probs=78.9

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc-ccc-cccccccCCCCCCccccccccCcccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IGV-YHDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig~-~~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      .+|||+|||+|.++.++.....   +|+-.|.. ..+..+-++    |+ +-+ ..|..+.++  +.+||+|.|+..+..
T Consensus       122 ~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~--~~~fD~Vv~n~~~~~  196 (254)
T 2nxc_A          122 DKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALP--FGPFDLLVANLYAEL  196 (254)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGG--GCCEEEEEEECCHHH
T ss_pred             CEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCc--CCCCCEEEECCcHHH
Confidence            5899999999999988877654   66677754 666666554    43 222 223333332  368999998654432


Q ss_pred             ccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-HHHHHHHHHHHhcCCceEEEe
Q 017068          299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWTAAVH  354 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-~~~~~~~~~~~~~l~W~~~~~  354 (378)
                                  +..++-++-|+|+|||++++++. ....+.+.+.++..-++....
T Consensus       197 ------------~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~  241 (254)
T 2nxc_A          197 ------------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEE  241 (254)
T ss_dssp             ------------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred             ------------HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEE
Confidence                        25788999999999999999863 345677888888777887654

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.18  E-value=3.4e-07  Score=82.30  Aligned_cols=126  Identities=17%  Similarity=0.193  Sum_probs=78.3

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----ccc---cc-cccccccCCCCC-----Cccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GLI---GV-YHDWCEPFSTYP-----RTYD  288 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gli---g~-~~~w~~~f~typ-----rtyD  288 (378)
                      .+|||+|||+|.++..|...   ..   .|+..|.+ ..+..+-++    |+-   -+ ..|..+.++..+     .+||
T Consensus        66 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (225)
T 3tr6_A           66 KKVIDIGTFTGYSAIAMGLALPKDG---TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD  142 (225)
T ss_dssp             SEEEEECCTTSHHHHHHHTTCCTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred             CEEEEeCCcchHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence            48999999999999998765   44   45556654 555554443    442   11 223333333222     7899


Q ss_pred             cccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH------------HHHHHHHH----HHhcCCceEE
Q 017068          289 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP------------EVIDKVSR----IANTVRWTAA  352 (378)
Q Consensus       289 liH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~------------~~~~~~~~----~~~~l~W~~~  352 (378)
                      +|.++.....            ...++-++-|+|||||++++.+..            .....+++    +...-+|+..
T Consensus       143 ~v~~~~~~~~------------~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  210 (225)
T 3tr6_A          143 LIYIDADKAN------------TDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMI  210 (225)
T ss_dssp             EEEECSCGGG------------HHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEE
T ss_pred             EEEECCCHHH------------HHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEE
Confidence            9987543322            246778888999999999998631            11223333    3445567777


Q ss_pred             EecCCCCCCCCeEEEEEEec
Q 017068          353 VHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       353 ~~~~~~~~~~~e~~l~~~K~  372 (378)
                      ....      .+++++++|+
T Consensus       211 ~lp~------~dG~~~~~k~  224 (225)
T 3tr6_A          211 LIPI------GDGLTLARKK  224 (225)
T ss_dssp             EECS------TTCEEEEEEC
T ss_pred             EEEc------CCccEEEEEC
Confidence            6543      3468888875

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.17  E-value=2.8e-07  Score=86.56  Aligned_cols=120  Identities=11%  Similarity=0.086  Sum_probs=74.0

Q ss_pred             eeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh------------------cccc-------------
Q 017068          225 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR------------------GLIG-------------  271 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR------------------Glig-------------  271 (378)
                      -..|||+|||+|.++..+... ..   +|+-.|.+ .++..+-++                  .+.|             
T Consensus        72 ~~~vLDiGcG~G~~~~l~~~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  148 (289)
T 2g72_A           72 GRTLIDIGSGPTVYQLLSACSHFE---DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  148 (289)
T ss_dssp             CSEEEEETCTTCCGGGTTGGGGCS---EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCeEEEECCCcChHHHHhhccCCC---eEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence            358999999999954433332 22   56777766 677654442                  0112             


Q ss_pred             ------ccccccc--cCC--CCC-CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-------
Q 017068          272 ------VYHDWCE--PFS--TYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-------  333 (378)
Q Consensus       272 ------~~~~w~~--~f~--typ-rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-------  333 (378)
                            +..|..+  +|+  .+| .+||+|.|..+|....     ...-+...+|-|+-|+|||||++++.+.       
T Consensus       149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~-----~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~  223 (289)
T 2g72_A          149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS-----PDLASFQRALDHITTLLRPGGHLLLIGALEESWYL  223 (289)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC-----SSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEE
T ss_pred             hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhc-----CCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEE
Confidence                  1114433  222  133 6799999999887642     0011346899999999999999998631       


Q ss_pred             ---------HHHHHHHHHHHhcCCceEE
Q 017068          334 ---------PEVIDKVSRIANTVRWTAA  352 (378)
Q Consensus       334 ---------~~~~~~~~~~~~~l~W~~~  352 (378)
                               .-..+++.++++.--++..
T Consensus       224 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~  251 (289)
T 2g72_A          224 AGEARLTVVPVSEEEVREALVRSGYKVR  251 (289)
T ss_dssp             ETTEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred             cCCeeeeeccCCHHHHHHHHHHcCCeEE
Confidence                     0135667777666666654

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.16  E-value=5.5e-07  Score=85.79  Aligned_cols=95  Identities=15%  Similarity=0.064  Sum_probs=68.1

Q ss_pred             CCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh----ccc---c-ccccccccCCCCC-Ccccccc
Q 017068          223 PAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GLI---G-VYHDWCEPFSTYP-RTYDLIH  291 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gli---g-~~~~w~~~f~typ-rtyDliH  291 (378)
                      ..-..|||+|||.|.++..|..+ ..   .|+-.|.+ .++..+-++    |+-   - ...|.. .++ ++ .+||+|.
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~-~~~~~fD~V~  190 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFGS---RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNML-DTP-FDKGAVTASW  190 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCC-CCTTCEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh-cCC-CCCCCEeEEE
Confidence            34468999999999999999876 44   45666655 667665553    432   1 223333 233 44 8999999


Q ss_pred             ccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      |..++...          +...+|-|+-|+|||||.+++.+
T Consensus       191 ~~~~l~~~----------~~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          191 NNESTMYV----------DLHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             EESCGGGS----------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCchhhC----------CHHHHHHHHHHHcCCCcEEEEEE
Confidence            98887754          15789999999999999999874

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.16  E-value=2.6e-07  Score=87.90  Aligned_cols=96  Identities=10%  Similarity=-0.033  Sum_probs=69.1

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccc-ccccccccc-C---CCCCCccccccccCccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLI-GVYHDWCEP-F---STYPRTYDLIHVSGIESLI  299 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGli-g~~~~w~~~-f---~typrtyDliH~~~~~~~~  299 (378)
                      ..|||+|||+|.++..|..+.-   .|+-.|.+ .++..+-++--- .+-.+|... +   ...+.+||+|.|+.++..+
T Consensus        47 ~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~  123 (261)
T 3iv6_A           47 STVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINRF  123 (261)
T ss_dssp             CEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGGS
T ss_pred             CEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhHhC
Confidence            5799999999999999987764   67778876 888877766421 122233221 1   1224689999999888765


Q ss_pred             cCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          300 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       300 ~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .       .-....++-+|-|+| |||.++++-
T Consensus       124 ~-------~~~~~~~l~~l~~lL-PGG~l~lS~  148 (261)
T 3iv6_A          124 T-------TEEARRACLGMLSLV-GSGTVRASV  148 (261)
T ss_dssp             C-------HHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred             C-------HHHHHHHHHHHHHhC-cCcEEEEEe
Confidence            3       123456899999999 999999984

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.15  E-value=2.6e-07  Score=91.20  Aligned_cols=95  Identities=16%  Similarity=0.133  Sum_probs=67.7

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh---------c-c----cc-cccccccc--C---C
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR---------G-L----IG-VYHDWCEP--F---S  281 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR---------G-l----ig-~~~~w~~~--f---~  281 (378)
                      ..|||+|||+|.++..|...   ..   .|+-.|.+ .++..+-++         | +    +- +..|..+.  .   +
T Consensus        85 ~~VLDlGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           85 ATVLDLGCGTGRDVYLASKLVGEHG---KVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHTTTC---EEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CEEEEecCccCHHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            47999999999998888653   33   55666765 778777766         5 2    11 22233321  0   2


Q ss_pred             CCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          282 TYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       282 typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ..+.+||+|++..++....         +...+|-|+-|+|||||++++.+
T Consensus       162 ~~~~~fD~V~~~~~l~~~~---------d~~~~l~~~~r~LkpgG~l~i~~  203 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLST---------NKLALFKEIHRVLRDGGELYFSD  203 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCS---------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEccchhcCC---------CHHHHHHHHHHHcCCCCEEEEEE
Confidence            2237999999999888654         24689999999999999999974

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.15  E-value=6.7e-07  Score=80.34  Aligned_cols=123  Identities=12%  Similarity=0.174  Sum_probs=76.3

Q ss_pred             eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhh----cc--cc-ccccccccCC-CC-CCcccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GL--IG-VYHDWCEPFS-TY-PRTYDLIHVS  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig-~~~~w~~~f~-ty-prtyDliH~~  293 (378)
                      ..|||+|||+|.|+..|...  ..   +|+..|.+ ..+..+.++    |+  +- +..|..+ ++ .+ +.+||+|.+.
T Consensus        43 ~~vLDiGcG~G~~~~~la~~~p~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~D~i~~~  118 (214)
T 1yzh_A           43 PIHVEVGSGKGAFVSGMAKQNPDI---NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD-LTDYFEDGEIDRLYLN  118 (214)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC-GGGTSCTTCCSEEEEE
T ss_pred             CeEEEEccCcCHHHHHHHHHCCCC---CEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCCCCCCEEEEE
Confidence            46999999999999888654  33   56667765 666655543    43  21 2234433 33 13 4789999987


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC-CHHHHHHHHHHHhcCCceEEE
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-~~~~~~~~~~~~~~l~W~~~~  353 (378)
                      ... .|.....+..+-....+|-++-|+|+|||.+++.. ..+..+.+.++++...|....
T Consensus       119 ~~~-~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~  178 (214)
T 1yzh_A          119 FSD-PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNG  178 (214)
T ss_dssp             SCC-CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred             CCC-CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeee
Confidence            321 11100000011123568999999999999999974 555667777766665677654

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.14  E-value=1.2e-06  Score=79.55  Aligned_cols=63  Identities=14%  Similarity=0.168  Sum_probs=53.5

Q ss_pred             CChHHHHHHHHHcCCCeEEEEccc-CCCCCC-CCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068           15 DSHKAQIQFALERGIPAFVAMLGT-RRLPFP-AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS   84 (378)
Q Consensus        15 D~se~~vq~A~erg~~~~~~v~da-e~LPfp-d~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis   84 (378)
                      |.|+.+++.|+++...+.+..+|. +.+|++ +++||+|+|+      .+.. .+++++.|+|||||+++..
T Consensus        77 D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------~~~~-~~l~~~~~~LkpgG~l~~~  141 (226)
T 3m33_A           77 DFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------RGPT-SVILRLPELAAPDAHFLYV  141 (226)
T ss_dssp             ESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------SCCS-GGGGGHHHHEEEEEEEEEE
T ss_pred             ECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------CCHH-HHHHHHHHHcCCCcEEEEe
Confidence            445799999999976788999998 789999 9999999986      2444 8899999999999999943

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.14  E-value=1.2e-06  Score=79.84  Aligned_cols=77  Identities=10%  Similarity=0.021  Sum_probs=59.9

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCC--CeEEEEcccCCCCCCC-----CceeEEEecCccccccCC-hHHHHHHHhhccc
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGI--PAFVAMLGTRRLPFPA-----FSFDIVHCSRCLIPFTAY-NATYLIEVDRLLR   76 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~--~~~~~v~dae~LPfpd-----~SFD~V~cs~~l~hw~~~-~~~~L~Ev~RVLk   76 (378)
                      .|+++++     |+.+++.|+++..  .+.+.++|...++++.     .+||+|+|..+++|+.+. ...+++++.|+||
T Consensus        80 ~v~gvD~-----s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~Lk  154 (245)
T 3ggd_A           80 RVIGLDV-----SKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLG  154 (245)
T ss_dssp             CEEEEES-----CHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHT
T ss_pred             CEEEEEC-----CHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcC
Confidence            4565555     5699999998743  5778888988876543     349999999999888732 2499999999999


Q ss_pred             CCcEEEEEcC
Q 017068           77 PGGYLVISGP   86 (378)
Q Consensus        77 PGG~lvis~p   86 (378)
                      |||++++...
T Consensus       155 pgG~l~i~~~  164 (245)
T 3ggd_A          155 KQGAMYLIEL  164 (245)
T ss_dssp             TTCEEEEEEE
T ss_pred             CCCEEEEEeC
Confidence            9999888764

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.14  E-value=3.2e-07  Score=85.62  Aligned_cols=120  Identities=9%  Similarity=0.032  Sum_probs=76.0

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc------------------c-----------------
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG------------------L-----------------  269 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG------------------l-----------------  269 (378)
                      .+|||+|||+|.++..+.....  -+|+-.|-+ .+|+.+-++-                  +                 
T Consensus        57 ~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (263)
T 2a14_A           57 DTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA  134 (263)
T ss_dssp             EEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             ceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence            5799999999988877766654  256777766 6666544320                  0                 


Q ss_pred             c--cccccccc--cCCCC-CCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH----------
Q 017068          270 I--GVYHDWCE--PFSTY-PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----------  334 (378)
Q Consensus       270 i--g~~~~w~~--~f~ty-prtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~----------  334 (378)
                      +  -...|-.+  +|++. ..+||+|.|..++....     .+.-++..+|-||-|+|||||++|+++..          
T Consensus       135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~-----~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~  209 (263)
T 2a14_A          135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECAC-----CSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKR  209 (263)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC-----SSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred             hheEEeccccCCCCCCccccCCCCEeeehHHHHHhc-----CCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCe
Confidence            1  11222222  23222 35899999999987542     01123457899999999999999998511          


Q ss_pred             ------HHHHHHHHHHhcCCceEE
Q 017068          335 ------EVIDKVSRIANTVRWTAA  352 (378)
Q Consensus       335 ------~~~~~~~~~~~~l~W~~~  352 (378)
                            -..+++.+++++--.++.
T Consensus       210 ~~~~~~~~~~~l~~~l~~aGF~i~  233 (263)
T 2a14_A          210 EFSCVALEKGEVEQAVLDAGFDIE  233 (263)
T ss_dssp             EEECCCCCHHHHHHHHHHTTEEEE
T ss_pred             EeeccccCHHHHHHHHHHCCCEEE
Confidence                  034566666665555544

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.13  E-value=1.8e-06  Score=80.69  Aligned_cols=136  Identities=13%  Similarity=0.061  Sum_probs=85.1

Q ss_pred             eeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHh----hcc--ccccccccccCC---CCCCccccccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYD----RGL--IGVYHDWCEPFS---TYPRTYDLIHV  292 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~e----RGl--ig~~~~w~~~f~---typrtyDliH~  292 (378)
                      -.+|||+|||+|.+|..|...  ..   .|+-.|.+ ..+.++-+    .|+  +-+++.--+.++   .++.+||+|.|
T Consensus        81 ~~~vLDiG~G~G~~~i~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s  157 (249)
T 3g89_A           81 PLRVLDLGTGAGFPGLPLKIVRPEL---ELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA  157 (249)
T ss_dssp             SCEEEEETCTTTTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred             CCEEEEEcCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence            458999999999988777532  33   45666655 55554443    355  333333233333   24579999988


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC---CHHHHHHHHHHHhcCCceEEEe-cC-CCCCCCCeEEE
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD---SPEVIDKVSRIANTVRWTAAVH-DK-EPGSNGREKIL  367 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d---~~~~~~~~~~~~~~l~W~~~~~-~~-~~~~~~~e~~l  367 (378)
                      .. +            .++..++-++-|+|+|||.+++-.   ..+.+..+.+.++.+-++.... +- -++....-.++
T Consensus       158 ~a-~------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~  224 (249)
T 3g89_A          158 RA-V------------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLV  224 (249)
T ss_dssp             ES-S------------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEE
T ss_pred             CC-c------------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEE
Confidence            42 2            234678888999999999988754   3566677777777788876532 11 12222344566


Q ss_pred             EEEecCCCC
Q 017068          368 VATKSLWKL  376 (378)
Q Consensus       368 ~~~K~~w~~  376 (378)
                      +.+|.-.++
T Consensus       225 ~~~k~~~t~  233 (249)
T 3g89_A          225 VLEKTAPTP  233 (249)
T ss_dssp             EEEECSCCC
T ss_pred             EEEeCCCCC
Confidence            677765554

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.13  E-value=4.5e-07  Score=87.15  Aligned_cols=136  Identities=16%  Similarity=0.165  Sum_probs=88.1

Q ss_pred             hcCCCCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCCcchHHHHh----hcc---c-cccccccccCCCCCCccc
Q 017068          219 KLGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYD----RGL---I-GVYHDWCEPFSTYPRTYD  288 (378)
Q Consensus       219 ~~~~~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~~~l~~i~e----RGl---i-g~~~~w~~~f~typrtyD  288 (378)
                      .+......+|+|+|||+|.++..|.+.  ..   .++-.|.+..++.+-+    .|+   + =+-+|..+++   |..||
T Consensus       164 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---p~~~D  237 (332)
T 3i53_A          164 KYDWAALGHVVDVGGGSGGLLSALLTAHEDL---SGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPL---PAGAG  237 (332)
T ss_dssp             SSCCGGGSEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---CCSCS
T ss_pred             hCCCCCCCEEEEeCCChhHHHHHHHHHCCCC---eEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCC---CCCCc
Confidence            345566789999999999999888742  22   2233344455544433    354   2 1234544444   44899


Q ss_pred             cccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH----------------------HHHHHHHHHHhc
Q 017068          289 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----------------------EVIDKVSRIANT  346 (378)
Q Consensus       289 liH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~----------------------~~~~~~~~~~~~  346 (378)
                      +|.|..++..|.      + -....+|-++-|+|+|||+++|.|..                      -..++++++++.
T Consensus       238 ~v~~~~vlh~~~------~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~  310 (332)
T 3i53_A          238 GYVLSAVLHDWD------D-LSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQ  310 (332)
T ss_dssp             EEEEESCGGGSC------H-HHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHH
T ss_pred             EEEEehhhccCC------H-HHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHH
Confidence            999999998875      1 11257999999999999999997531                      124556677777


Q ss_pred             CCceEEEecCCCCCCCCeEEEEEEe
Q 017068          347 VRWTAAVHDKEPGSNGREKILVATK  371 (378)
Q Consensus       347 l~W~~~~~~~~~~~~~~e~~l~~~K  371 (378)
                      --++........   + ..++.++|
T Consensus       311 aGf~~~~~~~~~---~-~~vie~r~  331 (332)
T 3i53_A          311 AGLAVRAAHPIS---Y-VSIVEMTA  331 (332)
T ss_dssp             TTEEEEEEEECS---S-SEEEEEEE
T ss_pred             CCCEEEEEEECC---C-cEEEEEee
Confidence            777765433221   2 66777776

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.13  E-value=4.8e-06  Score=76.87  Aligned_cols=82  Identities=13%  Similarity=0.079  Sum_probs=59.6

Q ss_pred             CCeEEEecCCCCC-hHHHHHHHHHc----CC--CeEEEEcc---cCCCCCCCCceeEEEecCccccccCChHHHHHHHhh
Q 017068            4 ENILTLSFAPRDS-HKAQIQFALER----GI--PAFVAMLG---TRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDR   73 (378)
Q Consensus         4 ~~v~~ms~ap~D~-se~~vq~A~er----g~--~~~~~v~d---ae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~R   73 (378)
                      ..|+++++++... |+.|++.|+++    ++  .+.+..+|   ...+||++++||+|+|..+++|+.++. .+++.+.+
T Consensus        69 ~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~~~~~~~  147 (275)
T 3bkx_A           69 GHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASAN-ALALLFKN  147 (275)
T ss_dssp             CEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHH-HHHHHHHH
T ss_pred             CEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCEEEEEEccchhhCCCHH-HHHHHHHH
Confidence            4678888877421 11244455443    33  36777777   678899999999999999999988876 66666677


Q ss_pred             cccCCcEEEEEcC
Q 017068           74 LLRPGGYLVISGP   86 (378)
Q Consensus        74 VLkPGG~lvis~p   86 (378)
                      +++|||+++++..
T Consensus       148 l~~~gG~l~~~~~  160 (275)
T 3bkx_A          148 MAAVCDHVDVAEW  160 (275)
T ss_dssp             HTTTCSEEEEEEE
T ss_pred             HhCCCCEEEEEEe
Confidence            7777999999765

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.12  E-value=6.6e-07  Score=88.51  Aligned_cols=116  Identities=16%  Similarity=0.168  Sum_probs=71.2

Q ss_pred             HHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCCcchHHHH----hhcc---ccccccccccC
Q 017068          208 RVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIY----DRGL---IGVYHDWCEPF  280 (378)
Q Consensus       208 ~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~~~l~~i~----eRGl---ig~~~~w~~~f  280 (378)
                      +...|.+.|........=..|||+|||+|.++..|...+.  -.|+..|.+.++..+.    +.|+   +-+++.=.+.+
T Consensus        47 r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  124 (376)
T 3r0q_C           47 RMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDI  124 (376)
T ss_dssp             HHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred             HHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhc
Confidence            4455666654332222336899999999999988876643  1344555445554433    3444   23333222223


Q ss_pred             CCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          281 STYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       281 ~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      + +|..||+|+|..+.....      ..-.+..++-+++|+|+|||.+|+..
T Consensus       125 ~-~~~~~D~Iv~~~~~~~l~------~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          125 S-LPEKVDVIISEWMGYFLL------RESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             C-CSSCEEEEEECCCBTTBT------TTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             C-cCCcceEEEEcChhhccc------chHHHHHHHHHHHhhCCCCeEEEEec
Confidence            2 458999999966443332      22335678999999999999998863

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.12  E-value=1.4e-06  Score=73.59  Aligned_cols=135  Identities=15%  Similarity=0.124  Sum_probs=73.1

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCCcchHHHHhhccccccccccccCC--------CCCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFS--------TYPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~~~l~~i~eRGlig~~~~w~~~f~--------typrtyDliH~~~  294 (378)
                      .+|||+|||.|.++.+|...   ..-+..+-...   .+..   ..+--...|..+. +        .-+.+||+|.++.
T Consensus        24 ~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~---~~~~---~~~~~~~~d~~~~-~~~~~~~~~~~~~~~D~i~~~~   96 (180)
T 1ej0_A           24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---MDPI---VGVDFLQGDFRDE-LVMKALLERVGDSKVQVVMSDM   96 (180)
T ss_dssp             CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---CCCC---TTEEEEESCTTSH-HHHHHHHHHHTTCCEEEEEECC
T ss_pred             CeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc---cccc---CcEEEEEcccccc-hhhhhhhccCCCCceeEEEECC
Confidence            48999999999999988654   23222222211   1111   1111122233321 1        1137999999977


Q ss_pred             ccccccCCCCCCCCCC------ccceeeeecccccCCCeEEEeCC-HHHHHHHHHHHhcCCceEEE-e-cCCCCCCCCeE
Q 017068          295 IESLIKNPGSNKNSCS------LVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWTAAV-H-DKEPGSNGREK  365 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~------~~~~l~EmDRiLRPgG~~ii~d~-~~~~~~~~~~~~~l~W~~~~-~-~~~~~~~~~e~  365 (378)
                      .+.....    ...-.      ...+|-++-|+|+|||.+++... ......+.+..+. .|+... . .........|.
T Consensus        97 ~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  171 (180)
T 1ej0_A           97 APNMSGT----PAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSREV  171 (180)
T ss_dssp             CCCCCSC----HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEECCTTSCTTCCEE
T ss_pred             CccccCC----CccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhEEeecCCcccccCceE
Confidence            6543210    00000      14688999999999999999743 2223333333333 365433 2 22222345789


Q ss_pred             EEEEEec
Q 017068          366 ILVATKS  372 (378)
Q Consensus       366 ~l~~~K~  372 (378)
                      +++|++.
T Consensus       172 ~~~~~~~  178 (180)
T 1ej0_A          172 YIVATGR  178 (180)
T ss_dssp             EEEEEEE
T ss_pred             EEEEccC
Confidence            9998763

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.12  E-value=4e-07  Score=88.30  Aligned_cols=96  Identities=15%  Similarity=0.189  Sum_probs=61.8

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCCcchHHHHh----hcc---ccccccccccCCCCC-CccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYD----RGL---IGVYHDWCEPFSTYP-RTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~~~l~~i~e----RGl---ig~~~~w~~~f~typ-rtyDliH~~~~~~  297 (378)
                      ..|||+|||+|.++..+...+.  -.|...|.+.++..+-+    .|+   +-+++.-.+.++ .| ..||+|.|..+..
T Consensus        40 ~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~~~  116 (328)
T 1g6q_1           40 KIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWMGY  116 (328)
T ss_dssp             CEEEEETCTTSHHHHHHHHTCC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCCBT
T ss_pred             CEEEEecCccHHHHHHHHHCCC--CEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhcc-CCCCcccEEEEeCchh
Confidence            4899999999999988876543  13444444444544333    354   223332222233 34 7899999986654


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEE
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV  330 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii  330 (378)
                      .+.      ..-.+..++-+++|+|+|||.++.
T Consensus       117 ~l~------~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          117 FLL------YESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             TBS------TTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             hcc------cHHHHHHHHHHHHhhcCCCeEEEE
Confidence            433      233456788999999999999984

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.11  E-value=2.9e-07  Score=88.68  Aligned_cols=100  Identities=9%  Similarity=0.103  Sum_probs=66.0

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-ccc----------c-cccc------ccCC-CC-C
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-IGV----------Y-HDWC------EPFS-TY-P  284 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig~----------~-~~w~------~~f~-ty-p  284 (378)
                      ..|||+|||.|+....++.....  +|+-.|.+ .+|..+-+|-- .+.          | ...+      +.++ .+ +
T Consensus        50 ~~VLDlGCG~G~~l~~~~~~~~~--~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           50 RKVLAIDFGNGADLEKYFYGEIA--LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             CEEEETTCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CeEEEEecCCcHhHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            57999999999877665544432  56777876 88887776621 110          1 1111      2221 13 3


Q ss_pred             CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          285 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       285 rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      .+||+|-|..++.+..+     . -....+|-|+-|+|||||++|+...
T Consensus       128 ~~FD~V~~~~~lhy~~~-----~-~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYSFH-----P-RHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             SCEEEEEEESCGGGTCS-----T-TTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCeeEEEECchHHHhCC-----H-HHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            79999999877654321     1 1346899999999999999999864

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.11  E-value=1.3e-06  Score=78.78  Aligned_cols=110  Identities=12%  Similarity=0.066  Sum_probs=75.0

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----ccc---c-ccccccccCCCCCCccccccccCcc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLI---G-VYHDWCEPFSTYPRTYDLIHVSGIE  296 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gli---g-~~~~w~~~f~typrtyDliH~~~~~  296 (378)
                      ..|||+|||+|.++..|.....   .|+-.|.+ ..+..+-++    |+-   - +..|..+.++.. ..||+|.+...+
T Consensus        57 ~~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~-~~~D~v~~~~~~  132 (204)
T 3njr_A           57 ELLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL-PLPEAVFIGGGG  132 (204)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS-CCCSEEEECSCC
T ss_pred             CEEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC-CCCCEEEECCcc
Confidence            5899999999999988877654   56666765 677665544    442   1 223333323322 469998875422


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEeC-CHHHHHHHHHHHhcCCceEEE
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-~~~~~~~~~~~~~~l~W~~~~  353 (378)
                                   +.. ++-++-|+|||||.+++.. ..+...++.+.++...+++..
T Consensus       133 -------------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~  176 (204)
T 3njr_A          133 -------------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLR  176 (204)
T ss_dssp             -------------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEE
T ss_pred             -------------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEE
Confidence                         235 8899999999999999986 456777777777766676543

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.09  E-value=4e-07  Score=89.17  Aligned_cols=100  Identities=12%  Similarity=0.250  Sum_probs=68.2

Q ss_pred             CCeeEEEecCCcceeeeeeccC--CCeeEEEeccCCCCcchHHHHhh----cc---c-cccccccccCCCCCCccccccc
Q 017068          223 PAIRNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKSSTLSVIYDR----GL---I-GVYHDWCEPFSTYPRTYDLIHV  292 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~faa~L~~--~~vwvmnv~p~~~~~~l~~i~eR----Gl---i-g~~~~w~~~f~typrtyDliH~  292 (378)
                      ...+.|||+|||+|.++.+|.+  ...   .++-.|.+.++..+-++    |+   + -+-+|..+.-.++|.+||+|.+
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~  254 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEV---EVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWM  254 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTC---EEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCC---EEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEE
Confidence            3568999999999999999875  233   34444445556555443    43   1 1234443321135689999999


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ..++..|.+     .  ....+|-++-|+|+|||.++|.|
T Consensus       255 ~~vlh~~~~-----~--~~~~~l~~~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          255 SQFLDCFSE-----E--EVISILTRVAQSIGKDSKVYIME  287 (363)
T ss_dssp             ESCSTTSCH-----H--HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             echhhhCCH-----H--HHHHHHHHHHHhcCCCcEEEEEe
Confidence            999987751     1  12468899999999999999965

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.08  E-value=4e-07  Score=85.51  Aligned_cols=116  Identities=13%  Similarity=-0.005  Sum_probs=78.6

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc-c----------------------cc-ccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG-L----------------------IG-VYHDWCEPF  280 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG-l----------------------ig-~~~~w~~~f  280 (378)
                      ..|||+|||.|.++..|.++..   +|+-.|.+ ..+..+.++- +                      +- ...|..+ +
T Consensus        70 ~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~-l  145 (252)
T 2gb4_A           70 LRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD-L  145 (252)
T ss_dssp             CEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT-G
T ss_pred             CeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc-C
Confidence            4799999999999999998876   67888877 7787775542 1                      11 1122221 2


Q ss_pred             CCC-CCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC----------C--HHHHHHHHHHHhcC
Q 017068          281 STY-PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD----------S--PEVIDKVSRIANTV  347 (378)
Q Consensus       281 ~ty-prtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d----------~--~~~~~~~~~~~~~l  347 (378)
                      +.- +.+||+|-+..+|..+.       ......++-||-|+|||||.+++..          .  .-.-+++.++... 
T Consensus       146 ~~~~~~~FD~V~~~~~l~~l~-------~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-  217 (252)
T 2gb4_A          146 PRANIGKFDRIWDRGALVAIN-------PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-  217 (252)
T ss_dssp             GGGCCCCEEEEEESSSTTTSC-------GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-
T ss_pred             CcccCCCEEEEEEhhhhhhCC-------HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-
Confidence            222 27999999988887653       1233568999999999999996421          0  0134677777766 


Q ss_pred             CceEEE
Q 017068          348 RWTAAV  353 (378)
Q Consensus       348 ~W~~~~  353 (378)
                      .|++..
T Consensus       218 ~f~v~~  223 (252)
T 2gb4_A          218 KCSMQC  223 (252)
T ss_dssp             TEEEEE
T ss_pred             CeEEEE
Confidence            487764

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.08  E-value=4.2e-06  Score=76.23  Aligned_cols=71  Identities=20%  Similarity=0.256  Sum_probs=55.1

Q ss_pred             CChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccC--ChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA--YNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~--~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.|+.+++.|+++    +..+.+..+|...++++ ++||+|+|..+..++..  ....+++++.|+|||||.+++..+
T Consensus        70 D~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~  146 (252)
T 1wzn_A           70 DLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (252)
T ss_dssp             ESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence            4556888888765    55678889999888886 68999998755444333  225899999999999999998765

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.08  E-value=2.4e-06  Score=83.79  Aligned_cols=140  Identities=12%  Similarity=0.164  Sum_probs=91.0

Q ss_pred             hhcCCCCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCCcchHHHHh----hcc---c-cccccccccCCCCCCcc
Q 017068          218 VKLGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYD----RGL---I-GVYHDWCEPFSTYPRTY  287 (378)
Q Consensus       218 ~~~~~~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~~~l~~i~e----RGl---i-g~~~~w~~~f~typrty  287 (378)
                      ..+......+|+|+|||+|.++..|.+.  .+   .++-.|.+..+..+-+    .|+   + =+-+|..++   +|..|
T Consensus       196 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~---~p~~~  269 (369)
T 3gwz_A          196 AAYDFSGAATAVDIGGGRGSLMAAVLDAFPGL---RGTLLERPPVAEEARELLTGRGLADRCEILPGDFFET---IPDGA  269 (369)
T ss_dssp             HHSCCTTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTC---CCSSC
T ss_pred             HhCCCccCcEEEEeCCCccHHHHHHHHHCCCC---eEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCC---CCCCc
Confidence            3455667899999999999999988754  33   2333344444444333    344   1 133454444   44589


Q ss_pred             ccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH------------------------HHHHHHHHH
Q 017068          288 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP------------------------EVIDKVSRI  343 (378)
Q Consensus       288 DliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~------------------------~~~~~~~~~  343 (378)
                      |+|.+..++..|.+     ..|  ..+|-++-|+|+|||+++|.|..                        -..++++++
T Consensus       270 D~v~~~~vlh~~~d-----~~~--~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~l  342 (369)
T 3gwz_A          270 DVYLIKHVLHDWDD-----DDV--VRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAAL  342 (369)
T ss_dssp             SEEEEESCGGGSCH-----HHH--HHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHH
T ss_pred             eEEEhhhhhccCCH-----HHH--HHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHH
Confidence            99999999987751     111  36899999999999999996420                        124556777


Q ss_pred             HhcCCceEEEecCCCCCCCCeEEEEEEec
Q 017068          344 ANTVRWTAAVHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       344 ~~~l~W~~~~~~~~~~~~~~e~~l~~~K~  372 (378)
                      ++.--++.......  ..+...++.|+|.
T Consensus       343 l~~aGf~~~~~~~~--~~~~~svie~~~a  369 (369)
T 3gwz_A          343 LEKSGLRVERSLPC--GAGPVRIVEIRRA  369 (369)
T ss_dssp             HHTTTEEEEEEEEC--SSSSEEEEEEEEC
T ss_pred             HHHCCCeEEEEEEC--CCCCcEEEEEEeC
Confidence            78878887644221  1245678888763

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.08  E-value=4.9e-06  Score=79.88  Aligned_cols=69  Identities=20%  Similarity=0.187  Sum_probs=56.8

Q ss_pred             CChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |. +.+++.|+++    ++  .+.+..+|.. .|+|. +||+|+|..+++||+++. .++|+++.|+|||||++++..+
T Consensus       200 D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  275 (332)
T 3i53_A          200 DL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEA  275 (332)
T ss_dssp             EC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             cC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence            55 5788888764    43  3778888876 57776 899999999999998863 4899999999999999999765

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.07  E-value=3.3e-06  Score=80.48  Aligned_cols=71  Identities=15%  Similarity=0.171  Sum_probs=58.7

Q ss_pred             CCChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           14 RDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .|.+ .+++.|+++    ++  .+.+..+|....|++++ ||+|+|..+++||.++. ..+++++.|+|||||++++..+
T Consensus       195 ~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  272 (335)
T 2r3s_A          195 VDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDF  272 (335)
T ss_dssp             EECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEee
Confidence            4567 788888775    43  37788889888888876 99999999999997653 5899999999999999998765

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.07  E-value=4.3e-06  Score=81.80  Aligned_cols=75  Identities=17%  Similarity=0.189  Sum_probs=60.1

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCC--CCCCCceeEEEecCccccccCCh-HHHHHHHhhcc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRL--PFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLL   75 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~L--Pfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVL   75 (378)
                      .++++++      +.+++.|+++    +.  .+.+..+|....  |+| ++||+|++..+++||+++. ..+|+++.|+|
T Consensus       205 ~~~~~D~------~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L  277 (363)
T 3dp7_A          205 EVTIVDL------PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQFLDCFSEEEVISILTRVAQSI  277 (363)
T ss_dssp             EEEEEEC------HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEESCSTTSCHHHHHHHHHHHHHHC
T ss_pred             EEEEEeC------HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEechhhhCCHHHHHHHHHHHHHhc
Confidence            3555554      4778888875    33  367888888775  687 8899999999999998765 47899999999


Q ss_pred             cCCcEEEEEcC
Q 017068           76 RPGGYLVISGP   86 (378)
Q Consensus        76 kPGG~lvis~p   86 (378)
                      ||||++++..+
T Consensus       278 ~pgG~l~i~e~  288 (363)
T 3dp7_A          278 GKDSKVYIMET  288 (363)
T ss_dssp             CTTCEEEEEEC
T ss_pred             CCCcEEEEEee
Confidence            99999999765

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.06  E-value=1.1e-06  Score=79.66  Aligned_cols=122  Identities=7%  Similarity=0.116  Sum_probs=73.9

Q ss_pred             eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhh----cc--cc-ccccccccCCC-C-CCcccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GL--IG-VYHDWCEPFST-Y-PRTYDLIHVS  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig-~~~~w~~~f~t-y-prtyDliH~~  293 (378)
                      ..|||+|||+|.++..|...  ..   +|+-.|.+ ..+..+.++    |+  +- +..|..+ ++. + +.+||.|++.
T Consensus        40 ~~vLDiGcG~G~~~~~la~~~p~~---~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~-l~~~~~~~~~d~v~~~  115 (213)
T 2fca_A           40 PIHIEVGTGKGQFISGMAKQNPDI---NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT-LTDVFEPGEVKRVYLN  115 (213)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG-HHHHCCTTSCCEEEEE
T ss_pred             ceEEEEecCCCHHHHHHHHHCCCC---CEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCcCCcCEEEEE
Confidence            46999999999999988754  34   66777866 677665553    54  22 2233332 221 2 3789998764


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCCeEEEe-CCHHHHHHHHHHHhcCCceEE
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTVRWTAA  352 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-d~~~~~~~~~~~~~~l~W~~~  352 (378)
                      .. ..|........+-....+|-|+-|+|+|||.+++. +.....+.+.+.++...|...
T Consensus       116 ~~-~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~  174 (213)
T 2fca_A          116 FS-DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLT  174 (213)
T ss_dssp             SC-CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred             CC-CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence            21 11210000111222357899999999999999987 455566666555544456543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.05  E-value=6.3e-07  Score=87.72  Aligned_cols=97  Identities=15%  Similarity=0.173  Sum_probs=63.1

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCCcchHHHH----hhcc---ccccccccccCCCCC-CccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIY----DRGL---IGVYHDWCEPFSTYP-RTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~~~l~~i~----eRGl---ig~~~~w~~~f~typ-rtyDliH~~~~~~  297 (378)
                      .+|||+|||+|.++..|.+.+.  -.|.-.|.+.++..+.    +.|+   +-+.+.=-+.+ ++| .+||+|.+..+..
T Consensus        68 ~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~Iis~~~~~  144 (349)
T 3q7e_A           68 KVVLDVGSGTGILCMFAAKAGA--RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDIIISEWMGY  144 (349)
T ss_dssp             CEEEEESCTTSHHHHHHHHTTC--SEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEEEEECCCBB
T ss_pred             CEEEEEeccchHHHHHHHHCCC--CEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHc-cCCCCceEEEEEccccc
Confidence            5799999999999998887643  1334444444454433    3454   22222222223 344 8999999977654


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      .+.      ..-.+..++-+++|+|+|||.+|..
T Consensus       145 ~l~------~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          145 CLF------YESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             TBT------BTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             ccc------CchhHHHHHHHHHHhCCCCCEEccc
Confidence            443      2334567889999999999999754

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.05  E-value=6.1e-07  Score=81.16  Aligned_cols=132  Identities=10%  Similarity=0.109  Sum_probs=79.7

Q ss_pred             eeEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCCCCC-----Ccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFSTYP-----RTY  287 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~typ-----rty  287 (378)
                      -++|||+|||+|.++..|...   ..   .|+..|.+ ..+..+-++    |+   +- +..|..+.++..+     .+|
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f  135 (221)
T 3u81_A           59 PSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL  135 (221)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence            468999999999999888762   33   45556655 566555442    44   21 2334434344444     689


Q ss_pred             ccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-----HHHHHHHHHHHhcCCceEEEecC-CCCCC
Q 017068          288 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-----PEVIDKVSRIANTVRWTAAVHDK-EPGSN  361 (378)
Q Consensus       288 DliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-----~~~~~~~~~~~~~l~W~~~~~~~-~~~~~  361 (378)
                      |+|.++.....+.         ....++.++ |+|||||.+++.+.     ...++.++   ..=.++.....+ .....
T Consensus       136 D~V~~d~~~~~~~---------~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~  202 (221)
T 3u81_A          136 DMVFLDHWKDRYL---------PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVR---GSSSFECTHYSSYLEYMK  202 (221)
T ss_dssp             SEEEECSCGGGHH---------HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHH---HCTTEEEEEEEEEETTTT
T ss_pred             EEEEEcCCcccch---------HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHh---hCCCceEEEcccccccCC
Confidence            9999876555443         112455567 99999999999864     23333333   334566554321 11122


Q ss_pred             CCeEEEEEEec
Q 017068          362 GREKILVATKS  372 (378)
Q Consensus       362 ~~e~~l~~~K~  372 (378)
                      ..+++.+++++
T Consensus       203 ~~dG~~~~~~~  213 (221)
T 3u81_A          203 VVDGLEKAIYQ  213 (221)
T ss_dssp             EEEEEEEEEEC
T ss_pred             CCCceEEEEEe
Confidence            45788888764

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.04  E-value=5.4e-06  Score=90.45  Aligned_cols=76  Identities=16%  Similarity=0.195  Sum_probs=63.0

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----------CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHh
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----------GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVD   72 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----------g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~   72 (378)
                      .|++++++     +.|++.|+++          +. .+.+.++|+..+|+++++||+|+|..+++|+.++. ..+++++.
T Consensus       748 ~VtGVDIS-----~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~  822 (950)
T 3htx_A          748 TIIGVDIS-----PKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVL  822 (950)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred             eEEEEECC-----HHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHH
Confidence            46666555     6899999772          33 36789999999999999999999999999988755 35899999


Q ss_pred             hcccCCcEEEEEcC
Q 017068           73 RLLRPGGYLVISGP   86 (378)
Q Consensus        73 RVLkPGG~lvis~p   86 (378)
                      |+|||| .++++.|
T Consensus       823 RvLKPG-~LIISTP  835 (950)
T 3htx_A          823 SLFHPK-LLIVSTP  835 (950)
T ss_dssp             HTTCCS-EEEEEEC
T ss_pred             HHcCCC-EEEEEec
Confidence            999999 8888876

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.04  E-value=8.6e-07  Score=86.55  Aligned_cols=111  Identities=15%  Similarity=0.150  Sum_probs=65.1

Q ss_pred             HHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCCcchHHHHh----hcc---ccccccccccCCC
Q 017068          210 AYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYD----RGL---IGVYHDWCEPFST  282 (378)
Q Consensus       210 ~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~~~l~~i~e----RGl---ig~~~~w~~~f~t  282 (378)
                      ..|.+.+...+....=..|||+|||+|.++..+...+.  -.|...|.+.++..+-+    .|+   +-+++.=.+.++ 
T Consensus        50 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-  126 (340)
T 2fyt_A           50 ESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH-  126 (340)
T ss_dssp             HHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-
T ss_pred             HHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhc-
Confidence            34555444322222234799999999999988876642  13344444434544433    343   222222122232 


Q ss_pred             CC-CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEE
Q 017068          283 YP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVV  329 (378)
Q Consensus       283 yp-rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~i  329 (378)
                      +| .+||+|.+..+...+.      ..-.+..+|-++.|+|+|||.++
T Consensus       127 ~~~~~~D~Ivs~~~~~~l~------~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          127 LPVEKVDVIISEWMGYFLL------FESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             CSCSCEEEEEECCCBTTBT------TTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CCCCcEEEEEEcCchhhcc------CHHHHHHHHHHHHhhcCCCcEEE
Confidence            44 7999999976432222      22234568899999999999998

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.03  E-value=3e-07  Score=85.50  Aligned_cols=100  Identities=15%  Similarity=0.063  Sum_probs=66.3

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCCC-CCCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFST-YPRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~t-yprtyDliH~~~~  295 (378)
                      ..|||+|||.|.++..|...+.  -+|+-.|.+ ..+..+-++    |+   +- +..|..+ ++. .+.+||+|.|..+
T Consensus        66 ~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~v~~~~~  142 (298)
T 1ri5_A           66 DSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG-RHMDLGKEFDVISSQFS  142 (298)
T ss_dssp             CEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTT-SCCCCSSCEEEEEEESC
T ss_pred             CeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccc-cccCCCCCcCEEEECch
Confidence            5899999999999988876542  145666655 666665554    22   12 1223322 222 2479999999888


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      +....     .+.-....+|-|+-|+|+|||.+++...
T Consensus       143 l~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~~~~~  175 (298)
T 1ri5_A          143 FHYAF-----STSESLDIAQRNIARHLRPGGYFIMTVP  175 (298)
T ss_dssp             GGGGG-----SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hhhhc-----CCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            75410     0122346789999999999999999864

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.02  E-value=5.4e-06  Score=72.15  Aligned_cols=77  Identities=14%  Similarity=0.147  Sum_probs=53.2

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCC-CCCCceeEEEecCccccc--------cCChHHHHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP-FPAFSFDIVHCSRCLIPF--------TAYNATYLIE   70 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LP-fpd~SFD~V~cs~~l~hw--------~~~~~~~L~E   70 (378)
                      .|++++++     +.+++.|+++    ++ .+.+...+.+.++ +++++||+|+++....+.        .+....++++
T Consensus        46 ~v~~vD~s-----~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~  120 (185)
T 3mti_A           46 KVYAFDVQ-----EQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEK  120 (185)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-----------CHHHHHHHHHH
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHH
Confidence            46666555     6888888775    43 4667777777654 678999999987433332        1222378899


Q ss_pred             HhhcccCCcEEEEEcC
Q 017068           71 VDRLLRPGGYLVISGP   86 (378)
Q Consensus        71 v~RVLkPGG~lvis~p   86 (378)
                      +.|+|||||++++...
T Consensus       121 ~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A          121 ILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             HHHHEEEEEEEEEEEC
T ss_pred             HHHhcCCCcEEEEEEe
Confidence            9999999999998764

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.02  E-value=1.4e-06  Score=82.53  Aligned_cols=111  Identities=13%  Similarity=0.149  Sum_probs=76.5

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cccc---c-cccccccCCCCCCccccccccCcc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG---V-YHDWCEPFSTYPRTYDLIHVSGIE  296 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig---~-~~~w~~~f~typrtyDliH~~~~~  296 (378)
                      ..|||+|||+|+|+..+....--  .|+..|.+ ..+..+-++    |+-.   . ..|..+ ++. +.+||+|.++..+
T Consensus       127 ~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~-~~~-~~~fD~Vi~~~p~  202 (278)
T 2frn_A          127 ELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRD-FPG-ENIADRILMGYVV  202 (278)
T ss_dssp             CEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTT-CCC-CSCEEEEEECCCS
T ss_pred             CEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHH-hcc-cCCccEEEECCch
Confidence            47999999999999888754321  35666765 666655443    5422   1 223222 332 6799999885332


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-------HHHHHHHHHHHhcCCceEEE
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-------PEVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-------~~~~~~~~~~~~~l~W~~~~  353 (378)
                      .             ...++-++-|+|+|||.+++.+.       .+..+++.+.++...|++..
T Consensus       203 ~-------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          203 R-------------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             S-------------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred             h-------------HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence            2             24678889999999999999643       35678888889999998876

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.02  E-value=3.1e-07  Score=87.18  Aligned_cols=47  Identities=21%  Similarity=0.353  Sum_probs=33.7

Q ss_pred             CCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          283 YPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       283 yprtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .+.+||+|.|..++...+   .......+..++-++-|+|||||++|+..
T Consensus       174 ~~~~fD~I~~~~vl~~ih---l~~~~~~~~~~l~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          174 QTPEYDVVLCLSLTKWVH---LNWGDEGLKRMFRRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             CCCCEEEEEEESCHHHHH---HHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCCCcCEEEEChHHHHhh---hcCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            358999999988874321   00011234678999999999999999974

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.01  E-value=8.7e-07  Score=85.54  Aligned_cols=138  Identities=12%  Similarity=0.159  Sum_probs=88.7

Q ss_pred             cCCCC-eeEEEecCCcceeeeeeccCC--CeeEEEeccCCCCcchHHHHh----hccc----cccccccccCCCCCCccc
Q 017068          220 LGTPA-IRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYD----RGLI----GVYHDWCEPFSTYPRTYD  288 (378)
Q Consensus       220 ~~~~~-iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~~~l~~i~e----RGli----g~~~~w~~~f~typrtyD  288 (378)
                      +.... -+.|||+|||.|.++..|.+.  .+   .++-.|.+..+..+-+    .|+-    -+-+|..+.-+..|..||
T Consensus       174 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D  250 (352)
T 3mcz_A          174 LGVFARARTVIDLAGGHGTYLAQVLRRHPQL---TGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAAD  250 (352)
T ss_dssp             CGGGTTCCEEEEETCTTCHHHHHHHHHCTTC---EEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEE
T ss_pred             CCCcCCCCEEEEeCCCcCHHHHHHHHhCCCC---eEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCcc
Confidence            34444 789999999999999988753  33   2233344445544433    2432    233444432111467899


Q ss_pred             cccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC--------H-------------------HHHHHHH
Q 017068          289 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS--------P-------------------EVIDKVS  341 (378)
Q Consensus       289 liH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~--------~-------------------~~~~~~~  341 (378)
                      +|.+.+++..|.      + -....+|-++-|+|+|||.++|.+.        .                   ...++++
T Consensus       251 ~v~~~~vlh~~~------~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~  323 (352)
T 3mcz_A          251 VVMLNDCLHYFD------A-REAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIA  323 (352)
T ss_dssp             EEEEESCGGGSC------H-HHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHH
T ss_pred             EEEEecccccCC------H-HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHH
Confidence            999999998775      1 1125799999999999999999651        0                   0134466


Q ss_pred             HHHhcCCceEEEecCCCCCCCCeEEEEEEec
Q 017068          342 RIANTVRWTAAVHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       342 ~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~  372 (378)
                      ++++.--++.....     .+...+++++|+
T Consensus       324 ~ll~~aGf~~~~~~-----~g~~~l~~a~kp  349 (352)
T 3mcz_A          324 GVVRDAGLAVGERS-----IGRYTLLIGQRS  349 (352)
T ss_dssp             HHHHHTTCEEEEEE-----ETTEEEEEEECC
T ss_pred             HHHHHCCCceeeec-----cCceEEEEEecC
Confidence            66666677765422     245789999986

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.01  E-value=7.7e-06  Score=79.47  Aligned_cols=71  Identities=7%  Similarity=0.112  Sum_probs=55.2

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      .|+++++.     +.|++.|+++    |+ .+.+..+|+..+|  +++||+|++...   ..+.. .+++|+.|+|||||
T Consensus       148 ~V~gIDis-----~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~---~~d~~-~~l~el~r~LkPGG  216 (298)
T 3fpf_A          148 RVNVVEIE-----PDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAAL---AEPKR-RVFRNIHRYVDTET  216 (298)
T ss_dssp             EEEEEESS-----HHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECTT---CSCHH-HHHHHHHHHCCTTC
T ss_pred             EEEEEECC-----HHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECCC---ccCHH-HHHHHHHHHcCCCc
Confidence            46666555     6888888876    54 4678888988765  899999998653   23444 99999999999999


Q ss_pred             EEEEEcC
Q 017068           80 YLVISGP   86 (378)
Q Consensus        80 ~lvis~p   86 (378)
                      +|++...
T Consensus       217 ~Lvv~~~  223 (298)
T 3fpf_A          217 RIIYRTY  223 (298)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcC
Confidence            9998754

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.01  E-value=1.2e-06  Score=77.08  Aligned_cols=85  Identities=14%  Similarity=0.175  Sum_probs=44.4

Q ss_pred             CccccccccCccccccCCCCCCCCC---CccceeeeecccccCCCeEEEeCC-HHHHHHHHHHHhcCCce-EEEe-cCCC
Q 017068          285 RTYDLIHVSGIESLIKNPGSNKNSC---SLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWT-AAVH-DKEP  358 (378)
Q Consensus       285 rtyDliH~~~~~~~~~~~~~~~~~c---~~~~~l~EmDRiLRPgG~~ii~d~-~~~~~~~~~~~~~l~W~-~~~~-~~~~  358 (378)
                      .+||+|.|+..+.... .......-   ....++-++-|+|+|||.+++..- .+....+...++.. +. +... +...
T Consensus       105 ~~fD~v~~~~~~~~~g-~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~-f~~v~~~~~~~~  182 (201)
T 2plw_A          105 KKIDIILSDAAVPCIG-NKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGM-FQLVHTTKPKAS  182 (201)
T ss_dssp             CCEEEEEECCCCCCCS-CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTT-EEEEEECCCC--
T ss_pred             CcccEEEeCCCcCCCC-CcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHH-HheEEEECCccc
Confidence            6899999976543210 00000000   012367889999999999998531 12233444444443 43 3332 2222


Q ss_pred             CCCCCeEEEEEEe
Q 017068          359 GSNGREKILVATK  371 (378)
Q Consensus       359 ~~~~~e~~l~~~K  371 (378)
                      .+.+.|.++||++
T Consensus       183 r~~s~e~y~v~~~  195 (201)
T 2plw_A          183 RNESREIYLVCKN  195 (201)
T ss_dssp             ---CCEEEEEEEE
T ss_pred             CCcCceEEEEEec
Confidence            2346799999987

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.00  E-value=1.8e-06  Score=82.77  Aligned_cols=135  Identities=18%  Similarity=0.206  Sum_probs=87.0

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCCcchHHHHhh----cc----ccccccccccCCCCCCcccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYDR----GL----IGVYHDWCEPFSTYPRTYDL  289 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~~~l~~i~eR----Gl----ig~~~~w~~~f~typrtyDl  289 (378)
                      +.... .+|+|+|||+|.++..|..+  ..   .++-.|.+..+..+-++    |+    --+-+|..++   +|..||+
T Consensus       164 ~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~D~  236 (334)
T 2ip2_A          164 LDFRG-RSFVDVGGGSGELTKAILQAEPSA---RGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQE---VPSNGDI  236 (334)
T ss_dssp             SCCTT-CEEEEETCTTCHHHHHHHHHCTTC---EEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTC---CCSSCSE
T ss_pred             CCCCC-CEEEEeCCCchHHHHHHHHHCCCC---EEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCC---CCCCCCE
Confidence            34445 89999999999999988743  22   33444444555544332    33    2234455443   5678999


Q ss_pred             ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH-------------H------------HHHHHHHHH
Q 017068          290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-------------E------------VIDKVSRIA  344 (378)
Q Consensus       290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-------------~------------~~~~~~~~~  344 (378)
                      |.+..++..|.     ...|  ..+|-++-|+|+|||+++|.|..             +            ..+++++++
T Consensus       237 v~~~~vl~~~~-----~~~~--~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll  309 (334)
T 2ip2_A          237 YLLSRIIGDLD-----EAAS--LRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLL  309 (334)
T ss_dssp             EEEESCGGGCC-----HHHH--HHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHH
T ss_pred             EEEchhccCCC-----HHHH--HHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHH
Confidence            99999998774     1112  47999999999999999997421             0            244556667


Q ss_pred             hcCCceEEEecCCCCCCCCeEEEEEEe
Q 017068          345 NTVRWTAAVHDKEPGSNGREKILVATK  371 (378)
Q Consensus       345 ~~l~W~~~~~~~~~~~~~~e~~l~~~K  371 (378)
                      +.--++........   +...++.++|
T Consensus       310 ~~aGf~~~~~~~~~---~~~~~i~~~~  333 (334)
T 2ip2_A          310 GRGGFAVERIVDLP---METRMIVAAR  333 (334)
T ss_dssp             HHTTEEEEEEEEET---TTEEEEEEEE
T ss_pred             HHCCCceeEEEECC---CCCEEEEEEe
Confidence            77777754322111   3467888877

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.00  E-value=2.1e-06  Score=77.44  Aligned_cols=130  Identities=13%  Similarity=0.180  Sum_probs=73.0

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh-----cccccccccccc--CCCCCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR-----GLIGVYHDWCEP--FSTYPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR-----Glig~~~~w~~~--f~typrtyDliH~~~  294 (378)
                      .+|||+|||+|.++..|.+.   .-   .|.-.|.+ ..+..+.++     ++.-...|..+.  +...+.+||+|.++.
T Consensus        75 ~~vLDlG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~  151 (227)
T 1g8a_A           75 KSVLYLGIASGTTASHVSDIVGWEG---KIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDV  151 (227)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred             CEEEEEeccCCHHHHHHHHHhCCCe---EEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECC
Confidence            47999999999999888743   12   23444444 444333221     222223343331  223356899999753


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC---------HH--HHHHHHHHHhcCCceEEE-ecCCCCCCC
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS---------PE--VIDKVSRIANTVRWTAAV-HDKEPGSNG  362 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~---------~~--~~~~~~~~~~~l~W~~~~-~~~~~~~~~  362 (378)
                      ...         +  ....++-++-|+|+|||++++.-.         ..  .-++++++ ..- ++... .+.+. ...
T Consensus       152 ~~~---------~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~~~-~~~  217 (227)
T 1g8a_A          152 AQP---------T--QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLNLEP-YEK  217 (227)
T ss_dssp             CST---------T--HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEECTT-TSS
T ss_pred             CCH---------h--HHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEeccCc-ccC
Confidence            310         1  112458899999999999998511         11  12456666 333 77653 33321 123


Q ss_pred             CeEEEEEEec
Q 017068          363 REKILVATKS  372 (378)
Q Consensus       363 ~e~~l~~~K~  372 (378)
                      ..-+++++|+
T Consensus       218 ~~~~~~~~~~  227 (227)
T 1g8a_A          218 DHALFVVRKT  227 (227)
T ss_dssp             SEEEEEEECC
T ss_pred             CCEEEEEEeC
Confidence            4557787774

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.00  E-value=4.7e-06  Score=76.93  Aligned_cols=99  Identities=15%  Similarity=0.148  Sum_probs=59.5

Q ss_pred             eeEEEecCCcceeeeeeccCC--C-eeEEEeccCCC----CcchHHHHhh----cc---ccc-ccc-cc-ccCCCCCCcc
Q 017068          225 IRNIMDMNAFFGGFAAALTSD--P-VWVMNVVPARK----SSTLSVIYDR----GL---IGV-YHD-WC-EPFSTYPRTY  287 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~--~-vwvmnv~p~~~----~~~l~~i~eR----Gl---ig~-~~~-w~-~~f~typrty  287 (378)
                      -..|||+|||.|.++..|..+  + .-|.-+-+...    +.++..+-++    |+   +-+ ..| .. +.+|..+.+|
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~f  123 (275)
T 3bkx_A           44 GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHF  123 (275)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCC
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCE
Confidence            358999999999999988754  1 43333333221    1367655444    32   211 222 22 2222223799


Q ss_pred             ccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          288 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       288 DliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      |+|+|..++....      +   ...++-.+.++++|||++++.+
T Consensus       124 D~v~~~~~l~~~~------~---~~~~~~~~~~l~~~gG~l~~~~  159 (275)
T 3bkx_A          124 DRVVLAHSLWYFA------S---ANALALLFKNMAAVCDHVDVAE  159 (275)
T ss_dssp             SEEEEESCGGGSS------C---HHHHHHHHHHHTTTCSEEEEEE
T ss_pred             EEEEEccchhhCC------C---HHHHHHHHHHHhCCCCEEEEEE
Confidence            9999999987654      1   1344445566666799999964

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.00  E-value=1.9e-06  Score=83.63  Aligned_cols=138  Identities=20%  Similarity=0.226  Sum_probs=86.2

Q ss_pred             CCCCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCCcchHHHHh----hccc----cccccccccCCCCCCccccc
Q 017068          221 GTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYD----RGLI----GVYHDWCEPFSTYPRTYDLI  290 (378)
Q Consensus       221 ~~~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~~~l~~i~e----RGli----g~~~~w~~~f~typrtyDli  290 (378)
                      ....-..|||+|||+|.++..|...  .+   .++-.|.+..+..+-+    .|+-    -+.+|..+++   |..||+|
T Consensus       179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~D~v  252 (374)
T 1qzz_A          179 DWSAVRHVLDVGGGNGGMLAAIALRAPHL---RGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPL---PVTADVV  252 (374)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---SCCEEEE
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHCCCC---EEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcC---CCCCCEE
Confidence            3445679999999999999988754  33   2333343445544433    3432    1334554433   4459999


Q ss_pred             cccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC--H--H-----------------------HHHHHHHH
Q 017068          291 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS--P--E-----------------------VIDKVSRI  343 (378)
Q Consensus       291 H~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~--~--~-----------------------~~~~~~~~  343 (378)
                      .+..++..+.+     ..  ...+|-++-|+|+|||+++|.+.  .  +                       ..++++++
T Consensus       253 ~~~~vl~~~~~-----~~--~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  325 (374)
T 1qzz_A          253 LLSFVLLNWSD-----ED--ALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDL  325 (374)
T ss_dssp             EEESCGGGSCH-----HH--HHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHH
T ss_pred             EEeccccCCCH-----HH--HHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHH
Confidence            99999887641     11  13789999999999999998765  1  1                       23456667


Q ss_pred             HhcCCceEEEe-cCCCCCC--CCeEEEEEEec
Q 017068          344 ANTVRWTAAVH-DKEPGSN--GREKILVATKS  372 (378)
Q Consensus       344 ~~~l~W~~~~~-~~~~~~~--~~e~~l~~~K~  372 (378)
                      ++.--++.... +.. +..  ....++.++|.
T Consensus       326 l~~aGf~~~~~~~~~-~~~~~~~~~~i~~~~~  356 (374)
T 1qzz_A          326 AGSAGLALASERTSG-STTLPFDFSILEFTAV  356 (374)
T ss_dssp             HHTTTEEEEEEEEEC-CSSCSSCEEEEEEEEC
T ss_pred             HHHCCCceEEEEECC-CCcccCCcEEEEEEEC
Confidence            77777776532 322 111  11278888875

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=97.99  E-value=1.8e-06  Score=82.31  Aligned_cols=135  Identities=16%  Similarity=0.241  Sum_probs=86.0

Q ss_pred             CCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCCcchHHHHhh----cccc----ccccccccCCCCCCccccccc
Q 017068          223 PAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYDR----GLIG----VYHDWCEPFSTYPRTYDLIHV  292 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~~~l~~i~eR----Glig----~~~~w~~~f~typrtyDliH~  292 (378)
                      ..-.+|+|+|||+|.++..|.+.  ..   .++-.|.+..++.+-++    |+-+    +.+|..+.  ++|..||+|.|
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~v~~  238 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNA---EIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEV--DYGNDYDLVLL  238 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTS--CCCSCEEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCC---eEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCcEEEE
Confidence            45578999999999999988754  33   44555544445444433    3321    23344331  34556999999


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH----------H-----------------HHHHHHHHHh
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----------E-----------------VIDKVSRIAN  345 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~----------~-----------------~~~~~~~~~~  345 (378)
                      ..++..+.       .-....+|-++-|+|+|||++++.+..          .                 ..++++++++
T Consensus       239 ~~~l~~~~-------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~  311 (335)
T 2r3s_A          239 PNFLHHFD-------VATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFS  311 (335)
T ss_dssp             ESCGGGSC-------HHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHH
T ss_pred             cchhccCC-------HHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHH
Confidence            99988773       112357899999999999999886421          0                 1456677777


Q ss_pred             cCCceEEEecCCCCCCCCeEEEEEEec
Q 017068          346 TVRWTAAVHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       346 ~l~W~~~~~~~~~~~~~~e~~l~~~K~  372 (378)
                      .--++......-.   +...+++++++
T Consensus       312 ~aGf~~~~~~~~~---~~~~~i~~~~~  335 (335)
T 2r3s_A          312 NAGFSHSQLHSLP---TTQQQVIVAYK  335 (335)
T ss_dssp             HTTCSEEEEECCT---TSSSEEEEEEC
T ss_pred             HCCCCeeeEEECC---CCceeEEEecC
Confidence            7777765432211   23467777654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=97.99  E-value=7.8e-06  Score=78.24  Aligned_cols=79  Identities=13%  Similarity=-0.033  Sum_probs=58.5

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcC--CCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcE
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERG--IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGY   80 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg--~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~   80 (378)
                      ..++++++ |.-+..+.-..+ +.+  -.+.+..+|... |+| ++||+|+|..+++||.++. ..+++++.|+|||||+
T Consensus       192 ~~~~~~D~-~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~  267 (334)
T 2ip2_A          192 ARGVMLDR-EGSLGVARDNLS-SLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGR  267 (334)
T ss_dssp             CEEEEEEC-TTCTHHHHHHTH-HHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCE
T ss_pred             CEEEEeCc-HHHHHHHHHHHh-hcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCE
Confidence            35788888 754444332222 112  246788888766 777 6899999999999997654 5899999999999999


Q ss_pred             EEEEcC
Q 017068           81 LVISGP   86 (378)
Q Consensus        81 lvis~p   86 (378)
                      +++...
T Consensus       268 l~i~e~  273 (334)
T 2ip2_A          268 VVVIER  273 (334)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999865

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=97.98  E-value=1.6e-06  Score=84.09  Aligned_cols=137  Identities=15%  Similarity=0.141  Sum_probs=83.9

Q ss_pred             hhcCCCCeeEEEecCCcceeeeeeccC--CCeeEEEeccCCCCcchH--HHHhhccc----cccccccccCCCCCCcccc
Q 017068          218 VKLGTPAIRNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKSSTLS--VIYDRGLI----GVYHDWCEPFSTYPRTYDL  289 (378)
Q Consensus       218 ~~~~~~~iR~vlDm~ag~g~faa~L~~--~~vwvmnv~p~~~~~~l~--~i~eRGli----g~~~~w~~~f~typrtyDl  289 (378)
                      ..+......+|||+|||+|.++.+|.+  ..+   .++-.|.+..+.  .+-+.|+-    =+-+|..++   .| +||+
T Consensus       178 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~---~p-~~D~  250 (348)
T 3lst_A          178 RAGDFPATGTVADVGGGRGGFLLTVLREHPGL---QGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLRE---VP-HADV  250 (348)
T ss_dssp             HHSCCCSSEEEEEETCTTSHHHHHHHHHCTTE---EEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTC---CC-CCSE
T ss_pred             HhCCccCCceEEEECCccCHHHHHHHHHCCCC---EEEEecCHHHhhcccccccCCCCCeEEEecCCCCC---CC-CCcE
Confidence            345566789999999999999998875  233   223233221111  00112331    123444343   45 8999


Q ss_pred             ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH-------------------------HHHHHHHHHH
Q 017068          290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-------------------------EVIDKVSRIA  344 (378)
Q Consensus       290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-------------------------~~~~~~~~~~  344 (378)
                      |.+..++..|.+     .  ....+|-|+-|+|||||.++|.|..                         ...+++++++
T Consensus       251 v~~~~vlh~~~d-----~--~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll  323 (348)
T 3lst_A          251 HVLKRILHNWGD-----E--DSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLF  323 (348)
T ss_dssp             EEEESCGGGSCH-----H--HHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHH
T ss_pred             EEEehhccCCCH-----H--HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHH
Confidence            999999987751     1  1147899999999999999997520                         1245566777


Q ss_pred             hcCCceEEEecCCCCCCCCeEEEEEEe
Q 017068          345 NTVRWTAAVHDKEPGSNGREKILVATK  371 (378)
Q Consensus       345 ~~l~W~~~~~~~~~~~~~~e~~l~~~K  371 (378)
                      +.--++.......   .+...++.++|
T Consensus       324 ~~aGf~~~~~~~~---~~~~~vie~~p  347 (348)
T 3lst_A          324 TAAGLRLDRVVGT---SSVMSIAVGVP  347 (348)
T ss_dssp             HHTTEEEEEEEEC---SSSCEEEEEEE
T ss_pred             HHCCCceEEEEEC---CCCcEEEEEEe
Confidence            7777776543322   23455666654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.98  E-value=3e-06  Score=78.40  Aligned_cols=131  Identities=13%  Similarity=0.119  Sum_probs=73.4

Q ss_pred             eEEEecCCcceeeeeeccCC------CeeEEEeccCCCC-cchHHHHh--hcccccccccccc--CCCCCC-cccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD------PVWVMNVVPARKS-STLSVIYD--RGLIGVYHDWCEP--FSTYPR-TYDLIHVS  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~------~vwvmnv~p~~~~-~~l~~i~e--RGlig~~~~w~~~--f~typr-tyDliH~~  293 (378)
                      ..|||+|||+|.+++.|...      .--   |+-.|.+ ..+..+-.  ..+-=+..|..+.  ++..+. +||+|+++
T Consensus        83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~---V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d  159 (236)
T 2bm8_A           83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQ---VIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFID  159 (236)
T ss_dssp             SEEEEECCTTSHHHHHHHHHHHHTTCCCE---EEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred             CEEEEEeCCCCHHHHHHHHhhhhcCCCCE---EEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEEC
Confidence            58999999999999988653      332   2333322 22222211  1121123344432  232233 69999975


Q ss_pred             CccccccCCCCCCCCCCccceeeeecc-cccCCCeEEEeCCH-----HHHHHHHHHHhcC--CceEEEecCCCCCCCCeE
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDR-MLRPEGTVVVRDSP-----EVIDKVSRIANTV--RWTAAVHDKEPGSNGREK  365 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDR-iLRPgG~~ii~d~~-----~~~~~~~~~~~~l--~W~~~~~~~~~~~~~~e~  365 (378)
                      ..    +        -....+|.|+-| +|+|||++++.+..     .....+.++.+..  .++........-...++.
T Consensus       160 ~~----~--------~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~g  227 (236)
T 2bm8_A          160 NA----H--------ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDMLYANASSQLDRG  227 (236)
T ss_dssp             SS----C--------SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEETTTTTSCTTTTTC
T ss_pred             Cc----h--------HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEEcchhhcccccccch
Confidence            32    1        134678999998 99999999998732     1123667777776  566643211111223455


Q ss_pred             EEEEEe
Q 017068          366 ILVATK  371 (378)
Q Consensus       366 ~l~~~K  371 (378)
                      ++...+
T Consensus       228 ~~~~~~  233 (236)
T 2bm8_A          228 VLRRVA  233 (236)
T ss_dssp             EEEECC
T ss_pred             Hhhhcc
Confidence            655544

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=97.98  E-value=1.8e-06  Score=84.30  Aligned_cols=110  Identities=13%  Similarity=0.142  Sum_probs=67.0

Q ss_pred             HHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCCcchHHHHh----hcc---cccc-ccccccCCC
Q 017068          211 YYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYD----RGL---IGVY-HDWCEPFST  282 (378)
Q Consensus       211 ~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~~~l~~i~e----RGl---ig~~-~~w~~~f~t  282 (378)
                      .|.+.+...+....=..|||+|||+|.++..+...+.  -.|...|.+.++..+-+    .|+   +-+. .|..+ + .
T Consensus        37 ~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~-~  112 (348)
T 2y1w_A           37 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEE-V-S  112 (348)
T ss_dssp             HHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTT-C-C
T ss_pred             HHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhh-C-C
Confidence            3555444333222235899999999999988876543  13344443334444333    254   2222 23332 2 2


Q ss_pred             CCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          283 YPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       283 yprtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      .|..||+|.+...+..+.       .-.+...+.++.|+|+|||.+++.
T Consensus       113 ~~~~~D~Ivs~~~~~~~~-------~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          113 LPEQVDIIISEPMGYMLF-------NERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             CSSCEEEEEECCCBTTBT-------TTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             CCCceeEEEEeCchhcCC-------hHHHHHHHHHHHhhcCCCeEEEEe
Confidence            357899999988776553       122346777999999999999865

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.97  E-value=2.1e-06  Score=86.84  Aligned_cols=72  Identities=19%  Similarity=0.112  Sum_probs=57.7

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCC------CCceeEEEecCccccccCChHHHHHHHhhcccC
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFP------AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP   77 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfp------d~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkP   77 (378)
                      -.|++++++|..     .    .....+.+.++|+..+||.      +++||+|+|.. .+++.+.. .+|+|+.|+|||
T Consensus       248 a~V~GVDiSp~m-----~----~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~-~aL~el~rvLKP  316 (419)
T 3sso_A          248 GQIYGLDIMDKS-----H----VDELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDG-SHINAHVR-TSFAALFPHVRP  316 (419)
T ss_dssp             CEEEEEESSCCG-----G----GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECS-CCCHHHHH-HHHHHHGGGEEE
T ss_pred             CEEEEEECCHHH-----h----hcCCCcEEEEecccccchhhhhhcccCCccEEEECC-cccchhHH-HHHHHHHHhcCC
Confidence            368999999863     1    2334678999999999998      89999999864 45555544 999999999999


Q ss_pred             CcEEEEEcC
Q 017068           78 GGYLVISGP   86 (378)
Q Consensus        78 GG~lvis~p   86 (378)
                      ||+|++...
T Consensus       317 GGvlVi~Dl  325 (419)
T 3sso_A          317 GGLYVIEDM  325 (419)
T ss_dssp             EEEEEEECG
T ss_pred             CeEEEEEec
Confidence            999999744

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=97.97  E-value=8.3e-06  Score=70.26  Aligned_cols=76  Identities=11%  Similarity=0.047  Sum_probs=56.7

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC---eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP---AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP   77 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~---~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkP   77 (378)
                      .|+++++     ++.+++.|+++    +++   +.+..+|... ++++++||+|+|...+++-.+....+++++.|+|||
T Consensus        76 ~v~~~D~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~  149 (194)
T 1dus_A           76 STTMADI-----NRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKD  149 (194)
T ss_dssp             EEEEEES-----CHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEE
T ss_pred             eEEEEEC-----CHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEECCCcccchhHHHHHHHHHHHHcCC
Confidence            3555554     46788888775    444   6778888766 566889999999876654223334899999999999


Q ss_pred             CcEEEEEcC
Q 017068           78 GGYLVISGP   86 (378)
Q Consensus        78 GG~lvis~p   86 (378)
                      ||.+++..+
T Consensus       150 gG~l~~~~~  158 (194)
T 1dus_A          150 NGEIWVVIQ  158 (194)
T ss_dssp             EEEEEEEEE
T ss_pred             CCEEEEEEC
Confidence            999999876

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.95  E-value=1.6e-06  Score=82.28  Aligned_cols=139  Identities=14%  Similarity=0.130  Sum_probs=68.6

Q ss_pred             eEEEecCCcceeeeeeccCC-CeeEEEeccCC--CC-cchHH-HHhhccccc--cccccccCCCCCCccccccccCcccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPAR--KS-STLSV-IYDRGLIGV--YHDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~--~~-~~l~~-i~eRGlig~--~~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      ..|||+|||.|+|+..|..+ .|.-+-+.|.-  +. ..+.. .+..++.-+  -.|-.+ ++  +.+||+|.|+..+..
T Consensus        76 ~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~--~~~fD~V~sd~~~~~  152 (265)
T 2oxt_A           76 GRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHT-LP--VERTDVIMCDVGESS  152 (265)
T ss_dssp             EEEEEESCTTSHHHHHHHTSTTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTT-SC--CCCCSEEEECCCCCC
T ss_pred             CEEEEeCcCCCHHHHHHHHcCcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhH-CC--CCCCcEEEEeCcccC
Confidence            58999999999999888775 34333333320  00 00000 000011111  223222 33  589999999754210


Q ss_pred             ccCCCCCCCCCCccceeeeecccccCCC--eEEEeC----CHHHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEEEEe
Q 017068          299 IKNPGSNKNSCSLVDLMVEMDRMLRPEG--TVVVRD----SPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATK  371 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG--~~ii~d----~~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K  371 (378)
                      -. +.. ...-.+ .+|-++.|+|+|||  .|++..    ...+++.++.+.+.+. .+.+...-.-..+.|.+++|.+
T Consensus       153 ~~-~~~-d~~~~l-~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f~-~v~~~k~~sR~~s~E~y~v~~~  227 (265)
T 2oxt_A          153 PK-WSV-ESERTI-KILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWG-GGLVRNPYSRNSTHEMYFTSRA  227 (265)
T ss_dssp             SC-HHH-HHHHHH-HHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHHC-CEEECCTTSCTTCCCEEEESSC
T ss_pred             Cc-cch-hHHHHH-HHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHcC-CEEEEEecccCCCccEEEEecC
Confidence            00 000 000001 26778999999999  998853    3323344444333221 2222222122346788888754

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=97.93  E-value=2.1e-06  Score=79.53  Aligned_cols=124  Identities=15%  Similarity=0.116  Sum_probs=71.8

Q ss_pred             eeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhh----------cc--cc-ccccccccCC--CCCCc
Q 017068          225 IRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----------GL--IG-VYHDWCEPFS--TYPRT  286 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eR----------Gl--ig-~~~~w~~~f~--typrt  286 (378)
                      -..|||+|||+|.|+..|...  ..   +|+-.|-+ .++..+-++          |+  +- +..|..+.++  ..+.+
T Consensus        47 ~~~vLDiGcG~G~~~~~la~~~p~~---~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~  123 (235)
T 3ckk_A           47 QVEFADIGCGYGGLLVELSPLFPDT---LILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ  123 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHGGGSTTS---EEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred             CCeEEEEccCCcHHHHHHHHHCCCC---eEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence            357999999999999998754  33   56666765 666655432          33  21 2233333233  22479


Q ss_pred             cccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe-CCHHHHHHHHHHHhcC-CceEE
Q 017068          287 YDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTV-RWTAA  352 (378)
Q Consensus       287 yDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-d~~~~~~~~~~~~~~l-~W~~~  352 (378)
                      ||.|.+... ..|........|.....+|-|+-|+|+|||.+++. +.....+.+.+.+... .|+..
T Consensus       124 ~D~v~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~~~  190 (235)
T 3ckk_A          124 LTKMFFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERV  190 (235)
T ss_dssp             EEEEEEESC-C-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEEE
T ss_pred             eeEEEEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCcccc
Confidence            999875311 12210001123333357899999999999999885 6666666665554443 35544

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.92  E-value=1.2e-05  Score=68.97  Aligned_cols=68  Identities=16%  Similarity=0.152  Sum_probs=50.2

Q ss_pred             CCChHHHHHHHHHc----CCC-eEEEEccc-CCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           14 RDSHKAQIQFALER----GIP-AFVAMLGT-RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~~-~~~~v~da-e~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .|.++.+++.|+++    +.+ ..+..+++ +.+|..+++||+|++..++.|    . .+++++.|+|||||+++++..
T Consensus        55 vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~~~~----~-~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A           55 FEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGGLTA----P-GVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             ECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-TTC----T-THHHHHHHTCCTTCEEEEEEC
T ss_pred             EeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCcccH----H-HHHHHHHHhcCCCCEEEEEee
Confidence            35557888888875    444 22555665 344444489999999988766    3 789999999999999999875

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=97.92  E-value=1e-05  Score=73.53  Aligned_cols=76  Identities=11%  Similarity=0.103  Sum_probs=50.6

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCC----CCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRR----LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY   80 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~----LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~   80 (378)
                      .|++++++|..+ +.+++.|+++ .++.+..+|+..    +|++ ++||+|+|.. ..  ++....+++|+.|+|||||+
T Consensus        83 ~V~gvD~s~~~l-~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~-~~--~~~~~~~l~~~~r~LkpgG~  156 (210)
T 1nt2_A           83 IIYAVEYSAKPF-EKLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQDI-AQ--KNQIEILKANAEFFLKEKGE  156 (210)
T ss_dssp             EEEEECCCHHHH-HHHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEECC-CS--TTHHHHHHHHHHHHEEEEEE
T ss_pred             EEEEEECCHHHH-HHHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEEec-cC--hhHHHHHHHHHHHHhCCCCE
Confidence            467777665321 1245566655 356666777766    4666 8999999873 22  22232458999999999999


Q ss_pred             EEEEcC
Q 017068           81 LVISGP   86 (378)
Q Consensus        81 lvis~p   86 (378)
                      |+++.+
T Consensus       157 l~i~~~  162 (210)
T 1nt2_A          157 VVIMVK  162 (210)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999853

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=97.92  E-value=2.8e-06  Score=75.89  Aligned_cols=91  Identities=12%  Similarity=0.086  Sum_probs=59.4

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHh----hcc---ccc-cccccccCCCCCCcccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYD----RGL---IGV-YHDWCEPFSTYPRTYDLIHVS  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~e----RGl---ig~-~~~w~~~f~typrtyDliH~~  293 (378)
                      ++|||+|||+|.++..|...   ..   .|+-.|.+ ..+..+-+    .|+   +-+ ..|..+.++..+. ||+|.++
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~  133 (210)
T 3c3p_A           58 QLVVVPGDGLGCASWWFARAISISS---RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD  133 (210)
T ss_dssp             SEEEEESCGGGHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred             CEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence            58999999999999888754   33   34555544 55554433    243   111 2233333344457 9999876


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ..            ......++-++-|+|||||.+++.+
T Consensus       134 ~~------------~~~~~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A          134 CD------------VFNGADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             TT------------TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred             CC------------hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence            22            2234578889999999999999965

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=97.92  E-value=3.7e-06  Score=76.42  Aligned_cols=132  Identities=14%  Similarity=0.143  Sum_probs=74.3

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cc----hHHHHhh-cccccccccccc--CCCCCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-ST----LSVIYDR-GLIGVYHDWCEP--FSTYPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~----l~~i~eR-Glig~~~~w~~~--f~typrtyDliH~~~  294 (378)
                      ..|||+|||+|.|+..|.+.   .-   .|...|.+ .+    +..+-++ ++--+..|..+.  ++..+.+||+|.++.
T Consensus        79 ~~vLDlG~G~G~~~~~la~~~g~~~---~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~  155 (233)
T 2ipx_A           79 AKVLYLGAASGTTVSHVSDIVGPDG---LVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADV  155 (233)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHCTTC---EEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECC
T ss_pred             CEEEEEcccCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcC
Confidence            47999999999999988754   13   23444544 33    3333332 222233344432  232347899999853


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHH----------HHHHHHHHHhcCCceEEE-ecCCCCCCCC
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPE----------VIDKVSRIANTVRWTAAV-HDKEPGSNGR  363 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~----------~~~~~~~~~~~l~W~~~~-~~~~~~~~~~  363 (378)
                      . ..        +  ....++.|+-|+|+|||.+++.-...          .+.+-.++++..-++... .+.+.- ..+
T Consensus       156 ~-~~--------~--~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~-~~~  223 (233)
T 2ipx_A          156 A-QP--------D--QTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPY-ERD  223 (233)
T ss_dssp             C-CT--------T--HHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECTTT-SSS
T ss_pred             C-Cc--------c--HHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecCCc-cCC
Confidence            3 10        1  11235677999999999999963221          122223556666787654 333321 234


Q ss_pred             eEEEEEEec
Q 017068          364 EKILVATKS  372 (378)
Q Consensus       364 e~~l~~~K~  372 (378)
                      .-+++++|+
T Consensus       224 ~~~v~~~~~  232 (233)
T 2ipx_A          224 HAVVVGVYR  232 (233)
T ss_dssp             EEEEEEEEC
T ss_pred             cEEEEEEeC
Confidence            566677653

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=97.92  E-value=7.8e-06  Score=77.71  Aligned_cols=71  Identities=17%  Similarity=0.038  Sum_probs=53.1

Q ss_pred             CChHHHHHHHHHcCCCeEEEEcccCCCCC-----CCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcCC
Q 017068           15 DSHKAQIQFALERGIPAFVAMLGTRRLPF-----PAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGPP   87 (378)
Q Consensus        15 D~se~~vq~A~erg~~~~~~v~dae~LPf-----pd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~pp   87 (378)
                      |.|+.|++.|+++.... ...++.+.+++     .+++||+|+|+.+++|+...+ ..+++++.|+| |||.++++.+.
T Consensus        74 D~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A           74 DFSQRMCDDLAEALADR-CVTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             ESCHHHHHHHHHHTSSS-CCEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             ECCHHHHHHHHHHHHhc-cceeeeeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence            45579999999974322 22334444443     267999999999999986543 47999999999 99999999763

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=97.92  E-value=1.9e-05  Score=77.19  Aligned_cols=78  Identities=12%  Similarity=0.159  Sum_probs=55.3

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCCC--eEEEEcccCCCCCCCCceeEEEecCccccc--cCChHHHHHHHhhcccCCcE
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPF--TAYNATYLIEVDRLLRPGGY   80 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw--~~~~~~~L~Ev~RVLkPGG~   80 (378)
                      .|+++++++  .-+...+.+++.+..  +.+..++++.+++++++||+|+|....++.  ......++.++.|+|||||+
T Consensus        91 ~v~gvD~s~--~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~  168 (349)
T 3q7e_A           91 KVIGIECSS--ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGL  168 (349)
T ss_dssp             EEEEEECST--HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEE
T ss_pred             EEEEECcHH--HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCE
Confidence            577777763  222222333444655  788999999999999999999996543322  23334899999999999999


Q ss_pred             EEEE
Q 017068           81 LVIS   84 (378)
Q Consensus        81 lvis   84 (378)
                      ++..
T Consensus       169 li~~  172 (349)
T 3q7e_A          169 IFPD  172 (349)
T ss_dssp             EESC
T ss_pred             Eccc
Confidence            9843

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.91  E-value=2.4e-06  Score=78.91  Aligned_cols=88  Identities=14%  Similarity=0.116  Sum_probs=61.2

Q ss_pred             eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhhcc-cc-ccccccccCCCCCCccccccccCcccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDRGL-IG-VYHDWCEPFSTYPRTYDLIHVSGIESLIK  300 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eRGl-ig-~~~~w~~~f~typrtyDliH~~~~~~~~~  300 (378)
                      ..|||+|||.|.++..|...  ..   +|+-.|.+ ..+..+-+++- +- ...|.. .++.-+.+||+|.+...     
T Consensus        87 ~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~-----  157 (269)
T 1p91_A           87 TAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASSH-RLPFSDTSMDAIIRIYA-----  157 (269)
T ss_dssp             CEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCTT-SCSBCTTCEEEEEEESC-----
T ss_pred             CEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhCCCcEEEEcchh-hCCCCCCceeEEEEeCC-----
Confidence            57999999999999888765  33   45666665 78888777762 11 122222 23323379999997422     


Q ss_pred             CCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       301 ~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                                 ...+-|+-|+|||||.+++...
T Consensus       158 -----------~~~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          158 -----------PCKAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             -----------CCCHHHHHHHEEEEEEEEEEEE
T ss_pred             -----------hhhHHHHHHhcCCCcEEEEEEc
Confidence                       2367899999999999998753

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=97.90  E-value=5.2e-07  Score=82.16  Aligned_cols=97  Identities=15%  Similarity=-0.014  Sum_probs=66.0

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc---c-ccccccccc-C-CCCC--CccccccccCcc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL---I-GVYHDWCEP-F-STYP--RTYDLIHVSGIE  296 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl---i-g~~~~w~~~-f-~typ--rtyDliH~~~~~  296 (378)
                      ..|||+|||+|.++..|....-   +|+-.|.+ .++..+-++--   + -+..|..+. + ..++  ..||+|.+..++
T Consensus        58 ~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~  134 (245)
T 3ggd_A           58 LPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGF  134 (245)
T ss_dssp             SCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSS
T ss_pred             CeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchh
Confidence            4699999999999999876543   56777766 77777766532   1 112222221 0 0111  248999999888


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ....       .-....+|-|+-|+|+|||++++.+
T Consensus       135 ~~~~-------~~~~~~~l~~~~~~LkpgG~l~i~~  163 (245)
T 3ggd_A          135 HHIP-------VEKRELLGQSLRILLGKQGAMYLIE  163 (245)
T ss_dssp             TTSC-------GGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             hcCC-------HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            7653       2234689999999999999988875

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.88  E-value=6.5e-06  Score=75.45  Aligned_cols=126  Identities=14%  Similarity=0.090  Sum_probs=75.4

Q ss_pred             EEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHh----hccc----cc-cccccccCCCC-CCccccccc
Q 017068          227 NIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYD----RGLI----GV-YHDWCEPFSTY-PRTYDLIHV  292 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~e----RGli----g~-~~~w~~~f~ty-prtyDliH~  292 (378)
                      .|||+|||+|.++..|...   .-   .|+-.|.. ..+.++-+    .|+-    -+ ..|-.+.++.. +.+||+|.+
T Consensus        59 ~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~  135 (221)
T 3dr5_A           59 GAIAITPAAGLVGLYILNGLADNT---TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG  135 (221)
T ss_dssp             EEEEESTTHHHHHHHHHHHSCTTS---EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred             CEEEEcCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence            8999999999998887642   33   34555544 55544422    2332    11 12222333444 479999987


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH------------HHHHHHHHHHhcCCc----eEEEecC
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP------------EVIDKVSRIANTVRW----TAAVHDK  356 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~------------~~~~~~~~~~~~l~W----~~~~~~~  356 (378)
                      +....            ....++-++-|+|||||.+++.+..            .....++++.+.+++    +......
T Consensus       136 d~~~~------------~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~  203 (221)
T 3dr5_A          136 QVSPM------------DLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPL  203 (221)
T ss_dssp             CCCTT------------THHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESS
T ss_pred             cCcHH------------HHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeec
Confidence            64322            2245788889999999999996521            223344555444444    4444432


Q ss_pred             CCCCCCCeEEEEEEecC
Q 017068          357 EPGSNGREKILVATKSL  373 (378)
Q Consensus       357 ~~~~~~~e~~l~~~K~~  373 (378)
                            .+++++++|.+
T Consensus       204 ------gdGl~~~~~~~  214 (221)
T 3dr5_A          204 ------GAGLTVVTKAL  214 (221)
T ss_dssp             ------TTCEEEEEECC
T ss_pred             ------cchHHHHHHHH
Confidence                  45799999875

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.88  E-value=2.2e-06  Score=77.22  Aligned_cols=89  Identities=11%  Similarity=0.138  Sum_probs=62.4

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc-----cccccccccccCCCCCCccccccccCccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG-----LIGVYHDWCEPFSTYPRTYDLIHVSGIESLI  299 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG-----lig~~~~w~~~f~typrtyDliH~~~~~~~~  299 (378)
                      ..|||+|||.|.++..|.....   +|+-.|.+ ..+..+-++.     +--+..|..+.++ .+.+||+|.+...+...
T Consensus        72 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~~~  147 (231)
T 1vbf_A           72 QKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-EEKPYDRVVVWATAPTL  147 (231)
T ss_dssp             CEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-GGCCEEEEEESSBBSSC
T ss_pred             CEEEEEcCCCCHHHHHHHHHcC---EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc-cCCCccEEEECCcHHHH
Confidence            4899999999999999987653   56666655 6776666652     2222334444332 24789999998776533


Q ss_pred             cCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          300 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       300 ~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                                     .-|+-|+|+|||.+++...
T Consensus       148 ---------------~~~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          148 ---------------LCKPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             ---------------CHHHHHTEEEEEEEEEEEC
T ss_pred             ---------------HHHHHHHcCCCcEEEEEEc
Confidence                           2378899999999999854

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.88  E-value=6.2e-07  Score=81.61  Aligned_cols=93  Identities=14%  Similarity=0.178  Sum_probs=64.7

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCCCCCCccccccccCcc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFSTYPRTYDLIHVSGIE  296 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~typrtyDliH~~~~~  296 (378)
                      ..|||+|||+|+++..|.....   .|+-.|.+ ..+..+-++    |+   +- +..|..+ ++ .+.+||+|.++..|
T Consensus        80 ~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~D~v~~~~~~  154 (241)
T 3gdh_A           80 DVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLL-LA-SFLKADVVFLSPPW  154 (241)
T ss_dssp             SEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH-HG-GGCCCSEEEECCCC
T ss_pred             CEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHH-hc-ccCCCCEEEECCCc
Confidence            4799999999999999988764   66777765 666555443    33   21 2233333 22 24799999998777


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ....         .....+.|+-|+|+|||++++..
T Consensus       155 ~~~~---------~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          155 GGPD---------YATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             SSGG---------GGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             CCcc---------hhhhHHHHHHhhcCCcceeHHHH
Confidence            6543         12347789999999999988764

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=97.87  E-value=1.9e-05  Score=77.32  Aligned_cols=67  Identities=13%  Similarity=0.123  Sum_probs=55.1

Q ss_pred             HHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           18 KAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        18 e~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +.+++.|+++    ++  .+.+..+|.. .|+|. .||+|+|..+++||.++. .++|+++.|+|||||++++...
T Consensus       235 ~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~  308 (369)
T 3gwz_A          235 PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDN  308 (369)
T ss_dssp             HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred             HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            4777777764    33  3778888886 68887 899999999999998765 4799999999999999999754

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=97.87  E-value=1.5e-06  Score=79.52  Aligned_cols=123  Identities=11%  Similarity=0.117  Sum_probs=71.1

Q ss_pred             eeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHh----hccc--c-ccccccccCC--CCCCccccccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYD----RGLI--G-VYHDWCEPFS--TYPRTYDLIHV  292 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~e----RGli--g-~~~~w~~~f~--typrtyDliH~  292 (378)
                      -..|||+|||+|.++..|...  ..   +|+-.|.+ ..+..+.+    .|+-  - +..|-.+.++  .-+.+||+|++
T Consensus        35 ~~~vLDiGcG~G~~~~~lA~~~p~~---~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~  111 (218)
T 3dxy_A           35 APVTLEIGFGMGASLVAMAKDRPEQ---DFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQL  111 (218)
T ss_dssp             CCEEEEESCTTCHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred             CCeEEEEeeeChHHHHHHHHHCCCC---eEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEE
Confidence            457999999999999988743  34   45666765 66655443    3542  1 1223222222  12489999987


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe-CCHHHHHHHHHHHhc-CCceE
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANT-VRWTA  351 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-d~~~~~~~~~~~~~~-l~W~~  351 (378)
                      .... .|........|-.-..++-|+-|+|+|||.+++. |...+.+.+.+++.. -.|+.
T Consensus       112 ~~~~-p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~~~  171 (218)
T 3dxy_A          112 FFPD-PWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKN  171 (218)
T ss_dssp             ESCC-CCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEE
T ss_pred             eCCC-CccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCccc
Confidence            5221 2210000000111124888999999999999887 445566666665443 24443

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=97.86  E-value=2.2e-05  Score=72.65  Aligned_cols=77  Identities=21%  Similarity=0.186  Sum_probs=54.5

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHc----------CC-CeEEEEcccCC-CC--CCCCceeEEEecCccccccCC------
Q 017068            4 ENILTLSFAPRDSHKAQIQFALER----------GI-PAFVAMLGTRR-LP--FPAFSFDIVHCSRCLIPFTAY------   63 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~er----------g~-~~~~~v~dae~-LP--fpd~SFD~V~cs~~l~hw~~~------   63 (378)
                      .+|++++++     +.|++.|+++          +. ++.+..+|+.. +|  |++++||.|++.+.- +|...      
T Consensus        71 ~~v~GiDis-----~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~v~~~~~d-p~~k~~h~krr  144 (235)
T 3ckk_A           71 TLILGLEIR-----VKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPD-PHFKRTKHKWR  144 (235)
T ss_dssp             SEEEEEESC-----HHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEEEEEESCC------------
T ss_pred             CeEEEEECC-----HHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeEEEEeCCC-chhhhhhhhhh
Confidence            356777665     5777777642          33 46788889876 78  899999999875432 33211      


Q ss_pred             --hHHHHHHHhhcccCCcEEEEEcC
Q 017068           64 --NATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        64 --~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                        ...+++++.|+|||||.|++.+.
T Consensus       145 ~~~~~~l~~~~~~LkpGG~l~~~td  169 (235)
T 3ckk_A          145 IISPTLLAEYAYVLRVGGLVYTITD  169 (235)
T ss_dssp             CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred             hhhHHHHHHHHHHCCCCCEEEEEeC
Confidence              02699999999999999999764

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=97.86  E-value=2.3e-06  Score=80.05  Aligned_cols=132  Identities=11%  Similarity=0.121  Sum_probs=72.8

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cch----HHHHhh-ccccccccccccC--CCCCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STL----SVIYDR-GLIGVYHDWCEPF--STYPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l----~~i~eR-Glig~~~~w~~~f--~typrtyDliH~~~  294 (378)
                      -.|||+|||+|++++.|.+.   .-   .|...|.+ .++    ..+-+| .+.-+..|-+.+.  ...+.+||+|.++-
T Consensus        78 ~~VLDlG~GtG~~t~~la~~v~~~G---~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~  154 (232)
T 3id6_C           78 TKVLYLGAASGTTISHVSDIIELNG---KAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDI  154 (232)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHTTTS---EEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECC
T ss_pred             CEEEEEeecCCHHHHHHHHHhCCCC---EEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecC
Confidence            57999999999999887642   22   23555544 443    333333 2333445544331  12246899998863


Q ss_pred             ccccccCCCCCCCCCCccceee-eecccccCCCeEEEeCC----------HHHHHHHHHHHhcCCceEEE-ecCCCCCCC
Q 017068          295 IESLIKNPGSNKNSCSLVDLMV-EMDRMLRPEGTVVVRDS----------PEVIDKVSRIANTVRWTAAV-HDKEPGSNG  362 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~-EmDRiLRPgG~~ii~d~----------~~~~~~~~~~~~~l~W~~~~-~~~~~~~~~  362 (378)
                      .+.            ....+|+ .+.|+|+|||.+++.-.          .++...+.+.+++--.+... .+.++ -..
T Consensus       155 a~~------------~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p-~~~  221 (232)
T 3id6_C          155 AQP------------DQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDP-YDK  221 (232)
T ss_dssp             CCT------------THHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTT-TCS
T ss_pred             CCh------------hHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCC-CcC
Confidence            321            1234444 56779999999998621          12223333333333454432 33432 124


Q ss_pred             CeEEEEEEecC
Q 017068          363 REKILVATKSL  373 (378)
Q Consensus       363 ~e~~l~~~K~~  373 (378)
                      +.-+++++|++
T Consensus       222 ~h~~v~~~~~~  232 (232)
T 3id6_C          222 DHAIVLSKYKG  232 (232)
T ss_dssp             SCEEEEEEEC-
T ss_pred             ceEEEEEEeCC
Confidence            67888888864

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=97.86  E-value=1.6e-05  Score=79.16  Aligned_cols=73  Identities=15%  Similarity=0.147  Sum_probs=57.8

Q ss_pred             CChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccc----cCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF----TAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw----~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |+|+.+++.|+++    ++.+.+..+|+...++++++||+|+|+..+++-    .+....+++++.|+|||||+++++..
T Consensus       262 Dis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n  341 (381)
T 3dmg_A          262 EDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN  341 (381)
T ss_dssp             ESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence            4456888888774    556788899999988888999999998877551    12224889999999999999999876


Q ss_pred             C
Q 017068           87 P   87 (378)
Q Consensus        87 p   87 (378)
                      +
T Consensus       342 ~  342 (381)
T 3dmg_A          342 P  342 (381)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=97.85  E-value=6.6e-06  Score=75.26  Aligned_cols=76  Identities=16%  Similarity=0.188  Sum_probs=56.2

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCC-C--CCCCceeEEEecCccccccCChH--------HHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRL-P--FPAFSFDIVHCSRCLIPFTAYNA--------TYL   68 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~L-P--fpd~SFD~V~cs~~l~hw~~~~~--------~~L   68 (378)
                      +|++++++     +.+++.|+++    ++ ++.+..+|+..+ +  |++++||.|++.+. -+|+....        .++
T Consensus        60 ~v~giD~s-----~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~-~p~~~~~~~~rr~~~~~~l  133 (218)
T 3dxy_A           60 DFLGIEVH-----SPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFP-DPWHKARHNKRRIVQVPFA  133 (218)
T ss_dssp             EEEEECSC-----HHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESC-CCCCSGGGGGGSSCSHHHH
T ss_pred             eEEEEEec-----HHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCC-CCccchhhhhhhhhhHHHH
Confidence            46666555     6777777664    44 467888888774 4  89999999998754 34544321        499


Q ss_pred             HHHhhcccCCcEEEEEcC
Q 017068           69 IEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        69 ~Ev~RVLkPGG~lvis~p   86 (378)
                      +++.|+|||||+|++++.
T Consensus       134 ~~~~r~LkpGG~l~i~td  151 (218)
T 3dxy_A          134 ELVKSKLQLGGVFHMATD  151 (218)
T ss_dssp             HHHHHHEEEEEEEEEEES
T ss_pred             HHHHHHcCCCcEEEEEeC
Confidence            999999999999999875

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=97.85  E-value=3.5e-06  Score=81.91  Aligned_cols=101  Identities=13%  Similarity=0.230  Sum_probs=67.5

Q ss_pred             hcCCCCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCCcchHHHHhh----cccc----ccccccccCCCCCCccc
Q 017068          219 KLGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYDR----GLIG----VYHDWCEPFSTYPRTYD  288 (378)
Q Consensus       219 ~~~~~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~~~l~~i~eR----Glig----~~~~w~~~f~typrtyD  288 (378)
                      .+....-..|||+|||+|.++..|.++  ..   .++-.|.+..+..+-++    |+-+    +-+|..+.  ++|. +|
T Consensus       185 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~-~D  258 (359)
T 1x19_A          185 EAKLDGVKKMIDVGGGIGDISAAMLKHFPEL---DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE--SYPE-AD  258 (359)
T ss_dssp             HCCCTTCCEEEEESCTTCHHHHHHHHHCTTC---EEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTS--CCCC-CS
T ss_pred             hcCCCCCCEEEEECCcccHHHHHHHHHCCCC---eEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccC--CCCC-CC
Confidence            344556789999999999999998754  33   23333445556555443    5422    23344332  2343 49


Q ss_pred             cccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          289 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       289 liH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      +|.+..++..|.       .-....+|-++-|+|+|||.++|.+
T Consensus       259 ~v~~~~vlh~~~-------d~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          259 AVLFCRILYSAN-------EQLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             EEEEESCGGGSC-------HHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             EEEEechhccCC-------HHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            999999998774       1123678999999999999998865

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.85  E-value=1.5e-06  Score=79.96  Aligned_cols=98  Identities=12%  Similarity=0.033  Sum_probs=55.1

Q ss_pred             eEEEecCCcceeeeeecc--CCCeeEEEeccCCCC--cchHHH---H----hhccccc--cccccccCCC-CCCcccccc
Q 017068          226 RNIMDMNAFFGGFAAALT--SDPVWVMNVVPARKS--STLSVI---Y----DRGLIGV--YHDWCEPFST-YPRTYDLIH  291 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~--~~~vwvmnv~p~~~~--~~l~~i---~----eRGlig~--~~~w~~~f~t-yprtyDliH  291 (378)
                      ..|||+|||.|.++..|.  ....   +|+-.|.+  ..|+.+   .    ++|+-.+  ...=.+.+|. +...+|.++
T Consensus        26 ~~vLDiGCG~G~~~~~la~~~~~~---~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~  102 (225)
T 3p2e_A           26 RVHIDLGTGDGRNIYKLAINDQNT---FYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS  102 (225)
T ss_dssp             EEEEEETCTTSHHHHHHHHTCTTE---EEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred             CEEEEEeccCcHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence            679999999999999987  4555   56666755  444444   3    3454221  1111122322 124455555


Q ss_pred             ccCccccccCCCCCCCCCCccceeeeecccccCCCeEEE
Q 017068          292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV  330 (378)
Q Consensus       292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii  330 (378)
                      +...+....    ...+-....+|-|+-|+|||||.+++
T Consensus       103 ~~~~~~~~~----~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A          103 ILFPWGTLL----EYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             EESCCHHHH----HHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             EeCCCcHHh----hhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            432111000    00011124578999999999999999

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.84  E-value=3.4e-06  Score=74.90  Aligned_cols=90  Identities=16%  Similarity=0.115  Sum_probs=61.8

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc--cc-ccccccccCCCCCCccccccccCcc
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL--IG-VYHDWCEPFSTYPRTYDLIHVSGIE  296 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig-~~~~w~~~f~typrtyDliH~~~~~  296 (378)
                      -..|||+|||+|.++..|.....   +|.-.|.+ ..+..+-++    |+  +- ...|..+.++ -+.+||+|.++..+
T Consensus        78 ~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~i~~~~~~  153 (210)
T 3lbf_A           78 QSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ-ARAPFDAIIVTAAP  153 (210)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-GGCCEEEEEESSBC
T ss_pred             CCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc-cCCCccEEEEccch
Confidence            35899999999999999987644   55666655 666665554    43  21 2233433222 24789999998776


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      ....               -++-|+|+|||.+++.-.
T Consensus       154 ~~~~---------------~~~~~~L~pgG~lv~~~~  175 (210)
T 3lbf_A          154 PEIP---------------TALMTQLDEGGILVLPVG  175 (210)
T ss_dssp             SSCC---------------THHHHTEEEEEEEEEEEC
T ss_pred             hhhh---------------HHHHHhcccCcEEEEEEc
Confidence            6443               267899999999999744

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=97.84  E-value=2e-05  Score=76.41  Aligned_cols=67  Identities=28%  Similarity=0.336  Sum_probs=53.6

Q ss_pred             HHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           18 KAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        18 e~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +.+++.|+++    ++  .+.+..+|... ++|.+ ||+|+|..+++||.++. ..+++++.|+|||||++++...
T Consensus       215 ~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~-~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          215 AGPAERARRRFADAGLADRVTVAEGDFFK-PLPVT-ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCCC-CCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            4778877764    44  37788888754 55554 99999999999998764 4899999999999999998765

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=97.84  E-value=2.3e-05  Score=70.52  Aligned_cols=78  Identities=13%  Similarity=0.086  Sum_probs=55.4

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHc----CCCeEEEEcccCC-CCCCCCceeEEEecCccccccCC---------------
Q 017068            4 ENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAY---------------   63 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~er----g~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~---------------   63 (378)
                      ..|+++++.     +.+++.|+++    ++.+.+..+|+.. .++++++||+|+|+-.+++..+.               
T Consensus        80 ~~v~~vD~s-----~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~  154 (230)
T 3evz_A           80 CKVTATEVD-----EEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYG  154 (230)
T ss_dssp             CEEEEEECC-----HHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC---------------CCSSS
T ss_pred             CEEEEEECC-----HHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCCcCCccccccChhhhhccCccc
Confidence            345666655     6788887764    5567888888643 46788999999998655443221               


Q ss_pred             ---hHHHHHHHhhcccCCcEEEEEcC
Q 017068           64 ---NATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        64 ---~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                         ...+++++.|+|||||++++..+
T Consensus       155 ~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (230)
T 3evz_A          155 EEFSVKLLEEAFDHLNPGGKVALYLP  180 (230)
T ss_dssp             CHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             hHHHHHHHHHHHHHhCCCeEEEEEec
Confidence               13789999999999999999754

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.84  E-value=6.9e-06  Score=75.23  Aligned_cols=104  Identities=13%  Similarity=0.129  Sum_probs=71.5

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----cccc----ccccccccCCCCCCcccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GLIG----VYHDWCEPFSTYPRTYDLIHVS  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Glig----~~~~w~~~f~typrtyDliH~~  293 (378)
                      .+|||+|||+|.++.+|...   ..   .|+-.|.+ ..+..+-++    |+-.    ...|..+.|+  +.+||+|.++
T Consensus        95 ~~vldiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~v~~~  169 (255)
T 3mb5_A           95 DFIVEAGVGSGALTLFLANIVGPEG---RVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE--EENVDHVILD  169 (255)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC--CCSEEEEEEC
T ss_pred             CEEEEecCCchHHHHHHHHHhCCCe---EEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC--CCCcCEEEEC
Confidence            57999999999999998765   44   44556655 666666554    5422    3455666544  3689999873


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-HHHHHHHHHHHhcCC
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVR  348 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-~~~~~~~~~~~~~l~  348 (378)
                      .              -....++-++-|+|+|||.+++... .+...++.+.++...
T Consensus       170 ~--------------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g  211 (255)
T 3mb5_A          170 L--------------PQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK  211 (255)
T ss_dssp             S--------------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred             C--------------CCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            1              1124689999999999999998764 455666666555544

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.84  E-value=1.8e-05  Score=72.14  Aligned_cols=71  Identities=13%  Similarity=0.067  Sum_probs=57.2

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc-----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER-----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er-----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG   78 (378)
                      .|+++++.     +.+++.|+++     |. .+.+..+|+..+|+++++||+|++     ++++.. .+++++.|+||||
T Consensus       123 ~v~~~D~~-----~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~-----~~~~~~-~~l~~~~~~L~~g  191 (258)
T 2pwy_A          123 LVESYEAR-----PHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVAL-----DLMEPW-KVLEKAALALKPD  191 (258)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEE-----ESSCGG-GGHHHHHHHEEEE
T ss_pred             EEEEEeCC-----HHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEE-----CCcCHH-HHHHHHHHhCCCC
Confidence            45666554     6888888776     53 467888899888999999999997     455655 8999999999999


Q ss_pred             cEEEEEcC
Q 017068           79 GYLVISGP   86 (378)
Q Consensus        79 G~lvis~p   86 (378)
                      |++++..+
T Consensus       192 G~l~~~~~  199 (258)
T 2pwy_A          192 RFLVAYLP  199 (258)
T ss_dssp             EEEEEEES
T ss_pred             CEEEEEeC
Confidence            99999876

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=97.84  E-value=4.8e-06  Score=80.54  Aligned_cols=140  Identities=22%  Similarity=0.309  Sum_probs=86.3

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCCcchHHHHh----hccc----cccccccccCCCCCCcccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYD----RGLI----GVYHDWCEPFSTYPRTYDL  289 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~~~l~~i~e----RGli----g~~~~w~~~f~typrtyDl  289 (378)
                      +....-.+|||+|||+|.++.+|...  .+   .++-.|.+..+..+-+    .|+-    -+.+|..+++   |..||+
T Consensus       179 ~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~D~  252 (360)
T 1tw3_A          179 YDWTNVRHVLDVGGGKGGFAAAIARRAPHV---SATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---PRKADA  252 (360)
T ss_dssp             SCCTTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---SSCEEE
T ss_pred             CCCccCcEEEEeCCcCcHHHHHHHHhCCCC---EEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCC---CCCccE
Confidence            34445678999999999999888643  33   2233333445544433    3331    2344555543   456999


Q ss_pred             ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH--------H------------------HHHHHHHH
Q 017068          290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP--------E------------------VIDKVSRI  343 (378)
Q Consensus       290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~--------~------------------~~~~~~~~  343 (378)
                      +.+..++..+.+     .  ....+|-++-|+|+|||.+++.+..        .                  ..++++++
T Consensus       253 v~~~~vl~~~~~-----~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l  325 (360)
T 1tw3_A          253 IILSFVLLNWPD-----H--DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGL  325 (360)
T ss_dssp             EEEESCGGGSCH-----H--HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHH
T ss_pred             EEEcccccCCCH-----H--HHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHH
Confidence            999999887641     1  1146899999999999999987532        0                  13456667


Q ss_pred             HhcCCceEEEecCCCCC--CCCeEEEEEEec
Q 017068          344 ANTVRWTAAVHDKEPGS--NGREKILVATKS  372 (378)
Q Consensus       344 ~~~l~W~~~~~~~~~~~--~~~e~~l~~~K~  372 (378)
                      ++.--++......-.+.  .....++.|+|+
T Consensus       326 l~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~  356 (360)
T 1tw3_A          326 AASAGLVVEEVRQLPSPTIPYDLSLLVLAPA  356 (360)
T ss_dssp             HHHTTEEEEEEEEEECSSSSCEEEEEEEEEC
T ss_pred             HHHCCCeEEEEEeCCCCcccCccEEEEEEeC
Confidence            77777776543221110  011578888875

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.83  E-value=1.9e-05  Score=70.02  Aligned_cols=71  Identities=14%  Similarity=0.037  Sum_probs=56.5

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      .|+++++.     +.+++.|+++    +.+ +.+..+|+...+.++++||+|++..+++|+++       ++.++|||||
T Consensus       101 ~v~~vD~~-----~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~-------~~~~~L~pgG  168 (210)
T 3lbf_A          101 HVCSVERI-----KGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPT-------ALMTQLDEGG  168 (210)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBCSSCCT-------HHHHTEEEEE
T ss_pred             EEEEEecC-----HHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccchhhhhH-------HHHHhcccCc
Confidence            45555554     6888888875    443 67888898888778899999999988877654       6899999999


Q ss_pred             EEEEEcCC
Q 017068           80 YLVISGPP   87 (378)
Q Consensus        80 ~lvis~pp   87 (378)
                      +++++.++
T Consensus       169 ~lv~~~~~  176 (210)
T 3lbf_A          169 ILVLPVGE  176 (210)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEcC
Confidence            99998874

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=97.83  E-value=7.4e-06  Score=76.01  Aligned_cols=130  Identities=10%  Similarity=0.180  Sum_probs=74.2

Q ss_pred             eeEEEecCCcceeeeeeccC---CC--eeEEEeccCCCCcchHHHHhhccc---cc-cccccccCCCC-----CCccccc
Q 017068          225 IRNIMDMNAFFGGFAAALTS---DP--VWVMNVVPARKSSTLSVIYDRGLI---GV-YHDWCEPFSTY-----PRTYDLI  290 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~---~~--vwvmnv~p~~~~~~l~~i~eRGli---g~-~~~w~~~f~ty-----prtyDli  290 (378)
                      -++|||+|||+|.++..|..   ..  |..+-+.|.-....-+.+-..|+-   -+ ..|-.+.++..     +.+||+|
T Consensus        61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V  140 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI  140 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred             cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence            46899999999999888864   23  322222222111122333334542   11 22333333333     4789999


Q ss_pred             cccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH------------HHHHHHHH----HHhcCCceEEEe
Q 017068          291 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP------------EVIDKVSR----IANTVRWTAAVH  354 (378)
Q Consensus       291 H~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~------------~~~~~~~~----~~~~l~W~~~~~  354 (378)
                      .++.....+            ..++-++-|+|||||.+++.+..            .....+++    +...=+++..+.
T Consensus       141 ~~d~~~~~~------------~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  208 (242)
T 3r3h_A          141 FIDADKTNY------------LNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLL  208 (242)
T ss_dssp             EEESCGGGH------------HHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEE
T ss_pred             EEcCChHHh------------HHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEE
Confidence            886543322            35677888999999999997521            12223333    344445666655


Q ss_pred             cCCCCCCCCeEEEEEEec
Q 017068          355 DKEPGSNGREKILVATKS  372 (378)
Q Consensus       355 ~~~~~~~~~e~~l~~~K~  372 (378)
                      ..      .+++++++|+
T Consensus       209 p~------~dG~~~~~k~  220 (242)
T 3r3h_A          209 AI------ADGMFLVQPI  220 (242)
T ss_dssp             SS------SSCEEEEEEC
T ss_pred             Ec------cCceEEEEEc
Confidence            43      3568888875

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.83  E-value=5.3e-07  Score=76.80  Aligned_cols=94  Identities=15%  Similarity=0.137  Sum_probs=59.7

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc-cc-ccccccccCCCC---CCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IG-VYHDWCEPFSTY---PRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig-~~~~w~~~f~ty---prtyDliH~~~~  295 (378)
                      .+|||+|||+|.++..|.....   +|+-.|.+ ..+..+-++    |+ +- ...|..+..+..   +.+||+|.++..
T Consensus        43 ~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~  119 (171)
T 1ws6_A           43 GRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP  119 (171)
T ss_dssp             CEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCC
Confidence            4799999999999998876654   36667765 566554442    32 11 122333322222   237999999866


Q ss_pred             cccccCCCCCCCCCCccceeeeec--ccccCCCeEEEeCC
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMD--RMLRPEGTVVVRDS  333 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmD--RiLRPgG~~ii~d~  333 (378)
                      |.  .         ....++-++-  |+|+|||.+++...
T Consensus       120 ~~--~---------~~~~~~~~~~~~~~L~~gG~~~~~~~  148 (171)
T 1ws6_A          120 YA--M---------DLAALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             TT--S---------CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             Cc--h---------hHHHHHHHHHhhcccCCCcEEEEEeC
Confidence            54  1         1134555555  99999999999754

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.81  E-value=1.4e-05  Score=70.09  Aligned_cols=72  Identities=14%  Similarity=0.151  Sum_probs=54.0

Q ss_pred             CChHHHHHHHHHc----CC--CeEEEEcccCCCC-CCCCceeEEEecCccccccC--------ChHHHHHHHhhcccCCc
Q 017068           15 DSHKAQIQFALER----GI--PAFVAMLGTRRLP-FPAFSFDIVHCSRCLIPFTA--------YNATYLIEVDRLLRPGG   79 (378)
Q Consensus        15 D~se~~vq~A~er----g~--~~~~~v~dae~LP-fpd~SFD~V~cs~~l~hw~~--------~~~~~L~Ev~RVLkPGG   79 (378)
                      |.++.+++.|+++    ++  .+.+..+|++.++ +.+++||+|++...+....+        ....+++++.|+|||||
T Consensus        54 D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG  133 (197)
T 3eey_A           54 DIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGG  133 (197)
T ss_dssp             CSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEE
T ss_pred             ECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCC
Confidence            4456888888776    33  4678888988887 77899999998765522111        11379999999999999


Q ss_pred             EEEEEcC
Q 017068           80 YLVISGP   86 (378)
Q Consensus        80 ~lvis~p   86 (378)
                      ++++...
T Consensus       134 ~l~~~~~  140 (197)
T 3eey_A          134 IITVVIY  140 (197)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEc
Confidence            9998764

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=97.81  E-value=3.7e-05  Score=68.89  Aligned_cols=77  Identities=18%  Similarity=0.278  Sum_probs=57.9

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCC--CCCCceeEEEecCccccccCC--------hHHHH
Q 017068            4 ENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFTAY--------NATYL   68 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LP--fpd~SFD~V~cs~~l~hw~~~--------~~~~L   68 (378)
                      .+|++++++     +.+++.|+++    ++ .+.+..+|+..++  |++++||+|++.... +|...        ...++
T Consensus        66 ~~v~gvD~s-----~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~-~~~~~~~~~~~~~~~~~l  139 (214)
T 1yzh_A           66 INYIGIDIQ-----KSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD-PWPKKRHEKRRLTYKTFL  139 (214)
T ss_dssp             SEEEEEESC-----HHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC-CCCSGGGGGGSTTSHHHH
T ss_pred             CCEEEEEcC-----HHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECCC-CccccchhhhccCCHHHH
Confidence            356666665     5777777764    44 4778889998888  899999999988643 33321        13799


Q ss_pred             HHHhhcccCCcEEEEEcC
Q 017068           69 IEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        69 ~Ev~RVLkPGG~lvis~p   86 (378)
                      .++.|+|||||.+++...
T Consensus       140 ~~~~~~LkpgG~l~~~~~  157 (214)
T 1yzh_A          140 DTFKRILPENGEIHFKTD  157 (214)
T ss_dssp             HHHHHHSCTTCEEEEEES
T ss_pred             HHHHHHcCCCcEEEEEeC
Confidence            999999999999999764

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=97.80  E-value=3.8e-05  Score=74.55  Aligned_cols=74  Identities=20%  Similarity=0.247  Sum_probs=58.1

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRP   77 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkP   77 (378)
                      .++++++ |     .+++.|+++    +.+  +.+..+|...+|+++.  |+|++..+++||++.. ..+|+++.|+|||
T Consensus       216 ~~~~~D~-~-----~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p  287 (359)
T 1x19_A          216 DSTILNL-P-----GAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFCRILYSANEQLSTIMCKKAFDAMRS  287 (359)
T ss_dssp             EEEEEEC-G-----GGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCT
T ss_pred             eEEEEec-H-----HHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEechhccCCHHHHHHHHHHHHHhcCC
Confidence            5677776 5     455555543    443  7788899988888875  9999999999998742 4899999999999


Q ss_pred             CcEEEEEcC
Q 017068           78 GGYLVISGP   86 (378)
Q Consensus        78 GG~lvis~p   86 (378)
                      ||++++...
T Consensus       288 gG~l~i~e~  296 (359)
T 1x19_A          288 GGRLLILDM  296 (359)
T ss_dssp             TCEEEEEEE
T ss_pred             CCEEEEEec
Confidence            999988754

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=97.79  E-value=8.4e-07  Score=76.79  Aligned_cols=96  Identities=17%  Similarity=0.194  Sum_probs=62.4

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc---c-cccccccccCCCCCCccccccccCcc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL---I-GVYHDWCEPFSTYPRTYDLIHVSGIE  296 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---i-g~~~~w~~~f~typrtyDliH~~~~~  296 (378)
                      .+|||+|||+|.++..|..++.  -+|+-.|.. ..++.+-++    |+   + =+..|+.+.++..+..||+|.++..|
T Consensus        33 ~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~  110 (177)
T 2esr_A           33 GRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY  110 (177)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred             CeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCC
Confidence            4799999999999998887642  256667765 666555443    32   1 12334444334445779999997665


Q ss_pred             ccccCCCCCCCCCCccceeeeec--ccccCCCeEEEeCC
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMD--RMLRPEGTVVVRDS  333 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmD--RiLRPgG~~ii~d~  333 (378)
                      ..-          ....++-++-  |+|+|||.+++...
T Consensus       111 ~~~----------~~~~~~~~l~~~~~L~~gG~l~~~~~  139 (177)
T 2esr_A          111 AKE----------TIVATIEALAAKNLLSEQVMVVCETD  139 (177)
T ss_dssp             HHH----------HHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             Ccc----------hHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence            311          1134455554  99999999999754

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.79  E-value=1.2e-06  Score=79.55  Aligned_cols=92  Identities=14%  Similarity=0.267  Sum_probs=62.9

Q ss_pred             eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCCCC--CCccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFSTY--PRTYDLIHV  292 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~ty--prtyDliH~  292 (378)
                      ..|||+|||.|.++..|...  ..   +|+-.|.+ ..+..+-++    |+   +- ...|..+.++..  +.+||+|.+
T Consensus        56 ~~vLdiG~G~G~~~~~la~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  132 (233)
T 2gpy_A           56 ARILEIGTAIGYSAIRMAQALPEA---TIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI  132 (233)
T ss_dssp             SEEEEECCTTSHHHHHHHHHCTTC---EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred             CEEEEecCCCcHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence            48999999999999888654  33   45666665 666666555    44   22 233444322322  478999988


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      +....            ....++-++-|+|||||.+++.+
T Consensus       133 ~~~~~------------~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          133 DAAKG------------QYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             EGGGS------------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred             CCCHH------------HHHHHHHHHHHHcCCCeEEEEEc
Confidence            65443            23568889999999999999975

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=97.79  E-value=4.2e-05  Score=69.94  Aligned_cols=71  Identities=13%  Similarity=0.091  Sum_probs=54.7

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCC---CCceeEEEecCccccccCChHHHHHHHhhccc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFP---AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLR   76 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfp---d~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLk   76 (378)
                      .|+++++.     +.+++.|+++    ++ .+.+..+|++.++++   +++||+|+|..    +.+.. .+++++.|+||
T Consensus        96 ~v~~vD~s-----~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~----~~~~~-~~l~~~~~~Lk  165 (240)
T 1xdz_A           96 HVTIVDSL-----NKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA----VARLS-VLSELCLPLVK  165 (240)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC----CSCHH-HHHHHHGGGEE
T ss_pred             EEEEEeCC-----HHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec----cCCHH-HHHHHHHHhcC
Confidence            45666554     6788887764    55 477888898888875   78999999865    23344 89999999999


Q ss_pred             CCcEEEEEc
Q 017068           77 PGGYLVISG   85 (378)
Q Consensus        77 PGG~lvis~   85 (378)
                      |||+|++..
T Consensus       166 pgG~l~~~~  174 (240)
T 1xdz_A          166 KNGLFVALK  174 (240)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCEEEEEe
Confidence            999999864

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.79  E-value=4.6e-06  Score=76.40  Aligned_cols=126  Identities=13%  Similarity=0.188  Sum_probs=75.3

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----ccc---c-ccccccccCCCC---C--Cccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GLI---G-VYHDWCEPFSTY---P--RTYD  288 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gli---g-~~~~w~~~f~ty---p--rtyD  288 (378)
                      ++|||+|||+|.++..|...   ..   .|+-.|.. ..+.++-++    |+-   - ...+..+.++..   +  .+||
T Consensus        74 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD  150 (232)
T 3cbg_A           74 KQVLEIGVFRGYSALAMALQLPPDG---QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD  150 (232)
T ss_dssp             CEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred             CEEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence            58999999999999888754   22   34444544 555544433    441   1 122222222222   2  6899


Q ss_pred             cccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH------------HHHHHHHH----HHhcCCceEE
Q 017068          289 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP------------EVIDKVSR----IANTVRWTAA  352 (378)
Q Consensus       289 liH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~------------~~~~~~~~----~~~~l~W~~~  352 (378)
                      +|.++....            +...++-++-|+|||||++++.+..            .....+++    +...-+++..
T Consensus       151 ~V~~d~~~~------------~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  218 (232)
T 3cbg_A          151 LIFIDADKR------------NYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRIS  218 (232)
T ss_dssp             EEEECSCGG------------GHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEE
T ss_pred             EEEECCCHH------------HHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEE
Confidence            998764322            2246788889999999999997421            12233333    3445567766


Q ss_pred             EecCCCCCCCCeEEEEEEec
Q 017068          353 VHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       353 ~~~~~~~~~~~e~~l~~~K~  372 (378)
                      ....      .+++.+++|+
T Consensus       219 ~lp~------~dG~~~~~~~  232 (232)
T 3cbg_A          219 VIPL------GDGMTLALKK  232 (232)
T ss_dssp             EECS------BTCEEEEEEC
T ss_pred             EEEc------CCeEEEEEeC
Confidence            6543      3458888874

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.78  E-value=2.4e-06  Score=83.00  Aligned_cols=127  Identities=12%  Similarity=0.076  Sum_probs=75.6

Q ss_pred             eeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhh----cc--ccc-cccccccCCCCCCccccccccC
Q 017068          225 IRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GL--IGV-YHDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig~-~~~w~~~f~typrtyDliH~~~  294 (378)
                      =..|||+|||.|+++|.++.+  ..   .|+-.|.. .++..+-++    |+  +-+ ..|-. .++  +.+||+|.+..
T Consensus       123 g~rVLDIGcG~G~~ta~~lA~~~ga---~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~-~l~--d~~FDvV~~~a  196 (298)
T 3fpf_A          123 GERAVFIGGGPLPLTGILLSHVYGM---RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDET-VID--GLEFDVLMVAA  196 (298)
T ss_dssp             TCEEEEECCCSSCHHHHHHHHTTCC---EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGG-GGG--GCCCSEEEECT
T ss_pred             cCEEEEECCCccHHHHHHHHHccCC---EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchh-hCC--CCCcCEEEECC
Confidence            368999999999998765422  33   45666655 777666554    65  111 11111 133  48999998753


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHHH----HHH-HHHHhcCCceEEEecCCCCCCCCeEEEEE
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVI----DKV-SRIANTVRWTAAVHDKEPGSNGREKILVA  369 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~----~~~-~~~~~~l~W~~~~~~~~~~~~~~e~~l~~  369 (378)
                      ...            +...++-|+-|+|||||.+++++....-    ..+ ....+  .|+....-+..+ .....+.++
T Consensus       197 ~~~------------d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~--gf~~~~~~~p~~-~v~N~vv~a  261 (298)
T 3fpf_A          197 LAE------------PKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDIT--GFRRAGVVLPSG-KVNNTSVLV  261 (298)
T ss_dssp             TCS------------CHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTGGGT--TEEEEEEECCCT-TCCCEEEEE
T ss_pred             Ccc------------CHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChhhhh--hhhheeEECCCC-CcCcEEEEE
Confidence            311            2257999999999999999999743210    001 11223  566654332221 234668888


Q ss_pred             Eec
Q 017068          370 TKS  372 (378)
Q Consensus       370 ~K~  372 (378)
                      +|.
T Consensus       262 ~k~  264 (298)
T 3fpf_A          262 FKC  264 (298)
T ss_dssp             EEC
T ss_pred             Ecc
Confidence            774

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.78  E-value=4.6e-06  Score=75.05  Aligned_cols=126  Identities=20%  Similarity=0.171  Sum_probs=75.6

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----cc---ccc-cccccccCCCCC-----Cccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GL---IGV-YHDWCEPFSTYP-----RTYD  288 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~-~~~w~~~f~typ-----rtyD  288 (378)
                      ++|||+|||+|.++..|...   ..   .|+-.|.. ..+..+-++    |+   +-+ ..|..+.++..+     .+||
T Consensus        71 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D  147 (229)
T 2avd_A           71 KKALDLGTFTGYSALALALALPADG---RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  147 (229)
T ss_dssp             CEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             CEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence            58999999999999888753   33   34555543 555544433    44   111 122222222221     6899


Q ss_pred             cccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC------------HHHHHHH----HHHHhcCCceEE
Q 017068          289 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS------------PEVIDKV----SRIANTVRWTAA  352 (378)
Q Consensus       289 liH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~------------~~~~~~~----~~~~~~l~W~~~  352 (378)
                      +|.++...            .....++-++-|+|||||.+++.+.            ......+    +.+...=+++..
T Consensus       148 ~v~~d~~~------------~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  215 (229)
T 2avd_A          148 VAVVDADK------------ENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYIS  215 (229)
T ss_dssp             EEEECSCS------------TTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEE
T ss_pred             EEEECCCH------------HHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEE
Confidence            99985332            2234678888899999999999642            1122233    334455567776


Q ss_pred             EecCCCCCCCCeEEEEEEec
Q 017068          353 VHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       353 ~~~~~~~~~~~e~~l~~~K~  372 (378)
                      ....      .+++++++|.
T Consensus       216 ~lp~------~dGl~~~~k~  229 (229)
T 2avd_A          216 LLPL------GDGLTLAFKI  229 (229)
T ss_dssp             EECS------TTCEEEEEEC
T ss_pred             EEec------CCceEEEEEC
Confidence            6644      3468888874

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.78  E-value=2.4e-05  Score=72.55  Aligned_cols=66  Identities=21%  Similarity=0.143  Sum_probs=53.8

Q ss_pred             CChHHHHHHHHHc-----C---CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER-----G---IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er-----g---~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.++.+++.|+++     |   ..+.+..+|+..+++++++||+|++     +.+++. .++.++.|+|||||++++..+
T Consensus       131 D~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~-----~~~~~~-~~l~~~~~~L~pgG~l~~~~~  204 (280)
T 1i9g_A          131 EQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL-----DMLAPW-EVLDAVSRLLVAGGVLMVYVA  204 (280)
T ss_dssp             CSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE-----ESSCGG-GGHHHHHHHEEEEEEEEEEES
T ss_pred             eCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEE-----CCcCHH-HHHHHHHHhCCCCCEEEEEeC
Confidence            4456888888775     3   2467888899889999999999997     344555 899999999999999999886

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.77  E-value=1.5e-06  Score=76.33  Aligned_cols=122  Identities=15%  Similarity=0.077  Sum_probs=72.9

Q ss_pred             cccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc--c
Q 017068          198 FEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL--I  270 (378)
Q Consensus       198 F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--i  270 (378)
                      |...+....+.+-+++....  -..+  ..|||+|||+|.++..++.++.-  .|+-.|.+ .++..+-++    |+  +
T Consensus        22 ~rp~~~~~~~~l~~~l~~~~--~~~~--~~vLDlgcG~G~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~v   95 (189)
T 3p9n_A           22 TRPTTDRVRESLFNIVTARR--DLTG--LAVLDLYAGSGALGLEALSRGAA--SVLFVESDQRSAAVIARNIEALGLSGA   95 (189)
T ss_dssp             C---CHHHHHHHHHHHHHHS--CCTT--CEEEEETCTTCHHHHHHHHTTCS--EEEEEECCHHHHHHHHHHHHHHTCSCE
T ss_pred             CccCcHHHHHHHHHHHHhcc--CCCC--CEEEEeCCCcCHHHHHHHHCCCC--eEEEEECCHHHHHHHHHHHHHcCCCce
Confidence            44556666666655554321  0122  47999999999999876655431  35666655 666554443    43  1


Q ss_pred             c-ccccccccCCCC-CCccccccccCccccccCCCCCCCCCCccceeeeecc--cccCCCeEEEeCC
Q 017068          271 G-VYHDWCEPFSTY-PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDR--MLRPEGTVVVRDS  333 (378)
Q Consensus       271 g-~~~~w~~~f~ty-prtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDR--iLRPgG~~ii~d~  333 (378)
                      - +..|..+..+.+ +.+||+|.++..|...        .-.+..++-++-|  +|+|||.+++...
T Consensus        96 ~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~--------~~~~~~~l~~~~~~~~L~pgG~l~~~~~  154 (189)
T 3p9n_A           96 TLRRGAVAAVVAAGTTSPVDLVLADPPYNVD--------SADVDAILAALGTNGWTREGTVAVVERA  154 (189)
T ss_dssp             EEEESCHHHHHHHCCSSCCSEEEECCCTTSC--------HHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred             EEEEccHHHHHhhccCCCccEEEECCCCCcc--------hhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence            1 222333222223 4799999997655431        1234678888988  9999999999754

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.77  E-value=4.1e-06  Score=76.59  Aligned_cols=126  Identities=15%  Similarity=0.225  Sum_probs=77.1

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----cccc---c-ccc----------------cc
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GLIG---V-YHD----------------WC  277 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Glig---~-~~~----------------w~  277 (378)
                      .+|||+|||.|.++..|...   ..   +|+-.|.. ..+..+-++    |+-.   + ..|                |.
T Consensus        62 ~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  138 (239)
T 2hnk_A           62 KRIIEIGTFTGYSSLCFASALPEDG---KILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA  138 (239)
T ss_dssp             SEEEEECCTTCHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred             CEEEEEeCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence            48999999999999888643   33   34555544 555544443    4311   1 111                22


Q ss_pred             ccCCCCC-CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC------------HHHH---HH-H
Q 017068          278 EPFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS------------PEVI---DK-V  340 (378)
Q Consensus       278 ~~f~typ-rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~------------~~~~---~~-~  340 (378)
                      ..|+. + .+||+|.++.....            ...++-++-|+|||||.+++.+.            ....   .+ .
T Consensus       139 ~~f~~-~~~~fD~I~~~~~~~~------------~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~  205 (239)
T 2hnk_A          139 SDFAF-GPSSIDLFFLDADKEN------------YPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFN  205 (239)
T ss_dssp             TTTCC-STTCEEEEEECSCGGG------------HHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHH
T ss_pred             ccccC-CCCCcCEEEEeCCHHH------------HHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHH
Confidence            22321 2 68999988643332            24678889999999999999751            1122   22 3


Q ss_pred             HHHHhcCCceEEEecCCCCCCCCeEEEEEEecC
Q 017068          341 SRIANTVRWTAAVHDKEPGSNGREKILVATKSL  373 (378)
Q Consensus       341 ~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~~  373 (378)
                      +.+.+.=.+.+......      +++.+++|++
T Consensus       206 ~~~~~~~~~~~~~~p~~------~g~~~~~~~~  232 (239)
T 2hnk_A          206 ELVYNDSLVDVSLVPIA------DGVSLVRKRL  232 (239)
T ss_dssp             HHHHHCTTEEEEEECST------TCEEEEEECC
T ss_pred             HHHhhCCCeEEEEEEcC------CceEeeeehh
Confidence            33455666777766543      4588898876

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=97.77  E-value=3.3e-05  Score=69.02  Aligned_cols=79  Identities=15%  Similarity=0.099  Sum_probs=54.7

Q ss_pred             CCeEEEecCCCCChHHHHHHHHH----cCC-CeEEEEcccCCCCCCCCceeEEEecCcc-----ccccCChHHHHHHHhh
Q 017068            4 ENILTLSFAPRDSHKAQIQFALE----RGI-PAFVAMLGTRRLPFPAFSFDIVHCSRCL-----IPFTAYNATYLIEVDR   73 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~e----rg~-~~~~~v~dae~LPfpd~SFD~V~cs~~l-----~hw~~~~~~~L~Ev~R   73 (378)
                      ..|+++++++..+... .+.|++    ++. .+.+.++|++.+||++++ |.|......     +|..++. .+++|+.|
T Consensus        52 ~~v~gvD~s~~~l~~~-~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~~~~~~~~~~~~~~~~-~~l~~~~~  128 (218)
T 3mq2_A           52 RLVVALDADKSRMEKI-SAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVLMPWGSLLRGVLGSSP-EMLRGMAA  128 (218)
T ss_dssp             EEEEEEESCGGGGHHH-HHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEESCCHHHHHHHHTSSS-HHHHHHHH
T ss_pred             CEEEEEECCHHHHHHH-HHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEEccchhhhhhhhccHH-HHHHHHHH
Confidence            3577777776433321 222332    344 477889999999999888 888743321     1555556 99999999


Q ss_pred             cccCCcEEEEEc
Q 017068           74 LLRPGGYLVISG   85 (378)
Q Consensus        74 VLkPGG~lvis~   85 (378)
                      +|||||.|+++.
T Consensus       129 ~LkpgG~l~~~~  140 (218)
T 3mq2_A          129 VCRPGASFLVAL  140 (218)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             HcCCCcEEEEEe
Confidence            999999999964

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.77  E-value=2.6e-05  Score=72.82  Aligned_cols=124  Identities=11%  Similarity=0.112  Sum_probs=74.3

Q ss_pred             CeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHh-------hcc---ccc-cccccccCC-----CC-
Q 017068          224 AIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYD-------RGL---IGV-YHDWCEPFS-----TY-  283 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~e-------RGl---ig~-~~~w~~~f~-----ty-  283 (378)
                      .-.+|||+|||+|.++..|..+  ..   +|+-.|.. ..+..+-+       .|+   +-+ ..|..+..+     .+ 
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~~---~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~  112 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEKA---EVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLP  112 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTTE---EEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCC
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccC
Confidence            3458999999999998888654  23   55666654 55544433       233   222 223333211     12 


Q ss_pred             CCccccccccCcccccc---CCCC------CCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceE
Q 017068          284 PRTYDLIHVSGIESLIK---NPGS------NKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTA  351 (378)
Q Consensus       284 prtyDliH~~~~~~~~~---~~~~------~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~  351 (378)
                      +.+||+|.|+--|....   +++.      ....+.+..++-++-|+|+|||.+++--..+...++.+.++.- |..
T Consensus       113 ~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~  188 (260)
T 2ozv_A          113 DEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGG  188 (260)
T ss_dssp             TTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEE
T ss_pred             CCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCc
Confidence            47899999984443210   0000      0123557788999999999999998876666666776666663 653

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.76  E-value=8.5e-06  Score=74.14  Aligned_cols=131  Identities=14%  Similarity=0.123  Sum_probs=72.8

Q ss_pred             eEEEecCCcceeeeeeccCC-C-eeEEEeccCCCC-cchHHHHhhc-----cccccccccccC--CCCCCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSD-P-VWVMNVVPARKS-STLSVIYDRG-----LIGVYHDWCEPF--STYPRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-~-vwvmnv~p~~~~-~~l~~i~eRG-----lig~~~~w~~~f--~typrtyDliH~~~~  295 (378)
                      .+|||+|||+|.++..|.+. + .   .|+..|.+ ..+..+-++-     +.-+..|-..+.  ..++.+||+|.+.  
T Consensus        76 ~~VLDlGcG~G~~~~~la~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~--  150 (230)
T 1fbn_A           76 SKILYLGASAGTTPSHVADIADKG---IVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED--  150 (230)
T ss_dssp             CEEEEESCCSSHHHHHHHHHTTTS---EEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEEC--
T ss_pred             CEEEEEcccCCHHHHHHHHHcCCc---EEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEe--
Confidence            47999999999999888754 2 3   34555544 5554443321     111223333211  1234689998732  


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEe----CC-----HH--HHHHHHHHHhcCCceEEE-ecCCCCCCCC
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR----DS-----PE--VIDKVSRIANTVRWTAAV-HDKEPGSNGR  363 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~----d~-----~~--~~~~~~~~~~~l~W~~~~-~~~~~~~~~~  363 (378)
                         ..      ..-....+|-++-|+|+|||.+++.    ..     ..  .-+.++ ++++..++... .+.+ ....+
T Consensus       151 ---~~------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~-~~~~~  219 (230)
T 1fbn_A          151 ---VA------QPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIE-PFEKD  219 (230)
T ss_dssp             ---CC------STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECT-TTSTT
T ss_pred             ---cC------ChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccC-CCccc
Confidence               11      1111245789999999999999993    11     11  124555 44544555543 2322 11234


Q ss_pred             eEEEEEEec
Q 017068          364 EKILVATKS  372 (378)
Q Consensus       364 e~~l~~~K~  372 (378)
                      .-+++++|+
T Consensus       220 ~~~v~~~k~  228 (230)
T 1fbn_A          220 HVMFVGIWE  228 (230)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEEeC
Confidence            567888874

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=97.76  E-value=2.8e-05  Score=72.81  Aligned_cols=65  Identities=11%  Similarity=0.166  Sum_probs=53.0

Q ss_pred             CChHHHHHHHHHc-----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER-----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er-----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.++.+++.|+++     |. .+.+..+|+.. ++++++||+|++     |.+++. .+++++.|+|||||+++++.+
T Consensus       142 D~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~-----~~~~~~-~~l~~~~~~LkpgG~l~i~~~  212 (275)
T 1yb2_A          142 ERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIA-----DIPDPW-NHVQKIASMMKPGSVATFYLP  212 (275)
T ss_dssp             CSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEE-----CCSCGG-GSHHHHHHTEEEEEEEEEEES
T ss_pred             ECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEEE-----cCcCHH-HHHHHHHHHcCCCCEEEEEeC
Confidence            4456888888775     43 36778888877 888899999997     556666 899999999999999999886

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=97.76  E-value=1.4e-05  Score=81.22  Aligned_cols=74  Identities=14%  Similarity=0.034  Sum_probs=55.9

Q ss_pred             eEEEecCCCCChHHHHHHHHH-----------cCC---CeEEEEcccCCCCCCC--CceeEEEecCccccccCChHHHHH
Q 017068            6 ILTLSFAPRDSHKAQIQFALE-----------RGI---PAFVAMLGTRRLPFPA--FSFDIVHCSRCLIPFTAYNATYLI   69 (378)
Q Consensus         6 v~~ms~ap~D~se~~vq~A~e-----------rg~---~~~~~v~dae~LPfpd--~SFD~V~cs~~l~hw~~~~~~~L~   69 (378)
                      |+++++.|     .+++.|++           .|+   .+.+..+|+..+||++  .+||+|+++..+ ++++.. ..|.
T Consensus       200 VvGIDiS~-----~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~-~aL~  272 (438)
T 3uwp_A          200 HYGVEKAD-----IPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFA-FGPEVD-HQLK  272 (438)
T ss_dssp             EEEEECCH-----HHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTT-CCHHHH-HHHH
T ss_pred             EEEEeCCH-----HHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccCCccEEEEcccc-cCchHH-HHHH
Confidence            77777764     55555543           243   4788999999999976  579999987543 555555 8899


Q ss_pred             HHhhcccCCcEEEEEcC
Q 017068           70 EVDRLLRPGGYLVISGP   86 (378)
Q Consensus        70 Ev~RVLkPGG~lvis~p   86 (378)
                      |+.|+|||||+|+++.+
T Consensus       273 Ei~RvLKPGGrIVssE~  289 (438)
T 3uwp_A          273 ERFANMKEGGRIVSSKP  289 (438)
T ss_dssp             HHHTTSCTTCEEEESSC
T ss_pred             HHHHcCCCCcEEEEeec
Confidence            99999999999998755

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.76  E-value=1.8e-05  Score=66.56  Aligned_cols=72  Identities=14%  Similarity=0.021  Sum_probs=53.3

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCC--------CCCCceeEEEecCccccccCCh----------H
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP--------FPAFSFDIVHCSRCLIPFTAYN----------A   65 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LP--------fpd~SFD~V~cs~~l~hw~~~~----------~   65 (378)
                      ..|+++++.+ ....          ..+.+..+|...++        +++++||+|++...+++.....          .
T Consensus        48 ~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~  116 (180)
T 1ej0_A           48 GRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVE  116 (180)
T ss_dssp             CEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHH
Confidence            3566676666 3211          24567788888877        8899999999987765444330          3


Q ss_pred             HHHHHHhhcccCCcEEEEEcC
Q 017068           66 TYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        66 ~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .+++++.|+|||||.++++.+
T Consensus       117 ~~l~~~~~~L~~gG~l~~~~~  137 (180)
T 1ej0_A          117 LALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHcCCCcEEEEEEe
Confidence            889999999999999999765

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=97.75  E-value=2e-05  Score=71.24  Aligned_cols=76  Identities=14%  Similarity=0.210  Sum_probs=56.8

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCC--CCCCceeEEEecCccccccCC--------hHHHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFTAY--------NATYLI   69 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LP--fpd~SFD~V~cs~~l~hw~~~--------~~~~L~   69 (378)
                      +|+++++     |+.+++.|+++    ++ ++.+..+|+..++  |++++||.|++.+.. +|...        ...+++
T Consensus        64 ~v~giD~-----s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~-p~~~~~~~~~rl~~~~~l~  137 (213)
T 2fca_A           64 NYIGIEL-----FKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD-PWPKKRHEKRRLTYSHFLK  137 (213)
T ss_dssp             EEEEECS-----CHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC-CCCSGGGGGGSTTSHHHHH
T ss_pred             CEEEEEe-----chHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECCC-CCcCccccccccCcHHHHH
Confidence            4566555     46888888774    54 4678888988887  899999999876542 34321        137899


Q ss_pred             HHhhcccCCcEEEEEcC
Q 017068           70 EVDRLLRPGGYLVISGP   86 (378)
Q Consensus        70 Ev~RVLkPGG~lvis~p   86 (378)
                      ++.|+|||||.|++.+.
T Consensus       138 ~~~~~LkpgG~l~~~td  154 (213)
T 2fca_A          138 KYEEVMGKGGSIHFKTD  154 (213)
T ss_dssp             HHHHHHTTSCEEEEEES
T ss_pred             HHHHHcCCCCEEEEEeC
Confidence            99999999999999764

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.75  E-value=4.4e-06  Score=72.45  Aligned_cols=124  Identities=10%  Similarity=0.110  Sum_probs=74.0

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc--cc-ccccccccCCC--C-CCccccccccCcccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL--IG-VYHDWCEPFST--Y-PRTYDLIHVSGIESL  298 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl--ig-~~~~w~~~f~t--y-prtyDliH~~~~~~~  298 (378)
                      ..|||+|||.                |. .|.+ .++..+-+|--  +- ...|-. .++.  + +.+||+|.|..++..
T Consensus        14 ~~vL~~~~g~----------------v~-vD~s~~ml~~a~~~~~~~~~~~~~d~~-~~~~~~~~~~~fD~V~~~~~l~~   75 (176)
T 2ld4_A           14 QFVAVVWDKS----------------SP-VEALKGLVDKLQALTGNEGRVSVENIK-QLLQSAHKESSFDIILSGLVPGS   75 (176)
T ss_dssp             SEEEEEECTT----------------SC-HHHHHHHHHHHHHHTTTTSEEEEEEGG-GGGGGCCCSSCEEEEEECCSTTC
T ss_pred             CEEEEecCCc----------------ee-eeCCHHHHHHHHHhcccCcEEEEechh-cCccccCCCCCEeEEEECChhhh
Confidence            6789999985                12 4544 67776666531  11 111221 2232  2 489999999888775


Q ss_pred             ccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHH----------HHHHHHHHHhcCCceEEEecCCC----------
Q 017068          299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPE----------VIDKVSRIANTVRWTAAVHDKEP----------  358 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~----------~~~~~~~~~~~l~W~~~~~~~~~----------  358 (378)
                      ..        .+...+|-|+-|+|||||++++.+...          ..+++.+.++.--+ +...+...          
T Consensus        76 ~~--------~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~~~~~~~~~~~~~~~~  146 (176)
T 2ld4_A           76 TT--------LHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEVKELQREPLTPEEVQS  146 (176)
T ss_dssp             CC--------CCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEEEEEEEECCCHHHHHH
T ss_pred             cc--------cCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cEeecCcccCCCHHHHHH
Confidence            41        123789999999999999999964311          14566665554444 33221110          


Q ss_pred             -----CCCC---CeEEEEEEecCCCC
Q 017068          359 -----GSNG---REKILVATKSLWKL  376 (378)
Q Consensus       359 -----~~~~---~e~~l~~~K~~w~~  376 (378)
                           |...   .--+++|+|+-|..
T Consensus       147 ~~~~~g~~~~~~~~~~~~a~Kp~~~~  172 (176)
T 2ld4_A          147 VREHLGHESDNLLFVQITGKKPNFEV  172 (176)
T ss_dssp             HHHHTCCCCSSEEEEEEEEECCCSSC
T ss_pred             HHHHhcccCCceEEEEEeccCCcccc
Confidence                 0011   14578999998865

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.75  E-value=1.2e-05  Score=78.74  Aligned_cols=65  Identities=14%  Similarity=0.036  Sum_probs=53.3

Q ss_pred             HHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           18 KAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        18 e~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +.+++.|++. ..+.+..+|... |+|+  ||+|++..+++||+++. ..+|+++.|+|||||++++...
T Consensus       242 ~~~~~~a~~~-~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~  307 (372)
T 1fp1_D          242 PQVIENAPPL-SGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF  307 (372)
T ss_dssp             HHHHTTCCCC-TTEEEEECCTTT-CCCC--EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHhhhhc-CCCEEEeCCccc-CCCC--CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            4777777653 347788888877 8876  99999999999998754 4899999999999999998743

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=97.74  E-value=5.5e-06  Score=81.40  Aligned_cols=116  Identities=14%  Similarity=0.183  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHH----hhhhcC-CCCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCCcchHHHHhh-ccccccc
Q 017068          203 RRWRRRVAYYKNT----LNVKLG-TPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYDR-GLIGVYH  274 (378)
Q Consensus       203 ~~w~~~v~~Y~~~----~~~~~~-~~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~~~l~~i~eR-Glig~~~  274 (378)
                      +.|.+.+..|...    +...+. ....+.|||+|||+|.++..|.++  .+   .++-.|.+..+..+-++ ++-=+-+
T Consensus       177 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~v~~~~~  253 (368)
T 3reo_A          177 KVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSI---NAINFDLPHVIQDAPAFSGVEHLGG  253 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHTTCCCCTTEEEEEC
T ss_pred             HHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCC---EEEEEehHHHHHhhhhcCCCEEEec
Confidence            3455555555332    222333 456789999999999999998742  22   12222222222222221 2222344


Q ss_pred             cccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          275 DWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       275 ~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      |..+++   |.. |+|.+..++..|.+     .  ....+|-++-|+|+|||.++|.|
T Consensus       254 d~~~~~---p~~-D~v~~~~vlh~~~~-----~--~~~~~l~~~~~~L~pgG~l~i~e  300 (368)
T 3reo_A          254 DMFDGV---PKG-DAIFIKWICHDWSD-----E--HCLKLLKNCYAALPDHGKVIVAE  300 (368)
T ss_dssp             CTTTCC---CCC-SEEEEESCGGGBCH-----H--HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCCCC---CCC-CEEEEechhhcCCH-----H--HHHHHHHHHHHHcCCCCEEEEEE
Confidence            554444   444 99999999988751     1  12478999999999999999965

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.74  E-value=5e-06  Score=76.49  Aligned_cols=110  Identities=13%  Similarity=0.054  Sum_probs=65.5

Q ss_pred             eeEEEecCCcceeeeeeccCCC-eeEEEeccCCCC-cchHHHHhh-------cc--------------------------
Q 017068          225 IRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDR-------GL--------------------------  269 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~-~~l~~i~eR-------Gl--------------------------  269 (378)
                      -..|||+|||+|.|+..|...- .-..+|+-.|.+ ..++.+-++       |+                          
T Consensus        52 ~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (250)
T 1o9g_A           52 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA  131 (250)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhh
Confidence            3579999999999999887650 002366777765 666554322       32                          


Q ss_pred             --cc--------------ccccccccCCC----CCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEE
Q 017068          270 --IG--------------VYHDWCEPFST----YPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVV  329 (378)
Q Consensus       270 --ig--------------~~~~w~~~f~t----yprtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~i  329 (378)
                        +-              ..+|..+.++.    -..+||+|.|+-.+........+...-....++-++-|+|+|||+++
T Consensus       132 ~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  211 (250)
T 1o9g_A          132 RRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIA  211 (250)
T ss_dssp             HHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             hhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEE
Confidence              11              12344443321    12489999998665543200000001123478889999999999999


Q ss_pred             EeCCH
Q 017068          330 VRDSP  334 (378)
Q Consensus       330 i~d~~  334 (378)
                      +.+..
T Consensus       212 ~~~~~  216 (250)
T 1o9g_A          212 VTDRS  216 (250)
T ss_dssp             EEESS
T ss_pred             EeCcc
Confidence            96543

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.73  E-value=5.6e-06  Score=79.01  Aligned_cols=95  Identities=16%  Similarity=0.109  Sum_probs=52.0

Q ss_pred             eEEEecCCcceeeeeeccCC-CeeEEEeccCCCCcchHHHHhh---------ccccc--cccccccCCCCCCcccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLSVIYDR---------GLIGV--YHDWCEPFSTYPRTYDLIHVS  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~~~l~~i~eR---------Glig~--~~~w~~~f~typrtyDliH~~  293 (378)
                      ..|||+|||+|+|+..|..+ .|.-+-+.|.     +..+-++         ++.-+  -.|-. .++  +.+||+|-|+
T Consensus        84 ~~VLDlGcGtG~~s~~la~~~~V~gVD~s~m-----~~~a~~~~~~~~~~~~~v~~~~~~~D~~-~l~--~~~fD~Vvsd  155 (276)
T 2wa2_A           84 GTVVDLGCGRGSWSYYAASQPNVREVKAYTL-----GTSGHEKPRLVETFGWNLITFKSKVDVT-KME--PFQADTVLCD  155 (276)
T ss_dssp             EEEEEESCTTCHHHHHHHTSTTEEEEEEECC-----CCTTSCCCCCCCCTTGGGEEEECSCCGG-GCC--CCCCSEEEEC
T ss_pred             CEEEEeccCCCHHHHHHHHcCCEEEEECchh-----hhhhhhchhhhhhcCCCeEEEeccCcHh-hCC--CCCcCEEEEC
Confidence            58999999999999888776 3333333331     1101111         11111  12322 243  5899999997


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCC--eEEEe
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEG--TVVVR  331 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG--~~ii~  331 (378)
                      ..+..-. +.. ...-. ..+|-++.|+|+|||  .|++.
T Consensus       156 ~~~~~~~-~~~-d~~~~-l~~L~~~~r~LkpGG~~~~v~~  192 (276)
T 2wa2_A          156 IGESNPT-AAV-EASRT-LTVLNVISRWLEYNQGCGFCVK  192 (276)
T ss_dssp             CCCCCSC-HHH-HHHHH-HHHHHHHHHHHHHSTTCEEEEE
T ss_pred             CCcCCCc-hhh-hHHHH-HHHHHHHHHHhccCCCcEEEEE
Confidence            5421000 000 00000 026788999999999  88885

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=97.73  E-value=4.9e-05  Score=74.07  Aligned_cols=72  Identities=13%  Similarity=0.173  Sum_probs=52.9

Q ss_pred             CeEEEecCCCCChHHHHHHHHH----cCC--CeEEEEcccCCCCCCCCceeEEEecCc---cccccCChHHHHHHHhhcc
Q 017068            5 NILTLSFAPRDSHKAQIQFALE----RGI--PAFVAMLGTRRLPFPAFSFDIVHCSRC---LIPFTAYNATYLIEVDRLL   75 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~e----rg~--~~~~~v~dae~LPfpd~SFD~V~cs~~---l~hw~~~~~~~L~Ev~RVL   75 (378)
                      .|+++++++      +++.|++    .+.  .+.+..+|++.+++++++||+|+|...   +.|-... ..++.++.|+|
T Consensus        89 ~v~gvD~s~------~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~-~~~l~~~~~~L  161 (340)
T 2fyt_A           89 KVLGVDQSE------ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESML-DSVLYAKNKYL  161 (340)
T ss_dssp             EEEEEESST------HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHH-HHHHHHHHHHE
T ss_pred             EEEEEChHH------HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhhccCHHHH-HHHHHHHHhhc
Confidence            577777763      3444444    344  477888999999999999999998763   3332222 37999999999


Q ss_pred             cCCcEEEE
Q 017068           76 RPGGYLVI   83 (378)
Q Consensus        76 kPGG~lvi   83 (378)
                      ||||.++.
T Consensus       162 kpgG~lip  169 (340)
T 2fyt_A          162 AKGGSVYP  169 (340)
T ss_dssp             EEEEEEES
T ss_pred             CCCcEEEc
Confidence            99999983

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=97.72  E-value=1.9e-06  Score=77.26  Aligned_cols=139  Identities=11%  Similarity=0.094  Sum_probs=69.4

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCCcchHHHHhhccccccccccccCCC-------CC----CccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFST-------YP----RTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~~~l~~i~eRGlig~~~~w~~~f~t-------yp----rtyDliH~~~  294 (378)
                      .+|||+|||+|+|+..|..+.--|   +..|-....+   ..++--+..|..+. ++       ++    .+||+|-|+.
T Consensus        27 ~~VLDlG~G~G~~s~~la~~~~~V---~gvD~~~~~~---~~~v~~~~~D~~~~-~~~~~~~~~~~~~~~~~~D~Vlsd~   99 (191)
T 3dou_A           27 DAVIEIGSSPGGWTQVLNSLARKI---ISIDLQEMEE---IAGVRFIRCDIFKE-TIFDDIDRALREEGIEKVDDVVSDA   99 (191)
T ss_dssp             CEEEEESCTTCHHHHHHTTTCSEE---EEEESSCCCC---CTTCEEEECCTTSS-SHHHHHHHHHHHHTCSSEEEEEECC
T ss_pred             CEEEEEeecCCHHHHHHHHcCCcE---EEEecccccc---CCCeEEEEccccCH-HHHHHHHHHhhcccCCcceEEecCC
Confidence            689999999999999998875423   3333221100   01222223333321 10       11    3799999864


Q ss_pred             ccccc--cCCCCCCCCCCccceeeeecccccCCCeEEEeCC-HHHHHHHHHHHhcCCceEE-Ee-cCCCCCCCCeEEEEE
Q 017068          295 IESLI--KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWTAA-VH-DKEPGSNGREKILVA  369 (378)
Q Consensus       295 ~~~~~--~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-~~~~~~~~~~~~~l~W~~~-~~-~~~~~~~~~e~~l~~  369 (378)
                      .....  ...+........+.+|-++-|+|||||.+++.-- .+....+...++.. +... .. ....-+.+.|.++||
T Consensus       100 ~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~-F~~v~~~kP~asR~~s~E~y~v~  178 (191)
T 3dou_A          100 MAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN-FSSYKISKPPASRGSSSEIYIMF  178 (191)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG-EEEEEEECC------CCEEEEEE
T ss_pred             CcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh-cCEEEEECCCCccCCCceEEEEE
Confidence            22100  0000000000113567788999999999987531 11223444444442 3332 22 222233468999999


Q ss_pred             Eec
Q 017068          370 TKS  372 (378)
Q Consensus       370 ~K~  372 (378)
                      ++.
T Consensus       179 ~~~  181 (191)
T 3dou_A          179 FGF  181 (191)
T ss_dssp             EEE
T ss_pred             eee
Confidence            864

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.71  E-value=7.1e-06  Score=73.78  Aligned_cols=88  Identities=16%  Similarity=0.160  Sum_probs=56.5

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----c--------cccccccccccCCCCCCcccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----G--------LIGVYHDWCEPFSTYPRTYDL  289 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----G--------lig~~~~w~~~f~typrtyDl  289 (378)
                      ..|||+|||.|.+++.|...   ..   +|+-.|.+ ..+..+-++    |        +--...|..+.++ .+.+||+
T Consensus        79 ~~vLDiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~  154 (226)
T 1i1n_A           79 AKALDVGSGSGILTACFARMVGCTG---KVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA-EEAPYDA  154 (226)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-GGCCEEE
T ss_pred             CEEEEEcCCcCHHHHHHHHHhCCCc---EEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc-cCCCcCE
Confidence            48999999999999988643   13   34555544 555544332    2        1112334433221 2368999


Q ss_pred             ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      |++...+.               .++-++-|+|+|||.+++.-
T Consensus       155 i~~~~~~~---------------~~~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          155 IHVGAAAP---------------VVPQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             EEECSBBS---------------SCCHHHHHTEEEEEEEEEEE
T ss_pred             EEECCchH---------------HHHHHHHHhcCCCcEEEEEE
Confidence            99865442               35668889999999999974

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.70  E-value=9.1e-06  Score=74.14  Aligned_cols=106  Identities=12%  Similarity=0.100  Sum_probs=69.8

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh-----cc--cc-ccccccccCCCCC-Cccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR-----GL--IG-VYHDWCEPFSTYP-RTYDLIHV  292 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR-----Gl--ig-~~~~w~~~f~typ-rtyDliH~  292 (378)
                      .+|||+|||.|.++.+|...   ..   +|...|.+ ..+..+-++     |.  +- ...|..+.  +++ .+||+|.+
T Consensus        98 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~--~~~~~~~D~v~~  172 (258)
T 2pwy_A           98 MRVLEAGTGSGGLTLFLARAVGEKG---LVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA--ELEEAAYDGVAL  172 (258)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC--CCCTTCEEEEEE
T ss_pred             CEEEEECCCcCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc--CCCCCCcCEEEE
Confidence            48999999999999988754   33   44555654 666666554     52  11 22344443  133 68999987


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH-HHHHHHHHHHhcCCce
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWT  350 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-~~~~~~~~~~~~l~W~  350 (378)
                      +.     .         ....+|-++-|+|+|||.+++.... +.+.++.+.++...|.
T Consensus       173 ~~-----~---------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~  217 (258)
T 2pwy_A          173 DL-----M---------EPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFR  217 (258)
T ss_dssp             ES-----S---------CGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred             CC-----c---------CHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence            31     1         1246899999999999999998754 3555655555555554

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=97.70  E-value=1.2e-05  Score=75.44  Aligned_cols=108  Identities=11%  Similarity=0.122  Sum_probs=72.4

Q ss_pred             eeEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh-----cc--cc-ccccccccCCCCCCccccccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR-----GL--IG-VYHDWCEPFSTYPRTYDLIHV  292 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR-----Gl--ig-~~~~w~~~f~typrtyDliH~  292 (378)
                      -.+|||+|||.|+++..|...   ..   .|+-.|.+ ..+..+-++     |+  +- ...|..+.++  +.+||+|-+
T Consensus       111 ~~~VLD~G~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~--~~~fD~Vi~  185 (275)
T 1yb2_A          111 GMDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--DQMYDAVIA  185 (275)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--SCCEEEEEE
T ss_pred             cCEEEEecCCCCHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc--CCCccEEEE
Confidence            358999999999999988754   34   45666655 666655554     53  11 2344555333  368999987


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHH-HHHHHHHHHhcCCceE
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPE-VIDKVSRIANTVRWTA  351 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~-~~~~~~~~~~~l~W~~  351 (378)
                      .     .     +    +...+|-++-|+|+|||.+++..... ..+++.+.++...|..
T Consensus       186 ~-----~-----~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~  231 (275)
T 1yb2_A          186 D-----I-----P----DPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHH  231 (275)
T ss_dssp             C-----C-----S----CGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEE
T ss_pred             c-----C-----c----CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeE
Confidence            2     1     1    12578999999999999999987543 5566666655555554

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=97.70  E-value=4.6e-06  Score=74.65  Aligned_cols=119  Identities=15%  Similarity=0.111  Sum_probs=69.3

Q ss_pred             eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHH--------hhccc--cc-cccccccCCCCCCcccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIY--------DRGLI--GV-YHDWCEPFSTYPRTYDLIH  291 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~--------eRGli--g~-~~~w~~~f~typrtyDliH  291 (378)
                      ..|||+|||+|.++..|...  ..   +|+-.|.+ .+|..+.        .+|+-  -. ..|.. .+|..+.+ |.+.
T Consensus        29 ~~vLDiGcG~G~~~~~la~~~p~~---~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~-~l~~~~~~-d~v~  103 (218)
T 3mq2_A           29 DVVLDVGTGDGKHPYKVARQNPSR---LVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAE-RLPPLSGV-GELH  103 (218)
T ss_dssp             EEEEEESCTTCHHHHHHHHHCTTE---EEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCST-TCCSCCCE-EEEE
T ss_pred             CEEEEecCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchh-hCCCCCCC-CEEE
Confidence            57999999999999999865  44   55666655 6666432        34441  11 22222 24432345 7666


Q ss_pred             ccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC------------------CHHH-HHHHHHHHhcCCceEE
Q 017068          292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD------------------SPEV-IDKVSRIANTVRWTAA  352 (378)
Q Consensus       292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d------------------~~~~-~~~~~~~~~~l~W~~~  352 (378)
                      ..-.+....    ....-+...+|-|+-|+|||||.+++.-                  .... .+.+.+++..--|++.
T Consensus       104 ~~~~~~~~~----~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~  179 (218)
T 3mq2_A          104 VLMPWGSLL----RGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLA  179 (218)
T ss_dssp             EESCCHHHH----HHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEE
T ss_pred             EEccchhhh----hhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCce
Confidence            322111100    0000011578999999999999999952                  1122 3337777777778765


Q ss_pred             E
Q 017068          353 V  353 (378)
Q Consensus       353 ~  353 (378)
                      .
T Consensus       180 ~  180 (218)
T 3mq2_A          180 D  180 (218)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.70  E-value=2e-05  Score=69.07  Aligned_cols=77  Identities=13%  Similarity=0.050  Sum_probs=57.7

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCC--CCCCceeEEEecCccccccCChHHHHHHHhh--cc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFTAYNATYLIEVDR--LL   75 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LP--fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~R--VL   75 (378)
                      .|+++++.     +.+++.|+++    ++ .+.+..+|+..++  +++++||+|++...+++..+....++.++.+  +|
T Consensus        69 ~v~~vD~~-----~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L  143 (189)
T 3p9n_A           69 SVLFVESD-----QRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWT  143 (189)
T ss_dssp             EEEEEECC-----HHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSC
T ss_pred             eEEEEECC-----HHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCcc
Confidence            36666665     5788877775    44 4778888887764  5689999999987654432333489999999  99


Q ss_pred             cCCcEEEEEcC
Q 017068           76 RPGGYLVISGP   86 (378)
Q Consensus        76 kPGG~lvis~p   86 (378)
                      ||||++++..+
T Consensus       144 ~pgG~l~~~~~  154 (189)
T 3p9n_A          144 REGTVAVVERA  154 (189)
T ss_dssp             CTTCEEEEEEE
T ss_pred             CCCeEEEEEec
Confidence            99999999765

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=97.69  E-value=1.3e-05  Score=76.39  Aligned_cols=152  Identities=12%  Similarity=0.167  Sum_probs=92.1

Q ss_pred             chHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh----cc---cc
Q 017068          201 DSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GL---IG  271 (378)
Q Consensus       201 d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig  271 (378)
                      +++.+.+.+-.+...     ..  -.+|||+|||+|.++.+|... ..   +|+-.|.+ ..+.++-++    |+   +-
T Consensus       107 ~te~lv~~~l~~~~~-----~~--~~~vLDlG~GsG~~~~~la~~~~~---~v~~vDis~~al~~A~~n~~~~~l~~~v~  176 (284)
T 1nv8_A          107 ETEELVELALELIRK-----YG--IKTVADIGTGSGAIGVSVAKFSDA---IVFATDVSSKAVEIARKNAERHGVSDRFF  176 (284)
T ss_dssp             THHHHHHHHHHHHHH-----HT--CCEEEEESCTTSHHHHHHHHHSSC---EEEEEESCHHHHHHHHHHHHHTTCTTSEE
T ss_pred             hHHHHHHHHHHHhcc-----cC--CCEEEEEeCchhHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCceE
Confidence            456665555444331     11  237999999999999998765 33   56677765 666665443    44   22


Q ss_pred             -ccccccccCCCCCCcc---ccccccCccccccC---CCCC-C------CCCCccceeeeec-ccccCCCeEEEeCCHHH
Q 017068          272 -VYHDWCEPFSTYPRTY---DLIHVSGIESLIKN---PGSN-K------NSCSLVDLMVEMD-RMLRPEGTVVVRDSPEV  336 (378)
Q Consensus       272 -~~~~w~~~f~typrty---DliH~~~~~~~~~~---~~~~-~------~~c~~~~~l~EmD-RiLRPgG~~ii~d~~~~  336 (378)
                       +..|+.+.++   .+|   |+|.++--+.....   ++.. .      ..++-..++-++= |.|+|||++++.-..+.
T Consensus       177 ~~~~D~~~~~~---~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q  253 (284)
T 1nv8_A          177 VRKGEFLEPFK---EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQ  253 (284)
T ss_dssp             EEESSTTGGGG---GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTC
T ss_pred             EEECcchhhcc---cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchH
Confidence             3456666543   578   99998733332110   0000 0      0011125677788 99999999999765556


Q ss_pred             HHHHHHHHhcCCceEEEecCCCCCCCCeEEEEEEec
Q 017068          337 IDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       337 ~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~  372 (378)
                      -+.+.++.+..   ....|-    .+.+++++++++
T Consensus       254 ~~~v~~~~~~~---~~~~D~----~g~~R~~~~~~k  282 (284)
T 1nv8_A          254 VEELKKIVSDT---VFLKDS----AGKYRFLLLNRR  282 (284)
T ss_dssp             HHHHTTTSTTC---EEEECT----TSSEEEEEEECC
T ss_pred             HHHHHHHHHhC---Ceeccc----CCCceEEEEEEc
Confidence            66777776654   223343    367899988875

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.69  E-value=7.6e-05  Score=67.76  Aligned_cols=69  Identities=13%  Similarity=0.187  Sum_probs=52.2

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC---CCeEEEEcccCC----CCCCCCceeEEEecCccccccCCh--HHHHHHHhhcc
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRR----LPFPAFSFDIVHCSRCLIPFTAYN--ATYLIEVDRLL   75 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg---~~~~~~v~dae~----LPfpd~SFD~V~cs~~l~hw~~~~--~~~L~Ev~RVL   75 (378)
                      .|++++++     +.+++.|+++.   ..+.+..+|+..    ++++ ++||+|++     +..++.  ..+++++.|+|
T Consensus       100 ~v~gvD~s-----~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~-----~~~~~~~~~~~l~~~~~~L  168 (230)
T 1fbn_A          100 IVYAIEYA-----PRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYE-----DVAQPNQAEILIKNAKWFL  168 (230)
T ss_dssp             EEEEEESC-----HHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEE-----CCCSTTHHHHHHHHHHHHE
T ss_pred             EEEEEECC-----HHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEE-----ecCChhHHHHHHHHHHHhC
Confidence            46666655     68888877652   346777888887    8887 89999983     344441  37799999999


Q ss_pred             cCCcEEEEE
Q 017068           76 RPGGYLVIS   84 (378)
Q Consensus        76 kPGG~lvis   84 (378)
                      ||||+++++
T Consensus       169 kpgG~l~i~  177 (230)
T 1fbn_A          169 KKGGYGMIA  177 (230)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCcEEEEE
Confidence            999999996

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=97.69  E-value=2.4e-05  Score=76.81  Aligned_cols=65  Identities=12%  Similarity=-0.078  Sum_probs=53.6

Q ss_pred             HHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           18 KAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        18 e~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +.+++.|+++ ..+.+..+|... |+|++  |+|++..++|||+++. .++|+++.|+|||||++++...
T Consensus       236 ~~~~~~a~~~-~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  301 (368)
T 3reo_A          236 PHVIQDAPAF-SGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEY  301 (368)
T ss_dssp             HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             HHHHHhhhhc-CCCEEEecCCCC-CCCCC--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            4677777654 357788888876 88865  9999999999998865 4789999999999999999765

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.69  E-value=3.6e-05  Score=69.23  Aligned_cols=71  Identities=8%  Similarity=0.008  Sum_probs=54.4

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCC---CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEE
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGI---PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYL   81 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~---~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~l   81 (378)
                      .|+++++     ++.+++.|+++..   .+.+..+|+.....++++||+|++..+++|+.       .++.|+|||||++
T Consensus        94 ~v~~vD~-----~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~l  161 (231)
T 1vbf_A           94 KVVSVEI-----NEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLL-------CKPYEQLKEGGIM  161 (231)
T ss_dssp             EEEEEES-----CHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEE
T ss_pred             EEEEEeC-----CHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcHHHHH-------HHHHHHcCCCcEE
Confidence            3555554     4789999988732   56778888776333578999999999887764       4789999999999


Q ss_pred             EEEcCC
Q 017068           82 VISGPP   87 (378)
Q Consensus        82 vis~pp   87 (378)
                      +++.++
T Consensus       162 ~~~~~~  167 (231)
T 1vbf_A          162 ILPIGV  167 (231)
T ss_dssp             EEEECS
T ss_pred             EEEEcC
Confidence            998763

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=97.68  E-value=7.2e-05  Score=72.60  Aligned_cols=75  Identities=15%  Similarity=0.080  Sum_probs=54.8

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccc---c-CChHHHHHHHhhccc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF---T-AYNATYLIEVDRLLR   76 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw---~-~~~~~~L~Ev~RVLk   76 (378)
                      .|+++++.     +.+++.|+++    ++...+..+|...  +++++||+|+|+..+++-   . +....+++++.|+||
T Consensus       222 ~v~~vD~s-----~~~l~~a~~~~~~~~~~~~~~~~d~~~--~~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lk  294 (343)
T 2pjd_A          222 RLTLCDVS-----APAVEASRATLAANGVEGEVFASNVFS--EVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLN  294 (343)
T ss_dssp             BCEEEESB-----HHHHHHHHHHHHHTTCCCEEEECSTTT--TCCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEE
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHhCCCCEEEEccccc--cccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCC
Confidence            45555554     6888888775    5566666677644  558899999999877541   1 122489999999999


Q ss_pred             CCcEEEEEcC
Q 017068           77 PGGYLVISGP   86 (378)
Q Consensus        77 PGG~lvis~p   86 (378)
                      |||.+++..+
T Consensus       295 pgG~l~i~~~  304 (343)
T 2pjd_A          295 SGGELRIVAN  304 (343)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCcEEEEEEc
Confidence            9999999765

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.67  E-value=3e-06  Score=83.02  Aligned_cols=97  Identities=14%  Similarity=0.231  Sum_probs=63.1

Q ss_pred             CCCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCCcchHHHHh-hccccccccccccCCCCCCccccccccCcccc
Q 017068          222 TPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYD-RGLIGVYHDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       222 ~~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~~~l~~i~e-RGlig~~~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      ......|||+|||+|.++.+|.++  .+-   ++-.|.+..+..+-+ .++--+.+|..++   +|. ||+|.+..++..
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~---~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---~~~-~D~v~~~~~lh~  279 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKYPLIK---GINFDLPQVIENAPPLSGIEHVGGDMFAS---VPQ-GDAMILKAVCHN  279 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHTTCCCCTTEEEEECCTTTC---CCC-EEEEEEESSGGG
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHCCCCe---EEEeChHHHHHhhhhcCCCEEEeCCcccC---CCC-CCEEEEeccccc
Confidence            345689999999999999988753  232   222232222222211 1222234455444   344 999999999987


Q ss_pred             ccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      |.+     ..|  ..+|-++-|+|+|||.++|.|
T Consensus       280 ~~d-----~~~--~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          280 WSD-----EKC--IEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             SCH-----HHH--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCH-----HHH--HHHHHHHHHhcCCCCEEEEEE
Confidence            751     112  379999999999999999874

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.67  E-value=2.6e-05  Score=76.49  Aligned_cols=65  Identities=17%  Similarity=0.013  Sum_probs=53.9

Q ss_pred             HHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           18 KAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        18 e~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +.+++.|+++ ..+.+..+|... |+|++  |+|++..++|||++.. ..+|++++|+|||||++++...
T Consensus       234 ~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~  299 (364)
T 3p9c_A          234 PHVISEAPQF-PGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQC  299 (364)
T ss_dssp             HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             HHHHHhhhhc-CCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            3677777654 357888899877 88875  9999999999998764 5889999999999999999765

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=97.66  E-value=1e-05  Score=74.41  Aligned_cols=117  Identities=15%  Similarity=0.165  Sum_probs=67.2

Q ss_pred             eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhh------------cc--cc-ccccccccCCC-C-CC
Q 017068          226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR------------GL--IG-VYHDWCEPFST-Y-PR  285 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eR------------Gl--ig-~~~~w~~~f~t-y-pr  285 (378)
                      ..|||+|||+|+|+..|...  ..   +|+-.|.+ ..+..+-++            |+  +- +..|..+.++. + +.
T Consensus        51 ~~vLDiGcG~G~~~~~la~~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~  127 (246)
T 2vdv_E           51 VTIADIGCGFGGLMIDLSPAFPED---LILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG  127 (246)
T ss_dssp             EEEEEETCTTSHHHHHHHHHSTTS---EEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred             CEEEEEcCCCCHHHHHHHHhCCCC---CEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence            57999999999999888753  23   55666655 566555433            54  11 22333322321 2 36


Q ss_pred             ccccccccCccc-cccCCCCCCCCCCccceeeeecccccCCCeEEEe-CCHHHHHHHHHHHhcC
Q 017068          286 TYDLIHVSGIES-LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTV  347 (378)
Q Consensus       286 tyDliH~~~~~~-~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-d~~~~~~~~~~~~~~l  347 (378)
                      ++|.|...  |. .|........+--...++-++-|+|+|||.+++. +..+..+.+.+.+..-
T Consensus       128 ~~d~v~~~--~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~  189 (246)
T 2vdv_E          128 QLSKMFFC--FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEH  189 (246)
T ss_dssp             CEEEEEEE--SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHS
T ss_pred             ccCEEEEE--CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhC
Confidence            78877632  11 1110000111111247899999999999999884 6666666666544443

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=97.65  E-value=7.4e-05  Score=72.14  Aligned_cols=74  Identities=20%  Similarity=0.257  Sum_probs=56.0

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRP   77 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkP   77 (378)
                      .++++++ |     .+++.|+++    ++  .+.+..+|... ++|.+ ||+|++..+++||.++. ..+++++.|+|||
T Consensus       209 ~~~~~D~-~-----~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~-~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p  280 (360)
T 1tw3_A          209 SATVLEM-A-----GTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPRK-ADAIILSFVLLNWPDHDAVRILTRCAEALEP  280 (360)
T ss_dssp             EEEEEEC-T-----THHHHHHHHHHHTTCTTTEEEEECCTTS-CCSSC-EEEEEEESCGGGSCHHHHHHHHHHHHHTEEE
T ss_pred             EEEEecC-H-----HHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCCC-ccEEEEcccccCCCHHHHHHHHHHHHHhcCC
Confidence            3555555 4     456666553    44  47788888754 56654 99999999999998764 4899999999999


Q ss_pred             CcEEEEEcC
Q 017068           78 GGYLVISGP   86 (378)
Q Consensus        78 GG~lvis~p   86 (378)
                      ||++++..+
T Consensus       281 gG~l~i~e~  289 (360)
T 1tw3_A          281 GGRILIHER  289 (360)
T ss_dssp             EEEEEEEEC
T ss_pred             CcEEEEEEE
Confidence            999999865

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.64  E-value=4.2e-06  Score=75.01  Aligned_cols=126  Identities=10%  Similarity=0.066  Sum_probs=73.6

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc----cc-ccccccccCCCC-CCc-ccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL----IG-VYHDWCEPFSTY-PRT-YDLIHVS  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl----ig-~~~~w~~~f~ty-prt-yDliH~~  293 (378)
                      ..|||+|||+|.|+..++.+..  -.|+-.|.+ .++..+-++    |+    +- +..|..+..+.. +.+ ||+|-++
T Consensus        55 ~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           55 SECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            4799999999999987654432  156777766 666655443    33    11 122332222222 468 9999987


Q ss_pred             CccccccCCCCCCCCCCccceeeee--cccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEEEEe
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEM--DRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATK  371 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~Em--DRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K  371 (378)
                      ..|..          -....++-++  -|+|+|||.+++......   +.+.  .-.|......    ..+...+.+.+|
T Consensus       133 ~~~~~----------~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~---~~~~--~~~~~~~~~~----~yG~~~~~~~~~  193 (201)
T 2ift_A          133 PPFHF----------NLAEQAISLLCENNWLKPNALIYVETEKDK---PLIT--PENWTLLKEK----TTGIVSYRLYQN  193 (201)
T ss_dssp             CCSSS----------CHHHHHHHHHHHTTCEEEEEEEEEEEESSS---CCCC--CTTEEEEEEE----EETTEEEEEEEE
T ss_pred             CCCCC----------ccHHHHHHHHHhcCccCCCcEEEEEECCCC---Cccc--cchhHHHHHH----hcCCEEEEEEec
Confidence            65431          1234667777  789999999999865433   1111  1236554321    124566666665


Q ss_pred             c
Q 017068          372 S  372 (378)
Q Consensus       372 ~  372 (378)
                      .
T Consensus       194 ~  194 (201)
T 2ift_A          194 L  194 (201)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.64  E-value=1.3e-05  Score=77.35  Aligned_cols=100  Identities=13%  Similarity=0.097  Sum_probs=52.9

Q ss_pred             eEEEecCCcceeeeeeccCCC-eeEEEeccCCCCcchHHHH-h-hcc--ccccccccccCCCCCCccccccccCccc--c
Q 017068          226 RNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKSSTLSVIY-D-RGL--IGVYHDWCEPFSTYPRTYDLIHVSGIES--L  298 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~~~l~~i~-e-RGl--ig~~~~w~~~f~typrtyDliH~~~~~~--~  298 (378)
                      ..|||+|||.|+|+..|..+. |.-+-+....++.++..+. + .|.  +-+... ...+..-+.+||+|.|+..++  .
T Consensus        84 ~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~D~~~l~~~~fD~V~sd~~~~~g~  162 (305)
T 2p41_A           84 GKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSG-VDVFFIPPERCDTLLCDIGESSPN  162 (305)
T ss_dssp             EEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS-CCTTTSCCCCCSEEEECCCCCCSS
T ss_pred             CEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHhhhcCCCCeEEEec-cccccCCcCCCCEEEECCccccCc
Confidence            589999999999999988773 3222221000111211110 1 111  111111 011111247899999986654  1


Q ss_pred             ccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      +.     .+.-....+|-++-|+|+|||.|++.
T Consensus       163 ~~-----~d~~~~l~~L~~~~~~LkpGG~~v~k  190 (305)
T 2p41_A          163 PT-----VEAGRTLRVLNLVENWLSNNTQFCVK  190 (305)
T ss_dssp             HH-----HHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             ch-----hhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            10     00000013678899999999999985

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.64  E-value=1.8e-05  Score=71.66  Aligned_cols=106  Identities=9%  Similarity=0.047  Sum_probs=71.1

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCCCCCCccccccccCcc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFSTYPRTYDLIHVSGIE  296 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~typrtyDliH~~~~~  296 (378)
                      .+|||+|||.|.++..|.....   +|+..|.+ ..+..+-++    |+   +- ...|..+.+. -+.+||+|.++.  
T Consensus        93 ~~vldiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~--  166 (248)
T 2yvl_A           93 KRVLEFGTGSGALLAVLSEVAG---EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV-PEGIFHAAFVDV--  166 (248)
T ss_dssp             CEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC-CTTCBSEEEECS--
T ss_pred             CEEEEeCCCccHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc-CCCcccEEEECC--
Confidence            4899999999999998887633   66777765 677666655    33   11 2334444331 136899998731  


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-HHHHHHHHHHHhcCCce
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWT  350 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-~~~~~~~~~~~~~l~W~  350 (378)
                                  -+...++-++-|+|+|||.+++... .+.+.++.+.++.. |.
T Consensus       167 ------------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~  208 (248)
T 2yvl_A          167 ------------REPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY-FG  208 (248)
T ss_dssp             ------------SCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT-EE
T ss_pred             ------------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CC
Confidence                        1224688899999999999999876 45666666655544 54

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.63  E-value=5.6e-05  Score=69.10  Aligned_cols=65  Identities=17%  Similarity=0.273  Sum_probs=51.8

Q ss_pred             CChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.++.+++.|+++    |++  +.+..+|+.. ++++++||+|++     +.+++. .+++++.|+|||||++++..+
T Consensus       125 D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~D~v~~-----~~~~~~-~~l~~~~~~L~~gG~l~~~~~  195 (255)
T 3mb5_A          125 EIREDFAKLAWENIKWAGFDDRVTIKLKDIYE-GIEEENVDHVIL-----DLPQPE-RVVEHAAKALKPGGFFVAYTP  195 (255)
T ss_dssp             CSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG-CCCCCSEEEEEE-----CSSCGG-GGHHHHHHHEEEEEEEEEEES
T ss_pred             ecCHHHHHHHHHHHHHcCCCCceEEEECchhh-ccCCCCcCEEEE-----CCCCHH-HHHHHHHHHcCCCCEEEEEEC
Confidence            4556888888876    543  6778888764 488999999997     345555 899999999999999999876

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=97.62  E-value=5.3e-05  Score=72.93  Aligned_cols=76  Identities=20%  Similarity=0.190  Sum_probs=56.7

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCCC-CCCCceeEEEecCccccccCCh-HHHHHHHhhccc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLP-FPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLR   76 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~LP-fpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLk   76 (378)
                      .++++++ |     .+++.|+++    +.  .+.+..+|....+ ++.+.||+|+|..+++||.++. ..+|+++.|+||
T Consensus       205 ~~~~~D~-~-----~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~  278 (352)
T 3mcz_A          205 TGQIWDL-P-----TTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVK  278 (352)
T ss_dssp             EEEEEEC-G-----GGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEE
T ss_pred             eEEEEEC-H-----HHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcC
Confidence            4566666 4     344444443    44  3678888887766 2456699999999999998752 489999999999


Q ss_pred             CCcEEEEEcC
Q 017068           77 PGGYLVISGP   86 (378)
Q Consensus        77 PGG~lvis~p   86 (378)
                      |||++++...
T Consensus       279 pgG~l~i~e~  288 (352)
T 3mcz_A          279 PGGALLILTM  288 (352)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCEEEEEEe
Confidence            9999998754

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.61  E-value=0.00038  Score=61.49  Aligned_cols=90  Identities=13%  Similarity=0.031  Sum_probs=61.8

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      .|+++++.     +.+++.|+++    ++ .+.+..+|+.......++||+|++..++.   +.. .+++++.|+|||||
T Consensus        66 ~v~~vD~s-----~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~---~~~-~~l~~~~~~LkpgG  136 (204)
T 3e05_A           66 RIFALERN-----PQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGG---MLE-EIIDAVDRRLKSEG  136 (204)
T ss_dssp             EEEEEECC-----HHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCCTT---CHH-HHHHHHHHHCCTTC
T ss_pred             EEEEEeCC-----HHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCCCc---CHH-HHHHHHHHhcCCCe
Confidence            46666655     6788888775    44 36777888755544457899999987653   334 89999999999999


Q ss_pred             EEEEEcCCCCCCccchHHHHHHHHHHHhce
Q 017068           80 YLVISGPPVQWPKQDKEWADLQAVARALCY  109 (378)
Q Consensus        80 ~lvis~pp~~~~~~~~~w~~l~~l~~~lcw  109 (378)
                      ++++..+..      .....+....+...|
T Consensus       137 ~l~~~~~~~------~~~~~~~~~l~~~g~  160 (204)
T 3e05_A          137 VIVLNAVTL------DTLTKAVEFLEDHGY  160 (204)
T ss_dssp             EEEEEECBH------HHHHHHHHHHHHTTC
T ss_pred             EEEEEeccc------ccHHHHHHHHHHCCC
Confidence            999986521      123344455555555

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.61  E-value=3.6e-05  Score=68.05  Aligned_cols=91  Identities=13%  Similarity=0.149  Sum_probs=62.5

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      .|++++++     +.+++.|+++    +.. +.+..+|...  +++++||+|+|...+.+.    ..+++++.|+|||||
T Consensus        85 ~v~~vD~s-----~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~fD~i~~~~~~~~~----~~~l~~~~~~L~~gG  153 (205)
T 3grz_A           85 SVLATDIS-----DESMTAAEENAALNGIYDIALQKTSLLA--DVDGKFDLIVANILAEIL----LDLIPQLDSHLNEDG  153 (205)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHTTCCCCEEEESSTTT--TCCSCEEEEEEESCHHHH----HHHGGGSGGGEEEEE
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHcCCCceEEEeccccc--cCCCCceEEEECCcHHHH----HHHHHHHHHhcCCCC
Confidence            45555555     6888888775    544 6777777644  567999999998766543    388999999999999


Q ss_pred             EEEEEcCCCCCCccchHHHHHHHHHHHhceeee
Q 017068           80 YLVISGPPVQWPKQDKEWADLQAVARALCYELI  112 (378)
Q Consensus        80 ~lvis~pp~~~~~~~~~w~~l~~l~~~lcw~~~  112 (378)
                      +++++....      .....+..+.+...++.+
T Consensus       154 ~l~~~~~~~------~~~~~~~~~~~~~Gf~~~  180 (205)
T 3grz_A          154 QVIFSGIDY------LQLPKIEQALAENSFQID  180 (205)
T ss_dssp             EEEEEEEEG------GGHHHHHHHHHHTTEEEE
T ss_pred             EEEEEecCc------ccHHHHHHHHHHcCCceE
Confidence            999975411      112345555555555443

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=97.61  E-value=3e-05  Score=73.38  Aligned_cols=100  Identities=12%  Similarity=0.070  Sum_probs=66.3

Q ss_pred             CCeeEEEecCCcc---eeeeeeccC--CCeeEEEeccCCCC-cchHHHHhhc----ccc-cccccccc-----C----CC
Q 017068          223 PAIRNIMDMNAFF---GGFAAALTS--DPVWVMNVVPARKS-STLSVIYDRG----LIG-VYHDWCEP-----F----ST  282 (378)
Q Consensus       223 ~~iR~vlDm~ag~---g~faa~L~~--~~vwvmnv~p~~~~-~~l~~i~eRG----lig-~~~~w~~~-----f----~t  282 (378)
                      ..++.|||+|||+   |.++..+..  ...   .|+-.|.+ .+|..+-++-    -+- +..|..+.     .    .+
T Consensus        76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~---~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~  152 (274)
T 2qe6_A           76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDA---RVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRM  152 (274)
T ss_dssp             TCCCEEEEETCCSCCSSCHHHHHHHHCTTC---EEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred             cCCCEEEEECCCCCCCChHHHHHHHhCCCC---EEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhcc
Confidence            4579999999999   987655532  222   45666765 7776655442    111 12222211     0    01


Q ss_pred             CC-CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          283 YP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       283 yp-rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      +| .+||+|-+..++..+.      +. ....+|-|+-|+|+|||++++.+
T Consensus       153 ~d~~~~d~v~~~~vlh~~~------d~-~~~~~l~~~~~~L~pGG~l~i~~  196 (274)
T 2qe6_A          153 IDFSRPAAIMLVGMLHYLS------PD-VVDRVVGAYRDALAPGSYLFMTS  196 (274)
T ss_dssp             CCTTSCCEEEETTTGGGSC------TT-THHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCCCCEEEEEechhhhCC------cH-HHHHHHHHHHHhCCCCcEEEEEE
Confidence            33 4899999998888775      22 45789999999999999999985

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=97.61  E-value=0.00011  Score=70.99  Aligned_cols=73  Identities=18%  Similarity=0.199  Sum_probs=52.8

Q ss_pred             CeEEEecCCCCChHHHHHHHHH----cCCC--eEEEEcccCCCCCCCCceeEEEecCcccccc--CChHHHHHHHhhccc
Q 017068            5 NILTLSFAPRDSHKAQIQFALE----RGIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT--AYNATYLIEVDRLLR   76 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~e----rg~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~--~~~~~~L~Ev~RVLk   76 (378)
                      .|+++++.+      +++.|++    .+..  +.+..+|++.+++++++||+|+|.....+..  .....++.++.|+||
T Consensus        63 ~v~~vD~s~------~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lk  136 (328)
T 1g6q_1           63 HVIGVDMSS------IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLV  136 (328)
T ss_dssp             EEEEEESST------HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEE
T ss_pred             EEEEEChHH------HHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcC
Confidence            577777763      3444443    4543  6788899999999999999999874333322  222388999999999


Q ss_pred             CCcEEEE
Q 017068           77 PGGYLVI   83 (378)
Q Consensus        77 PGG~lvi   83 (378)
                      |||.++.
T Consensus       137 pgG~li~  143 (328)
T 1g6q_1          137 EGGLIFP  143 (328)
T ss_dssp             EEEEEES
T ss_pred             CCeEEEE
Confidence            9999984

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=97.60  E-value=7.6e-06  Score=83.96  Aligned_cols=110  Identities=12%  Similarity=0.146  Sum_probs=68.2

Q ss_pred             HHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCCcchHHH----Hhhcc---cc-ccccccccCCC
Q 017068          211 YYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVI----YDRGL---IG-VYHDWCEPFST  282 (378)
Q Consensus       211 ~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~~~l~~i----~eRGl---ig-~~~~w~~~f~t  282 (378)
                      .|.+.+...+....-..|||+|||+|.++..|...+.  ..|...|.+.++..+    .+.|+   +- +..|+.+ + .
T Consensus       145 ~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~-~-~  220 (480)
T 3b3j_A          145 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEE-V-S  220 (480)
T ss_dssp             HHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTT-C-C
T ss_pred             HHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhh-C-c
Confidence            4665554433322335899999999999988876543  134555544444333    33355   22 2334443 2 2


Q ss_pred             CCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          283 YPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       283 yprtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      +|..||+|.+...+..+.       .-.+...+.++-|+|+|||.+++.
T Consensus       221 ~~~~fD~Ivs~~~~~~~~-------~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          221 LPEQVDIIISEPMGYMLF-------NERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             CSSCEEEEECCCCHHHHT-------CHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             cCCCeEEEEEeCchHhcC-------cHHHHHHHHHHHHhcCCCCEEEEE
Confidence            457899999987755443       112345677899999999999853

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.60  E-value=8.2e-05  Score=69.68  Aligned_cols=72  Identities=17%  Similarity=0.153  Sum_probs=51.7

Q ss_pred             eEEEecCCCCChHHHHHHHHHcC---CCeEEEEccc---CCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068            6 ILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGT---RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         6 v~~ms~ap~D~se~~vq~A~erg---~~~~~~v~da---e~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      |+|++++     +.|++.|+++.   .++....+++   +..|+.+++||+|+|..  .| ++....++.|+.|+|||||
T Consensus       105 V~avD~s-----~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~--~~-~~~~~~~l~~~~r~LKpGG  176 (233)
T 4df3_A          105 IYGVEFA-----PRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADV--AQ-PEQAAIVVRNARFFLRDGG  176 (233)
T ss_dssp             EEEEECC-----HHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEECC--CC-TTHHHHHHHHHHHHEEEEE
T ss_pred             EEEEeCC-----HHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEec--cC-ChhHHHHHHHHHHhccCCC
Confidence            6777766     57888877652   2344455543   45678899999999753  22 3333489999999999999


Q ss_pred             EEEEEc
Q 017068           80 YLVISG   85 (378)
Q Consensus        80 ~lvis~   85 (378)
                      +++++.
T Consensus       177 ~lvI~i  182 (233)
T 4df3_A          177 YMLMAI  182 (233)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999874

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=97.60  E-value=3.2e-05  Score=74.97  Aligned_cols=72  Identities=11%  Similarity=-0.007  Sum_probs=56.5

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccC---CcE
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRP---GGY   80 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkP---GG~   80 (378)
                      .++++++      +.+++.|++. ..+.+..+|... ++|+  ||+|++..+++||.+.. ..+|+++.|+|||   ||+
T Consensus       214 ~~~~~D~------~~~~~~a~~~-~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~  283 (352)
T 1fp2_A          214 KCIVFDR------PQVVENLSGS-NNLTYVGGDMFT-SIPN--ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGK  283 (352)
T ss_dssp             EEEEEEC------HHHHTTCCCB-TTEEEEECCTTT-CCCC--CSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCE
T ss_pred             eEEEeeC------HHHHhhcccC-CCcEEEeccccC-CCCC--ccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcE
Confidence            3555554      3778777664 237788888765 7774  99999999999997754 4899999999999   999


Q ss_pred             EEEEcC
Q 017068           81 LVISGP   86 (378)
Q Consensus        81 lvis~p   86 (378)
                      +++..+
T Consensus       284 l~i~e~  289 (352)
T 1fp2_A          284 VTIIDM  289 (352)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999865

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=97.60  E-value=5.7e-05  Score=73.19  Aligned_cols=53  Identities=15%  Similarity=0.113  Sum_probs=45.9

Q ss_pred             eEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           31 AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        31 ~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +.+..+|.. .|+|  +||+|++..+++||++++ ..+|+++.|+|||||++++...
T Consensus       234 v~~~~~d~~-~~~p--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~  287 (348)
T 3lst_A          234 WKVVEGDFL-REVP--HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA  287 (348)
T ss_dssp             EEEEECCTT-TCCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred             eEEEecCCC-CCCC--CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            678888875 4666  899999999999999874 5999999999999999999765

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.60  E-value=1.2e-05  Score=76.75  Aligned_cols=121  Identities=16%  Similarity=0.286  Sum_probs=78.9

Q ss_pred             ccccccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCccee----eeeeccCC-C----eeEEEeccCCCC-cchHHH
Q 017068          195 YDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGG----FAAALTSD-P----VWVMNVVPARKS-STLSVI  264 (378)
Q Consensus       195 ~~~F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~----faa~L~~~-~----vwvmnv~p~~~~-~~l~~i  264 (378)
                      ...|-.|..+|..-.+..+.    . . +.+ .|+|+|||+|-    +|..|.+. +    -|  .|..+|-+ ..|..+
T Consensus        83 ~t~FfRd~~~f~~l~~~llp----~-~-~~~-rIld~GCgTGee~ysiAi~L~e~~~~~~~~~--~I~atDis~~~L~~A  153 (274)
T 1af7_A           83 LTAFFREAHHFPILAEHARR----R-H-GEY-RVWSAAASTGEEPYSIAITLADALGMAPGRW--KVFASDIDTEVLEKA  153 (274)
T ss_dssp             CCCTTTTTTHHHHHHHHHHH----S-C-SCE-EEEESCCTTTHHHHHHHHHHHHHHCSCTTSE--EEEEEESCHHHHHHH
T ss_pred             CccccCChHHHHHHHHHccC----C-C-CCc-EEEEeeccCChhHHHHHHHHHHhcccCCCCe--EEEEEECCHHHHHHH
Confidence            34577777888765544332    1 2 234 59999999997    56555432 1    12  77888876 777765


Q ss_pred             Hhhccc-------------------------c--------------ccccccc-cCCCCCCccccccccCccccccCCCC
Q 017068          265 YDRGLI-------------------------G--------------VYHDWCE-PFSTYPRTYDLIHVSGIESLIKNPGS  304 (378)
Q Consensus       265 ~eRGli-------------------------g--------------~~~~w~~-~f~typrtyDliH~~~~~~~~~~~~~  304 (378)
                      -+ |.-                         |              ..||+.+ +|+ .+..||+|.|..++.++.    
T Consensus       154 r~-~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~-~~~~fDlI~crnvliyf~----  227 (274)
T 1af7_A          154 RS-GIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYN-VPGPFDAIFCRNVMIYFD----  227 (274)
T ss_dssp             HH-TEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCC-CCCCEEEEEECSSGGGSC----
T ss_pred             Hh-cCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCC-cCCCeeEEEECCchHhCC----
Confidence            43 220                         1              2356665 232 136899999998888764    


Q ss_pred             CCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          305 NKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       305 ~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                         .-....++-++-|.|+|||++++...
T Consensus       228 ---~~~~~~vl~~~~~~L~pgG~L~lg~s  253 (274)
T 1af7_A          228 ---KTTQEDILRRFVPLLKPDGLLFAGHS  253 (274)
T ss_dssp             ---HHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             ---HHHHHHHHHHHHHHhCCCcEEEEEec
Confidence               11125789999999999999999643

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=97.59  E-value=1.6e-05  Score=77.20  Aligned_cols=131  Identities=15%  Similarity=0.124  Sum_probs=76.7

Q ss_pred             eEEEecCCcceeeeeeccCCC--eeEEEeccCCCC-cchHHHHhh----ccccccccccccCCCCCCccccccccCcccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDP--VWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~--vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      .+|||+|||+|.++..|....  .   +|+-.|.+ ..+..+-++    |+-..+. +...++..+.+||+|.|+..|..
T Consensus       198 ~~VLDlGcG~G~~~~~la~~~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~~~~-~~d~~~~~~~~fD~Iv~~~~~~~  273 (343)
T 2pjd_A          198 GKVLDVGCGAGVLSVAFARHSPKI---RLTLCDVSAPAVEASRATLAANGVEGEVF-ASNVFSEVKGRFDMIISNPPFHD  273 (343)
T ss_dssp             SBCCBTTCTTSHHHHHHHHHCTTC---BCEEEESBHHHHHHHHHHHHHTTCCCEEE-ECSTTTTCCSCEEEEEECCCCCS
T ss_pred             CeEEEecCccCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHhCCCCEEE-EccccccccCCeeEEEECCCccc
Confidence            379999999999999886432  2   44566655 556554443    3321111 12222222589999999887753


Q ss_pred             ccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH--HHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEEEEec
Q 017068          299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP--EVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~--~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~  372 (378)
                      ..    ....-....++-|+-|+|+|||.+++....  ..-..++++...  ++....+      .+=+|+.++|.
T Consensus       274 g~----~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f~~--~~~~~~~------~gf~v~~~~k~  337 (343)
T 2pjd_A          274 GM----QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGF--HEVIAQT------GRFKVYRAIMT  337 (343)
T ss_dssp             SS----HHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHHSC--CEEEEEC------SSEEEEEEEC-
T ss_pred             Cc----cCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhcCc--eEEEeeC------CCEEEEEEEeC
Confidence            10    000112357899999999999999987532  233444554443  2322221      35667777664

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.58  E-value=1.3e-05  Score=78.78  Aligned_cols=97  Identities=19%  Similarity=0.175  Sum_probs=63.0

Q ss_pred             CCCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCCcchHHHHhh-ccccccccccccCCCCCCccccccccCcccc
Q 017068          222 TPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYDR-GLIGVYHDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       222 ~~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~~~l~~i~eR-Glig~~~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      ....+.|+|+|||+|.++.+|.++  .+   .++-.|-+..+..+-++ ++-=+-+|..+++   |.. |+|.+..++..
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~---p~~-D~v~~~~vlh~  271 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTI---KGVNFDLPHVISEAPQFPGVTHVGGDMFKEV---PSG-DTILMKWILHD  271 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHTTCCCCTTEEEEECCTTTCC---CCC-SEEEEESCGGG
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCC---eEEEecCHHHHHhhhhcCCeEEEeCCcCCCC---CCC-CEEEehHHhcc
Confidence            556789999999999999999742  22   12222222222222221 1222344554444   444 99999999988


Q ss_pred             ccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      |.+     .  ....+|-++-|+|+|||.++|.|
T Consensus       272 ~~d-----~--~~~~~L~~~~~~L~pgG~l~i~e  298 (364)
T 3p9c_A          272 WSD-----Q--HCATLLKNCYDALPAHGKVVLVQ  298 (364)
T ss_dssp             SCH-----H--HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCH-----H--HHHHHHHHHHHHcCCCCEEEEEE
Confidence            741     1  22578999999999999999975

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.57  E-value=2.6e-05  Score=72.84  Aligned_cols=107  Identities=14%  Similarity=0.148  Sum_probs=71.8

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----cc---c-cccccccccCCCCCCcccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GL---I-GVYHDWCEPFSTYPRTYDLIHVS  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gl---i-g~~~~w~~~f~typrtyDliH~~  293 (378)
                      .+|||+|||+|.++.+|+..   ..   +|+..|.+ ..+..+-++    |+   + -...|..+.++  +.+||+|.++
T Consensus       114 ~~VLDiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~V~~~  188 (277)
T 1o54_A          114 DRIIDTGVGSGAMCAVLARAVGSSG---KVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD--EKDVDALFLD  188 (277)
T ss_dssp             CEEEEECCTTSHHHHHHHHHTTTTC---EEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS--CCSEEEEEEC
T ss_pred             CEEEEECCcCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc--CCccCEEEEC
Confidence            37999999999999888754   34   55666755 666666554    43   1 12344554432  2689999873


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-HHHHHHHHHHHhcCCceE
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWTA  351 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-~~~~~~~~~~~~~l~W~~  351 (378)
                      .          +    ....++-++-|+|+|||.+++... .+.+.++.+.++...|..
T Consensus       189 ~----------~----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~  233 (277)
T 1o54_A          189 V----------P----DPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIR  233 (277)
T ss_dssp             C----------S----CGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEE
T ss_pred             C----------c----CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence            1          0    124688899999999999999876 445666666666566653

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.57  E-value=4.4e-05  Score=68.26  Aligned_cols=72  Identities=13%  Similarity=0.091  Sum_probs=52.4

Q ss_pred             CChHHHHHHHHHc----CC---CeEEEEcccCCCC--CCCCc-eeEEEecCccccccCChHHHHHHH--hhcccCCcEEE
Q 017068           15 DSHKAQIQFALER----GI---PAFVAMLGTRRLP--FPAFS-FDIVHCSRCLIPFTAYNATYLIEV--DRLLRPGGYLV   82 (378)
Q Consensus        15 D~se~~vq~A~er----g~---~~~~~v~dae~LP--fpd~S-FD~V~cs~~l~hw~~~~~~~L~Ev--~RVLkPGG~lv   82 (378)
                      |.|+.+++.|+++    ++   .+.+..+|+..++  +++++ ||+|++...+ +..+. ..+++++  .|+|||||.++
T Consensus        83 D~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~-~~~~~-~~~l~~~~~~~~LkpgG~l~  160 (201)
T 2ift_A           83 ELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPF-HFNLA-EQAISLLCENNWLKPNALIY  160 (201)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCS-SSCHH-HHHHHHHHHTTCEEEEEEEE
T ss_pred             ECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECCCC-CCccH-HHHHHHHHhcCccCCCcEEE
Confidence            4456888888775    44   5678888876643  25788 9999998763 43333 3788898  78999999999


Q ss_pred             EEcCCC
Q 017068           83 ISGPPV   88 (378)
Q Consensus        83 is~pp~   88 (378)
                      ++..+.
T Consensus       161 i~~~~~  166 (201)
T 2ift_A          161 VETEKD  166 (201)
T ss_dssp             EEEESS
T ss_pred             EEECCC
Confidence            976643

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=97.56  E-value=0.00014  Score=71.80  Aligned_cols=78  Identities=12%  Similarity=0.128  Sum_probs=55.0

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCCC--eEEEEcccCCCCCCCCceeEEEecCcccccc--CChHHHHHHHhhcccCCcE
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT--AYNATYLIEVDRLLRPGGY   80 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~--~~~~~~L~Ev~RVLkPGG~   80 (378)
                      .|++++++ . .-+...+.+++.++.  +.+..+|++.++++ ++||+|+|....++..  .....++.++.|+|||||.
T Consensus        88 ~V~gvD~s-~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~  164 (376)
T 3r0q_C           88 KVYAVEAT-K-MADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGV  164 (376)
T ss_dssp             EEEEEESS-T-THHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEE
T ss_pred             EEEEEccH-H-HHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeE
Confidence            57777776 2 223333444445654  78889999999998 8999999965333332  2234789999999999999


Q ss_pred             EEEEc
Q 017068           81 LVISG   85 (378)
Q Consensus        81 lvis~   85 (378)
                      ++++.
T Consensus       165 li~~~  169 (376)
T 3r0q_C          165 MYPSH  169 (376)
T ss_dssp             EESSE
T ss_pred             EEEec
Confidence            98754

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=97.56  E-value=4.2e-05  Score=73.92  Aligned_cols=73  Identities=15%  Similarity=0.143  Sum_probs=49.6

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCCCeEE-EEcccCCCC---CCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGIPAFV-AMLGTRRLP---FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY   80 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~-~v~dae~LP---fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~   80 (378)
                      .|+++|+++     .|++.|+++...+.. ...++..++   ++..+||+|+|..++++.   . .+|.|+.|+|||||+
T Consensus       110 ~V~aVDvs~-----~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~sl---~-~vL~e~~rvLkpGG~  180 (291)
T 3hp7_A          110 LVYAVDVGT-----NQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFISL---N-LILPALAKILVDGGQ  180 (291)
T ss_dssp             EEEEECSSS-----SCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSCG---G-GTHHHHHHHSCTTCE
T ss_pred             EEEEEECCH-----HHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhhH---H-HHHHHHHHHcCcCCE
Confidence            588888877     455555554333322 222333333   455679999998877654   3 889999999999999


Q ss_pred             EEEEcC
Q 017068           81 LVISGP   86 (378)
Q Consensus        81 lvis~p   86 (378)
                      |++...
T Consensus       181 lv~lvk  186 (291)
T 3hp7_A          181 VVALVK  186 (291)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            998743

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=97.56  E-value=1.3e-05  Score=74.54  Aligned_cols=93  Identities=12%  Similarity=0.170  Sum_probs=57.9

Q ss_pred             eeEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHh----hcc---ccc-cccccccCCCC------CCc
Q 017068          225 IRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYD----RGL---IGV-YHDWCEPFSTY------PRT  286 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~e----RGl---ig~-~~~w~~~f~ty------prt  286 (378)
                      -++|||+|||+|.++..|...   ..   .|+-.|.. ..+.++-+    .|+   +-+ ..|..+.++..      +.+
T Consensus        80 ~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  156 (247)
T 1sui_A           80 AKNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  156 (247)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred             cCEEEEeCCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence            368999999999998877542   33   34445543 44544433    344   111 12333322222      478


Q ss_pred             cccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          287 YDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       287 yDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ||+|.++....            +...++-++-|+|||||.+++.+
T Consensus       157 fD~V~~d~~~~------------~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          157 YDFIFVDADKD------------NYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             BSEEEECSCST------------THHHHHHHHHHHBCTTCCEEEEC
T ss_pred             EEEEEEcCchH------------HHHHHHHHHHHhCCCCeEEEEec
Confidence            99998763211            23567888899999999999975

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.56  E-value=0.00014  Score=65.31  Aligned_cols=71  Identities=13%  Similarity=-0.006  Sum_probs=53.1

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG   78 (378)
                      .|+++++.     +.+++.|+++    |++  +.+..+|+........+||+|++..++     ... +++++.|+||||
T Consensus        79 ~v~~vD~s-----~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~-----~~~-~l~~~~~~Lkpg  147 (204)
T 3njr_A           79 RAITIEPR-----ADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG-----SQA-LYDRLWEWLAPG  147 (204)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC-----CHH-HHHHHHHHSCTT
T ss_pred             EEEEEeCC-----HHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc-----cHH-HHHHHHHhcCCC
Confidence            45666555     6888888775    554  778888887743334679999987643     343 999999999999


Q ss_pred             cEEEEEcC
Q 017068           79 GYLVISGP   86 (378)
Q Consensus        79 G~lvis~p   86 (378)
                      |+++++..
T Consensus       148 G~lv~~~~  155 (204)
T 3njr_A          148 TRIVANAV  155 (204)
T ss_dssp             CEEEEEEC
T ss_pred             cEEEEEec
Confidence            99999875

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.55  E-value=7.1e-06  Score=71.76  Aligned_cols=139  Identities=14%  Similarity=0.175  Sum_probs=63.4

Q ss_pred             eEEEecCCcceeeeeeccCC-C----------eeEEEeccCCCCcchHHHHhhccccc-ccccccc-C-----CCCC-Cc
Q 017068          226 RNIMDMNAFFGGFAAALTSD-P----------VWVMNVVPARKSSTLSVIYDRGLIGV-YHDWCEP-F-----STYP-RT  286 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-~----------vwvmnv~p~~~~~~l~~i~eRGlig~-~~~w~~~-f-----~typ-rt  286 (378)
                      .+|||+|||.|.++..|..+ +          .   .|+-.|.+....  .+ +.--+ -.|.... +     ..++ .+
T Consensus        24 ~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~---~v~~vD~s~~~~--~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (196)
T 2nyu_A           24 LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVG---FVLGVDLLHIFP--LE-GATFLCPADVTDPRTSQRILEVLPGRR   97 (196)
T ss_dssp             CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCC---EEEEECSSCCCC--CT-TCEEECSCCTTSHHHHHHHHHHSGGGC
T ss_pred             CEEEEeCCCCCHHHHHHHHHhccccccccCCCc---eEEEEechhccc--CC-CCeEEEeccCCCHHHHHHHHHhcCCCC
Confidence            58999999999999888653 2          2   223333221100  00 11001 1122111 0     0122 58


Q ss_pred             cccccccCcccccc--CCCCCCCCCCccceeeeecccccCCCeEEEeCC-HHHHHHHHHHHhcCCce-EEEe-cCCCCCC
Q 017068          287 YDLIHVSGIESLIK--NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWT-AAVH-DKEPGSN  361 (378)
Q Consensus       287 yDliH~~~~~~~~~--~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-~~~~~~~~~~~~~l~W~-~~~~-~~~~~~~  361 (378)
                      ||+|.|+..+...-  ..+..........++-|+-|+|||||.+++..- .+....+.+.++.. +. +... +......
T Consensus        98 fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~-f~~v~~~~~~~~~~~  176 (196)
T 2nyu_A           98 ADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEE-FQNVRIIKPEASRKE  176 (196)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHH-EEEEEEECCC-----
T ss_pred             CcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHH-hcceEEECCcccCcc
Confidence            99999865432100  000000000013678899999999999999742 12223333333322 32 2222 1111223


Q ss_pred             CCeEEEEEEe
Q 017068          362 GREKILVATK  371 (378)
Q Consensus       362 ~~e~~l~~~K  371 (378)
                      ..|.++++..
T Consensus       177 ~~e~~~v~~g  186 (196)
T 2nyu_A          177 SSEVYFLATQ  186 (196)
T ss_dssp             ---EEEEEEE
T ss_pred             CceEEEEeee
Confidence            5688888764

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.55  E-value=1.4e-05  Score=71.12  Aligned_cols=90  Identities=16%  Similarity=0.101  Sum_probs=59.0

Q ss_pred             eEEEecCCcceeeeeeccCCC---eeEEEeccCCCC-cchHHHHhh----cc--cc-ccccccccCCCCCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSDP---VWVMNVVPARKS-STLSVIYDR----GL--IG-VYHDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~---vwvmnv~p~~~~-~~l~~i~eR----Gl--ig-~~~~w~~~f~typrtyDliH~~~  294 (378)
                      .+|||+|||.|.+++.|....   .   +|+-.|.+ ..+..+-++    |+  +- ...|..+.++ .+.+||+|.+..
T Consensus        79 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~  154 (215)
T 2yxe_A           79 MKVLEIGTGCGYHAAVTAEIVGEDG---LVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE-PLAPYDRIYTTA  154 (215)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG-GGCCEEEEEESS
T ss_pred             CEEEEECCCccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-CCCCeeEEEECC
Confidence            489999999999998886532   3   34555554 666665554    32  11 1233333332 136899999987


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP  334 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~  334 (378)
                      .+...               .-++-|+|||||.+++.-..
T Consensus       155 ~~~~~---------------~~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          155 AGPKI---------------PEPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             BBSSC---------------CHHHHHTEEEEEEEEEEESS
T ss_pred             chHHH---------------HHHHHHHcCCCcEEEEEECC
Confidence            66533               23788999999999987543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=97.54  E-value=3.5e-06  Score=72.91  Aligned_cols=96  Identities=18%  Similarity=0.219  Sum_probs=59.5

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hcc---cc-ccccccccCCCC---CCcccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGL---IG-VYHDWCEPFSTY---PRTYDLIHVS  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGl---ig-~~~~w~~~f~ty---prtyDliH~~  293 (378)
                      .+|||+|||+|.++..++.++.  -+|+-.|.+ ..++.+-+    .|+   +- +..|+.+..+..   +.+||+|.++
T Consensus        46 ~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~  123 (187)
T 2fhp_A           46 GMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD  123 (187)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence            4899999999999987765542  145566654 55544433    233   21 223444322211   4789999998


Q ss_pred             CccccccCCCCCCCCCCccceeeee--cccccCCCeEEEeCC
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEM--DRMLRPEGTVVVRDS  333 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~Em--DRiLRPgG~~ii~d~  333 (378)
                      ..|..-          ....++-++  -|+|+|||.+++...
T Consensus       124 ~~~~~~----------~~~~~~~~l~~~~~L~~gG~l~~~~~  155 (187)
T 2fhp_A          124 PPYAKQ----------EIVSQLEKMLERQLLTNEAVIVCETD  155 (187)
T ss_dssp             CCGGGC----------CHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             CCCCch----------hHHHHHHHHHHhcccCCCCEEEEEeC
Confidence            665411          123445455  999999999999743

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=97.54  E-value=9.1e-05  Score=67.15  Aligned_cols=78  Identities=18%  Similarity=0.254  Sum_probs=53.0

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCC---CCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRR---LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY   80 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~---LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~   80 (378)
                      ..|++++++|..+ +.+++.|+++ ..+.+..+|+..   +|+++++||+|+|...   .++....++.++.|+|||||+
T Consensus       103 ~~v~gvD~s~~~i-~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~---~~~~~~~~~~~~~~~LkpgG~  177 (233)
T 2ipx_A          103 GLVYAVEFSHRSG-RDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFADVA---QPDQTRIVALNAHTFLRNGGH  177 (233)
T ss_dssp             CEEEEECCCHHHH-HHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEECCC---CTTHHHHHHHHHHHHEEEEEE
T ss_pred             cEEEEEECCHHHH-HHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEcCC---CccHHHHHHHHHHHHcCCCeE
Confidence            3466666554210 2345566554 457788888776   6777899999998543   122223568899999999999


Q ss_pred             EEEEcC
Q 017068           81 LVISGP   86 (378)
Q Consensus        81 lvis~p   86 (378)
                      ++++..
T Consensus       178 l~i~~~  183 (233)
T 2ipx_A          178 FVISIK  183 (233)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            999754

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=97.53  E-value=0.00016  Score=66.36  Aligned_cols=72  Identities=21%  Similarity=0.256  Sum_probs=53.8

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc------------CC-CeEEEEcccCC-CC--CCCCceeEEEecCccccccCCh----
Q 017068            5 NILTLSFAPRDSHKAQIQFALER------------GI-PAFVAMLGTRR-LP--FPAFSFDIVHCSRCLIPFTAYN----   64 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er------------g~-~~~~~v~dae~-LP--fpd~SFD~V~cs~~l~hw~~~~----   64 (378)
                      +|++++++     +.+++.|+++            ++ ++.+..+|+.. ++  |++++||.|+..     ++++.    
T Consensus        75 ~v~gvD~s-----~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~d~v~~~-----~p~p~~k~~  144 (246)
T 2vdv_E           75 LILGMEIR-----VQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLSKMFFC-----FPDPHFKQR  144 (246)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCEEEEEEE-----SCCCC----
T ss_pred             CEEEEEcC-----HHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccccCEEEEE-----CCCcccccc
Confidence            56777665     5777777653            44 46788888876 77  889999999853     33332    


Q ss_pred             --------HHHHHHHhhcccCCcEEEEEcC
Q 017068           65 --------ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        65 --------~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                              ..++.++.|+|||||+|++.+.
T Consensus       145 ~~~~r~~~~~~l~~~~~~LkpgG~l~~~td  174 (246)
T 2vdv_E          145 KHKARIITNTLLSEYAYVLKEGGVVYTITD  174 (246)
T ss_dssp             --CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred             hhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence                    3799999999999999999653

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.53  E-value=4.1e-05  Score=70.25  Aligned_cols=76  Identities=12%  Similarity=0.096  Sum_probs=48.7

Q ss_pred             CeEEEecCCCCChHHHHHHH---HH----cCCC-eEEEEcccCCCCCC-CCceeEEEecCccc----cccCChHHHHHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFA---LE----RGIP-AFVAMLGTRRLPFP-AFSFDIVHCSRCLI----PFTAYNATYLIEV   71 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A---~e----rg~~-~~~~v~dae~LPfp-d~SFD~V~cs~~l~----hw~~~~~~~L~Ev   71 (378)
                      .|++++++|    ++|++.|   ++    .+++ +.+..++++.+|.. .+.||.|++.+...    |+......+++|+
T Consensus        50 ~v~GvD~s~----~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~  125 (225)
T 3p2e_A           50 FYIGIDPVK----ENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNV  125 (225)
T ss_dssp             EEEEECSCC----GGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHH
T ss_pred             EEEEEeCCH----HHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEEeCCCcHHhhhhhcchHHHHHHH
Confidence            467777664    4666655   43    3443 77888999988642 25566665543211    1111123789999


Q ss_pred             hhcccCCcEEEEE
Q 017068           72 DRLLRPGGYLVIS   84 (378)
Q Consensus        72 ~RVLkPGG~lvis   84 (378)
                      .|+|||||+|++.
T Consensus       126 ~r~LkpGG~l~i~  138 (225)
T 3p2e_A          126 ADLAKKEAHFEFV  138 (225)
T ss_dssp             HTTEEEEEEEEEE
T ss_pred             HHhcCCCcEEEEE
Confidence            9999999999984

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=97.52  E-value=1.2e-05  Score=80.14  Aligned_cols=112  Identities=16%  Similarity=0.140  Sum_probs=71.2

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc-ccc-cccccccCCCCCCccccccccCcccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IGV-YHDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig~-~~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      .+|||+|||+|.++..|.....   .|+-+|.+ ..+..+-++    |+ +-+ ..|..+ ++.-+.+||+|.|+..|..
T Consensus       235 ~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~-~~~~~~~fD~Ii~npp~~~  310 (381)
T 3dmg_A          235 RQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDE-ALTEEARFDIIVTNPPFHV  310 (381)
T ss_dssp             CEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTT-TSCTTCCEEEEEECCCCCT
T ss_pred             CEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhh-ccccCCCeEEEEECCchhh
Confidence            4899999999999999988765   66777765 666544432    32 222 223332 2221379999999877763


Q ss_pred             ccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH--HHHHHHHHHHh
Q 017068          299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP--EVIDKVSRIAN  345 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~--~~~~~~~~~~~  345 (378)
                      -.    ....-....++-++-|+|+|||.+++....  .+-..+++...
T Consensus       311 ~~----~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~  355 (381)
T 3dmg_A          311 GG----AVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFG  355 (381)
T ss_dssp             TC----SSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHS
T ss_pred             cc----cccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhc
Confidence            21    001122357888999999999999997432  23444444443

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.52  E-value=2.9e-05  Score=72.05  Aligned_cols=107  Identities=13%  Similarity=0.184  Sum_probs=67.0

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh-----c-c---cc-ccccccccCCCCCCcccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR-----G-L---IG-VYHDWCEPFSTYPRTYDLIH  291 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR-----G-l---ig-~~~~w~~~f~typrtyDliH  291 (378)
                      .+|||+|||+|.++.+|...   ..   +|...|.+ ..+..+-++     | +   +- ...|..+. +.-+.+||+|.
T Consensus       101 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~-~~~~~~~D~v~  176 (280)
T 1i9g_A          101 ARVLEAGAGSGALTLSLLRAVGPAG---QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-ELPDGSVDRAV  176 (280)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-CCCTTCEEEEE
T ss_pred             CEEEEEcccccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc-CCCCCceeEEE
Confidence            37999999999999988763   33   45666655 666655554     4 2   11 22333332 21147899998


Q ss_pred             ccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-HHHHHHHHHHHhc-CCce
Q 017068          292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANT-VRWT  350 (378)
Q Consensus       292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-~~~~~~~~~~~~~-l~W~  350 (378)
                      ++..              ....+|-++-|+|+|||.+++... .+.+.++.+.++. ..|.
T Consensus       177 ~~~~--------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~  223 (280)
T 1i9g_A          177 LDML--------------APWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT  223 (280)
T ss_dssp             EESS--------------CGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred             ECCc--------------CHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence            7311              224689999999999999999764 3444444443333 4443

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.52  E-value=8.8e-05  Score=71.13  Aligned_cols=69  Identities=10%  Similarity=0.118  Sum_probs=55.4

Q ss_pred             eEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068            6 ILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY   80 (378)
Q Consensus         6 v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~   80 (378)
                      |++++++     +.+++.|+++    |++ +.+..+|....+.++++||+|++..+++|..       .++.++|||||.
T Consensus       103 v~gvD~s-----~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~-------~~~~~~LkpgG~  170 (317)
T 1dl5_A          103 VVSVEYS-----RKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGR  170 (317)
T ss_dssp             EEEEESC-----HHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEE
T ss_pred             EEEEECC-----HHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcCCHHHHH-------HHHHHhcCCCcE
Confidence            6666655     6888888876    443 6788889888666788999999999887764       578999999999


Q ss_pred             EEEEcC
Q 017068           81 LVISGP   86 (378)
Q Consensus        81 lvis~p   86 (378)
                      ++++..
T Consensus       171 lvi~~~  176 (317)
T 1dl5_A          171 VIVPIN  176 (317)
T ss_dssp             EEEEBC
T ss_pred             EEEEEC
Confidence            999865

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=97.52  E-value=0.0001  Score=68.26  Aligned_cols=77  Identities=14%  Similarity=0.188  Sum_probs=54.1

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCCCC--CCCCceeEEEecCccccc-----cC---------
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLP--FPAFSFDIVHCSRCLIPF-----TA---------   62 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~LP--fpd~SFD~V~cs~~l~hw-----~~---------   62 (378)
                      .|+++++     ++.+++.|+++    ++.  +.+..+|+..++  +++++||+|+|+-.+.+.     ..         
T Consensus        74 ~v~gvDi-----~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~  148 (259)
T 3lpm_A           74 KIVGVEI-----QERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIAR  148 (259)
T ss_dssp             EEEEECC-----SHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC-------------------
T ss_pred             cEEEEEC-----CHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhh
Confidence            4555554     56888888775    443  678888887775  678999999996443222     01         


Q ss_pred             -----ChHHHHHHHhhcccCCcEEEEEcC
Q 017068           63 -----YNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        63 -----~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                           .-..+++++.|+|||||+|++..+
T Consensus       149 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  177 (259)
T 3lpm_A          149 HEVMCTLEDTIRVAASLLKQGGKANFVHR  177 (259)
T ss_dssp             ----HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccccCCHHHHHHHHHHHccCCcEEEEEEc
Confidence                 013689999999999999999765

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.51  E-value=1e-05  Score=72.49  Aligned_cols=97  Identities=10%  Similarity=-0.001  Sum_probs=61.0

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc--cc-ccccccccCCCCCCccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL--IG-VYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig-~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      .+|||+|||+|.++..++.+..  -.|+-.|.+ .++..+-++    |+  +- +..|..+..+..+.+||+|-++..|.
T Consensus        56 ~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~  133 (202)
T 2fpo_A           56 AQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR  133 (202)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred             CeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence            4799999999999987655442  156777766 666655443    33  21 22233332333347899998875543


Q ss_pred             cccCCCCCCCCCCccceeeee--cccccCCCeEEEeCCH
Q 017068          298 LIKNPGSNKNSCSLVDLMVEM--DRMLRPEGTVVVRDSP  334 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~Em--DRiLRPgG~~ii~d~~  334 (378)
                      .          -....++-++  -|+|+|||.+++....
T Consensus       134 ~----------~~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          134 R----------GLLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             T----------TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             C----------CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            1          1224555566  4579999999998654

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.51  E-value=3.6e-05  Score=74.04  Aligned_cols=72  Identities=11%  Similarity=0.011  Sum_probs=53.5

Q ss_pred             CChHHHHHHHHHcCC-----CeEEEEcccCCCC----CC--CCcee-----EEEecCccccccCCh--HHHHHHHhhccc
Q 017068           15 DSHKAQIQFALERGI-----PAFVAMLGTRRLP----FP--AFSFD-----IVHCSRCLIPFTAYN--ATYLIEVDRLLR   76 (378)
Q Consensus        15 D~se~~vq~A~erg~-----~~~~~v~dae~LP----fp--d~SFD-----~V~cs~~l~hw~~~~--~~~L~Ev~RVLk   76 (378)
                      |.|+.|+++|+++-.     .+.+..+|...++    .+  +++||     +|+++.+|||.++..  ..+++++.++|+
T Consensus       112 D~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~  191 (277)
T 3giw_A          112 DNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLP  191 (277)
T ss_dssp             ECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSC
T ss_pred             eCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCC
Confidence            444699999988621     2678888887752    12  46676     577888887777643  479999999999


Q ss_pred             CCcEEEEEcC
Q 017068           77 PGGYLVISGP   86 (378)
Q Consensus        77 PGG~lvis~p   86 (378)
                      |||+|+++..
T Consensus       192 PGG~Lvls~~  201 (277)
T 3giw_A          192 SGSYLAMSIG  201 (277)
T ss_dssp             TTCEEEEEEE
T ss_pred             CCcEEEEEec
Confidence            9999999864

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.50  E-value=0.00015  Score=68.49  Aligned_cols=96  Identities=7%  Similarity=0.139  Sum_probs=64.2

Q ss_pred             eEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068            6 ILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         6 v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      |++++++     +.+++.|+++    ++.  +.+..+|+..++. +++||+|++...     .....++.++.|+|||||
T Consensus       151 V~~vD~s-----~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p-----~~~~~~l~~~~~~LkpgG  219 (278)
T 2frn_A          151 VIAIEKD-----PYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGA  219 (278)
T ss_dssp             EEEECCC-----HHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEE
T ss_pred             EEEEECC-----HHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc-----hhHHHHHHHHHHHCCCCe
Confidence            5666555     6788887764    554  6688899988877 889999998532     222378999999999999


Q ss_pred             EEEEEcCCCCCCccchHHHHHHHHHHHhceeee
Q 017068           80 YLVISGPPVQWPKQDKEWADLQAVARALCYELI  112 (378)
Q Consensus        80 ~lvis~pp~~~~~~~~~w~~l~~l~~~lcw~~~  112 (378)
                      ++++..............+.+...++...|+..
T Consensus       220 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~  252 (278)
T 2frn_A          220 IIHYHNTVPEKLMPREPFETFKRITKEYGYDVE  252 (278)
T ss_dssp             EEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEE
T ss_pred             EEEEEEeeccccccccHHHHHHHHHHHcCCeeE
Confidence            999865411000111224556666776666554

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=97.49  E-value=0.00026  Score=65.92  Aligned_cols=71  Identities=11%  Similarity=0.075  Sum_probs=53.5

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCCCC---CCceeEEEecCccccccCChHHHHHHHhhccc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFP---AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLR   76 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LPfp---d~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLk   76 (378)
                      .|+++++.     +.++++|+++    ++. +.+..++++.+++.   +++||+|+|..+    .+.. .++.++.|+||
T Consensus       106 ~v~~vD~s-----~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~----~~~~-~ll~~~~~~Lk  175 (249)
T 3g89_A          106 ELVLVDAT-----RKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAV----APLC-VLSELLLPFLE  175 (249)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEESS----CCHH-HHHHHHGGGEE
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECCc----CCHH-HHHHHHHHHcC
Confidence            45666555     6888888775    553 77888898888764   589999998542    2334 89999999999


Q ss_pred             CCcEEEEEc
Q 017068           77 PGGYLVISG   85 (378)
Q Consensus        77 PGG~lvis~   85 (378)
                      |||+|++..
T Consensus       176 pgG~l~~~~  184 (249)
T 3g89_A          176 VGGAAVAMK  184 (249)
T ss_dssp             EEEEEEEEE
T ss_pred             CCeEEEEEe
Confidence            999998754

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=97.49  E-value=4.7e-05  Score=83.14  Aligned_cols=100  Identities=11%  Similarity=0.152  Sum_probs=67.5

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----------cc--ccccccccccCCCCCCcccccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----------GL--IGVYHDWCEPFSTYPRTYDLIH  291 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----------Gl--ig~~~~w~~~f~typrtyDliH  291 (378)
                      -..|||+|||.|.++..|....--.-.|+-+|-+ .++..+-+|          |+  +-.++.=-+.++..+.+||+|.
T Consensus       722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV  801 (950)
T 3htx_A          722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGT  801 (950)
T ss_dssp             CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEE
Confidence            3589999999999999998765101155667766 777776552          44  2222211122454458999999


Q ss_pred             ccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      |..++.++.      + -....++-|+-|+|||| ++|+..
T Consensus       802 ~~eVLeHL~------d-p~l~~~L~eI~RvLKPG-~LIIST  834 (950)
T 3htx_A          802 CLEVIEHME------E-DQACEFGEKVLSLFHPK-LLIVST  834 (950)
T ss_dssp             EESCGGGSC------H-HHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred             EeCchhhCC------h-HHHHHHHHHHHHHcCCC-EEEEEe
Confidence            999988764      1 11234788999999999 887764

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=97.48  E-value=1.9e-05  Score=72.65  Aligned_cols=128  Identities=11%  Similarity=0.115  Sum_probs=75.5

Q ss_pred             eeEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHh----hccc---cc-cccccccCCCC------CCc
Q 017068          225 IRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYD----RGLI---GV-YHDWCEPFSTY------PRT  286 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~e----RGli---g~-~~~w~~~f~ty------prt  286 (378)
                      -++|||+|||.|..+..|...   .-   .|+-.|.+ ..+.++-+    .|+-   -+ ..|..+.++..      +.+
T Consensus        71 ~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  147 (237)
T 3c3y_A           71 AKKTIEVGVFTGYSLLLTALSIPDDG---KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS  147 (237)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence            468999999999998877532   23   34444544 44544432    3541   11 22333322322      478


Q ss_pred             cccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH-----------------HHHHHHHH----HHh
Q 017068          287 YDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-----------------EVIDKVSR----IAN  345 (378)
Q Consensus       287 yDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-----------------~~~~~~~~----~~~  345 (378)
                      ||+|.++..-.            ....++-++-|+|||||.+++.+..                 .....+.+    +..
T Consensus       148 fD~I~~d~~~~------------~~~~~l~~~~~~L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~~  215 (237)
T 3c3y_A          148 YDFGFVDADKP------------NYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAA  215 (237)
T ss_dssp             EEEEEECSCGG------------GHHHHHHHHHHHEEEEEEEEEECTTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHH
T ss_pred             cCEEEECCchH------------HHHHHHHHHHHhcCCCeEEEEecCCcCCccCCCcccchhhHHHHHHHHHHHHHHHhc
Confidence            99998763222            2346778888999999999997520                 01223333    344


Q ss_pred             cCCceEEEecCCCCCCCCeEEEEEEecC
Q 017068          346 TVRWTAAVHDKEPGSNGREKILVATKSL  373 (378)
Q Consensus       346 ~l~W~~~~~~~~~~~~~~e~~l~~~K~~  373 (378)
                      .=+......-.      .+++++++|++
T Consensus       216 ~~~~~~~~lp~------~dG~~~~~~~~  237 (237)
T 3c3y_A          216 DPRIEIVHLPL------GDGITFCRRLY  237 (237)
T ss_dssp             CTTEEEEEECS------TTCEEEEEECC
T ss_pred             CCCeEEEEEEe------CCceEEEEEcC
Confidence            55666655543      34688998863

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=97.48  E-value=4.1e-05  Score=73.31  Aligned_cols=143  Identities=11%  Similarity=0.076  Sum_probs=77.9

Q ss_pred             eeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh------cc----cc-ccccccccCCCCCCcccccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR------GL----IG-VYHDWCEPFSTYPRTYDLIH  291 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR------Gl----ig-~~~~w~~~f~typrtyDliH  291 (378)
                      -++|||+|||.|+++..++.. +.  -+|+-+|.. ..+.++-++      ++    +- +..|..+..+..+.+||+|.
T Consensus        91 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           91 PKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            378999999999999999876 33  255666654 555554432      22    11 12222222233357899999


Q ss_pred             ccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-----HHHHHHHHHHHhcCCceEEEec--CCCCCCCCe
Q 017068          292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-----PEVIDKVSRIANTVRWTAAVHD--KEPGSNGRE  364 (378)
Q Consensus       292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-----~~~~~~~~~~~~~l~W~~~~~~--~~~~~~~~e  364 (378)
                      ++. +..+.+   ....-....++-++-|+|+|||.+++...     .+....+.+..++.--.+....  ...-+.+.-
T Consensus       169 ~d~-~~~~~~---~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~  244 (296)
T 1inl_A          169 IDS-TDPTAG---QGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMW  244 (296)
T ss_dssp             EEC--------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEE
T ss_pred             EcC-CCcccC---chhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCce
Confidence            852 222110   00101114677899999999999999732     2333333333333222333322  111123567


Q ss_pred             EEEEEEecC
Q 017068          365 KILVATKSL  373 (378)
Q Consensus       365 ~~l~~~K~~  373 (378)
                      .+++|.|++
T Consensus       245 ~f~~as~~~  253 (296)
T 1inl_A          245 SYTFASKGI  253 (296)
T ss_dssp             EEEEEESSC
T ss_pred             EEEEecCCC
Confidence            788999874

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.47  E-value=4.5e-05  Score=75.66  Aligned_cols=111  Identities=12%  Similarity=0.093  Sum_probs=67.5

Q ss_pred             eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHh----hcccc------ccccccccCCCCCCccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYD----RGLIG------VYHDWCEPFSTYPRTYDLIHV  292 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~e----RGlig------~~~~w~~~f~typrtyDliH~  292 (378)
                      ..|||+|||+|.|+..|...  ..   .|+-.|.+ ..+..+-+    .|+-.      ...|..+.++  +.+||+|.|
T Consensus       224 ~~VLDlGcG~G~~s~~la~~~p~~---~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~--~~~fD~Ii~  298 (375)
T 4dcm_A          224 GEIVDLGCGNGVIGLTLLDKNPQA---KVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--PFRFNAVLC  298 (375)
T ss_dssp             SEEEEETCTTCHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC--TTCEEEEEE
T ss_pred             CeEEEEeCcchHHHHHHHHHCCCC---EEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC--CCCeeEEEE
Confidence            68999999999999998765  34   44556654 55544333    34311      2333333332  369999999


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC--HHHHHHHHHHHh
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS--PEVIDKVSRIAN  345 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~--~~~~~~~~~~~~  345 (378)
                      +-.|.....    -.+-....++-++-|+|+|||.+++...  ..+-..++++..
T Consensus       299 nppfh~~~~----~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg  349 (375)
T 4dcm_A          299 NPPFHQQHA----LTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG  349 (375)
T ss_dssp             CCCC-----------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred             CCCcccCcc----cCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcC
Confidence            877753210    0111123578899999999999999643  335555555544

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=97.47  E-value=7.4e-06  Score=79.45  Aligned_cols=95  Identities=15%  Similarity=0.234  Sum_probs=61.8

Q ss_pred             CeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCCcchHHHHh-hccccccccccccCCCCCCccccccccCcccccc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYD-RGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK  300 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~~~l~~i~e-RGlig~~~~w~~~f~typrtyDliH~~~~~~~~~  300 (378)
                      ....|||+|||+|.++.+|.++  ..   .++-.|.+.++..+-+ .++--+.+|..+++   |. ||+|.+..++..|.
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~---p~-~D~v~~~~~lh~~~  260 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKL---KCIVFDRPQVVENLSGSNNLTYVGGDMFTSI---PN-ADAVLLKYILHNWT  260 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHTTCCCBTTEEEEECCTTTCC---CC-CSEEEEESCGGGSC
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCC---eEEEeeCHHHHhhcccCCCcEEEeccccCCC---CC-ccEEEeehhhccCC
Confidence            4579999999999999999743  22   2222232222222211 12222344554443   44 99999999998875


Q ss_pred             CCCCCCCCCCccceeeeecccccC---CCeEEEeC
Q 017068          301 NPGSNKNSCSLVDLMVEMDRMLRP---EGTVVVRD  332 (378)
Q Consensus       301 ~~~~~~~~c~~~~~l~EmDRiLRP---gG~~ii~d  332 (378)
                      +     ..|  ..+|-++-|+|+|   ||.++|.|
T Consensus       261 d-----~~~--~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          261 D-----KDC--LRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             H-----HHH--HHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             H-----HHH--HHHHHHHHHhCCCCCCCcEEEEEE
Confidence            1     112  3799999999999   99999875

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=97.47  E-value=0.0002  Score=63.03  Aligned_cols=71  Identities=13%  Similarity=0.083  Sum_probs=52.8

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      .|++++++     +.+++.|+++    +++ +.+..+|...++ ++++||+|+|.. +   .+.. .+++++.++|||||
T Consensus        91 ~v~~vD~s-----~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~-~---~~~~-~~l~~~~~~L~~gG  159 (207)
T 1jsx_A           91 HFTLLDSL-----GKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA-F---ASLN-DMVSWCHHLPGEQG  159 (207)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC-S---SSHH-HHHHHHTTSEEEEE
T ss_pred             EEEEEeCC-----HHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEec-c---CCHH-HHHHHHHHhcCCCc
Confidence            45555554     6788877764    443 678888888776 678999999753 2   2333 89999999999999


Q ss_pred             EEEEEcC
Q 017068           80 YLVISGP   86 (378)
Q Consensus        80 ~lvis~p   86 (378)
                      ++++...
T Consensus       160 ~l~~~~~  166 (207)
T 1jsx_A          160 RFYALKG  166 (207)
T ss_dssp             EEEEEES
T ss_pred             EEEEEeC
Confidence            9998754

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.46  E-value=3.3e-05  Score=69.85  Aligned_cols=91  Identities=19%  Similarity=0.176  Sum_probs=56.1

Q ss_pred             eEEEecCCcceeeeeeccCC-Ce----eEEEeccCCCC-cchHHHHhh----c--------cccccccccccCCCCCCcc
Q 017068          226 RNIMDMNAFFGGFAAALTSD-PV----WVMNVVPARKS-STLSVIYDR----G--------LIGVYHDWCEPFSTYPRTY  287 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-~v----wvmnv~p~~~~-~~l~~i~eR----G--------lig~~~~w~~~f~typrty  287 (378)
                      ..|||+|||.|.+++.|... +.    ..-.|+-.|.+ ..+..+-++    |        +--...|..+.++. ..+|
T Consensus        86 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~f  164 (227)
T 1r18_A           86 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-NAPY  164 (227)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-GCSE
T ss_pred             CEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc-CCCc
Confidence            37999999999999988752 10    00023444544 555444333    2        11123344443332 2689


Q ss_pred             ccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          288 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       288 DliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      |+|++...+.               .++-++-|+|+|||.+++.-
T Consensus       165 D~I~~~~~~~---------------~~~~~~~~~LkpgG~lvi~~  194 (227)
T 1r18_A          165 NAIHVGAAAP---------------DTPTELINQLASGGRLIVPV  194 (227)
T ss_dssp             EEEEECSCBS---------------SCCHHHHHTEEEEEEEEEEE
T ss_pred             cEEEECCchH---------------HHHHHHHHHhcCCCEEEEEE
Confidence            9999865543               35568899999999999963

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.46  E-value=0.0001  Score=65.88  Aligned_cols=75  Identities=11%  Similarity=0.042  Sum_probs=54.7

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCC-CCCCCCceeEEEecCccccccCChHHHHHHHhh--ccc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDR--LLR   76 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~R--VLk   76 (378)
                      .|+++++     |+.+++.|+++    ++ .+.+..+|+.. +|+++++||+|++... .|..... .+++++.+  +||
T Consensus        79 ~V~~vD~-----s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p-~~~~~~~-~~l~~l~~~~~L~  151 (202)
T 2fpo_A           79 GATLIEM-----DRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP-FRRGLLE-ETINLLEDNGWLA  151 (202)
T ss_dssp             EEEEECS-----CHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS-SSTTTHH-HHHHHHHHTTCEE
T ss_pred             EEEEEEC-----CHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCC-CCCCcHH-HHHHHHHhcCccC
Confidence            3555554     46888888764    43 56788888766 6788889999998765 3443333 78888855  699


Q ss_pred             CCcEEEEEcC
Q 017068           77 PGGYLVISGP   86 (378)
Q Consensus        77 PGG~lvis~p   86 (378)
                      |||.++++..
T Consensus       152 pgG~l~i~~~  161 (202)
T 2fpo_A          152 DEALIYVESE  161 (202)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCcEEEEEEC
Confidence            9999998765

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.45  E-value=4.8e-06  Score=75.66  Aligned_cols=73  Identities=14%  Similarity=0.167  Sum_probs=56.9

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG   78 (378)
                      .|++++++     +.+++.|+++    ++  .+.+..+|+..++ ++++||+|++...++|..+.. ..+.++.|+||||
T Consensus       102 ~v~~vD~s-----~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~~~~-~~~~~~~~~L~pg  174 (241)
T 3gdh_A          102 RVIAIDID-----PVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWGGPDYAT-AETFDIRTMMSPD  174 (241)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCSSGGGGG-SSSBCTTTSCSSC
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcCCcchhh-hHHHHHHhhcCCc
Confidence            45555555     6788887765    44  5788889988877 778999999998887765555 5788999999999


Q ss_pred             cEEEEE
Q 017068           79 GYLVIS   84 (378)
Q Consensus        79 G~lvis   84 (378)
                      |.+++.
T Consensus       175 G~~i~~  180 (241)
T 3gdh_A          175 GFEIFR  180 (241)
T ss_dssp             HHHHHH
T ss_pred             ceeHHH
Confidence            998765

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.45  E-value=0.00014  Score=65.25  Aligned_cols=71  Identities=14%  Similarity=0.179  Sum_probs=53.9

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----C------CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----G------IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRL   74 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g------~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RV   74 (378)
                      .|+++++.     +.+++.|+++    +      -.+.+..+|+...+.++++||+|++...+.++       +.++.|+
T Consensus       104 ~v~~vD~s-----~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-------~~~~~~~  171 (226)
T 1i1n_A          104 KVIGIDHI-----KELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVV-------PQALIDQ  171 (226)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSSC-------CHHHHHT
T ss_pred             EEEEEeCC-----HHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEEECCchHHH-------HHHHHHh
Confidence            46666555     5777777664    2      14677888887777778899999998876543       4789999


Q ss_pred             ccCCcEEEEEcCC
Q 017068           75 LRPGGYLVISGPP   87 (378)
Q Consensus        75 LkPGG~lvis~pp   87 (378)
                      |||||+++++..+
T Consensus       172 LkpgG~lv~~~~~  184 (226)
T 1i1n_A          172 LKPGGRLILPVGP  184 (226)
T ss_dssp             EEEEEEEEEEESC
T ss_pred             cCCCcEEEEEEec
Confidence            9999999998764

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.45  E-value=0.00017  Score=65.13  Aligned_cols=67  Identities=13%  Similarity=0.077  Sum_probs=51.7

Q ss_pred             CCChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           14 RDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .|.++.+++.|+++    ++  .+.+..+|.....+++++||+|++.     .+++. .+++++.++|||||++++..+
T Consensus       119 vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~-----~~~~~-~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          119 FEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD-----VREPW-HYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEEC-----SSCGG-GGHHHHHHHBCTTCEEEEEES
T ss_pred             EecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEEC-----CcCHH-HHHHHHHHHcCCCCEEEEEeC
Confidence            35567888888875    43  4667778877754478899999973     34444 889999999999999999876

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=97.44  E-value=0.00022  Score=69.40  Aligned_cols=78  Identities=10%  Similarity=0.100  Sum_probs=56.3

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCC--CeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEE
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYL   81 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~l   81 (378)
                      .|+++++++ . .+...+.+++.++  .+.+..+|.+.++++ ++||+|+|...++|+.... ...+.++.|+|||||.+
T Consensus        75 ~V~~vD~s~-~-~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  151 (348)
T 2y1w_A           75 KIYAVEAST-M-AQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNM  151 (348)
T ss_dssp             EEEEEECST-H-HHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEE
T ss_pred             EEEEECCHH-H-HHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEE
Confidence            577777763 1 1222222333354  377888999998887 6799999998888886543 47888999999999999


Q ss_pred             EEEc
Q 017068           82 VISG   85 (378)
Q Consensus        82 vis~   85 (378)
                      +++.
T Consensus       152 i~~~  155 (348)
T 2y1w_A          152 FPTI  155 (348)
T ss_dssp             ESCE
T ss_pred             EEec
Confidence            9654

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=97.44  E-value=3.5e-05  Score=73.95  Aligned_cols=142  Identities=15%  Similarity=0.112  Sum_probs=79.8

Q ss_pred             CeeEEEecCCcceeeeeeccCCC-eeEEEeccCCCC-cchHHHHhhc------c----cc-ccccccccCCC-CCCcccc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDRG------L----IG-VYHDWCEPFST-YPRTYDL  289 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~-~~l~~i~eRG------l----ig-~~~~w~~~f~t-yprtyDl  289 (378)
                      .-++|||+|||.|+++..|+..+ +  -+|+-+|-. ..+.++-++-      +    +- +..|..+-... -+.+||+
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv  172 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTV--EHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV  172 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence            34789999999999999998762 2  245555554 5555544432      1    11 12232221111 2579999


Q ss_pred             ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-----HHHHHHHHHHHhcCCceE-EEecC--CCCCC
Q 017068          290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-----PEVIDKVSRIANTVRWTA-AVHDK--EPGSN  361 (378)
Q Consensus       290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-----~~~~~~~~~~~~~l~W~~-~~~~~--~~~~~  361 (378)
                      |-++......     +....--..++-++-|+|+|||.+++...     ......+.+.+++.-+.. .....  ...+.
T Consensus       173 Ii~d~~~~~~-----~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~  247 (304)
T 3bwc_A          173 VIIDTTDPAG-----PASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPC  247 (304)
T ss_dssp             EEEECC--------------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTT
T ss_pred             EEECCCCccc-----cchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccC
Confidence            9986433211     01111114678899999999999999632     234555656555554543 33222  11123


Q ss_pred             CCeEEEEEEec
Q 017068          362 GREKILVATKS  372 (378)
Q Consensus       362 ~~e~~l~~~K~  372 (378)
                      +.-.+++|.|+
T Consensus       248 g~w~f~~as~~  258 (304)
T 3bwc_A          248 GSIGTLVCSKK  258 (304)
T ss_dssp             SCCEEEEEESS
T ss_pred             cceEEEEEeCC
Confidence            45678888886

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.41  E-value=0.00011  Score=63.01  Aligned_cols=67  Identities=15%  Similarity=0.166  Sum_probs=50.3

Q ss_pred             CChHHHHHHHHHc----CC--CeEEEEcccCCCCCCC-CceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GI--PAFVAMLGTRRLPFPA-FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd-~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.++.+++.|+++    +.  .+.+..+|... ++++ ++||+|++..++.|+    ..+++++.|+|+|||++++..+
T Consensus        62 D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~----~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A           62 DRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGGSGGEL----QEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             ESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESCCTTCH----HHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEECCchHHH----HHHHHHHHHhcCCCcEEEEEec
Confidence            4456888888774    44  46677777655 4444 689999998766442    4899999999999999999875

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=97.41  E-value=0.00018  Score=63.01  Aligned_cols=71  Identities=10%  Similarity=0.071  Sum_probs=51.3

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCC-------------------------CCCCceeEEEecCccc
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP-------------------------FPAFSFDIVHCSRCLI   58 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LP-------------------------fpd~SFD~V~cs~~l~   58 (378)
                      ..|++++++|..           ....+.+..+|...++                         +++++||+|+|..++ 
T Consensus        49 ~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~-  116 (201)
T 2plw_A           49 NKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAV-  116 (201)
T ss_dssp             EEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCC-
T ss_pred             ceEEEEeCCccC-----------CCCCceEEEccccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCc-
Confidence            358888888831           1123567788888877                         788999999997765 


Q ss_pred             ccc-----CCh------HHHHHHHhhcccCCcEEEEEcC
Q 017068           59 PFT-----AYN------ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        59 hw~-----~~~------~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |+.     +..      ..+++++.|+|||||.|++...
T Consensus       117 ~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  155 (201)
T 2plw_A          117 PCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY  155 (201)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence            432     221      1378999999999999998653

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.41  E-value=0.00013  Score=64.72  Aligned_cols=71  Identities=13%  Similarity=0.095  Sum_probs=53.0

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCC-CCceeEEEecCccccccCChHHHHHHHhhcccC
Q 017068            4 ENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFP-AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP   77 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfp-d~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkP   77 (378)
                      ..|+++++.     +.+++.|+++    +. .+.+..+|... +++ +++||+|++..+++|+.       .++.|+|||
T Consensus       103 ~~v~~vD~~-----~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~v~~~~~~~~~~-------~~~~~~L~p  169 (215)
T 2yxe_A          103 GLVVSIERI-----PELAEKAERTLRKLGYDNVIVIVGDGTL-GYEPLAPYDRIYTTAAGPKIP-------EPLIRQLKD  169 (215)
T ss_dssp             SEEEEEESC-----HHHHHHHHHHHHHHTCTTEEEEESCGGG-CCGGGCCEEEEEESSBBSSCC-------HHHHHTEEE
T ss_pred             CEEEEEeCC-----HHHHHHHHHHHHHcCCCCeEEEECCccc-CCCCCCCeeEEEECCchHHHH-------HHHHHHcCC
Confidence            346666554     6888888775    33 36677777643 444 78999999999887764       489999999


Q ss_pred             CcEEEEEcCC
Q 017068           78 GGYLVISGPP   87 (378)
Q Consensus        78 GG~lvis~pp   87 (378)
                      ||+++++.++
T Consensus       170 gG~lv~~~~~  179 (215)
T 2yxe_A          170 GGKLLMPVGR  179 (215)
T ss_dssp             EEEEEEEESS
T ss_pred             CcEEEEEECC
Confidence            9999998763

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=97.41  E-value=0.00062  Score=66.90  Aligned_cols=75  Identities=15%  Similarity=0.054  Sum_probs=54.5

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCC-CCC-CCCceeEEEecCccccccCChHHHHHHHhhcccC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR-LPF-PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP   77 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~-LPf-pd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkP   77 (378)
                      .|+++++.     +.+++.|+++    |+ .+.+..+|+.. +|. .+++||+|+++..+.+. .. ..+++++.|+|||
T Consensus       197 ~v~~vDi~-----~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~-~~-~~~l~~~~~~Lkp  269 (373)
T 2qm3_A          197 RIAVLDID-----ERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPETLE-AI-RAFVGRGIATLKG  269 (373)
T ss_dssp             EEEEECSC-----HHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHH-HH-HHHHHHHHHTBCS
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCchH-HH-HHHHHHHHHHccc
Confidence            45555555     6888888776    55 57788889887 775 56799999997644333 22 4899999999999


Q ss_pred             CcE-EEEEcC
Q 017068           78 GGY-LVISGP   86 (378)
Q Consensus        78 GG~-lvis~p   86 (378)
                      ||+ ++++..
T Consensus       270 gG~~~~~~~~  279 (373)
T 2qm3_A          270 PRCAGYFGIT  279 (373)
T ss_dssp             TTCEEEEEEC
T ss_pred             CCeEEEEEEe
Confidence            994 355543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.40  E-value=4.4e-05  Score=73.52  Aligned_cols=91  Identities=11%  Similarity=0.078  Sum_probs=54.4

Q ss_pred             eEEEecCCcceeeeeeccCC--C-eeEEEeccCCCC-cchHHHHhhcc-----------------cc-ccccccccCCCC
Q 017068          226 RNIMDMNAFFGGFAAALTSD--P-VWVMNVVPARKS-STLSVIYDRGL-----------------IG-VYHDWCEPFSTY  283 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~--~-vwvmnv~p~~~~-~~l~~i~eRGl-----------------ig-~~~~w~~~f~ty  283 (378)
                      .+|||+|||.|.++.+|...  + .   .|+-.|.+ ..+..+-++.-                 +- ...|..+....+
T Consensus       107 ~~VLDiG~G~G~~~~~la~~~g~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~  183 (336)
T 2b25_A          107 DTVLEAGSGSGGMSLFLSKAVGSQG---RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI  183 (336)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHCTTC---EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred             CEEEEeCCCcCHHHHHHHHHhCCCc---eEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence            48999999999999988753  2 3   33444544 55555444311                 11 223444432233


Q ss_pred             C-CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          284 P-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       284 p-rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      + .+||+|.++. ...             ..++-++-|+|+|||.+++...
T Consensus       184 ~~~~fD~V~~~~-~~~-------------~~~l~~~~~~LkpgG~lv~~~~  220 (336)
T 2b25_A          184 KSLTFDAVALDM-LNP-------------HVTLPVFYPHLKHGGVCAVYVV  220 (336)
T ss_dssp             ----EEEEEECS-SST-------------TTTHHHHGGGEEEEEEEEEEES
T ss_pred             CCCCeeEEEECC-CCH-------------HHHHHHHHHhcCCCcEEEEEeC
Confidence            4 5899998842 111             2377889999999999998654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=97.40  E-value=0.00013  Score=69.11  Aligned_cols=143  Identities=14%  Similarity=0.158  Sum_probs=81.1

Q ss_pred             CeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh------cc----cc-ccccccccCCCCCCccccc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR------GL----IG-VYHDWCEPFSTYPRTYDLI  290 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR------Gl----ig-~~~~w~~~f~typrtyDli  290 (378)
                      .-++|||+|||.|+++..++.+ ++  ..|+-+|-. ..+.++-++      ++    +- +..|-.+-++..+.+||+|
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I  152 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCC--ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence            4589999999999999999876 43  244555544 555544332      22    11 1122222122235789999


Q ss_pred             cccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-----HHHHHHHHHHHhcCCceEEEecCCCC--CCCC
Q 017068          291 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-----PEVIDKVSRIANTVRWTAAVHDKEPG--SNGR  363 (378)
Q Consensus       291 H~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-----~~~~~~~~~~~~~l~W~~~~~~~~~~--~~~~  363 (378)
                      -++... .+.    +....-...++-++-|+|+|||.+++...     .+.+..+.+.+++.=-.+......-.  +.+.
T Consensus       153 i~d~~~-~~~----~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~  227 (275)
T 1iy9_A          153 MVDSTE-PVG----PAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGL  227 (275)
T ss_dssp             EESCSS-CCS----CCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGC
T ss_pred             EECCCC-CCC----cchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcc
Confidence            986332 211    11111124678899999999999999732     33445554444444334443322111  1245


Q ss_pred             eEEEEEEecC
Q 017068          364 EKILVATKSL  373 (378)
Q Consensus       364 e~~l~~~K~~  373 (378)
                      -.+++|.|++
T Consensus       228 w~~~~ask~~  237 (275)
T 1iy9_A          228 WTFTIGSKKY  237 (275)
T ss_dssp             EEEEEEESSC
T ss_pred             eEEEEeeCCC
Confidence            6788898864

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.40  E-value=0.00011  Score=68.90  Aligned_cols=96  Identities=13%  Similarity=0.145  Sum_probs=60.3

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCC-----CeeEEEeccCCCCcchHHH----Hhhc-ccccccccccc--CCCCCCcc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVI----YDRG-LIGVYHDWCEP--FSTYPRTY  287 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~-----~vwvmnv~p~~~~~~l~~i----~eRG-lig~~~~w~~~--f~typrty  287 (378)
                      |+.|.  +|||+|||+|.|+..|.+.     .|..+.+.|    .++..+    -+++ +.-+..+-+.+  .+..+.++
T Consensus        75 ikpG~--~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~----~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~v  148 (233)
T 4df3_A           75 VKEGD--RILYLGIASGTTASHMSDIIGPRGRIYGVEFAP----RVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGV  148 (233)
T ss_dssp             CCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEEEECCH----HHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCE
T ss_pred             CCCCC--EEEEecCcCCHHHHHHHHHhCCCceEEEEeCCH----HHHHHHHHhhHhhcCeeEEEEeccCccccccccceE
Confidence            56664  8999999999999999742     243333332    444433    3344 33455555443  22233688


Q ss_pred             ccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          288 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       288 DliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      |+|.++-....           ....++.|+.|+|+|||.++|..
T Consensus       149 DvVf~d~~~~~-----------~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          149 DGLYADVAQPE-----------QAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             EEEEECCCCTT-----------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEeccCCh-----------hHHHHHHHHHHhccCCCEEEEEE
Confidence            98876422211           12468899999999999999863

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=97.39  E-value=4.1e-05  Score=72.60  Aligned_cols=140  Identities=14%  Similarity=0.069  Sum_probs=78.0

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh-----cc-----------ccc-cccccccCCCCCCc
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR-----GL-----------IGV-YHDWCEPFSTYPRT  286 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR-----Gl-----------ig~-~~~w~~~f~typrt  286 (378)
                      -++|||+|||.|+++..++..+.  .+|+-+|.. ..+.++-++     |+           +-+ ..|-.+-++. +.+
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~  152 (281)
T 1mjf_A           76 PKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG  152 (281)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred             CCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence            36899999999999999987743  355666654 555554433     22           111 1121111122 678


Q ss_pred             cccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC-----CHHHHHHHHHHHhcCCceEEEecCCCCC-
Q 017068          287 YDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-----SPEVIDKVSRIANTVRWTAAVHDKEPGS-  360 (378)
Q Consensus       287 yDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-----~~~~~~~~~~~~~~l~W~~~~~~~~~~~-  360 (378)
                      ||+|.++... .+.    +...--...++-++-|+|+|||.+++..     ..+.+..+.+..+..--.+......-.. 
T Consensus       153 fD~Ii~d~~~-~~~----~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~  227 (281)
T 1mjf_A          153 FDVIIADSTD-PVG----PAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGY  227 (281)
T ss_dssp             EEEEEEECCC-CC---------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTS
T ss_pred             eeEEEECCCC-CCC----cchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCC
Confidence            9999986432 111    0010001467889999999999999962     2344444444443332333332211111 


Q ss_pred             CCCeEEEEEEec
Q 017068          361 NGREKILVATKS  372 (378)
Q Consensus       361 ~~~e~~l~~~K~  372 (378)
                      .+.-.+++|.|+
T Consensus       228 ~g~~~~~~as~~  239 (281)
T 1mjf_A          228 ASPWAFLVGVKG  239 (281)
T ss_dssp             SSSEEEEEEEES
T ss_pred             CceEEEEEeeCC
Confidence            245678888886

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.39  E-value=6.2e-06  Score=83.49  Aligned_cols=126  Identities=9%  Similarity=0.116  Sum_probs=74.9

Q ss_pred             HHHHHHHhhhhcCCCCeeEEEecCCc------ceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhhccccccccccc
Q 017068          209 VAYYKNTLNVKLGTPAIRNIMDMNAF------FGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCE  278 (378)
Q Consensus       209 v~~Y~~~~~~~~~~~~iR~vlDm~ag------~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~  278 (378)
                      ...|.+.+.+....  -.+|||+|||      +||.+..|..+   +.   .|+-.|.+ .+.  .....+-=+..|-..
T Consensus       203 ~~~Ye~lL~~l~~~--~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a---~V~GVDiSp~m~--~~~~rI~fv~GDa~d  275 (419)
T 3sso_A          203 TPHYDRHFRDYRNQ--QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRG---QIYGLDIMDKSH--VDELRIRTIQGDQND  275 (419)
T ss_dssp             HHHHHHHHGGGTTS--CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTC---EEEEEESSCCGG--GCBTTEEEEECCTTC
T ss_pred             HHHHHHHHHhhcCC--CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCC---EEEEEECCHHHh--hcCCCcEEEEecccc
Confidence            44566655543332  3789999999      78877666532   22   33444433 331  111111111222222


Q ss_pred             cCCCC------CCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC------------------H
Q 017068          279 PFSTY------PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS------------------P  334 (378)
Q Consensus       279 ~f~ty------prtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~------------------~  334 (378)
                       ++.-      +.+||+|.|+.+.. +         ......|-|+-|+|||||++|+.|-                  .
T Consensus       276 -lpf~~~l~~~d~sFDlVisdgsH~-~---------~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~  344 (419)
T 3sso_A          276 -AEFLDRIARRYGPFDIVIDDGSHI-N---------AHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSG  344 (419)
T ss_dssp             -HHHHHHHHHHHCCEEEEEECSCCC-H---------HHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTT
T ss_pred             -cchhhhhhcccCCccEEEECCccc-c---------hhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchh
Confidence             1111      37899999865321 1         1235689999999999999999752                  2


Q ss_pred             HHHHHHHHHHhcCCceEE
Q 017068          335 EVIDKVSRIANTVRWTAA  352 (378)
Q Consensus       335 ~~~~~~~~~~~~l~W~~~  352 (378)
                      .+++.++++...+.|.-.
T Consensus       345 tii~~lk~l~D~l~~~~~  362 (419)
T 3sso_A          345 TSLGLLKSLIDAIQHQEL  362 (419)
T ss_dssp             SHHHHHHHHHHHHTGGGS
T ss_pred             HHHHHHHHHHHHhccccc
Confidence            468888888888887643

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=97.38  E-value=6.9e-05  Score=64.61  Aligned_cols=75  Identities=15%  Similarity=0.090  Sum_probs=53.5

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCC----CCCCCCceeEEEecCccccccCChHHHHHHH--h
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRR----LPFPAFSFDIVHCSRCLIPFTAYNATYLIEV--D   72 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~----LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev--~   72 (378)
                      .|+++++.     +.+++.|+++    ++  .+.+..+|+..    +++++++||+|++...+ +..... ..+.++  .
T Consensus        69 ~v~~vD~~-----~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~-~~~~~~-~~~~~l~~~  141 (187)
T 2fhp_A           69 KSICIEKN-----FAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPY-AKQEIV-SQLEKMLER  141 (187)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCG-GGCCHH-HHHHHHHHT
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCC-CchhHH-HHHHHHHHh
Confidence            46666655     5788877764    33  36778888655    33457899999998663 333333 777777  9


Q ss_pred             hcccCCcEEEEEcC
Q 017068           73 RLLRPGGYLVISGP   86 (378)
Q Consensus        73 RVLkPGG~lvis~p   86 (378)
                      |+|||||.++++.+
T Consensus       142 ~~L~~gG~l~~~~~  155 (187)
T 2fhp_A          142 QLLTNEAVIVCETD  155 (187)
T ss_dssp             TCEEEEEEEEEEEE
T ss_pred             cccCCCCEEEEEeC
Confidence            99999999999866

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=97.38  E-value=0.00024  Score=61.80  Aligned_cols=85  Identities=12%  Similarity=-0.024  Sum_probs=58.6

Q ss_pred             CChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCC--------hHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY--------NATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~--------~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |+|+.|++.    ...+.+..+|+.. ++++++||+|+|+..+++..+.        ....++++.+.| |||.+++..+
T Consensus        51 D~s~~~~~~----~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~  124 (170)
T 3q87_B           51 DLNIRALES----HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVI  124 (170)
T ss_dssp             ESCHHHHHT----CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEE
T ss_pred             ECCHHHHhc----ccCCeEEECChhh-hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEe
Confidence            445688776    2345678888877 8888999999998877654444        237889999999 9999998764


Q ss_pred             CCCCCccchHHHHHHHHHHHhceee
Q 017068           87 PVQWPKQDKEWADLQAVARALCYEL  111 (378)
Q Consensus        87 p~~~~~~~~~w~~l~~l~~~lcw~~  111 (378)
                      ...      .-..+..+.+...|+.
T Consensus       125 ~~~------~~~~l~~~l~~~gf~~  143 (170)
T 3q87_B          125 EAN------RPKEVLARLEERGYGT  143 (170)
T ss_dssp             GGG------CHHHHHHHHHHTTCEE
T ss_pred             cCC------CHHHHHHHHHHCCCcE
Confidence            211      1234555555555543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.38  E-value=0.00045  Score=68.42  Aligned_cols=77  Identities=13%  Similarity=0.077  Sum_probs=55.3

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHc----CC----CeEEEEcccCCCCCCCCceeEEEecCccccc---cCCh-HHHHHHH
Q 017068            4 ENILTLSFAPRDSHKAQIQFALER----GI----PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF---TAYN-ATYLIEV   71 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~er----g~----~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw---~~~~-~~~L~Ev   71 (378)
                      ..|+++++.     +.+++.|+++    ++    .+.+..+|... ++++++||+|+|+..+++-   .+.. ..+++++
T Consensus       247 ~~V~gvD~s-----~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~  320 (375)
T 4dcm_A          247 AKVVFVDES-----PMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHA  320 (375)
T ss_dssp             CEEEEEESC-----HHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECCCC-------CCHHHHHHHHH
T ss_pred             CEEEEEECc-----HHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHH
Confidence            346666555     6888888774    33    35677888766 7889999999998876542   2222 2679999


Q ss_pred             hhcccCCcEEEEEcC
Q 017068           72 DRLLRPGGYLVISGP   86 (378)
Q Consensus        72 ~RVLkPGG~lvis~p   86 (378)
                      .|+|||||++++..+
T Consensus       321 ~~~LkpgG~l~iv~n  335 (375)
T 4dcm_A          321 RRCLKINGELYIVAN  335 (375)
T ss_dssp             HHHEEEEEEEEEEEE
T ss_pred             HHhCCCCcEEEEEEE
Confidence            999999999999764

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.37  E-value=0.00017  Score=65.14  Aligned_cols=69  Identities=13%  Similarity=0.198  Sum_probs=52.9

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC----------CCeEEEEcccCCCCCCC-CceeEEEecCccccccCChHHHHHHHhh
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG----------IPAFVAMLGTRRLPFPA-FSFDIVHCSRCLIPFTAYNATYLIEVDR   73 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg----------~~~~~~v~dae~LPfpd-~SFD~V~cs~~l~hw~~~~~~~L~Ev~R   73 (378)
                      .|+++++.     +.+++.|+++.          ..+.+..+|... ++++ ++||+|++..++.|..       +++.+
T Consensus       116 ~v~~vD~~-----~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~I~~~~~~~~~~-------~~~~~  182 (227)
T 1r18_A          116 RIVGIEHQ-----AELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNAPYNAIHVGAAAPDTP-------TELIN  182 (227)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGCSEEEEEECSCBSSCC-------HHHHH
T ss_pred             EEEEEEcC-----HHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCCCccEEEECCchHHHH-------HHHHH
Confidence            56666655     57888877651          246778888766 6766 8999999998876643       78999


Q ss_pred             cccCCcEEEEEcC
Q 017068           74 LLRPGGYLVISGP   86 (378)
Q Consensus        74 VLkPGG~lvis~p   86 (378)
                      +|||||+++++..
T Consensus       183 ~LkpgG~lvi~~~  195 (227)
T 1r18_A          183 QLASGGRLIVPVG  195 (227)
T ss_dssp             TEEEEEEEEEEES
T ss_pred             HhcCCCEEEEEEe
Confidence            9999999999865

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=97.37  E-value=8e-05  Score=67.10  Aligned_cols=75  Identities=16%  Similarity=0.198  Sum_probs=53.0

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCC-CCCC-----CCceeEEEecCccccccCChHHHHHHHh
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRR-LPFP-----AFSFDIVHCSRCLIPFTAYNATYLIEVD   72 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~-LPfp-----d~SFD~V~cs~~l~hw~~~~~~~L~Ev~   72 (378)
                      .|+++++.     +.+++.|+++    ++.  +.+..+|+.. +|..     .++||+|++.....++.+.. ..+.++ 
T Consensus        85 ~v~~vD~~-----~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~-~~~~~~-  157 (221)
T 3u81_A           85 RLLTMEIN-----PDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDT-LLLEKC-  157 (221)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHHHHH-HHHHHT-
T ss_pred             EEEEEeCC-----hHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccchHHH-HHHHhc-
Confidence            46666655     5788888774    443  6788888643 4432     27999999987666654433 667777 


Q ss_pred             hcccCCcEEEEEcC
Q 017068           73 RLLRPGGYLVISGP   86 (378)
Q Consensus        73 RVLkPGG~lvis~p   86 (378)
                      |+|||||++++...
T Consensus       158 ~~LkpgG~lv~~~~  171 (221)
T 3u81_A          158 GLLRKGTVLLADNV  171 (221)
T ss_dssp             TCCCTTCEEEESCC
T ss_pred             cccCCCeEEEEeCC
Confidence            99999999998764

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=97.37  E-value=8.1e-05  Score=71.38  Aligned_cols=77  Identities=16%  Similarity=0.118  Sum_probs=53.8

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC---------CCeEEEEcccCCCCC--CCCceeEEEecCccccccCCh---HHHHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRRLPF--PAFSFDIVHCSRCLIPFTAYN---ATYLIE   70 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg---------~~~~~~v~dae~LPf--pd~SFD~V~cs~~l~hw~~~~---~~~L~E   70 (378)
                      .|+++++.     +.+++.|+++.         ..+.+..+|+...+.  ++++||+|++.....+++...   ..++++
T Consensus       121 ~v~~vDid-----~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~  195 (304)
T 3bwc_A          121 HCDLVDID-----GEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKD  195 (304)
T ss_dssp             EEEEEESC-----HHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEEECC---------CCHHHHHH
T ss_pred             EEEEEECC-----HHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEEECCCCccccchhhhHHHHHHH
Confidence            45555555     68899888753         346788888877654  589999999976543333221   388999


Q ss_pred             HhhcccCCcEEEEEcC
Q 017068           71 VDRLLRPGGYLVISGP   86 (378)
Q Consensus        71 v~RVLkPGG~lvis~p   86 (378)
                      +.|+|||||.|++...
T Consensus       196 ~~~~LkpgG~lv~~~~  211 (304)
T 3bwc_A          196 VLRILKPDGICCNQGE  211 (304)
T ss_dssp             HHHHEEEEEEEEEEEC
T ss_pred             HHHhcCCCcEEEEecC
Confidence            9999999999999765

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=97.36  E-value=0.00042  Score=58.99  Aligned_cols=91  Identities=10%  Similarity=0.059  Sum_probs=62.2

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      .|++++++     +.+++.|+++    ++ .+.+..+|... ++++++||+|+|..+     .....+++++.|+  |||
T Consensus        59 ~v~~vD~~-----~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~-----~~~~~~l~~~~~~--~gG  125 (183)
T 2yxd_A           59 FVYAIDYL-----DGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT-----KNIEKIIEILDKK--KIN  125 (183)
T ss_dssp             EEEEEECS-----HHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC-----SCHHHHHHHHHHT--TCC
T ss_pred             eEEEEeCC-----HHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc-----ccHHHHHHHHhhC--CCC
Confidence            45555554     6788888775    43 46778888777 888899999999876     3334899999999  999


Q ss_pred             EEEEEcCCCCCCccchHHHHHHHHHHHhceeeecc
Q 017068           80 YLVISGPPVQWPKQDKEWADLQAVARALCYELIAV  114 (378)
Q Consensus        80 ~lvis~pp~~~~~~~~~w~~l~~l~~~lcw~~~~~  114 (378)
                      .++++.+.      ......+....+...|.....
T Consensus       126 ~l~~~~~~------~~~~~~~~~~l~~~g~~~~~~  154 (183)
T 2yxd_A          126 HIVANTIV------LENAAKIINEFESRGYNVDAV  154 (183)
T ss_dssp             EEEEEESC------HHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEEecc------cccHHHHHHHHHHcCCeEEEE
Confidence            99998751      112233444555555544433

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=97.36  E-value=4.1e-05  Score=76.45  Aligned_cols=111  Identities=16%  Similarity=0.157  Sum_probs=68.5

Q ss_pred             HHHHHHHHHhhh--hcCCCCeeEEEecCCcceeeeeecc---CCCeeEEEeccCCCCcch----HHHHhhcc---ccccc
Q 017068          207 RRVAYYKNTLNV--KLGTPAIRNIMDMNAFFGGFAAALT---SDPVWVMNVVPARKSSTL----SVIYDRGL---IGVYH  274 (378)
Q Consensus       207 ~~v~~Y~~~~~~--~~~~~~iR~vlDm~ag~g~faa~L~---~~~vwvmnv~p~~~~~~l----~~i~eRGl---ig~~~  274 (378)
                      .|...|.+.|..  .+..|+  +|||+|||+|-++-..+   .+.|.     ..+.+..+    +++...|+   |-+++
T Consensus        66 ~Rt~aY~~Ai~~~~~~~~~k--~VLDvG~GtGiLs~~Aa~aGA~~V~-----ave~s~~~~~a~~~~~~n~~~~~i~~i~  138 (376)
T 4hc4_A           66 VRTDAYRLGILRNWAALRGK--TVLDVGAGTGILSIFCAQAGARRVY-----AVEASAIWQQAREVVRFNGLEDRVHVLP  138 (376)
T ss_dssp             HHHHHHHHHHHTTHHHHTTC--EEEEETCTTSHHHHHHHHTTCSEEE-----EEECSTTHHHHHHHHHHTTCTTTEEEEE
T ss_pred             HHHHHHHHHHHhCHHhcCCC--EEEEeCCCccHHHHHHHHhCCCEEE-----EEeChHHHHHHHHHHHHcCCCceEEEEe
Confidence            344568776632  223343  69999999998754333   33343     33333333    45556677   44444


Q ss_pred             cccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          275 DWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       275 ~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      .--+.+. .|..+|+|-+-.+.+.+.      ....+..++-..||.|+|||.+|-+
T Consensus       139 ~~~~~~~-lpe~~DvivsE~~~~~l~------~e~~l~~~l~a~~r~Lkp~G~~iP~  188 (376)
T 4hc4_A          139 GPVETVE-LPEQVDAIVSEWMGYGLL------HESMLSSVLHARTKWLKEGGLLLPA  188 (376)
T ss_dssp             SCTTTCC-CSSCEEEEECCCCBTTBT------TTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred             eeeeeec-CCccccEEEeeccccccc------ccchhhhHHHHHHhhCCCCceECCc
Confidence            4333332 367899999866655443      3345678888999999999998854

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.35  E-value=0.00034  Score=65.17  Aligned_cols=73  Identities=14%  Similarity=0.080  Sum_probs=52.3

Q ss_pred             CCChHHHHHHHHHcCCC---------eEEEEcccCCC-------CCCCCceeEEEecCcccc----------------cc
Q 017068           14 RDSHKAQIQFALERGIP---------AFVAMLGTRRL-------PFPAFSFDIVHCSRCLIP----------------FT   61 (378)
Q Consensus        14 ~D~se~~vq~A~erg~~---------~~~~v~dae~L-------Pfpd~SFD~V~cs~~l~h----------------w~   61 (378)
                      .|+++.+++.|+++-..         +.+..+|...+       ++++++||+|+|+--+..                ..
T Consensus        66 vDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~  145 (260)
T 2ozv_A           66 YERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMT  145 (260)
T ss_dssp             EESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC--------------------
T ss_pred             EECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcC
Confidence            34557899999886322         67788888776       478999999999732211                11


Q ss_pred             -CChHHHHHHHhhcccCCcEEEEEcC
Q 017068           62 -AYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        62 -~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                       .....+++++.++|||||+|++..+
T Consensus       146 ~~~~~~~l~~~~~~LkpgG~l~~~~~  171 (260)
T 2ozv_A          146 EGLFEDWIRTASAIMVSGGQLSLISR  171 (260)
T ss_dssp             -CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence             1224789999999999999998765

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.35  E-value=2.8e-05  Score=69.92  Aligned_cols=90  Identities=12%  Similarity=0.159  Sum_probs=56.4

Q ss_pred             eEEEecCCcceeeeeeccCC-------CeeEEEeccCCCC-cchHHHHhh----cc-------cc-ccccccccCC---C
Q 017068          226 RNIMDMNAFFGGFAAALTSD-------PVWVMNVVPARKS-STLSVIYDR----GL-------IG-VYHDWCEPFS---T  282 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-------~vwvmnv~p~~~~-~~l~~i~eR----Gl-------ig-~~~~w~~~f~---t  282 (378)
                      ..|||+|||+|.+++.|...       ..   +|+-.|.+ ..+..+-++    |+       +- ...|..+.++   .
T Consensus        82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  158 (227)
T 2pbf_A           82 SRAIDVGSGSGYLTVCMAIKMNVLENKNS---YVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK  158 (227)
T ss_dssp             CEEEEESCTTSHHHHHHHHHTTTTTCTTC---EEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred             CEEEEECCCCCHHHHHHHHHhcccCCCCC---EEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence            48999999999999888643       12   33444544 555554443    31       11 2223333210   1


Q ss_pred             CCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          283 YPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       283 yprtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      -+.+||+|++...+.               .++-++-|+|+|||.+++.-.
T Consensus       159 ~~~~fD~I~~~~~~~---------------~~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          159 ELGLFDAIHVGASAS---------------ELPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHCCEEEEEECSBBS---------------SCCHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCcCEEEECCchH---------------HHHHHHHHhcCCCcEEEEEEc
Confidence            136899999865443               356788899999999998743

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.35  E-value=0.00012  Score=70.47  Aligned_cols=72  Identities=13%  Similarity=0.054  Sum_probs=49.4

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcC----------------CCeEEEEcccCCC--CCCCCceeEEEecCccccccCChH
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERG----------------IPAFVAMLGTRRL--PFPAFSFDIVHCSRCLIPFTAYNA   65 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg----------------~~~~~~v~dae~L--Pfpd~SFD~V~cs~~l~hw~~~~~   65 (378)
                      ..|+++++.     +.+++.|+++.                ..+.+..+|+..+  ++++++||+|++..     .++. 
T Consensus       131 ~~v~~vD~~-----~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~-----~~~~-  199 (336)
T 2b25_A          131 GRVISFEVR-----KDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDM-----LNPH-  199 (336)
T ss_dssp             CEEEEEESS-----HHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECS-----SSTT-
T ss_pred             ceEEEEeCC-----HHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccCCCCeeEEEECC-----CCHH-
Confidence            346666554     67888887742                2467888888776  67888999999843     3334 


Q ss_pred             HHHHHHhhcccCCcEEEEEcC
Q 017068           66 TYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        66 ~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .++.++.|+|||||.|++..+
T Consensus       200 ~~l~~~~~~LkpgG~lv~~~~  220 (336)
T 2b25_A          200 VTLPVFYPHLKHGGVCAVYVV  220 (336)
T ss_dssp             TTHHHHGGGEEEEEEEEEEES
T ss_pred             HHHHHHHHhcCCCcEEEEEeC
Confidence            689999999999999998775

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.33  E-value=9.9e-05  Score=68.08  Aligned_cols=74  Identities=9%  Similarity=0.030  Sum_probs=53.9

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCC---CCCCC-ceeEEEecCccccccCChHHHHHHHhh-cccCC
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL---PFPAF-SFDIVHCSRCLIPFTAYNATYLIEVDR-LLRPG   78 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~L---Pfpd~-SFD~V~cs~~l~hw~~~~~~~L~Ev~R-VLkPG   78 (378)
                      ..|++++++|..     ++.|+.....+.+..+|+..+   |+.++ +||+|++...  | .+. ..++.|+.| +||||
T Consensus       110 ~~V~gvD~s~~~-----l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~--~-~~~-~~~l~~~~r~~LkpG  180 (236)
T 2bm8_A          110 CQVIGIDRDLSR-----CQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA--H-ANT-FNIMKWAVDHLLEEG  180 (236)
T ss_dssp             CEEEEEESCCTT-----CCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS--C-SSH-HHHHHHHHHHTCCTT
T ss_pred             CEEEEEeCChHH-----HHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc--h-HhH-HHHHHHHHHhhCCCC
Confidence            468889888754     444443344578888998774   66544 7999997654  4 233 489999998 99999


Q ss_pred             cEEEEEcC
Q 017068           79 GYLVISGP   86 (378)
Q Consensus        79 G~lvis~p   86 (378)
                      |+|++...
T Consensus       181 G~lv~~d~  188 (236)
T 2bm8_A          181 DYFIIEDM  188 (236)
T ss_dssp             CEEEECSC
T ss_pred             CEEEEEeC
Confidence            99999753

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=97.33  E-value=0.00011  Score=71.28  Aligned_cols=138  Identities=17%  Similarity=0.113  Sum_probs=77.1

Q ss_pred             CCCCeeEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----cc--cccc-ccccccCCCCCCcccc
Q 017068          221 GTPAIRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GL--IGVY-HDWCEPFSTYPRTYDL  289 (378)
Q Consensus       221 ~~~~iR~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig~~-~~w~~~f~typrtyDl  289 (378)
                      .+..-..|||+|||+|+|+..+...   +.   .|.-.|.. ..+..+-++    |+  |-+. .|.. .++.....||+
T Consensus       200 ~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~---~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~-~~~~~~~~~D~  275 (354)
T 3tma_A          200 DARPGMRVLDPFTGSGTIALEAASTLGPTS---PVYAGDLDEKRLGLAREAALASGLSWIRFLRADAR-HLPRFFPEVDR  275 (354)
T ss_dssp             TCCTTCCEEESSCTTSHHHHHHHHHHCTTS---CEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGG-GGGGTCCCCSE
T ss_pred             CCCCCCEEEeCCCCcCHHHHHHHHhhCCCc---eEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChh-hCccccCCCCE
Confidence            3334468999999999998766542   23   34555654 566554443    43  2222 2222 23333366899


Q ss_pred             ccccCccccccCCCCCCCCCC----ccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEe-cCCCCCCCCe
Q 017068          290 IHVSGIESLIKNPGSNKNSCS----LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVH-DKEPGSNGRE  364 (378)
Q Consensus       290 iH~~~~~~~~~~~~~~~~~c~----~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~-~~~~~~~~~e  364 (378)
                      |.|+--|..-.     ...-.    ...++-++-|+|+|||.+++......  -++++.+ ..|+.... ....|. -.-
T Consensus       276 Ii~npPyg~r~-----~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~--~~~~~~~-~g~~~~~~~~l~~g~-l~~  346 (354)
T 3tma_A          276 ILANPPHGLRL-----GRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPA--LLKRALP-PGFALRHARVVEQGG-VYP  346 (354)
T ss_dssp             EEECCCSCC---------CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHH--HHHHHCC-TTEEEEEEEECCBTT-BCC
T ss_pred             EEECCCCcCcc-----CCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHH--HHHHHhh-cCcEEEEEEEEEeCC-EEE
Confidence            99975543211     00011    14678899999999999988755432  2445555 77776532 111221 234


Q ss_pred             EEEEEEe
Q 017068          365 KILVATK  371 (378)
Q Consensus       365 ~~l~~~K  371 (378)
                      .+++++|
T Consensus       347 ~i~vl~r  353 (354)
T 3tma_A          347 RVFVLEK  353 (354)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEc
Confidence            5666665

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.32  E-value=0.0002  Score=66.79  Aligned_cols=65  Identities=14%  Similarity=0.176  Sum_probs=51.1

Q ss_pred             CChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.++.+++.|+++    ++  .+.+..+|.... +++++||+|++     +.+++. .++.++.|+|||||.+++..+
T Consensus       144 D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~-----~~~~~~-~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          144 EKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALFL-----DVPDPW-NYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             CCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEE-----CCSCGG-GTHHHHHHHEEEEEEEEEEES
T ss_pred             ECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEE-----CCcCHH-HHHHHHHHHcCCCCEEEEEeC
Confidence            4456888888776    44  466777887766 78889999997     345555 899999999999999999876

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.31  E-value=6.3e-05  Score=63.77  Aligned_cols=70  Identities=20%  Similarity=0.279  Sum_probs=50.0

Q ss_pred             CChHHHHHHHHHc----CCCeEEEEcccCC-CCC-C--CCceeEEEecCccccccCChHHHHHHHh--hcccCCcEEEEE
Q 017068           15 DSHKAQIQFALER----GIPAFVAMLGTRR-LPF-P--AFSFDIVHCSRCLIPFTAYNATYLIEVD--RLLRPGGYLVIS   84 (378)
Q Consensus        15 D~se~~vq~A~er----g~~~~~~v~dae~-LPf-p--d~SFD~V~cs~~l~hw~~~~~~~L~Ev~--RVLkPGG~lvis   84 (378)
                      |.|+.+++.|+++    +..+.+..+|+.. ++. +  +++||+|++...++  .... ..++++.  |+|||||.++++
T Consensus        70 D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~--~~~~-~~~~~~~~~~~L~~gG~~~~~  146 (171)
T 1ws6_A           70 EKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA--MDLA-ALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             CCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT--SCTT-HHHHHHHHHTCEEEEEEEEEE
T ss_pred             eCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc--hhHH-HHHHHHHhhcccCCCcEEEEE
Confidence            4556888888774    3466777777655 332 2  34899999986543  3444 6777777  999999999998


Q ss_pred             cCC
Q 017068           85 GPP   87 (378)
Q Consensus        85 ~pp   87 (378)
                      .++
T Consensus       147 ~~~  149 (171)
T 1ws6_A          147 HPK  149 (171)
T ss_dssp             EET
T ss_pred             eCC
Confidence            763

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=97.30  E-value=2.1e-05  Score=74.28  Aligned_cols=94  Identities=12%  Similarity=0.138  Sum_probs=60.9

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCC-C-cchHHHHhh---------cc-------cc-ccccccccCCCC---
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARK-S-STLSVIYDR---------GL-------IG-VYHDWCEPFSTY---  283 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~-~-~~l~~i~eR---------Gl-------ig-~~~~w~~~f~ty---  283 (378)
                      ..|||+|||+|.++.+|.....  -.|+-+|. + ..+..+-++         |+       +- ...+|.......   
T Consensus        81 ~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  158 (281)
T 3bzb_A           81 KTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC  158 (281)
T ss_dssp             CEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred             CeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence            4899999999999888876542  14566666 4 555554433         22       11 124576542211   


Q ss_pred             --CCccccccccCccccccCCCCCCCCCCccceeeeeccccc---C--CCeEEE
Q 017068          284 --PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLR---P--EGTVVV  330 (378)
Q Consensus       284 --prtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLR---P--gG~~ii  330 (378)
                        +.+||+|-++.++...         -....++-++.|+|+   |  ||.+++
T Consensus       159 ~~~~~fD~Ii~~dvl~~~---------~~~~~ll~~l~~~Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          159 TGLQRFQVVLLADLLSFH---------QAHDALLRSVKMLLALPANDPTAVALV  203 (281)
T ss_dssp             HSCSSBSEEEEESCCSCG---------GGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred             ccCCCCCEEEEeCcccCh---------HHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence              4789999987766532         134678899999999   9  996554

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.30  E-value=6.9e-05  Score=70.58  Aligned_cols=109  Identities=16%  Similarity=0.171  Sum_probs=67.2

Q ss_pred             eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHh----hcc---ccccccccccCCCCCCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYD----RGL---IGVYHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~e----RGl---ig~~~~w~~~f~typrtyDliH~~~~  295 (378)
                      .+|||+|||+|+|+..|...  ..   .|+..|.. ..+..+-+    .|+   .-+..|..+ ++ .+.+||+|.++..
T Consensus       121 ~~VLDlgcG~G~~s~~la~~~~~~---~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~-~~-~~~~~D~Vi~d~p  195 (272)
T 3a27_A          121 EVVVDMFAGIGYFTIPLAKYSKPK---LVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRD-VE-LKDVADRVIMGYV  195 (272)
T ss_dssp             CEEEETTCTTTTTHHHHHHHTCCS---EEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGG-CC-CTTCEEEEEECCC
T ss_pred             CEEEEecCcCCHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHH-cC-ccCCceEEEECCc
Confidence            58999999999999888754  22   34445544 45544333    233   112223332 22 2568999977532


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH------HHHHH-HHHHHhcCCceEE
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP------EVIDK-VSRIANTVRWTAA  352 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~------~~~~~-~~~~~~~l~W~~~  352 (378)
                      .             ....++.++-|+|+|||.++++...      +...+ ++.+.+.+.+++.
T Consensus       196 ~-------------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (272)
T 3a27_A          196 H-------------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLI  246 (272)
T ss_dssp             S-------------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred             c-------------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence            2             3467888999999999999998532      23433 4455555555544

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.29  E-value=7.2e-05  Score=72.10  Aligned_cols=121  Identities=17%  Similarity=0.109  Sum_probs=67.6

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----cc--ccc-cccccccCCCCCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GL--IGV-YHDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig~-~~~w~~~f~typrtyDliH~~~  294 (378)
                      ..|||+|||.|+++..|...   .-   .|+..|.+ ..+..+-++    |+  +-+ ..|.. .++.++.+||+|.++-
T Consensus       120 ~~VLDlg~G~G~~t~~la~~~~~~~---~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~-~~~~~~~~fD~Il~d~  195 (315)
T 1ixk_A          120 EIVADMAAAPGGKTSYLAQLMRNDG---VIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSL-HIGELNVEFDKILLDA  195 (315)
T ss_dssp             CEEEECCSSCSHHHHHHHHHTTTCS---EEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGG-GGGGGCCCEEEEEEEC
T ss_pred             CEEEEeCCCCCHHHHHHHHHhCCCC---EEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChh-hcccccccCCEEEEeC
Confidence            47999999999999888742   22   35666765 666655544    54  212 22322 2333467899999753


Q ss_pred             cccc---c-cCCCCCCCC--CC-------ccceeeeecccccCCCeEEEeC----CHHHHHHHHHHHhcCCce
Q 017068          295 IESL---I-KNPGSNKNS--CS-------LVDLMVEMDRMLRPEGTVVVRD----SPEVIDKVSRIANTVRWT  350 (378)
Q Consensus       295 ~~~~---~-~~~~~~~~~--c~-------~~~~l~EmDRiLRPgG~~ii~d----~~~~~~~~~~~~~~l~W~  350 (378)
                      ..|.   + .+++.....  ..       -..+|-++-|+|||||.++++.    ..+.-..++.+++...++
T Consensus       196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~  268 (315)
T 1ixk_A          196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE  268 (315)
T ss_dssp             CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred             CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCE
Confidence            2211   1 101000000  00       0367888999999999999963    123333445555544443

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.29  E-value=3.1e-05  Score=74.30  Aligned_cols=92  Identities=18%  Similarity=0.063  Sum_probs=59.4

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cccc---ccccccccCCCCCCccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG---VYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig---~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      ..|||+|||.|.++..|....--.-+|+-.|.+ .++..+-++    |+-.   ...|..+..+ .+.+||+|.+...+.
T Consensus        77 ~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~-~~~~fD~Iv~~~~~~  155 (317)
T 1dl5_A           77 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP-EFSPYDVIFVTVGVD  155 (317)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-GGCCEEEEEECSBBS
T ss_pred             CEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc-cCCCeEEEEEcCCHH
Confidence            489999999999998887531100024555554 667666555    5421   2334443222 236899999987665


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      ..               .-++-|+|+|||.+++...
T Consensus       156 ~~---------------~~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          156 EV---------------PETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             CC---------------CHHHHHHEEEEEEEEEEBC
T ss_pred             HH---------------HHHHHHhcCCCcEEEEEEC
Confidence            32               2467899999999999753

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.28  E-value=0.00031  Score=65.54  Aligned_cols=71  Identities=11%  Similarity=0.106  Sum_probs=51.0

Q ss_pred             CChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEecCc-------------cccccC-----------ChH
Q 017068           15 DSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRC-------------LIPFTA-----------YNA   65 (378)
Q Consensus        15 D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~cs~~-------------l~hw~~-----------~~~   65 (378)
                      |+|+.+++.|+++    +++ +.+..+|... ++++++||+|+|+..             +.|.+.           ...
T Consensus       140 D~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~  218 (276)
T 2b3t_A          140 DRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIV  218 (276)
T ss_dssp             CSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHH
T ss_pred             ECCHHHHHHHHHHHHHcCCCceEEEEcchhh-hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHH
Confidence            4557888888775    543 6777788755 456789999999732             222221           113


Q ss_pred             HHHHHHhhcccCCcEEEEEcC
Q 017068           66 TYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        66 ~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .++.++.++|||||++++...
T Consensus       219 ~~l~~~~~~LkpgG~l~~~~~  239 (276)
T 2b3t_A          219 HIIEQSRNALVSGGFLLLEHG  239 (276)
T ss_dssp             HHHHHHGGGEEEEEEEEEECC
T ss_pred             HHHHHHHHhcCCCCEEEEEEC
Confidence            788999999999999999754

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=97.28  E-value=0.00051  Score=66.66  Aligned_cols=78  Identities=17%  Similarity=0.080  Sum_probs=57.1

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccc-cCC------hHHHHHHH
Q 017068            4 ENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF-TAY------NATYLIEV   71 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw-~~~------~~~~L~Ev   71 (378)
                      ..|+++++.     +.+++.|+++    |+ .+.+.++|+..+|++.++||+|+|+--.... .+.      -..+++++
T Consensus       229 ~~v~g~Di~-----~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~  303 (354)
T 3tma_A          229 SPVYAGDLD-----EKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGA  303 (354)
T ss_dssp             SCEEEEESC-----HHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHH
T ss_pred             ceEEEEECC-----HHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHH
Confidence            456666665     5778777765    54 4788999999999988999999995322111 111      13789999


Q ss_pred             hhcccCCcEEEEEcC
Q 017068           72 DRLLRPGGYLVISGP   86 (378)
Q Consensus        72 ~RVLkPGG~lvis~p   86 (378)
                      .|+|||||.+++.++
T Consensus       304 ~~~LkpgG~l~i~t~  318 (354)
T 3tma_A          304 LALLPPGGRVALLTL  318 (354)
T ss_dssp             HHTSCTTCEEEEEES
T ss_pred             HHhcCCCcEEEEEeC
Confidence            999999999999876

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.27  E-value=6.7e-05  Score=73.20  Aligned_cols=143  Identities=11%  Similarity=0.002  Sum_probs=78.9

Q ss_pred             chHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----ccc----c
Q 017068          201 DSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLI----G  271 (378)
Q Consensus       201 d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gli----g  271 (378)
                      |+..-.+.+..+.+.    ..  .=..|||+|||+|+|+.++.....   .|+-+|.+ ..+..+-++    |+-    -
T Consensus       136 dq~~~~~~l~~~~~~----~~--~~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~  206 (332)
T 2igt_A          136 EQIVHWEWLKNAVET----AD--RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIR  206 (332)
T ss_dssp             GGHHHHHHHHHHHHH----SS--SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEE
T ss_pred             HHHHHHHHHHHHHHh----cC--CCCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceE
Confidence            555444445455432    12  224799999999999999887665   66777876 666555443    331    1


Q ss_pred             cc-ccccccCCCC---CCccccccccCc-cccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC------HH-HHHH
Q 017068          272 VY-HDWCEPFSTY---PRTYDLIHVSGI-ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS------PE-VIDK  339 (378)
Q Consensus       272 ~~-~~w~~~f~ty---prtyDliH~~~~-~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~------~~-~~~~  339 (378)
                      ++ .|..+.++..   ..+||+|-++-- |..-.........-.+..++-++-|+|+|||++++...      .+ ..+.
T Consensus       207 ~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~  286 (332)
T 2igt_A          207 WICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHEL  286 (332)
T ss_dssp             EECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHH
T ss_pred             EEECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHH
Confidence            11 2222211111   368999988643 22110000000000134678888999999999877531      22 3444


Q ss_pred             HHHHHhcCCceEE
Q 017068          340 VSRIANTVRWTAA  352 (378)
Q Consensus       340 ~~~~~~~l~W~~~  352 (378)
                      +++.++....++.
T Consensus       287 l~~a~~~~g~~v~  299 (332)
T 2igt_A          287 MRETMRGAGGVVA  299 (332)
T ss_dssp             HHHHTTTSCSEEE
T ss_pred             HHHHHHHcCCeEE
Confidence            5555666666654

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.27  E-value=0.0004  Score=66.89  Aligned_cols=77  Identities=16%  Similarity=0.173  Sum_probs=53.4

Q ss_pred             eEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecC------ccccccC-------C----
Q 017068            6 ILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSR------CLIPFTA-------Y----   63 (378)
Q Consensus         6 v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~------~l~hw~~-------~----   63 (378)
                      |+++++     |+.+++.|+++    |+ .+.+..+|+..++..+++||+|++.-      .+.+-++       .    
T Consensus       146 v~avD~-----s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~  220 (315)
T 1ixk_A          146 IYAFDV-----DENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKF  220 (315)
T ss_dssp             EEEECS-----CHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHH
T ss_pred             EEEEcC-----CHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHH
Confidence            555554     46778777765    55 46778888888876678999999731      1222111       1    


Q ss_pred             ----hHHHHHHHhhcccCCcEEEEEcCC
Q 017068           64 ----NATYLIEVDRLLRPGGYLVISGPP   87 (378)
Q Consensus        64 ----~~~~L~Ev~RVLkPGG~lvis~pp   87 (378)
                          ...+|+++.|+|||||++++++-.
T Consensus       221 ~~~~q~~~L~~~~~~LkpGG~lv~stcs  248 (315)
T 1ixk_A          221 CQGLQMRLLEKGLEVLKPGGILVYSTCS  248 (315)
T ss_dssp             HHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence                137899999999999999998753

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=97.25  E-value=1.7e-05  Score=77.11  Aligned_cols=95  Identities=12%  Similarity=0.188  Sum_probs=61.0

Q ss_pred             CeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCCcchHHHHh-hccccccccccccCCCCCCccccccccCcccccc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYD-RGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK  300 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~~~l~~i~e-RGlig~~~~w~~~f~typrtyDliH~~~~~~~~~  300 (378)
                      ...+|||+|||+|.++.+|.++  .+-   ++-.|.+..+..+-+ .++--+-+|..+++   | .||++.+..++..|.
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~---~-~~D~v~~~~vlh~~~  265 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLK---CTVFDQPQVVGNLTGNENLNFVGGDMFKSI---P-SADAVLLKWVLHDWN  265 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSE---EEEEECHHHHSSCCCCSSEEEEECCTTTCC---C-CCSEEEEESCGGGSC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCe---EEEeccHHHHhhcccCCCcEEEeCccCCCC---C-CceEEEEcccccCCC
Confidence            4579999999999999998743  221   222222222221111 12222344554433   4 499999999998875


Q ss_pred             CCCCCCCCCCccceeeeecccccC---CCeEEEeC
Q 017068          301 NPGSNKNSCSLVDLMVEMDRMLRP---EGTVVVRD  332 (378)
Q Consensus       301 ~~~~~~~~c~~~~~l~EmDRiLRP---gG~~ii~d  332 (378)
                      +     ..|  ..+|-++-|+|+|   ||.++|.|
T Consensus       266 d-----~~~--~~~l~~~~~~L~p~~~gG~l~i~e  293 (358)
T 1zg3_A          266 D-----EQS--LKILKNSKEAISHKGKDGKVIIID  293 (358)
T ss_dssp             H-----HHH--HHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred             H-----HHH--HHHHHHHHHhCCCCCCCcEEEEEE
Confidence            1     112  4799999999999   99999864

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=97.25  E-value=0.00011  Score=71.64  Aligned_cols=140  Identities=12%  Similarity=0.103  Sum_probs=89.2

Q ss_pred             hhcCCCCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCCcchHHHHhh---cc---c-cccccccccCCCCCCcccc
Q 017068          218 VKLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLSVIYDR---GL---I-GVYHDWCEPFSTYPRTYDL  289 (378)
Q Consensus       218 ~~~~~~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~~~l~~i~eR---Gl---i-g~~~~w~~~f~typrtyDl  289 (378)
                      ..+..+..+.|+|+|||.|.++.+|.++ |=.  .++-.|.+..+..+-++   +.   | -+-+|.-+  ++ +..+|+
T Consensus       173 ~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~--~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~--~~-~~~~D~  247 (353)
T 4a6d_A          173 TAFDLSVFPLMCDLGGGAGALAKECMSLYPGC--KITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFK--DP-LPEADL  247 (353)
T ss_dssp             HSSCGGGCSEEEEETCTTSHHHHHHHHHCSSC--EEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTT--SC-CCCCSE
T ss_pred             HhcCcccCCeEEeeCCCCCHHHHHHHHhCCCc--eeEeccCHHHHHHHHHhhhhcccCceeeecCcccc--CC-CCCceE
Confidence            3456778899999999999999999743 221  22333444444433322   11   1 12344322  12 245899


Q ss_pred             ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH--------------------------HHHHHHHHH
Q 017068          290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP--------------------------EVIDKVSRI  343 (378)
Q Consensus       290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~--------------------------~~~~~~~~~  343 (378)
                      +.+.+++..|.     ...|  ..||-++-|.|+|||.++|-|..                          -+.++.+++
T Consensus       248 ~~~~~vlh~~~-----d~~~--~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~l  320 (353)
T 4a6d_A          248 YILARVLHDWA-----DGKC--SHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHML  320 (353)
T ss_dssp             EEEESSGGGSC-----HHHH--HHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHH
T ss_pred             EEeeeecccCC-----HHHH--HHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence            99999999885     1234  57899999999999999987520                          024556777


Q ss_pred             HhcCCceEEE-ecCCCCCCCCeEEEEEEecC
Q 017068          344 ANTVRWTAAV-HDKEPGSNGREKILVATKSL  373 (378)
Q Consensus       344 ~~~l~W~~~~-~~~~~~~~~~e~~l~~~K~~  373 (378)
                      +++--|+... ..+.    ....+++|+|.-
T Consensus       321 l~~AGf~~v~v~~~~----~~~~~i~ArKgt  347 (353)
T 4a6d_A          321 LSSAGFRDFQFKKTG----AIYDAILARKGT  347 (353)
T ss_dssp             HHHHTCEEEEEECCS----SSCEEEEEECCC
T ss_pred             HHHCCCceEEEEEcC----CceEEEEEEecC
Confidence            7777777654 3321    345789999964

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.24  E-value=0.00018  Score=64.58  Aligned_cols=70  Identities=19%  Similarity=0.139  Sum_probs=54.1

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----C------CCeEEEEcccCCCC----CCCCceeEEEecCccccccCChHHHHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----G------IPAFVAMLGTRRLP----FPAFSFDIVHCSRCLIPFTAYNATYLIE   70 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g------~~~~~~v~dae~LP----fpd~SFD~V~cs~~l~hw~~~~~~~L~E   70 (378)
                      .|+++++.     +.+++.|+++    +      ..+.+..+|+...+    +++++||+|++...+.+.       +.+
T Consensus       111 ~v~~vD~~-----~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~-------~~~  178 (227)
T 2pbf_A          111 YVIGLERV-----KDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASEL-------PEI  178 (227)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHHCCEEEEEECSBBSSC-------CHH
T ss_pred             EEEEEeCC-----HHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccCCCcCEEEECCchHHH-------HHH
Confidence            56666655     5788888775    3      24778888887766    677899999998877543       478


Q ss_pred             HhhcccCCcEEEEEcC
Q 017068           71 VDRLLRPGGYLVISGP   86 (378)
Q Consensus        71 v~RVLkPGG~lvis~p   86 (378)
                      +.++|||||+++++.+
T Consensus       179 ~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          179 LVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHHEEEEEEEEEEEE
T ss_pred             HHHhcCCCcEEEEEEc
Confidence            8999999999999875

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=97.24  E-value=0.00018  Score=70.44  Aligned_cols=102  Identities=17%  Similarity=0.216  Sum_probs=63.0

Q ss_pred             CCeeEEEecCCcceeeeeeccCCC-eeEEEeccCCCC-cchHHHHhh------cc----cc-ccccccccCCCC-CCccc
Q 017068          223 PAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDR------GL----IG-VYHDWCEPFSTY-PRTYD  288 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~-~~l~~i~eR------Gl----ig-~~~~w~~~f~ty-prtyD  288 (378)
                      ..-++|||+|||.|+++..|+... .  .+|+-+|.. ..+.++-++      |+    +- +..|..+.++.+ +.+||
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~--~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fD  196 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASI--EQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD  196 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCcc
Confidence            345799999999999999998763 2  245666655 556555433      33    11 233433322333 37899


Q ss_pred             cccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          289 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       289 liH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      +|.++.. ..+.    ....-....++-++-|+|+|||.+++.
T Consensus       197 lIi~d~~-~p~~----~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          197 AVIVDSS-DPIG----PAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             EEEECCC-CTTS----GGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEECCC-CccC----cchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            9998532 1110    001000246788999999999999997

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=97.23  E-value=0.00011  Score=71.39  Aligned_cols=142  Identities=18%  Similarity=0.163  Sum_probs=80.3

Q ss_pred             eeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh------cc----cc-ccccccccCCCCCCcccccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR------GL----IG-VYHDWCEPFSTYPRTYDLIH  291 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR------Gl----ig-~~~~w~~~f~typrtyDliH  291 (378)
                      -++|||+|||.|+++..++.. +.  .+|+-.|.. ..+.++-++      |+    +- +..|..+.++..+.+||+|.
T Consensus       117 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          117 PKNVLVVGGGDGGIIRELCKYKSV--ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             CCEEEEEECTTCHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            478999999999999999876 33  255666655 566655443      11    11 22233322222357899999


Q ss_pred             ccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC-----CHHHHHHHHHHHhcCCceEEEecC--CCCCCCCe
Q 017068          292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-----SPEVIDKVSRIANTVRWTAAVHDK--EPGSNGRE  364 (378)
Q Consensus       292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-----~~~~~~~~~~~~~~l~W~~~~~~~--~~~~~~~e  364 (378)
                      ++. +..+.    +....--..++-++-|+|+|||.+++..     ..+.+.++.+..+..--.+.....  ...+.+.-
T Consensus       195 ~d~-~~p~~----~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w  269 (321)
T 2pt6_A          195 VDS-SDPIG----PAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCI  269 (321)
T ss_dssp             EEC-CCSSS----GGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEE
T ss_pred             ECC-cCCCC----cchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceE
Confidence            863 21111    0010001467788999999999999963     223444554444444344443221  11112334


Q ss_pred             EEEEEEecC
Q 017068          365 KILVATKSL  373 (378)
Q Consensus       365 ~~l~~~K~~  373 (378)
                      .+++|.|++
T Consensus       270 ~f~~as~~~  278 (321)
T 2pt6_A          270 GILCCSKTD  278 (321)
T ss_dssp             EEEEEESST
T ss_pred             EEEEeeCCC
Confidence            578888864

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=97.22  E-value=0.00038  Score=64.95  Aligned_cols=77  Identities=13%  Similarity=0.131  Sum_probs=50.7

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCC---CCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEE
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP---FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYL   81 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LP---fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~l   81 (378)
                      .|+|++++|.... .+++.|+++ .++.+..+|+...+   ...++||+|++....   ++....++..+.|+|||||+|
T Consensus       103 ~V~avD~s~~~l~-~l~~~a~~r-~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~l  177 (232)
T 3id6_C          103 KAYGVEFSPRVVR-ELLLVAQRR-PNIFPLLADARFPQSYKSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDM  177 (232)
T ss_dssp             EEEEEECCHHHHH-HHHHHHHHC-TTEEEEECCTTCGGGTTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEE
T ss_pred             EEEEEECcHHHHH-HHHHHhhhc-CCeEEEEcccccchhhhccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeEE
Confidence            4788887764221 235667665 46777888876542   225789999987543   343323445667799999999


Q ss_pred             EEEcC
Q 017068           82 VISGP   86 (378)
Q Consensus        82 vis~p   86 (378)
                      +++..
T Consensus       178 visik  182 (232)
T 3id6_C          178 LLVIK  182 (232)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            99854

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.22  E-value=0.00025  Score=65.46  Aligned_cols=73  Identities=22%  Similarity=0.204  Sum_probs=52.5

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCC-CCCC--CCceeEEEecCccccccCChHHHHHHHhhcc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRR-LPFP--AFSFDIVHCSRCLIPFTAYNATYLIEVDRLL   75 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~-LPfp--d~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVL   75 (378)
                      .|+++++.     +.+++.|+++    |+.  +.+..+|+.. +|..  .++||+|++...   ..+. ..+++++.|+|
T Consensus        90 ~v~~vD~s-----~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~---~~~~-~~~l~~~~~~L  160 (248)
T 3tfw_A           90 QLLTLEAD-----AHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDAD---KPNN-PHYLRWALRYS  160 (248)
T ss_dssp             EEEEEECC-----HHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECSC---GGGH-HHHHHHHHHTC
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECCc---hHHH-HHHHHHHHHhc
Confidence            46666655     5788888775    543  6788888755 4543  349999998542   2223 38999999999


Q ss_pred             cCCcEEEEEcC
Q 017068           76 RPGGYLVISGP   86 (378)
Q Consensus        76 kPGG~lvis~p   86 (378)
                      ||||++++...
T Consensus       161 kpGG~lv~~~~  171 (248)
T 3tfw_A          161 RPGTLIIGDNV  171 (248)
T ss_dssp             CTTCEEEEECC
T ss_pred             CCCeEEEEeCC
Confidence            99999998754

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=97.22  E-value=6e-05  Score=69.28  Aligned_cols=132  Identities=9%  Similarity=0.044  Sum_probs=91.2

Q ss_pred             CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-cccc-----ccccccCCCCCCccccccccCcc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-IGVY-----HDWCEPFSTYPRTYDLIHVSGIE  296 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig~~-----~~w~~~f~typrtyDliH~~~~~  296 (378)
                      .-.+|||+|||+|.+|.++....==+ .+..+|-. .++.++-++-- .|+-     .|--+.  +.|.+||+|=+..++
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~--~~~~~~DvVLa~k~L  125 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD--VYKGTYDVVFLLKML  125 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH--HTTSEEEEEEEETCH
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc--CCCCCcChhhHhhHH
Confidence            36699999999999999996552112 67888876 78877665532 2222     233222  345789998887777


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-----------HHHHHHHHHHHhcCCceEEEecCCCCCCCCeE
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-----------PEVIDKVSRIANTVRWTAAVHDKEPGSNGREK  365 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-----------~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~  365 (378)
                      ..+.      ++   ...+..+=+.|||||.||-.++           ..+....++.+.+=-|.+.....     +.|-
T Consensus       126 HlL~------~~---~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~-----~nEl  191 (200)
T 3fzg_A          126 PVLK------QQ---DVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVI-----GNEL  191 (200)
T ss_dssp             HHHH------HT---TCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEE-----TTEE
T ss_pred             Hhhh------hh---HHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeee-----CceE
Confidence            6664      11   2466689999999999999873           23677788888888898886654     4566


Q ss_pred             EEEEEec
Q 017068          366 ILVATKS  372 (378)
Q Consensus       366 ~l~~~K~  372 (378)
                      +.+.+|.
T Consensus       192 ~y~~~~~  198 (200)
T 3fzg_A          192 VYITSGF  198 (200)
T ss_dssp             EEEECCC
T ss_pred             EEEEecc
Confidence            7766653

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.22  E-value=0.00012  Score=70.69  Aligned_cols=134  Identities=13%  Similarity=0.139  Sum_probs=71.0

Q ss_pred             eEEEecCC------ccee-eeeeccCCCeeEEEeccCCCCcchHHHHhhcccc-ccccccccCCCCCCccccccccCccc
Q 017068          226 RNIMDMNA------FFGG-FAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIG-VYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~a------g~g~-faa~L~~~~vwvmnv~p~~~~~~l~~i~eRGlig-~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      ..|||+||      |.|+ .+|.+....-   .|+-.|-+..+    + ++.= +..|+.+.  .++.+||+|.++....
T Consensus        65 ~~VLDLGcGsg~~~GpGs~~~a~~~~~~~---~V~gvDis~~v----~-~v~~~i~gD~~~~--~~~~~fD~Vvsn~~~~  134 (290)
T 2xyq_A           65 MRVIHFGAGSDKGVAPGTAVLRQWLPTGT---LLVDSDLNDFV----S-DADSTLIGDCATV--HTANKWDLIISDMYDP  134 (290)
T ss_dssp             CEEEEESCCCTTSBCHHHHHHHHHSCTTC---EEEEEESSCCB----C-SSSEEEESCGGGC--CCSSCEEEEEECCCCC
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHHHcCCCC---EEEEEECCCCC----C-CCEEEEECccccC--CccCcccEEEEcCCcc
Confidence            46999999      4476 2333333222   22333433221    1 2322 44566542  2357899999863211


Q ss_pred             --cccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-HHHHHHHHHHHhcCCc-eEEEecCCCCCCCCeEEEEEEe
Q 017068          298 --LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRW-TAAVHDKEPGSNGREKILVATK  371 (378)
Q Consensus       298 --~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-~~~~~~~~~~~~~l~W-~~~~~~~~~~~~~~e~~l~~~K  371 (378)
                        .....+.....-.+..++-|+-|+|||||.|++... .....++.++++...+ .+.....  ...+.|.+|+++.
T Consensus       135 ~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~as--r~~s~e~~lv~~~  210 (290)
T 2xyq_A          135 RTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVTNV--NASSSEAFLIGAN  210 (290)
T ss_dssp             C---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEEGG--GTTSSCEEEEEEE
T ss_pred             ccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEEEc--CCCchheEEecCC
Confidence              111001111111123678899999999999998542 1223466666666634 4444411  1235788998875

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.21  E-value=0.00019  Score=65.58  Aligned_cols=73  Identities=15%  Similarity=0.116  Sum_probs=51.5

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC---eEEEEcccCCC-C-CCCCceeEEEecCccccccCChHHHHHHHhhcc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP---AFVAMLGTRRL-P-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLL   75 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~---~~~~v~dae~L-P-fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVL   75 (378)
                      .|+++++.     +.+++.|+++    |+.   +.+..+|+..+ + +++++||+|++....    .....+++++.|+|
T Consensus        83 ~v~~vD~~-----~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~~~----~~~~~~l~~~~~~L  153 (221)
T 3dr5_A           83 TLTCIDPE-----SEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSP----MDLKALVDAAWPLL  153 (221)
T ss_dssp             EEEEECSC-----HHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECCCT----TTHHHHHHHHHHHE
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcCcH----HHHHHHHHHHHHHc
Confidence            45666555     5777777764    544   67777776443 3 558999999986432    22237899999999


Q ss_pred             cCCcEEEEEcC
Q 017068           76 RPGGYLVISGP   86 (378)
Q Consensus        76 kPGG~lvis~p   86 (378)
                      ||||++++...
T Consensus       154 kpGG~lv~dn~  164 (221)
T 3dr5_A          154 RRGGALVLADA  164 (221)
T ss_dssp             EEEEEEEETTT
T ss_pred             CCCcEEEEeCC
Confidence            99999998543

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=97.20  E-value=0.00015  Score=70.36  Aligned_cols=64  Identities=13%  Similarity=0.015  Sum_probs=51.6

Q ss_pred             HHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccC---CcEEEEEcC
Q 017068           19 AQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRP---GGYLVISGP   86 (378)
Q Consensus        19 ~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkP---GG~lvis~p   86 (378)
                      .+++.|++. ..+.+..+|... |+|  +||+|+++.+++||.++. ..+|+++.|+|||   ||++++...
T Consensus       227 ~~~~~a~~~-~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~  294 (358)
T 1zg3_A          227 QVVGNLTGN-ENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDI  294 (358)
T ss_dssp             HHHSSCCCC-SSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred             HHHhhcccC-CCcEEEeCccCC-CCC--CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            667666553 236778888877 787  399999999999997753 4899999999999   999999765

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.20  E-value=3.8e-05  Score=69.86  Aligned_cols=90  Identities=18%  Similarity=0.206  Sum_probs=56.4

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc--cc-ccccccccCCCCCCccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL--IG-VYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig-~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      .+|||+|||+|.+++.|....-  .+|+-.|.. ..+..+-++    |+  +- ...|...+++. ...||+|.+...+.
T Consensus        93 ~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~~  169 (235)
T 1jg1_A           93 MNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP-KAPYDVIIVTAGAP  169 (235)
T ss_dssp             CCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-GCCEEEEEECSBBS
T ss_pred             CEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCC-CCCccEEEECCcHH
Confidence            4899999999999998875420  134555544 555555443    33  11 12233333321 12499999876654


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      .+               .-++-|+|+|||.+++.-.
T Consensus       170 ~~---------------~~~~~~~L~pgG~lvi~~~  190 (235)
T 1jg1_A          170 KI---------------PEPLIEQLKIGGKLIIPVG  190 (235)
T ss_dssp             SC---------------CHHHHHTEEEEEEEEEEEC
T ss_pred             HH---------------HHHHHHhcCCCcEEEEEEe
Confidence            33               2378899999999999743

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=97.20  E-value=8e-05  Score=64.16  Aligned_cols=70  Identities=10%  Similarity=0.065  Sum_probs=49.7

Q ss_pred             CChHHHHHHHHHc----CCC--eEEEEcccCC-CCCCCCceeEEEecCccccccCChHHHHHHHh--hcccCCcEEEEEc
Q 017068           15 DSHKAQIQFALER----GIP--AFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVD--RLLRPGGYLVISG   85 (378)
Q Consensus        15 D~se~~vq~A~er----g~~--~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~--RVLkPGG~lvis~   85 (378)
                      |.++.+++.|+++    ++.  +.+..+|+.. ++..+++||+|++...+ +..... ..++++.  |+|||||.++++.
T Consensus        61 D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~-~~~~~~-~~~~~l~~~~~L~~gG~l~~~~  138 (177)
T 2esr_A           61 EKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY-AKETIV-ATIEALAAKNLLSEQVMVVCET  138 (177)
T ss_dssp             CCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS-HHHHHH-HHHHHHHHTTCEEEEEEEEEEE
T ss_pred             ECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCC-CcchHH-HHHHHHHhCCCcCCCcEEEEEE
Confidence            4456888888775    332  6677788766 56556789999997654 222223 6677776  9999999999986


Q ss_pred             C
Q 017068           86 P   86 (378)
Q Consensus        86 p   86 (378)
                      +
T Consensus       139 ~  139 (177)
T 2esr_A          139 D  139 (177)
T ss_dssp             E
T ss_pred             C
Confidence            6

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=97.19  E-value=2.6e-05  Score=71.60  Aligned_cols=104  Identities=9%  Similarity=0.021  Sum_probs=53.8

Q ss_pred             eeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhh----cc---ccccc-c----ccccCCCC-CCccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GL---IGVYH-D----WCEPFSTY-PRTYD  288 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~~~-~----w~~~f~ty-prtyD  288 (378)
                      -..|||+|||+|.++..|..+  +.   .|+-.|.+ .++..+-++    |+   +-+++ |    +.++++.. +.+||
T Consensus        66 ~~~vLDlG~G~G~~~~~la~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (254)
T 2h00_A           66 LRRGIDIGTGASCIYPLLGATLNGW---YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD  142 (254)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred             CCEEEEeCCChhHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCccc
Confidence            347999999999999888654  33   45666655 666555443    44   22222 2    22233321 15899


Q ss_pred             cccccCcccccc-CCCC---C--CCCCCccceeeeecccccCCCeEEEe
Q 017068          289 LIHVSGIESLIK-NPGS---N--KNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       289 liH~~~~~~~~~-~~~~---~--~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      +|.|+-.|.... ....   .  .....-..++-|+-|+|+|||.+.+-
T Consensus       143 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~  191 (254)
T 2h00_A          143 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV  191 (254)
T ss_dssp             EEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred             EEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence            999985543221 0000   0  00011124566888888888876543

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.19  E-value=0.00022  Score=65.34  Aligned_cols=53  Identities=13%  Similarity=0.051  Sum_probs=39.3

Q ss_pred             EEEcccCCCCC------CCCceeEEEecCccccccCC--------hHHHHHHHhhcccCCcEEEEEcC
Q 017068           33 VAMLGTRRLPF------PAFSFDIVHCSRCLIPFTAY--------NATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        33 ~~v~dae~LPf------pd~SFD~V~cs~~l~hw~~~--------~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +..+|... ++      +.++||+|+|+..+++....        ...+++++.|+|||||+++++..
T Consensus       149 ~~~~D~~~-~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  215 (250)
T 1o9g_A          149 IRTADVFD-PRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDR  215 (250)
T ss_dssp             EEECCTTC-GGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred             eeeccccc-ccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCc
Confidence            77788765 33      45589999998665554331        13889999999999999999644

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=97.19  E-value=0.00038  Score=63.42  Aligned_cols=74  Identities=11%  Similarity=0.148  Sum_probs=53.5

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCC-CC-CCCCceeEEEecCccccccCChHHHHHHHhhcc
Q 017068            4 ENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRR-LP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLL   75 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~-LP-fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVL   75 (378)
                      ..|+++++.     +.+++.|+++    ++  .+.+..+|+.. +| +.+++||+|++...   .... ..+++++.|+|
T Consensus        96 ~~v~~vD~~-----~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~---~~~~-~~~l~~~~~~L  166 (232)
T 3ntv_A           96 IHVTTIERN-----ETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAA---KAQS-KKFFEIYTPLL  166 (232)
T ss_dssp             CEEEEEECC-----HHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEETT---SSSH-HHHHHHHGGGE
T ss_pred             CEEEEEECC-----HHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcCc---HHHH-HHHHHHHHHhc
Confidence            356666665     5778877764    44  47788888755 45 55899999997532   2223 38999999999


Q ss_pred             cCCcEEEEEcC
Q 017068           76 RPGGYLVISGP   86 (378)
Q Consensus        76 kPGG~lvis~p   86 (378)
                      ||||++++...
T Consensus       167 kpgG~lv~d~~  177 (232)
T 3ntv_A          167 KHQGLVITDNV  177 (232)
T ss_dssp             EEEEEEEEECT
T ss_pred             CCCeEEEEeeC
Confidence            99999998543

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=97.15  E-value=0.00011  Score=70.70  Aligned_cols=143  Identities=15%  Similarity=0.204  Sum_probs=76.4

Q ss_pred             CCeeEEEecCCcceeeeeeccCCC-eeEEEeccCCCC-cchHHHHhh------cc----ccc-cccccccCCCCCCcccc
Q 017068          223 PAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDR------GL----IGV-YHDWCEPFSTYPRTYDL  289 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~-~~l~~i~eR------Gl----ig~-~~~w~~~f~typrtyDl  289 (378)
                      ..-++|||+|||.|+++..|+... +  -+|+-+|.. ..+.++-++      |+    +-+ ..|-.+-++..+.+||+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~  171 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSV--ESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV  171 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceE
Confidence            345799999999999999998763 2  245555554 555544332      22    111 12222212233578999


Q ss_pred             ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC-----CHHHHHHHHHHHhcCCceEEEec--CCCCCCC
Q 017068          290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-----SPEVIDKVSRIANTVRWTAAVHD--KEPGSNG  362 (378)
Q Consensus       290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-----~~~~~~~~~~~~~~l~W~~~~~~--~~~~~~~  362 (378)
                      |.++... .+.    +...-....++-++-|+|+|||.+++..     ..+....+.+..+.+-=.+....  ....+.+
T Consensus       172 Ii~d~~~-~~~----~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~~g  246 (304)
T 2o07_A          172 IITDSSD-PMG----PAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSG  246 (304)
T ss_dssp             EEEECC----------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGG
T ss_pred             EEECCCC-CCC----cchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCCceeEEEEeccccCc
Confidence            9986322 111    0000111457888999999999999974     12344444444333322332211  1111113


Q ss_pred             CeEEEEEEec
Q 017068          363 REKILVATKS  372 (378)
Q Consensus       363 ~e~~l~~~K~  372 (378)
                      .-.+++|.|.
T Consensus       247 ~~g~~~as~~  256 (304)
T 2o07_A          247 QIGFMLCSKN  256 (304)
T ss_dssp             EEEEEEEESS
T ss_pred             ceEEEEEeCC
Confidence            4568888876

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=97.12  E-value=0.0017  Score=63.26  Aligned_cols=67  Identities=15%  Similarity=0.117  Sum_probs=54.3

Q ss_pred             HHHHHHHHHcC-----CCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           18 KAQIQFALERG-----IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        18 e~~vq~A~erg-----~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +.+++.|+++-     -.+.+..+|....|+++  +|+|++.+++|+|+++. .++|+++.++|+|||++++...
T Consensus       212 p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~--~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~  284 (353)
T 4a6d_A          212 PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPE--ADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIES  284 (353)
T ss_dssp             HHHHHHHHHHSCC--CCSEEEEESCTTTSCCCC--CSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             HHHHHHHHHhhhhcccCceeeecCccccCCCCC--ceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence            46788887752     23677888877667664  69999999999999875 5789999999999999999765

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=97.11  E-value=5.6e-05  Score=66.21  Aligned_cols=76  Identities=9%  Similarity=-0.002  Sum_probs=41.6

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCCeEEEEcccCCCCCCC-----CceeEEEecCcccccc------CCh-----
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPA-----FSFDIVHCSRCLIPFT------AYN-----   64 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd-----~SFD~V~cs~~l~hw~------~~~-----   64 (378)
                      .|+++++.|     .+++.|+++    +..+.+..+|+.. ++++     ++||+|+|+..+++..      ...     
T Consensus        56 ~v~~vD~~~-----~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~  129 (215)
T 4dzr_A           56 SVTAVDLSM-----DALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEP  129 (215)
T ss_dssp             EEEEEECC------------------------CCHHHHHH-HHHHHHHTTCCBSEEEECCCCCC----------------
T ss_pred             eEEEEECCH-----HHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCc
Confidence            466666665     666666665    2245566677766 7776     9999999964433221      110     


Q ss_pred             --------------HHHHHHHhhcccCCcE-EEEEcC
Q 017068           65 --------------ATYLIEVDRLLRPGGY-LVISGP   86 (378)
Q Consensus        65 --------------~~~L~Ev~RVLkPGG~-lvis~p   86 (378)
                                    ..+++++.|+|||||+ +++..+
T Consensus       130 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  166 (215)
T 4dzr_A          130 RLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG  166 (215)
T ss_dssp             --------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred             cccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence                          3788999999999999 555543

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.10  E-value=0.00037  Score=63.28  Aligned_cols=70  Identities=19%  Similarity=0.288  Sum_probs=52.6

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCc-eeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFS-FDIVHCSRCLIPFTAYNATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~S-FD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG   78 (378)
                      .|+++++.     +.+++.|+++    ++ .+.+..+|. ..++++++ ||+|++..++.++.       .++.++||||
T Consensus       116 ~v~~vD~~-----~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~~~~~~~-------~~~~~~L~pg  182 (235)
T 1jg1_A          116 DVYTIERI-----PELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVTAGAPKIP-------EPLIEQLKIG  182 (235)
T ss_dssp             CEEEEESC-----HHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEECSBBSSCC-------HHHHHTEEEE
T ss_pred             EEEEEeCC-----HHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEECCcHHHHH-------HHHHHhcCCC
Confidence            46666555     5788888775    33 366777776 56777665 99999998876654       4789999999


Q ss_pred             cEEEEEcCC
Q 017068           79 GYLVISGPP   87 (378)
Q Consensus        79 G~lvis~pp   87 (378)
                      |+++++.++
T Consensus       183 G~lvi~~~~  191 (235)
T 1jg1_A          183 GKLIIPVGS  191 (235)
T ss_dssp             EEEEEEECS
T ss_pred             cEEEEEEec
Confidence            999998763

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.08  E-value=0.00095  Score=59.89  Aligned_cols=73  Identities=11%  Similarity=0.110  Sum_probs=49.0

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc---CCCeEEEEcccCCCC---CCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER---GIPAFVAMLGTRRLP---FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er---g~~~~~~v~dae~LP---fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG   78 (378)
                      .|++++++     +.+++.|+++   ...+.+..+|+....   ..+++||+|++...   .++....++.++.|+||||
T Consensus       100 ~v~~vD~s-----~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~---~~~~~~~~l~~~~~~Lkpg  171 (227)
T 1g8a_A          100 KIFGIEFS-----PRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA---QPTQAKILIDNAEVYLKRG  171 (227)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC---STTHHHHHHHHHHHHEEEE
T ss_pred             EEEEEECC-----HHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCC---CHhHHHHHHHHHHHhcCCC
Confidence            46666554     6677666553   235677888876631   22468999997643   2233324499999999999


Q ss_pred             cEEEEEc
Q 017068           79 GYLVISG   85 (378)
Q Consensus        79 G~lvis~   85 (378)
                      |+++++.
T Consensus       172 G~l~~~~  178 (227)
T 1g8a_A          172 GYGMIAV  178 (227)
T ss_dssp             EEEEEEE
T ss_pred             CEEEEEE
Confidence            9999874

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=97.08  E-value=0.00019  Score=69.66  Aligned_cols=142  Identities=11%  Similarity=0.134  Sum_probs=74.8

Q ss_pred             CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh------cc----cc-ccccccccCCCCCCcccccc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR------GL----IG-VYHDWCEPFSTYPRTYDLIH  291 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR------Gl----ig-~~~~w~~~f~typrtyDliH  291 (378)
                      .-++|||+|||.|+++..|+...- ..+|+-+|.. ..+.++-++      |+    +- ...|..+.++..+.+||+|.
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            347899999999999999987631 1255666655 555555443      22    11 12222221222357899999


Q ss_pred             ccCccccccCCCCCCCCCCc-cceeeeecccccCCCeEEEeCC-----HHHHHHHHHHHhcCCceEEEecC--CCCCCCC
Q 017068          292 VSGIESLIKNPGSNKNSCSL-VDLMVEMDRMLRPEGTVVVRDS-----PEVIDKVSRIANTVRWTAAVHDK--EPGSNGR  363 (378)
Q Consensus       292 ~~~~~~~~~~~~~~~~~c~~-~~~l~EmDRiLRPgG~~ii~d~-----~~~~~~~~~~~~~l~W~~~~~~~--~~~~~~~  363 (378)
                      ++.. ..+.    +.. -.. ..++-++-|+|+|||.+++...     .+....+.+..+.+-=.+.....  ...+.+.
T Consensus       187 ~d~~-~~~~----~~~-~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~iP~~~~g~  260 (314)
T 2b2c_A          187 TDSS-DPVG----PAE-SLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGS  260 (314)
T ss_dssp             ECCC-------------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGE
T ss_pred             EcCC-CCCC----cch-hhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCcceEEEEEecCcCCCc
Confidence            8542 2221    111 111 4678899999999999999742     23334444433333223332211  1111122


Q ss_pred             eEEEEEEec
Q 017068          364 EKILVATKS  372 (378)
Q Consensus       364 e~~l~~~K~  372 (378)
                      -.+++|.|.
T Consensus       261 ~g~~~ask~  269 (314)
T 2b2c_A          261 MGYLICAKN  269 (314)
T ss_dssp             EEEEEEESS
T ss_pred             eEEEEEeCC
Confidence            268888876

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=97.06  E-value=0.00037  Score=61.94  Aligned_cols=72  Identities=13%  Similarity=0.088  Sum_probs=51.4

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCC-CCCCCCceeEEEecCccccccCChHHHHHHHhhcccC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP   77 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkP   77 (378)
                      .|+++++.     +.+++.|+++    +.  .+.+..+|+.. +|..++ ||+|++...   ..+. ..+++++.|+|||
T Consensus        83 ~v~~vD~~-----~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~---~~~~-~~~l~~~~~~Lkp  152 (210)
T 3c3p_A           83 RVVMIDPD-----RDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD---VFNG-ADVLERMNRCLAK  152 (210)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT---TSCH-HHHHHHHGGGEEE
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC---hhhh-HHHHHHHHHhcCC
Confidence            46666654     6788888764    33  36777888754 466567 999998632   2233 4899999999999


Q ss_pred             CcEEEEEcC
Q 017068           78 GGYLVISGP   86 (378)
Q Consensus        78 GG~lvis~p   86 (378)
                      ||++++...
T Consensus       153 gG~lv~~~~  161 (210)
T 3c3p_A          153 NALLIAVNA  161 (210)
T ss_dssp             EEEEEEESS
T ss_pred             CeEEEEECc
Confidence            999998653

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.05  E-value=0.0015  Score=66.05  Aligned_cols=79  Identities=20%  Similarity=0.213  Sum_probs=54.7

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCC--CCCCceeEEEe-----cCcc-ccccCC--------
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP--FPAFSFDIVHC-----SRCL-IPFTAY--------   63 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LP--fpd~SFD~V~c-----s~~l-~hw~~~--------   63 (378)
                      .|+++++     |+.+++.++++    |+ .+.+..+|+..++  |++++||+|++     .... .+-++.        
T Consensus       286 ~v~a~D~-----s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~  360 (450)
T 2yxl_A          286 KIYAFDV-----DKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDK  360 (450)
T ss_dssp             EEEEECS-----CHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTS
T ss_pred             EEEEEcC-----CHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHH
Confidence            3555544     46777777765    66 4677888888877  77789999995     2222 211111        


Q ss_pred             -------hHHHHHHHhhcccCCcEEEEEcCCC
Q 017068           64 -------NATYLIEVDRLLRPGGYLVISGPPV   88 (378)
Q Consensus        64 -------~~~~L~Ev~RVLkPGG~lvis~pp~   88 (378)
                             ...+|.++.++|||||++++++...
T Consensus       361 ~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          361 INEMSQLQRELLESAARLVKPGGRLLYTTCSI  392 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence                   1368999999999999999987633

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=97.05  E-value=0.0012  Score=62.22  Aligned_cols=129  Identities=12%  Similarity=0.054  Sum_probs=72.7

Q ss_pred             CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh------cc----cccc-ccccccCCCCCCcccccc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR------GL----IGVY-HDWCEPFSTYPRTYDLIH  291 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR------Gl----ig~~-~~w~~~f~typrtyDliH  291 (378)
                      .-++|||+|||.|+++..++..+   -.|+-.|.. ..+.++-++      ++    +-+. .|-. .|   +.+||+|-
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~-~~---~~~fD~Ii  144 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLD-LD---IKKYDLIF  144 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGG-SC---CCCEEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHH-HH---HhhCCEEE
Confidence            44799999999999998888764   355666654 444443322      11    1111 1211 12   27899998


Q ss_pred             ccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-----HHHHHHHHHHHhcCCceEEEecCCCCCCCCeEE
Q 017068          292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-----PEVIDKVSRIANTVRWTAAVHDKEPGSNGREKI  366 (378)
Q Consensus       292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-----~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~  366 (378)
                      ++.     .   .  .    ...+-++-|+|+|||.+++...     .+.+..+.+..++.--.+.....--...+.-.+
T Consensus       145 ~d~-----~---d--p----~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~~~vP~~g~~~~  210 (262)
T 2cmg_A          145 CLQ-----E---P--D----IHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFVAPLRILSNKGY  210 (262)
T ss_dssp             ESS-----C---C--C----HHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEEECCTTCTTCCEEE
T ss_pred             ECC-----C---C--h----HHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEEEEEccCCCcccEE
Confidence            861     1   0  1    1267789999999999999631     233444444344432233332221111234557


Q ss_pred             EEEEecC
Q 017068          367 LVATKSL  373 (378)
Q Consensus       367 l~~~K~~  373 (378)
                      ++|.|++
T Consensus       211 ~~as~~~  217 (262)
T 2cmg_A          211 IYASFKT  217 (262)
T ss_dssp             EEEESSC
T ss_pred             EEeeCCC
Confidence            7888863

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=97.04  E-value=0.00012  Score=70.71  Aligned_cols=146  Identities=14%  Similarity=0.129  Sum_probs=78.0

Q ss_pred             CeeEEEecCCcceeeeeeccCCC-eeEEEeccCCCC-cchHHHHhh------c-c----cc-ccccccccCCCCCCcccc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDR------G-L----IG-VYHDWCEPFSTYPRTYDL  289 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~-~~l~~i~eR------G-l----ig-~~~~w~~~f~typrtyDl  289 (378)
                      .-++|||+|||.|+++..|+... .  -+|+-+|.. ..+.++-++      | +    +- +..|-.+-++..+.+||+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~  154 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTV--EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTC--CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccE
Confidence            34799999999999999998762 2  245555544 555544332      1 1    11 112222212223578999


Q ss_pred             ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC------CHHHHHHHHHHHhcCCceEEEecCC-CCCCC
Q 017068          290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD------SPEVIDKVSRIANTVRWTAAVHDKE-PGSNG  362 (378)
Q Consensus       290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d------~~~~~~~~~~~~~~l~W~~~~~~~~-~~~~~  362 (378)
                      |.++... .+. .+.+...--...++-++-|+|+|||.+++..      ..+....+.+..+..--.+...... +...+
T Consensus       155 Ii~d~~~-~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~~g  232 (314)
T 1uir_A          155 VIIDLTD-PVG-EDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFL  232 (314)
T ss_dssp             EEEECCC-CBS-TTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTE
T ss_pred             EEECCCC-ccc-ccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecCCCCC
Confidence            9996432 220 0000000002467889999999999999862      1234455555444443333322110 00013


Q ss_pred             CeEEEEEEecC
Q 017068          363 REKILVATKSL  373 (378)
Q Consensus       363 ~e~~l~~~K~~  373 (378)
                      .-.+++|.|++
T Consensus       233 ~~~~~~as~~~  243 (314)
T 1uir_A          233 NFGFLLASDAF  243 (314)
T ss_dssp             EEEEEEEESSS
T ss_pred             eEEEEEEECCC
Confidence            45678888863

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=97.03  E-value=0.0003  Score=66.76  Aligned_cols=142  Identities=17%  Similarity=0.142  Sum_probs=76.4

Q ss_pred             CeeEEEecCCcceeeeeeccCCC-eeEEEeccCCCC-cchHHHHhhc------c----cc-ccccccccCCCCCCccccc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDRG------L----IG-VYHDWCEPFSTYPRTYDLI  290 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~-~~l~~i~eRG------l----ig-~~~~w~~~f~typrtyDli  290 (378)
                      .-++|||+|||.|+++..++..+ +  .+|+-+|.. ..+.++-++-      +    +- +..|-.+..+..+.+||+|
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSV--ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI  155 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence            44799999999999999998763 2  245555554 5555444331      1    01 1122222112226789999


Q ss_pred             cccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-----HHHHHHHHHHHhcCCceEEEecCCCCC--CCC
Q 017068          291 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-----PEVIDKVSRIANTVRWTAAVHDKEPGS--NGR  363 (378)
Q Consensus       291 H~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-----~~~~~~~~~~~~~l~W~~~~~~~~~~~--~~~  363 (378)
                      -++.. ..+.    +...---..++-++-|+|+|||.+++...     .+.+..+.+.+++.--.+......-.+  .+.
T Consensus       156 i~d~~-~~~~----~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~y~~g~  230 (283)
T 2i7c_A          156 IVDSS-DPIG----PAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGC  230 (283)
T ss_dssp             EEECC-CTTT----GGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGE
T ss_pred             EEcCC-CCCC----cchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCceEEEEEEcCCcCCCc
Confidence            98632 2111    00000004677899999999999999842     233444444344432233322111111  122


Q ss_pred             eEEEEEEec
Q 017068          364 EKILVATKS  372 (378)
Q Consensus       364 e~~l~~~K~  372 (378)
                      -.+.+|.|+
T Consensus       231 ~g~~~~s~~  239 (283)
T 2i7c_A          231 IGILCCSKT  239 (283)
T ss_dssp             EEEEEEESS
T ss_pred             EEEEEEeCC
Confidence            357777775

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.03  E-value=0.0013  Score=63.31  Aligned_cols=68  Identities=10%  Similarity=0.018  Sum_probs=49.8

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcCCCeEE-EEcccCCCCCCCCceeEEEecCcccccc-----CC------hHHHHHHH
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERGIPAFV-AMLGTRRLPFPAFSFDIVHCSRCLIPFT-----AY------NATYLIEV   71 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg~~~~~-~v~dae~LPfpd~SFD~V~cs~~l~hw~-----~~------~~~~L~Ev   71 (378)
                      ..|+++|+.|.      +     .  .+.+ ..+|+..++++ ++||+|+|... .++.     +.      -..+++++
T Consensus        93 ~~V~gvDis~~------v-----~--~v~~~i~gD~~~~~~~-~~fD~Vvsn~~-~~~~g~~~~d~~~~~~l~~~~l~~a  157 (290)
T 2xyq_A           93 TLLVDSDLNDF------V-----S--DADSTLIGDCATVHTA-NKWDLIISDMY-DPRTKHVTKENDSKEGFFTYLCGFI  157 (290)
T ss_dssp             CEEEEEESSCC------B-----C--SSSEEEESCGGGCCCS-SCEEEEEECCC-CCC---CCSCCCCCCTHHHHHHHHH
T ss_pred             CEEEEEECCCC------C-----C--CCEEEEECccccCCcc-CcccEEEEcCC-ccccccccccccchHHHHHHHHHHH
Confidence            45889999986      1     1  3456 78899888876 78999998643 2221     11      12789999


Q ss_pred             hhcccCCcEEEEEcC
Q 017068           72 DRLLRPGGYLVISGP   86 (378)
Q Consensus        72 ~RVLkPGG~lvis~p   86 (378)
                      .|+|||||.|++...
T Consensus       158 ~r~LkpGG~~v~~~~  172 (290)
T 2xyq_A          158 KQKLALGGSIAVKIT  172 (290)
T ss_dssp             HHHEEEEEEEEEEEC
T ss_pred             HHhcCCCcEEEEEEe
Confidence            999999999999764

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.01  E-value=0.00044  Score=62.49  Aligned_cols=73  Identities=15%  Similarity=0.240  Sum_probs=53.0

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCC-CCC--CCceeEEEecCccccccCChHHHHHHHhhcc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRL-PFP--AFSFDIVHCSRCLIPFTAYNATYLIEVDRLL   75 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~L-Pfp--d~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVL   75 (378)
                      .|+++++     ++.+++.|+++    |.  .+.+..+|+... |..  +++||+|++....   .+. ..+++++.++|
T Consensus        80 ~v~~vD~-----~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~---~~~-~~~l~~~~~~L  150 (233)
T 2gpy_A           80 TIVSIER-----DERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDAAK---GQY-RRFFDMYSPMV  150 (233)
T ss_dssp             EEEEECC-----CHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEGGG---SCH-HHHHHHHGGGE
T ss_pred             EEEEEEC-----CHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECCCH---HHH-HHHHHHHHHHc
Confidence            4555544     46888888876    54  367777887653 544  6899999986543   233 48999999999


Q ss_pred             cCCcEEEEEcC
Q 017068           76 RPGGYLVISGP   86 (378)
Q Consensus        76 kPGG~lvis~p   86 (378)
                      ||||++++...
T Consensus       151 ~pgG~lv~~~~  161 (233)
T 2gpy_A          151 RPGGLILSDNV  161 (233)
T ss_dssp             EEEEEEEEETT
T ss_pred             CCCeEEEEEcC
Confidence            99999999753

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.01  E-value=0.00043  Score=70.34  Aligned_cols=80  Identities=10%  Similarity=-0.043  Sum_probs=51.8

Q ss_pred             CeEEEecCCCCCh--HHHHHHHHHc----C---CCeEEEEcccCCC--CC--CCCceeEEEecCccccccCChHHHHHHH
Q 017068            5 NILTLSFAPRDSH--KAQIQFALER----G---IPAFVAMLGTRRL--PF--PAFSFDIVHCSRCLIPFTAYNATYLIEV   71 (378)
Q Consensus         5 ~v~~ms~ap~D~s--e~~vq~A~er----g---~~~~~~v~dae~L--Pf--pd~SFD~V~cs~~l~hw~~~~~~~L~Ev   71 (378)
                      .|+++++.+.-..  +.|++.|+++    |   -.+.+..+|....  +|  +.++||+|+++.++ +.++.. .+|+|+
T Consensus       268 ~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~-~~L~el  345 (433)
T 1u2z_A          268 LSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL-FDEDLN-KKVEKI  345 (433)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHH-HHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccccCCCCEEEEeCcc-ccccHH-HHHHHH
Confidence            4777777753222  2244333554    5   2456666654432  23  35899999987665 334444 789999


Q ss_pred             hhcccCCcEEEEEcC
Q 017068           72 DRLLRPGGYLVISGP   86 (378)
Q Consensus        72 ~RVLkPGG~lvis~p   86 (378)
                      .|+|||||.+++..+
T Consensus       346 ~r~LKpGG~lVi~d~  360 (433)
T 1u2z_A          346 LQTAKVGCKIISLKS  360 (433)
T ss_dssp             HTTCCTTCEEEESSC
T ss_pred             HHhCCCCeEEEEeec
Confidence            999999999999754

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=96.98  E-value=8.2e-05  Score=74.46  Aligned_cols=123  Identities=17%  Similarity=0.209  Sum_probs=69.1

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----ccccc--cccccccCCCCCCccccccccCc-cc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGV--YHDWCEPFSTYPRTYDLIHVSGI-ES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~--~~~w~~~f~typrtyDliH~~~~-~~  297 (378)
                      ..|||+|||+|+|+.++.....   .|+..|.+ ..+..+-++    |+-.-  ..|..+.++.++..||+|.++-- |.
T Consensus       216 ~~VLDlg~GtG~~sl~~a~~ga---~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~  292 (393)
T 4dmg_A          216 ERVLDVYSYVGGFALRAARKGA---YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLV  292 (393)
T ss_dssp             CEEEEESCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCC
T ss_pred             CeEEEcccchhHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCC
Confidence            4799999999999999887654   35666655 566554433    44211  22322222333445999998632 22


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEeCC------HHHHHHHHHHHhcCCceEE
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS------PEVIDKVSRIANTVRWTAA  352 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~------~~~~~~~~~~~~~l~W~~~  352 (378)
                      .-.. ...........++-++-|+|+|||++++...      ....+.+++.+....-+..
T Consensus       293 ~~~~-~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~  352 (393)
T 4dmg_A          293 KRPE-ELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLR  352 (393)
T ss_dssp             SSGG-GHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEE
T ss_pred             CCHH-HHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEE
Confidence            1000 0000001123677888899999999996532      2344555565554444443

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=96.96  E-value=0.00054  Score=70.19  Aligned_cols=73  Identities=14%  Similarity=0.136  Sum_probs=54.6

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRP   77 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkP   77 (378)
                      .|+++++     |+ |++.|+++    |+  .+.+..+|.+.++++ ++||+|+|...++|+.... ...+.++.|+|||
T Consensus       183 ~V~gvD~-----s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp  255 (480)
T 3b3j_A          183 KIYAVEA-----ST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKP  255 (480)
T ss_dssp             EEEEEEC-----HH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEE
T ss_pred             EEEEEEc-----HH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCC
Confidence            4566655     45 66666553    54  378888999888887 5899999987777776542 4678899999999


Q ss_pred             CcEEEEE
Q 017068           78 GGYLVIS   84 (378)
Q Consensus        78 GG~lvis   84 (378)
                      ||+++++
T Consensus       256 gG~li~~  262 (480)
T 3b3j_A          256 SGNMFPT  262 (480)
T ss_dssp             EEEEESC
T ss_pred             CCEEEEE
Confidence            9999864

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=96.96  E-value=0.00043  Score=61.03  Aligned_cols=113  Identities=10%  Similarity=0.076  Sum_probs=70.5

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc-ccc-cccccccCCCCCCccccccccCcccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IGV-YHDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig~-~~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      .+|||+|||+|.|+.+|...+.-  +|+-.|.. ..+..+-++    |+ +-+ ..|..    .+|.+||+|.++-.|..
T Consensus        51 ~~vlD~g~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~----~~~~~~D~v~~~~p~~~  124 (207)
T 1wy7_A           51 KVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVS----EFNSRVDIVIMNPPFGS  124 (207)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGG----GCCCCCSEEEECCCCSS
T ss_pred             CEEEEeeCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHcCCCEEEEECchH----HcCCCCCEEEEcCCCcc
Confidence            58999999999999998766421  35566654 566555444    32 111 12222    23568999999877664


Q ss_pred             ccCCCCCCCCCCccceeeeecccccCCCeEEEe-CCHHHHHHHHHHHhcCCceEEE
Q 017068          299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-d~~~~~~~~~~~~~~l~W~~~~  353 (378)
                      ..      . -....++-++-|+|  ||.+++. ...+..+.+.++++...|++..
T Consensus       125 ~~------~-~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  171 (207)
T 1wy7_A          125 QR------K-HADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTH  171 (207)
T ss_dssp             SS------T-TTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEE
T ss_pred             cc------C-CchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEE
Confidence            43      1 12245666777777  5544443 2667777788887777777653

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=96.95  E-value=0.00037  Score=66.35  Aligned_cols=74  Identities=14%  Similarity=0.064  Sum_probs=50.5

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcCC-------CeEEE--EcccCCCCCCCCceeEEEecCccccccC----Ch--HHHH
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERGI-------PAFVA--MLGTRRLPFPAFSFDIVHCSRCLIPFTA----YN--ATYL   68 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg~-------~~~~~--v~dae~LPfpd~SFD~V~cs~~l~hw~~----~~--~~~L   68 (378)
                      ..|+++|+.| ..     ..|+++..       ++.+.  .+|++.+|  +++||+|+|..+ .+...    ..  ..+|
T Consensus       104 ~~V~gVD~s~-m~-----~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L  174 (276)
T 2wa2_A          104 PNVREVKAYT-LG-----TSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDIG-ESNPTAAVEASRTLTVL  174 (276)
T ss_dssp             TTEEEEEEEC-CC-----CTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHH
T ss_pred             CCEEEEECch-hh-----hhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECCC-cCCCchhhhHHHHHHHH
Confidence            3689999998 32     11222221       45677  78888866  789999999866 22222    11  1378


Q ss_pred             HHHhhcccCCc--EEEEEcC
Q 017068           69 IEVDRLLRPGG--YLVISGP   86 (378)
Q Consensus        69 ~Ev~RVLkPGG--~lvis~p   86 (378)
                      .++.|+|||||  .|++...
T Consensus       175 ~~~~r~LkpGG~~~~v~~~~  194 (276)
T 2wa2_A          175 NVISRWLEYNQGCGFCVKVL  194 (276)
T ss_dssp             HHHHHHHHHSTTCEEEEEES
T ss_pred             HHHHHHhccCCCcEEEEEeC
Confidence            99999999999  9998654

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=96.90  E-value=6.7e-05  Score=70.58  Aligned_cols=102  Identities=20%  Similarity=0.163  Sum_probs=58.2

Q ss_pred             eEEEecCCcceeeeeeccC--CC-eeEEEeccCCCC-cchHHHHhh----cc--ccc-cccccccCCC----CCCccccc
Q 017068          226 RNIMDMNAFFGGFAAALTS--DP-VWVMNVVPARKS-STLSVIYDR----GL--IGV-YHDWCEPFST----YPRTYDLI  290 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~--~~-vwvmnv~p~~~~-~~l~~i~eR----Gl--ig~-~~~w~~~f~t----yprtyDli  290 (378)
                      ..|||+|||.|+++..|..  .+ -   .|+..|.+ ..+..+-++    |+  +-+ ..|-.+ ++.    -+.+||+|
T Consensus        85 ~~VLDlgaG~G~~t~~la~~~~~~~---~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~-~~~~~~~~~~~fD~V  160 (274)
T 3ajd_A           85 DFILDMCAAPGGKTTHLAQLMKNKG---TIVAVEISKTRTKALKSNINRMGVLNTIIINADMRK-YKDYLLKNEIFFDKI  160 (274)
T ss_dssp             CEEEETTCTTCHHHHHHHHHTTTCS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHH-HHHHHHHTTCCEEEE
T ss_pred             CEEEEeCCCccHHHHHHHHHcCCCC---EEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHh-cchhhhhccccCCEE
Confidence            4799999999999988864  22 3   34666655 666655444    44  111 122221 222    14689999


Q ss_pred             cccCccccc---c-CC-----CCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          291 HVSGIESLI---K-NP-----GSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       291 H~~~~~~~~---~-~~-----~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      -++--++..   . ++     ....-.-....+|-++-|+|+|||.+++.
T Consensus       161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~s  210 (274)
T 3ajd_A          161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYS  210 (274)
T ss_dssp             EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            987332211   0 00     00000011246788889999999999996

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.89  E-value=0.00046  Score=64.09  Aligned_cols=72  Identities=18%  Similarity=0.218  Sum_probs=51.8

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY   80 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~   80 (378)
                      .|+++++.|     .+++.|+++    ++.+.+..++... ++++++||+|+++....+    ....+.++.|+|||||+
T Consensus       144 ~v~gvDi~~-----~~v~~a~~n~~~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~~~~~----~~~~l~~~~~~LkpgG~  213 (254)
T 2nxc_A          144 KALGVDIDP-----MVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAEL----HAALAPRYREALVPGGR  213 (254)
T ss_dssp             EEEEEESCG-----GGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHHH----HHHHHHHHHHHEEEEEE
T ss_pred             eEEEEECCH-----HHHHHHHHHHHHcCCcEEEEECChhh-cCcCCCCCEEEECCcHHH----HHHHHHHHHHHcCCCCE
Confidence            567777665     555555553    5556677777654 366789999998754322    23889999999999999


Q ss_pred             EEEEcC
Q 017068           81 LVISGP   86 (378)
Q Consensus        81 lvis~p   86 (378)
                      +++++.
T Consensus       214 lils~~  219 (254)
T 2nxc_A          214 ALLTGI  219 (254)
T ss_dssp             EEEEEE
T ss_pred             EEEEee
Confidence            999864

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=96.84  E-value=0.0005  Score=64.98  Aligned_cols=74  Identities=9%  Similarity=0.034  Sum_probs=50.1

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcC-------CCeEEE--EcccCCCCCCCCceeEEEecCccccccCC----h--HHHH
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERG-------IPAFVA--MLGTRRLPFPAFSFDIVHCSRCLIPFTAY----N--ATYL   68 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg-------~~~~~~--v~dae~LPfpd~SFD~V~cs~~l~hw~~~----~--~~~L   68 (378)
                      ..|+++|+.|. .     ..|+++.       .++.+.  .+|+..+|  +++||+|+|..+ .+...+    .  ..+|
T Consensus        96 ~~V~gvD~s~m-~-----~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L  166 (265)
T 2oxt_A           96 PHVMDVRAYTL-G-----VGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDVG-ESSPKWSVESERTIKIL  166 (265)
T ss_dssp             TTEEEEEEECC-C-----CSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHH
T ss_pred             CcEEEEECchh-h-----hhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeCc-ccCCccchhHHHHHHHH
Confidence            36899999983 1     1122221       145677  78887765  789999999765 322221    1  1378


Q ss_pred             HHHhhcccCCc--EEEEEcC
Q 017068           69 IEVDRLLRPGG--YLVISGP   86 (378)
Q Consensus        69 ~Ev~RVLkPGG--~lvis~p   86 (378)
                      .++.|+|||||  .|++...
T Consensus       167 ~~~~r~LkpGG~~~fv~kv~  186 (265)
T 2oxt_A          167 ELLEKWKVKNPSADFVVKVL  186 (265)
T ss_dssp             HHHHHHHHHCTTCEEEEEES
T ss_pred             HHHHHHhccCCCeEEEEEeC
Confidence            99999999999  9998654

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=96.82  E-value=0.0016  Score=61.31  Aligned_cols=42  Identities=19%  Similarity=0.120  Sum_probs=35.6

Q ss_pred             CCCceeEEEecCccccccCChHHHHHHHhhccc---C--CcEEEEEcC
Q 017068           44 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLR---P--GGYLVISGP   86 (378)
Q Consensus        44 pd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLk---P--GG~lvis~p   86 (378)
                      ++++||+|+++.+++|..+.. .+++++.|+||   |  ||.+++...
T Consensus       160 ~~~~fD~Ii~~dvl~~~~~~~-~ll~~l~~~Lk~~~p~~gG~l~v~~~  206 (281)
T 3bzb_A          160 GLQRFQVVLLADLLSFHQAHD-ALLRSVKMLLALPANDPTAVALVTFT  206 (281)
T ss_dssp             SCSSBSEEEEESCCSCGGGHH-HHHHHHHHHBCCTTTCTTCEEEEEEC
T ss_pred             cCCCCCEEEEeCcccChHHHH-HHHHHHHHHhcccCCCCCCEEEEEEE
Confidence            468999999999998866666 99999999999   9  998776543

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=96.82  E-value=0.00019  Score=65.74  Aligned_cols=75  Identities=12%  Similarity=0.215  Sum_probs=46.7

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCCC---CCC---CCceeEEEecCcccccc-----------
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRL---PFP---AFSFDIVHCSRCLIPFT-----------   61 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~L---Pfp---d~SFD~V~cs~~l~hw~-----------   61 (378)
                      .|++++++     +.+++.|+++    ++.  +.+..+|++.+   +++   +++||+|+|+--+++..           
T Consensus        91 ~v~gvD~s-----~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~  165 (254)
T 2h00_A           91 YFLATEVD-----DMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNP  165 (254)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC--------------
T ss_pred             eEEEEECC-----HHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccc
Confidence            45666555     6888888775    443  67888887652   566   37899999985444332           


Q ss_pred             ---CChHHHHHHHhhcccCCcEEEEE
Q 017068           62 ---AYNATYLIEVDRLLRPGGYLVIS   84 (378)
Q Consensus        62 ---~~~~~~L~Ev~RVLkPGG~lvis   84 (378)
                         .+....+.++.|+|||||.+.+.
T Consensus       166 ~~~~~~~~l~~~~~~~LkpgG~l~~~  191 (254)
T 2h00_A          166 RRPPPSSVNTGGITEIMAEGGELEFV  191 (254)
T ss_dssp             -----------CTTTTHHHHTHHHHH
T ss_pred             cccCCHHHHhhhHHHHEecCCEEEEE
Confidence               11124568999999999988764

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=96.81  E-value=0.00086  Score=58.30  Aligned_cols=72  Identities=14%  Similarity=0.023  Sum_probs=47.6

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcCCCeEEE-EcccCCCC--------CCCCceeEEEecCccc---cc-cCCh------
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERGIPAFVA-MLGTRRLP--------FPAFSFDIVHCSRCLI---PF-TAYN------   64 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg~~~~~~-v~dae~LP--------fpd~SFD~V~cs~~l~---hw-~~~~------   64 (378)
                      ..|++++++|...           -..+.+. .+|....+        +++++||+|+|..++.   |+ .+..      
T Consensus        56 ~~v~~vD~s~~~~-----------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~  124 (196)
T 2nyu_A           56 GFVLGVDLLHIFP-----------LEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLC  124 (196)
T ss_dssp             CEEEEECSSCCCC-----------CTTCEEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHH
T ss_pred             ceEEEEechhccc-----------CCCCeEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHH
Confidence            4588888887310           0124555 66655443        4567999999865432   22 2221      


Q ss_pred             HHHHHHHhhcccCCcEEEEEcC
Q 017068           65 ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        65 ~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      ..+++++.|+|||||.|++...
T Consensus       125 ~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A          125 LTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHhcCCCEEEEEec
Confidence            2789999999999999999864

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=96.81  E-value=0.0012  Score=61.85  Aligned_cols=81  Identities=15%  Similarity=0.110  Sum_probs=55.6

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCC----CCCceeEEEecC------ccc-----------
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPF----PAFSFDIVHCSR------CLI-----------   58 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPf----pd~SFD~V~cs~------~l~-----------   58 (378)
                      .|+++++.     +.+++.|+++    |+ .+.+..+|+..++.    ++++||+|++.-      .+.           
T Consensus       110 ~v~avD~~-----~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~  184 (274)
T 3ajd_A          110 TIVAVEIS-----KTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIK  184 (274)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEECCC------------HHHHT
T ss_pred             EEEEECCC-----HHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHH
Confidence            46666665     5777777665    55 46778888877765    378999999751      110           


Q ss_pred             cccCChHHHHHHHhhcccCCcEEEEEcCCCCC
Q 017068           59 PFTAYNATYLIEVDRLLRPGGYLVISGPPVQW   90 (378)
Q Consensus        59 hw~~~~~~~L~Ev~RVLkPGG~lvis~pp~~~   90 (378)
                      +.......+++++.++|||||++++++.....
T Consensus       185 ~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~  216 (274)
T 3ajd_A          185 YCSLRQKELIDIGIDLLKKDGELVYSTCSMEV  216 (274)
T ss_dssp             GGGTCHHHHHHHHHHHEEEEEEEEEEESCCCT
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEEECCCCh
Confidence            01123348899999999999999998764433

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=96.80  E-value=0.00028  Score=62.19  Aligned_cols=107  Identities=12%  Similarity=-0.015  Sum_probs=62.7

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh--ccccccccccccCCCCCCccccccccCccccccCC
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR--GLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNP  302 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR--Glig~~~~w~~~f~typrtyDliH~~~~~~~~~~~  302 (378)
                      ..|||+|||+|.|+.+|...+.  -.|+-.|.. ..+..+-++  .+--+..|..+    +|.+||+|.++..|..+.  
T Consensus        53 ~~vlD~gcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~----~~~~~D~v~~~~p~~~~~--  124 (200)
T 1ne2_A           53 RSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCGGVNFMVADVSE----ISGKYDTWIMNPPFGSVV--  124 (200)
T ss_dssp             SEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCTTSEEEECCGGG----CCCCEEEEEECCCC------
T ss_pred             CEEEEEeCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhcCCCEEEECcHHH----CCCCeeEEEECCCchhcc--
Confidence            5899999999999998876643  135556655 666666655  22222223322    358999999998887654  


Q ss_pred             CCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCC
Q 017068          303 GSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVR  348 (378)
Q Consensus       303 ~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~  348 (378)
                          .. ....++-++-|+|   |.+++.-+......+.++++...
T Consensus       125 ----~~-~~~~~l~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~g  162 (200)
T 1ne2_A          125 ----KH-SDRAFIDKAFETS---MWIYSIGNAKARDFLRREFSARG  162 (200)
T ss_dssp             --------CHHHHHHHHHHE---EEEEEEEEGGGHHHHHHHHHHHE
T ss_pred             ----Cc-hhHHHHHHHHHhc---CcEEEEEcCchHHHHHHHHHHCC
Confidence                11 1134566666666   44444444455566666655443

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=96.79  E-value=0.00029  Score=65.14  Aligned_cols=67  Identities=13%  Similarity=0.100  Sum_probs=40.9

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCCCeEEE------EcccCCC---CCCCCceeEEEecCccccccCChHHHHHHHhhcc
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGIPAFVA------MLGTRRL---PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLL   75 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~~------v~dae~L---Pfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVL   75 (378)
                      .|++++++|     .|++.|+++...+...      ......+   +|++.+||+++++     +   . .++.|+.|+|
T Consensus        62 ~V~gvDis~-----~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~-----l---~-~~l~~i~rvL  127 (232)
T 3opn_A           62 LVYALDVGT-----NQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS-----L---D-LILPPLYEIL  127 (232)
T ss_dssp             EEEEECSSC-----CCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC-----G---G-GTHHHHHHHS
T ss_pred             EEEEEcCCH-----HHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh-----H---H-HHHHHHHHhc
Confidence            578888777     4555666654332211      0111222   2344566665443     2   3 8999999999


Q ss_pred             cCCcEEEEEc
Q 017068           76 RPGGYLVISG   85 (378)
Q Consensus        76 kPGG~lvis~   85 (378)
                      ||||+|++..
T Consensus       128 kpgG~lv~~~  137 (232)
T 3opn_A          128 EKNGEVAALI  137 (232)
T ss_dssp             CTTCEEEEEE
T ss_pred             cCCCEEEEEE
Confidence            9999999863

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=96.79  E-value=0.00013  Score=72.18  Aligned_cols=122  Identities=16%  Similarity=0.203  Sum_probs=67.9

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc-cc----ccccccccCCCC---CCccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IG----VYHDWCEPFSTY---PRTYDLIHV  292 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig----~~~~w~~~f~ty---prtyDliH~  292 (378)
                      .+|||+|||+|+|+.++.....  -.|+..|.+ ..+..+-++    |+ -+    +..|..+.++..   ..+||+|.+
T Consensus       222 ~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~  299 (396)
T 3c0k_A          222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_dssp             CEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence            5899999999999999987631  144555654 455443332    33 11    112222211111   358999998


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH------HHHHHHHHHHhcCCc
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP------EVIDKVSRIANTVRW  349 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~------~~~~~~~~~~~~l~W  349 (378)
                      +--+..............+..++.++-|+|+|||.+++....      ...+.+++.+.....
T Consensus       300 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~  362 (396)
T 3c0k_A          300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGR  362 (396)
T ss_dssp             CCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCC
Confidence            743221100001111133457888899999999999997432      234445545444443

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=96.77  E-value=0.00077  Score=64.92  Aligned_cols=75  Identities=16%  Similarity=0.201  Sum_probs=54.2

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC----------CCeEEEEcccCC-CCCCCCceeEEEecCccccc---cCC----hHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG----------IPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPF---TAY----NAT   66 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg----------~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw---~~~----~~~   66 (378)
                      .|+++++.     +.+++.|+++-          ..+.+..+|+.. ++..+++||+|++... .|+   ...    ...
T Consensus       103 ~v~~vDid-----~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~-~~~~~~~~~~~l~~~~  176 (314)
T 1uir_A          103 KAVMVDID-----GELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLT-DPVGEDNPARLLYTVE  176 (314)
T ss_dssp             EEEEEESC-----HHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECC-CCBSTTCGGGGGSSHH
T ss_pred             EEEEEECC-----HHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEECCC-CcccccCcchhccHHH
Confidence            45666655     58888888742          246778888765 5566889999998754 354   211    138


Q ss_pred             HHHHHhhcccCCcEEEEEc
Q 017068           67 YLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        67 ~L~Ev~RVLkPGG~lvis~   85 (378)
                      +++++.|+|||||.+++..
T Consensus       177 ~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          177 FYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             HHHHHHHTEEEEEEEEEEE
T ss_pred             HHHHHHHhcCCCcEEEEEc
Confidence            8999999999999999864

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=96.76  E-value=0.00018  Score=73.21  Aligned_cols=97  Identities=9%  Similarity=0.070  Sum_probs=56.7

Q ss_pred             eeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHH-------Hh----hcc----ccccc--ccccc--CCCC
Q 017068          225 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVI-------YD----RGL----IGVYH--DWCEP--FSTY  283 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i-------~e----RGl----ig~~~--~w~~~--f~ty  283 (378)
                      -..|||+|||+|.+++.|... +.-  .|+-.|.. .++..+       -+    .|+    +-+.+  ++...  |+..
T Consensus       243 g~~VLDLGCGsG~la~~LA~~~g~~--~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~  320 (433)
T 1u2z_A          243 GDTFMDLGSGVGNCVVQAALECGCA--LSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL  320 (433)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCCS--EEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred             CCEEEEeCCCcCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccc
Confidence            357999999999999888753 210  23334433 333333       22    242    11111  22211  1111


Q ss_pred             CCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          284 PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       284 prtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      ..+||+|.++..+  +.        -.+...|-|+-|+|+|||.+|+.+.
T Consensus       321 ~~~FDvIvvn~~l--~~--------~d~~~~L~el~r~LKpGG~lVi~d~  360 (433)
T 1u2z_A          321 IPQCDVILVNNFL--FD--------EDLNKKVEKILQTAKVGCKIISLKS  360 (433)
T ss_dssp             GGGCSEEEECCTT--CC--------HHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             cCCCCEEEEeCcc--cc--------ccHHHHHHHHHHhCCCCeEEEEeec
Confidence            3689999986433  11        1234677899999999999999863

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=96.72  E-value=0.00029  Score=64.73  Aligned_cols=72  Identities=13%  Similarity=0.170  Sum_probs=54.2

Q ss_pred             cCCCCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068           11 FAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS   84 (378)
Q Consensus        11 ~ap~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis   84 (378)
                      +...|+++.|+++|+++    |+...+.+.|.... .+.+.||+|....++++. +....++..+.+.|||||.||-.
T Consensus        76 ~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~LHlL-~~~~~al~~v~~~L~pggvfISf  151 (200)
T 3fzg_A           76 YHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKMLPVL-KQQDVNILDFLQLFHTQNFVISF  151 (200)
T ss_dssp             EEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCHHHH-HHTTCCHHHHHHTCEEEEEEEEE
T ss_pred             EEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHHHhh-hhhHHHHHHHHHHhCCCCEEEEe
Confidence            44457778999999886    55545555665433 577999999999998888 44337777999999999999854

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=96.71  E-value=0.00014  Score=71.68  Aligned_cols=121  Identities=17%  Similarity=0.198  Sum_probs=70.6

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----ccc--ccc-ccccccCCCC---CCcccccccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLI--GVY-HDWCEPFSTY---PRTYDLIHVS  293 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gli--g~~-~~w~~~f~ty---prtyDliH~~  293 (378)
                      =.+|||+|||+|+|+.++...   .-+|+-.|.+ ..+..+-++    |+-  -++ .|..+.++..   +.+||+|.++
T Consensus       210 ~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d  286 (382)
T 1wxx_A          210 GERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  286 (382)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence            368999999999999988876   3366777765 555544433    431  111 1222211111   4689999986


Q ss_pred             CccccccCCCCCCC----CCCccceeeeecccccCCCeEEEeCC-----HH-HHHHHHHHHhcCCceEE
Q 017068          294 GIESLIKNPGSNKN----SCSLVDLMVEMDRMLRPEGTVVVRDS-----PE-VIDKVSRIANTVRWTAA  352 (378)
Q Consensus       294 ~~~~~~~~~~~~~~----~c~~~~~l~EmDRiLRPgG~~ii~d~-----~~-~~~~~~~~~~~l~W~~~  352 (378)
                      --.....    ...    .-....++.++-|+|+|||.+++...     .+ ..+.+++.+.....+..
T Consensus       287 pP~~~~~----~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~  351 (382)
T 1wxx_A          287 PPAFAKG----KKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLR  351 (382)
T ss_dssp             CCCSCCS----TTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCCCC----hhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            3321110    000    01124688889999999999999743     22 34455555555554443

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=96.71  E-value=0.0016  Score=63.67  Aligned_cols=71  Identities=15%  Similarity=0.143  Sum_probs=51.5

Q ss_pred             CChHHHHHHHHHcC-----CCeEEEEcccCCC--CCCCCceeEEEecCccccccCC----hHHHHHHHhhcccCCcEEEE
Q 017068           15 DSHKAQIQFALERG-----IPAFVAMLGTRRL--PFPAFSFDIVHCSRCLIPFTAY----NATYLIEVDRLLRPGGYLVI   83 (378)
Q Consensus        15 D~se~~vq~A~erg-----~~~~~~v~dae~L--Pfpd~SFD~V~cs~~l~hw~~~----~~~~L~Ev~RVLkPGG~lvi   83 (378)
                      |+++.+++.|+++-     ..+.+.++|+...  .+++++||+|++.. ..++..+    ...+++++.|+|||||.|++
T Consensus       120 Eidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~-~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~  198 (317)
T 3gjy_A          120 ELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDV-FAGAITPQNFTTVEFFEHCHRGLAPGGLYVA  198 (317)
T ss_dssp             ESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECC-STTSCCCGGGSBHHHHHHHHHHEEEEEEEEE
T ss_pred             ECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECC-CCccccchhhhHHHHHHHHHHhcCCCcEEEE
Confidence            44579999999862     2367788887553  46789999999853 3333211    13899999999999999998


Q ss_pred             EcC
Q 017068           84 SGP   86 (378)
Q Consensus        84 s~p   86 (378)
                      ...
T Consensus       199 ~~~  201 (317)
T 3gjy_A          199 NCG  201 (317)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            653

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=96.71  E-value=0.002  Score=66.07  Aligned_cols=75  Identities=17%  Similarity=0.213  Sum_probs=51.7

Q ss_pred             CChHHHHHHHHHc----CC-CeEEEEcccCCCCC-CCCceeEEEec-----Cc-c-------ccccCC--------hHHH
Q 017068           15 DSHKAQIQFALER----GI-PAFVAMLGTRRLPF-PAFSFDIVHCS-----RC-L-------IPFTAY--------NATY   67 (378)
Q Consensus        15 D~se~~vq~A~er----g~-~~~~~v~dae~LPf-pd~SFD~V~cs-----~~-l-------~hw~~~--------~~~~   67 (378)
                      |+|+.+++.|+++    |+ .+.+..+|+..++. .+++||.|+|.     .. +       .+|...        ...+
T Consensus       149 Dis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~i  228 (479)
T 2frx_A          149 EFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQREL  228 (479)
T ss_dssp             CSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHH
T ss_pred             ECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHH
Confidence            4456778777765    55 46677888888764 57899999972     11 1       122211        1368


Q ss_pred             HHHHhhcccCCcEEEEEcCCCC
Q 017068           68 LIEVDRLLRPGGYLVISGPPVQ   89 (378)
Q Consensus        68 L~Ev~RVLkPGG~lvis~pp~~   89 (378)
                      |.++.|+|||||++++++-...
T Consensus       229 L~~a~~~LkpGG~LvysTcs~~  250 (479)
T 2frx_A          229 IDSAFHALRPGGTLVYSTCTLN  250 (479)
T ss_dssp             HHHHHHHEEEEEEEEEEESCCS
T ss_pred             HHHHHHhcCCCCEEEEecccCC
Confidence            9999999999999999876443

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=96.69  E-value=0.0023  Score=60.10  Aligned_cols=71  Identities=10%  Similarity=0.096  Sum_probs=53.6

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      .|+++++.     +.+++.|+++    ++ ++.+..+|+..+|. +++||+|++....    ... ..+.++.|+|||||
T Consensus       145 ~V~~vD~s-----~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~----~~~-~~l~~~~~~LkpgG  213 (272)
T 3a27_A          145 LVYAIEKN-----PTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH----KTH-KFLDKTFEFLKDRG  213 (272)
T ss_dssp             EEEEEECC-----HHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS----SGG-GGHHHHHHHEEEEE
T ss_pred             EEEEEeCC-----HHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc----cHH-HHHHHHHHHcCCCC
Confidence            46667665     5777777663    44 46788889887755 6789999986543    333 78999999999999


Q ss_pred             EEEEEcC
Q 017068           80 YLVISGP   86 (378)
Q Consensus        80 ~lvis~p   86 (378)
                      .++++..
T Consensus       214 ~l~~s~~  220 (272)
T 3a27_A          214 VIHYHET  220 (272)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEc
Confidence            9998765

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=96.67  E-value=0.00081  Score=65.12  Aligned_cols=71  Identities=15%  Similarity=0.073  Sum_probs=48.0

Q ss_pred             CChHHHHHHHHHcC---------CCeEEEEcccCC-CCCCCCceeEEEecCccccccCCh----HHHHHHHhhcccCCcE
Q 017068           15 DSHKAQIQFALERG---------IPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAYN----ATYLIEVDRLLRPGGY   80 (378)
Q Consensus        15 D~se~~vq~A~erg---------~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~~----~~~L~Ev~RVLkPGG~   80 (378)
                      |+++.+++.|+++-         ..+.+..+|+.. ++.++++||+|++.. ..++....    ..+++++.|+|||||.
T Consensus       139 Did~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d~-~~~~~~~~~l~t~~~l~~~~~~LkpgG~  217 (314)
T 2b2c_A          139 EIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDS-SDPVGPAESLFGQSYYELLRDALKEDGI  217 (314)
T ss_dssp             CSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECC-C-------------HHHHHHHHEEEEEE
T ss_pred             ECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEcC-CCCCCcchhhhHHHHHHHHHhhcCCCeE
Confidence            45578999998862         235677777654 455678999999854 34443221    3789999999999999


Q ss_pred             EEEEcC
Q 017068           81 LVISGP   86 (378)
Q Consensus        81 lvis~p   86 (378)
                      +++...
T Consensus       218 lv~~~~  223 (314)
T 2b2c_A          218 LSSQGE  223 (314)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999753

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=96.66  E-value=0.0016  Score=61.59  Aligned_cols=76  Identities=9%  Similarity=0.106  Sum_probs=54.3

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC---------CCeEEEEcccCC-CCCCCCceeEEEecCccccccCC----hHHHHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAY----NATYLIE   70 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg---------~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~----~~~~L~E   70 (378)
                      .|+++++.     +.+++.|+++-         ..+.+..+|+.. ++..+++||+|++... .++...    ...++++
T Consensus       101 ~v~~vEid-----~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d~~-~~~~~~~~l~~~~~~~~  174 (275)
T 1iy9_A          101 KATLVDID-----GKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDST-EPVGPAVNLFTKGFYAG  174 (275)
T ss_dssp             EEEEEESC-----HHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCS-SCCSCCCCCSTTHHHHH
T ss_pred             eEEEEECC-----HHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEECCC-CCCCcchhhhHHHHHHH
Confidence            45666655     68899888752         246778888654 5556789999998543 343221    1379999


Q ss_pred             HhhcccCCcEEEEEcC
Q 017068           71 VDRLLRPGGYLVISGP   86 (378)
Q Consensus        71 v~RVLkPGG~lvis~p   86 (378)
                      +.|+|||||.+++...
T Consensus       175 ~~~~L~pgG~lv~~~~  190 (275)
T 1iy9_A          175 IAKALKEDGIFVAQTD  190 (275)
T ss_dssp             HHHHEEEEEEEEEECC
T ss_pred             HHHhcCCCcEEEEEcC
Confidence            9999999999999754

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=96.65  E-value=0.00057  Score=63.59  Aligned_cols=138  Identities=11%  Similarity=0.116  Sum_probs=87.0

Q ss_pred             hhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hccc----cccccccccCCCCCCc
Q 017068          216 LNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLI----GVYHDWCEPFSTYPRT  286 (378)
Q Consensus       216 ~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGli----g~~~~w~~~f~typrt  286 (378)
                      +...+..|  -.|+|+|||+|.++.+|....- .-.|+..|-. ..+..+-+    .|+-    -...|+-+.++.. ..
T Consensus         9 l~~~v~~g--~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~-~~   84 (225)
T 3kr9_A            9 VASFVSQG--AILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEET-DQ   84 (225)
T ss_dssp             HHTTSCTT--EEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG-GC
T ss_pred             HHHhCCCC--CEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccC-cC
Confidence            44456666  4799999999999999976531 1135666654 55544433    3552    2345555555431 15


Q ss_pred             cccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEec--CCCCCCCCe
Q 017068          287 YDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHD--KEPGSNGRE  364 (378)
Q Consensus       287 yDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~~--~~~~~~~~e  364 (378)
                      ||+|-.++.-.           ..|..+|-+.-..|+|+|++|++.. .-...+.+.+....|.+....  .|++  .--
T Consensus        85 ~D~IviaG~Gg-----------~~i~~Il~~~~~~L~~~~~lVlq~~-~~~~~vr~~L~~~Gf~i~~e~lv~e~~--~~Y  150 (225)
T 3kr9_A           85 VSVITIAGMGG-----------RLIARILEEGLGKLANVERLILQPN-NREDDLRIWLQDHGFQIVAESILEEAG--KFY  150 (225)
T ss_dssp             CCEEEEEEECH-----------HHHHHHHHHTGGGCTTCCEEEEEES-SCHHHHHHHHHHTTEEEEEEEEEEETT--EEE
T ss_pred             CCEEEEcCCCh-----------HHHHHHHHHHHHHhCCCCEEEEECC-CCHHHHHHHHHHCCCEEEEEEEEEECC--EEE
Confidence            89876543322           1235678888899999999999876 457788888888899987532  1221  224


Q ss_pred             EEEEEEe
Q 017068          365 KILVATK  371 (378)
Q Consensus       365 ~~l~~~K  371 (378)
                      .||++.+
T Consensus       151 eii~~~~  157 (225)
T 3kr9_A          151 EILVVEA  157 (225)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            5666655

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=96.65  E-value=0.0014  Score=64.12  Aligned_cols=76  Identities=17%  Similarity=0.162  Sum_probs=53.2

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC---------CCeEEEEcccCCC--CCCCCceeEEEecCcccccc--CC--hHHHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRRL--PFPAFSFDIVHCSRCLIPFT--AY--NATYLI   69 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg---------~~~~~~v~dae~L--Pfpd~SFD~V~cs~~l~hw~--~~--~~~~L~   69 (378)
                      .|+++++.     +.+++.|+++-         ..+.+..+|+...  .+++++||+|++... .++.  +.  ...+++
T Consensus       146 ~V~~VDis-----~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~-~p~~~~~~l~~~~~l~  219 (334)
T 1xj5_A          146 QIDMCEID-----KMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSS-DPIGPAKELFEKPFFQ  219 (334)
T ss_dssp             EEEEEESC-----HHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCC-CTTSGGGGGGSHHHHH
T ss_pred             EEEEEECC-----HHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEECCC-CccCcchhhhHHHHHH
Confidence            45666555     68888888752         2467888887543  246789999998543 2222  11  138999


Q ss_pred             HHhhcccCCcEEEEEcC
Q 017068           70 EVDRLLRPGGYLVISGP   86 (378)
Q Consensus        70 Ev~RVLkPGG~lvis~p   86 (378)
                      ++.|+|||||.|++...
T Consensus       220 ~~~~~LkpgG~lv~~~~  236 (334)
T 1xj5_A          220 SVARALRPGGVVCTQAE  236 (334)
T ss_dssp             HHHHHEEEEEEEEEECC
T ss_pred             HHHHhcCCCcEEEEecC
Confidence            99999999999999743

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=96.62  E-value=0.00064  Score=66.41  Aligned_cols=141  Identities=13%  Similarity=0.056  Sum_probs=75.7

Q ss_pred             eeEEEecCCcceeeeeeccC-C-CeeEEEeccCCCC-cchHHHHhhc-c-----cc-ccccccccCCCC-CCcccccccc
Q 017068          225 IRNIMDMNAFFGGFAAALTS-D-PVWVMNVVPARKS-STLSVIYDRG-L-----IG-VYHDWCEPFSTY-PRTYDLIHVS  293 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~-~-~vwvmnv~p~~~~-~~l~~i~eRG-l-----ig-~~~~w~~~f~ty-prtyDliH~~  293 (378)
                      -.+|||+|||.|+++..|+. . .+   .|+-++-. ..+.++-++- +     +- +..|-.+-...+ +.+||+|.++
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~---~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D  166 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQS---RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRD  166 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTC---EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEEC
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCc---EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEEC
Confidence            34899999999999999986 3 34   44555544 5555544331 1     11 112222212233 3799999986


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC----HHHHHHH-HHHHhcCCceEEEe-cC--CCCCCCCeE
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS----PEVIDKV-SRIANTVRWTAAVH-DK--EPGSNGREK  365 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~----~~~~~~~-~~~~~~l~W~~~~~-~~--~~~~~~~e~  365 (378)
                      . |....   .+ ..-.-..++-++-|+|+|||.+++.-.    ...+..+ +.+.+.+. .+... +.  ..|......
T Consensus       167 ~-~~~~~---~~-~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~-~v~~~~~~~~~~g~~~gN~  240 (317)
T 3gjy_A          167 V-FAGAI---TP-QNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFE-HVAVIADPPMLKGRRYGNI  240 (317)
T ss_dssp             C-STTSC---CC-GGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCS-EEEEEECHHHHTTSSCEEE
T ss_pred             C-CCccc---cc-hhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCC-ceEEEEecCCCCCCcCceE
Confidence            3 32211   00 111114678899999999999988632    1222222 22333332 33332 11  112223567


Q ss_pred             EEEEEecCC
Q 017068          366 ILVATKSLW  374 (378)
Q Consensus       366 ~l~~~K~~w  374 (378)
                      ||+|.|.-.
T Consensus       241 Vl~As~~pl  249 (317)
T 3gjy_A          241 ILMGSDTEF  249 (317)
T ss_dssp             EEEEESSCC
T ss_pred             EEEEECCCC
Confidence            899988653

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=96.62  E-value=0.0012  Score=62.66  Aligned_cols=76  Identities=16%  Similarity=0.185  Sum_probs=53.4

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC---------CCeEEEEcccCC-CCCCCCceeEEEecCccccccCCh----HHHHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAYN----ATYLIE   70 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg---------~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~~----~~~L~E   70 (378)
                      .|+++++.     +.+++.|+++-         ..+.+..+|+.. ++..+++||+|++... .++....    ..++++
T Consensus       104 ~v~~vDid-----~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~-~~~~~~~~l~~~~~l~~  177 (283)
T 2i7c_A          104 NIDICEID-----ETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSS-DPIGPAETLFNQNFYEK  177 (283)
T ss_dssp             EEEEEESC-----HHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECC-CTTTGGGGGSSHHHHHH
T ss_pred             EEEEEECC-----HHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEcCC-CCCCcchhhhHHHHHHH
Confidence            45555554     68999998862         235777888654 3444789999998543 3332221    389999


Q ss_pred             HhhcccCCcEEEEEcC
Q 017068           71 VDRLLRPGGYLVISGP   86 (378)
Q Consensus        71 v~RVLkPGG~lvis~p   86 (378)
                      +.|+|||||.+++...
T Consensus       178 ~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          178 IYNALKPNGYCVAQCE  193 (283)
T ss_dssp             HHHHEEEEEEEEEECC
T ss_pred             HHHhcCCCcEEEEECC
Confidence            9999999999999754

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=96.61  E-value=0.00074  Score=67.64  Aligned_cols=104  Identities=23%  Similarity=0.306  Sum_probs=58.7

Q ss_pred             eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhh----cc-ccc-cccccccCCCCC-CccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GL-IGV-YHDWCEPFSTYP-RTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig~-~~~w~~~f~typ-rtyDliH~~~~  295 (378)
                      ..|||+|||.|+++..|...  +.   .|+..|.+ ..+..+-++    |+ +-+ ..|....-+.++ .+||+|-++--
T Consensus       248 ~~VLDlgaG~G~~t~~la~~~~~~---~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P  324 (429)
T 1sqg_A          248 EHILDLCAAPGGKTTHILEVAPEA---QVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP  324 (429)
T ss_dssp             CEEEEESCTTCHHHHHHHHHCTTC---EEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred             CeEEEECCCchHHHHHHHHHcCCC---EEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCC
Confidence            47999999999999888643  12   45666654 666665554    54 111 122222111133 68999986421


Q ss_pred             ccc---c-cCCCCC--CCCCCc-------cceeeeecccccCCCeEEEeC
Q 017068          296 ESL---I-KNPGSN--KNSCSL-------VDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       296 ~~~---~-~~~~~~--~~~c~~-------~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .|.   + ..|+..  ...-.+       ..+|-++-|+|+|||.++++.
T Consensus       325 csg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst  374 (429)
T 1sqg_A          325 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  374 (429)
T ss_dssp             CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            111   1 100000  000011       266888999999999999974

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=96.60  E-value=0.00069  Score=68.42  Aligned_cols=104  Identities=15%  Similarity=0.219  Sum_probs=60.4

Q ss_pred             eEEEecCCcceeeeeeccCC--C-eeEEEeccCCCC-cchHHHHhh----cc--cc-ccccccccCCCCC-Ccccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD--P-VWVMNVVPARKS-STLSVIYDR----GL--IG-VYHDWCEPFSTYP-RTYDLIHVS  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~--~-vwvmnv~p~~~~-~~l~~i~eR----Gl--ig-~~~~w~~~f~typ-rtyDliH~~  293 (378)
                      ..|||+|||.|+++..|...  + -   .|+..|.+ ..+..+-++    |+  +- +..|....-+.++ .+||+|-++
T Consensus       261 ~~VLDlgaG~G~~t~~la~~~~~~~---~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D  337 (450)
T 2yxl_A          261 ETVVDLAAAPGGKTTHLAELMKNKG---KIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLD  337 (450)
T ss_dssp             CEEEESSCTTCHHHHHHHHHTTTCS---EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEE
T ss_pred             CEEEEeCCCccHHHHHHHHHcCCCC---EEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEc
Confidence            47999999999999888642  2 3   35666765 666665555    55  21 1223332212255 789999863


Q ss_pred             ----CccccccCCCCC--CCCCCc-------cceeeeecccccCCCeEEEeC
Q 017068          294 ----GIESLIKNPGSN--KNSCSL-------VDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       294 ----~~~~~~~~~~~~--~~~c~~-------~~~l~EmDRiLRPgG~~ii~d  332 (378)
                          +.-..-..|+..  ...-++       ..+|-++-|+|+|||.+++..
T Consensus       338 ~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~t  389 (450)
T 2yxl_A          338 APCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTT  389 (450)
T ss_dssp             CCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence                221100000000  000011       357888999999999999863

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=96.60  E-value=0.0063  Score=60.83  Aligned_cols=82  Identities=16%  Similarity=0.127  Sum_probs=54.8

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCC--CCCCceeEEEe----cC--ccccccC-------Ch-----
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP--FPAFSFDIVHC----SR--CLIPFTA-------YN-----   64 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LP--fpd~SFD~V~c----s~--~l~hw~~-------~~-----   64 (378)
                      .|+++++.+.-..... +.+.+.|+.+.+..+|+..++  +++++||+|++    +.  ++.+-++       ..     
T Consensus       272 ~v~a~D~~~~~l~~~~-~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~  350 (429)
T 1sqg_A          272 QVVAVDIDEQRLSRVY-DNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELA  350 (429)
T ss_dssp             EEEEEESSTTTHHHHH-HHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHH
T ss_pred             EEEEECCCHHHHHHHH-HHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHH
Confidence            5778887764332222 223334777788888988887  77889999985    21  1112111       10     


Q ss_pred             ---HHHHHHHhhcccCCcEEEEEcCC
Q 017068           65 ---ATYLIEVDRLLRPGGYLVISGPP   87 (378)
Q Consensus        65 ---~~~L~Ev~RVLkPGG~lvis~pp   87 (378)
                         ..++.++.++|||||++++++-.
T Consensus       351 ~~q~~~L~~a~~~LkpGG~lvystcs  376 (429)
T 1sqg_A          351 QLQSEILDAIWPHLKTGGTLVYATCS  376 (429)
T ss_dssp             HHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEECC
Confidence               27799999999999999998753

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=96.60  E-value=0.0011  Score=63.77  Aligned_cols=75  Identities=13%  Similarity=0.171  Sum_probs=51.6

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc---------CCCeEEEEcccCC-CCCCCCceeEEEecCccccccCC----hHHHHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALER---------GIPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAY----NATYLIE   70 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er---------g~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~----~~~~L~E   70 (378)
                      .|+++++.     +.+++.|+++         ...+.+..+|+.. ++..+++||+|++... .++...    ...++++
T Consensus       121 ~v~~vDid-----~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d~~-~~~~~~~~l~~~~~l~~  194 (304)
T 2o07_A          121 SVVQCEID-----EDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSS-DPMGPAESLFKESYYQL  194 (304)
T ss_dssp             EEEEEESC-----HHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC------------CHHHHH
T ss_pred             EEEEEECC-----HHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEECCC-CCCCcchhhhHHHHHHH
Confidence            45666555     6888888875         2246777888754 5667889999998543 333211    1268999


Q ss_pred             HhhcccCCcEEEEEc
Q 017068           71 VDRLLRPGGYLVISG   85 (378)
Q Consensus        71 v~RVLkPGG~lvis~   85 (378)
                      +.|+|||||.+++..
T Consensus       195 ~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          195 MKTALKEDGVLCCQG  209 (304)
T ss_dssp             HHHHEEEEEEEEEEE
T ss_pred             HHhccCCCeEEEEec
Confidence            999999999999865

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.60  E-value=0.00067  Score=60.58  Aligned_cols=73  Identities=19%  Similarity=0.301  Sum_probs=50.9

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCC-CCC-CC----CceeEEEecCccccccCChHHHHHHHh
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRR-LPF-PA----FSFDIVHCSRCLIPFTAYNATYLIEVD   72 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~-LPf-pd----~SFD~V~cs~~l~hw~~~~~~~L~Ev~   72 (378)
                      .|+++++.     +.+++.|+++    ++.  +.+..+|+.. ++. ++    ++||+|++...    ......+++++.
T Consensus        91 ~v~~vD~~-----~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~----~~~~~~~l~~~~  161 (225)
T 3tr6_A           91 TLITCDVD-----EKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD----KANTDLYYEESL  161 (225)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC----GGGHHHHHHHHH
T ss_pred             EEEEEeCC-----HHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCC----HHHHHHHHHHHH
Confidence            46666655     5778777765    443  6788888633 332 22    89999996442    232348899999


Q ss_pred             hcccCCcEEEEEcC
Q 017068           73 RLLRPGGYLVISGP   86 (378)
Q Consensus        73 RVLkPGG~lvis~p   86 (378)
                      |+|||||++++...
T Consensus       162 ~~L~pgG~lv~~~~  175 (225)
T 3tr6_A          162 KLLREGGLIAVDNV  175 (225)
T ss_dssp             HHEEEEEEEEEECS
T ss_pred             HhcCCCcEEEEeCC
Confidence            99999999999754

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=96.59  E-value=0.0018  Score=59.97  Aligned_cols=73  Identities=15%  Similarity=0.150  Sum_probs=51.9

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCC-CCC------CCCceeEEEecCccccccCChHHHHHH
Q 017068            4 ENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRR-LPF------PAFSFDIVHCSRCLIPFTAYNATYLIE   70 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~-LPf------pd~SFD~V~cs~~l~hw~~~~~~~L~E   70 (378)
                      ..|+++++.|     .+++.|+++    |+  .+.+..+|+.. +|.      ++++||+|++...    ......++++
T Consensus       105 ~~v~~iD~s~-----~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~----~~~~~~~l~~  175 (247)
T 1sui_A          105 GKILAMDINK-----ENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDAD----KDNYLNYHKR  175 (247)
T ss_dssp             CEEEEEESCC-----HHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSC----STTHHHHHHH
T ss_pred             CEEEEEECCH-----HHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCc----hHHHHHHHHH
Confidence            4577777775     667776654    54  36777888754 342      2689999998643    2223489999


Q ss_pred             HhhcccCCcEEEEEc
Q 017068           71 VDRLLRPGGYLVISG   85 (378)
Q Consensus        71 v~RVLkPGG~lvis~   85 (378)
                      +.|+|||||++++..
T Consensus       176 ~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          176 LIDLVKVGGVIGYDN  190 (247)
T ss_dssp             HHHHBCTTCCEEEEC
T ss_pred             HHHhCCCCeEEEEec
Confidence            999999999999864

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=96.59  E-value=0.00092  Score=65.67  Aligned_cols=112  Identities=12%  Similarity=0.041  Sum_probs=73.9

Q ss_pred             eEEEecCCcceeeeeeccCC-C-eeEEEeccCCCC-cchHHHHhh----cc--cc-ccccccccCCC-CCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSD-P-VWVMNVVPARKS-STLSVIYDR----GL--IG-VYHDWCEPFST-YPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-~-vwvmnv~p~~~~-~~l~~i~eR----Gl--ig-~~~~w~~~f~t-yprtyDliH~~~  294 (378)
                      ..|||+| |+|.++.+|... + .   .|+-.|.+ .++.++-++    |+  +- +..|..+.+|. .+.+||+|-++.
T Consensus       174 ~~VLDlG-G~G~~~~~la~~~~~~---~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~  249 (373)
T 2qm3_A          174 KDIFVLG-DDDLTSIALMLSGLPK---RIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP  249 (373)
T ss_dssp             CEEEEES-CTTCHHHHHHHHTCCS---EEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred             CEEEEEC-CCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence            6899999 999999888643 2 3   55777765 777766555    54  22 34556655654 456999999976


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCe-EEEe--C---CHHHHHHHHHHHh-cCCceE
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGT-VVVR--D---SPEVIDKVSRIAN-TVRWTA  351 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~-~ii~--d---~~~~~~~~~~~~~-~l~W~~  351 (378)
                      .|...          .+..++-++-|+|+|||. +++.  .   +...+..++++++ .+....
T Consensus       250 p~~~~----------~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  303 (373)
T 2qm3_A          250 PETLE----------AIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVI  303 (373)
T ss_dssp             CSSHH----------HHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEE
T ss_pred             CCchH----------HHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcch
Confidence            55432          136788899999999993 3443  2   2333366667666 665554

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=96.59  E-value=0.0016  Score=66.59  Aligned_cols=74  Identities=27%  Similarity=0.284  Sum_probs=51.3

Q ss_pred             CChHHHHHHHHHc----CCCeEEEEcccCCCC-CCCCceeEEEe----cC---------ccccccCC--------hHHHH
Q 017068           15 DSHKAQIQFALER----GIPAFVAMLGTRRLP-FPAFSFDIVHC----SR---------CLIPFTAY--------NATYL   68 (378)
Q Consensus        15 D~se~~vq~A~er----g~~~~~~v~dae~LP-fpd~SFD~V~c----s~---------~l~hw~~~--------~~~~L   68 (378)
                      |+|+.+++.|+++    |+.+.+..+|+..++ +.+++||+|++    +-         ...+|...        ...+|
T Consensus       133 Dis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL  212 (464)
T 3m6w_A          133 EVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALL  212 (464)
T ss_dssp             CSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHH
T ss_pred             ECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHH
Confidence            4556788777765    666777778887776 45789999994    21         11122211        13689


Q ss_pred             HHHhhcccCCcEEEEEcCCC
Q 017068           69 IEVDRLLRPGGYLVISGPPV   88 (378)
Q Consensus        69 ~Ev~RVLkPGG~lvis~pp~   88 (378)
                      .++.++|||||+|++++-..
T Consensus       213 ~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          213 AQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             HHHHTTEEEEEEEEEEESCC
T ss_pred             HHHHHhcCCCcEEEEEeccC
Confidence            99999999999999986533

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=96.58  E-value=0.0036  Score=54.89  Aligned_cols=69  Identities=6%  Similarity=-0.065  Sum_probs=48.7

Q ss_pred             eEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEE
Q 017068            6 ILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVIS   84 (378)
Q Consensus         6 v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis   84 (378)
                      |++++++     +.+++.|+++...+.+..+|+..+|   ++||+|+++..++|+.+.. ...++++.|+|  |+.+++.
T Consensus        77 v~~vD~~-----~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~  146 (200)
T 1ne2_A           77 VTAFDID-----PDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIG  146 (200)
T ss_dssp             EEEEESC-----HHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC-------CHHHHHHHHHHE--EEEEEEE
T ss_pred             EEEEECC-----HHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccCchhHHHHHHHHHhc--CcEEEEE
Confidence            5666554     6899999987546788889988875   7899999998887775422 37899999999  5544444

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=96.56  E-value=0.0013  Score=65.64  Aligned_cols=45  Identities=22%  Similarity=0.325  Sum_probs=36.2

Q ss_pred             CCCCCCceeEEEecCccccccCC-h-------------------------------------HHHHHHHhhcccCCcEEE
Q 017068           41 LPFPAFSFDIVHCSRCLIPFTAY-N-------------------------------------ATYLIEVDRLLRPGGYLV   82 (378)
Q Consensus        41 LPfpd~SFD~V~cs~~l~hw~~~-~-------------------------------------~~~L~Ev~RVLkPGG~lv   82 (378)
                      -.||++|||+|+++.++ ||... +                                     ..+|+...|.|+|||.++
T Consensus       144 rlfP~~S~d~v~Ss~aL-HWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mv  222 (374)
T 3b5i_A          144 RLFPARTIDFFHSAFSL-HWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMF  222 (374)
T ss_dssp             CCSCTTCEEEEEEESCT-TBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ccCCCcceEEEEeccee-eeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            45999999999999987 67541 1                                     135788899999999999


Q ss_pred             EEcC
Q 017068           83 ISGP   86 (378)
Q Consensus        83 is~p   86 (378)
                      ++..
T Consensus       223 l~~~  226 (374)
T 3b5i_A          223 LVCL  226 (374)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9755

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=96.53  E-value=0.0014  Score=64.26  Aligned_cols=139  Identities=15%  Similarity=0.133  Sum_probs=71.8

Q ss_pred             EEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhhccccccccccccCCCCCCccccccccCccccccCC
Q 017068          227 NIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNP  302 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f~typrtyDliH~~~~~~~~~~~  302 (378)
                      .|||+|||+|+|+.++.++   ..   +|.-.|-. ..+..+ + .+--...|..+..  .+..||+|-+.--|......
T Consensus        42 ~vLD~gcGtG~~~~~~~~~~~~~~---~i~gvDi~~~~~~~a-~-~~~~~~~D~~~~~--~~~~fD~Ii~NPPy~~~~~~  114 (421)
T 2ih2_A           42 RVLEPACAHGPFLRAFREAHGTAY---RFVGVEIDPKALDLP-P-WAEGILADFLLWE--PGEAFDLILGNPPYGIVGEA  114 (421)
T ss_dssp             EEEEETCTTCHHHHHHHHHHCSCS---EEEEEESCTTTCCCC-T-TEEEEESCGGGCC--CSSCEEEEEECCCCCCBSCT
T ss_pred             EEEECCCCChHHHHHHHHHhCCCC---eEEEEECCHHHHHhC-C-CCcEEeCChhhcC--ccCCCCEEEECcCccCcccc
Confidence            8999999999999988753   22   33444432 333322 1 1111122222211  13689999996544432200


Q ss_pred             C-------------------CCCCCCC-ccceeeeecccccCCCeEEEeCCH-----HHHHHHHHHHhcCCceEEE-ec-
Q 017068          303 G-------------------SNKNSCS-LVDLMVEMDRMLRPEGTVVVRDSP-----EVIDKVSRIANTVRWTAAV-HD-  355 (378)
Q Consensus       303 ~-------------------~~~~~c~-~~~~l~EmDRiLRPgG~~ii~d~~-----~~~~~~~~~~~~l~W~~~~-~~-  355 (378)
                      .                   ....+-+ ...++..+-|+|+|||.+++--+.     +..+++.+.+..-++.... .. 
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~~~i~~l~~  194 (421)
T 2ih2_A          115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTSVYYLGE  194 (421)
T ss_dssp             TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEEEEEEEES
T ss_pred             cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCCeEEEECCC
Confidence            0                   0000011 114566788999999998775332     2446677765555662222 11 


Q ss_pred             CCCCCCCCeEEEEEEec
Q 017068          356 KEPGSNGREKILVATKS  372 (378)
Q Consensus       356 ~~~~~~~~e~~l~~~K~  372 (378)
                      .-.+....--+++++|.
T Consensus       195 ~F~~~~~~~~il~~~k~  211 (421)
T 2ih2_A          195 VFPQKKVSAVVIRFQKS  211 (421)
T ss_dssp             CSTTCCCCEEEEEEESS
T ss_pred             CCCCCCccEEEEEEEeC
Confidence            11222334556677763

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=96.52  E-value=0.00025  Score=73.74  Aligned_cols=75  Identities=12%  Similarity=0.067  Sum_probs=57.1

Q ss_pred             CeEEEecCCCCChHHHHHHHHH----cC-CCeEEEEcccCCC--CCCCCceeEEEecCccccccCCh-HHHHHHHhhccc
Q 017068            5 NILTLSFAPRDSHKAQIQFALE----RG-IPAFVAMLGTRRL--PFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLR   76 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~e----rg-~~~~~~v~dae~L--Pfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLk   76 (378)
                      +|+++|++     +.+|+.|+.    +| +++.+.+++++.|  ++++++||+|+|..+++|++++. -..+..+.+.|+
T Consensus        90 ~V~giD~~-----~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~  164 (569)
T 4azs_A           90 TIVGIDFQ-----QENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLA  164 (569)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHH
T ss_pred             EEEEECCC-----HHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchhcCCCHHHHHHHHHHHHHhc
Confidence            56777666     566766654    44 5688999999988  68899999999999999998764 244567888888


Q ss_pred             CCcEEEEE
Q 017068           77 PGGYLVIS   84 (378)
Q Consensus        77 PGG~lvis   84 (378)
                      ++|..++.
T Consensus       165 ~~~~~~~~  172 (569)
T 4azs_A          165 DVTQAVIL  172 (569)
T ss_dssp             HHSSEEEE
T ss_pred             cccceeeE
Confidence            88866553

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=96.49  E-value=0.0019  Score=61.64  Aligned_cols=76  Identities=11%  Similarity=0.069  Sum_probs=51.6

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC---------CCeEEEEcccCC-CCCCCCceeEEEecCccccccC-----ChHHHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTA-----YNATYLI   69 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg---------~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~-----~~~~~L~   69 (378)
                      .|+++++.     +.+++.|+++-         ..+.+..+|+.. ++..+++||+|++.. ..+|..     ....+++
T Consensus       116 ~v~~vDid-----~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~-~~~~~~~~~~l~~~~~l~  189 (296)
T 1inl_A          116 KAILCEVD-----GLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDS-TDPTAGQGGHLFTEEFYQ  189 (296)
T ss_dssp             EEEEEESC-----HHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC-----------CCSHHHHH
T ss_pred             EEEEEECC-----HHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEcC-CCcccCchhhhhHHHHHH
Confidence            45666555     68888888752         246777888654 555678999999753 223211     1138899


Q ss_pred             HHhhcccCCcEEEEEcC
Q 017068           70 EVDRLLRPGGYLVISGP   86 (378)
Q Consensus        70 Ev~RVLkPGG~lvis~p   86 (378)
                      ++.|+|||||.|++...
T Consensus       190 ~~~~~LkpgG~lv~~~~  206 (296)
T 1inl_A          190 ACYDALKEDGVFSAETE  206 (296)
T ss_dssp             HHHHHEEEEEEEEEECC
T ss_pred             HHHHhcCCCcEEEEEcc
Confidence            99999999999999754

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=96.48  E-value=0.001  Score=61.40  Aligned_cols=78  Identities=13%  Similarity=0.106  Sum_probs=54.5

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcCC--CeEEEEcccCCC-CCC-----CCceeEEEecCccccccCChHHHHHHHhhcc
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERGI--PAFVAMLGTRRL-PFP-----AFSFDIVHCSRCLIPFTAYNATYLIEVDRLL   75 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg~--~~~~~v~dae~L-Pfp-----d~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVL   75 (378)
                      -.|+++++.|.-...+. +.+.+.|+  .+.+..+|+... +..     +++||+|++...    ......+++++.|+|
T Consensus        86 ~~v~~iD~~~~~~~~a~-~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~----~~~~~~~l~~~~~~L  160 (242)
T 3r3h_A           86 GQVITCDINEGWTKHAH-PYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDAD----KTNYLNYYELALKLV  160 (242)
T ss_dssp             CEEEEEECCCSSCCCSH-HHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESC----GGGHHHHHHHHHHHE
T ss_pred             CEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCC----hHHhHHHHHHHHHhc
Confidence            46899999987655443 23334455  377888887543 332     589999998643    222337899999999


Q ss_pred             cCCcEEEEEcC
Q 017068           76 RPGGYLVISGP   86 (378)
Q Consensus        76 kPGG~lvis~p   86 (378)
                      ||||++++...
T Consensus       161 kpGG~lv~d~~  171 (242)
T 3r3h_A          161 TPKGLIAIDNI  171 (242)
T ss_dssp             EEEEEEEEECS
T ss_pred             CCCeEEEEECC
Confidence            99999998643

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=96.48  E-value=0.00063  Score=66.07  Aligned_cols=86  Identities=13%  Similarity=0.091  Sum_probs=55.8

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hcc---cccc-ccccccCCCCCCccccccccCcc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGL---IGVY-HDWCEPFSTYPRTYDLIHVSGIE  296 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGl---ig~~-~~w~~~f~typrtyDliH~~~~~  296 (378)
                      ..|||+|||+|+|+.. .....   .|+..|.+ ..+..+-+    .|+   +-++ .|..+ +   +.+||+|.++-..
T Consensus       197 ~~VLDlg~G~G~~~l~-a~~~~---~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~-~---~~~fD~Vi~dpP~  268 (336)
T 2yx1_A          197 DVVVDMFAGVGPFSIA-CKNAK---KIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVRE-V---DVKGNRVIMNLPK  268 (336)
T ss_dssp             CEEEETTCTTSHHHHH-TTTSS---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGG-C---CCCEEEEEECCTT
T ss_pred             CEEEEccCccCHHHHh-ccCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHH-h---cCCCcEEEECCcH
Confidence            5799999999999998 76554   45555654 55544433    243   2122 22222 2   2789999885221


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .             ...++-++-|+|+|||.+++.+
T Consensus       269 ~-------------~~~~l~~~~~~L~~gG~l~~~~  291 (336)
T 2yx1_A          269 F-------------AHKFIDKALDIVEEGGVIHYYT  291 (336)
T ss_dssp             T-------------GGGGHHHHHHHEEEEEEEEEEE
T ss_pred             h-------------HHHHHHHHHHHcCCCCEEEEEE
Confidence            1             1367888899999999998864

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=96.48  E-value=0.00026  Score=69.95  Aligned_cols=127  Identities=11%  Similarity=0.142  Sum_probs=69.0

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hccc---c-ccccccccCCCC---CCcccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLI---G-VYHDWCEPFSTY---PRTYDLIHVS  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGli---g-~~~~w~~~f~ty---prtyDliH~~  293 (378)
                      .+|||+|||+|+|+.++...+.  -.|+..|.+ ..+..+-+    .|+-   - +..|..+.++.+   +.+||+|.++
T Consensus       219 ~~VLDl~~G~G~~~~~la~~g~--~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d  296 (396)
T 2as0_A          219 DRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD  296 (396)
T ss_dssp             CEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CeEEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence            5899999999999999887632  134555544 44443332    2331   1 112222211111   4689999986


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-----HH-HHHHHHHHHhcCCceEEEe
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-----PE-VIDKVSRIANTVRWTAAVH  354 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-----~~-~~~~~~~~~~~l~W~~~~~  354 (378)
                      --.............-....++.++-|+|+|||.+++...     .+ ..+.+.+.+.....+....
T Consensus       297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i  363 (396)
T 2as0_A          297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKML  363 (396)
T ss_dssp             CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEES
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            3321100000000001234688899999999999988742     22 3444555555555555543

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=96.48  E-value=0.0015  Score=59.28  Aligned_cols=73  Identities=23%  Similarity=0.359  Sum_probs=51.3

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCC-CC--------------CCC--CceeEEEecCccccc
Q 017068            4 ENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRR-LP--------------FPA--FSFDIVHCSRCLIPF   60 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~-LP--------------fpd--~SFD~V~cs~~l~hw   60 (378)
                      ..|+++++.     +.+++.|+++    |..  +.+..+|+.. +|              |++  ++||+|++.....  
T Consensus        86 ~~v~~vD~~-----~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~--  158 (239)
T 2hnk_A           86 GKILCCDVS-----EEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE--  158 (239)
T ss_dssp             CEEEEEESC-----HHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG--
T ss_pred             CEEEEEECC-----HHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHH--
Confidence            346666555     5788888775    443  5677777533 22              555  8999999875432  


Q ss_pred             cCChHHHHHHHhhcccCCcEEEEEc
Q 017068           61 TAYNATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        61 ~~~~~~~L~Ev~RVLkPGG~lvis~   85 (378)
                       +. ..+++++.++|||||++++..
T Consensus       159 -~~-~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          159 -NY-PNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             -GH-HHHHHHHHHHEEEEEEEEEEC
T ss_pred             -HH-HHHHHHHHHHcCCCeEEEEEc
Confidence             22 388999999999999999975

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=96.46  E-value=0.0017  Score=59.19  Aligned_cols=73  Identities=21%  Similarity=0.232  Sum_probs=51.4

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccC----CCCCCC--CceeEEEecCccccccCChHHHHHHHh
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTR----RLPFPA--FSFDIVHCSRCLIPFTAYNATYLIEVD   72 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae----~LPfpd--~SFD~V~cs~~l~hw~~~~~~~L~Ev~   72 (378)
                      .|+++++.     +.+++.|+++    |.  .+.+..+++.    .+++++  ++||+|++....   .+. ..+++++.
T Consensus        99 ~v~~iD~~-----~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~---~~~-~~~l~~~~  169 (232)
T 3cbg_A           99 QIIACDQD-----PNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADK---RNY-PRYYEIGL  169 (232)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCG---GGH-HHHHHHHH
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCH---HHH-HHHHHHHH
Confidence            46666655     5778887764    44  3667777753    345555  899999976431   222 48899999


Q ss_pred             hcccCCcEEEEEcC
Q 017068           73 RLLRPGGYLVISGP   86 (378)
Q Consensus        73 RVLkPGG~lvis~p   86 (378)
                      |+|||||++++...
T Consensus       170 ~~LkpgG~lv~~~~  183 (232)
T 3cbg_A          170 NLLRRGGLMVIDNV  183 (232)
T ss_dssp             HTEEEEEEEEEECT
T ss_pred             HHcCCCeEEEEeCC
Confidence            99999999999654

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=96.43  E-value=0.00051  Score=68.07  Aligned_cols=123  Identities=13%  Similarity=0.142  Sum_probs=66.8

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hcccc-----ccccccccCCCC---CCccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLIG-----VYHDWCEPFSTY---PRTYDLIHV  292 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGlig-----~~~~w~~~f~ty---prtyDliH~  292 (378)
                      .+|||+|||+|+|+.++.....  -.|+-.|.+ ..+..+-+    .|+-+     +..|..+.++..   ..+||+|-+
T Consensus       214 ~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~  291 (385)
T 2b78_A          214 KTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII  291 (385)
T ss_dssp             CEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence            4799999999999998886432  134555544 45544333    23321     111221111111   248999988


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC------HHHHHHHHHHHhcCCce
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS------PEVIDKVSRIANTVRWT  350 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~------~~~~~~~~~~~~~l~W~  350 (378)
                      +--.............-.+..++-+.-|+|+|||.+++...      ....+.+++.++....+
T Consensus       292 DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~  355 (385)
T 2b78_A          292 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT  355 (385)
T ss_dssp             CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred             CCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCc
Confidence            63321100000000000112356667899999999999853      23555666777777776

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=96.42  E-value=0.0068  Score=59.56  Aligned_cols=92  Identities=12%  Similarity=0.044  Sum_probs=58.5

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCcccccc-------CChHHHHHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT-------AYNATYLIEV   71 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~-------~~~~~~L~Ev   71 (378)
                      .|+++++.     +.+++.|+++    |+  .+.+.++|+..+|+++++||+|+|+--+....       +.-..+++++
T Consensus       243 ~v~g~Dis-----~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l  317 (373)
T 3tm4_A          243 EIIGIEKY-----RKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNEL  317 (373)
T ss_dssp             CEEEEESC-----HHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHH
T ss_pred             eEEEEeCC-----HHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHH
Confidence            46666655     6888888775    55  57889999999999999999999964322111       1113688999


Q ss_pred             hhcccCCcEEEEEcCCCCCCccchHHHHHHHHHHHhceeee
Q 017068           72 DRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELI  112 (378)
Q Consensus        72 ~RVLkPGG~lvis~pp~~~~~~~~~w~~l~~l~~~lcw~~~  112 (378)
                      .|+| +|+.++++..          ...++.......|+..
T Consensus       318 ~r~l-~g~~~~i~~~----------~~~~~~~~~~~G~~~~  347 (373)
T 3tm4_A          318 AKVL-EKRGVFITTE----------KKAIEEAIAENGFEII  347 (373)
T ss_dssp             HHHE-EEEEEEEESC----------HHHHHHHHHHTTEEEE
T ss_pred             HHHc-CCeEEEEECC----------HHHHHHHHHHcCCEEE
Confidence            9999 3333444332          1234445555566543

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=96.40  E-value=0.0014  Score=62.06  Aligned_cols=64  Identities=14%  Similarity=0.180  Sum_probs=40.5

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc---ccc-cccccccCCCCCCccccccccC
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL---IGV-YHDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~-~~~w~~~f~typrtyDliH~~~  294 (378)
                      -.+|||+|||+|.++..|.+..-   .|+..|-. ..++.+-++    |+   +-+ ..|..+ ++ +| +||+|.++-
T Consensus        29 ~~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~-~~-~~-~fD~vv~nl  101 (285)
T 1zq9_A           29 TDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK-TD-LP-FFDTCVANL  101 (285)
T ss_dssp             TCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT-SC-CC-CCSEEEEEC
T ss_pred             CCEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceec-cc-ch-hhcEEEEec
Confidence            35899999999999999987654   55666655 666665554    22   111 222221 21 23 789998853

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=96.39  E-value=0.0016  Score=63.12  Aligned_cols=76  Identities=16%  Similarity=0.178  Sum_probs=53.0

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC---------CCeEEEEcccCC-CCCCCCceeEEEecCccccccCCh----HHHHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAYN----ATYLIE   70 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg---------~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~~----~~~L~E   70 (378)
                      .|+++++     ++.+++.|+++-         ..+.+..+|+.. ++..+++||+|++.. ..++....    ..++++
T Consensus       142 ~v~~vDi-----s~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~-~~p~~~~~~l~~~~~l~~  215 (321)
T 2pt6_A          142 NIDICEI-----DETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDS-SDPIGPAETLFNQNFYEK  215 (321)
T ss_dssp             EEEEEES-----CHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEEC-CCSSSGGGGGSSHHHHHH
T ss_pred             EEEEEEC-----CHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEECC-cCCCCcchhhhHHHHHHH
Confidence            3555554     468999998862         236677787654 444578999999854 22332111    488999


Q ss_pred             HhhcccCCcEEEEEcC
Q 017068           71 VDRLLRPGGYLVISGP   86 (378)
Q Consensus        71 v~RVLkPGG~lvis~p   86 (378)
                      +.|+|||||.+++...
T Consensus       216 ~~~~LkpgG~lv~~~~  231 (321)
T 2pt6_A          216 IYNALKPNGYCVAQCE  231 (321)
T ss_dssp             HHHHEEEEEEEEEEEC
T ss_pred             HHHhcCCCcEEEEEcC
Confidence            9999999999999654

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=96.38  E-value=0.0021  Score=62.10  Aligned_cols=149  Identities=9%  Similarity=0.038  Sum_probs=79.7

Q ss_pred             CCCeeEEEecCCcceeeeeeccCCCe----eEEEeccCCCC-cchHHHHh----hcc-cccc-ccccccCCCCCCccccc
Q 017068          222 TPAIRNIMDMNAFFGGFAAALTSDPV----WVMNVVPARKS-STLSVIYD----RGL-IGVY-HDWCEPFSTYPRTYDLI  290 (378)
Q Consensus       222 ~~~iR~vlDm~ag~g~faa~L~~~~v----wvmnv~p~~~~-~~l~~i~e----RGl-ig~~-~~w~~~f~typrtyDli  290 (378)
                      ...-.+|||.|||+|+|+.++.+.--    -..+|.-.|-. .++.++-.    +|+ +-++ .|.-+++  .+..||+|
T Consensus       128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~--~~~~fD~I  205 (344)
T 2f8l_A          128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL--LVDPVDVV  205 (344)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC--CCCCEEEE
T ss_pred             CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCcc--ccCCccEE
Confidence            34567899999999999887753210    01255555654 55554433    354 1111 2222211  23789999


Q ss_pred             cccCccccccCCC--------CCCCCCCcc-ceeeeecccccCCCeEEEeCC-----HHHHHHHHHHHhcCCceEEEe--
Q 017068          291 HVSGIESLIKNPG--------SNKNSCSLV-DLMVEMDRMLRPEGTVVVRDS-----PEVIDKVSRIANTVRWTAAVH--  354 (378)
Q Consensus       291 H~~~~~~~~~~~~--------~~~~~c~~~-~~l~EmDRiLRPgG~~ii~d~-----~~~~~~~~~~~~~l~W~~~~~--  354 (378)
                      -++--|..+....        .....-... .++.++-+.|+|||.+++--+     .+.-.++.+.+..-.|-..+.  
T Consensus       206 i~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~~~ii~l  285 (344)
T 2f8l_A          206 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKL  285 (344)
T ss_dssp             EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEEC
T ss_pred             EECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeEEEeeeC
Confidence            9998876552100        000000111 357788899999999877641     122355655544444432221  


Q ss_pred             --cCCCCCCCCeEEEEEEec
Q 017068          355 --DKEPGSNGREKILVATKS  372 (378)
Q Consensus       355 --~~~~~~~~~e~~l~~~K~  372 (378)
                        +.=.+.....-|++.+|+
T Consensus       286 p~~~F~~~~~~~~i~vl~k~  305 (344)
T 2f8l_A          286 PETLFKSEQARKSILILEKA  305 (344)
T ss_dssp             CGGGSCC-CCCEEEEEEEEC
T ss_pred             ChhhccCCCCceEEEEEECC
Confidence              111122345677777764

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=96.37  E-value=0.0027  Score=59.77  Aligned_cols=62  Identities=10%  Similarity=0.045  Sum_probs=47.1

Q ss_pred             CChHHHHHHHHHcC---------CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEc
Q 017068           15 DSHKAQIQFALERG---------IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        15 D~se~~vq~A~erg---------~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      |+++.+++.|+++-         ..+.+..+|+....   ++||+|++..     .++. .+++++.|+|||||.+++..
T Consensus       101 eid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~-----~dp~-~~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          101 QADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ-----EPDI-HRIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             CSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS-----CCCH-HHHHHHHTTEEEEEEEEEEE
T ss_pred             ECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC-----CChH-HHHHHHHHhcCCCcEEEEEc
Confidence            45578998887752         23567777876654   8899999852     3555 68999999999999999864

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=96.29  E-value=0.0028  Score=56.63  Aligned_cols=74  Identities=16%  Similarity=0.165  Sum_probs=50.8

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCC-C-CCC----CceeEEEecCccccccCChHHHHHHH
Q 017068            4 ENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRL-P-FPA----FSFDIVHCSRCLIPFTAYNATYLIEV   71 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~L-P-fpd----~SFD~V~cs~~l~hw~~~~~~~L~Ev   71 (378)
                      ..|+++++.|     .+++.|+++    |.  .+.+..+|+... + +++    ++||+|++...    ......+++++
T Consensus        95 ~~v~~vD~~~-----~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~----~~~~~~~l~~~  165 (229)
T 2avd_A           95 GRVVTCEVDA-----QPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD----KENCSAYYERC  165 (229)
T ss_dssp             CEEEEEESCS-----HHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC----STTHHHHHHHH
T ss_pred             CEEEEEECCH-----HHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC----HHHHHHHHHHH
Confidence            3577777765     667777664    44  467777776432 1 222    78999998543    22223889999


Q ss_pred             hhcccCCcEEEEEcC
Q 017068           72 DRLLRPGGYLVISGP   86 (378)
Q Consensus        72 ~RVLkPGG~lvis~p   86 (378)
                      .|+|||||.+++...
T Consensus       166 ~~~L~pgG~lv~~~~  180 (229)
T 2avd_A          166 LQLLRPGGILAVLRV  180 (229)
T ss_dssp             HHHEEEEEEEEEECC
T ss_pred             HHHcCCCeEEEEECC
Confidence            999999999999653

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=96.26  E-value=0.0006  Score=69.89  Aligned_cols=102  Identities=25%  Similarity=0.359  Sum_probs=58.7

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----cc--cccc-ccccccCCC-CCCcccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GL--IGVY-HDWCEPFST-YPRTYDLIHVS  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig~~-~~w~~~f~t-yprtyDliH~~  293 (378)
                      ..|||||||.|+++..|...   .-   .|+..|.+ ..+..+-++    |+  +-+. .|-. .++. .+.+||.|-++
T Consensus       119 ~~VLDl~aGpG~kt~~lA~~~~~~g---~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~-~~~~~~~~~fD~Il~D  194 (479)
T 2frx_A          119 QRVMDVAAAPGSKTTQISARMNNEG---AILANEFSASRVKVLHANISRCGISNVALTHFDGR-VFGAAVPEMFDAILLD  194 (479)
T ss_dssp             SEEEESSCTTSHHHHHHHHHTTTCS---EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCST-THHHHSTTCEEEEEEE
T ss_pred             CEEEEeCCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHH-HhhhhccccCCEEEEC
Confidence            47999999999999887642   22   34666765 666555444    54  2122 2222 1222 35789999874


Q ss_pred             Cccc---cc-cCCCCCCCC-------C--CccceeeeecccccCCCeEEEe
Q 017068          294 GIES---LI-KNPGSNKNS-------C--SLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       294 ~~~~---~~-~~~~~~~~~-------c--~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      --.|   .+ ++++.....       |  .-..+|-++-|+|||||.+|++
T Consensus       195 ~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~Lvys  245 (479)
T 2frx_A          195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYS  245 (479)
T ss_dssp             CCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            2111   11 111110000       0  0125788888999999999997

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=96.25  E-value=0.002  Score=60.21  Aligned_cols=138  Identities=14%  Similarity=0.147  Sum_probs=87.9

Q ss_pred             HhhhhcCCCCeeEEEecCCcceeeeeeccCCC-eeEEEeccCCCC-cchHHHHh----hcccc----ccccccccCCCCC
Q 017068          215 TLNVKLGTPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYD----RGLIG----VYHDWCEPFSTYP  284 (378)
Q Consensus       215 ~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~-~~l~~i~e----RGlig----~~~~w~~~f~typ  284 (378)
                      .+...+..|  -.|+|+|||+|-++.+|.... ..  .|+..|-. ..+..+-+    .|+-.    ...|.-+.++  |
T Consensus        14 ~i~~~v~~g--~~VlDIGtGsG~l~i~la~~~~~~--~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~--~   87 (230)
T 3lec_A           14 KVANYVPKG--ARLLDVGSDHAYLPIFLLQMGYCD--FAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFE--E   87 (230)
T ss_dssp             HHHTTSCTT--EEEEEETCSTTHHHHHHHHTTCEE--EEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC--G
T ss_pred             HHHHhCCCC--CEEEEECCchHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccc--c
Confidence            344456666  579999999999999998653 21  35666654 55544443    35421    2344444442  3


Q ss_pred             C-ccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEec--CCCCCC
Q 017068          285 R-TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHD--KEPGSN  361 (378)
Q Consensus       285 r-tyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~~--~~~~~~  361 (378)
                      . .||+|-.++.-..           .|..+|-+.-+.|.|+|++|++...+ .+.+.+.+...-|.+....  .|++  
T Consensus        88 ~~~~D~IviaGmGg~-----------lI~~IL~~~~~~l~~~~~lIlqp~~~-~~~lr~~L~~~Gf~i~~E~lv~e~~--  153 (230)
T 3lec_A           88 ADNIDTITICGMGGR-----------LIADILNNDIDKLQHVKTLVLQPNNR-EDDLRKWLAANDFEIVAEDILTEND--  153 (230)
T ss_dssp             GGCCCEEEEEEECHH-----------HHHHHHHHTGGGGTTCCEEEEEESSC-HHHHHHHHHHTTEEEEEEEEEEC----
T ss_pred             ccccCEEEEeCCchH-----------HHHHHHHHHHHHhCcCCEEEEECCCC-hHHHHHHHHHCCCEEEEEEEEEECC--
Confidence            3 6898775444332           23567778888899999999998643 7788888888899987532  1221  


Q ss_pred             CCeEEEEEEec
Q 017068          362 GREKILVATKS  372 (378)
Q Consensus       362 ~~e~~l~~~K~  372 (378)
                      .--.|+.+.+.
T Consensus       154 ~~Yeii~~~~~  164 (230)
T 3lec_A          154 KRYEILVVKHG  164 (230)
T ss_dssp             CEEEEEEEEEC
T ss_pred             EEEEEEEEEeC
Confidence            23556776653

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=96.20  E-value=0.0018  Score=57.71  Aligned_cols=73  Identities=15%  Similarity=0.121  Sum_probs=50.4

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCC-C-CC---CCceeEEEecCccccccCChHHHHHHHhh
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRL-P-FP---AFSFDIVHCSRCLIPFTAYNATYLIEVDR   73 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~L-P-fp---d~SFD~V~cs~~l~hw~~~~~~~L~Ev~R   73 (378)
                      .|+++++.     +.+++.|+++    |.  .+.+..+|+... + ++   .++||+|++....   ... ..+++++.|
T Consensus        85 ~v~~vD~~-----~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~---~~~-~~~l~~~~~  155 (223)
T 3duw_A           85 RVVTLEAS-----EKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADK---QNN-PAYFEWALK  155 (223)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCG---GGH-HHHHHHHHH
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCc---HHH-HHHHHHHHH
Confidence            46666655     5777777764    44  367788886432 2 22   2679999986532   222 388999999


Q ss_pred             cccCCcEEEEEcC
Q 017068           74 LLRPGGYLVISGP   86 (378)
Q Consensus        74 VLkPGG~lvis~p   86 (378)
                      +|||||++++...
T Consensus       156 ~L~pgG~lv~~~~  168 (223)
T 3duw_A          156 LSRPGTVIIGDNV  168 (223)
T ss_dssp             TCCTTCEEEEESC
T ss_pred             hcCCCcEEEEeCC
Confidence            9999999998765

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=96.20  E-value=0.0025  Score=60.05  Aligned_cols=121  Identities=8%  Similarity=0.102  Sum_probs=80.0

Q ss_pred             HhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cccc----ccccccccCCCCCC
Q 017068          215 TLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG----VYHDWCEPFSTYPR  285 (378)
Q Consensus       215 ~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig----~~~~w~~~f~typr  285 (378)
                      .+...+..|  -.|+|+|||+|-++.+|....- .-.|+..|-. ..+..+-++    |+-.    ...|.-+.++  |.
T Consensus        14 ~i~~~v~~g--~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~--~~   88 (244)
T 3gnl_A           14 KVASYITKN--ERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE--KK   88 (244)
T ss_dssp             HHHTTCCSS--EEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC--GG
T ss_pred             HHHHhCCCC--CEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccC--cc
Confidence            344556666  4799999999999999976531 1135666654 566555544    6522    2344444442  34


Q ss_pred             -ccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEE
Q 017068          286 -TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAA  352 (378)
Q Consensus       286 -tyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~  352 (378)
                       .||+|-..+.-..           .|..+|-+.-+.|.|+|++|++... -...+++.+...-|.+.
T Consensus        89 ~~~D~IviagmGg~-----------lI~~IL~~~~~~L~~~~~lIlq~~~-~~~~lr~~L~~~Gf~i~  144 (244)
T 3gnl_A           89 DAIDTIVIAGMGGT-----------LIRTILEEGAAKLAGVTKLILQPNI-AAWQLREWSEQNNWLIT  144 (244)
T ss_dssp             GCCCEEEEEEECHH-----------HHHHHHHHTGGGGTTCCEEEEEESS-CHHHHHHHHHHHTEEEE
T ss_pred             ccccEEEEeCCchH-----------HHHHHHHHHHHHhCCCCEEEEEcCC-ChHHHHHHHHHCCCEEE
Confidence             5998775443322           2356788888999999999999754 46677787888889874

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=96.16  E-value=0.0032  Score=60.27  Aligned_cols=134  Identities=14%  Similarity=0.160  Sum_probs=80.1

Q ss_pred             CccccccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCC-eeEEEeccCCCC-cchHHHH----hh
Q 017068          194 GYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIY----DR  267 (378)
Q Consensus       194 ~~~~F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~-~~l~~i~----eR  267 (378)
                      +...|..+....+.++..+       ++.|  ..||||+||+|+||-.++.++ .   .|...|.. ..+..+-    ..
T Consensus       104 ~k~~f~~~~~~er~ri~~~-------~~~g--~~VlD~~aG~G~~~i~~a~~g~~---~V~avD~np~a~~~~~~N~~~N  171 (278)
T 3k6r_A          104 AKIMFSPANVKERVRMAKV-------AKPD--ELVVDMFAGIGHLSLPIAVYGKA---KVIAIEKDPYTFKFLVENIHLN  171 (278)
T ss_dssp             TTSCCCGGGHHHHHHHHHH-------CCTT--CEEEETTCTTTTTTHHHHHHTCC---EEEEECCCHHHHHHHHHHHHHT
T ss_pred             cceEEcCCcHHHHHHHHHh-------cCCC--CEEEEecCcCcHHHHHHHHhcCC---eEEEEECCHHHHHHHHHHHHHc
Confidence            4456888888887776443       4445  479999999999987665443 2   33455543 4443332    23


Q ss_pred             cccc---ccc-cccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-------HHH
Q 017068          268 GLIG---VYH-DWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-------PEV  336 (378)
Q Consensus       268 Glig---~~~-~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-------~~~  336 (378)
                      |+-+   +++ |-.+ |+. ...||.|..+-..+.             ...|-+.=++|+|||++.+-+.       .+.
T Consensus       172 ~v~~~v~~~~~D~~~-~~~-~~~~D~Vi~~~p~~~-------------~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~  236 (278)
T 3k6r_A          172 KVEDRMSAYNMDNRD-FPG-ENIADRILMGYVVRT-------------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREP  236 (278)
T ss_dssp             TCTTTEEEECSCTTT-CCC-CSCEEEEEECCCSSG-------------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTT
T ss_pred             CCCCcEEEEeCcHHH-hcc-ccCCCEEEECCCCcH-------------HHHHHHHHHHcCCCCEEEEEeeecccccchhH
Confidence            4422   222 2221 221 257887766433221             2344455589999999877431       235


Q ss_pred             HHHHHHHHhcCCceEEEe
Q 017068          337 IDKVSRIANTVRWTAAVH  354 (378)
Q Consensus       337 ~~~~~~~~~~l~W~~~~~  354 (378)
                      .+.++++++...+++...
T Consensus       237 ~e~i~~~~~~~g~~v~~~  254 (278)
T 3k6r_A          237 FETFKRITKEYGYDVEKL  254 (278)
T ss_dssp             HHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHcCCcEEEE
Confidence            677888888888887653

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=96.13  E-value=0.00066  Score=65.26  Aligned_cols=136  Identities=13%  Similarity=0.069  Sum_probs=0.0

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCCcchHHHHhhc-----cccccccccccCCCCCCccccccccC---ccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRG-----LIGVYHDWCEPFSTYPRTYDLIHVSG---IES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~~~l~~i~eRG-----lig~~~~w~~~f~typrtyDliH~~~---~~~  297 (378)
                      .+|||+|||.|||.-..+.+.- +-++...+-...+.+..-.+     -+-.+..=.+-+..-+..||+|-|+.   .=.
T Consensus        76 ~~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apnsG~  154 (277)
T 3evf_A           76 GRVIDLGCGRGGWCYYAAAQKE-VSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSSS  154 (277)
T ss_dssp             EEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCCCSC
T ss_pred             CEEEEecCCCCHHHHHHHHhcC-CCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccCcCc


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCC-CeEEEe-------CCHHHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEEE
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPE-GTVVVR-------DSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVA  369 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPg-G~~ii~-------d~~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~  369 (378)
                      .+.      +.-....+|-.+-++|+|| |.||+.       +..+.+..++...++.+...- .....   +.|.++||
T Consensus       155 ~~~------D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F~~V~~~KP-aSR~~---S~E~Y~V~  224 (277)
T 3evf_A          155 SVT------EGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNP-LSRNS---THEMYYVS  224 (277)
T ss_dssp             HHH------HHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEEECCT-TSCTT---CCCEEEES
T ss_pred             hHH------HHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhcCCEEEEeC-CCCCC---CCceEEEE


Q ss_pred             Eec
Q 017068          370 TKS  372 (378)
Q Consensus       370 ~K~  372 (378)
                      ..+
T Consensus       225 ~~r  227 (277)
T 3evf_A          225 GAR  227 (277)
T ss_dssp             SCC
T ss_pred             ecC

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=96.13  E-value=0.0099  Score=57.11  Aligned_cols=145  Identities=11%  Similarity=0.030  Sum_probs=0.0

Q ss_pred             HHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhh----ccccccccccccCC
Q 017068          209 VAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFS  281 (378)
Q Consensus       209 v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~w~~~f~  281 (378)
                      .+.....+-..+  +...+|||+|||+|-||.++...  ..   .+...|-. ..+.++-++    |+-+.+----..-.
T Consensus       119 lD~fY~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~p~a---~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~  193 (281)
T 3lcv_B          119 LDEFYRELFRHL--PRPNTLRDLACGLNPLAAPWMGLPAET---VYIASDIDARLVGFVDEALTRLNVPHRTNVADLLED  193 (281)
T ss_dssp             HHHHHHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCCTTC---EEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTS
T ss_pred             HHHHHHHHHhcc--CCCceeeeeccCccHHHHHHHhhCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeeccc


Q ss_pred             CCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-----------HHHHHHHHHHHhcCCce
Q 017068          282 TYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-----------PEVIDKVSRIANTVRWT  350 (378)
Q Consensus       282 typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-----------~~~~~~~~~~~~~l~W~  350 (378)
                      +.|-.||++=+.-..-.+.   .+..    +..+ ++=..|+|+|.||-.++           ..+.+..++.+..--|.
T Consensus       194 ~p~~~~DvaL~lkti~~Le---~q~k----g~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~  265 (281)
T 3lcv_B          194 RLDEPADVTLLLKTLPCLE---TQQR----GSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCR  265 (281)
T ss_dssp             CCCSCCSEEEETTCHHHHH---HHST----THHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCcchHHHHHHHHHhh---hhhh----HHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCc


Q ss_pred             EEEecCCCCCCCCeEEEEEEe
Q 017068          351 AAVHDKEPGSNGREKILVATK  371 (378)
Q Consensus       351 ~~~~~~~~~~~~~e~~l~~~K  371 (378)
                      +.....     +.|-+.+.+|
T Consensus       266 ~~~~~~-----~nEl~y~i~k  281 (281)
T 3lcv_B          266 IQRLEI-----GNELIYVIQK  281 (281)
T ss_dssp             EEEEEE-----TTEEEEEEC-
T ss_pred             eeeeee-----cCeeEEEecC

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=96.12  E-value=0.0022  Score=61.57  Aligned_cols=117  Identities=16%  Similarity=0.181  Sum_probs=63.4

Q ss_pred             chHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCccee--eeeecc---CCCeeEEEeccCCCC-cchHHHHhhcc-----
Q 017068          201 DSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGG--FAAALT---SDPVWVMNVVPARKS-STLSVIYDRGL-----  269 (378)
Q Consensus       201 d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~--faa~L~---~~~vwvmnv~p~~~~-~~l~~i~eRGl-----  269 (378)
                      -+..|..++-.|..      ....+|.+||+|||.++  +...++   ....   .|+-+|.+ .+|..+-+|--     
T Consensus        61 ~nr~fl~rav~~l~------~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~a---rVv~VD~sp~mLa~Ar~~l~~~~~~  131 (277)
T 3giw_A           61 ANRDWMNRAVAHLA------KEAGIRQFLDIGTGIPTSPNLHEIAQSVAPES---RVVYVDNDPIVLTLSQGLLASTPEG  131 (277)
T ss_dssp             HHHHHHHHHHHHHH------HTSCCCEEEEESCCSCCSSCHHHHHHHHCTTC---EEEEEECCHHHHHTTHHHHCCCSSS
T ss_pred             HHHHHHHHHHHHhc------cccCCCEEEEeCCCCCcccHHHHHHHHHCCCC---EEEEEeCChHHHHHHHHHhccCCCC
Confidence            34455555444332      13469999999999843  333322   1233   45777765 66654433210     


Q ss_pred             -cc-cccccccc---C--CCCCCcccc-----ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          270 -IG-VYHDWCEP---F--STYPRTYDL-----IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       270 -ig-~~~~w~~~---f--~typrtyDl-----iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                       +- +..|.++.   +  +.-.++||+     |-+..+|..+.      +.-....+|-++-|.|+|||++++++
T Consensus       132 ~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~------d~~~p~~~l~~l~~~L~PGG~Lvls~  200 (277)
T 3giw_A          132 RTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVL------DEDDAVGIVRRLLEPLPSGSYLAMSI  200 (277)
T ss_dssp             EEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSC------GGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred             cEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCC------chhhHHHHHHHHHHhCCCCcEEEEEe
Confidence             11 22233321   0  000145663     55666666554      11112358889999999999999983

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=96.11  E-value=0.00081  Score=68.39  Aligned_cols=94  Identities=11%  Similarity=0.072  Sum_probs=55.1

Q ss_pred             eEEEecCCcceeeeeeccC-CCeeEEEeccCCCC-cchHHHHh-----------hcc----ccc-cccccccCCCCC---
Q 017068          226 RNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKS-STLSVIYD-----------RGL----IGV-YHDWCEPFSTYP---  284 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~-~~vwvmnv~p~~~~-~~l~~i~e-----------RGl----ig~-~~~w~~~f~typ---  284 (378)
                      -+|||+|||+|.++..+.. .+.-  .|+-.|-+ ..+.++-+           .|+    |-+ ..|-.+.  +|+   
T Consensus       175 d~VLDLGCGtG~l~l~lA~~~g~~--kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~l--p~~d~~  250 (438)
T 3uwp_A          175 DLFVDLGSGVGQVVLQVAAATNCK--HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE--EWRERI  250 (438)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCCCS--EEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSH--HHHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCC--cccccc
Confidence            4699999999999876642 2321  23455544 45544432           233    111 2232221  122   


Q ss_pred             CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          285 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       285 rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      ..||+|-+...+- .         -++...|.||-|+|||||.+|+.+.
T Consensus       251 ~~aDVVf~Nn~~F-~---------pdl~~aL~Ei~RvLKPGGrIVssE~  289 (438)
T 3uwp_A          251 ANTSVIFVNNFAF-G---------PEVDHQLKERFANMKEGGRIVSSKP  289 (438)
T ss_dssp             HTCSEEEECCTTC-C---------HHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred             CCccEEEEccccc-C---------chHHHHHHHHHHcCCCCcEEEEeec
Confidence            2688887753321 1         1235678899999999999999864

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=96.11  E-value=0.0024  Score=62.10  Aligned_cols=73  Identities=15%  Similarity=0.113  Sum_probs=49.0

Q ss_pred             CCChHHHHHHHHHc----CCC---eEEEEcccCCCCC----CCCceeEEEecCc---------cccccCChHHHHHHHhh
Q 017068           14 RDSHKAQIQFALER----GIP---AFVAMLGTRRLPF----PAFSFDIVHCSRC---------LIPFTAYNATYLIEVDR   73 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~~---~~~~v~dae~LPf----pd~SFD~V~cs~~---------l~hw~~~~~~~L~Ev~R   73 (378)
                      .|+|+.+++.|+++    ++.   +.+..+|+..+..    .+++||+|++.--         +.++.+....+++++.|
T Consensus       181 VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~  260 (332)
T 2igt_A          181 VDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICRE  260 (332)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHH
Confidence            34557888888775    443   6788888765431    1678999998421         11122222488999999


Q ss_pred             cccCCcEEEEEcC
Q 017068           74 LLRPGGYLVISGP   86 (378)
Q Consensus        74 VLkPGG~lvis~p   86 (378)
                      +|||||+|++...
T Consensus       261 ~LkpgG~lli~~~  273 (332)
T 2igt_A          261 ILSPKALGLVLTA  273 (332)
T ss_dssp             TBCTTCCEEEEEE
T ss_pred             hcCcCcEEEEEEC
Confidence            9999999877654

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=96.10  E-value=0.0076  Score=59.76  Aligned_cols=71  Identities=17%  Similarity=0.156  Sum_probs=43.5

Q ss_pred             CCeeEEEecCCcceeeeeeccCC---------------CeeEEEeccCCCC-cchHHHHhh--------------ccccc
Q 017068          223 PAIRNIMDMNAFFGGFAAALTSD---------------PVWVMNVVPARKS-STLSVIYDR--------------GLIGV  272 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~faa~L~~~---------------~vwvmnv~p~~~~-~~l~~i~eR--------------Glig~  272 (378)
                      .+.=.|+|+||++|..+-.+++.               +.--..|.-.|-| |...-++.+              |..|.
T Consensus        50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS  129 (359)
T 1m6e_X           50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS  129 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred             CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence            34556899999999988776654               2223344444544 444444333              33455


Q ss_pred             cccccccCCCCCCccccccccCccc
Q 017068          273 YHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       273 ~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      +++..  ||  ++|+|++|++.++.
T Consensus       130 Fy~rl--fp--~~S~d~v~Ss~aLH  150 (359)
T 1m6e_X          130 FYGRL--FP--RNTLHFIHSSYSLM  150 (359)
T ss_dssp             SSSCC--SC--TTCBSCEEEESCTT
T ss_pred             hhhcc--CC--CCceEEEEehhhhh
Confidence            54322  32  38999999998876

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=96.09  E-value=0.005  Score=58.41  Aligned_cols=133  Identities=11%  Similarity=-0.014  Sum_probs=83.0

Q ss_pred             CCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-cccccc--cccc-CCCCCCccccccccCccc
Q 017068          223 PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-IGVYHD--WCEP-FSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig~~~~--w~~~-f~typrtyDliH~~~~~~  297 (378)
                      +.-++|||+|||+|-|+.++. ...   .+...|-. .++.++-++.- .|.-++  .|.- -.+.|-+||++-+.-...
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~~~---~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh  179 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-GIA---SVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLP  179 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-TCS---EEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred             CCCCeEEEecCCccHHHHHhc-cCC---eEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHH
Confidence            668899999999999999877 333   34566655 67766666521 122111  1222 245567999996652222


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-----------HHHHHHHHHHHhcCCceEEEecCCCCCCCCeEE
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-----------PEVIDKVSRIANTVRWTAAVHDKEPGSNGREKI  366 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-----------~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~  366 (378)
                      .+.   .+...     .++++=.-|+|+|.||-.++           ..+....++.++.--|.+.....     +.|-+
T Consensus       180 ~LE---~q~~~-----~~~~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~~~~-----~nEl~  246 (253)
T 3frh_A          180 LLE---REQAG-----SAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKKTI-----GTELI  246 (253)
T ss_dssp             HHH---HHSTT-----HHHHHHHHCBCSEEEEEEECC-----------CHHHHHHHHSCTTEEEEEEEEE-----TTEEE
T ss_pred             Hhh---hhchh-----hHHHHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHHhhccchhhhheec-----CceEE
Confidence            221   01111     12233338999999988773           23566778888888999887654     46888


Q ss_pred             EEEEec
Q 017068          367 LVATKS  372 (378)
Q Consensus       367 l~~~K~  372 (378)
                      .+.+|.
T Consensus       247 ~~i~~~  252 (253)
T 3frh_A          247 YLIKKN  252 (253)
T ss_dssp             EEEEEC
T ss_pred             EEEecC
Confidence            888874

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=96.06  E-value=0.014  Score=58.06  Aligned_cols=76  Identities=13%  Similarity=0.173  Sum_probs=53.4

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcCCC--eEEEEcccCCCCCCCCceeEEEe---cCccccccCChHHHHHHHhhcccCC
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERGIP--AFVAMLGTRRLPFPAFSFDIVHC---SRCLIPFTAYNATYLIEVDRLLRPG   78 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg~~--~~~~v~dae~LPfpd~SFD~V~c---s~~l~hw~~~~~~~L~Ev~RVLkPG   78 (378)
                      +.|+|++..+  ..+...+.++++|..  +.+..++++.+.+| +.||+|+|   ..++.+ ...-..++....|.||||
T Consensus       107 ~~V~ave~s~--~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~l~~-e~~l~~~l~a~~r~Lkp~  182 (376)
T 4hc4_A          107 RRVYAVEASA--IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYGLLH-ESMLSSVLHARTKWLKEG  182 (376)
T ss_dssp             SEEEEEECST--THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTTBTT-TCSHHHHHHHHHHHEEEE
T ss_pred             CEEEEEeChH--HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccccccc-cchhhhHHHHHHhhCCCC
Confidence            4588888764  344444555566654  67788899999888 57999998   333333 222237888889999999


Q ss_pred             cEEEE
Q 017068           79 GYLVI   83 (378)
Q Consensus        79 G~lvi   83 (378)
                      |.++-
T Consensus       183 G~~iP  187 (376)
T 4hc4_A          183 GLLLP  187 (376)
T ss_dssp             EEEES
T ss_pred             ceECC
Confidence            99874

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=96.03  E-value=0.0051  Score=59.18  Aligned_cols=54  Identities=11%  Similarity=-0.028  Sum_probs=38.1

Q ss_pred             eEEEEc-ccCCCCCCCCceeEEEecCccc--cc-cCChH--HHHHHHhhcccCCcEEEEEcC
Q 017068           31 AFVAML-GTRRLPFPAFSFDIVHCSRCLI--PF-TAYNA--TYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        31 ~~~~v~-dae~LPfpd~SFD~V~cs~~l~--hw-~~~~~--~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +.+..+ |+..+  ++++||+|+|..+..  |+ .+...  .+|.++.|+|||||.|++...
T Consensus       133 v~~~~~~D~~~l--~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~  192 (305)
T 2p41_A          133 VRLQSGVDVFFI--PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL  192 (305)
T ss_dssp             EEEECSCCTTTS--CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred             eEEEeccccccC--CcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            566666 66655  467999999976542  22 22221  478999999999999998654

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=96.00  E-value=0.0019  Score=64.67  Aligned_cols=47  Identities=19%  Similarity=0.209  Sum_probs=35.4

Q ss_pred             CCCCCCCCceeEEEecCccccccCChHHH---------------------------------------HHHHhhcccCCc
Q 017068           39 RRLPFPAFSFDIVHCSRCLIPFTAYNATY---------------------------------------LIEVDRLLRPGG   79 (378)
Q Consensus        39 e~LPfpd~SFD~V~cs~~l~hw~~~~~~~---------------------------------------L~Ev~RVLkPGG   79 (378)
                      ..-.||++|||+|+++.++ ||.......                                       |+-..|.|+|||
T Consensus       141 y~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG  219 (384)
T 2efj_A          141 YSRLFPEESMHFLHSCYCL-HWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRG  219 (384)
T ss_dssp             TSCCSCTTCEEEEEEESCT-TBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred             hhccCCCCceEEEEeccee-eecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            3467999999999999987 785432111                                       344489999999


Q ss_pred             EEEEEcC
Q 017068           80 YLVISGP   86 (378)
Q Consensus        80 ~lvis~p   86 (378)
                      .++++..
T Consensus       220 ~mvl~~~  226 (384)
T 2efj_A          220 RMLLTFI  226 (384)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEe
Confidence            9999865

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=95.90  E-value=0.0041  Score=58.71  Aligned_cols=74  Identities=12%  Similarity=0.105  Sum_probs=50.3

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC---------------CCeEEEEcccCC-CCCCCCceeEEEecCccccccCC----h
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG---------------IPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAY----N   64 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg---------------~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~----~   64 (378)
                      .|+++++.     +.+++.|+++-               ..+.+..+|+.. ++. +++||+|++... .++...    .
T Consensus       100 ~v~~vDid-----~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~fD~Ii~d~~-~~~~~~~~l~~  172 (281)
T 1mjf_A          100 EVIMVEID-----EDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFDVIIADST-DPVGPAKVLFS  172 (281)
T ss_dssp             EEEEEESC-----HHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEEEEEEECC-CCC-----TTS
T ss_pred             EEEEEECC-----HHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCeeEEEECCC-CCCCcchhhhH
Confidence            45555555     68888888752               235677777643 333 688999998643 333221    1


Q ss_pred             HHHHHHHhhcccCCcEEEEEc
Q 017068           65 ATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        65 ~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      ..+++++.|+|||||.+++..
T Consensus       173 ~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          173 EEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCCcEEEEEc
Confidence            378999999999999999864

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=95.89  E-value=0.03  Score=56.13  Aligned_cols=130  Identities=17%  Similarity=0.253  Sum_probs=77.1

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hcc--cc-ccccccccCCC--C-CCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGL--IG-VYHDWCEPFST--Y-PRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGl--ig-~~~~w~~~f~t--y-prtyDliH~~~  294 (378)
                      .+|||+|||+|.|+.+|.....   .|+-.|.+ ..+..+-+    .|+  +- ...|..+.++.  + ..+||+|-++-
T Consensus       288 ~~VLDlgcG~G~~~~~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dP  364 (433)
T 1uwv_A          288 DRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP  364 (433)
T ss_dssp             CEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECC
T ss_pred             CEEEECCCCCCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECC
Confidence            4799999999999999988754   55666665 56655443    333  21 23345444432  2 25899988742


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEE---EecCCCCCCCCeEEEEEEe
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAA---VHDKEPGSNGREKILVATK  371 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~---~~~~~~~~~~~e~~l~~~K  371 (378)
                      -.          ..|  ..++-.+- -++|++.++++-...++.+--.++..--|.+.   ..|.=+.+..=|-+.+-+|
T Consensus       365 Pr----------~g~--~~~~~~l~-~~~p~~ivyvsc~p~tlard~~~l~~~Gy~~~~~~~~d~Fp~t~HvE~v~ll~r  431 (433)
T 1uwv_A          365 AR----------AGA--AGVMQQII-KLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR  431 (433)
T ss_dssp             CT----------TCC--HHHHHHHH-HHCCSEEEEEESCHHHHHHHHHHHHHTTCEEEEEEEECCSTTSSCCEEEEEEEC
T ss_pred             CC----------ccH--HHHHHHHH-hcCCCeEEEEECChHHHHhhHHHHHHCCcEEEEEEEeccCCCCCeEEEEEEEEE
Confidence            11          122  23332222 26899999999888776655444444456653   3444333334466665554

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=95.88  E-value=0.0078  Score=53.52  Aligned_cols=71  Identities=13%  Similarity=0.048  Sum_probs=47.0

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCC-----------CCceeEEEecCccc----cccCC------
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFP-----------AFSFDIVHCSRCLI----PFTAY------   63 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfp-----------d~SFD~V~cs~~l~----hw~~~------   63 (378)
                      .|+++++.|...           ...+.+..+|+...+..           .++||+|+|.....    +..+.      
T Consensus        49 ~V~gvD~~~~~~-----------~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l  117 (191)
T 3dou_A           49 KIISIDLQEMEE-----------IAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQI  117 (191)
T ss_dssp             EEEEEESSCCCC-----------CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHH
T ss_pred             cEEEEecccccc-----------CCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHH
Confidence            588899887521           12367788888776521           14999999854211    11111      


Q ss_pred             hHHHHHHHhhcccCCcEEEEEcC
Q 017068           64 NATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        64 ~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      ...++.++.|+|||||.|++...
T Consensus       118 ~~~~l~~a~~~LkpGG~lv~k~~  140 (191)
T 3dou_A          118 GQRVMEIAVRYLRNGGNVLLKQF  140 (191)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHccCCCEEEEEEc
Confidence            12678999999999999998653

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=95.87  E-value=0.0035  Score=63.20  Aligned_cols=104  Identities=19%  Similarity=0.219  Sum_probs=62.4

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc-cccc-ccccccCCCCCCccccccccCcccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IGVY-HDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig~~-~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      ..|||+|||+|.|+..|.....   .|+-.|.+ ..+..+-++    |+ +-.+ .|..+ +.  +.+||+|-++--.  
T Consensus       292 ~~VLDlgcG~G~~sl~la~~~~---~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~-~~--~~~fD~Vv~dPPr--  363 (425)
T 2jjq_A          292 EKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVEINNVDAEFEVASDRE-VS--VKGFDTVIVDPPR--  363 (425)
T ss_dssp             SEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTT-CC--CTTCSEEEECCCT--
T ss_pred             CEEEEeeccchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHH-cC--ccCCCEEEEcCCc--
Confidence            5899999999999999987654   55666655 555544332    43 2112 22222 21  2389998874221  


Q ss_pred             ccCCCCCCCCCCccc-eeeeecccccCCCeEEEeCCHHHHHH-HHHHHhcCCceEE
Q 017068          299 IKNPGSNKNSCSLVD-LMVEMDRMLRPEGTVVVRDSPEVIDK-VSRIANTVRWTAA  352 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~-~l~EmDRiLRPgG~~ii~d~~~~~~~-~~~~~~~l~W~~~  352 (378)
                                ..+.. ++-++ +.|+|||.++++-...++.+ ++.+.    |++.
T Consensus       364 ----------~g~~~~~~~~l-~~l~p~givyvsc~p~tlarDl~~l~----y~l~  404 (425)
T 2jjq_A          364 ----------AGLHPRLVKRL-NREKPGVIVYVSCNPETFARDVKMLD----YRID  404 (425)
T ss_dssp             ----------TCSCHHHHHHH-HHHCCSEEEEEESCHHHHHHHHHHSS----CCEE
T ss_pred             ----------cchHHHHHHHH-HhcCCCcEEEEECChHHHHhHHhhCe----EEEE
Confidence                      12222 33334 45999999999987765543 33332    7664

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=95.86  E-value=0.0044  Score=56.70  Aligned_cols=73  Identities=15%  Similarity=0.206  Sum_probs=50.8

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCC-CC-C-----CCCceeEEEecCccccccCChHHHHHH
Q 017068            4 ENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRR-LP-F-----PAFSFDIVHCSRCLIPFTAYNATYLIE   70 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~-LP-f-----pd~SFD~V~cs~~l~hw~~~~~~~L~E   70 (378)
                      ..|+++++.     +.+++.|+++    |+.  +.+..+|+.. ++ +     ++++||+|++..    +......++++
T Consensus        96 ~~v~~iD~~-----~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~----~~~~~~~~l~~  166 (237)
T 3c3y_A           96 GKITAIDFD-----REAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDA----DKPNYIKYHER  166 (237)
T ss_dssp             CEEEEEESC-----HHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECS----CGGGHHHHHHH
T ss_pred             CEEEEEECC-----HHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECC----chHHHHHHHHH
Confidence            346666655     5777777664    553  6677777643 23 2     368999999753    22233488999


Q ss_pred             HhhcccCCcEEEEEc
Q 017068           71 VDRLLRPGGYLVISG   85 (378)
Q Consensus        71 v~RVLkPGG~lvis~   85 (378)
                      +.|+|||||++++..
T Consensus       167 ~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          167 LMKLVKVGGIVAYDN  181 (237)
T ss_dssp             HHHHEEEEEEEEEEC
T ss_pred             HHHhcCCCeEEEEec
Confidence            999999999999864

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=95.86  E-value=0.00028  Score=75.56  Aligned_cols=107  Identities=18%  Similarity=0.233  Sum_probs=61.7

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cccc-----ccccccccCCCCCCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG-----VYHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig-----~~~~w~~~f~typrtyDliH~~~~  295 (378)
                      ..|||+|||+|+|+-+++...-  -.|+.+|.+ ..|..+-+.    |+-+     +-.|..+.++....+||+|-++--
T Consensus       541 ~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP  618 (703)
T 3v97_A          541 KDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP  618 (703)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred             CcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence            4799999999999988765432  135666665 666555443    3321     112222222223478999998643


Q ss_pred             -cccccCCC-CCCCCCCccceeeeecccccCCCeEEEeCCH
Q 017068          296 -ESLIKNPG-SNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP  334 (378)
Q Consensus       296 -~~~~~~~~-~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~  334 (378)
                       |+.-.... .....-....++-++-|+|+|||+++++...
T Consensus       619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence             32111000 0000012345688889999999999998643

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=95.85  E-value=0.0014  Score=67.21  Aligned_cols=102  Identities=15%  Similarity=0.251  Sum_probs=58.5

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----ccc-cc-cccccccCC-CCCCcccccccc-
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GLI-GV-YHDWCEPFS-TYPRTYDLIHVS-  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gli-g~-~~~w~~~f~-typrtyDliH~~-  293 (378)
                      ..|||||||.|+++.+|...   .-   .|+..|.+ ..+..+-++    |+- -+ ..|-.+ ++ ..+.+||+|-++ 
T Consensus       103 ~~VLDlgaGpG~kt~~LA~~~~~~g---~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~-l~~~~~~~FD~Il~D~  178 (464)
T 3m6w_A          103 ERVLDLAAAPGGKTTHLAARMGGKG---LLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRA-LAEAFGTYFHRVLLDA  178 (464)
T ss_dssp             CEEEESSCTTCHHHHHHHHHTTTCS---EEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHH-HHHHHCSCEEEEEEEC
T ss_pred             CEEEEEcCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHH-hhhhccccCCEEEECC
Confidence            47999999999999888632   22   24666765 666655443    442 11 122221 22 235789999853 


Q ss_pred             ---CccccccCCCCCC--CCCCc-------cceeeeecccccCCCeEEEe
Q 017068          294 ---GIESLIKNPGSNK--NSCSL-------VDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       294 ---~~~~~~~~~~~~~--~~c~~-------~~~l~EmDRiLRPgG~~ii~  331 (378)
                         +.-..-.+++...  ..-.+       ..+|-++-|+|||||.+|++
T Consensus       179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lvys  228 (464)
T 3m6w_A          179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYS  228 (464)
T ss_dssp             CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence               2211111111100  00001       45788899999999999996

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=95.73  E-value=0.013  Score=56.64  Aligned_cols=74  Identities=18%  Similarity=0.146  Sum_probs=54.0

Q ss_pred             CCCCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-----------------HHHHHH
Q 017068           12 APRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-----------------ATYLIE   70 (378)
Q Consensus        12 ap~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-----------------~~~L~E   70 (378)
                      ...|+++.+++.|+.+    |+.+.+..+|+.. +.+++.||+|+++--+.++...+                 ...+.+
T Consensus       163 ~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~-~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~  241 (344)
T 2f8l_A          163 SGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQ  241 (344)
T ss_dssp             EEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHHHHhCCCCceEEECCCCC-ccccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHH
Confidence            3344556788887774    6677888888755 45678899999986654543221                 147999


Q ss_pred             HhhcccCCcEEEEEcC
Q 017068           71 VDRLLRPGGYLVISGP   86 (378)
Q Consensus        71 v~RVLkPGG~lvis~p   86 (378)
                      +.+.|||||++++..|
T Consensus       242 ~~~~Lk~gG~~~~v~p  257 (344)
T 2f8l_A          242 GMRYTKPGGYLFFLVP  257 (344)
T ss_dssp             HHHTEEEEEEEEEEEE
T ss_pred             HHHHhCCCCEEEEEEC
Confidence            9999999999998876

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=95.56  E-value=0.0055  Score=65.58  Aligned_cols=77  Identities=17%  Similarity=0.273  Sum_probs=54.1

Q ss_pred             eEEEecCCCCChHHHHHHHHHc----CCC---eEEEEcccCC-CCCCCCceeEEEecCcc----------ccccCChHHH
Q 017068            6 ILTLSFAPRDSHKAQIQFALER----GIP---AFVAMLGTRR-LPFPAFSFDIVHCSRCL----------IPFTAYNATY   67 (378)
Q Consensus         6 v~~ms~ap~D~se~~vq~A~er----g~~---~~~~v~dae~-LPfpd~SFD~V~cs~~l----------~hw~~~~~~~   67 (378)
                      |++++++     +.+++.|+++    |+.   +.+..+|+.. ++..+++||+|++.--.          .+....-...
T Consensus       565 V~aVD~s-----~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~l  639 (703)
T 3v97_A          565 TTTVDMS-----RTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLAL  639 (703)
T ss_dssp             EEEEESC-----HHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHH
T ss_pred             EEEEeCC-----HHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHH
Confidence            6666665     5788887774    554   7788888765 56667899999984311          1111112367


Q ss_pred             HHHHhhcccCCcEEEEEcCC
Q 017068           68 LIEVDRLLRPGGYLVISGPP   87 (378)
Q Consensus        68 L~Ev~RVLkPGG~lvis~pp   87 (378)
                      +.++.++|||||+|+++...
T Consensus       640 l~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          640 MKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             HHHHHHHEEEEEEEEEEECC
T ss_pred             HHHHHHhcCCCcEEEEEECC
Confidence            89999999999999998764

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=95.53  E-value=0.0013  Score=60.43  Aligned_cols=39  Identities=8%  Similarity=0.109  Sum_probs=28.1

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD  266 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e  266 (378)
                      -.+|||+|||.|.++..|..+..   +|+-.|-. .++..+-+
T Consensus        30 ~~~VLDiG~G~G~~~~~l~~~~~---~v~~id~~~~~~~~a~~   69 (245)
T 1yub_A           30 TDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSE   69 (245)
T ss_dssp             SEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSC
T ss_pred             CCEEEEEeCCCCHHHHHHHHhCC---eEEEEECCHHHHHHHHH
Confidence            46899999999999999987653   55666654 55544433

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=95.51  E-value=0.006  Score=62.28  Aligned_cols=78  Identities=18%  Similarity=0.189  Sum_probs=51.1

Q ss_pred             eEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCC-CCCCceeEEEecC------cc-------ccccCCh--
Q 017068            6 ILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLP-FPAFSFDIVHCSR------CL-------IPFTAYN--   64 (378)
Q Consensus         6 v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LP-fpd~SFD~V~cs~------~l-------~hw~~~~--   64 (378)
                      |+++++     |+.+++.|+++    |+. +.+..+|+..++ +.+++||.|++.-      .+       ..|....  
T Consensus       133 V~AvDi-----s~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~  207 (456)
T 3m4x_A          133 LVTNEI-----FPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPL  207 (456)
T ss_dssp             EEEECS-----SHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHH
T ss_pred             EEEEeC-----CHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHH
Confidence            555554     46777776664    554 566677877765 4568999998631      01       1121111  


Q ss_pred             ------HHHHHHHhhcccCCcEEEEEcCCC
Q 017068           65 ------ATYLIEVDRLLRPGGYLVISGPPV   88 (378)
Q Consensus        65 ------~~~L~Ev~RVLkPGG~lvis~pp~   88 (378)
                            ..+|.++.++|||||++++++-..
T Consensus       208 ~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  237 (456)
T 3m4x_A          208 YCQKRQQEILSSAIKMLKNKGQLIYSTCTF  237 (456)
T ss_dssp             HHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence                  267999999999999999986533

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=95.41  E-value=0.0062  Score=60.40  Aligned_cols=47  Identities=21%  Similarity=0.291  Sum_probs=37.0

Q ss_pred             CCCCCCCCceeEEEecCccccccCChH---------------------------------HHHHHHhhcccCCcEEEEEc
Q 017068           39 RRLPFPAFSFDIVHCSRCLIPFTAYNA---------------------------------TYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        39 e~LPfpd~SFD~V~cs~~l~hw~~~~~---------------------------------~~L~Ev~RVLkPGG~lvis~   85 (378)
                      ..-.||++|||+|+++.++ ||.....                                 .+|+-..|.|+|||.++++.
T Consensus       131 y~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~  209 (359)
T 1m6e_X          131 YGRLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             SSCCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             hhccCCCCceEEEEehhhh-hhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            4468999999999999987 7854311                                 22777799999999999875


Q ss_pred             C
Q 017068           86 P   86 (378)
Q Consensus        86 p   86 (378)
                      .
T Consensus       210 ~  210 (359)
T 1m6e_X          210 L  210 (359)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=95.40  E-value=0.0092  Score=56.91  Aligned_cols=64  Identities=16%  Similarity=0.235  Sum_probs=41.3

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc--cccc-ccccccCCCCCCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL--IGVY-HDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig~~-~~w~~~f~typrtyDliH~~~~  295 (378)
                      .+|||+|||.|.++..|..+..   .|+..|.. ..++.+-++    |+  +-++ .|.. .++ + .+||+|.++-.
T Consensus        44 ~~VLDiG~G~G~lt~~La~~~~---~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~-~~~-~-~~~D~Vv~n~p  115 (299)
T 2h1r_A           44 DIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAI-KTV-F-PKFDVCTANIP  115 (299)
T ss_dssp             CEEEEECCTTSTTHHHHTTTSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CC-SSC-C-CCCSEEEEECC
T ss_pred             CEEEEEcCcCcHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchh-hCC-c-ccCCEEEEcCC
Confidence            5899999999999999998865   56777765 666665543    33  1111 2221 222 1 47999988633

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=95.38  E-value=0.0018  Score=66.06  Aligned_cols=122  Identities=19%  Similarity=0.223  Sum_probs=64.6

Q ss_pred             eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----ccc--ccc-ccccccCC-CCCCcccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GLI--GVY-HDWCEPFS-TYPRTYDLIHVS  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gli--g~~-~~w~~~f~-typrtyDliH~~  293 (378)
                      ..|||||||.|+.+.+|...   .-   .|+..|.+ ..+..+-++    |+-  -+. .|-.. ++ .++.+||+|-++
T Consensus       107 ~~VLDlcaGpGgkt~~lA~~~~~~g---~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~-l~~~~~~~FD~Il~D  182 (456)
T 3m4x_A          107 EKVLDLCAAPGGKSTQLAAQMKGKG---LLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAE-LVPHFSGFFDRIVVD  182 (456)
T ss_dssp             CEEEESSCTTCHHHHHHHHHHTTCS---EEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHH-HHHHHTTCEEEEEEE
T ss_pred             CEEEEECCCcCHHHHHHHHHcCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHH-hhhhccccCCEEEEC
Confidence            37999999999998887642   22   24556655 555544332    441  111 12111 22 235789999864


Q ss_pred             Ccccc---c-cCCCCC--CCCCCc-------cceeeeecccccCCCeEEEeC----CHHHHHHHHHHHhcCCceE
Q 017068          294 GIESL---I-KNPGSN--KNSCSL-------VDLMVEMDRMLRPEGTVVVRD----SPEVIDKVSRIANTVRWTA  351 (378)
Q Consensus       294 ~~~~~---~-~~~~~~--~~~c~~-------~~~l~EmDRiLRPgG~~ii~d----~~~~~~~~~~~~~~l~W~~  351 (378)
                      --.|.   + ++|+..  ...-.+       ..+|-++-|+|||||.+|++.    ..+.-+.|+.+++..-+++
T Consensus       183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~~l  257 (456)
T 3m4x_A          183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTI  257 (456)
T ss_dssp             CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEE
T ss_pred             CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCCEE
Confidence            22110   0 000000  000000       167888999999999999863    2233344555555544443

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=95.27  E-value=0.018  Score=54.50  Aligned_cols=74  Identities=15%  Similarity=0.193  Sum_probs=50.6

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCce---eEEEec------------CccccccC-
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSF---DIVHCS------------RCLIPFTA-   62 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SF---D~V~cs------------~~l~hw~~-   62 (378)
                      .|++++++     +.+++.|+++    ++.  +.+..+|... +++ ++|   |+|+|+            .+. |.+. 
T Consensus       148 ~v~~vDis-----~~al~~A~~n~~~~~l~~~v~~~~~D~~~-~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~  219 (284)
T 1nv8_A          148 IVFATDVS-----SKAVEIARKNAERHGVSDRFFVRKGEFLE-PFK-EKFASIEMILSNPPYVKSSAHLPKDVL-FEPPE  219 (284)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHTTCTTSEEEEESSTTG-GGG-GGTTTCCEEEECCCCBCGGGSCTTSCC-CSCHH
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHcCCCCceEEEECcchh-hcc-cccCCCCEEEEcCCCCCcccccChhhc-cCcHH
Confidence            45555554     6888888775    443  7788888765 343 589   999996            111 2211 


Q ss_pred             ------ChHHHHHHHh-hcccCCcEEEEEcC
Q 017068           63 ------YNATYLIEVD-RLLRPGGYLVISGP   86 (378)
Q Consensus        63 ------~~~~~L~Ev~-RVLkPGG~lvis~p   86 (378)
                            +...+++++. +.|+|||++++...
T Consensus       220 al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~  250 (284)
T 1nv8_A          220 ALFGGEDGLDFYREFFGRYDTSGKIVLMEIG  250 (284)
T ss_dssp             HHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred             HhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence                  1126899999 99999999998654

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=95.10  E-value=0.011  Score=62.93  Aligned_cols=126  Identities=16%  Similarity=0.173  Sum_probs=72.8

Q ss_pred             CccccccchHHHH---HHHHHHHHHh-hhhcCCCCeeEEEecCCcceee------eeeccCCCeeEEEeccCCCC----c
Q 017068          194 GYDVFEADSRRWR---RRVAYYKNTL-NVKLGTPAIRNIMDMNAFFGGF------AAALTSDPVWVMNVVPARKS----S  259 (378)
Q Consensus       194 ~~~~F~~d~~~w~---~~v~~Y~~~~-~~~~~~~~iR~vlDm~ag~g~f------aa~L~~~~vwvmnv~p~~~~----~  259 (378)
                      +.|.|+.|.-.+.   +.+..++... ...-...+.-.|||+|||.|-+      ||+-...+|   -|-.+++.    -
T Consensus       323 tYevFEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~v---kVyAVEknp~A~~  399 (637)
T 4gqb_A          323 TYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRI---KLYAVEKNPNAVV  399 (637)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEE---EEEEEESCHHHHH
T ss_pred             hhhhhcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCc---EEEEEECCHHHHH
Confidence            5688999975543   3343333222 1112334567899999999966      344444544   22333332    4


Q ss_pred             chHHHHhhcc---ccccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEE
Q 017068          260 TLSVIYDRGL---IGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV  330 (378)
Q Consensus       260 ~l~~i~eRGl---ig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii  330 (378)
                      +++.+-+.|+   |-++|.--|... -|.-.|+|-+-++-+.+-     ++  .|-.+|.=-||.|+|||.+|=
T Consensus       400 a~~~v~~N~~~dkVtVI~gd~eev~-LPEKVDIIVSEwMG~fLl-----~E--~mlevL~Ardr~LKPgGimiP  465 (637)
T 4gqb_A          400 TLENWQFEEWGSQVTVVSSDMREWV-APEKADIIVSELLGSFAD-----NE--LSPECLDGAQHFLKDDGVSIP  465 (637)
T ss_dssp             HHHHHHHHTTGGGEEEEESCTTTCC-CSSCEEEEECCCCBTTBG-----GG--CHHHHHHHHGGGEEEEEEEES
T ss_pred             HHHHHHhccCCCeEEEEeCcceecc-CCcccCEEEEEcCccccc-----cc--CCHHHHHHHHHhcCCCcEEcc
Confidence            6688888887   555655444432 256688888765533322     01  122344445999999998653

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=95.05  E-value=0.0042  Score=61.08  Aligned_cols=122  Identities=13%  Similarity=0.071  Sum_probs=69.3

Q ss_pred             CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc---cccc-ccccccCCCCCCccccccccC
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL---IGVY-HDWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~~-~~w~~~f~typrtyDliH~~~  294 (378)
                      .-..|||+|||+|+|+..+....-+. .|.-.|.. .++..+-++    |+   +-+. .|.. .++..+.+||+|.|+-
T Consensus       217 ~~~~vLD~gCGsG~~~i~~a~~~~~~-~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~-~~~~~~~~fD~Ii~np  294 (373)
T 3tm4_A          217 DGGSVLDPMCGSGTILIELALRRYSG-EIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDAT-QLSQYVDSVDFAISNL  294 (373)
T ss_dssp             CSCCEEETTCTTCHHHHHHHHTTCCS-CEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGG-GGGGTCSCEEEEEEEC
T ss_pred             CCCEEEEccCcCcHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh-hCCcccCCcCEEEECC
Confidence            34679999999999988776543210 34555654 666555443    44   2221 2222 2343347999999976


Q ss_pred             ccccccCCCCCCCCCC-ccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEE
Q 017068          295 IESLIKNPGSNKNSCS-LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~-~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~  353 (378)
                      -|..-.+  .....-. ...++-|+-|+| +|+.+++..+.+.+.   +.+..+.|+...
T Consensus       295 Pyg~r~~--~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~~~~~~~---~~~~~~G~~~~~  348 (373)
T 3tm4_A          295 PYGLKIG--KKSMIPDLYMKFFNELAKVL-EKRGVFITTEKKAIE---EAIAENGFEIIH  348 (373)
T ss_dssp             CCC--------CCHHHHHHHHHHHHHHHE-EEEEEEEESCHHHHH---HHHHHTTEEEEE
T ss_pred             CCCcccC--cchhHHHHHHHHHHHHHHHc-CCeEEEEECCHHHHH---HHHHHcCCEEEE
Confidence            5543210  0000001 145777899999 666677766654443   456667777653

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=95.05  E-value=0.0066  Score=60.74  Aligned_cols=19  Identities=11%  Similarity=-0.008  Sum_probs=15.9

Q ss_pred             eeEEEecCCcceeeeeecc
Q 017068          225 IRNIMDMNAFFGGFAAALT  243 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~  243 (378)
                      .=.|+|+||++|..+..++
T Consensus        53 ~~~IaDlGCssG~NT~~~v   71 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTV   71 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHH
T ss_pred             ceEEEecCCCCCchHHHHH
Confidence            6678999999998877664

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=95.04  E-value=0.0057  Score=56.53  Aligned_cols=41  Identities=15%  Similarity=0.107  Sum_probs=31.0

Q ss_pred             CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR  267 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR  267 (378)
                      .-.+|||+|||+|.++..|.++..   .|+-.|.. ..+..+-++
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~~~~~---~v~~vD~~~~~~~~a~~~   71 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENK   71 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHH
T ss_pred             CCCEEEEEeCCchHHHHHHHHcCC---eEEEEECCHHHHHHHHHh
Confidence            345899999999999999987763   56777765 666666554

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=94.99  E-value=0.0065  Score=59.89  Aligned_cols=78  Identities=17%  Similarity=0.065  Sum_probs=52.1

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCCCC----CCCceeEEEecCccccc--------cCChHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPF----PAFSFDIVHCSRCLIPF--------TAYNAT   66 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~LPf----pd~SFD~V~cs~~l~hw--------~~~~~~   66 (378)
                      .|++++++     +.+++.|+++    ++  .+.+..+|+..+..    ++++||+|++.--....        ......
T Consensus       242 ~v~~vD~s-----~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~  316 (396)
T 2as0_A          242 EVIGIDKS-----PRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFN  316 (396)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHH
T ss_pred             EEEEEeCC-----HHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
Confidence            46666665     5777777664    55  46788888765421    36799999984321110        011237


Q ss_pred             HHHHHhhcccCCcEEEEEcCC
Q 017068           67 YLIEVDRLLRPGGYLVISGPP   87 (378)
Q Consensus        67 ~L~Ev~RVLkPGG~lvis~pp   87 (378)
                      ++.++.++|+|||.++++...
T Consensus       317 ~l~~~~~~LkpgG~lv~~~~~  337 (396)
T 2as0_A          317 VNFAGLNLVKDGGILVTCSCS  337 (396)
T ss_dssp             HHHHHHTTEEEEEEEEEEECC
T ss_pred             HHHHHHHhcCCCcEEEEEECC
Confidence            889999999999999988753

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=94.94  E-value=0.0065  Score=59.78  Aligned_cols=78  Identities=17%  Similarity=0.132  Sum_probs=51.9

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCCC----CCCceeEEEecCcccccc--------CChHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPF----PAFSFDIVHCSRCLIPFT--------AYNATY   67 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LPf----pd~SFD~V~cs~~l~hw~--------~~~~~~   67 (378)
                      .|+++++     |+.+++.|+++    |+. +.+..+|+.....    .+++||+|++.--.....        .....+
T Consensus       233 ~v~~vD~-----s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~  307 (382)
T 1wxx_A          233 EVVAVDS-----SAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEV  307 (382)
T ss_dssp             EEEEEES-----CHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHH
T ss_pred             EEEEEEC-----CHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHH
Confidence            3555554     46788877775    444 6788888765422    267999999843111110        111368


Q ss_pred             HHHHhhcccCCcEEEEEcCC
Q 017068           68 LIEVDRLLRPGGYLVISGPP   87 (378)
Q Consensus        68 L~Ev~RVLkPGG~lvis~pp   87 (378)
                      +.++.++|+|||+++++..+
T Consensus       308 l~~~~~~LkpgG~l~~~~~~  327 (382)
T 1wxx_A          308 NLRAIKLLKEGGILATASCS  327 (382)
T ss_dssp             HHHHHHTEEEEEEEEEEECC
T ss_pred             HHHHHHhcCCCCEEEEEECC
Confidence            89999999999999998764

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=94.86  E-value=0.015  Score=57.26  Aligned_cols=79  Identities=13%  Similarity=0.072  Sum_probs=53.4

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC---CeEEEEcccCCCCC----CCCceeEEEecCcc--------ccccCChH
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI---PAFVAMLGTRRLPF----PAFSFDIVHCSRCL--------IPFTAYNA   65 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~---~~~~~v~dae~LPf----pd~SFD~V~cs~~l--------~hw~~~~~   65 (378)
                      .|++++++     +.+++.|+++    |+   .+.+..+|+.....    .+++||+|++.--.        .+......
T Consensus       245 ~V~~vD~s-----~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~  319 (396)
T 3c0k_A          245 QVVSVDTS-----QEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYK  319 (396)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHH
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHH
Confidence            46666665     5777777664    56   57788888755421    25789999985311        11112224


Q ss_pred             HHHHHHhhcccCCcEEEEEcCCC
Q 017068           66 TYLIEVDRLLRPGGYLVISGPPV   88 (378)
Q Consensus        66 ~~L~Ev~RVLkPGG~lvis~pp~   88 (378)
                      ..+.++.++|+|||.++++..+.
T Consensus       320 ~~l~~~~~~LkpgG~l~~~~~~~  342 (396)
T 3c0k_A          320 DINMLAIQLLNEGGILLTFSCSG  342 (396)
T ss_dssp             HHHHHHHHTEEEEEEEEEEECCT
T ss_pred             HHHHHHHHhcCCCcEEEEEeCCC
Confidence            78899999999999999987643

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=94.70  E-value=0.043  Score=53.06  Aligned_cols=69  Identities=9%  Similarity=0.143  Sum_probs=50.2

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG   78 (378)
                      .|+++++.     +.+++.|+++    ++  .+.+..+|+...+   ++||+|++.-     +.....++.++.++|+||
T Consensus       218 ~V~~vD~s-----~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dp-----P~~~~~~l~~~~~~L~~g  284 (336)
T 2yx1_A          218 KIYAIDIN-----PHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNL-----PKFAHKFIDKALDIVEEG  284 (336)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECC-----TTTGGGGHHHHHHHEEEE
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECC-----cHhHHHHHHHHHHHcCCC
Confidence            46666665     5777777664    44  4778888987765   8999999852     111237899999999999


Q ss_pred             cEEEEEcC
Q 017068           79 GYLVISGP   86 (378)
Q Consensus        79 G~lvis~p   86 (378)
                      |.++++..
T Consensus       285 G~l~~~~~  292 (336)
T 2yx1_A          285 GVIHYYTI  292 (336)
T ss_dssp             EEEEEEEE
T ss_pred             CEEEEEEe
Confidence            99988654

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=94.65  E-value=0.026  Score=56.20  Aligned_cols=76  Identities=14%  Similarity=-0.004  Sum_probs=48.9

Q ss_pred             eEEEecCCCCChHHHHHHHHHc----CCCeEEEEcccCCC-CCCCCceeEEEecCcccccc--------CChHHHHHHHh
Q 017068            6 ILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRL-PFPAFSFDIVHCSRCLIPFT--------AYNATYLIEVD   72 (378)
Q Consensus         6 v~~ms~ap~D~se~~vq~A~er----g~~~~~~v~dae~L-Pfpd~SFD~V~cs~~l~hw~--------~~~~~~L~Ev~   72 (378)
                      |++++++     +.+++.|+++    |+...+..+|+... +...+.||+|++.--...-.        ..-..++.++.
T Consensus       239 V~avDis-----~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~  313 (393)
T 4dmg_A          239 ALAVDKD-----LEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREAL  313 (393)
T ss_dssp             EEEEESC-----HHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHH
T ss_pred             EEEEECC-----HHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            6666655     5777777764    66656667887553 22234499999853211100        11137888999


Q ss_pred             hcccCCcEEEEEcC
Q 017068           73 RLLRPGGYLVISGP   86 (378)
Q Consensus        73 RVLkPGG~lvis~p   86 (378)
                      |+|||||++++++.
T Consensus       314 ~~LkpGG~Lv~~s~  327 (393)
T 4dmg_A          314 RLLAEEGFLWLSSC  327 (393)
T ss_dssp             HTEEEEEEEEEEEC
T ss_pred             HhcCCCCEEEEEEC
Confidence            99999999997654

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=94.38  E-value=0.013  Score=55.51  Aligned_cols=70  Identities=14%  Similarity=0.144  Sum_probs=47.2

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC----C--CeEEEEcccCCCCCCCCceeEEEecCccccccCChH-HHH---------
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG----I--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNA-TYL---------   68 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg----~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~-~~L---------   68 (378)
                      .|++++++     +.+++.|+++.    .  .+.+..+|+.+++++  +||+|+++. .+||..+.- ..+         
T Consensus        52 ~v~~vD~~-----~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~fD~vv~nl-py~~~~~~~~~~l~~~~~~~~~  123 (285)
T 1zq9_A           52 KVVACELD-----PRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVANL-PYQISSPFVFKLLLHRPFFRCA  123 (285)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEEC-CGGGHHHHHHHHHHCSSCCSEE
T ss_pred             EEEEEECC-----HHHHHHHHHHHHhcCCCCceEEEEcceecccch--hhcEEEEec-CcccchHHHHHHHhcCcchhhh
Confidence            45666555     68888888762    2  467888999888887  799999864 345543321 122         


Q ss_pred             -----HHH--hhcccCCcEEE
Q 017068           69 -----IEV--DRLLRPGGYLV   82 (378)
Q Consensus        69 -----~Ev--~RVLkPGG~lv   82 (378)
                           +|+  +|+|||||.++
T Consensus       124 ~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A          124 ILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             EEEEEHHHHHHHHCCTTCTTC
T ss_pred             hhhhhHHHHHHHhcCCCCccc
Confidence                 455  37999999874

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=94.37  E-value=0.026  Score=53.54  Aligned_cols=73  Identities=10%  Similarity=-0.065  Sum_probs=55.9

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY   80 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~   80 (378)
                      .++++||+     ..++++|+++    |.+..+.+.|....|++. +||+|+..-+++|..+.+...+.++..-|+++|.
T Consensus       128 ~y~a~DId-----~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~v  201 (253)
T 3frh_A          128 SVWGCDIH-----QGLGDVITPFAREKDWDFTFALQDVLCAPPAE-AGDLALIFKLLPLLEREQAGSAMALLQSLNTPRM  201 (253)
T ss_dssp             EEEEEESB-----HHHHHHHHHHHHHTTCEEEEEECCTTTSCCCC-BCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEE
T ss_pred             eEEEEeCC-----HHHHHHHHHHHHhcCCCceEEEeecccCCCCC-CcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCE
Confidence            45555555     6888888875    677788899988888776 8999999988888765443455589999999987


Q ss_pred             EEE
Q 017068           81 LVI   83 (378)
Q Consensus        81 lvi   83 (378)
                      ++-
T Consensus       202 vVs  204 (253)
T 3frh_A          202 AVS  204 (253)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=94.30  E-value=0.027  Score=55.67  Aligned_cols=79  Identities=9%  Similarity=0.155  Sum_probs=51.0

Q ss_pred             CeEEEecCCCCChHHHHHHHHH----cCC---CeEEEEcccCC-CCC---CCCceeEEEecCccc-----cccCC---hH
Q 017068            5 NILTLSFAPRDSHKAQIQFALE----RGI---PAFVAMLGTRR-LPF---PAFSFDIVHCSRCLI-----PFTAY---NA   65 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~e----rg~---~~~~~v~dae~-LPf---pd~SFD~V~cs~~l~-----hw~~~---~~   65 (378)
                      .|++++++|     .+++.|++    .++   .+.+..+|+.. ++.   ..++||+|++.--..     +..+.   -.
T Consensus       237 ~V~~vD~s~-----~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~  311 (385)
T 2b78_A          237 ATTSVDLAK-----RSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYH  311 (385)
T ss_dssp             EEEEEESCT-----THHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHH
T ss_pred             EEEEEECCH-----HHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHH
Confidence            578888776     45555554    355   46788888754 332   256899999842211     11111   12


Q ss_pred             HHHHHHhhcccCCcEEEEEcCCC
Q 017068           66 TYLIEVDRLLRPGGYLVISGPPV   88 (378)
Q Consensus        66 ~~L~Ev~RVLkPGG~lvis~pp~   88 (378)
                      .++.++.++|+|||.++++..+.
T Consensus       312 ~ll~~~~~~L~pgG~l~~~~~~~  334 (385)
T 2b78_A          312 KLIRQGLEILSENGLIIASTNAA  334 (385)
T ss_dssp             HHHHHHHHTEEEEEEEEEEECCT
T ss_pred             HHHHHHHHhcCCCcEEEEEeCCC
Confidence            46778899999999999987643

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=94.18  E-value=0.05  Score=54.56  Aligned_cols=162  Identities=11%  Similarity=0.079  Sum_probs=0.0

Q ss_pred             HHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccC-----------------CCeeEEEeccCCCCcchHHHHhhcc---
Q 017068          210 AYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS-----------------DPVWVMNVVPARKSSTLSVIYDRGL---  269 (378)
Q Consensus       210 ~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~-----------------~~vwvmnv~p~~~~~~l~~i~eRGl---  269 (378)
                      ....+.|...+....-..|+|.+||+|+|..++.+                 ..+.-.=+.|....-...-..-+|+   
T Consensus       157 ~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~  236 (445)
T 2okc_A          157 RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD  236 (445)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcC


Q ss_pred             -ccccccccccCCCCCCccccccccCccccccCCCCCCCCCCcc--------ceeeeecccccCCCeEEEeCCHHHH---
Q 017068          270 -IGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLV--------DLMVEMDRMLRPEGTVVVRDSPEVI---  337 (378)
Q Consensus       270 -ig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~--------~~l~EmDRiLRPgG~~ii~d~~~~~---  337 (378)
                       +.+.+.=....+... .||+|-+.--|+..........+-.+.        ..+.++=|+|+|||.+++--+...+   
T Consensus       237 ~~~i~~gD~l~~~~~~-~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~  315 (445)
T 2okc_A          237 RSPIVCEDSLEKEPST-LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEA  315 (445)
T ss_dssp             CCSEEECCTTTSCCSS-CEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCS
T ss_pred             CCCEeeCCCCCCcccC-CcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcccccC


Q ss_pred             ---HHHHH-HHhcCCceEEE---ecCCCCCCCCeEEEEEEec
Q 017068          338 ---DKVSR-IANTVRWTAAV---HDKEPGSNGREKILVATKS  372 (378)
Q Consensus       338 ---~~~~~-~~~~l~W~~~~---~~~~~~~~~~e~~l~~~K~  372 (378)
                         .++.+ +.+....+..+   ...=.+....--|++.+|.
T Consensus       316 ~~~~~iR~~L~~~~~l~~ii~lp~~~F~~t~v~t~Il~~~k~  357 (445)
T 2okc_A          316 GAGETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKG  357 (445)
T ss_dssp             THHHHHHHHHHHHEEEEEEEECCSSSSSSTTCCEEEEEEEES
T ss_pred             cHHHHHHHHHHhcCcEEEEEeCCCCCccCCCCCEEEEEEECC

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=93.96  E-value=0.12  Score=44.97  Aligned_cols=70  Identities=11%  Similarity=0.074  Sum_probs=50.8

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccC-ChHHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~-~~~~~L~Ev~RVLkPGG   79 (378)
                      .|+++++.     +.+++.|+++    ++.+.+..+|+..+|   ++||+|++.-.++++.. .....++++.++|  ||
T Consensus        74 ~v~~vD~~-----~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~  143 (207)
T 1wy7_A           74 EVICVEVD-----KEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DV  143 (207)
T ss_dssp             EEEEEESC-----HHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SE
T ss_pred             EEEEEECC-----HHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCccccCCchHHHHHHHHHhc--Cc
Confidence            36666655     6888888876    336788888988864   48999999876655542 2247899999999  66


Q ss_pred             EEEEE
Q 017068           80 YLVIS   84 (378)
Q Consensus        80 ~lvis   84 (378)
                      .+++.
T Consensus       144 ~~~~~  148 (207)
T 1wy7_A          144 VYSIH  148 (207)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66554

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=93.86  E-value=0.012  Score=58.55  Aligned_cols=18  Identities=6%  Similarity=0.182  Sum_probs=15.3

Q ss_pred             eeeeecccccCCCeEEEe
Q 017068          314 LMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       314 ~l~EmDRiLRPgG~~ii~  331 (378)
                      +|-..-|.|+|||.+++.
T Consensus       207 fL~~ra~eL~pGG~mvl~  224 (374)
T 3b5i_A          207 FLRARAAEVKRGGAMFLV  224 (374)
T ss_dssp             HHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHhCCCCEEEEE
Confidence            455669999999999996

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.60  E-value=0.088  Score=50.71  Aligned_cols=92  Identities=17%  Similarity=0.239  Sum_probs=53.5

Q ss_pred             eEEEEcccCC-CC-CCCCceeEEEecC--ccc---cc--------cCChHHHHHHHhhcccCCcEEEEEcCCCCCCcc--
Q 017068           31 AFVAMLGTRR-LP-FPAFSFDIVHCSR--CLI---PF--------TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQ--   93 (378)
Q Consensus        31 ~~~~v~dae~-LP-fpd~SFD~V~cs~--~l~---hw--------~~~~~~~L~Ev~RVLkPGG~lvis~pp~~~~~~--   93 (378)
                      ..+..+|+.. |. +++++||+|++.=  ...   ++        ...-...+.|+.|+|||||.+++........+.  
T Consensus        15 ~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~~   94 (323)
T 1boo_A           15 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPA   94 (323)
T ss_dssp             EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEEE
T ss_pred             ceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCcc
Confidence            4566777543 44 6789999999862  111   11        111237889999999999999987542211110  


Q ss_pred             --chHHHHHHHHHHHhceeeeccccceEEEeCCCC
Q 017068           94 --DKEWADLQAVARALCYELIAVDGNTVIWKKPVG  126 (378)
Q Consensus        94 --~~~w~~l~~l~~~lcw~~~~~~~~~~iw~Kp~~  126 (378)
                        ...+..+.++.+...|...    +.-+|+|+..
T Consensus        95 ~~~~~~~~i~~~~~~~Gf~~~----~~iiW~k~~~  125 (323)
T 1boo_A           95 RSIYNFRVLIRMIDEVGFFLA----EDFYWFNPSK  125 (323)
T ss_dssp             ECCHHHHHHHHHHHTTCCEEE----EEEEEECSSC
T ss_pred             cccchHHHHHHHHHhCCCEEE----EEEEEecCCC
Confidence              1124444444454445433    2458988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	378
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	0.002

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 1/46 (2%)

Query: 41  LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86
                  +D +H  + L       AT       LL     ++I   
Sbjct: 117 EKKELQKWDFIHMIQMLYYVKDIPATLK-FFHSLLGTNAKMLIIVV 161

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	378
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.17
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.16
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.09
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.08
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.07
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.06
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.93
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.92
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.84
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.83
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	98.81
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.77
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.77
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.76
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.76
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.71
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.71
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.67
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.64
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.63
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.62
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.62
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.61
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.6
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.58
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.57
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.56
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.51
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.5
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.47
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.46
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.44
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.44
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.44
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.44
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.44
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.39
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.38
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.37
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.35
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.3
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.24
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.21
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.21
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.2
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.2
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.17
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.16
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.1
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.1
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.09
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.09
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.07
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.06
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.03
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.98
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	97.97
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	97.95
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	97.92
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.9
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	97.9
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	97.89
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.88
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	97.83
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.8
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	97.79
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	97.79
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.74
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.73
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	97.72
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	97.71
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	97.66
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	97.65
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.65
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.65
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	97.64
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.61
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.61
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.59
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.46
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.46
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.39
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	97.36
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.34
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	97.23
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	97.12
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.11
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.08
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	96.94
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	96.91
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	96.85
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	96.75
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	96.67
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	96.48
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	96.45
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.44
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	96.43
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	95.99
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	95.83
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	95.75
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	95.67
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	95.66
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	95.61
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	95.55
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	95.38
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	95.2
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	95.2
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	94.96
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	94.83
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	94.66
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	94.35
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	94.23
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	94.11
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	93.73
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	93.72
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	93.5
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	92.9
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	92.77
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	92.47
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	92.45
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	92.27
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	92.13
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	91.99
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	91.96
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	91.62
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	91.57
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	91.45
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	91.26
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	91.21
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	91.09
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	90.84
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	90.48
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	90.41
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	90.19
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	88.81
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	88.28
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	87.38
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	86.65
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	85.12
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	85.03
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	84.38
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	84.16
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	84.13
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	83.46
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	81.37
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	80.51

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.17  E-value=1.9e-11  Score=110.01  Aligned_cols=76  Identities=24%  Similarity=0.384  Sum_probs=64.1

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      +|+++++     |+.|++.|+++    +.+ +.+.++|++++||++++||+|+|..+++|++++. .+++|+.|+|||||
T Consensus        40 ~v~gvD~-----S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~-~~l~~~~r~LkpgG  113 (234)
T d1xxla_          40 ECIGVDA-----TKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVR-KAVREVARVLKQDG  113 (234)
T ss_dssp             EEEEEES-----CHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGGCSCHH-HHHHHHHHHEEEEE
T ss_pred             eEEEEeC-----ChhhhhhhhhhhcccccccccccccccccccccccccceeeeeceeecccCHH-HHHHHHHHeeCCCc
Confidence            4555554     56888888765    443 7788999999999999999999999999888877 99999999999999


Q ss_pred             EEEEEcC
Q 017068           80 YLVISGP   86 (378)
Q Consensus        80 ~lvis~p   86 (378)
                      +++++..
T Consensus       114 ~~~~~~~  120 (234)
T d1xxla_         114 RFLLVDH  120 (234)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEc
Confidence            9999754

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.16  E-value=1.1e-11  Score=110.25  Aligned_cols=76  Identities=20%  Similarity=0.342  Sum_probs=63.3

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG   79 (378)
                      .|++++     +|+.|++.|+++    +. .+.+.+++++.+||++++||+|+|..+++|+.++. .+++|+.|+|||||
T Consensus        39 ~v~gvD-----~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l~~~~d~~-~~l~~~~r~LkpgG  112 (231)
T d1vl5a_          39 KVVAFD-----LTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPA-SFVSEAYRVLKKGG  112 (231)
T ss_dssp             EEEEEE-----SCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGGGCSCHH-HHHHHHHHHEEEEE
T ss_pred             EEEEEE-----CCHHHHhhhhhcccccccccccccccccccccccccccccccccccccccCCHH-HHHHHHHHhcCCCc
Confidence            355554     457888888765    33 36789999999999999999999999999988877 99999999999999


Q ss_pred             EEEEEcC
Q 017068           80 YLVISGP   86 (378)
Q Consensus        80 ~lvis~p   86 (378)
                      +|++..+
T Consensus       113 ~l~i~~~  119 (231)
T d1vl5a_         113 QLLLVDN  119 (231)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEeC
Confidence            9999754

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.09  E-value=2.9e-11  Score=106.25  Aligned_cols=77  Identities=21%  Similarity=0.300  Sum_probs=64.1

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGG   79 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG   79 (378)
                      .|+++|     +|+.|++.|+++    +..+.+..+|++++|+++++||+|+|..+++|+++.+ .++|+|+.|+|||||
T Consensus        61 ~v~giD-----~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG  135 (226)
T d1ve3a1          61 EVVGVD-----ISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSG  135 (226)
T ss_dssp             EEEEEE-----SCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEE
T ss_pred             cccccc-----ccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCc
Confidence            455554     557899888775    5667788899999999999999999999999986433 479999999999999


Q ss_pred             EEEEEcC
Q 017068           80 YLVISGP   86 (378)
Q Consensus        80 ~lvis~p   86 (378)
                      +|++..+
T Consensus       136 ~lii~~~  142 (226)
T d1ve3a1         136 KFIMYFT  142 (226)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEc
Confidence            9998764

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.08  E-value=5.5e-11  Score=104.54  Aligned_cols=70  Identities=26%  Similarity=0.369  Sum_probs=63.1

Q ss_pred             CChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcCC
Q 017068           15 DSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP   87 (378)
Q Consensus        15 D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~pp   87 (378)
                      |.|+.|++.|+++++  .+..++++.+|+++++||+|+|..+++|++++. .+++|+.|+|||||.+++..+.
T Consensus        61 D~s~~~~~~a~~~~~--~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~~-~~l~~~~~~L~pgG~l~i~~~~  130 (208)
T d1vlma_          61 EPSERMAEIARKRGV--FVLKGTAENLPLKDESFDFALMVTTICFVDDPE-RALKEAYRILKKGGYLIVGIVD  130 (208)
T ss_dssp             ESCHHHHHHHHHTTC--EEEECBTTBCCSCTTCEEEEEEESCGGGSSCHH-HHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eCChhhccccccccc--ccccccccccccccccccccccccccccccccc-cchhhhhhcCCCCceEEEEecC
Confidence            456799999999864  678899999999999999999999999998776 9999999999999999998763

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.07  E-value=3.8e-11  Score=106.85  Aligned_cols=70  Identities=27%  Similarity=0.423  Sum_probs=59.7

Q ss_pred             CChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEec-CccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCS-RCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs-~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.|+.|++.|++++... +..++++.|||++++||+|+|. .+++|++++. .+|+|+.|+|||||+++++.+
T Consensus        71 D~s~~~l~~a~~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~-~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1          71 DPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVENKD-KAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             ESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCSCHH-HHHHHHHHHEEEEEEEEEEEE
T ss_pred             ecccccccccccccccc-cccccccccccccccccceeeecchhhhhhhHH-HHHHHHHhhcCcCcEEEEEEC
Confidence            44579999999997654 5678999999999999999986 4667777766 899999999999999999875

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.06  E-value=7.4e-11  Score=109.23  Aligned_cols=76  Identities=22%  Similarity=0.292  Sum_probs=65.3

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG   78 (378)
                      .|++++++     +.|++.|+++    |+  .+.+..+|++++||++++||+|+|..+++|+++.. .+++|+.|+||||
T Consensus        92 ~v~gvD~s-----~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d~~-~~l~~~~~~Lkpg  165 (282)
T d2o57a1          92 SIDCLNIA-----PVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKL-KVFQECARVLKPR  165 (282)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHH-HHHHHHHHHEEEE
T ss_pred             EEEEEecc-----chhhhhhhcccccccccccccccccccccccccccccchhhccchhhhccCHH-HHHHHHHHhcCCC
Confidence            45666555     5888888775    44  37788999999999999999999999999998877 9999999999999


Q ss_pred             cEEEEEcC
Q 017068           79 GYLVISGP   86 (378)
Q Consensus        79 G~lvis~p   86 (378)
                      |+|+++.+
T Consensus       166 G~l~~~~~  173 (282)
T d2o57a1         166 GVMAITDP  173 (282)
T ss_dssp             EEEEEEEE
T ss_pred             cEEEEEEe
Confidence            99999865

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=3.3e-10  Score=104.92  Aligned_cols=64  Identities=27%  Similarity=0.423  Sum_probs=57.9

Q ss_pred             CChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |+|+.|++.|+++...+.+.++|++++||++++||+|+|.++++|        ++|+.|+|||||+|+++.|
T Consensus       115 D~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--------~~e~~rvLkpgG~l~~~~p  178 (268)
T d1p91a_         115 DVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--------AEELARVVKPGGWVITATP  178 (268)
T ss_dssp             ESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC--------HHHHHHHEEEEEEEEEEEE
T ss_pred             cchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH--------HHHHHHHhCCCcEEEEEee
Confidence            455799999999988889999999999999999999999877655        5899999999999999987

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=5.9e-10  Score=100.82  Aligned_cols=70  Identities=17%  Similarity=0.222  Sum_probs=61.2

Q ss_pred             CChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.|+.|++.|+++    |+.  +.+..+|++.+ +++++||+|+|..+++|+.+.. .+++|++|+|||||+++++.+
T Consensus        63 D~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~~~~~d~~-~~l~~~~r~LkPGG~l~i~~~  138 (245)
T d1nkva_          63 DMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANEKCDVAACVGATWIAGGFA-GAEELLAQSLKPGGIMLIGEP  138 (245)
T ss_dssp             ESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSSCEEEEEEESCGGGTSSSH-HHHHHHTTSEEEEEEEEEEEE
T ss_pred             ecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccCceeEEEEEehhhccCCHH-HHHHHHHHHcCcCcEEEEEec
Confidence            4567999888776    554  68899999988 5789999999999999999888 999999999999999999865

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.84  E-value=3.7e-10  Score=99.07  Aligned_cols=89  Identities=17%  Similarity=0.228  Sum_probs=70.2

Q ss_pred             EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccccccccccccCCCCCCccccccccCccccccCCCCC
Q 017068          227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSN  305 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~  305 (378)
                      .|||+|||+|.|+..|..  +     +-.|.+ .++..+-+|++. .+....+.++..+.+||+|+|..++....     
T Consensus        39 ~vLDiGcG~G~~~~~~~~--~-----~giD~s~~~~~~a~~~~~~-~~~~d~~~l~~~~~~fD~I~~~~~l~h~~-----  105 (208)
T d1vlma_          39 RGVEIGVGTGRFAVPLKI--K-----IGVEPSERMAEIARKRGVF-VLKGTAENLPLKDESFDFALMVTTICFVD-----  105 (208)
T ss_dssp             CEEEETCTTSTTHHHHTC--C-----EEEESCHHHHHHHHHTTCE-EEECBTTBCCSCTTCEEEEEEESCGGGSS-----
T ss_pred             eEEEECCCCcccccccce--E-----EEEeCChhhcccccccccc-ccccccccccccccccccccccccccccc-----
Confidence            599999999999988854  2     334545 889998888753 34444556666669999999999998764     


Q ss_pred             CCCCCccceeeeecccccCCCeEEEeC
Q 017068          306 KNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       306 ~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                          +...+|-|+.|+|+|||.+++.+
T Consensus       106 ----d~~~~l~~~~~~L~pgG~l~i~~  128 (208)
T d1vlma_         106 ----DPERALKEAYRILKKGGYLIVGI  128 (208)
T ss_dssp             ----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----ccccchhhhhhcCCCCceEEEEe
Confidence                24679999999999999999974

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.83  E-value=3.8e-10  Score=100.03  Aligned_cols=94  Identities=16%  Similarity=0.186  Sum_probs=68.2

Q ss_pred             EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHH----hhcc--ccccccccccCCCCCCccccccccCccccc
Q 017068          227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY----DRGL--IGVYHDWCEPFSTYPRTYDLIHVSGIESLI  299 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~----eRGl--ig~~~~w~~~f~typrtyDliH~~~~~~~~  299 (378)
                      .|||+|||+|.|+.+|.++.-   +|+-.|-+ +++..+-    +.|+  +-.++.=.+.+|.-+.+||+|+|..++.+.
T Consensus        18 rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l~~~   94 (231)
T d1vl5a_          18 EVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHF   94 (231)
T ss_dssp             EEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGGGC
T ss_pred             EEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhccccccccccccccccccccccccccccccccccccccc
Confidence            699999999999999987765   55666655 7776543    3344  233322233344334899999999998866


Q ss_pred             cCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          300 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       300 ~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .         +...+|-|+.|+|+|||+++|.+
T Consensus        95 ~---------d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          95 P---------NPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             S---------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             C---------CHHHHHHHHHHhcCCCcEEEEEe
Confidence            4         34678999999999999999964

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.81  E-value=4e-10  Score=101.14  Aligned_cols=99  Identities=15%  Similarity=0.238  Sum_probs=72.0

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hcc--ccccccccccCCCCCCccccccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGL--IGVYHDWCEPFSTYPRTYDLIHV  292 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGl--ig~~~~w~~~f~typrtyDliH~  292 (378)
                      ++.|.  .|||+|||+|.++..|.++.-   +|+-+|.+ .+|+.+-+    +|+  +-.+..=.+.+|.-..+||+|.|
T Consensus        14 ~~~~~--rILDiGcGtG~~~~~la~~~~---~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~   88 (234)
T d1xxla_          14 CRAEH--RVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITC   88 (234)
T ss_dssp             CCTTC--EEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEE
T ss_pred             CCCCC--EEEEeCCcCcHHHHHHHHhCC---eEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeee
Confidence            45553  499999999999999988754   67778866 78876544    343  22222222345432489999999


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ..++....         +...+|-|+.|+|||||++++.+
T Consensus        89 ~~~l~~~~---------d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          89 RYAAHHFS---------DVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             ESCGGGCS---------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eceeeccc---------CHHHHHHHHHHeeCCCcEEEEEE
Confidence            99888543         35789999999999999999864

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.77  E-value=1.1e-09  Score=97.18  Aligned_cols=93  Identities=19%  Similarity=0.300  Sum_probs=69.8

Q ss_pred             EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcccc-ccccccccCCCCCCccccccccC-ccccccCCC
Q 017068          227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIG-VYHDWCEPFSTYPRTYDLIHVSG-IESLIKNPG  303 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig-~~~~w~~~f~typrtyDliH~~~-~~~~~~~~~  303 (378)
                      .|||+|||+|.++-.|.+..-   .|.-.|.+ .+++.+-++|..- +..+- +.+|..+.+||+|-|.+ ++....   
T Consensus        45 ~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~~-~~l~~~~~~fD~ii~~~~~~~~~~---  117 (246)
T d2avna1          45 RVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKA-EDLPFPSGAFEAVLALGDVLSYVE---  117 (246)
T ss_dssp             EEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCT-TSCCSCTTCEEEEEECSSHHHHCS---
T ss_pred             EEEEECCCCchhcccccccce---EEEEeecccccccccccccccccccccc-cccccccccccceeeecchhhhhh---
Confidence            589999999999999998875   56777766 8999999998732 22232 33543348999999854 555433   


Q ss_pred             CCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          304 SNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       304 ~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                            +...+|-|+-|+|+|||.+++..
T Consensus       118 ------d~~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         118 ------NKDKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             ------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ------hHHHHHHHHHhhcCcCcEEEEEE
Confidence                  23567889999999999999974

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.77  E-value=3.1e-09  Score=98.77  Aligned_cols=75  Identities=17%  Similarity=0.218  Sum_probs=63.5

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY   80 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~   80 (378)
                      .|+++|     .|+.+++.|+++    +..+.+.++|++.+|+++ +||+|+|..+++|++++. .+|+++.|+|||||.
T Consensus        54 ~v~giD-----~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~-~fD~v~~~~~l~~~~d~~-~~l~~~~~~LkpgG~  126 (281)
T d2gh1a1          54 KYTGID-----SGETLLAEARELFRLLPYDSEFLEGDATEIELND-KYDIAICHAFLLHMTTPE-TMLQKMIHSVKKGGK  126 (281)
T ss_dssp             EEEEEE-----CCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSS-CEEEEEEESCGGGCSSHH-HHHHHHHHTEEEEEE
T ss_pred             EEEEEe-----cchhHhhhhhcccccccccccccccccccccccC-CceEEEEehhhhcCCCHH-HHHHHHHHHcCcCcE
Confidence            356655     457899988876    455778899999999974 799999999999998877 999999999999999


Q ss_pred             EEEEcC
Q 017068           81 LVISGP   86 (378)
Q Consensus        81 lvis~p   86 (378)
                      +++..|
T Consensus       127 lii~~~  132 (281)
T d2gh1a1         127 IICFEP  132 (281)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            998776

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.76  E-value=7e-10  Score=97.20  Aligned_cols=115  Identities=18%  Similarity=0.250  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc-cc-ccccccc
Q 017068          206 RRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IG-VYHDWCE  278 (378)
Q Consensus       206 ~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig-~~~~w~~  278 (378)
                      +.++......+.+.+..+.  .|||+|||+|.++..|.+.+.   +|+-.|.+ +++..+-++    |. +- +..|- +
T Consensus        21 ~~~~~~~~~~~~~~l~~~~--~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~-~   94 (226)
T d1ve3a1          21 RSRIETLEPLLMKYMKKRG--KVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDA-R   94 (226)
T ss_dssp             HHHHHHHHHHHHHSCCSCC--EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT-T
T ss_pred             HHHHHHHHHHHHHhcCCCC--EEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhcccccccccccccc-c
Confidence            3444444443434454442  589999999999999988876   67788876 888777655    32 11 11111 1


Q ss_pred             cCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          279 PFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       279 ~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      .++....+||+|.|..++..+.       ..++..+|-|+-|+|+|||.+++...
T Consensus        95 ~l~~~~~~fD~I~~~~~l~~~~-------~~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1          95 KLSFEDKTFDYVIFIDSIVHFE-------PLELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             SCCSCTTCEEEEEEESCGGGCC-------HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccCcCceEEEEecchhhCC-------hhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence            2343348999999999888653       12356789999999999999998753

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2.5e-09  Score=95.33  Aligned_cols=72  Identities=19%  Similarity=0.164  Sum_probs=62.0

Q ss_pred             CChHHHHHHHHHcC----C-CeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALERG----I-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~erg----~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |+|+.||+.|+++.    . .+.+..+|++.+++++++||+|+|..+++|+++++ ..+++++.|+|||||.++++.+
T Consensus        90 D~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~  167 (222)
T d2ex4a1          90 DITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN  167 (222)
T ss_dssp             ESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ecCHHHhhccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence            55579999999873    2 24688999999999999999999999999998764 4799999999999999999754

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.71  E-value=1.3e-09  Score=100.65  Aligned_cols=94  Identities=23%  Similarity=0.311  Sum_probs=68.8

Q ss_pred             eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh----cc---ccc-cccccccCCCCCCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GL---IGV-YHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~-~~~w~~~f~typrtyDliH~~~~  295 (378)
                      ..|||+|||+|+++..|.++ +.   +|+-+|.+ .++..+-++    |+   +-+ ..|+++ +|.-+.+||+|.|..+
T Consensus        69 ~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~-l~~~~~sfD~V~~~~~  144 (282)
T d2o57a1          69 AKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE-IPCEDNSYDFIWSQDA  144 (282)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS-CSSCTTCEEEEEEESC
T ss_pred             CEEEEeCCCCcHHHhhhhccCCc---EEEEEeccchhhhhhhccccccccccccccccccccc-ccccccccchhhccch
Confidence            58999999999999999765 44   45666655 677665554    44   222 234433 4433489999999999


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      |.++.         +...+|-|+.|+|||||.+++.+
T Consensus       145 l~h~~---------d~~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         145 FLHSP---------DKLKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             GGGCS---------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhcc---------CHHHHHHHHHHhcCCCcEEEEEE
Confidence            88764         23678999999999999999974

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.71  E-value=1.3e-08  Score=90.91  Aligned_cols=76  Identities=16%  Similarity=0.131  Sum_probs=63.5

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcCC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHh-hcccCCcEEE
Q 017068            5 NILTLSFAPRDSHKAQIQFALERGI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVD-RLLRPGGYLV   82 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~-RVLkPGG~lv   82 (378)
                      +|++++++     +++++.|+++.. .+.+..++.+.+++ +++||+|+|..+++|+.++. .+|+|+. |+|||||+++
T Consensus        44 ~v~giD~s-----~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~d~~-~~l~~i~~~~Lk~gG~l~  116 (225)
T d2p7ia1          44 DITCVEAS-----EEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHIDDPV-ALLKRINDDWLAEGGRLF  116 (225)
T ss_dssp             CEEEEESC-----HHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGCSSHH-HHHHHHHHTTEEEEEEEE
T ss_pred             eEEEEeCc-----HHHhhhhhccccccccccccccccccc-ccccccccccceeEecCCHH-HHHHHHHHHhcCCCceEE
Confidence            56666654     699999998843 36677888888876 58999999999999998777 9999998 8999999999


Q ss_pred             EEcCC
Q 017068           83 ISGPP   87 (378)
Q Consensus        83 is~pp   87 (378)
                      ++.|.
T Consensus       117 i~~pn  121 (225)
T d2p7ia1         117 LVCPN  121 (225)
T ss_dssp             EEEEC
T ss_pred             EEeCC
Confidence            98873

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.67  E-value=1.1e-08  Score=91.56  Aligned_cols=71  Identities=20%  Similarity=0.256  Sum_probs=56.8

Q ss_pred             CChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccCC--hHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY--NATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~--~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.|++|++.|+++    +.++.+.++|++++|++ +.||+|+|....+++.+.  ..++|+++.|+|||||+|++..+
T Consensus        70 D~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~  146 (251)
T d1wzna1          70 DLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (251)
T ss_dssp             ESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeccccccccccccccccccchheehhhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            4556888888875    66788999999999998 589999998644444332  24899999999999999999765

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.64  E-value=1.1e-08  Score=93.82  Aligned_cols=72  Identities=15%  Similarity=0.303  Sum_probs=62.1

Q ss_pred             CChHHHHHHHHHcC--CC-eEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALERG--IP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~erg--~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.|+.|++.|+++.  .+ +.+.+++.+.+++++++||+|+|..+++|+++++ ..+|+++.|+|||||++++..+
T Consensus       123 D~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~  198 (254)
T d1xtpa_         123 EPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             ESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence            55679999999873  23 4678899999999999999999999999998764 4789999999999999999754

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=3.8e-09  Score=94.11  Aligned_cols=121  Identities=19%  Similarity=0.262  Sum_probs=83.2

Q ss_pred             CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc--ccccc-cccccCCCCCCccccccccCc
Q 017068          224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL--IGVYH-DWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig~~~-~w~~~f~typrtyDliH~~~~  295 (378)
                      .-..|||+|||+|.++..|+.+...  .|.-+|-+ ++|..+-++    |.  +-.++ |. +.++.-+.+||+|.|..+
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~-~~~~~~~~~fD~I~~~~~  136 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL-QDFTPEPDSYDVIWIQWV  136 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCS--EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG-GGCCCCSSCEEEEEEESC
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcCC--EEEEeecCHHHhhccccccccccccccccccccc-cccccccccccccccccc
Confidence            3467999999999999887655332  45556765 888776555    22  11111 22 234544589999999999


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH---------------HHHHHHHHHHhcCCceEEEe
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP---------------EVIDKVSRIANTVRWTAAVH  354 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~---------------~~~~~~~~~~~~l~W~~~~~  354 (378)
                      +..+.      + -.+..+|-|+-|+|+|||.+++.+..               -..++++++++.--+++...
T Consensus       137 l~h~~------~-~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~  203 (222)
T d2ex4a1         137 IGHLT------D-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE  203 (222)
T ss_dssp             GGGSC------H-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred             cccch------h-hhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEE
Confidence            88764      1 11346899999999999999997421               14677888888777776643

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.62  E-value=1.8e-08  Score=91.49  Aligned_cols=72  Identities=21%  Similarity=0.263  Sum_probs=59.1

Q ss_pred             CChHHHHHHHHHc----CC--CeEEEEcccCCCCC-CCCceeEEEecCccccccCCh---HHHHHHHhhcccCCcEEEEE
Q 017068           15 DSHKAQIQFALER----GI--PAFVAMLGTRRLPF-PAFSFDIVHCSRCLIPFTAYN---ATYLIEVDRLLRPGGYLVIS   84 (378)
Q Consensus        15 D~se~~vq~A~er----g~--~~~~~v~dae~LPf-pd~SFD~V~cs~~l~hw~~~~---~~~L~Ev~RVLkPGG~lvis   84 (378)
                      |.|+.|++.|++|    +.  .+.+.++|+...++ .+++||+|+|..+++|..++.   ..+++++.|+|||||+|+++
T Consensus        54 D~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          54 DIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             ESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            4457899999876    22  46788899888877 578999999999999886653   37899999999999999998


Q ss_pred             cC
Q 017068           85 GP   86 (378)
Q Consensus        85 ~p   86 (378)
                      .+
T Consensus       134 ~~  135 (252)
T d1ri5a_         134 VP  135 (252)
T ss_dssp             EE
T ss_pred             ec
Confidence            76

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=3.3e-09  Score=95.81  Aligned_cols=97  Identities=12%  Similarity=0.136  Sum_probs=70.7

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccC-CCeeEEEeccCCCC-cchHHHHhh----cc---c-cccccccccCCCCCCcccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKS-STLSVIYDR----GL---I-GVYHDWCEPFSTYPRTYDL  289 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~-~~vwvmnv~p~~~~-~~l~~i~eR----Gl---i-g~~~~w~~~f~typrtyDl  289 (378)
                      +..|  -.|||+|||+|+++..|.. .+..|   +-+|.+ .++..+-++    |+   + -...|..+.+  .+.+||+
T Consensus        31 l~pg--~~VLDiGCG~G~~~~~la~~~~~~v---~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~--~~~~fD~  103 (245)
T d1nkva_          31 MKPG--TRILDLGSGSGEMLCTWARDHGITG---TGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV--ANEKCDV  103 (245)
T ss_dssp             CCTT--CEEEEETCTTCHHHHHHHHHTCCEE---EEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC--CSSCEEE
T ss_pred             CCCC--CEEEEEcCCCCHHHHHHHHhcCCEE---EEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc--ccCceeE
Confidence            4555  4699999999999998875 36644   444545 777665554    65   2 2344555432  3589999


Q ss_pred             ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      |+|..++..+.         +...+|-||.|+|||||.+++.+
T Consensus       104 v~~~~~~~~~~---------d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_         104 AACVGATWIAG---------GFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             EEEESCGGGTS---------SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             EEEEehhhccC---------CHHHHHHHHHHHcCcCcEEEEEe
Confidence            99999988664         34689999999999999999974

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.61  E-value=5.3e-09  Score=93.47  Aligned_cols=91  Identities=22%  Similarity=0.332  Sum_probs=65.7

Q ss_pred             EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc--cc-ccccccccCCCCCCccccccccCccccccCC
Q 017068          227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL--IG-VYHDWCEPFSTYPRTYDLIHVSGIESLIKNP  302 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl--ig-~~~~w~~~f~typrtyDliH~~~~~~~~~~~  302 (378)
                      +|||+|||+|.|+..|.+..-   .|+-.|.+ +.++.+-+|.-  +- +..+.. .++ .+.+||+|.|..+|.+..  
T Consensus        23 ~VLDiGcG~G~~~~~l~~~g~---~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~-~~~-~~~~fD~I~~~~vleh~~--   95 (225)
T d2p7ia1          23 NLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFE-DAQ-LPRRYDNIVLTHVLEHID--   95 (225)
T ss_dssp             CEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGG-GCC-CSSCEEEEEEESCGGGCS--
T ss_pred             cEEEEeCCCcHHHHHHHHcCC---eEEEEeCcHHHhhhhhccccccccccccccc-ccc-cccccccccccceeEecC--
Confidence            499999999999999987643   45556655 77777755532  11 222333 233 368999999999998764  


Q ss_pred             CCCCCCCCccceeeee-cccccCCCeEEEe
Q 017068          303 GSNKNSCSLVDLMVEM-DRMLRPEGTVVVR  331 (378)
Q Consensus       303 ~~~~~~c~~~~~l~Em-DRiLRPgG~~ii~  331 (378)
                             +...+|.|+ +|+|+|||++++.
T Consensus        96 -------d~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          96 -------DPVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             -------SHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             -------CHHHHHHHHHHHhcCCCceEEEE
Confidence                   235778888 5999999999996

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.6e-08  Score=89.34  Aligned_cols=121  Identities=9%  Similarity=0.013  Sum_probs=77.6

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc------------------ccccc-----------
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL------------------IGVYH-----------  274 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl------------------ig~~~-----------  274 (378)
                      =..|||+|||.|.++..+......  +|+-.|-+ ++++.+-++--                  -|.+.           
T Consensus        52 g~~vLDlGcG~G~~~~~~~~~~~~--~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (257)
T d2a14a1          52 GDTLIDIGSGPTIYQVLAACDSFQ--DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  129 (257)
T ss_dssp             EEEEEESSCTTCCGGGTTGGGTEE--EEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCEEEEECCCCCHhHHHHhccccC--cEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence            457999999999998777765542  56777755 77766644310                  01110           


Q ss_pred             --------c--ccccCCCCC-CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH---------
Q 017068          275 --------D--WCEPFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP---------  334 (378)
Q Consensus       275 --------~--w~~~f~typ-rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~---------  334 (378)
                              +  ......+++ .+||+|.+..++....     ..+-.+..++-+|-|+|||||++|+.+-.         
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~-----~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~  204 (257)
T d2a14a1         130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECAC-----CSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGK  204 (257)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC-----SSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETT
T ss_pred             hhhcccccccccccccccccCCcccEEeehhhHHHhc-----ccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecc
Confidence                    0  111122333 7999999988887653     11123346888999999999999997521         


Q ss_pred             -------HHHHHHHHHHhcCCceEE
Q 017068          335 -------EVIDKVSRIANTVRWTAA  352 (378)
Q Consensus       335 -------~~~~~~~~~~~~l~W~~~  352 (378)
                             -..+.++++++.--+++.
T Consensus       205 ~~~~~~~~~~~~~~~~l~~aGf~v~  229 (257)
T d2a14a1         205 REFSCVALEKGEVEQAVLDAGFDIE  229 (257)
T ss_dssp             EEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred             ccccccCCCHHHHHHHHHHCCCEEE
Confidence                   135677777777667653

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.58  E-value=4.3e-09  Score=94.18  Aligned_cols=99  Identities=16%  Similarity=0.190  Sum_probs=71.4

Q ss_pred             CCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cccc--ccccccccCCCCCCcccccccc
Q 017068          221 GTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG--VYHDWCEPFSTYPRTYDLIHVS  293 (378)
Q Consensus       221 ~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig--~~~~w~~~f~typrtyDliH~~  293 (378)
                      .....+.|||+|||+|.++..|.++..   +|+-+|.+ +++..+-++    |+-.  ...|. +.+ +++.+||+|.|.
T Consensus        38 ~~~~~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~-~~l-~~~~~fD~I~~~  112 (251)
T d1wzna1          38 AKREVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV-LEI-AFKNEFDAVTMF  112 (251)
T ss_dssp             CSSCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCG-GGC-CCCSCEEEEEEC
T ss_pred             cCCCCCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheehhh-hhc-ccccccchHhhh
Confidence            444567899999999999999988876   77777876 888766655    4421  12233 234 356899999996


Q ss_pred             C-ccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          294 G-IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       294 ~-~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      . .|....       ..+....|-++-|+|+|||++|+.
T Consensus       113 ~~~~~~~~-------~~~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1         113 FSTIMYFD-------EEDLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             SSGGGGSC-------HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhhcCC-------hHHHHHHHHHHHHHcCCCcEEEEE
Confidence            4 455432       234567899999999999999984

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.57  E-value=1.1e-08  Score=91.08  Aligned_cols=96  Identities=11%  Similarity=0.172  Sum_probs=74.9

Q ss_pred             EEEecCCcceeeeeeccC----CCeeEEEeccCCCC-cchHHHHhh----ccccccccccccCCCCC-CccccccccCcc
Q 017068          227 NIMDMNAFFGGFAAALTS----DPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYP-RTYDLIHVSGIE  296 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~----~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~w~~~f~typ-rtyDliH~~~~~  296 (378)
                      .|||+|||+|..+..|..    ...   +|+-.|.+ .+|+.+-++    +....++-.+..+..+| ..+|.+.|..++
T Consensus        42 ~vLDlGCGtG~~~~~l~~~~~~~~~---~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l  118 (225)
T d1im8a_          42 NVYDLGCSRGAATLSARRNINQPNV---KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL  118 (225)
T ss_dssp             EEEEESCTTCHHHHHHHHTCCCSSC---EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCG
T ss_pred             EEEEeccchhhHHHHHHHhhcCCCC---ceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeec
Confidence            699999999998877753    344   77888877 999988765    56666666666666666 789999999888


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ....       .-+...+|-||-|.|+|||.+|+.+
T Consensus       119 ~~~~-------~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         119 QFLP-------PEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             GGSC-------GGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccC-------hhhHHHHHHHHHHhCCCCceeeccc
Confidence            7653       2234579999999999999999985

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.56  E-value=3.5e-08  Score=87.71  Aligned_cols=73  Identities=16%  Similarity=0.102  Sum_probs=54.6

Q ss_pred             CCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccCC-hHHHHHHHhhcccCCcEEEEEcC
Q 017068           14 RDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~-~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .|.|+.|++.|+++    +....+....+..++++.+.||+|+|+.+++|++.. ...+|+|++|+|||||.|+++.+
T Consensus        71 iD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~  148 (225)
T d1im8a_          71 IDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK  148 (225)
T ss_dssp             ECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccc
Confidence            45557999999986    233333333344456677789999999999887543 35899999999999999999865

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=6.5e-09  Score=96.03  Aligned_cols=92  Identities=13%  Similarity=0.123  Sum_probs=63.5

Q ss_pred             CCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhhcc-ccccccccccCCCCCCccccccccCcccc
Q 017068          223 PAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDRGL-IGVYHDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eRGl-ig~~~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      ..-..|||+|||.|.|+.+|.+.  ++   +++-.|.+ .++..+-+|+- +.....=.+.+|.-+.+||+|.+...+. 
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~---~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~-  158 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC-  158 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC-
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCC---EEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHH-
Confidence            34568999999999999998754  44   44555655 88888877754 2211111233444458999998753322 


Q ss_pred             ccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                                     .+-|+.|+|||||++++...
T Consensus       159 ---------------~~~e~~rvLkpgG~l~~~~p  178 (268)
T d1p91a_         159 ---------------KAEELARVVKPGGWVITATP  178 (268)
T ss_dssp             ---------------CHHHHHHHEEEEEEEEEEEE
T ss_pred             ---------------HHHHHHHHhCCCcEEEEEee
Confidence                           24689999999999999853

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.50  E-value=1.1e-08  Score=95.75  Aligned_cols=98  Identities=11%  Similarity=0.065  Sum_probs=69.3

Q ss_pred             eeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHH----HhhccccccccccccCCCCCCccccccccCcccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVI----YDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i----~eRGlig~~~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      =-.|||+|||.|+|+..+..+ +.   +|+-.+-+ +|+..+    .+.|+......-..-+...|.+||.|-+..+|..
T Consensus        53 g~~VLDiGCG~G~~a~~~a~~~g~---~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~si~~~eh  129 (280)
T d2fk8a1          53 GMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEH  129 (280)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred             CCEEEEecCCchHHHHHHHHhCce---eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhHhhHHHH
Confidence            346999999999999888754 65   34444444 666554    4457754333333333345789999999999987


Q ss_pred             ccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ..       .-+...++-++.|+|+|||.++|..
T Consensus       130 ~~-------~~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         130 FG-------HENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             TC-------GGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hh-------hhhHHHHHHHHHhccCCCceEEEEE
Confidence            63       2245678999999999999999863

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.47  E-value=2.9e-08  Score=92.10  Aligned_cols=107  Identities=11%  Similarity=0.117  Sum_probs=71.0

Q ss_pred             HHHHhhhh-cCCCCeeEEEecCCcceeeeeeccC---CCeeEEEeccCCCC-cchHHHHhh----cc-cc-ccccccccC
Q 017068          212 YKNTLNVK-LGTPAIRNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYDR----GL-IG-VYHDWCEPF  280 (378)
Q Consensus       212 Y~~~~~~~-~~~~~iR~vlDm~ag~g~faa~L~~---~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig-~~~~w~~~f  280 (378)
                      |.+.|... .+-.+-++|||+|||+|.++..|.+   ..-   .|+-.|.+ .++..+-++    |+ +- ...|.. .+
T Consensus        14 ~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~-~~   89 (281)
T d2gh1a1          14 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT-EI   89 (281)
T ss_dssp             HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTT-TC
T ss_pred             HHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCC---EEEEEecchhHhhhhhcccccccccccccccccc-cc
Confidence            45444322 2334557899999999999877764   333   34555655 666655443    33 11 122333 23


Q ss_pred             CCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          281 STYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       281 ~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      + ++.+||+|+|..++.+..         +...+|-||-|+|+|||++++.+
T Consensus        90 ~-~~~~fD~v~~~~~l~~~~---------d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1          90 E-LNDKYDIAICHAFLLHMT---------TPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             C-CSSCEEEEEEESCGGGCS---------SHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             c-ccCCceEEEEehhhhcCC---------CHHHHHHHHHHHcCcCcEEEEEE
Confidence            3 467899999999988664         23578999999999999999875

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.46  E-value=9.1e-09  Score=94.51  Aligned_cols=127  Identities=14%  Similarity=0.101  Sum_probs=83.5

Q ss_pred             CCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----ccccccccccccCCCCCCccccccccCc
Q 017068          221 GTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYPRTYDLIHVSGI  295 (378)
Q Consensus       221 ~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~w~~~f~typrtyDliH~~~~  295 (378)
                      ....-.+|||+|||.|.++..|+.+..-  +|.-+|.+ .+|..+-++    ..+-.++.=-+.|+.-+.+||+|.|.++
T Consensus        90 ~~~~~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~v  167 (254)
T d1xtpa_          90 PGHGTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWT  167 (254)
T ss_dssp             TTCCCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESC
T ss_pred             CCCCCCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeecc
Confidence            3445678999999999999988744211  34555655 777766544    2222222212234444589999999999


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH----------------HHHHHHHHHHhcCCceEEEecC
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----------------EVIDKVSRIANTVRWTAAVHDK  356 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~----------------~~~~~~~~~~~~l~W~~~~~~~  356 (378)
                      |.++.      + -.+..+|-++-|+|+|||+++|.+..                -..+.+++++++--+++.....
T Consensus       168 l~hl~------d-~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~  237 (254)
T d1xtpa_         168 AIYLT------D-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF  237 (254)
T ss_dssp             GGGSC------H-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred             ccccc------h-hhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEe
Confidence            98775      1 12346799999999999999997521                1245677777766677665433

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.44  E-value=1.3e-07  Score=82.43  Aligned_cols=71  Identities=18%  Similarity=0.338  Sum_probs=57.0

Q ss_pred             CChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |+|+.|++.|+++    +++ +.+...|...+++ +++||+|+|..+++|+++.. ..+++++.|+|||||++++...
T Consensus        59 D~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1          59 DKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             ESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            4456888876653    555 5677888888886 68999999999999987654 5899999999999999998643

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.44  E-value=2.7e-08  Score=89.41  Aligned_cols=95  Identities=20%  Similarity=0.275  Sum_probs=69.5

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc-ccc-cccccccCCCCCCcccccccc-Cccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IGV-YHDWCEPFSTYPRTYDLIHVS-GIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig~-~~~w~~~f~typrtyDliH~~-~~~~  297 (378)
                      ++|||+|||+|.++..|.++..   .|+-.|.+ .+|..+-+|    |+ +-. ..|..+ |+ .+++||+|-|. ..|.
T Consensus        39 ~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~i~~~~~~~~  113 (246)
T d1y8ca_          39 DDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN-LN-INRKFDLITCCLDSTN  113 (246)
T ss_dssp             TEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG-CC-CSCCEEEEEECTTGGG
T ss_pred             CeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceeeccchhh-hc-ccccccccceeeeeee
Confidence            5799999999999999998876   67888877 889887765    43 221 223433 33 36899999875 4555


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      .+.      +.-.+..+|-+|-|.|+|||.+|+.
T Consensus       114 ~~~------~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_         114 YII------DSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             GCC------SHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ccC------CHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            553      2223456899999999999999974

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.44  E-value=1.1e-08  Score=89.53  Aligned_cols=97  Identities=18%  Similarity=0.265  Sum_probs=71.4

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHH----hhccc---cccccccccCCCCCCcccccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY----DRGLI---GVYHDWCEPFSTYPRTYDLIH  291 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~----eRGli---g~~~~w~~~f~typrtyDliH  291 (378)
                      +..|   .|||+|||.|.++.+|.++..   .|+-.|-+ .+|+.+-    +.|+-   ....|.++.  .++.+||+|.
T Consensus        29 ~~~g---rvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~--~~~~~fD~I~  100 (198)
T d2i6ga1          29 VAPG---RTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTL--TFDGEYDFIL  100 (198)
T ss_dssp             SCSC---EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTC--CCCCCEEEEE
T ss_pred             CCCC---cEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhhccccchhhhheecccc--cccccccEEE
Confidence            4555   499999999999999998876   56666766 6676543    34442   234444443  3468999999


Q ss_pred             ccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      |..+|....       .-....+|-++-|+|+|||++++.
T Consensus       101 ~~~~~~~~~-------~~~~~~~l~~~~~~L~pgG~~~~~  133 (198)
T d2i6ga1         101 STVVMMFLE-------AQTIPGLIANMQRCTKPGGYNLIV  133 (198)
T ss_dssp             EESCGGGSC-------TTHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EeeeeecCC-------HHHHHHHHHHHHHHcCCCcEEEEE
Confidence            999988663       223467999999999999999986

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=3.2e-09  Score=98.59  Aligned_cols=103  Identities=14%  Similarity=0.205  Sum_probs=70.3

Q ss_pred             CCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cccccc-------cccc---ccCCCCCCcc
Q 017068          223 PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVY-------HDWC---EPFSTYPRTY  287 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~-------~~w~---~~f~typrty  287 (378)
                      ...++|||+|||+|.++..|.++..   +|+-.|.+ .+|..+-++    +....+       -+|.   ..+ ++..+|
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f  130 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV-PAGDGF  130 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS-CCTTCE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccccc-CCCCCc
Confidence            3457899999999999999998875   77888877 888776554    332111       1221   122 234789


Q ss_pred             ccccccC-ccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          288 DLIHVSG-IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       288 DliH~~~-~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      |+|.|.+ +|.++.++.  .+.-.+..+|-||-|+|+|||.+|+.
T Consensus       131 d~v~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~li~~  173 (292)
T d1xvaa_         131 DAVICLGNSFAHLPDSK--GDQSEHRLALKNIASMVRPGGLLVID  173 (292)
T ss_dssp             EEEEECSSCGGGSCCTT--SSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eEEEEecCchhhcCCcc--cChHHHHHHHHHHHHHcCcCcEEEEe
Confidence            9999864 566654110  11122456899999999999999995

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.44  E-value=1.2e-07  Score=85.00  Aligned_cols=71  Identities=18%  Similarity=0.286  Sum_probs=56.9

Q ss_pred             CCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecC-ccccccCCh--HHHHHHHhhcccCCcEEEEEc
Q 017068           14 RDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSR-CLIPFTAYN--ATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~-~l~hw~~~~--~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      .|.|++|++.|+++    +.++.+..+|+..++++ ++||+|+|.. ++.|+...+  ..+++++.|.|||||.|++..
T Consensus        65 vD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  142 (246)
T d1y8ca_          65 VDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI  142 (246)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             eccchhhhhhccccccccCccceeeccchhhhccc-ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence            35668999998875    67788999999988874 6899999874 555665433  479999999999999999864

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.39  E-value=4.4e-08  Score=92.28  Aligned_cols=107  Identities=10%  Similarity=0.087  Sum_probs=71.3

Q ss_pred             cCCCCeeEEEecCCcceeeeeecc-CCCeeEEEeccCCCC-cchHH----HHhhccccccccccccCCCCCCcccccccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALT-SDPVWVMNVVPARKS-STLSV----IYDRGLIGVYHDWCEPFSTYPRTYDLIHVS  293 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~-~~~vwvmnv~p~~~~-~~l~~----i~eRGlig~~~~w~~~f~typrtyDliH~~  293 (378)
                      ++.|  -.|||+|||.||++..+. ..++   +|+-.+.+ .|+..    +.+.||....+--..-++..+.+||-|-+-
T Consensus        59 l~~G--~~VLDiGCG~G~~~~~~a~~~g~---~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i~si  133 (291)
T d1kpia_          59 LEPG--MTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSL  133 (291)
T ss_dssp             CCTT--CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEE
T ss_pred             CCCC--CEEEEecCcchHHHHHHHHhcCc---ceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccceEeec
Confidence            5555  369999999999998886 4566   33333334 55543    455577554333333344456899999999


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      ..|.+..++......-+...++-++.|+|+|||.+++.
T Consensus       134 e~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~  171 (291)
T d1kpia_         134 GAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH  171 (291)
T ss_dssp             SCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             hhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence            98887642221112234467899999999999999986

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=6.5e-08  Score=88.61  Aligned_cols=74  Identities=14%  Similarity=-0.026  Sum_probs=57.2

Q ss_pred             CCCCChHHHHHHHHHcC-----CC-eE--EEEcccC------CCCCCCCceeEEEecCccccccCChHHHHHHHhhcccC
Q 017068           12 APRDSHKAQIQFALERG-----IP-AF--VAMLGTR------RLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP   77 (378)
Q Consensus        12 ap~D~se~~vq~A~erg-----~~-~~--~~v~dae------~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkP   77 (378)
                      ...|.|+.|++.|+++-     ++ +.  +...+++      ..++++++||+|+|.++++|+.++. .+++++.|+|||
T Consensus        74 ~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~-~~l~~l~~~Lkp  152 (280)
T d1jqea_          74 EVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIP-ATLKFFHSLLGT  152 (280)
T ss_dssp             EEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHH-HHHHHHHHTEEE
T ss_pred             EEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCCceeEEEEccceecCCCHH-HHHHHHHhhCCC
Confidence            34477899999998862     11 22  2333222      3578999999999999999988777 999999999999


Q ss_pred             CcEEEEEcC
Q 017068           78 GGYLVISGP   86 (378)
Q Consensus        78 GG~lvis~p   86 (378)
                      ||++++..+
T Consensus       153 gG~l~i~~~  161 (280)
T d1jqea_         153 NAKMLIIVV  161 (280)
T ss_dssp             EEEEEEEEE
T ss_pred             CCEEEEEEe
Confidence            999998765

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=4.1e-08  Score=89.97  Aligned_cols=96  Identities=15%  Similarity=0.235  Sum_probs=65.0

Q ss_pred             EEEecCCcceeeeeeccCC-----CeeEEEeccCCCC-cchHHHHhh-----cccccccccccc---------C-CCCCC
Q 017068          227 NIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKS-STLSVIYDR-----GLIGVYHDWCEP---------F-STYPR  285 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~-----~vwvmnv~p~~~~-~~l~~i~eR-----Glig~~~~w~~~---------f-~typr  285 (378)
                      +|||+|||+|.|+..|++.     +-....++-+|.+ .+++.+-+|     .+-.+-.+|...         . +.-+.
T Consensus        43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (280)
T d1jqea_          43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ  122 (280)
T ss_dssp             EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred             eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence            5999999999997776532     1122355666766 777766655     222222222211         1 12248


Q ss_pred             ccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          286 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       286 tyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      +||+|+|.++|....         ++...|-+|.|+|+|||+++|.
T Consensus       123 ~fD~I~~~~~l~~~~---------d~~~~l~~l~~~LkpgG~l~i~  159 (280)
T d1jqea_         123 KWDFIHMIQMLYYVK---------DIPATLKFFHSLLGTNAKMLII  159 (280)
T ss_dssp             CEEEEEEESCGGGCS---------CHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ceeEEEEccceecCC---------CHHHHHHHHHhhCCCCCEEEEE
Confidence            999999999998664         3468999999999999999876

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.35  E-value=1.6e-08  Score=92.17  Aligned_cols=101  Identities=26%  Similarity=0.390  Sum_probs=68.9

Q ss_pred             hcCCCCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCCcch----HHHHhhcccc----ccccccccCCCCCCccc
Q 017068          219 KLGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTL----SVIYDRGLIG----VYHDWCEPFSTYPRTYD  288 (378)
Q Consensus       219 ~~~~~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~~~l----~~i~eRGlig----~~~~w~~~f~typrtyD  288 (378)
                      .+..+..+.|||+|||+|.++.+|..+  .+-+   +-.|.+.++    +.+.+.|+..    +-+|.   |...|..||
T Consensus        75 ~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~---~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~---~~~~~~~~D  148 (253)
T d1tw3a2          75 AYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSA---TVLEMAGTVDTARSYLKDEGLSDRVDVVEGDF---FEPLPRKAD  148 (253)
T ss_dssp             HSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEE---EEEECTTHHHHHHHHHHHTTCTTTEEEEECCT---TSCCSSCEE
T ss_pred             hcCCccCCEEEEeCCCCCHHHHHHHHhcceeEE---EEccCHHHHHHHHHHHHHhhcccchhhccccc---hhhcccchh
Confidence            456678999999999999999999743  3322   112323344    3344556532    22343   334467899


Q ss_pred             cccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          289 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       289 liH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      +|.+..++..|.+     .  ....+|-|+-|.|+|||.++|.|
T Consensus       149 ~v~~~~vlh~~~d-----~--~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         149 AIILSFVLLNWPD-----H--DAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             EEEEESCGGGSCH-----H--HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             heeeccccccCCc-----h--hhHHHHHHHHHhcCCCcEEEEEe
Confidence            9999999988741     1  12468999999999999999975

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.30  E-value=2.2e-08  Score=90.82  Aligned_cols=99  Identities=15%  Similarity=0.075  Sum_probs=68.1

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-cc-------ccccccccCCC-CCCccccccccCc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-IG-------VYHDWCEPFST-YPRTYDLIHVSGI  295 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig-------~~~~w~~~f~t-yprtyDliH~~~~  295 (378)
                      .+|||+|||+|+++..+.+.+.-  +|+-.|.+ .+|..+-+|-. .+       ...|-. ..+. ...+||+|.|...
T Consensus        26 ~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~-~~~~~~~~~fD~V~~~~~  102 (252)
T d1ri5a_          26 DSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY-GRHMDLGKEFDVISSQFS  102 (252)
T ss_dssp             CEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTT-TSCCCCSSCEEEEEEESC
T ss_pred             CEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchh-hhcccccccceEEEEcce
Confidence            47999999999998888765542  45677766 88888877632 11       112221 1122 2369999999887


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      +.+.-     ...-.+..+|-||.|+|+|||++|+.-
T Consensus       103 l~~~~-----~~~~~~~~~l~~i~~~Lk~gG~~i~~~  134 (252)
T d1ri5a_         103 FHYAF-----STSESLDIAQRNIARHLRPGGYFIMTV  134 (252)
T ss_dssp             GGGGG-----SSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eeecC-----CCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence            77653     112234578999999999999999863

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.24  E-value=1.4e-07  Score=82.53  Aligned_cols=135  Identities=17%  Similarity=0.167  Sum_probs=83.2

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cccc-----ccccccccCCCCCCcccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG-----VYHDWCEPFSTYPRTYDL  289 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig-----~~~~w~~~f~typrtyDl  289 (378)
                      +....-.+|||+|||+|.++.+|....-   +|.-.|-+ ..+..+-++    |+-.     +..|+.+.+  .+.+||+
T Consensus        48 l~~~~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~--~~~~fD~  122 (194)
T d1dusa_          48 VVVDKDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV--KDRKYNK  122 (194)
T ss_dssp             CCCCTTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC--TTSCEEE
T ss_pred             CCcCCCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhh--ccCCceE
Confidence            4444557899999999999999886544   66666765 666655432    4321     234555433  3589999


Q ss_pred             ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC-CHHHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEE
Q 017068          290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILV  368 (378)
Q Consensus       290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-~~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~  368 (378)
                      |-|+-.|....        -.+..++-++.|+|+|||.+++.- ....-+.+.+..+..-+++......    +.=+||-
T Consensus       123 Ii~~~p~~~~~--------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~----~gf~vl~  190 (194)
T d1dusa_         123 IITNPPIRAGK--------EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIK----GGYRVLK  190 (194)
T ss_dssp             EEECCCSTTCH--------HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEE----TTEEEEE
T ss_pred             EEEcccEEecc--------hhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEEec----CCcEEEE
Confidence            99986654221        113467888999999999876642 2222233444444444444433221    3557888


Q ss_pred             EEe
Q 017068          369 ATK  371 (378)
Q Consensus       369 ~~K  371 (378)
                      |+|
T Consensus       191 a~K  193 (194)
T d1dusa_         191 SKK  193 (194)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            877

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.21  E-value=2.4e-08  Score=84.77  Aligned_cols=108  Identities=8%  Similarity=-0.001  Sum_probs=75.0

Q ss_pred             HHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-c-------------c--
Q 017068          209 VAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-I-------------G--  271 (378)
Q Consensus       209 v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-i-------------g--  271 (378)
                      +++|+..|.  +..|  ..|||+|||+|.++..|.++..   .|+-.|.+ ++|..+-+|.= .             +  
T Consensus         9 ~~~~~~~l~--~~~~--~rvLd~GCG~G~~a~~la~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~   81 (201)
T d1pjza_           9 LQQYWSSLN--VVPG--ARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG   81 (201)
T ss_dssp             HHHHHHHHC--CCTT--CEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSS
T ss_pred             HHHHHHHcC--CCCC--CEEEEecCcCCHHHHHHHHcCC---ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccc
Confidence            445777665  4444  3899999999999999998887   66777766 88887777531 0             0  


Q ss_pred             ---ccccccccCCCCC-CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          272 ---VYHDWCEPFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       272 ---~~~~w~~~f~typ-rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                         ...++-+ ++.++ .+||+|.+..++....       ..+...++-+|-|.|+|||.+++.
T Consensus        82 ~~~~~~d~~~-l~~~~~~~~D~i~~~~~l~~l~-------~~~~~~~~~~i~~~LkpgG~l~l~  137 (201)
T d1pjza_          82 IEIWCGDFFA-LTARDIGHCAAFYDRAAMIALP-------ADMRERYVQHLEALMPQACSGLLI  137 (201)
T ss_dssp             SEEEEECCSS-STHHHHHSEEEEEEESCGGGSC-------HHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             cceecccccc-cccccccceeEEEEEeeeEecc-------hhhhHHHHHHHHHhcCCCcEEEEE
Confidence               1111211 22233 6899999988887653       122356888999999999998775

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.21  E-value=1.9e-07  Score=86.23  Aligned_cols=117  Identities=13%  Similarity=0.085  Sum_probs=78.9

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hcccc--ccccccccCCCCCCccccccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLIG--VYHDWCEPFSTYPRTYDLIHV  292 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGlig--~~~~w~~~f~typrtyDliH~  292 (378)
                      +..|  ..|||+|||+|.++.++....-   .|+..|.+ ..+..+-+    .|+-.  ...+..+.++  ..+||+|.|
T Consensus       118 ~~~g--~~VLDiGcGsG~l~i~aa~~g~---~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~--~~~fD~V~a  190 (254)
T d2nxca1         118 LRPG--DKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALP--FGPFDLLVA  190 (254)
T ss_dssp             CCTT--CEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGG--GCCEEEEEE
T ss_pred             cCcc--CEEEEcccchhHHHHHHHhcCC---EEEEEECChHHHHHHHHHHHHcCCceeEEecccccccc--ccccchhhh
Confidence            4555  3799999999999988877664   45666755 66765544    35411  1122333333  268999998


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-HHHHHHHHHHHhcCCceEEEec
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWTAAVHD  355 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-~~~~~~~~~~~~~l~W~~~~~~  355 (378)
                      .-+....            ..++=++-|+|+|||++|+++- .+..+.+.+.++..-|+.....
T Consensus       191 ni~~~~l------------~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~  242 (254)
T d2nxca1         191 NLYAELH------------AALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             ECCHHHH------------HHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEE
T ss_pred             ccccccH------------HHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEE
Confidence            6544432            4567789999999999999863 3345677777888888876543

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.20  E-value=4.2e-08  Score=90.08  Aligned_cols=104  Identities=20%  Similarity=0.233  Sum_probs=69.4

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCCcchH----HHHhhccccccccc-cccCCCCCCccccccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLS----VIYDRGLIGVYHDW-CEPFSTYPRTYDLIHV  292 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~~~l~----~i~eRGlig~~~~w-~~~f~typrtyDliH~  292 (378)
                      +..+.++.|||+|||.|.++.+|+++  .+   +++-.|.+..+.    .+.+.|+-.-..-. -..|.+.|..||++.+
T Consensus        77 ~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~---~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~  153 (256)
T d1qzza2          77 YDWSAVRHVLDVGGGNGGMLAAIALRAPHL---RGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLL  153 (256)
T ss_dssp             SCCTTCCEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEE
T ss_pred             CCCccCCEEEEECCCCCHHHHHHHHhhcCc---EEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhc
Confidence            55678999999999999999999854  22   233334344443    34455653211100 1123445678999999


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      .+++..|.     ...|  ..+|-++-|.|+|||.++|.|.
T Consensus       154 ~~vLh~~~-----d~~~--~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         154 SFVLLNWS-----DEDA--LTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             ESCGGGSC-----HHHH--HHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cccccccC-----cHHH--HHHHHHHHhhcCCcceeEEEEe
Confidence            99998874     1122  4788999999999999998753

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.6e-07  Score=87.99  Aligned_cols=114  Identities=14%  Similarity=0.113  Sum_probs=71.4

Q ss_pred             HHHHHHHHHhhhh--cCCCCeeEEEecCCcceeeeeeccCCC-eeEEEeccCCCC-cc---hHHHHhhcc---ccccccc
Q 017068          207 RRVAYYKNTLNVK--LGTPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-ST---LSVIYDRGL---IGVYHDW  276 (378)
Q Consensus       207 ~~v~~Y~~~~~~~--~~~~~iR~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~-~~---l~~i~eRGl---ig~~~~w  276 (378)
                      .|.+.|.+.|...  +..|  .+|||+|||+|.++..++... .-|   ...|.+ ..   ...+.+.|+   |-+.+.-
T Consensus        18 ~r~~~y~~ai~~~~~~~~~--~~VLDiGcG~G~lsl~aa~~Ga~~V---~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~   92 (311)
T d2fyta1          18 IRTESYRDFIYQNPHIFKD--KVVLDVGCGTGILSMFAAKAGAKKV---LGVDQSEILYQAMDIIRLNKLEDTITLIKGK   92 (311)
T ss_dssp             HHHHHHHHHHHHCGGGTTT--CEEEEETCTTSHHHHHHHHTTCSEE---EEEESSTHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred             HHHHHHHHHHHhccccCCc--CEEEEECCCCCHHHHHHHHcCCCEE---EEEeCHHHHHHHHHHHHHhCCCccceEEEee
Confidence            3445576655432  2333  469999999999988776553 333   333433 22   245556666   3334333


Q ss_pred             cccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          277 CEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       277 ~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      .+.++.-+..||+|-+...++...      ..-.++.++-.++|+|+|||.+|-.
T Consensus        93 ~~~l~~~~~~~D~Ivse~~~~~~~------~e~~~~~~~~a~~~~Lkp~G~iip~  141 (311)
T d2fyta1          93 IEEVHLPVEKVDVIISEWMGYFLL------FESMLDSVLYAKNKYLAKGGSVYPD  141 (311)
T ss_dssp             TTTSCCSCSCEEEEEECCCBTTBT------TTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred             HHHhcCccccceEEEEeeeeeecc------cccccHHHHHHHHhcCCCCcEEecc
Confidence            344444458999999987766543      3334567788899999999999854

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.17  E-value=2e-07  Score=87.49  Aligned_cols=99  Identities=10%  Similarity=0.108  Sum_probs=64.6

Q ss_pred             cCCCCeeEEEecCCcceeeeeecc-CCCee--EEEeccCCCCcch----HHHHhhccccccccccccCCCCCCccccccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALT-SDPVW--VMNVVPARKSSTL----SVIYDRGLIGVYHDWCEPFSTYPRTYDLIHV  292 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~-~~~vw--vmnv~p~~~~~~l----~~i~eRGlig~~~~w~~~f~typrtyDliH~  292 (378)
                      ++.|  ..|||+|||.|++|-++. ..++-  .+++.+    .|+    +.+.+.|+.+-..--+.-+...|-+||-|-+
T Consensus        60 l~~G--~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~----~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i~s  133 (285)
T d1kpga_          60 LQPG--MTLLDVGCGWGATMMRAVEKYDVNVVGLTLSK----NQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVS  133 (285)
T ss_dssp             CCTT--CEEEEETCTTSHHHHHHHHHHCCEEEEEESCH----HHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEE
T ss_pred             CCCC--CEEEEecCcchHHHHHHHhcCCcceEEEeccH----HHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccceee
Confidence            5555  559999999999998765 34453  333322    444    3456667744222111222234678999999


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      -..|.+..       .-+...++-|+.|+|+|||.+++.
T Consensus       134 i~~~eh~~-------~~~~~~~~~~~~r~LkpgG~~~l~  165 (285)
T d1kpga_         134 IGAFEHFG-------HERYDAFFSLAHRLLPADGVMLLH  165 (285)
T ss_dssp             ESCGGGTC-------TTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred             ehhhhhcC-------chhHHHHHHHHHhhcCCCCcEEEE
Confidence            88887652       123457899999999999999874

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.16  E-value=8.5e-07  Score=74.89  Aligned_cols=71  Identities=8%  Similarity=-0.052  Sum_probs=55.6

Q ss_pred             CChHHHHHHHHHcC-----------------CCeEEEEcccCCCC-CCCCceeEEEecCccccccCCh-HHHHHHHhhcc
Q 017068           15 DSHKAQIQFALERG-----------------IPAFVAMLGTRRLP-FPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLL   75 (378)
Q Consensus        15 D~se~~vq~A~erg-----------------~~~~~~v~dae~LP-fpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVL   75 (378)
                      |+|+.||+.|+++.                 ....+..++...++ ++..+||+|+|+.+++|..+.. ...++++.|+|
T Consensus        49 D~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~L  128 (201)
T d1pjza_          49 ELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALM  128 (201)
T ss_dssp             EECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHS
T ss_pred             cccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhc
Confidence            44579999999862                 22356667777776 5678999999999998887642 58999999999


Q ss_pred             cCCcEEEEEc
Q 017068           76 RPGGYLVISG   85 (378)
Q Consensus        76 kPGG~lvis~   85 (378)
                      ||||++++..
T Consensus       129 kpgG~l~l~~  138 (201)
T d1pjza_         129 PQACSGLLIT  138 (201)
T ss_dssp             CSEEEEEEEE
T ss_pred             CCCcEEEEEE
Confidence            9999988754

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.4e-07  Score=82.07  Aligned_cols=71  Identities=18%  Similarity=0.089  Sum_probs=52.8

Q ss_pred             CCChHHHHHHHHHcC----CCeEEEEcccC--CCCCCCCceeEEE-----ecCccccccCChHHHHHHHhhcccCCcEEE
Q 017068           14 RDSHKAQIQFALERG----IPAFVAMLGTR--RLPFPAFSFDIVH-----CSRCLIPFTAYNATYLIEVDRLLRPGGYLV   82 (378)
Q Consensus        14 ~D~se~~vq~A~erg----~~~~~~v~dae--~LPfpd~SFD~V~-----cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lv   82 (378)
                      .|+|+.+++.|+++.    ..+.+...++.  ..++++++||.|+     +...+.|+.+.. .+++|+.|+|||||+|+
T Consensus        82 id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~-~~~~~~~r~LkpGG~~~  160 (229)
T d1zx0a1          82 IECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFN-FIKNHAFRLLKPGGVLT  160 (229)
T ss_dssp             EECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHH-HHHHTHHHHEEEEEEEE
T ss_pred             eCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccccccccccccCHH-HHHHHHHHHcCCCcEEE
Confidence            355578999998863    23444444443  4578899999987     466677777766 89999999999999998


Q ss_pred             EEc
Q 017068           83 ISG   85 (378)
Q Consensus        83 is~   85 (378)
                      +..
T Consensus       161 ~~~  163 (229)
T d1zx0a1         161 YCN  163 (229)
T ss_dssp             ECC
T ss_pred             EEe
Confidence            853

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.3e-07  Score=84.98  Aligned_cols=101  Identities=13%  Similarity=0.120  Sum_probs=65.4

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc------ccccccccccCCCCC-CccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL------IGVYHDWCEPFSTYP-RTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl------ig~~~~w~~~f~typ-rtyDliH~~~~~~  297 (378)
                      ..|||+|||+|.++.++.+...  -+|+-.|.+ .++..+-++.-      ....+++..-....| .+||+|-.+...+
T Consensus        55 ~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~  132 (229)
T d1zx0a1          55 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL  132 (229)
T ss_dssp             EEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred             CeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccc
Confidence            5799999999999999987653  256667765 77777765542      223444443333344 6788876443332


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ...    ..+.-....++-|+-|+|||||.+++.+
T Consensus       133 ~~~----~~~~~~~~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         133 SEE----TWHTHQFNFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             BGG----GTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ccc----cccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence            221    0122233568899999999999999854

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.7e-06  Score=77.06  Aligned_cols=76  Identities=12%  Similarity=0.014  Sum_probs=59.1

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC----------------------CCeEEEEcccCCC-CCCCCceeEEEecCcccccc
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG----------------------IPAFVAMLGTRRL-PFPAFSFDIVHCSRCLIPFT   61 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg----------------------~~~~~~v~dae~L-Pfpd~SFD~V~cs~~l~hw~   61 (378)
                      +|+++|     .|+.+|+.|+++.                      ..+.+.++|...+ +...++||+|+...+++|++
T Consensus        69 ~V~gvD-----~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~  143 (229)
T d2bzga1          69 SVVGVE-----ISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAIN  143 (229)
T ss_dssp             EEEEEC-----SCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSC
T ss_pred             cEEEEe-----CCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEecc
Confidence            455555     4568899888753                      2456677787666 47889999999999999987


Q ss_pred             CCh-HHHHHHHhhcccCCcEEEEEc
Q 017068           62 AYN-ATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        62 ~~~-~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      ... ..+++++.|+|||||++++..
T Consensus       144 ~~~r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         144 PGDRKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             chhhHHHHHHHHhhcCCcceEEEEE
Confidence            654 589999999999999988754

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.6e-07  Score=82.54  Aligned_cols=48  Identities=23%  Similarity=0.125  Sum_probs=41.3

Q ss_pred             CCCCCCCCceeEEEecCccccccCCh---HHHHHHHhhcccCCcEEEEEcC
Q 017068           39 RRLPFPAFSFDIVHCSRCLIPFTAYN---ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        39 e~LPfpd~SFD~V~cs~~l~hw~~~~---~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      ...|+++++||+|+|.++++|.....   ..+++++.|+|||||+|+++..
T Consensus       144 ~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~  194 (257)
T d2a14a1         144 PLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT  194 (257)
T ss_dssp             TTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEe
Confidence            34589999999999999999987432   3789999999999999999865

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.07  E-value=3.2e-07  Score=86.36  Aligned_cols=115  Identities=15%  Similarity=0.141  Sum_probs=70.3

Q ss_pred             HHHHHHHHhhh--hcCCCCeeEEEecCCcceeeeeeccCCC-eeEEEeccCCCC-cchHHHHhhccc---cccccccccC
Q 017068          208 RVAYYKNTLNV--KLGTPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDRGLI---GVYHDWCEPF  280 (378)
Q Consensus       208 ~v~~Y~~~~~~--~~~~~~iR~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~-~~l~~i~eRGli---g~~~~w~~~f  280 (378)
                      |...|.+.|..  .+..|  .+|||+|||+|.++-.++... .-|..|-+.... ...+.+-..|+.   -+.+.--+.+
T Consensus        17 R~~~y~~ai~~~~~~~~~--~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~   94 (316)
T d1oria_          17 RTLTYRNSMFHNRHLFKD--KVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV   94 (316)
T ss_dssp             HHHHHHHHHHTCHHHHTT--CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred             HHHHHHHHHHhccccCCc--CEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHc
Confidence            34456665531  13344  469999999999876665542 333333332211 223455556773   3333222334


Q ss_pred             CCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEE
Q 017068          281 STYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV  330 (378)
Q Consensus       281 ~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii  330 (378)
                      +..+..||+|.+..+.....      ....++.++-+++|+|+|||.+|-
T Consensus        95 ~~~~~~~D~ivs~~~~~~l~------~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_          95 ELPVEKVDIIISEWMGYCLF------YESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             CCSSSCEEEEEECCCBBTBT------BTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ccccceeEEEeeeeeeeeec------cHHHHHHHHHHHHhcCCCCeEEEe
Confidence            44447999999987766554      344567888999999999999874

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=4.8e-07  Score=80.73  Aligned_cols=117  Identities=10%  Similarity=-0.068  Sum_probs=78.5

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-cc-----------------------ccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-IG-----------------------VYHDWCEPF  280 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig-----------------------~~~~w~~~f  280 (378)
                      ..|||+|||.|..+-.|.++.-   .|+-.|.+ ..+..+.++-- .+                       ...|..+--
T Consensus        47 ~rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~  123 (229)
T d2bzga1          47 LRVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLP  123 (229)
T ss_dssp             CEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGG
T ss_pred             CEEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhcc
Confidence            3699999999999999999887   67888877 66655544311 10                       111221111


Q ss_pred             CCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC----C------H--HHHHHHHHHHhcCC
Q 017068          281 STYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD----S------P--EVIDKVSRIANTVR  348 (378)
Q Consensus       281 ~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d----~------~--~~~~~~~~~~~~l~  348 (378)
                      +....+||+|....+|....       .-..+.++-+|-|+|||||++++..    .      .  -.-++++++... .
T Consensus       124 ~~~~~~fd~i~~~~~l~~~~-------~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~  195 (229)
T d2bzga1         124 RTNIGKFDMIWDRGALVAIN-------PGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-I  195 (229)
T ss_dssp             GSCCCCEEEEEESSSTTTSC-------GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-T
T ss_pred             ccccCceeEEEEEEEEEecc-------chhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-C
Confidence            34457999999998888663       2233678999999999999877752    1      0  134567777765 4


Q ss_pred             ceEEE
Q 017068          349 WTAAV  353 (378)
Q Consensus       349 W~~~~  353 (378)
                      |++..
T Consensus       196 ~~i~~  200 (229)
T d2bzga1         196 CNIRC  200 (229)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            77654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.03  E-value=2.2e-06  Score=79.55  Aligned_cols=66  Identities=20%  Similarity=0.105  Sum_probs=55.7

Q ss_pred             CChHHHHHHHHHc------C--CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER------G--IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er------g--~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.++.+++.|+++      +  ..+.+.++|....+|++++||+|++     |.+++. .++.++.|+|||||++++..|
T Consensus       128 d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~l-----dlp~P~-~~l~~~~~~LkpGG~lv~~~P  201 (264)
T d1i9ga_         128 EQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL-----DMLAPW-EVLDAVSRLLVAGGVLMVYVA  201 (264)
T ss_dssp             CSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE-----ESSCGG-GGHHHHHHHEEEEEEEEEEES
T ss_pred             cCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEEE-----ecCCHH-HHHHHHHhccCCCCEEEEEeC
Confidence            4557899999874      1  2467888899899999999999975     678888 999999999999999999877

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.98  E-value=7.1e-06  Score=76.81  Aligned_cols=73  Identities=15%  Similarity=0.158  Sum_probs=55.4

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCC--------hHHHHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY--------NATYLIE   70 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~--------~~~~L~E   70 (378)
                      .|++++++     +.|++.|+++    |+.  +.+...|   .++++++||.|+|..++.|+.+.        -..++++
T Consensus        86 ~v~git~s-----~~q~~~a~~~~~~~~l~~~v~~~~~d---~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~  157 (291)
T d1kpia_          86 NVIGLTLS-----ENQYAHDKAMFDEVDSPRRKEVRIQG---WEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKK  157 (291)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHSCCSSCEEEEECC---GGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHH
T ss_pred             ceeeccch-----HHHHHHHHHHHHhhccchhhhhhhhc---ccccccccceEeechhHHhcchhhhhhHHHHHHHHHHH
Confidence            35555555     6888877765    554  3334444   46789999999999999999864        1489999


Q ss_pred             HhhcccCCcEEEEEc
Q 017068           71 VDRLLRPGGYLVISG   85 (378)
Q Consensus        71 v~RVLkPGG~lvis~   85 (378)
                      +.|+|||||.+++..
T Consensus       158 i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         158 FYNLTPDDGRMLLHT  172 (291)
T ss_dssp             HHHTSCTTCEEEEEE
T ss_pred             HHHhCCCCCceEEEE
Confidence            999999999999864

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=9.1e-07  Score=80.93  Aligned_cols=120  Identities=12%  Similarity=0.052  Sum_probs=76.9

Q ss_pred             eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc--cccc-----------------------------
Q 017068          225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG--LIGV-----------------------------  272 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG--lig~-----------------------------  272 (378)
                      =+.+||+|||.|.+...++.+.+  -+|+-.|-+ ++++.+-.+=  -.+.                             
T Consensus        55 g~~vLDiGcG~g~~~~~~~~~~~--~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T d2g72a1          55 GRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  132 (263)
T ss_dssp             CSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CcEEEEeccCCCHHHHHHhcccC--CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence            35889999999988765554433  377888876 7887664320  0010                             


Q ss_pred             ------cccccc--c---CCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH-------
Q 017068          273 ------YHDWCE--P---FSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-------  334 (378)
Q Consensus       273 ------~~~w~~--~---f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-------  334 (378)
                            ..|-..  +   .+..+.+||+|-|..+++...     .++.++..+|-++-|+|||||++|+.+..       
T Consensus       133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~-----~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~  207 (263)
T d2g72a1         133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS-----PDLASFQRALDHITTLLRPGGHLLLIGALEESWYLA  207 (263)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC-----SSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEE
T ss_pred             hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHc-----cCHHHHHHHHHHHHHHcCCCCEEEEecccCCccccc
Confidence                  011111  1   223346899999998887653     23445678899999999999999997420       


Q ss_pred             ---------HHHHHHHHHHhcCCceE
Q 017068          335 ---------EVIDKVSRIANTVRWTA  351 (378)
Q Consensus       335 ---------~~~~~~~~~~~~l~W~~  351 (378)
                               =..+.|+++++.--.++
T Consensus       208 ~~~~~~~~~~t~e~v~~~l~~aGf~v  233 (263)
T d2g72a1         208 GEARLTVVPVSEEEVREALVRSGYKV  233 (263)
T ss_dssp             TTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred             CCcccccCCCCHHHHHHHHHHCCCeE
Confidence                     13456666666555554

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=6.2e-07  Score=84.64  Aligned_cols=95  Identities=13%  Similarity=0.090  Sum_probs=62.1

Q ss_pred             eEEEecCCcceeeeeeccCCC-eeEEEeccCCCCcc----hHHHHhhcccc---ccccccccCCCCCCccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKSST----LSVIYDRGLIG---VYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~~~----l~~i~eRGlig---~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      .+|||+|||+|.++..+.... .-|   ...+.+.+    .+.+.+.|+..   +++.-.+.++.-+..||+|.+..++.
T Consensus        40 ~~VLDlGcGtG~ls~~aa~~Ga~~V---~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~  116 (328)
T d1g6q1_          40 KIVLDVGCGTGILSMFAAKHGAKHV---IGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY  116 (328)
T ss_dssp             CEEEEETCTTSHHHHHHHHTCCSEE---EEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred             CEEEEeCCCCCHHHHHHHHhCCCEE---EEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence            379999999999887666543 223   33333322    34556667632   23332333333347999999987776


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEE
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVV  329 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~i  329 (378)
                      ...      ..-.+..++.+++|+|+|||.+|
T Consensus       117 ~~~------~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         117 FLL------YESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TBS------TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eec------cchhHHHHHHHHHhccCCCeEEE
Confidence            554      33445678999999999999886

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.92  E-value=3.2e-06  Score=75.29  Aligned_cols=76  Identities=14%  Similarity=0.190  Sum_probs=56.7

Q ss_pred             CCeEEEecCCCCChHHHHHHHHH----cCCC-eEEEEcccCCCC--CCCCceeEEEecCccccccCCh--------HHHH
Q 017068            4 ENILTLSFAPRDSHKAQIQFALE----RGIP-AFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFTAYN--------ATYL   68 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~e----rg~~-~~~~v~dae~LP--fpd~SFD~V~cs~~l~hw~~~~--------~~~L   68 (378)
                      .+++++++.     +.+++.|.+    .++. +.+..+|+..|.  |++++||.|++.+. .+|+...        ...+
T Consensus        54 ~~~iGiD~~-----~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp-~P~~k~~h~k~Rl~~~~~l  127 (204)
T d2fcaa1          54 INYIGIELF-----KSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS-DPWPKKRHEKRRLTYSHFL  127 (204)
T ss_dssp             SEEEEECSC-----HHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC-CCCCSGGGGGGSTTSHHHH
T ss_pred             CcEEEeecc-----hHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc-cccchhhhcchhhhHHHHH
Confidence            456666666     455555544    4664 778888988887  99999999988765 4555432        2799


Q ss_pred             HHHhhcccCCcEEEEEc
Q 017068           69 IEVDRLLRPGGYLVISG   85 (378)
Q Consensus        69 ~Ev~RVLkPGG~lvis~   85 (378)
                      +++.|+|||||.|.+.+
T Consensus       128 ~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         128 KKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             HHHHHHHTTSCEEEEEE
T ss_pred             HHHHHhCCCCcEEEEEE
Confidence            99999999999999865

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.90  E-value=1.2e-05  Score=74.71  Aligned_cols=73  Identities=15%  Similarity=0.193  Sum_probs=55.2

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRP   77 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkP   77 (378)
                      .|++++++     +.|++.|+++    |+.  +.+...|...+   +++||.|++..+++|+.+.. ..+++++.|+|||
T Consensus        77 ~v~gi~ls-----~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkp  148 (280)
T d2fk8a1          77 NVIGLTLS-----KNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPA  148 (280)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCT
T ss_pred             eEEEecch-----HHHHHHHHHHHHhhccccchhhhhhhhhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCC
Confidence            45666655     6888888876    443  34444454433   57899999999999998753 4899999999999


Q ss_pred             CcEEEEEc
Q 017068           78 GGYLVISG   85 (378)
Q Consensus        78 GG~lvis~   85 (378)
                      ||.+++..
T Consensus       149 gG~~~i~~  156 (280)
T d2fk8a1         149 DGRMTVQS  156 (280)
T ss_dssp             TCEEEEEE
T ss_pred             CceEEEEE
Confidence            99999864

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.90  E-value=2.9e-06  Score=78.05  Aligned_cols=76  Identities=20%  Similarity=0.332  Sum_probs=51.4

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC-----eEEEEcccC----CCCCCCCceeEEEecC-ccccccCC------h
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP-----AFVAMLGTR----RLPFPAFSFDIVHCSR-CLIPFTAY------N   64 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~-----~~~~v~dae----~LPfpd~SFD~V~cs~-~l~hw~~~------~   64 (378)
                      +|++++++     +.||+.|+++    +..     ..+..++..    .+|+ .++||+|+|.. ++.|+++.      .
T Consensus        80 ~v~gvD~S-----~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fd~v~~~~~~~~~~~~~~~~~~~~  153 (292)
T d1xvaa_          80 SVTSVDAS-----DKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA-GDGFDAVICLGNSFAHLPDSKGDQSEH  153 (292)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC-TTCEEEEEECSSCGGGSCCTTSSSHHH
T ss_pred             eeeeccCc-----hHHHHHHHHHHHhcccccccceeeeeeccccccccccCC-CCCceEEEEecCchhhcCCcccChHHH
Confidence            46666555     6899888775    222     223333322    2333 56899999865 67787653      2


Q ss_pred             HHHHHHHhhcccCCcEEEEEcC
Q 017068           65 ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        65 ~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      ..+|+|+.|+|||||+|++...
T Consensus       154 ~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         154 RLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             HHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCcCcEEEEeec
Confidence            4799999999999999999754

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.89  E-value=6.8e-06  Score=71.37  Aligned_cols=75  Identities=12%  Similarity=0.055  Sum_probs=56.3

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC---CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI---PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP   77 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~---~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkP   77 (378)
                      +|+++     |+|+.+++.|+++    ++   .+.+..+|... ++++++||+|+|+..+++..+....+++++.|+|||
T Consensus        76 ~v~~i-----D~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lkp  149 (194)
T d1dusa_          76 STTMA-----DINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKD  149 (194)
T ss_dssp             EEEEE-----ESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEE
T ss_pred             cccee-----eeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCc
Confidence            45555     5557888888764    33   35677778765 788999999999887665544334789999999999


Q ss_pred             CcEEEEEc
Q 017068           78 GGYLVISG   85 (378)
Q Consensus        78 GG~lvis~   85 (378)
                      ||.+++..
T Consensus       150 gG~l~i~~  157 (194)
T d1dusa_         150 NGEIWVVI  157 (194)
T ss_dssp             EEEEEEEE
T ss_pred             CcEEEEEE
Confidence            99988754

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.88  E-value=2.4e-06  Score=77.41  Aligned_cols=130  Identities=15%  Similarity=0.174  Sum_probs=75.6

Q ss_pred             EEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchH----HHHhhcc-cccccccccc--CCCCCCccccccccCc
Q 017068          227 NIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLS----VIYDRGL-IGVYHDWCEP--FSTYPRTYDLIHVSGI  295 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~----~i~eRGl-ig~~~~w~~~--f~typrtyDliH~~~~  295 (378)
                      +|||+|||+|+++.+|.+.   .=-   |...|-+ .++.    .+-.|+. ..+..+-+.+  ++.....+|.++++-.
T Consensus        76 ~VLDlGaGsG~~t~~la~~VG~~G~---V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~  152 (227)
T d1g8aa_          76 SVLYLGIASGTTASHVSDIVGWEGK---IFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA  152 (227)
T ss_dssp             EEEEETTTSTTHHHHHHHHHCTTSE---EEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred             EEEEeccCCCHHHHHHHHHhCCCCE---EEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEcc
Confidence            7999999999999999742   221   2333433 3443    3334453 3344443332  2333356787776421


Q ss_pred             cccccCCCCCCCCCCccceeeeecccccCCCeEEEeC----------CHHHHHHHHHHHhcCCceEE-EecCCCCCCCCe
Q 017068          296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD----------SPEVIDKVSRIANTVRWTAA-VHDKEPGSNGRE  364 (378)
Q Consensus       296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d----------~~~~~~~~~~~~~~l~W~~~-~~~~~~~~~~~e  364 (378)
                      ...           ....++-++.|+|+|||+++|..          ...+..+++++.+. .++.. ..+.++ -..+.
T Consensus       153 ~~~-----------~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L~p-~~~~H  219 (227)
T d1g8aa_         153 QPT-----------QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNLEP-YEKDH  219 (227)
T ss_dssp             STT-----------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEECTT-TSSSE
T ss_pred             ccc-----------hHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcCCC-CCCce
Confidence            111           12468999999999999999862          13455666666544 45543 334332 12345


Q ss_pred             EEEEEEec
Q 017068          365 KILVATKS  372 (378)
Q Consensus       365 ~~l~~~K~  372 (378)
                      -+++++|+
T Consensus       220 ~~vv~rK~  227 (227)
T d1g8aa_         220 ALFVVRKT  227 (227)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEeC
Confidence            77888885

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=97.83  E-value=1.1e-05  Score=72.93  Aligned_cols=54  Identities=22%  Similarity=0.268  Sum_probs=44.1

Q ss_pred             eEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           31 AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        31 ~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +.+..+|... +.| .+||+|+++.+++||+++. .++|+++.|+|||||++++...
T Consensus       132 v~~~~~D~~~-~~~-~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         132 VDVVEGDFFE-PLP-RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             EEEEECCTTS-CCS-SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hhhccccchh-hcc-cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence            6677777643 333 5799999999999998765 4789999999999999999764

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.80  E-value=1.9e-05  Score=73.56  Aligned_cols=73  Identities=16%  Similarity=0.224  Sum_probs=56.6

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRP   77 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkP   77 (378)
                      .|++++++     +.|++.|+++    |.  .+.+..+|...+|   ++||.|++..++.|+.... ..+++++.|+|||
T Consensus        87 ~v~git~s-----~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkp  158 (285)
T d1kpga_          87 NVVGLTLS-----KNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPA  158 (285)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCT
T ss_pred             ceEEEecc-----HHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCC
Confidence            46666666     6888888775    32  3556777776664   6899999999999997652 4899999999999


Q ss_pred             CcEEEEEc
Q 017068           78 GGYLVISG   85 (378)
Q Consensus        78 GG~lvis~   85 (378)
                      ||.+++..
T Consensus       159 gG~~~l~~  166 (285)
T d1kpga_         159 DGVMLLHT  166 (285)
T ss_dssp             TCEEEEEE
T ss_pred             CCcEEEEE
Confidence            99999753

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.79  E-value=6.2e-06  Score=73.36  Aligned_cols=114  Identities=11%  Similarity=0.181  Sum_probs=69.2

Q ss_pred             eEEEecCCcceeeeeeccC--CCeeEEEeccCCCC-cch----HHHHhhcc--cccc-cc---ccccCCCCCCccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKS-STL----SVIYDRGL--IGVY-HD---WCEPFSTYPRTYDLIHV  292 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~--~~vwvmnv~p~~~~-~~l----~~i~eRGl--ig~~-~~---w~~~f~typrtyDliH~  292 (378)
                      ..|||+|||.|.|...|..  .+.   |++-.|.+ +.+    +.+.++|+  +-++ .|   .-+.|+  +.++|.++.
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~~---~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~--~~~~d~v~i  105 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPDI---NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE--PGEVKRVYL  105 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC--TTSCCEEEE
T ss_pred             ceEEEEEecCcHHHHHHHHhCCCC---cEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccC--chhhhcccc
Confidence            4699999999999999864  345   56666655 555    44556677  2211 11   111233  378998876


Q ss_pred             cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe-CCHHHHHHHHHHHh
Q 017068          293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIAN  345 (378)
Q Consensus       293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-d~~~~~~~~~~~~~  345 (378)
                      ....-..+ ......|=--..+|-|+.|+|+|||.++|. |...+.+.+.+...
T Consensus       106 ~fp~P~~k-~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~  158 (204)
T d2fcaa1         106 NFSDPWPK-KRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFS  158 (204)
T ss_dssp             ESCCCCCS-GGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHH
T ss_pred             ccccccch-hhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHH
Confidence            43322111 000011111136888999999999999775 77777777766644

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=4.4e-06  Score=76.22  Aligned_cols=47  Identities=26%  Similarity=0.349  Sum_probs=39.7

Q ss_pred             CCCCCCCceeEEEecCccccccCCh---HHHHHHHhhcccCCcEEEEEcC
Q 017068           40 RLPFPAFSFDIVHCSRCLIPFTAYN---ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        40 ~LPfpd~SFD~V~cs~~l~hw~~~~---~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      ..++++++||+|+|.+|++|.+.+.   ..+++++.|+|||||+|++.+.
T Consensus       150 ~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~  199 (263)
T d2g72a1         150 AGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA  199 (263)
T ss_dssp             SSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence            3456788999999999999986432   4899999999999999999765

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.74  E-value=2.1e-06  Score=77.79  Aligned_cols=114  Identities=12%  Similarity=0.058  Sum_probs=70.6

Q ss_pred             EEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHh----hcc-ccccccccccCCCCCCccccccccCcccc
Q 017068          227 NIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYD----RGL-IGVYHDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~e----RGl-ig~~~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      +|||+|||+|.++..|.+.  +-   .|...|-+ .++..+.+    |+. .-+..+.+.+.+..+.++|.+.+...+. 
T Consensus        77 ~VLDlGcGsG~~~~~la~~~~~g---~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~-  152 (230)
T d1g8sa_          77 KILYLGASAGTTPSHVADIADKG---IVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVA-  152 (230)
T ss_dssp             EEEEESCCSSHHHHHHHHHTTTS---EEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC-
T ss_pred             EEEEeCEEcCHHHHHHHHhCCCC---EEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeecccc-
Confidence            6999999999999888753  11   23444543 45544443    343 4466676666543345666544432233 


Q ss_pred             ccCCCCCCCCCCccceeeeecccccCCCeEEEeCC----------HHHHHHHHHHHhcCCceEE
Q 017068          299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS----------PEVIDKVSRIANTVRWTAA  352 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~----------~~~~~~~~~~~~~l~W~~~  352 (378)
                              +......++.|+.|+|+|||++++.+.          ....+++.+.++.--.+..
T Consensus       153 --------~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~iv  208 (230)
T d1g8sa_         153 --------QPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIV  208 (230)
T ss_dssp             --------STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEE
T ss_pred             --------chHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence                    223346789999999999999999732          2345566666655556654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.73  E-value=3.4e-06  Score=72.96  Aligned_cols=115  Identities=17%  Similarity=0.213  Sum_probs=74.5

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc---ccccc-cccccCCCCCCccccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL---IGVYH-DWCEPFSTYPRTYDLI  290 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~~~-~w~~~f~typrtyDli  290 (378)
                      +..|  ..|||+|||+|+++.+|....-   .|+..|.+ +.+..+-++    |+   +=+++ |.-+. +.-...||+|
T Consensus        31 ~~~g--~~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~-~~~~~~~D~v  104 (186)
T d1l3ia_          31 PGKN--DVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA-LCKIPDIDIA  104 (186)
T ss_dssp             CCTT--CEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH-HTTSCCEEEE
T ss_pred             CCCC--CEEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc-ccccCCcCEE
Confidence            4444  4699999999999999987654   44566765 777655543    44   11222 22222 2223689998


Q ss_pred             cccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-HHHHHHHHHHHhcCCceEE
Q 017068          291 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWTAA  352 (378)
Q Consensus       291 H~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-~~~~~~~~~~~~~l~W~~~  352 (378)
                      -+.....            .+..++-++-|.|||||++++... .+....+.+..+...|+..
T Consensus       105 ~~~~~~~------------~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~  155 (186)
T d1l3ia_         105 VVGGSGG------------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN  155 (186)
T ss_dssp             EESCCTT------------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred             EEeCccc------------cchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeE
Confidence            8754322            346789999999999999998763 4555666666666666543

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.72  E-value=3.8e-06  Score=74.77  Aligned_cols=123  Identities=12%  Similarity=0.148  Sum_probs=74.1

Q ss_pred             eEEEecCCcceeeeeeccC--CCeeEEEeccCCCC-cchH----HHHhhcc--ccc-cccccccCCCCC-CccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKS-STLS----VIYDRGL--IGV-YHDWCEPFSTYP-RTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~--~~vwvmnv~p~~~~-~~l~----~i~eRGl--ig~-~~~w~~~f~typ-rtyDliH~~~  294 (378)
                      ..|||+|||.|.|...|+.  .+.   |++-.|-+ ..+.    -+-++|+  +-+ ..|-.+-..-+| .++|.||+..
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~~---~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f  109 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPDI---NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF  109 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred             CeEEEEeccCCHHHHHHHHHCCCC---ceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc
Confidence            5799999999999988864  355   55556654 4443    3455666  322 233222122234 7999998642


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEE-eCCHHHHHHHHHHHhcCCceEE
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV-RDSPEVIDKVSRIANTVRWTAA  352 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii-~d~~~~~~~~~~~~~~l~W~~~  352 (378)
                      . ..|........|=--..+|-++.|+|+|||.+++ +|..++.+.+.+......+...
T Consensus       110 P-dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~  167 (204)
T d1yzha1         110 S-DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN  167 (204)
T ss_dssp             C-CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred             c-ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCcccc
Confidence            2 2221000011111114678899999999999977 5777777777666666566544

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=97.71  E-value=1.5e-05  Score=72.46  Aligned_cols=74  Identities=24%  Similarity=0.293  Sum_probs=52.1

Q ss_pred             CeEEEecCCCCChHHHHHHHHH----cCCC--eEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccC
Q 017068            5 NILTLSFAPRDSHKAQIQFALE----RGIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRP   77 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~e----rg~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkP   77 (378)
                      .++++++ |     .+++.|++    .+..  +.+..+|... |.|. .||+|++.++++||++.. .++|++++|+|||
T Consensus       107 ~~~~~Dl-p-----~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p~-~~D~v~~~~vLh~~~d~~~~~lL~~i~~~Lkp  178 (256)
T d1qzza2         107 RGTLVEL-A-----GPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSFVLLNWSDEDALTILRGCVRALEP  178 (256)
T ss_dssp             EEEEEEC-H-----HHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred             EEEEecC-h-----HHHHHHHHHHhhcCCcceeeeeeeeccc-cccc-cchhhhccccccccCcHHHHHHHHHHHhhcCC
Confidence            3455554 2     34555544    3433  4555555433 5554 599999999999998765 4789999999999


Q ss_pred             CcEEEEEcC
Q 017068           78 GGYLVISGP   86 (378)
Q Consensus        78 GG~lvis~p   86 (378)
                      ||+|++...
T Consensus       179 gG~llI~d~  187 (256)
T d1qzza2         179 GGRLLVLDR  187 (256)
T ss_dssp             EEEEEEEEC
T ss_pred             cceeEEEEe
Confidence            999999765

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.66  E-value=3.7e-05  Score=68.17  Aligned_cols=77  Identities=19%  Similarity=0.298  Sum_probs=57.2

Q ss_pred             CCCeEEEecCCCCChHHHHHHHHH----cCCC-eEEEEcccCCCC--CCCCceeEEEecCccccccCCh--------HHH
Q 017068            3 SENILTLSFAPRDSHKAQIQFALE----RGIP-AFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFTAYN--------ATY   67 (378)
Q Consensus         3 ~~~v~~ms~ap~D~se~~vq~A~e----rg~~-~~~~v~dae~LP--fpd~SFD~V~cs~~l~hw~~~~--------~~~   67 (378)
                      +.+++++++.     +.++..|.+    .+++ +.+..+|+..++  |+++++|.|++.+ .-+|+...        ...
T Consensus        55 ~~~~iGid~~-----~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f-PdPw~K~~h~krRl~~~~~  128 (204)
T d1yzha1          55 DINYIGIDIQ-----KSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF-SDPWPKKRHEKRRLTYKTF  128 (204)
T ss_dssp             TSEEEEEESC-----HHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES-CCCCCSGGGGGGSTTSHHH
T ss_pred             CCceEEEecc-----HHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc-cccccchhhhhhhhhHHHH
Confidence            3467777766     455555544    4665 678888988886  8999999998765 34565432        378


Q ss_pred             HHHHhhcccCCcEEEEEc
Q 017068           68 LIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        68 L~Ev~RVLkPGG~lvis~   85 (378)
                      |.++.|+|||||.|.+++
T Consensus       129 l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         129 LDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             HHHHHHHSCTTCEEEEEE
T ss_pred             HHHHHHhCCCCcEEEEEE
Confidence            999999999999999865

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.65  E-value=1.7e-05  Score=70.57  Aligned_cols=75  Identities=11%  Similarity=0.011  Sum_probs=49.9

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc---CCCeEEEEcccCCCCCCCCceeEEEecC-ccccccCChHHHHHHHhhcccCCcE
Q 017068            5 NILTLSFAPRDSHKAQIQFALER---GIPAFVAMLGTRRLPFPAFSFDIVHCSR-CLIPFTAYNATYLIEVDRLLRPGGY   80 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er---g~~~~~~v~dae~LPfpd~SFD~V~cs~-~l~hw~~~~~~~L~Ev~RVLkPGG~   80 (378)
                      .|+|++++|     .|++.|+++   ...+.+..+++...+.++..||.|.+.+ .+.|+.+.. .+++|+.|+|||||+
T Consensus        82 ~V~gvDis~-----~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~~~~~~~-~~l~~~~~~LkpgG~  155 (209)
T d1nt2a_          82 IIYAVEYSA-----KPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIE-ILKANAEFFLKEKGE  155 (209)
T ss_dssp             EEEEECCCH-----HHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCCSTTHHH-HHHHHHHHHEEEEEE
T ss_pred             eEEEEeCCH-----HHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecccChhhHH-HHHHHHHHHhccCCe
Confidence            377777775     666666553   1246677778777666555555443322 244544444 899999999999999


Q ss_pred             EEEEc
Q 017068           81 LVISG   85 (378)
Q Consensus        81 lvis~   85 (378)
                      ++++.
T Consensus       156 l~i~~  160 (209)
T d1nt2a_         156 VVIMV  160 (209)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99864

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=4.9e-06  Score=78.78  Aligned_cols=76  Identities=13%  Similarity=-0.029  Sum_probs=55.8

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc--------------CCCeEEEEcccCCCCCCCCceeE-EEecCccccccCChHHHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALER--------------GIPAFVAMLGTRRLPFPAFSFDI-VHCSRCLIPFTAYNATYLI   69 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er--------------g~~~~~~v~dae~LPfpd~SFD~-V~cs~~l~hw~~~~~~~L~   69 (378)
                      .+++++++|     .+++.|++.              ..++.+..+|+..+||.+..||+ |++...+.|+++.. .+|.
T Consensus       177 ~~~Gid~s~-----~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~~advi~~~~~~f~~~~~-~~l~  250 (328)
T d1nw3a_         177 HHYGVEKAD-----IPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVD-HQLK  250 (328)
T ss_dssp             EEEEEECSH-----HHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHHHHCSEEEECCTTTCHHHH-HHHH
T ss_pred             eEEEEeCCH-----HHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccccCcceEEEEcceecchHHH-HHHH
Confidence            466666664     555555442              23578899999999999888754 33445567777666 8999


Q ss_pred             HHhhcccCCcEEEEEcC
Q 017068           70 EVDRLLRPGGYLVISGP   86 (378)
Q Consensus        70 Ev~RVLkPGG~lvis~p   86 (378)
                      |+.|+|||||+++...+
T Consensus       251 e~~r~LKpGg~iv~~~~  267 (328)
T d1nw3a_         251 ERFANMKEGGRIVSSKP  267 (328)
T ss_dssp             HHHTTCCTTCEEEESSC
T ss_pred             HHHHhCCCCcEEEEecc
Confidence            99999999999987654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.65  E-value=4.6e-05  Score=68.66  Aligned_cols=76  Identities=11%  Similarity=0.133  Sum_probs=52.8

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC---CCeEEEEcccCC-CCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY   80 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg---~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~   80 (378)
                      .|+|++++|     .|++.|+++.   .......+++.. .++.+..||++++...++|+.+.. .+++++.|+|||||+
T Consensus       100 ~V~aVDiS~-----~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~~~~~-~~l~~~~r~LKpgG~  173 (230)
T d1g8sa_         100 IVYAIEYAP-----RIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAE-ILIKNAKWFLKKGGY  173 (230)
T ss_dssp             EEEEEESCH-----HHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCSTTHHH-HHHHHHHHHEEEEEE
T ss_pred             EEEEEeCcH-----HHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccccchHHHH-HHHHHHHHhcccCce
Confidence            477777775     7777777752   234445555433 357788888877655555554444 899999999999999


Q ss_pred             EEEEcC
Q 017068           81 LVISGP   86 (378)
Q Consensus        81 lvis~p   86 (378)
                      ++++..
T Consensus       174 ~~i~~k  179 (230)
T d1g8sa_         174 GMIAIK  179 (230)
T ss_dssp             EEEEEE
T ss_pred             EEEEee
Confidence            998743

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.64  E-value=7.4e-06  Score=72.90  Aligned_cols=137  Identities=15%  Similarity=0.148  Sum_probs=75.5

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHH----Hhhcccc-ccccccccCCCCCCcccccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVI----YDRGLIG-VYHDWCEPFSTYPRTYDLIH  291 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i----~eRGlig-~~~~w~~~f~typrtyDliH  291 (378)
                      ++.|.  .|||+|||+|+++.+|.+.  +-   -|...|-+ .++..+    -.|+.+- +..+-+. .+.|+..+|.+-
T Consensus        54 lkpg~--~VLDlGcG~G~~~~~la~~v~~g---~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~-~~~~~~~~~~vd  127 (209)
T d1nt2a_          54 LRGDE--RVLYLGAASGTTVSHLADIVDEG---IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASK-PWKYSGIVEKVD  127 (209)
T ss_dssp             CCSSC--EEEEETCTTSHHHHHHHHHTTTS---EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTC-GGGTTTTCCCEE
T ss_pred             CCCCC--EEEEeCCcCCHHHHHHHHhccCC---eEEEEeCCHHHHHHHHHHhhccCCceEEEeeccC-ccccccccceEE
Confidence            44443  7999999999998887642  22   23555654 555443    3344433 3333322 334555555433


Q ss_pred             ccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC----------HHHHHHHHHHHhcCCceEE-EecCCCCC
Q 017068          292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS----------PEVIDKVSRIANTVRWTAA-VHDKEPGS  360 (378)
Q Consensus       292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~----------~~~~~~~~~~~~~l~W~~~-~~~~~~~~  360 (378)
                      +  +|....      .......++.|+.|+|+|||++++.+.          ..+...+.+..+. -++.. ..+.+  |
T Consensus       128 ~--v~~~~~------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~-gf~i~E~i~L~--P  196 (209)
T d1nt2a_         128 L--IYQDIA------QKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEG-DFKIVKHGSLM--P  196 (209)
T ss_dssp             E--EEECCC------STTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHT-TSEEEEEEECT--T
T ss_pred             E--EEeccc------ChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHc-CCEEEEEEccC--C
Confidence            2  233221      122335789999999999999998642          2334444333222 24432 23333  4


Q ss_pred             CCCeEEEEEEecC
Q 017068          361 NGREKILVATKSL  373 (378)
Q Consensus       361 ~~~e~~l~~~K~~  373 (378)
                      ..++-++|.-+.|
T Consensus       197 ~~~~H~~v~~~r~  209 (209)
T d1nt2a_         197 YHRDHIFIHAYRF  209 (209)
T ss_dssp             TCTTEEEEEEEEC
T ss_pred             CccCcEEEEEEeC
Confidence            5566777776654

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.61  E-value=3e-05  Score=71.13  Aligned_cols=65  Identities=9%  Similarity=0.131  Sum_probs=51.9

Q ss_pred             CChHHHHHHHHHc----C--CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----G--IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g--~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.++.+++.|+++    +  -.+.+..+|.... +++++||+|++     +.+++. .++.++.|+|||||+|++..|
T Consensus       117 D~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~l-----d~p~p~-~~l~~~~~~LKpGG~lv~~~P  187 (250)
T d1yb2a1         117 ERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVIA-----DIPDPW-NHVQKIASMMKPGSVATFYLP  187 (250)
T ss_dssp             CSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEEE-----CCSCGG-GSHHHHHHTEEEEEEEEEEES
T ss_pred             ECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeeee-----cCCchH-HHHHHHHHhcCCCceEEEEeC
Confidence            4557899999885    1  2457777887665 67899999986     456666 899999999999999999877

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.61  E-value=2.5e-05  Score=67.35  Aligned_cols=73  Identities=12%  Similarity=0.123  Sum_probs=57.7

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG   78 (378)
                      .|+++++.     +.+++.|+++    |+  .+.+..+|+..++++..+||+|+|.....|+    ...++++.+.||||
T Consensus        57 ~V~avD~~-----~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~~~~----~~~~~~~~~~Lkpg  127 (186)
T d1l3ia_          57 RVYAIDRN-----PEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGEL----QEILRIIKDKLKPG  127 (186)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCTTCH----HHHHHHHHHTEEEE
T ss_pred             EEEEecCC-----HHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCccccc----hHHHHHHHHHhCcC
Confidence            46666554     6888888775    54  4678889998889999999999998755442    37899999999999


Q ss_pred             cEEEEEcC
Q 017068           79 GYLVISGP   86 (378)
Q Consensus        79 G~lvis~p   86 (378)
                      |++++...
T Consensus       128 G~lvi~~~  135 (186)
T d1l3ia_         128 GRIIVTAI  135 (186)
T ss_dssp             EEEEEEEC
T ss_pred             CEEEEEee
Confidence            99998764

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.59  E-value=1.3e-05  Score=73.68  Aligned_cols=97  Identities=14%  Similarity=0.146  Sum_probs=62.3

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEE
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVI   83 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvi   83 (378)
                      ..|++++++|.-+..+. +.|+.++++..+..++... ++++++||+|+|+....    .....+.++.|+|||||+|++
T Consensus       143 ~~V~gvDis~~av~~A~-~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~~----~l~~l~~~~~~~LkpGG~lil  216 (254)
T d2nxca1         143 GKALGVDIDPMVLPQAE-ANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAE----LHAALAPRYREALVPGGRALL  216 (254)
T ss_dssp             CEEEEEESCGGGHHHHH-HHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHH----HHHHHHHHHHHHEEEEEEEEE
T ss_pred             CEEEEEECChHHHHHHH-HHHHHcCCceeEEeccccc-cccccccchhhhccccc----cHHHHHHHHHHhcCCCcEEEE
Confidence            35778877764333332 2333457888888887654 57789999999864332    223778999999999999999


Q ss_pred             EcCCCCCCccchHHHHHHHHHHHhceeee
Q 017068           84 SGPPVQWPKQDKEWADLQAVARALCYELI  112 (378)
Q Consensus        84 s~pp~~~~~~~~~w~~l~~l~~~lcw~~~  112 (378)
                      |+..   .   ..-..+.+..+...++.+
T Consensus       217 Sgil---~---~~~~~v~~~~~~~Gf~~~  239 (254)
T d2nxca1         217 TGIL---K---DRAPLVREAMAGAGFRPL  239 (254)
T ss_dssp             EEEE---G---GGHHHHHHHHHHTTCEEE
T ss_pred             Eecc---h---hhHHHHHHHHHHCCCEEE
Confidence            8641   1   111344555555555543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.46  E-value=3.4e-05  Score=68.44  Aligned_cols=68  Identities=10%  Similarity=0.122  Sum_probs=52.6

Q ss_pred             eEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068            6 ILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY   80 (378)
Q Consensus         6 v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~   80 (378)
                      |+++++.     +.+++.|+++    ++ ++.+..+|+...++.+++||+|+|..++.|.+       .++.++|||||+
T Consensus       103 V~~id~~-----~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~p-------~~l~~~LkpGG~  170 (213)
T d1dl5a1         103 VVSVEYS-----RKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGR  170 (213)
T ss_dssp             EEEEESC-----HHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEE
T ss_pred             EEEeecc-----hhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhccHHHhH-------HHHHHhcCCCcE
Confidence            6666655     6788888775    33 45667788888888899999999999887653       357789999999


Q ss_pred             EEEEc
Q 017068           81 LVISG   85 (378)
Q Consensus        81 lvis~   85 (378)
                      +++..
T Consensus       171 lv~pv  175 (213)
T d1dl5a1         171 VIVPI  175 (213)
T ss_dssp             EEEEB
T ss_pred             EEEEE
Confidence            99854

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.46  E-value=6.1e-05  Score=65.77  Aligned_cols=45  Identities=24%  Similarity=0.351  Sum_probs=38.5

Q ss_pred             CCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           42 PFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        42 Pfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +.+.+.||+|+|.++++++.++. .++++.+++.|+|||+|++...
T Consensus       127 ~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~s  172 (193)
T d1af7a2         127 YNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS  172 (193)
T ss_dssp             CCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             cCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            34568899999999999988754 5899999999999999998644

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.39  E-value=3e-05  Score=68.84  Aligned_cols=101  Identities=18%  Similarity=0.174  Sum_probs=56.9

Q ss_pred             HHHHHHHhhhhcCCCCeeEEEecCCcceeeeeecc---CCCeeEEEeccCCCC-cchHHHHhh----ccccccccccccC
Q 017068          209 VAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALT---SDPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPF  280 (378)
Q Consensus       209 v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~---~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~w~~~f  280 (378)
                      +...++.+.  ++.|.  +|||+|||+|.+++.|.   ...-.|   +..+.. ..+..+-++    |+-.+..-.....
T Consensus        64 ~a~~l~~l~--l~~g~--~VLdiG~GtG~~s~~la~~~~~~g~V---~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~  136 (213)
T d1dl5a1          64 MALFMEWVG--LDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLV---VSVEYSRKICEIAKRNVERLGIENVIFVCGDGY  136 (213)
T ss_dssp             HHHHHHHTT--CCTTC--EEEEECCTTSHHHHHHHHHHCTTCEE---EEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG
T ss_pred             hHHHHHhhh--ccccc--eEEEecCccchhHHHHHHHhCCCCcE---EEeecchhhHHHhhhhHhhhcccccccccCchH
Confidence            333455554  66665  89999999999998875   233322   333333 344333332    3311111111122


Q ss_pred             CCC--CCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          281 STY--PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       281 ~ty--prtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      ..+  ..+||.|++...+..               +.-++=|.|+|||.+|+-
T Consensus       137 ~~~~~~~~fD~I~~~~~~~~---------------~p~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         137 YGVPEFSPYDVIFVTVGVDE---------------VPETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             GCCGGGCCEEEEEECSBBSC---------------CCHHHHHHEEEEEEEEEE
T ss_pred             HccccccchhhhhhhccHHH---------------hHHHHHHhcCCCcEEEEE
Confidence            222  368999999765542               223445789999999883

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.36  E-value=0.00019  Score=67.00  Aligned_cols=77  Identities=13%  Similarity=0.103  Sum_probs=55.5

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcCC--CeEEEEcccCCCCCCCCceeEEEecCccccccCC--hHHHHHHHhhcccCCc
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERGI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY--NATYLIEVDRLLRPGG   79 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~--~~~~L~Ev~RVLkPGG   79 (378)
                      +.|++++.++  ..+...+.+++++.  .+.+..++.+.+++++++||+|+|.....+....  ...++.++.|+|||||
T Consensus        62 ~~V~avd~s~--~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG  139 (328)
T d1g6q1_          62 KHVIGVDMSS--IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGG  139 (328)
T ss_dssp             SEEEEEESST--HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEE
T ss_pred             CEEEEEeCCH--HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCe
Confidence            4578888764  22333444455554  3677888999999999999999987655444332  2478899999999999


Q ss_pred             EEE
Q 017068           80 YLV   82 (378)
Q Consensus        80 ~lv   82 (378)
                      .++
T Consensus       140 ~ii  142 (328)
T d1g6q1_         140 LIF  142 (328)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.34  E-value=3.2e-05  Score=70.92  Aligned_cols=109  Identities=13%  Similarity=0.125  Sum_probs=66.8

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccC---CCeeEEEeccCCCC-cchHHHHhh----ccc----cccccccccCCCCCCcc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYDR----GLI----GVYHDWCEPFSTYPRTY  287 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~---~~vwvmnv~p~~~~-~~l~~i~eR----Gli----g~~~~w~~~f~typrty  287 (378)
                      |+.|  ..|||+|||+|+++.+|+.   ..-   .|.-.|.+ ..++.+.++    +..    -...|.++.++  ..+|
T Consensus        83 i~pG--~rVLEiG~GsG~lt~~la~~v~~~g---~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~--~~~f  155 (250)
T d1yb2a1          83 LRPG--MDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--DQMY  155 (250)
T ss_dssp             CCTT--CEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--SCCE
T ss_pred             CCCc--CEEEEeeeeCcHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc--ccee
Confidence            5555  4699999999999988863   222   12344544 566665543    322    13345666543  4789


Q ss_pred             ccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-HHHHHHHHHHHhcCCc
Q 017068          288 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRW  349 (378)
Q Consensus       288 DliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-~~~~~~~~~~~~~l~W  349 (378)
                      |.|.++ +-..             ..++-++-|+|||||.+++.-+ .+.+.++-+.++.--|
T Consensus       156 D~V~ld-~p~p-------------~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf  204 (250)
T d1yb2a1         156 DAVIAD-IPDP-------------WNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGM  204 (250)
T ss_dssp             EEEEEC-CSCG-------------GGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTE
T ss_pred             eeeeec-CCch-------------HHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCC
Confidence            999863 2222             3578899999999999998754 3334444333333334

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.23  E-value=0.00023  Score=66.20  Aligned_cols=77  Identities=12%  Similarity=0.135  Sum_probs=58.1

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcCCC--eEEEEcccCCCCCCCCceeEEEecCccccccCC--hHHHHHHHhhcccCCc
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERGIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY--NATYLIEVDRLLRPGG   79 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~--~~~~L~Ev~RVLkPGG   79 (378)
                      +.|++++.++.  .....+.+++.+..  +.+..++++.++++.++||+|+|.....+....  -..++.++.|+|||||
T Consensus        57 ~~V~avd~s~~--~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G  134 (316)
T d1oria_          57 RKVIGIECSSI--SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDG  134 (316)
T ss_dssp             SEEEEEECSTT--HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEE
T ss_pred             CEEEEEcCcHH--HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCe
Confidence            45888887653  45555566666654  678889999999999999999987655443332  2478899999999999


Q ss_pred             EEE
Q 017068           80 YLV   82 (378)
Q Consensus        80 ~lv   82 (378)
                      .++
T Consensus       135 ~ii  137 (316)
T d1oria_         135 LIF  137 (316)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            987

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00028  Score=65.14  Aligned_cols=78  Identities=9%  Similarity=0.042  Sum_probs=54.1

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHcCC--CeEEEEcccCCCCCCCCceeEEEecCccccccCC--hHHHHHHHhhcccCCc
Q 017068            4 ENILTLSFAPRDSHKAQIQFALERGI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY--NATYLIEVDRLLRPGG   79 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~erg~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~--~~~~L~Ev~RVLkPGG   79 (378)
                      +.|++++..+.  .....+.+++.+.  .+.+..++++.+++++++||+|+|....++....  ....+....|+|||||
T Consensus        59 ~~V~aid~s~~--~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G  136 (311)
T d2fyta1          59 KKVLGVDQSEI--LYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGG  136 (311)
T ss_dssp             SEEEEEESSTH--HHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEE
T ss_pred             CEEEEEeCHHH--HHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCc
Confidence            45788877652  2222333444443  3678889999999999999999987655444332  2366777889999999


Q ss_pred             EEEE
Q 017068           80 YLVI   83 (378)
Q Consensus        80 ~lvi   83 (378)
                      +++-
T Consensus       137 ~iip  140 (311)
T d2fyta1         137 SVYP  140 (311)
T ss_dssp             EEES
T ss_pred             EEec
Confidence            9973

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00036  Score=62.25  Aligned_cols=69  Identities=13%  Similarity=0.167  Sum_probs=52.6

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----C------CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----G------IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRL   74 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g------~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RV   74 (378)
                      .|+++++.     +.+++.|+++    +      ..+.+..+|+...+++++.||.|++..++.+.+       .++.+.
T Consensus       103 ~V~~ie~~-----~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~~~~~~~~ip-------~~l~~~  170 (224)
T d1i1na_         103 KVIGIDHI-----KELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVP-------QALIDQ  170 (224)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSSCC-------HHHHHT
T ss_pred             eEEEEcCC-----HHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhhhhhcchhhcC-------HHHHhh
Confidence            46666555     6788777654    2      235678889989999999999999988876543       467899


Q ss_pred             ccCCcEEEEEc
Q 017068           75 LRPGGYLVISG   85 (378)
Q Consensus        75 LkPGG~lvis~   85 (378)
                      |||||++++..
T Consensus       171 LkpGG~LV~pv  181 (224)
T d1i1na_         171 LKPGGRLILPV  181 (224)
T ss_dssp             EEEEEEEEEEE
T ss_pred             cCCCcEEEEEE
Confidence            99999999854

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00026  Score=66.92  Aligned_cols=70  Identities=13%  Similarity=0.077  Sum_probs=48.7

Q ss_pred             eEEEecCCCCChHHHHHHHHHcC----------------CCeEEEEcccCCCC--CCCCceeEEEecCccccccCChHHH
Q 017068            6 ILTLSFAPRDSHKAQIQFALERG----------------IPAFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFTAYNATY   67 (378)
Q Consensus         6 v~~ms~ap~D~se~~vq~A~erg----------------~~~~~~v~dae~LP--fpd~SFD~V~cs~~l~hw~~~~~~~   67 (378)
                      |+|+++     ++.+++.|+++-                -.+.+...|.....  +++.+||.|+.     +.+++. .+
T Consensus       126 V~t~E~-----~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~-~~  194 (324)
T d2b25a1         126 VISFEV-----RKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPH-VT  194 (324)
T ss_dssp             EEEEES-----SHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE-----CSSSTT-TT
T ss_pred             EEEecC-----CHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccccCCCCcceEee-----cCcCHH-HH
Confidence            555544     468888887741                13567777776554  57889999975     556666 89


Q ss_pred             HHHHhhcccCCcEEEEEcC
Q 017068           68 LIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        68 L~Ev~RVLkPGG~lvis~p   86 (378)
                      +.++.|+|||||.|++..|
T Consensus       195 l~~~~~~LKpGG~lv~~~P  213 (324)
T d2b25a1         195 LPVFYPHLKHGGVCAVYVV  213 (324)
T ss_dssp             HHHHGGGEEEEEEEEEEES
T ss_pred             HHHHHHhccCCCEEEEEeC
Confidence            9999999999999998776

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.94  E-value=0.00058  Score=61.21  Aligned_cols=73  Identities=14%  Similarity=0.155  Sum_probs=49.4

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC---CCeEEEEccc---CCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGT---RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg---~~~~~~v~da---e~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG   78 (378)
                      .|+|++++|     .+++.|+++.   ........++   +..+....+||+|++.  +.|..+.. .+++++.|+||||
T Consensus       100 ~V~aVD~s~-----~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d--~~~~~~~~-~~l~~~~~~Lkpg  171 (227)
T d1g8aa_         100 KIFGIEFSP-----RVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED--VAQPTQAK-ILIDNAEVYLKRG  171 (227)
T ss_dssp             EEEEEESCH-----HHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC--CCSTTHHH-HHHHHHHHHEEEE
T ss_pred             EEEEEeCcH-----HHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEE--ccccchHH-HHHHHHHHhcccC
Confidence            367777774     6777776641   1233444444   4445667889999874  33433344 8999999999999


Q ss_pred             cEEEEEc
Q 017068           79 GYLVISG   85 (378)
Q Consensus        79 G~lvis~   85 (378)
                      |+++++.
T Consensus       172 G~lvi~~  178 (227)
T d1g8aa_         172 GYGMIAV  178 (227)
T ss_dssp             EEEEEEE
T ss_pred             CeEEEEE
Confidence            9999874

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=96.91  E-value=0.00042  Score=63.55  Aligned_cols=65  Identities=14%  Similarity=0.187  Sum_probs=49.0

Q ss_pred             CChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           15 DSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        15 D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      |.++.+++.|+++    +..  +.+...|. ...|+...||.|+     +|.+++. .++.++.|+|||||++++..|
T Consensus       135 D~~~~~~~~A~~~~~~~g~~~~v~~~~~d~-~~~~~~~~~D~V~-----~d~p~p~-~~l~~~~~~LKpGG~lv~~~P  205 (266)
T d1o54a_         135 EKREEFAKLAESNLTKWGLIERVTIKVRDI-SEGFDEKDVDALF-----LDVPDPW-NYIDKCWEALKGGGRFATVCP  205 (266)
T ss_dssp             CCCHHHHHHHHHHHHHTTCGGGEEEECCCG-GGCCSCCSEEEEE-----ECCSCGG-GTHHHHHHHEEEEEEEEEEES
T ss_pred             eCCHHHHHHHHHHHHHhccccCcEEEeccc-cccccccceeeeE-----ecCCCHH-HHHHHHHhhcCCCCEEEEEeC
Confidence            3446888888775    432  34444554 3468889999986     4677887 999999999999999998776

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=96.85  E-value=0.00016  Score=66.40  Aligned_cols=110  Identities=15%  Similarity=0.144  Sum_probs=65.9

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccC---CCeeEEEeccCCCC-cchHHHHh----hcccc----ccccccccCCCCCCcc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYD----RGLIG----VYHDWCEPFSTYPRTY  287 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~---~~vwvmnv~p~~~~-~~l~~i~e----RGlig----~~~~w~~~f~typrty  287 (378)
                      +..|.  .|||+|||+|+++++|+.   ..--   |.-.|.+ .+++.+-+    .|+..    ...|-++.|+  ...|
T Consensus       101 i~pG~--~VLDiG~GsG~lt~~lA~~~~~~G~---V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~--~~~~  173 (266)
T d1o54a_         101 VKEGD--RIIDTGVGSGAMCAVLARAVGSSGK---VFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD--EKDV  173 (266)
T ss_dssp             CCTTC--EEEEECCTTSHHHHHHHHHTTTTCE---EEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS--CCSE
T ss_pred             CCCCC--EEEECCCCCCHHHHHHHHHhCCCcE---EEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccc--ccce
Confidence            55553  799999999999998863   2221   2344444 55544422    24422    1222233332  2677


Q ss_pred             ccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC-CHHHHHHHHHHHhcCCce
Q 017068          288 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVRWT  350 (378)
Q Consensus       288 DliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-~~~~~~~~~~~~~~l~W~  350 (378)
                      |.+..+              -.+...+|-++-|+|||||.+++-- +.+.++++-+.++...|.
T Consensus       174 D~V~~d--------------~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~  223 (266)
T d1o54a_         174 DALFLD--------------VPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI  223 (266)
T ss_dssp             EEEEEC--------------CSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred             eeeEec--------------CCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence            776542              1233578999999999999998764 455555555555555664

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.00017  Score=66.78  Aligned_cols=154  Identities=14%  Similarity=0.222  Sum_probs=92.0

Q ss_pred             cchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccC-C-CeeEEEeccCCCC-cchHHHHh----hcc--c
Q 017068          200 ADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS-D-PVWVMNVVPARKS-STLSVIYD----RGL--I  270 (378)
Q Consensus       200 ~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~-~-~vwvmnv~p~~~~-~~l~~i~e----RGl--i  270 (378)
                      .+|+.+-..+-.       .+.....| |||+|||+|..|.+|.. . +.   .|+.+|-+ ..+.++-+    -|+  +
T Consensus        92 peTE~lv~~~l~-------~~~~~~~~-vlDlGtGSG~I~i~la~~~p~~---~v~avDis~~Al~~A~~Na~~~~~~~v  160 (274)
T d2b3ta1          92 PDTECLVEQALA-------RLPEQPCR-ILDLGTGTGAIALALASERPDC---EIIAVDRMPDAVSLAQRNAQHLAIKNI  160 (274)
T ss_dssp             TTHHHHHHHHHH-------HSCSSCCE-EEEETCTTSHHHHHHHHHCTTS---EEEEECSSHHHHHHHHHHHHHHTCCSE
T ss_pred             cchhhhhhhHhh-------hhcccccc-eeeeehhhhHHHHHHHhhCCcc---eeeeccchhHHHhHHHHHHHHhCcccc
Confidence            356666554322       13334455 89999999999988853 2 33   56777765 55543322    232  2


Q ss_pred             c-ccccccccCCCCCCccccccccCccccccC----CC---CCCCCCC---------ccceeeeecccccCCCeEEEeCC
Q 017068          271 G-VYHDWCEPFSTYPRTYDLIHVSGIESLIKN----PG---SNKNSCS---------LVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       271 g-~~~~w~~~f~typrtyDliH~~~~~~~~~~----~~---~~~~~c~---------~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      - ...||-++++.  ..||+|-|+--+..-.+    ++   .+.....         +..++-+..+.|+|||++++-=.
T Consensus       161 ~~~~~d~~~~~~~--~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig  238 (274)
T d2b3ta1         161 HILQSDWFSALAG--QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG  238 (274)
T ss_dssp             EEECCSTTGGGTT--CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             eeeecccccccCC--CceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            2 45567766543  68999999744321100    00   0000000         12477888999999999999643


Q ss_pred             HHHHHHHHHHHhcCCce-EEE-ecCCCCCCCCeEEEEEE
Q 017068          334 PEVIDKVSRIANTVRWT-AAV-HDKEPGSNGREKILVAT  370 (378)
Q Consensus       334 ~~~~~~~~~~~~~l~W~-~~~-~~~~~~~~~~e~~l~~~  370 (378)
                      .+..+.+.+++++-.|. +.+ .|-    .+.+++++++
T Consensus       239 ~~q~~~v~~~l~~~gf~~i~~~kDl----~g~~R~v~~r  273 (274)
T d2b3ta1         239 WQQGEAVRQAFILAGYHDVETCRDY----GDNERVTLGR  273 (274)
T ss_dssp             SSCHHHHHHHHHHTTCTTCCEEECT----TSSEEEEEEE
T ss_pred             chHHHHHHHHHHHCCCCeEEEEECC----CCCceEEEEe
Confidence            34456778888877786 333 343    3689999885

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=96.67  E-value=0.00062  Score=62.80  Aligned_cols=157  Identities=12%  Similarity=0.138  Sum_probs=94.5

Q ss_pred             ccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hcc---c
Q 017068          199 EADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGL---I  270 (378)
Q Consensus       199 ~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGl---i  270 (378)
                      ..+|+.+-+.+-.|...-       ....++|+|||+|..+.++...+=.  +|+.+|-+ ..++++-+    -|+   +
T Consensus        92 RpeTE~lv~~~~~~~~~~-------~~~~vld~g~GsG~i~~~la~~~~~--~v~a~Dis~~Al~~A~~Na~~~~~~~~~  162 (271)
T d1nv8a_          92 RPETEELVELALELIRKY-------GIKTVADIGTGSGAIGVSVAKFSDA--IVFATDVSSKAVEIARKNAERHGVSDRF  162 (271)
T ss_dssp             CTTHHHHHHHHHHHHHHH-------TCCEEEEESCTTSHHHHHHHHHSSC--EEEEEESCHHHHHHHHHHHHHTTCTTSE
T ss_pred             hhhhhhhhhhhhhhhccc-------cccEEEEeeeeeehhhhhhhhcccc--eeeechhhhhHHHHHHHHHHHcCCCcee
Confidence            456888888777766532       3567999999999888877644421  45667765 55554443    244   3


Q ss_pred             ccc-ccccccCCCCCCccccccccCccccccCCCCCC------------CCCCccceeeeecccccCCCeEEEeCCHHHH
Q 017068          271 GVY-HDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNK------------NSCSLVDLMVEMDRMLRPEGTVVVRDSPEVI  337 (378)
Q Consensus       271 g~~-~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~------------~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~  337 (378)
                      -++ .+|-++++.....||+|-|+--...-.. ..+.            ....+..+--=+.++|+|||++++-=..+.-
T Consensus       163 ~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~-~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~  241 (271)
T d1nv8a_         163 FVRKGEFLEPFKEKFASIEMILSNPPYVKSSA-HLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQV  241 (271)
T ss_dssp             EEEESSTTGGGGGGTTTCCEEEECCCCBCGGG-SCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCH
T ss_pred             EEeecccccccccccCcccEEEEcccccCccc-ccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHH
Confidence            333 3566665544468999998743221110 0000            0011111100035789999999997555556


Q ss_pred             HHHHHHHhcCCceEEEecCCCCCCCCeEEEEEEec
Q 017068          338 DKVSRIANTVRWTAAVHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       338 ~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~  372 (378)
                      ++++++++..-|   ..|-    .+.+++++++|+
T Consensus       242 ~~v~~l~~~~g~---~kDl----~g~~R~~~~~k~  269 (271)
T d1nv8a_         242 EELKKIVSDTVF---LKDS----AGKYRFLLLNRR  269 (271)
T ss_dssp             HHHTTTSTTCEE---EECT----TSSEEEEEEECC
T ss_pred             HHHHHHHHhCCE---Eecc----CCCcEEEEEEEc
Confidence            677777776655   2343    378999999996

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=96.48  E-value=4.1e-05  Score=72.14  Aligned_cols=124  Identities=18%  Similarity=0.189  Sum_probs=69.4

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHH----hhcccc---ccc---cccccCCCCCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY----DRGLIG---VYH---DWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~----eRGlig---~~~---~w~~~f~typrtyDliH~~~  294 (378)
                      +.|||++||+|+|+.++....-   +|+..|.+ ..|..+-    ..|+-.   +-.   +|.+.++....+||+|-++-
T Consensus       147 ~rVLDl~~gtG~~s~~~a~g~~---~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp  223 (318)
T d1wxxa2         147 ERALDVFSYAGGFALHLALGFR---EVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP  223 (318)
T ss_dssp             EEEEEETCTTTHHHHHHHHHEE---EEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CeeeccCCCCcHHHHHHHhcCC---cEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence            6899999999999998875443   56777766 5554443    334411   111   22222333346899999863


Q ss_pred             c-cccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC------HHHHHHHHHHHhcCCceEEE
Q 017068          295 I-ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS------PEVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       295 ~-~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~------~~~~~~~~~~~~~l~W~~~~  353 (378)
                      - |+.-. ............++...=++|+|||.+++...      .+..+.+.+-+..-..+...
T Consensus       224 P~~~~~~-~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~  288 (318)
T d1wxxa2         224 PAFAKGK-KDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRV  288 (318)
T ss_dssp             CCSCCST-TSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             Cccccch-HHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEE
Confidence            2 22110 00000000112577788899999999999642      23444455555555545443

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.45  E-value=0.00022  Score=64.61  Aligned_cols=95  Identities=16%  Similarity=0.229  Sum_probs=65.3

Q ss_pred             hcC-CCCeeEEEecCCcceeeeeeccCC----CeeEEEeccCCCCcchHHHHhhcc----ccccccccccCCCCCCcccc
Q 017068          219 KLG-TPAIRNIMDMNAFFGGFAAALTSD----PVWVMNVVPARKSSTLSVIYDRGL----IGVYHDWCEPFSTYPRTYDL  289 (378)
Q Consensus       219 ~~~-~~~iR~vlDm~ag~g~faa~L~~~----~vwvmnv~p~~~~~~l~~i~eRGl----ig~~~~w~~~f~typrtyDl  289 (378)
                      ... ..+++.|+|+|||.|.++++|+++    .+.++.+     +   ++|-+.+.    --+-+|.-+++   | ..|+
T Consensus        75 ~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-----p---~vi~~~~~~~ri~~~~gd~~~~~---p-~~D~  142 (244)
T d1fp1d2          75 IYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-----P---QVIENAPPLSGIEHVGGDMFASV---P-QGDA  142 (244)
T ss_dssp             HCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-----H---HHHTTCCCCTTEEEEECCTTTCC---C-CEEE
T ss_pred             hcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-----h---hhhhccCCCCCeEEecCCccccc---c-cceE
Confidence            344 578999999999999999999743    2333332     2   22222222    22345654544   4 4599


Q ss_pred             ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      +...+++..|.     .+.|  ..+|-.+=+.|+|||.++|-|
T Consensus       143 ~~l~~vLh~~~-----de~~--~~iL~~~~~aL~pgg~llI~e  178 (244)
T d1fp1d2         143 MILKAVCHNWS-----DEKC--IEFLSNCHKALSPNGKVIIVE  178 (244)
T ss_dssp             EEEESSGGGSC-----HHHH--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEehhhhhCC-----HHHH--HHHHHHHHHHcCCCcEEEEEE
Confidence            99999999885     2334  578889999999999999975

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.001  Score=62.71  Aligned_cols=114  Identities=10%  Similarity=0.107  Sum_probs=60.2

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccC---CCeeEEEeccCCCC-cchHHHHhh----c----------c---cc-cccccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYDR----G----------L---IG-VYHDWC  277 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~---~~vwvmnv~p~~~~-~~l~~i~eR----G----------l---ig-~~~~w~  277 (378)
                      |..|.  .|||+|||+|+++.+|..   ..--|   .-.|-+ ..+..+.++    |          .   +- ...|.+
T Consensus        96 i~pG~--rVLE~GtGsG~lt~~LAr~vg~~G~V---~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~  170 (324)
T d2b25a1          96 INPGD--TVLEAGSGSGGMSLFLSKAVGSQGRV---ISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDIS  170 (324)
T ss_dssp             CCTTC--EEEEECCTTSHHHHHHHHHHCTTCEE---EEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTT
T ss_pred             CCCCC--EEEEecccccHHHHHHHHHhCCCcEE---EEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchh
Confidence            66765  699999999999998863   22212   333433 444443321    1          0   11 122333


Q ss_pred             ccCCCCC-CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC-CHHHHHHH-HHH-HhcCCceEE
Q 017068          278 EPFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKV-SRI-ANTVRWTAA  352 (378)
Q Consensus       278 ~~f~typ-rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-~~~~~~~~-~~~-~~~l~W~~~  352 (378)
                      ......+ .+||.|..+ +-..             ..+|=|+-|+|||||.+++-- +.+.+.++ +.| ...+.|...
T Consensus       171 ~~~~~~~~~~fD~V~LD-~p~P-------------~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i  235 (324)
T d2b25a1         171 GATEDIKSLTFDAVALD-MLNP-------------HVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCE  235 (324)
T ss_dssp             CCC-------EEEEEEC-SSST-------------TTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEE
T ss_pred             hcccccCCCCcceEeec-CcCH-------------HHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceee
Confidence            3222223 578877642 1111             236778999999999998754 34434443 333 235677543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.43  E-value=0.00042  Score=63.75  Aligned_cols=110  Identities=15%  Similarity=0.181  Sum_probs=63.3

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccC---CCeeEEEeccCCCC-cchHHHHhh--cc-ccc-------cccccccCCCCC-
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYDR--GL-IGV-------YHDWCEPFSTYP-  284 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~---~~vwvmnv~p~~~~-~~l~~i~eR--Gl-ig~-------~~~w~~~f~typ-  284 (378)
                      ++.|.  +|||.|||+|+++.+|+.   ..--   |.-.|.+ ..++.+-++  .+ -+.       ..|-.+  ..+| 
T Consensus        94 i~PG~--~VLE~G~GsG~lt~~La~~vgp~G~---V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~--~~~~~  166 (264)
T d1i9ga_          94 IFPGA--RVLEAGAGSGALTLSLLRAVGPAGQ---VISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD--SELPD  166 (264)
T ss_dssp             CCTTC--EEEEECCTTSHHHHHHHHHHCTTSE---EEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG--CCCCT
T ss_pred             CCCCC--EEEecCcCCcHHHHHHHHhhCCCcE---EEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc--ccccC
Confidence            56664  799999999999999863   2211   2333444 555555431  11 111       112222  2344 


Q ss_pred             CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-HHHH-HHHHHHHhcCCce
Q 017068          285 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVI-DKVSRIANTVRWT  350 (378)
Q Consensus       285 rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-~~~~-~~~~~~~~~l~W~  350 (378)
                      .+||.|.++ +-..             ..++-++-|+|||||.+++-.+ .+.+ +-++.+...-.|.
T Consensus       167 ~~fDaV~ld-lp~P-------------~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~  220 (264)
T d1i9ga_         167 GSVDRAVLD-MLAP-------------WEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT  220 (264)
T ss_dssp             TCEEEEEEE-SSCG-------------GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred             CCcceEEEe-cCCH-------------HHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCee
Confidence            799988763 2232             3578899999999999988654 4333 3344443333453

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=95.99  E-value=0.00092  Score=59.86  Aligned_cols=89  Identities=16%  Similarity=0.192  Sum_probs=50.9

Q ss_pred             cCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh--cc--ccc-cccccccCCCCC--Ccccccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR--GL--IGV-YHDWCEPFSTYP--RTYDLIH  291 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR--Gl--ig~-~~~w~~~f~typ--rtyDliH  291 (378)
                      ++.|.  .|||+|||+|-++|.|....-   .|+..+.. ..+..+-++  ..  +-+ ..|-   +.-+|  ..||.|+
T Consensus        68 l~~g~--~VLdIG~GsGy~ta~La~l~~---~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~---~~g~~~~~pfD~Ii  139 (224)
T d1vbfa_          68 LHKGQ--KVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYNNIKLILGDG---TLGYEEEKPYDRVV  139 (224)
T ss_dssp             CCTTC--EEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCSSEEEEESCG---GGCCGGGCCEEEEE
T ss_pred             hcccc--eEEEecCCCCHHHHHHHHHhc---ccccccccHHHHHHHHHHHhcccccccccCch---hhcchhhhhHHHHH
Confidence            66665  799999999999988765433   23444443 333333222  11  111 1111   11233  4699999


Q ss_pred             ccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      +......               +.-++=+.|+|||.+|+-
T Consensus       140 v~~a~~~---------------ip~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         140 VWATAPT---------------LLCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             ESSBBSS---------------CCHHHHHTEEEEEEEEEE
T ss_pred             hhcchhh---------------hhHHHHHhcCCCCEEEEE
Confidence            8755432               222334679999999873

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=95.83  E-value=0.0073  Score=53.73  Aligned_cols=68  Identities=9%  Similarity=0.044  Sum_probs=49.0

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc---CCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEE
Q 017068            5 NILTLSFAPRDSHKAQIQFALER---GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYL   81 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er---g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~l   81 (378)
                      .|+|+++     ++.+++.|+++   ..++.+..+|...-..+.+.||.|++..++.+.+       .++.+.|||||++
T Consensus        94 ~V~aiE~-----~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~ip-------~~l~~qLk~GGrL  161 (224)
T d1vbfa_          94 KVVSVEI-----NEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLL-------CKPYEQLKEGGIM  161 (224)
T ss_dssp             EEEEEES-----CHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEE
T ss_pred             ccccccc-----cHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhcchhhhh-------HHHHHhcCCCCEE
Confidence            4666654     46888888775   3356777888765545568899999988876543       3456789999999


Q ss_pred             EEE
Q 017068           82 VIS   84 (378)
Q Consensus        82 vis   84 (378)
                      ++-
T Consensus       162 V~p  164 (224)
T d1vbfa_         162 ILP  164 (224)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            984

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.00054  Score=61.04  Aligned_cols=98  Identities=16%  Similarity=0.116  Sum_probs=52.7

Q ss_pred             HHHhhhhcCCCCeeEEEecCCcceeeeeeccC---CCeeEEEeccCCCC-cchHHHH----hhcc--cc------ccccc
Q 017068          213 KNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIY----DRGL--IG------VYHDW  276 (378)
Q Consensus       213 ~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~---~~vwvmnv~p~~~~-~~l~~i~----eRGl--ig------~~~~w  276 (378)
                      .+.|...++.|  -.|||+|||+|-++|.|..   ..--|   +-.|.. ..+..+-    ..++  ++      ...|=
T Consensus        67 le~L~~~l~~g--~~VLdiG~GsGy~ta~la~l~~~~g~V---~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~  141 (224)
T d1i1na_          67 LELLFDQLHEG--AKALDVGSGSGILTACFARMVGCTGKV---IGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG  141 (224)
T ss_dssp             HHHTTTTSCTT--CEEEEETCTTSHHHHHHHHHHCTTCEE---EEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred             HHHHhhccCCC--CeEEEecCCCCHHHHHHHHHhCCCceE---EEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence            34444334554  3699999999988877653   23222   233433 3333222    2222  11      11121


Q ss_pred             cccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          277 CEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       277 ~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      .+. ++-...||.|++.....               .+.-++=|.|+|||.+|+-
T Consensus       142 ~~~-~~~~~~fD~I~~~~~~~---------------~ip~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         142 RMG-YAEEAPYDAIHVGAAAP---------------VVPQALIDQLKPGGRLILP  180 (224)
T ss_dssp             GGC-CGGGCCEEEEEECSBBS---------------SCCHHHHHTEEEEEEEEEE
T ss_pred             ccc-cchhhhhhhhhhhcchh---------------hcCHHHHhhcCCCcEEEEE
Confidence            111 11126899999975443               2334556889999999883

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.67  E-value=0.0024  Score=57.09  Aligned_cols=94  Identities=14%  Similarity=0.197  Sum_probs=61.3

Q ss_pred             CCeeEEEecCCcceeeeeeccCC----CeeEEEeccCCCCcchHHHHhh-ccccccccccccCCCCCCccccccccCccc
Q 017068          223 PAIRNIMDMNAFFGGFAAALTSD----PVWVMNVVPARKSSTLSVIYDR-GLIGVYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~faa~L~~~----~vwvmnv~p~~~~~~l~~i~eR-Glig~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      .+++.|+|+|||.|.++.+|+++    .+.+.-+     +..++.+-+. .+-.+-+|..+++|.    .|..-..+++.
T Consensus        80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-----p~vi~~~~~~~r~~~~~~d~~~~~P~----ad~~~l~~vlh  150 (243)
T d1kyza2          80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDL-----PHVIEDAPSYPGVEHVGGDMFVSIPK----ADAVFMKWICH  150 (243)
T ss_dssp             SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-----TTTTTTCCCCTTEEEEECCTTTCCCC----CSCEECSSSST
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEccc-----HHhhhhcccCCceEEecccccccCCC----cceEEEEEEee
Confidence            56999999999999999999743    2334333     3222221111 234567777776653    34444455666


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .|.     ...|  ..+|-++=+.|+|||.++|-|
T Consensus       151 ~~~-----d~~~--~~iL~~~~~al~pgg~~li~d  178 (243)
T d1kyza2         151 DWS-----DEHC--LKFLKNCYEALPDNGKVIVAE  178 (243)
T ss_dssp             TSC-----HHHH--HHHHHHHHHHCCSSSCEEEEE
T ss_pred             cCC-----HHHH--HHHHHHHHHhcCCCceEEEEE
Confidence            664     1233  578999999999999998864

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.00075  Score=60.14  Aligned_cols=131  Identities=18%  Similarity=0.156  Sum_probs=76.8

Q ss_pred             CCeeEEEecCCcceeeeeeccC---CCeeEEEeccCCCC-cc-hHHHHhhcc---cccc-ccccccCC-----CCCCccc
Q 017068          223 PAIRNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-ST-LSVIYDRGL---IGVY-HDWCEPFS-----TYPRTYD  288 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~faa~L~~---~~vwvmnv~p~~~~-~~-l~~i~eRGl---ig~~-~~w~~~f~-----typrtyD  288 (378)
                      -+-++||++|+|+|-=|.+|+.   .+--+..+-..... .. -+.+-+-|+   +-+. .+-.+.++     ..+.+||
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD  137 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  137 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence            4578999999999976666642   23333333332222 11 133333343   1111 12222221     1257899


Q ss_pred             cccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH---------------HHHHH-HHHHHhcCCceEE
Q 017068          289 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP---------------EVIDK-VSRIANTVRWTAA  352 (378)
Q Consensus       289 liH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~---------------~~~~~-~~~~~~~l~W~~~  352 (378)
                      +|..+.--+.|            ..++-++-|.|||||.+|+.+..               ..+.+ .+.|.+.-+|...
T Consensus       138 ~ifiD~dk~~y------------~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~  205 (219)
T d2avda1         138 VAVVDADKENC------------SAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYIS  205 (219)
T ss_dssp             EEEECSCSTTH------------HHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEE
T ss_pred             EEEEeCCHHHH------------HHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            99987444333            35566667999999999998631               12333 3556788899988


Q ss_pred             EecCCCCCCCCeEEEEEEe
Q 017068          353 VHDKEPGSNGREKILVATK  371 (378)
Q Consensus       353 ~~~~~~~~~~~e~~l~~~K  371 (378)
                      ..-.      ++++++|+|
T Consensus       206 llPi------gdGl~ia~K  218 (219)
T d2avda1         206 LLPL------GDGLTLAFK  218 (219)
T ss_dssp             EECS------TTCEEEEEE
T ss_pred             Eeec------CCeeEEEEe
Confidence            7644      346999988

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.61  E-value=0.0021  Score=55.60  Aligned_cols=42  Identities=17%  Similarity=0.362  Sum_probs=34.4

Q ss_pred             CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068          285 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS  333 (378)
Q Consensus       285 rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~  333 (378)
                      +.||+|-|-.++.++.       .-.-..++-.+-+.|+|||++++-.+
T Consensus       131 ~~fDvI~CRNVLiYf~-------~~~~~~vl~~l~~~L~pGG~L~lG~s  172 (193)
T d1af7a2         131 GPFDAIFCRNVMIYFD-------KTTQEDILRRFVPLLKPDGLLFAGHS  172 (193)
T ss_dssp             CCEEEEEECSSGGGSC-------HHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             CCccEEEeehhHHhcC-------HHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            7899999999999885       11224788889999999999999754

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.55  E-value=0.0029  Score=57.50  Aligned_cols=133  Identities=14%  Similarity=0.158  Sum_probs=78.4

Q ss_pred             CccccccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCC-eeEEEeccCCCC-cchHHHH----hh
Q 017068          194 GYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIY----DR  267 (378)
Q Consensus       194 ~~~~F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~-~~l~~i~----eR  267 (378)
                      +...|..+....+.++..       .++.|  .+||||+||+|+|+..++.++ .   .|...|-. ..++.+-    .-
T Consensus        86 ~~~~f~~~~~~er~ri~~-------~~~~g--~~VlD~~aG~G~~~l~~a~~~~~---~V~avd~n~~a~~~~~~N~~~n  153 (260)
T d2frna1          86 AKIMFSPANVKERVRMAK-------VAKPD--ELVVDMFAGIGHLSLPIAVYGKA---KVIAIEKDPYTFKFLVENIHLN  153 (260)
T ss_dssp             TTSCCCGGGHHHHHHHHH-------HCCTT--CEEEETTCTTTTTHHHHHHHTCC---EEEEECCCHHHHHHHHHHHHHT
T ss_pred             ccccEecCCHHHHHHHHh-------hcCCc--cEEEECcceEcHHHHHHHHhCCc---EEEEecCCHHHHHHHHHHHHHh
Confidence            344577777777766432       24445  479999999999988776444 3   34555543 4443332    22


Q ss_pred             cccc---cc-ccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-------HHH
Q 017068          268 GLIG---VY-HDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-------PEV  336 (378)
Q Consensus       268 Glig---~~-~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-------~~~  336 (378)
                      |+-+   ++ .|-.+ |+. ...||.|..+-...             -...|-+.=++|+|||++.+-+.       .+.
T Consensus       154 ~l~~~v~~~~~D~~~-~~~-~~~~D~Ii~~~p~~-------------~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~  218 (260)
T d2frna1         154 KVEDRMSAYNMDNRD-FPG-ENIADRILMGYVVR-------------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREP  218 (260)
T ss_dssp             TCTTTEEEECSCTTT-CCC-CSCEEEEEECCCSS-------------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTT
T ss_pred             CCCceEEEEEcchHH-hcc-CCCCCEEEECCCCc-------------hHHHHHHHHhhcCCCCEEEEEeccccccchhhH
Confidence            4422   22 22222 221 25788877542211             13455667789999999866431       235


Q ss_pred             HHHHHHHHhcCCceEEE
Q 017068          337 IDKVSRIANTVRWTAAV  353 (378)
Q Consensus       337 ~~~~~~~~~~l~W~~~~  353 (378)
                      .+.++++++...+++..
T Consensus       219 ~e~~~~~~~~~g~~v~~  235 (260)
T d2frna1         219 FETFKRITKEYGYDVEK  235 (260)
T ss_dssp             HHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHcCCceEE
Confidence            66777888887787764

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.38  E-value=0.0009  Score=65.11  Aligned_cols=22  Identities=5%  Similarity=0.018  Sum_probs=19.4

Q ss_pred             ccceeeeecccccCCCeEEEeC
Q 017068          311 LVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       311 ~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      +...|-||=|+|||||.+|..+
T Consensus       312 l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         312 LNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             HHHHHHHHHTTCCTTCEEEESS
T ss_pred             HHHHHHHHHHhcCCCcEEEEec
Confidence            4578999999999999999876

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.20  E-value=0.00055  Score=60.66  Aligned_cols=118  Identities=13%  Similarity=0.176  Sum_probs=66.6

Q ss_pred             CCeeEEEecCCcceeeeeeccC---CCeeEEEeccCCCC--cchHHHHhhcc---cc-ccccccccCCC----C-CCccc
Q 017068          223 PAIRNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS--STLSVIYDRGL---IG-VYHDWCEPFST----Y-PRTYD  288 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~faa~L~~---~~vwvmnv~p~~~~--~~l~~i~eRGl---ig-~~~~w~~~f~t----y-prtyD  288 (378)
                      -+-++||++|||+|..+.+|..   .+--+.++-.....  ..-..+-.-|+   |- ...+..+.++.    + ..+||
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D  134 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  134 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence            3568999999999988777753   33333343322111  11123334465   11 12222332222    2 26899


Q ss_pred             cccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-----HHHHHHHHHHHhcCCceEEE
Q 017068          289 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-----PEVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       289 liH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-----~~~~~~~~~~~~~l~W~~~~  353 (378)
                      +++.++..+.+.          ....+.|.-|+|||||.+|+.|.     .+.++.+++   .=.|+...
T Consensus       135 ~ifiD~~~~~~~----------~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~---~~~~~~~~  191 (214)
T d2cl5a1         135 MVFLDHWKDRYL----------PDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECTH  191 (214)
T ss_dssp             EEEECSCGGGHH----------HHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHH---CTTEEEEE
T ss_pred             eeeecccccccc----------cHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhc---cCceeehh
Confidence            999886555443          12356778899999999887762     445555543   34565543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.20  E-value=0.0043  Score=60.17  Aligned_cols=38  Identities=8%  Similarity=0.077  Sum_probs=29.3

Q ss_pred             ceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068           47 SFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        47 SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .+|+|++. +++|.++.. .+|.|+.|+|||||+++.+.+
T Consensus       297 ~adVV~in-n~~f~~~l~-~~L~ei~r~LKPGGrIVs~~~  334 (406)
T d1u2za_         297 QCDVILVN-NFLFDEDLN-KKVEKILQTAKVGCKIISLKS  334 (406)
T ss_dssp             GCSEEEEC-CTTCCHHHH-HHHHHHHTTCCTTCEEEESSC
T ss_pred             cceEEEEe-cccCchHHH-HHHHHHHHhcCCCcEEEEecc
Confidence            45777764 455666555 899999999999999988654

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.96  E-value=0.014  Score=51.70  Aligned_cols=69  Identities=13%  Similarity=0.155  Sum_probs=50.7

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----------CCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhc
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----------GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRL   74 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----------g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RV   74 (378)
                      .|+++++.     +..+++|+++          ..++.+..+|......+.+.||.|++..++.+.+       ..+.+.
T Consensus       112 ~V~~iE~~-----~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p-------~~l~~~  179 (223)
T d1r18a_         112 RIVGIEHQ-----AELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTP-------TELINQ  179 (223)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCSEEEEEECSCBSSCC-------HHHHHT
T ss_pred             EEEEEecC-----HHHHHHHHHhhhhcchhhcCccEEEEEecccccccccccceeeEEEEeechhch-------HHHHHh
Confidence            36666554     6777777664          1256778889888777888999999988775433       346789


Q ss_pred             ccCCcEEEEEc
Q 017068           75 LRPGGYLVISG   85 (378)
Q Consensus        75 LkPGG~lvis~   85 (378)
                      |||||++++..
T Consensus       180 Lk~gG~lV~pv  190 (223)
T d1r18a_         180 LASGGRLIVPV  190 (223)
T ss_dssp             EEEEEEEEEEE
T ss_pred             cCCCcEEEEEE
Confidence            99999998743

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.0016  Score=60.96  Aligned_cols=22  Identities=14%  Similarity=0.151  Sum_probs=19.0

Q ss_pred             ccceeeeecccccCCCeEEEeC
Q 017068          311 LVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       311 ~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      +...|.||=|+|+|||.+|..+
T Consensus       245 ~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         245 VDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             HHHHHHHHHTTCCTTCEEEESS
T ss_pred             HHHHHHHHHHhCCCCcEEEEec
Confidence            3578899999999999999864

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=94.66  E-value=0.012  Score=52.82  Aligned_cols=53  Identities=13%  Similarity=0.078  Sum_probs=42.1

Q ss_pred             eEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           31 AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        31 ~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +.+..+|.. -|.|  ..|++++++++|+|+++. ..+|+.+++.|+|||.+++...
T Consensus       126 i~~~~gd~~-~~~p--~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~  179 (244)
T d1fp1d2         126 IEHVGGDMF-ASVP--QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF  179 (244)
T ss_dssp             EEEEECCTT-TCCC--CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEecCCcc-cccc--cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            455666653 2455  349999999999998866 5789999999999999999754

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=94.35  E-value=0.006  Score=56.77  Aligned_cols=73  Identities=21%  Similarity=0.142  Sum_probs=47.6

Q ss_pred             CCChHHHHHHHHHc----CCC-eEEEEcccCC----CCCCCCceeEEEecCc-cccccC-------ChHHHHHHHhhccc
Q 017068           14 RDSHKAQIQFALER----GIP-AFVAMLGTRR----LPFPAFSFDIVHCSRC-LIPFTA-------YNATYLIEVDRLLR   76 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~~-~~~~v~dae~----LPfpd~SFD~V~cs~~-l~hw~~-------~~~~~L~Ev~RVLk   76 (378)
                      .|.|+.+++.|+++    |+. +.+..+|+..    ++...+.||+|++.-= +..-..       .-..++..+.++||
T Consensus       173 vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLk  252 (318)
T d1wxxa2         173 VDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLK  252 (318)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEE
T ss_pred             ecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcC
Confidence            34446778777764    553 6677777533    5566789999997421 100000       01257788999999


Q ss_pred             CCcEEEEEcC
Q 017068           77 PGGYLVISGP   86 (378)
Q Consensus        77 PGG~lvis~p   86 (378)
                      |||.+++++-
T Consensus       253 pGG~Lv~~sc  262 (318)
T d1wxxa2         253 EGGILATASC  262 (318)
T ss_dssp             EEEEEEEEEC
T ss_pred             CCCEEEEEeC
Confidence            9999998764

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.23  E-value=0.00064  Score=63.70  Aligned_cols=123  Identities=14%  Similarity=0.142  Sum_probs=64.9

Q ss_pred             cccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHH----hhccccc
Q 017068          198 FEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY----DRGLIGV  272 (378)
Q Consensus       198 F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~----eRGlig~  272 (378)
                      |-.|+..-+..+.       ..+..|  .+|||++||+|+|+.+++..+.-  .|+..|.+ ..+..+-    .-|+-..
T Consensus       128 ~flDqr~~r~~~~-------~~~~~g--~~VLDl~~g~G~~si~~a~~ga~--~V~~vD~s~~al~~a~~N~~~ngl~~~  196 (324)
T d2as0a2         128 FFLDQRENRLALE-------KWVQPG--DRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDR  196 (324)
T ss_dssp             CCSTTHHHHHHHG-------GGCCTT--CEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGG
T ss_pred             cccchhhHHHHHH-------hhcCCC--CeeecccCcccchhhhhhhcCCc--EEEeecCCHHHHHHHHHHHHHcCCCcc
Confidence            4445555444442       224444  37999999999999988655421  23444544 4444332    2344222


Q ss_pred             cc-------cccccCCCCCCccccccccCc-cccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          273 YH-------DWCEPFSTYPRTYDLIHVSGI-ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       273 ~~-------~w~~~f~typrtyDliH~~~~-~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      .+       +|-+.++--..+||+|-++-- |+.-.. ...........++...=|+|+|||.+++..
T Consensus       197 ~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~-~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s  263 (324)
T d2as0a2         197 MKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEK-DLKAGLRAYFNVNFAGLNLVKDGGILVTCS  263 (324)
T ss_dssp             EEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGG-GHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ceeeechhhhhhHHHHhccCCCCchhcCCccccCCHH-HHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            22       122222223468999987532 221100 000000112347777789999999999974

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.11  E-value=0.00078  Score=56.10  Aligned_cols=97  Identities=15%  Similarity=0.183  Sum_probs=52.2

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hccc---cccc-cccccCCCCCCccccccccCcc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLI---GVYH-DWCEPFSTYPRTYDLIHVSGIE  296 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGli---g~~~-~w~~~f~typrtyDliH~~~~~  296 (378)
                      .+|||++||+|+||...+.++.=  +|.-.|.. ..+..+-+    -|+-   -+++ |..+.+......||+|.++--|
T Consensus        16 ~~vlDl~~GtG~~~iea~~rga~--~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy   93 (152)
T d2esra1          16 GRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY   93 (152)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred             CeEEEcCCccCHHHHHHHHhCcc--eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence            37999999999999654444321  45666654 44433222    2331   2222 2222223334789999886443


Q ss_pred             ccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068          297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD  332 (378)
Q Consensus       297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d  332 (378)
                      ....      ....+ +.+.+ .++|+|||.+|+..
T Consensus        94 ~~~~------~~~~l-~~i~~-~~~L~~~g~iiiE~  121 (152)
T d2esra1          94 AKET------IVATI-EALAA-KNLLSEQVMVVCET  121 (152)
T ss_dssp             HHHH------HHHHH-HHHHH-TTCEEEEEEEEEEE
T ss_pred             ccch------HHHHH-HHHHH-CCCcCCCeEEEEEe
Confidence            3111      00111 22222 47999999999863

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.73  E-value=0.0064  Score=53.21  Aligned_cols=66  Identities=14%  Similarity=0.017  Sum_probs=39.9

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-cc-ccccccccCCCCCCccccccccCccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-IG-VYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig-~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      ++|||+|||+|.+|-++...+.-  +|+-+|.. .++..+-+.-- +. +..|.    ...|..||+|-++--|.
T Consensus        50 k~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N~~~~~~~~~D~----~~l~~~fD~Vi~NPPfg  118 (197)
T d1ne2a_          50 RSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNCGGVNFMVADV----SEISGKYDTWIMNPPFG  118 (197)
T ss_dssp             SEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHCTTSEEEECCG----GGCCCCEEEEEECCCC-
T ss_pred             CEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHccccccEEEEeh----hhcCCcceEEEeCcccc
Confidence            58999999999987555443321  45666655 66665544321 12 12222    33568899998876664

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.72  E-value=0.022  Score=52.74  Aligned_cols=75  Identities=20%  Similarity=0.180  Sum_probs=50.2

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccC----CCCCCCCceeEEEecCccccccCC----------h
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTR----RLPFPAFSFDIVHCSRCLIPFTAY----------N   64 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae----~LPfpd~SFD~V~cs~~l~hw~~~----------~   64 (378)
                      .|++++++     +..++.|+++    |+.  +.+..+|+.    .++.....||+|++.-=  .+...          -
T Consensus       170 ~V~~vD~s-----~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP--~~~~~~~~~~~~~~~y  242 (324)
T d2as0a2         170 EVIGIDKS-----PRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPP--AFVQHEKDLKAGLRAY  242 (324)
T ss_dssp             EEEEEESC-----HHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC--CSCSSGGGHHHHHHHH
T ss_pred             EEEeecCC-----HHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcCCc--cccCCHHHHHHHHHHH
Confidence            46777666     5677777664    553  567777753    34567789999997421  11111          0


Q ss_pred             HHHHHHHhhcccCCcEEEEEcC
Q 017068           65 ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        65 ~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      ..++..+.++|||||.+++++.
T Consensus       243 ~~l~~~a~~ll~pGG~lv~~s~  264 (324)
T d2as0a2         243 FNVNFAGLNLVKDGGILVTCSC  264 (324)
T ss_dssp             HHHHHHHHTTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHcCCCcEEEEEeC
Confidence            2478888999999999999765

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.50  E-value=0.021  Score=49.45  Aligned_cols=116  Identities=9%  Similarity=0.041  Sum_probs=65.2

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-cccccc-ccccCCCCCCccccccccCccccccCC
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-IGVYHD-WCEPFSTYPRTYDLIHVSGIESLIKNP  302 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig~~~~-w~~~f~typrtyDliH~~~~~~~~~~~  302 (378)
                      .+|||+|||+|++|.++..++-  .+|+..|.. ..+..+.+.-- .+.-.+ .+.-...++..||+|-++--|....  
T Consensus        48 ~~vLDlg~GtG~l~i~a~~~g~--~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~~~~--  123 (201)
T d1wy7a1          48 KVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR--  123 (201)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS--
T ss_pred             CEEEECcCcchHHHHHHHHcCC--CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCcccccc--
Confidence            3799999999999876655542  145566655 56655554311 111111 1122234567899998876654322  


Q ss_pred             CCCCCCCCccceeeeecccccCCCeEEE--eCCHHHHHHHHHHHhcCCceEEE
Q 017068          303 GSNKNSCSLVDLMVEMDRMLRPEGTVVV--RDSPEVIDKVSRIANTVRWTAAV  353 (378)
Q Consensus       303 ~~~~~~c~~~~~l~EmDRiLRPgG~~ii--~d~~~~~~~~~~~~~~l~W~~~~  353 (378)
                          ....+..    ..+.+.+++.+..  .......+-++++++...|.+..
T Consensus       124 ----~~~d~~~----l~~~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~  168 (201)
T d1wy7a1         124 ----KHADRPF----LLKAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTH  168 (201)
T ss_dssp             ----TTTTHHH----HHHHHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEE
T ss_pred             ----ccccHHH----HHHHHhhcccchhcccchHHHHHHHHHHHhhcCceEEE
Confidence                2222222    2244555655433  34455666677888888887654

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=92.90  E-value=0.011  Score=55.11  Aligned_cols=149  Identities=15%  Similarity=0.124  Sum_probs=79.3

Q ss_pred             hcCCCCeeEEEecCCcceeeeeeccCCC-eeEEEeccCCCC-cchHHHHhh------cc-----cc-ccccccccCCCCC
Q 017068          219 KLGTPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDR------GL-----IG-VYHDWCEPFSTYP  284 (378)
Q Consensus       219 ~~~~~~iR~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~-~~l~~i~eR------Gl-----ig-~~~~w~~~f~typ  284 (378)
                      ++....-++||.+|.|.|+.+..++..+ +  .+|.-++-. ..++++-+.      |.     +- +..|..+-+...+
T Consensus        72 l~~~~~pk~VLiiG~G~G~~~~~ll~~~~~--~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~  149 (312)
T d1uira_          72 MLTHPEPKRVLIVGGGEGATLREVLKHPTV--EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTE  149 (312)
T ss_dssp             HHHSSCCCEEEEEECTTSHHHHHHTTSTTC--CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCC
T ss_pred             hhhCCCcceEEEeCCCchHHHHHHHhcCCc--ceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcC
Confidence            3445678999999999999998887653 3  244444433 333333221      11     11 2234443333456


Q ss_pred             CccccccccCccccccCCCCCCCCCCc--cceeeeecccccCCCeEEEeC------CHHHHHHHHHHHhcCCceEEEecC
Q 017068          285 RTYDLIHVSGIESLIKNPGSNKNSCSL--VDLMVEMDRMLRPEGTVVVRD------SPEVIDKVSRIANTVRWTAAVHDK  356 (378)
Q Consensus       285 rtyDliH~~~~~~~~~~~~~~~~~c~~--~~~l~EmDRiLRPgG~~ii~d------~~~~~~~~~~~~~~l~W~~~~~~~  356 (378)
                      +.||+|..+.. ..+.   .......+  ...+-.+-|.|+|||.++..-      ..++...+.+.+++.=-.+.....
T Consensus       150 ~~yDvIi~D~~-dp~~---~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~  225 (312)
T d1uira_         150 ERYDVVIIDLT-DPVG---EDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKN  225 (312)
T ss_dssp             CCEEEEEEECC-CCBS---TTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEE
T ss_pred             CcccEEEEeCC-Cccc---ccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEe
Confidence            89999986531 1111   00000111  245567899999999998852      234556665555444444443211


Q ss_pred             CCCCC-CCeEEEEEEecC
Q 017068          357 EPGSN-GREKILVATKSL  373 (378)
Q Consensus       357 ~~~~~-~~e~~l~~~K~~  373 (378)
                      --.+. +.-.+++|.|..
T Consensus       226 ~vPs~~~~w~f~~aS~~~  243 (312)
T d1uira_         226 HIPGFFLNFGFLLASDAF  243 (312)
T ss_dssp             EEGGGTEEEEEEEEESSS
T ss_pred             eeCCcCCCCEeEEEeCCC
Confidence            10011 234578888753

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.77  E-value=0.013  Score=51.81  Aligned_cols=94  Identities=20%  Similarity=0.279  Sum_probs=49.8

Q ss_pred             cCCCCeeEEEecCCcceeeeeecc---CCCeeEEEeccCCCCcchHHHHhhccccccccccccCCCCC--CccccccccC
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALT---SDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYP--RTYDLIHVSG  294 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~---~~~vwvmnv~p~~~~~~l~~i~eRGlig~~~~w~~~f~typ--rtyDliH~~~  294 (378)
                      ++.|.  +|||+|||+|-++|.|.   ...|.++-+.+.-....-+.+.+.|+--+.--....+.-+|  ..||.|++..
T Consensus        76 l~~g~--~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~  153 (215)
T d1jg1a_          76 LKPGM--NILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTA  153 (215)
T ss_dssp             CCTTC--CEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred             cCccc--eEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeec
Confidence            66665  89999999999998775   32343332221100011122233344211111111122233  6799999976


Q ss_pred             ccccccCCCCCCCCCCccceeeeecccccCCCeEEE
Q 017068          295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV  330 (378)
Q Consensus       295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii  330 (378)
                      ......            .-|++   -|+|||.+|+
T Consensus       154 a~~~ip------------~~l~~---qL~~gGrLv~  174 (215)
T d1jg1a_         154 GAPKIP------------EPLIE---QLKIGGKLII  174 (215)
T ss_dssp             BBSSCC------------HHHHH---TEEEEEEEEE
T ss_pred             ccccCC------------HHHHH---hcCCCCEEEE
Confidence            554321            22333   4899999986

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.47  E-value=0.0059  Score=54.22  Aligned_cols=29  Identities=21%  Similarity=0.172  Sum_probs=20.6

Q ss_pred             HHHhhhhcCCCCeeEEEecCCcceeeeeecc
Q 017068          213 KNTLNVKLGTPAIRNIMDMNAFFGGFAAALT  243 (378)
Q Consensus       213 ~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~  243 (378)
                      .+.|...++.|  -.|||+|||+|-++|.|.
T Consensus        71 l~~L~~~l~~g--~~VLeIGtGsGY~ta~la   99 (223)
T d1r18a_          71 LEYLRDHLKPG--ARILDVGSGSGYLTACFY   99 (223)
T ss_dssp             HHHTTTTCCTT--CEEEEESCTTSHHHHHHH
T ss_pred             HHHHhhccCCC--CeEEEecCCCCHHHHHHH
Confidence            33343335555  489999999999998885

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=92.45  E-value=0.021  Score=53.06  Aligned_cols=122  Identities=16%  Similarity=0.192  Sum_probs=61.7

Q ss_pred             eEEEecCCcceeeeeecc-CCCeeEEEeccCCCC-cchHHHHh-hccccccc--------cccccCCCCCCccccccccC
Q 017068          226 RNIMDMNAFFGGFAAALT-SDPVWVMNVVPARKS-STLSVIYD-RGLIGVYH--------DWCEPFSTYPRTYDLIHVSG  294 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~-~~~vwvmnv~p~~~~-~~l~~i~e-RGlig~~~--------~w~~~f~typrtyDliH~~~  294 (378)
                      +.|||+.||+|+|+-++. ....-|.+|-..... ......++ .|+-..-|        +|-..+..-.+.||+|-++-
T Consensus       146 ~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DP  225 (317)
T d2b78a2         146 KTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDP  225 (317)
T ss_dssp             CEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEEcC
Confidence            589999999999986654 344445555332222 22222222 34411111        12211222246899998862


Q ss_pred             c-cccccCCCCCCCCCC----ccceeeeecccccCCCeEEEeCC------HHHHHHHHHHHhcCCceEE
Q 017068          295 I-ESLIKNPGSNKNSCS----LVDLMVEMDRMLRPEGTVVVRDS------PEVIDKVSRIANTVRWTAA  352 (378)
Q Consensus       295 ~-~~~~~~~~~~~~~c~----~~~~l~EmDRiLRPgG~~ii~d~------~~~~~~~~~~~~~l~W~~~  352 (378)
                      - |+.-+     +..-.    ...++-..=++|+|||.+++...      .+....+.+.+..-.....
T Consensus       226 P~f~~~~-----~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~  289 (317)
T d2b78a2         226 PSFARNK-----KEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYL  289 (317)
T ss_dssp             CCC----------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEE
T ss_pred             hhhccch-----hHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEE
Confidence            2 33111     11111    12455556688999999999742      2334445554444445544

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=92.27  E-value=0.0028  Score=56.94  Aligned_cols=94  Identities=16%  Similarity=0.235  Sum_probs=59.0

Q ss_pred             CCeeEEEecCCcceeeeeeccCC----CeeEEEeccCCCCcchHHHHh-hccccccccccccCCCCCCccccccccCccc
Q 017068          223 PAIRNIMDMNAFFGGFAAALTSD----PVWVMNVVPARKSSTLSVIYD-RGLIGVYHDWCEPFSTYPRTYDLIHVSGIES  297 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~faa~L~~~----~vwvmnv~p~~~~~~l~~i~e-RGlig~~~~w~~~f~typrtyDliH~~~~~~  297 (378)
                      .++++|+|+|||.|.++.+++++    .+.+...     +..++.+-. ..+--+-||.-++.   | .+|++...+++.
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-----p~vi~~~~~~~rv~~~~gD~f~~~---p-~aD~~~l~~vLH  149 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-----PQVVENLSGSNNLTYVGGDMFTSI---P-NADAVLLKYILH  149 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-----HHHHTTCCCBTTEEEEECCTTTCC---C-CCSEEEEESCGG
T ss_pred             cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-----HHHHHhCcccCceEEEecCcccCC---C-CCcEEEEEeecc
Confidence            56899999999999999998643    2333332     221111100 11222334543332   3 579999999999


Q ss_pred             cccCCCCCCCCCCccceeeeecccccCC---CeEEEeC
Q 017068          298 LIKNPGSNKNSCSLVDLMVEMDRMLRPE---GTVVVRD  332 (378)
Q Consensus       298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPg---G~~ii~d  332 (378)
                      .|.     .+.|  ..||--+-+.|+||   |-++|-|
T Consensus       150 dw~-----d~~~--~~iL~~~~~al~pgg~~~~lli~e  180 (244)
T d1fp2a2         150 NWT-----DKDC--LRILKKCKEAVTNDGKRGKVTIID  180 (244)
T ss_dssp             GSC-----HHHH--HHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             cCC-----hHHH--HHHHHHHHHHcCcccCCcEEEEEE
Confidence            986     2333  46777788899999   5566654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.13  E-value=0.037  Score=48.68  Aligned_cols=70  Identities=17%  Similarity=0.245  Sum_probs=50.1

Q ss_pred             CCeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068            4 ENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG   78 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG   78 (378)
                      ..|++++..     +.++++|+++    |+ ++.+..+|......+.+.||.|++.-+..+.++       .+..-||||
T Consensus       102 ~~V~~ie~~-----~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~ip~-------~l~~qL~~g  169 (215)
T d1jg1a_         102 TDVYTIERI-----PELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPE-------PLIEQLKIG  169 (215)
T ss_dssp             SCEEEEESC-----HHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCH-------HHHHTEEEE
T ss_pred             ceeEEEecc-----HHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeecccccCCH-------HHHHhcCCC
Confidence            347777666     4677777664    43 467888888777777899999999877755332       245579999


Q ss_pred             cEEEEEc
Q 017068           79 GYLVISG   85 (378)
Q Consensus        79 G~lvis~   85 (378)
                      |++++-.
T Consensus       170 GrLv~pv  176 (215)
T d1jg1a_         170 GKLIIPV  176 (215)
T ss_dssp             EEEEEEE
T ss_pred             CEEEEEE
Confidence            9999743

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=91.99  E-value=0.11  Score=47.14  Aligned_cols=90  Identities=12%  Similarity=0.129  Sum_probs=56.9

Q ss_pred             CCChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEecCcccc------------ccCC------------h
Q 017068           14 RDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIP------------FTAY------------N   64 (378)
Q Consensus        14 ~D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~h------------w~~~------------~   64 (378)
                      .|+|+..++.|+++    ++. +.+..+|... +++++.||+|+|+-=.+.            +...            -
T Consensus       138 vDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~  216 (274)
T d2b3ta1         138 VDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADI  216 (274)
T ss_dssp             ECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHH
T ss_pred             ccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHH
Confidence            34556778877775    554 6777777533 577889999999732211            0000            0


Q ss_pred             HHHHHHHhhcccCCcEEEEEcCCCCCCccchHHHHHHHHHHHhceee
Q 017068           65 ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYEL  111 (378)
Q Consensus        65 ~~~L~Ev~RVLkPGG~lvis~pp~~~~~~~~~w~~l~~l~~~lcw~~  111 (378)
                      .+.+.++.+.|+|||.+++-..+      .+ -+.+..++....|..
T Consensus       217 ~~i~~~a~~~L~~~G~l~lEig~------~q-~~~v~~~l~~~gf~~  256 (274)
T d2b3ta1         217 VHIIEQSRNALVSGGFLLLEHGW------QQ-GEAVRQAFILAGYHD  256 (274)
T ss_dssp             HHHHHHHGGGEEEEEEEEEECCS------SC-HHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHhcCCCCEEEEEECc------hH-HHHHHHHHHHCCCCe
Confidence            25889999999999999985431      11 245666666555543

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.96  E-value=0.046  Score=47.69  Aligned_cols=71  Identities=20%  Similarity=0.322  Sum_probs=46.4

Q ss_pred             CeEEEecCCCCChHHHHHHHHH----cCCC--eEEEEcccCC-C-----CCCCCceeEEEecCccccccCCh--HHHHHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALE----RGIP--AFVAMLGTRR-L-----PFPAFSFDIVHCSRCLIPFTAYN--ATYLIE   70 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~e----rg~~--~~~~v~dae~-L-----Pfpd~SFD~V~cs~~l~hw~~~~--~~~L~E   70 (378)
                      .|+++++.|     .+++.|++    .|+.  +.+..+++.. |     .+..+.||+|+..    |+.+..  ...+.|
T Consensus        83 ~v~sid~~~-----~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD----~~~~~~~~~~~l~~  153 (214)
T d2cl5a1          83 RLLTMEMNP-----DYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLD----HWKDRYLPDTLLLE  153 (214)
T ss_dssp             EEEEEESCH-----HHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEEEEC----SCGGGHHHHHHHHH
T ss_pred             EEEEEeccH-----HHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccceeeec----ccccccccHHHHHH
Confidence            367777654     55666654    3543  6777877543 2     2567899999975    333322  245788


Q ss_pred             HhhcccCCcEEEEE
Q 017068           71 VDRLLRPGGYLVIS   84 (378)
Q Consensus        71 v~RVLkPGG~lvis   84 (378)
                      ..|+|||||.+++-
T Consensus       154 ~~~lLkpGGvIv~D  167 (214)
T d2cl5a1         154 KCGLLRKGTVLLAD  167 (214)
T ss_dssp             HTTCEEEEEEEEES
T ss_pred             HhCccCCCcEEEEe
Confidence            99999999987763

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=91.62  E-value=0.0011  Score=57.18  Aligned_cols=141  Identities=14%  Similarity=0.173  Sum_probs=66.9

Q ss_pred             eeEEEecCCcceeeeeeccCC-----CeeEEEeccCCCCcchHHHHhhccccccccccccCC-CCCCccccccccCcccc
Q 017068          225 IRNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFS-TYPRTYDLIHVSGIESL  298 (378)
Q Consensus       225 iR~vlDm~ag~g~faa~L~~~-----~vwvmnv~p~~~~~~l~~i~eRGlig~~~~w~~~f~-typrtyDliH~~~~~~~  298 (378)
                      -.+|+|+||+-|||.-++.++     .|+..-+.|.+.-...  ..-.|-++...+...... .....+|+|-|+..+..
T Consensus        23 ~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~--~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~  100 (180)
T d1ej0a_          23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGV--DFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNM  100 (180)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTE--EEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCC
T ss_pred             CCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCc--eEeecccccchhhhhhhhhccCcceeEEEecccchh
Confidence            457999999999998876531     2333333333221111  111111111111100000 11246899998876542


Q ss_pred             ccCCCCCCCCCCcc---ceeeeecccccCCCeEEEe-----CCHHHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEEEE
Q 017068          299 IKNPGSNKNSCSLV---DLMVEMDRMLRPEGTVVVR-----DSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVAT  370 (378)
Q Consensus       299 ~~~~~~~~~~c~~~---~~l~EmDRiLRPgG~~ii~-----d~~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~  370 (378)
                      .-+. ...+.-.+.   ..|.=..++|+|||.||+-     ++.+.+..++...++++.-.-  .+ .-+.+.|.+|||+
T Consensus       101 sg~~-~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~~F~~V~~~KP--~a-SR~~SsE~Ylv~~  176 (180)
T d1ej0a_         101 SGTP-AVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKP--DS-SRARSREVYIVAT  176 (180)
T ss_dssp             CSCH-HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEEEEEEECC--TT-SCTTCCEEEEEEE
T ss_pred             cccc-hhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHhhcCEEEEECC--CC-cccCCceEEEEEe
Confidence            1100 000000011   1222246899999999984     223445555544443332111  11 2245789999997


Q ss_pred             e
Q 017068          371 K  371 (378)
Q Consensus       371 K  371 (378)
                      .
T Consensus       177 g  177 (180)
T d1ej0a_         177 G  177 (180)
T ss_dssp             E
T ss_pred             c
Confidence            5

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.57  E-value=0.078  Score=45.64  Aligned_cols=75  Identities=16%  Similarity=0.223  Sum_probs=51.7

Q ss_pred             CeEEEecCCCCChHHHHHHHHHcC----CCeEEEEcccCCC-----CCCCCceeEEEecCcc--c-------cccCChHH
Q 017068            5 NILTLSFAPRDSHKAQIQFALERG----IPAFVAMLGTRRL-----PFPAFSFDIVHCSRCL--I-------PFTAYNAT   66 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~erg----~~~~~~v~dae~L-----Pfpd~SFD~V~cs~~l--~-------hw~~~~~~   66 (378)
                      .|+++|..     +.|++.|+++.    ..+.+..++...+     .+..++||.|+.-..+  .       .+... ..
T Consensus        49 ~vi~~D~d-----~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~-~~  122 (192)
T d1m6ya2          49 RIIGIDVD-----SEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENL-KE  122 (192)
T ss_dssp             EEEEEESC-----HHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHH-HH
T ss_pred             eEEEeech-----HHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhH-HH
Confidence            45666655     68999999863    3456666654443     4667899999865443  1       12222 27


Q ss_pred             HHHHHhhcccCCcEEEEEc
Q 017068           67 YLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        67 ~L~Ev~RVLkPGG~lvis~   85 (378)
                      .|.++.++|+|||.+++..
T Consensus       123 ~L~~a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2         123 FLKKAEDLLNPGGRIVVIS  141 (192)
T ss_dssp             HHHHGGGGEEEEEEEEEEE
T ss_pred             HHHHHHHhcCCCCeeeeec
Confidence            8999999999999998755

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=91.45  E-value=0.087  Score=46.77  Aligned_cols=54  Identities=15%  Similarity=0.040  Sum_probs=42.6

Q ss_pred             CeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCC---cEEEEEcC
Q 017068           30 PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPG---GYLVISGP   86 (378)
Q Consensus        30 ~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPG---G~lvis~p   86 (378)
                      .+.+..+|... |.|  .+|++++.+++|+|.++. .+.|+.+++.|+||   |++++...
T Consensus       124 rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~  181 (244)
T d1fp2a2         124 NLTYVGGDMFT-SIP--NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM  181 (244)
T ss_dssp             TEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             ceEEEecCccc-CCC--CCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence            35666777643 444  479999999999999876 58899999999999   77877654

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=91.26  E-value=0.049  Score=50.46  Aligned_cols=78  Identities=10%  Similarity=0.126  Sum_probs=48.3

Q ss_pred             CCeEEEecCCCCChHHHHHHHHH----cCC---CeEEEEcccC----CCCCCCCceeEEEec---C-----ccccccCCh
Q 017068            4 ENILTLSFAPRDSHKAQIQFALE----RGI---PAFVAMLGTR----RLPFPAFSFDIVHCS---R-----CLIPFTAYN   64 (378)
Q Consensus         4 ~~v~~ms~ap~D~se~~vq~A~e----rg~---~~~~~v~dae----~LPfpd~SFD~V~cs---~-----~l~hw~~~~   64 (378)
                      +.|+++++++.     .++.|++    +++   .+.+..+|+.    .+.-..+.||+|++-   +     .+......-
T Consensus       168 ~~V~~vD~s~~-----a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~  242 (317)
T d2b78a2         168 MATTSVDLAKR-----SRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDY  242 (317)
T ss_dssp             SEEEEEESCTT-----HHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHH
T ss_pred             ceEEEecCCHH-----HHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHH
Confidence            35788888764     4444443    344   3567778762    223346789999973   1     111111111


Q ss_pred             HHHHHHHhhcccCCcEEEEEcC
Q 017068           65 ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        65 ~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      ..+++.+.++|+|||.+++++-
T Consensus       243 ~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         243 HKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             HHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHcCCCCEEEEEeC
Confidence            2578888999999999999765

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=91.21  E-value=0.077  Score=45.61  Aligned_cols=43  Identities=14%  Similarity=0.107  Sum_probs=28.6

Q ss_pred             CCCCceeEEEecCc----cccccC---------ChHHHHHHHhhcccCCcEEEEEc
Q 017068           43 FPAFSFDIVHCSRC----LIPFTA---------YNATYLIEVDRLLRPGGYLVISG   85 (378)
Q Consensus        43 fpd~SFD~V~cs~~----l~hw~~---------~~~~~L~Ev~RVLkPGG~lvis~   85 (378)
                      +||+|+|+|+.+==    -..|..         .-...+.|+.|+|+|||.+++..
T Consensus        19 lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~   74 (256)
T d1g60a_          19 VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN   74 (256)
T ss_dssp             SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence            57889999987520    011111         11257889999999999888654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.09  E-value=0.079  Score=46.16  Aligned_cols=55  Identities=22%  Similarity=0.382  Sum_probs=36.7

Q ss_pred             EEEEcccCCC--CCCCCceeEEEecC----ccccccCC------hHHHHHHHhhcccCCcEEEEEcC
Q 017068           32 FVAMLGTRRL--PFPAFSFDIVHCSR----CLIPFTAY------NATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        32 ~~~v~dae~L--Pfpd~SFD~V~cs~----~l~hw~~~------~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .+.++|...+  -+||+|+|+|+.+=    ....|...      ....+.|+.|+|||||.+++...
T Consensus         6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~   72 (279)
T d1eg2a_           6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG   72 (279)
T ss_dssp             EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence            4566664332  37899999998763    11122111      13678899999999999998654

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=90.84  E-value=0.1  Score=45.47  Aligned_cols=129  Identities=11%  Similarity=0.059  Sum_probs=75.3

Q ss_pred             chHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeee--eeccCCCeeEEEeccCCCC----cch-HHHHhhcc--cc
Q 017068          201 DSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFA--AALTSDPVWVMNVVPARKS----STL-SVIYDRGL--IG  271 (378)
Q Consensus       201 d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~fa--a~L~~~~vwvmnv~p~~~~----~~l-~~i~eRGl--ig  271 (378)
                      ....|.+++-+=.. +.+.+..+   +++|+|+|-|==|  -|....+.   +|+-.|+.    .=| .++.+=||  +-
T Consensus        46 ~~~~~~rHi~DSl~-~~~~~~~~---~ilDiGsGaG~PGi~laI~~p~~---~~~Lves~~KK~~FL~~~~~~L~L~nv~  118 (207)
T d1jsxa_          46 PNEMLVRHILDSIV-VAPYLQGE---RFIDVGTGPGLPGIPLSIVRPEA---HFTLLDSLGKRVRFLRQVQHELKLENIE  118 (207)
T ss_dssp             --CHHHHHHHHHHH-HGGGCCSS---EEEEETCTTTTTHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCSSEE
T ss_pred             HHHHHHHHhcchHh-hhhhhcCC---ceeeeeccCCceeeehhhhcccc---eEEEEecchHHHHHHHHHHHHcCCccee
Confidence            34567665544333 22345433   7999999966222  22233333   33444443    222 55666677  45


Q ss_pred             ccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceE
Q 017068          272 VYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTA  351 (378)
Q Consensus       272 ~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~  351 (378)
                      ++|...|.+.. ...||.|-| |.|+.+            ..++--.-+.|+|||.+++--.....++++.+-  -.|+.
T Consensus       119 v~~~R~E~~~~-~~~fD~V~s-RA~~~~------------~~ll~~~~~~l~~~g~~~~~KG~~~~eEl~~~~--~~~~~  182 (207)
T d1jsxa_         119 PVQSRVEEFPS-EPPFDGVIS-RAFASL------------NDMVSWCHHLPGEQGRFYALKGQMPEDEIALLP--EEYQV  182 (207)
T ss_dssp             EEECCTTTSCC-CSCEEEEEC-SCSSSH------------HHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSC--TTEEE
T ss_pred             eeccchhhhcc-ccccceehh-hhhcCH------------HHHHHHHHHhcCCCcEEEEECCCCHHHHHHhhh--cCCEE
Confidence            68887776642 248998754 666644            355555678899999999986665556665543  36655


Q ss_pred             E
Q 017068          352 A  352 (378)
Q Consensus       352 ~  352 (378)
                      .
T Consensus       183 ~  183 (207)
T d1jsxa_         183 E  183 (207)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.48  E-value=0.35  Score=43.13  Aligned_cols=69  Identities=10%  Similarity=0.177  Sum_probs=47.6

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG   78 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG   78 (378)
                      .|+++++.|     ..++.|+++    ++.  +.+..+|+..++- .+.||.|++..     +.....++.++.++|+||
T Consensus       132 ~V~avd~n~-----~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~-----p~~~~~~l~~a~~~l~~g  200 (260)
T d2frna1         132 KVIAIEKDP-----YTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGY-----VVRTHEFIPKALSIAKDG  200 (260)
T ss_dssp             EEEEECCCH-----HHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECC-----CSSGGGGHHHHHHHEEEE
T ss_pred             EEEEecCCH-----HHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECC-----CCchHHHHHHHHhhcCCC
Confidence            467776665     566666553    553  5677788877654 67899998642     122236789999999999


Q ss_pred             cEEEEE
Q 017068           79 GYLVIS   84 (378)
Q Consensus        79 G~lvis   84 (378)
                      |.+.+.
T Consensus       201 G~lh~~  206 (260)
T d2frna1         201 AIIHYH  206 (260)
T ss_dssp             EEEEEE
T ss_pred             CEEEEE
Confidence            998664

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=90.41  E-value=0.023  Score=48.30  Aligned_cols=92  Identities=14%  Similarity=0.033  Sum_probs=50.1

Q ss_pred             EEEecCCcceeeeeeccCCCeeEEEeccCCCC----cchHHHHhhcccc----ccccccccCCCCCCccccccccCcccc
Q 017068          227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS----STLSVIYDRGLIG----VYHDWCEPFSTYPRTYDLIHVSGIESL  298 (378)
Q Consensus       227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~----~~l~~i~eRGlig----~~~~w~~~f~typrtyDliH~~~~~~~  298 (378)
                      +|||+.||+|++|-..+++...  .|+-+|..    ..+.-.+++.-+.    +..|.-.-+......||+|-++--+. 
T Consensus        46 ~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~-  122 (183)
T d2fpoa1          46 QCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR-  122 (183)
T ss_dssp             EEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS-
T ss_pred             hhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc-
Confidence            6999999999999766666543  23334433    3333333432211    11111111223347899999864322 


Q ss_pred             ccCCCCCCCCCCccc---eeeeecccccCCCeEEEe
Q 017068          299 IKNPGSNKNSCSLVD---LMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       299 ~~~~~~~~~~c~~~~---~l~EmDRiLRPgG~~ii~  331 (378)
                               ....+.   .|.+ -.+|.|+|.+|+.
T Consensus       123 ---------~~~~~~~l~~l~~-~~~L~~~~iIiiE  148 (183)
T d2fpoa1         123 ---------RGLLEETINLLED-NGWLADEALIYVE  148 (183)
T ss_dssp             ---------TTTHHHHHHHHHH-TTCEEEEEEEEEE
T ss_pred             ---------cchHHHHHHHHHH-CCCCCCCeEEEEE
Confidence                     122222   2232 3579999999995

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=90.19  E-value=0.23  Score=44.24  Aligned_cols=157  Identities=14%  Similarity=0.106  Sum_probs=92.5

Q ss_pred             ccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeec--cCCCeeEEEeccCCCC----cch-HHHHhhcc--
Q 017068          199 EADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAAL--TSDPVWVMNVVPARKS----STL-SVIYDRGL--  269 (378)
Q Consensus       199 ~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L--~~~~vwvmnv~p~~~~----~~l-~~i~eRGl--  269 (378)
                      ......|.+++-+=.. +.+.+....-.+++|+|+|-|==|--|  ...+.   +|.-.|+.    +=| .++.+=||  
T Consensus        46 ~~~~~i~~rHi~DSl~-~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~---~v~Lves~~KK~~FL~~v~~~L~L~n  121 (239)
T d1xdza_          46 TEKKEVYLKHFYDSIT-AAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLEN  121 (239)
T ss_dssp             CSHHHHHHHTHHHHHG-GGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSS
T ss_pred             CCHHHHHHHhccchhh-hhhhhcccCCCeEEeecCCCchHHHHHHHhCCCc---cceeecchHHHHHHHHHHHHHhCCCC
Confidence            3345677776654332 223344345678999999966323222  22233   33444442    233 45556677  


Q ss_pred             ccccccccccCCC---CCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC---HHHHHHHHHH
Q 017068          270 IGVYHDWCEPFST---YPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS---PEVIDKVSRI  343 (378)
Q Consensus       270 ig~~~~w~~~f~t---yprtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~---~~~~~~~~~~  343 (378)
                      +-++|..-|.+..   +...||+|-| +-|+.+            ..++-=....|+|||.+++--.   .+.+++.++.
T Consensus       122 ~~i~~~R~E~~~~~~~~~~~~D~v~s-RAva~l------------~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~  188 (239)
T d1xdza_         122 TTFCHDRAETFGQRKDVRESYDIVTA-RAVARL------------SVLSELCLPLVKKNGLFVALKAASAEEELNAGKKA  188 (239)
T ss_dssp             EEEEESCHHHHTTCTTTTTCEEEEEE-ECCSCH------------HHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHH
T ss_pred             cEEEeehhhhccccccccccceEEEE-hhhhCH------------HHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHH
Confidence            3467877776543   3357998876 555543            4566666899999999999744   4566666777


Q ss_pred             HhcCCceEEE---ecCCCCCCCCeEEEEEEecC
Q 017068          344 ANTVRWTAAV---HDKEPGSNGREKILVATKSL  373 (378)
Q Consensus       344 ~~~l~W~~~~---~~~~~~~~~~e~~l~~~K~~  373 (378)
                      .+.+.++...   ... +...+.-.+++.+|.-
T Consensus       189 ~~~~~~~~~~v~~~~l-p~~~~~r~lv~i~K~~  220 (239)
T d1xdza_         189 ITTLGGELENIHSFKL-PIEESDRNIMVIRKIK  220 (239)
T ss_dssp             HHHTTEEEEEEEEEEC-TTTCCEEEEEEEEECS
T ss_pred             HHHcCCEEEEEEEEeC-CCCCCCEEEEEEEECC
Confidence            7788887643   222 1222344677777653

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=88.81  E-value=0.033  Score=49.37  Aligned_cols=132  Identities=14%  Similarity=0.142  Sum_probs=70.7

Q ss_pred             CCeeEEEecCCcceeeeeecc---CCCeeEEEeccCCCC--cchHHHHhhcccc---c-cccccccCCC------CCCcc
Q 017068          223 PAIRNIMDMNAFFGGFAAALT---SDPVWVMNVVPARKS--STLSVIYDRGLIG---V-YHDWCEPFST------YPRTY  287 (378)
Q Consensus       223 ~~iR~vlDm~ag~g~faa~L~---~~~vwvmnv~p~~~~--~~l~~i~eRGlig---~-~~~w~~~f~t------yprty  287 (378)
                      .+-++||.+|+++|-=+..|.   +.+--+..+-.....  -.-+.+-.-|+-.   + ..+-.+.++.      .+.+|
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f  137 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  137 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence            368899999999996555543   233333333322222  1113333335411   1 1111111221      35689


Q ss_pred             ccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH--------------HH----HHHHH----HHHh
Q 017068          288 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP--------------EV----IDKVS----RIAN  345 (378)
Q Consensus       288 DliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~--------------~~----~~~~~----~~~~  345 (378)
                      |+|-.+.-=.            +...++-..-++|||||.+|+.+..              ..    .+.++    .+..
T Consensus       138 D~iFiDa~k~------------~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~  205 (227)
T d1susa1         138 DFIFVDADKD------------NYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAV  205 (227)
T ss_dssp             SEEEECSCST------------THHHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEeccchh------------hhHHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhc
Confidence            9987753222            2234444556899999999998531              11    12232    2355


Q ss_pred             cCCceEEEecCCCCCCCCeEEEEEEec
Q 017068          346 TVRWTAAVHDKEPGSNGREKILVATKS  372 (378)
Q Consensus       346 ~l~W~~~~~~~~~~~~~~e~~l~~~K~  372 (378)
                      .=+|++......      +++++|+|-
T Consensus       206 d~r~~~~llPig------DGl~i~~K~  226 (227)
T d1susa1         206 DPRIEICMLPVG------DGITICRRI  226 (227)
T ss_dssp             CTTBCCEEECST------TCEEEECBC
T ss_pred             CCCEEEEEeecC------CeeEEEEEC
Confidence            567888776543      459999883

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=88.28  E-value=0.21  Score=43.85  Aligned_cols=53  Identities=11%  Similarity=0.036  Sum_probs=40.3

Q ss_pred             eEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068           31 AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        31 ~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      +.+..+|... |.|.  .|.++...++++|.+.. ..+|+++.+.|+|||.+++...
T Consensus       126 ~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~  179 (243)
T d1kyza2         126 VEHVGGDMFV-SIPK--ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAEC  179 (243)
T ss_dssp             EEEEECCTTT-CCCC--CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred             eEEecccccc-cCCC--cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence            4555566432 4554  36677889999998765 6899999999999999998754

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.38  E-value=0.16  Score=45.89  Aligned_cols=104  Identities=18%  Similarity=0.176  Sum_probs=56.2

Q ss_pred             hcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCCcchHHHHhhccccc-------------------ccccccc
Q 017068          219 KLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGV-------------------YHDWCEP  279 (378)
Q Consensus       219 ~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~~~l~~i~eRGlig~-------------------~~~w~~~  279 (378)
                      +....+-++||-+|+|.|+.+..++..+.--+-+|-.|. ..++++-  ...+.                   ..|-.+-
T Consensus        67 l~~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~-~Vi~~a~--~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~  143 (276)
T d1mjfa_          67 MLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDE-DVIMVSK--DLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF  143 (276)
T ss_dssp             HHHSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCH-HHHHHHH--HHTCTTTTHHHHHHTTCCSSEEEEESCHHHH
T ss_pred             hhcCCCCceEEEecCCchHHHHHHHHhCCceEEEecCCH-HHHHHHH--HhhhhccchhhhhhccCCCCceEEEChHHHH
Confidence            345567899999999999999888877753222232221 2223221  11110                   0010000


Q ss_pred             CCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068          280 FSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR  331 (378)
Q Consensus       280 f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~  331 (378)
                      ..+ .++||+|-.+- +....   ....-.. ...+-.+.|.|+|||.++..
T Consensus       144 l~~-~~~yDvIi~D~-~~~~~---~~~~L~t-~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         144 IKN-NRGFDVIIADS-TDPVG---PAKVLFS-EEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             HHH-CCCEEEEEEEC-CCCC--------TTS-HHHHHHHHHHEEEEEEEEEE
T ss_pred             Hhc-cCCCCEEEEeC-CCCCC---CcccccC-HHHHHhhHhhcCCCceEEEe
Confidence            011 36899997652 32211   1111111 34567799999999999985

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.65  E-value=0.4  Score=41.72  Aligned_cols=72  Identities=18%  Similarity=0.180  Sum_probs=46.6

Q ss_pred             CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCC-CC-----CCCCceeEEEecCccccccCChHHHHHHHh
Q 017068            5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRR-LP-----FPAFSFDIVHCSRCLIPFTAYNATYLIEVD   72 (378)
Q Consensus         5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~-LP-----fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~   72 (378)
                      .|+|++..|     ...+.|++.    |..  +.+.++++.. ++     ..+++||+|+..    |..+.-...+.++.
T Consensus        86 ~i~tie~~~-----~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD----~dk~~y~~~~~~~~  156 (219)
T d2avda1          86 RVVTCEVDA-----QPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVD----ADKENCSAYYERCL  156 (219)
T ss_dssp             EEEEEESCS-----HHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEEC----SCSTTHHHHHHHHH
T ss_pred             eEEEEeech-----hHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEEEEe----CCHHHHHHHHHHHH
Confidence            466666665     334444432    432  5667776522 32     357899999964    33343347889999


Q ss_pred             hcccCCcEEEEEc
Q 017068           73 RLLRPGGYLVISG   85 (378)
Q Consensus        73 RVLkPGG~lvis~   85 (378)
                      +.|+|||.+++-.
T Consensus       157 ~lL~~GGvii~Dn  169 (219)
T d2avda1         157 QLLRPGGILAVLR  169 (219)
T ss_dssp             HHEEEEEEEEEEC
T ss_pred             HHhcCCcEEEEeC
Confidence            9999999999854

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=85.12  E-value=0.17  Score=45.93  Aligned_cols=151  Identities=11%  Similarity=0.054  Sum_probs=74.5

Q ss_pred             cCCCCeeEEEecCCcceeeeeecc----CCCeeEEEeccCCCC-cchHHHHhh----cc-cc-ccccccccCCCCCCccc
Q 017068          220 LGTPAIRNIMDMNAFFGGFAAALT----SDPVWVMNVVPARKS-STLSVIYDR----GL-IG-VYHDWCEPFSTYPRTYD  288 (378)
Q Consensus       220 ~~~~~iR~vlDm~ag~g~faa~L~----~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig-~~~~w~~~f~typrtyD  288 (378)
                      +....--+|+|.+||+|+|..++.    ++...-.++.-.|-. ..+.++.-.    |. .. ..++.-+..+  ...||
T Consensus       113 ~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~fD  190 (328)
T d2f8la1         113 IQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLL--VDPVD  190 (328)
T ss_dssp             HTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCC--CCCEE
T ss_pred             hCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccc--ccccc
Confidence            344456789999999999987764    233233355555543 333332211    22 11 2233333222  26899


Q ss_pred             cccccCccccccCCCC--------CCCCCCccce-eeeecccccCCCeEEE--eCC---HHHHHHHHHHHhcCCceEEEe
Q 017068          289 LIHVSGIESLIKNPGS--------NKNSCSLVDL-MVEMDRMLRPEGTVVV--RDS---PEVIDKVSRIANTVRWTAAVH  354 (378)
Q Consensus       289 liH~~~~~~~~~~~~~--------~~~~c~~~~~-l~EmDRiLRPgG~~ii--~d~---~~~~~~~~~~~~~l~W~~~~~  354 (378)
                      +|-+.--|+.....+.        ....-++..+ +.-+-+.|+|||.+++  .+.   ...-..+++..-.-++-..+.
T Consensus       191 ~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii  270 (328)
T d2f8la1         191 VVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGII  270 (328)
T ss_dssp             EEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEE
T ss_pred             ccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCcEEEEE
Confidence            9999877754321000        0000011122 3346789999997644  332   123345555433333333332


Q ss_pred             cCC----CCCCCCeEEEEEEec
Q 017068          355 DKE----PGSNGREKILVATKS  372 (378)
Q Consensus       355 ~~~----~~~~~~e~~l~~~K~  372 (378)
                      +-.    .++...--|||.+|+
T Consensus       271 ~lp~~~F~~~~~~t~ilvl~K~  292 (328)
T d2f8la1         271 KLPETLFKSEQARKSILILEKA  292 (328)
T ss_dssp             ECCGGGSCC-CCCEEEEEEEEC
T ss_pred             ECCccccCCCCCCeEEEEEECC
Confidence            211    123345568888875

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=85.03  E-value=0.12  Score=47.84  Aligned_cols=122  Identities=13%  Similarity=0.070  Sum_probs=65.5

Q ss_pred             eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cccccccccccc--------CCCCCCccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEP--------FSTYPRTYDLIHV  292 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~w~~~--------f~typrtyDliH~  292 (378)
                      +.|||+.||+|+|+.++....-   .|+-+|.+ ..+..+-+.    |+-..-|.+...        +-...+.||+|-+
T Consensus       134 ~rVLdlf~~tG~~sl~aa~~GA---~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil  210 (309)
T d2igta1         134 LKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  210 (309)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             CeEEEecCCCcHHHHHHHhCCC---eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence            5899999999999999887765   45667776 555544332    443222333221        1112368999998


Q ss_pred             cCc-cccccCCCCCCCCC--CccceeeeecccccCCCeEEEeC------CHHHH-HHHHHHHhcCCceEE
Q 017068          293 SGI-ESLIKNPGSNKNSC--SLVDLMVEMDRMLRPEGTVVVRD------SPEVI-DKVSRIANTVRWTAA  352 (378)
Q Consensus       293 ~~~-~~~~~~~~~~~~~c--~~~~~l~EmDRiLRPgG~~ii~d------~~~~~-~~~~~~~~~l~W~~~  352 (378)
                      +-- |..-.  .......  .+..++-.+=++|+|||.+++..      +...+ +.+.+.+..-...+.
T Consensus       211 DPP~f~~~~--~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ag~~v~  278 (309)
T d2igta1         211 DPPKFGRGT--HGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA  278 (309)
T ss_dssp             CCCSEEECT--TCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred             CCCcccccc--cchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcce
Confidence            633 32111  0000000  01123334567999999766542      22233 334555555555553

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.38  E-value=0.3  Score=44.01  Aligned_cols=70  Identities=13%  Similarity=0.067  Sum_probs=45.1

Q ss_pred             CChHHHHHHHHHc---------------CCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh----HHHHHHHhhcc
Q 017068           15 DSHKAQIQFALER---------------GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN----ATYLIEVDRLL   75 (378)
Q Consensus        15 D~se~~vq~A~er---------------g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~----~~~L~Ev~RVL   75 (378)
                      |+.+.+++.|++-               ...+.+..+|+...--.++.||+|++-. ..+.....    ..+++.+.|.|
T Consensus       102 EiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L  180 (276)
T d1mjfa_         102 EIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFDVIIADS-TDPVGPAKVLFSEEFYRYVYDAL  180 (276)
T ss_dssp             ESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEEEEEEEC-CCCC-----TTSHHHHHHHHHHE
T ss_pred             cCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCCCEEEEeC-CCCCCCcccccCHHHHHhhHhhc
Confidence            4556899998863               1235677777532211367899998633 33322221    37899999999


Q ss_pred             cCCcEEEEEc
Q 017068           76 RPGGYLVISG   85 (378)
Q Consensus        76 kPGG~lvis~   85 (378)
                      +|||.++...
T Consensus       181 ~~~Gv~v~q~  190 (276)
T d1mjfa_         181 NNPGIYVTQA  190 (276)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCceEEEec
Confidence            9999999754

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.16  E-value=0.0089  Score=51.87  Aligned_cols=119  Identities=18%  Similarity=0.159  Sum_probs=62.8

Q ss_pred             eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhhcc-----c----cccccccccCCCCC-Ccccccccc
Q 017068          226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGL-----I----GVYHDWCEPFSTYP-RTYDLIHVS  293 (378)
Q Consensus       226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eRGl-----i----g~~~~w~~~f~typ-rtyDliH~~  293 (378)
                      .+++|++||+||++.++++. |-  ..|...|.. .++..+-+|.-     +    +-+.++-+-+..++ ..+|-|=.+
T Consensus        25 ~~~lD~t~G~Gghs~~il~~~~~--~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~D  102 (192)
T d1m6ya2          25 KIILDCTVGEGGHSRAILEHCPG--CRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMD  102 (192)
T ss_dssp             CEEEETTCTTSHHHHHHHHHCTT--CEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred             CEEEEecCCCcHHHHHHHhcCCC--CeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceeeec
Confidence            38899999999999998764 21  256777765 77877766532     1    22222211112222 345544332


Q ss_pred             CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH-HHHHHHHHHHhc
Q 017068          294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANT  346 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-~~~~~~~~~~~~  346 (378)
                      --.|.++=......-..+...|-++=++|+|||.+++-.-. ..-..++++++.
T Consensus       103 lGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~  156 (192)
T d1m6ya2         103 LGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRN  156 (192)
T ss_dssp             CSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             cchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhh
Confidence            11111100000001122346777888999999999665432 222345555443

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.13  E-value=0.27  Score=45.48  Aligned_cols=147  Identities=12%  Similarity=0.129  Sum_probs=73.5

Q ss_pred             hcCCCCeeEEEecCCcceeeeeeccCCC-eeEEEeccCCCC-cchHHHHhh--ccccccc---------cccccCCCCCC
Q 017068          219 KLGTPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDR--GLIGVYH---------DWCEPFSTYPR  285 (378)
Q Consensus       219 ~~~~~~iR~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~-~~l~~i~eR--Glig~~~---------~w~~~f~typr  285 (378)
                      ++....-++||-+|.|.|+.+..+++.+ +-  +|.-++-- .-+.++-+-  ..-+.+.         |-.+-+-..++
T Consensus       101 l~~~~~pk~VLIiGgG~G~~~rellk~~~v~--~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~  178 (312)
T d2b2ca1         101 MFAHPDPKRVLIIGGGDGGILREVLKHESVE--KVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKN  178 (312)
T ss_dssp             HHHSSSCCEEEEESCTTSHHHHHHTTCTTCC--EEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTT
T ss_pred             HhcCCCCCeEEEeCCCchHHHHHHHHcCCcc--eEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCC
Confidence            3445678999999999999999998754 42  33333332 222222110  0001111         11111123357


Q ss_pred             ccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-----HHHHHHHHHHHhcCCceEEEecC--CC
Q 017068          286 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-----PEVIDKVSRIANTVRWTAAVHDK--EP  358 (378)
Q Consensus       286 tyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-----~~~~~~~~~~~~~l~W~~~~~~~--~~  358 (378)
                      .||+|-.+-. ...    .....---...+-.+.|+|+|||.++....     .+.+..+.+..++.=..+.....  ..
T Consensus       179 ~yDvII~D~~-dp~----~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~~vPt  253 (312)
T d2b2ca1         179 EFDVIITDSS-DPV----GPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVST  253 (312)
T ss_dssp             CEEEEEECCC------------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTT
T ss_pred             CCCEEEEcCC-CCC----CcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeeeccCC
Confidence            8999988632 211    111111113456678999999999999742     34444444444443334443221  11


Q ss_pred             CCCCCeEEEEEEec
Q 017068          359 GSNGREKILVATKS  372 (378)
Q Consensus       359 ~~~~~e~~l~~~K~  372 (378)
                      -+.+.-.+++|.|.
T Consensus       254 yp~G~w~f~~aSk~  267 (312)
T d2b2ca1         254 YPSGSMGYLICAKN  267 (312)
T ss_dssp             SGGGEEEEEEEESS
T ss_pred             cCCccceeeEEECC
Confidence            11234457888774

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=83.46  E-value=0.17  Score=42.25  Aligned_cols=99  Identities=16%  Similarity=0.188  Sum_probs=56.0

Q ss_pred             hcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHH----hhcccc-ccccccccC---CCC-CCccc
Q 017068          219 KLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY----DRGLIG-VYHDWCEPF---STY-PRTYD  288 (378)
Q Consensus       219 ~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~----eRGlig-~~~~w~~~f---~ty-prtyD  288 (378)
                      .+..|.  .|||++||+|++|...+++..   .|+-.|.. ..++.+-    .-|+-. +..--+..|   ... ...||
T Consensus        38 ~~~~g~--~vLDl~~G~G~~~i~a~~~ga---~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD  112 (171)
T d1ws6a1          38 RYPRRG--RFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFT  112 (171)
T ss_dssp             HCTTCC--EEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEE
T ss_pred             cccCCC--eEEEeccccchhhhhhhhccc---hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccc
Confidence            344454  699999999999988777776   44556665 4554332    223311 121112111   111 15799


Q ss_pred             cccccCccccccCCCCCCCCCCccceeeee--cccccCCCeEEEeCC
Q 017068          289 LIHVSGIESLIKNPGSNKNSCSLVDLMVEM--DRMLRPEGTVVVRDS  333 (378)
Q Consensus       289 liH~~~~~~~~~~~~~~~~~c~~~~~l~Em--DRiLRPgG~~ii~d~  333 (378)
                      +|-++--|..           ++..++.++  -.+|.|||.+|+..+
T Consensus       113 ~If~DPPY~~-----------~~~~~l~~l~~~~ll~~~g~ivie~~  148 (171)
T d1ws6a1         113 VAFMAPPYAM-----------DLAALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             EEEECCCTTS-----------CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             eeEEcccccc-----------CHHHHHHHHHHcCCcCCCeEEEEEec
Confidence            9987533221           122333333  358999999998643

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.37  E-value=1.7  Score=39.07  Aligned_cols=75  Identities=19%  Similarity=0.179  Sum_probs=49.7

Q ss_pred             eEEEecCCCCChHHHHHHHHHc---------CCCeEEEEcccC-CC-CCCCCceeEEEecCccccccCC----hHHHHHH
Q 017068            6 ILTLSFAPRDSHKAQIQFALER---------GIPAFVAMLGTR-RL-PFPAFSFDIVHCSRCLIPFTAY----NATYLIE   70 (378)
Q Consensus         6 v~~ms~ap~D~se~~vq~A~er---------g~~~~~~v~dae-~L-Pfpd~SFD~V~cs~~l~hw~~~----~~~~L~E   70 (378)
                      |..+.+.     +..++.|++-         ...+.+..+|+. -+ -.+++.||+|+.- +.-.....    ...+++.
T Consensus       107 i~~VEiD-----~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~D-~~dp~~~~~~L~t~eF~~~  180 (290)
T d1xj5a_         107 IDMCEID-----KMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVD-SSDPIGPAKELFEKPFFQS  180 (290)
T ss_dssp             EEEEESC-----HHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEEC-CCCTTSGGGGGGSHHHHHH
T ss_pred             eEEecCC-----HHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEEEc-CCCCCCcchhhCCHHHHHH
Confidence            4555555     5888888773         234567777742 22 2456799999863 33222211    1378999


Q ss_pred             HhhcccCCcEEEEEcC
Q 017068           71 VDRLLRPGGYLVISGP   86 (378)
Q Consensus        71 v~RVLkPGG~lvis~p   86 (378)
                      +.|.|+|||.++....
T Consensus       181 ~~~~L~~~Gi~v~q~~  196 (290)
T d1xj5a_         181 VARALRPGGVVCTQAE  196 (290)
T ss_dssp             HHHHEEEEEEEEEECC
T ss_pred             HHHhcCCCcEEEEecC
Confidence            9999999999999765

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=80.51  E-value=0.35  Score=42.40  Aligned_cols=53  Identities=21%  Similarity=0.237  Sum_probs=34.8

Q ss_pred             EEEEcccCC-C-CCCCCceeEEEecCcccccc---------------CChHHHHHHHhhcccCCcEEEEEcC
Q 017068           32 FVAMLGTRR-L-PFPAFSFDIVHCSRCLIPFT---------------AYNATYLIEVDRLLRPGGYLVISGP   86 (378)
Q Consensus        32 ~~~v~dae~-L-Pfpd~SFD~V~cs~~l~hw~---------------~~~~~~L~Ev~RVLkPGG~lvis~p   86 (378)
                      .+..+|... | -+|++|+|+|+.+=  -++.               +.-...+.|+.|+|||+|.+++...
T Consensus        14 ~l~~GD~le~l~~l~~~sVdli~tDP--PY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~   83 (320)
T d1booa_          14 SMYIGDSLELLESFPEESISLVMTSP--PFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG   83 (320)
T ss_dssp             EEEESCHHHHGGGSCSSCEEEEEECC--CCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEehhHHHHHhhCccCCCCEEEECC--CCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccccc
Confidence            455666421 2 26799999998652  1110               0012579999999999999998765