Citrus Sinensis ID: 017091
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 377 | 2.2.26 [Sep-21-2011] | |||||||
| Q8RY46 | 700 | ABC transporter B family | yes | no | 0.997 | 0.537 | 0.654 | 1e-150 | |
| Q56A55 | 714 | ATP-binding cassette sub- | yes | no | 0.960 | 0.507 | 0.427 | 9e-72 | |
| P43245 | 1277 | Multidrug resistance prot | yes | no | 0.970 | 0.286 | 0.409 | 5e-69 | |
| Q9C7F2 | 1247 | ABC transporter B family | no | no | 0.960 | 0.290 | 0.417 | 6e-69 | |
| P21447 | 1276 | Multidrug resistance prot | yes | no | 0.928 | 0.274 | 0.413 | 9e-69 | |
| P21449 | 1276 | Multidrug resistance prot | yes | no | 0.970 | 0.286 | 0.404 | 1e-68 | |
| Q9NRK6 | 738 | ATP-binding cassette sub- | yes | no | 0.968 | 0.494 | 0.412 | 1e-68 | |
| P06795 | 1276 | Multidrug resistance prot | no | no | 0.970 | 0.286 | 0.406 | 2e-68 | |
| Q54W24 | 767 | ABC transporter B family | yes | no | 0.952 | 0.468 | 0.396 | 2e-68 | |
| P21448 | 1276 | Multidrug resistance prot | no | no | 0.909 | 0.268 | 0.411 | 3e-68 |
| >sp|Q8RY46|AB26B_ARATH ABC transporter B family member 26, chloroplastic OS=Arabidopsis thaliana GN=ABCB26 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 533 bits (1372), Expect = e-150, Method: Compositional matrix adjust.
Identities = 246/376 (65%), Positives = 316/376 (84%)
Query: 1 MMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGM 60
+MRTVRVYGTE++E RY WL++LA I +R+S AYG+WN SF TLY +TQ++AVL+GG+
Sbjct: 324 LMRTVRVYGTEKQEFKRYNHWLQRLADISLRQSAAYGIWNWSFNTLYHATQIIAVLVGGL 383
Query: 61 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 120
SI+ GQ++ EQLTK++LY EWLIYATW + DNLSSL+QS+GA+EKVFQ++DL PS+QF+S
Sbjct: 384 SILAGQITAEQLTKFLLYSEWLIYATWWVGDNLSSLMQSVGASEKVFQMMDLKPSDQFIS 443
Query: 121 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 180
+G +LQRL GH++FV++SF YPSR V ++ +V +++ EVVAIVGLSGSGKST VNLL
Sbjct: 444 KGTRLQRLTGHIEFVDVSFSYPSRDEVAVVQNVNISVHPGEVVAIVGLSGSGKSTLVNLL 503
Query: 181 LRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240
L+LYEP+ GQI +DG PL +LD++WLR++IG+VGQEP+L + DI SNI YGC +++ ED
Sbjct: 504 LQLYEPTSGQILLDGVPLKELDVKWLRQRIGYVGQEPKLFRTDISSNIKYGCDRNISQED 563
Query: 241 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 300
I AAKQAY H+FI +LP GY T+VDDDLLSGGQKQRIAIARAILRDP IL+LDEATSAL
Sbjct: 564 IISAAKQAYAHDFITALPNGYNTIVDDDLLSGGQKQRIAIARAILRDPRILILDEATSAL 623
Query: 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 360
D+ESEH VKGVL ++ ND TKR+VIVIAHRLSTI+A DRIV +D GR++E+G+H ELL
Sbjct: 624 DAESEHNVKGVLRSIGNDSATKRSVIVIAHRLSTIQAADRIVAMDSGRVVEMGSHKELLS 683
Query: 361 KGRLYAKLVKRQTESL 376
K LYA+L KRQ +++
Sbjct: 684 KDGLYARLTKRQNDAV 699
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q56A55|ABCB8_DANRE ATP-binding cassette sub-family B member 8, mitochondrial OS=Danio rerio GN=abcb8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (692), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 162/379 (42%), Positives = 224/379 (59%), Gaps = 17/379 (4%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL---WNMSFITLYRSTQVMAVLLG 58
+RTVR + E++EL Y ++K A + E++ G+ +S I L + V+ +
Sbjct: 339 VRTVRAFAMEDRELEMYAAEVQKSA--AMNETLGTGIAVFQGLSNIVL--NCIVLGTIFA 394
Query: 59 GMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 117
G S+M +SP L +++ + + + + +++ + A +VF+ + L PS
Sbjct: 395 GGSLMARDDLSPGDLMSFLVASQTVQRSLASISILFGQMVRGMSAGARVFEYLALDPSVP 454
Query: 118 FLSEG-VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF 176
G + L LMG V F+NISF YP+RP IL H LT+ + VAIVG SG GKST
Sbjct: 455 LTGGGRIPLDSLMGRVDFMNISFSYPTRPGNQILKHFSLTLPPCKTVAIVGESGGGKSTV 514
Query: 177 VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK-IGFVGQEPQLLQMDIKSNIMYGCPKD 235
LL R Y+PS G + +DG + LD WLR IGF+ QEP L + NI +G P
Sbjct: 515 AALLERFYDPSSGVVMLDGLDIRTLDPSWLRGHVIGFISQEPVLFGTSVMENIRFGKPSA 574
Query: 236 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLL 293
E + AAKQA H FI GY T+V + LSGGQKQRIAIARA++++P+IL+L
Sbjct: 575 TDAEVVS-AAKQANAHNFITGFADGYNTVVGERGVTLSGGQKQRIAIARALVKNPSILIL 633
Query: 294 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 353
DEATSALD+ESE V+ L + T RTV++IAHRLSTI+A D I V+ +GRI+E G
Sbjct: 634 DEATSALDAESERVVQEAL----DRATTGRTVLIIAHRLSTIQAADLICVMSNGRIVEAG 689
Query: 354 NHAELLHKGRLYAKLVKRQ 372
H ELL KG LYA+L+KRQ
Sbjct: 690 THLELLSKGGLYAELIKRQ 708
|
Danio rerio (taxid: 7955) |
| >sp|P43245|MDR1_RAT Multidrug resistance protein 1 OS=Rattus norvegicus GN=Abcb1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 261 bits (668), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 154/376 (40%), Positives = 231/376 (61%), Gaps = 10/376 (2%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW-NMSFITLYRSTQVMAVLLGGM 60
+RTV +G ++KEL RY LE+ + I++++ + ++++ +Y S +A G
Sbjct: 260 IRTVIAFGGQKKELERYNKNLEEAKRVGIKKAITANISIGIAYLLVYAS-YALAFWYGTS 318
Query: 61 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-NQFL 119
++ + S Q+ ++ + N+ + + GA ++F++ID PS + F
Sbjct: 319 LVLSNEYSIGQVLTVFFSILLGTFSIGHLAPNIEAFANARGAAYEIFKIIDNEPSIDSFS 378
Query: 120 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 179
++G K +MG+++F N+ F+YPSR V IL + L +++ + VA+VG SG GKST V L
Sbjct: 379 TKGHKPDSIMGNLEFKNVYFNYPSRSEVKILKGLNLKVKSGQTVALVGNSGCGKSTTVQL 438
Query: 180 LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 239
L RLY+P +G++ IDG + +++R+LRE IG V QEP L I NI YG ++V +
Sbjct: 439 LQRLYDPIEGEVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG-RENVTMD 497
Query: 240 DIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEAT 297
+IE A K+A ++FI+ LP ++TLV + LSGGQKQRIAIARA++R+P ILLLDEAT
Sbjct: 498 EIEKAVKEANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 557
Query: 298 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 357
SALD+ESE V+ L R RT IVIAHRLST++ D I D G I+E GNH E
Sbjct: 558 SALDTESEAVVQAALDKAREG----RTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHEE 613
Query: 358 LLHKGRLYAKLVKRQT 373
L+ + +Y KLV QT
Sbjct: 614 LMKEKGIYFKLVMTQT 629
|
Energy-dependent efflux pump responsible for decreased drug accumulation in multidrug-resistant cells. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9C7F2|AB14B_ARATH ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 261 bits (667), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 158/378 (41%), Positives = 232/378 (61%), Gaps = 16/378 (4%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW-NMSFITLYRSTQVMAVLLGGM 60
+RTV + EEK + Y L+K + R +A GL +++ L+ + A+L
Sbjct: 241 VRTVYAFVGEEKAVKSYSNSLKKALKLSKRSGLAKGLGVGLTYSLLFCA---WALLFWYA 297
Query: 61 SIMI--GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLI--DLLPSN 116
S+++ G+ + + +L + +A + V +LS++ + A +F++I + L S+
Sbjct: 298 SLLVRHGKTNGAKAFTTILNVIYSGFALGQAVPSLSAISKGRVAAANIFKMIGNNNLESS 357
Query: 117 QFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF 176
+ L G LQ ++G ++F +SF YPSRP + + ++ TI + + A VG SGSGKST
Sbjct: 358 ERLENGTTLQNVVGKIEFCGVSFAYPSRPNM-VFENLSFTIHSGKTFAFVGPSGSGKSTI 416
Query: 177 VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 236
++++ R YEP G+I +DG + +L ++WLRE++G V QEP L I SNI+ G K
Sbjct: 417 ISMVQRFYEPRSGEILLDGNDIKNLKLKWLREQMGLVSQEPALFATTIASNILLGKEKAN 476
Query: 237 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLD 294
++ IE AAK A FI SLP GY T V + LSGGQKQRIAIARA+LR+P ILLLD
Sbjct: 477 MDQIIE-AAKAANADSFIKSLPNGYNTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLD 535
Query: 295 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 354
EATSALD+ESE V+ L ++ KRT IVIAHRLSTI+ VD+IVV+ DG++ E G+
Sbjct: 536 EATSALDAESEKIVQQAL----DNVMEKRTTIVIAHRLSTIRNVDKIVVLRDGQVRETGS 591
Query: 355 HAELLHKGRLYAKLVKRQ 372
H+EL+ +G YA LV Q
Sbjct: 592 HSELISRGGDYATLVNCQ 609
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P21447|MDR1A_MOUSE Multidrug resistance protein 1A OS=Mus musculus GN=Abcb1a PE=1 SV=3 | Back alignment and function description |
|---|
Score = 260 bits (665), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 162/392 (41%), Positives = 222/392 (56%), Gaps = 42/392 (10%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKL-----------------AFIRIRESMAYGLWNMSFI 44
+RTV +G ++KEL RY LE+ AF+ I S A W + +
Sbjct: 257 IRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSL 316
Query: 45 TLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATE 104
+ + + VL S++IG S Q + N+ + + GA
Sbjct: 317 VISKEYSIGQVLTVFFSVLIGAFSVGQASP-----------------NIEAFANARGAAY 359
Query: 105 KVFQLIDLLPS-NQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVV 163
+VF++ID PS + F G K + G+++F NI F YPSR V IL + L +++ + V
Sbjct: 360 EVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTV 419
Query: 164 AIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD 223
A+VG SG GKST V L+ RLY+P DG + IDG + +++R+LRE IG V QEP L
Sbjct: 420 ALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATT 479
Query: 224 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIA 281
I NI YG +DV ++IE A K+A ++FI+ LP ++TLV + LSGGQKQRIAIA
Sbjct: 480 IAENIRYG-REDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIA 538
Query: 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 341
RA++R+P ILLLDEATSALD+ESE V+ L R RT IVIAHRLST++ D I
Sbjct: 539 RALVRNPKILLLDEATSALDTESEAVVQAALDKAREG----RTTIVIAHRLSTVRNADVI 594
Query: 342 VVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373
D G I+E GNH EL+ + +Y KLV QT
Sbjct: 595 AGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626
|
Energy-dependent efflux pump responsible for decreased drug accumulation in multidrug-resistant cells. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|P21449|MDR2_CRIGR Multidrug resistance protein 2 OS=Cricetulus griseus GN=PGY2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 260 bits (665), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 152/376 (40%), Positives = 229/376 (60%), Gaps = 10/376 (2%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW-NMSFITLYRSTQVMAVLLGGM 60
+RTV +G + KEL RY LE+ + I++++ + ++++ +Y S +A G
Sbjct: 260 IRTVIAFGGQNKELERYNKNLEEAKNVGIKKAVTANISIGIAYLLVYAS-YALAFWYGTS 318
Query: 61 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-NQFL 119
++ + S Q+ + ++ + N+ + GA ++F++ID PS + F
Sbjct: 319 LVLSNEYSVGQVLTVFFSILFGTFSIGHIAPNIEVFANARGAAYEIFKIIDNEPSIDSFS 378
Query: 120 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 179
++G K +MG+++F N+ F YPSR + IL + L +++ + VA+VG SG GKST V L
Sbjct: 379 TQGHKPDSVMGNLEFKNVHFSYPSRSGIKILKGLNLKVQSGQTVALVGKSGCGKSTTVQL 438
Query: 180 LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 239
L RLY+P++G + IDG + +++R+LRE IG V QEP L I NI YG ++V +
Sbjct: 439 LQRLYDPTEGVVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG-RENVTMD 497
Query: 240 DIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEAT 297
+IE A K+A ++FI+ LP ++TLV + LSGGQKQRIAIARA++R+P ILLLDEAT
Sbjct: 498 EIEKAVKEANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 557
Query: 298 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 357
SALD+ESE V+ L R RT IVIAHRLST++ D I D G I+E GNH E
Sbjct: 558 SALDTESEAVVQAALDKAREG----RTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHEE 613
Query: 358 LLHKGRLYAKLVKRQT 373
L+ + +Y +LV QT
Sbjct: 614 LMKEKGIYCRLVMMQT 629
|
Energy-dependent efflux pump responsible for decreased drug accumulation in multidrug-resistant cells. Cricetulus griseus (taxid: 10029) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9NRK6|ABCBA_HUMAN ATP-binding cassette sub-family B member 10, mitochondrial OS=Homo sapiens GN=ABCB10 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 260 bits (664), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 157/381 (41%), Positives = 233/381 (61%), Gaps = 16/381 (4%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMA-YGLWNMSFITLYRSTQVMAVLL-GG 59
+RTVR +G E E+ +Y ++ + + +E+ A G + + L + V++VL GG
Sbjct: 361 VRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGAT--GLSGNLIVLSVLYKGG 418
Query: 60 MSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 119
+ + ++ +L+ +++Y W+ + + S L++ +GA ++++L++ P F
Sbjct: 419 LLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPF- 477
Query: 120 SEGVKL--QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV 177
+EGV L + G ++F N+ F YP+RP VPI L+I + V A+VG SGSGKST +
Sbjct: 478 NEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVL 537
Query: 178 NLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC--PKD 235
+LLLRLY+P+ G I +DG + L+ WLR KIG V QEP L I NI YG P
Sbjct: 538 SLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSS 597
Query: 236 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLL 293
V E+I+ A+ A FI + P G+ T+V + LLSGGQKQRIAIARA+L++P ILLL
Sbjct: 598 VTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLL 657
Query: 294 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 353
DEATSALD+E+E+ V+ L L + RTV+VIAHRLSTIK + + V+D G+I E G
Sbjct: 658 DEATSALDAENEYLVQEALDRLMDG----RTVLVIAHRLSTIKNANMVAVLDQGKITEYG 713
Query: 354 NHAELLHKGR-LYAKLVKRQT 373
H ELL K +Y KL+ +Q+
Sbjct: 714 KHEELLSKPNGIYRKLMNKQS 734
|
May mediate critical mitochondrial transport functions related to heme biosynthesis. Homo sapiens (taxid: 9606) |
| >sp|P06795|MDR1B_MOUSE Multidrug resistance protein 1B OS=Mus musculus GN=Abcb1b PE=1 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (663), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 153/376 (40%), Positives = 230/376 (61%), Gaps = 10/376 (2%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW-NMSFITLYRSTQVMAVLLGGM 60
+RTV +G ++KEL RY LE+ + I++++ + ++++ +Y S +A G
Sbjct: 260 IRTVIAFGGQQKELERYNKNLEEAKNVGIKKAITASISIGIAYLLVYAS-YALAFWYGTS 318
Query: 61 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-NQFL 119
++ + S ++ ++ + N+ + + GA ++F++ID PS + F
Sbjct: 319 LVLSNEYSIGEVLTVFFSILLGTFSIGHLAPNIEAFANARGAAFEIFKIIDNEPSIDSFS 378
Query: 120 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 179
++G K +MG+++F N+ F+YPSR V IL + L +++ + VA+VG SG GKST V L
Sbjct: 379 TKGYKPDSIMGNLEFKNVHFNYPSRSEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQL 438
Query: 180 LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 239
+ RLY+P +G + IDG + +++R+LRE IG V QEP L I NI YG +DV +
Sbjct: 439 MQRLYDPLEGVVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG-REDVTMD 497
Query: 240 DIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEAT 297
+IE A K+A ++FI+ LP ++TLV + LSGGQKQRIAIARA++R+P ILLLDEAT
Sbjct: 498 EIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 557
Query: 298 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 357
SALD+ESE V+ L R RT IVIAHRLST++ D I D G I+E GNH E
Sbjct: 558 SALDTESEAVVQAALDKAREG----RTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDE 613
Query: 358 LLHKGRLYAKLVKRQT 373
L+ + +Y KLV QT
Sbjct: 614 LMREKGIYFKLVMTQT 629
|
Energy-dependent efflux pump responsible for decreased drug accumulation in multidrug-resistant cells. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q54W24|ABCB4_DICDI ABC transporter B family member 4 OS=Dictyostelium discoideum GN=abcB4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (662), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 148/373 (39%), Positives = 222/373 (59%), Gaps = 14/373 (3%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMS 61
+RTV+ + + E R+ + + + G++ S ++ GG
Sbjct: 395 IRTVQAFSNQHYESERFIEKNQHSLALSTESGVQIGIFQGVTSLALNSVSLLVYWYGGTL 454
Query: 62 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP---SNQF 118
+ G+++ QLT ++++ + + ++ + ++ ++G +++ +LI+ +P SNQ
Sbjct: 455 VSRGEMTGGQLTSFIIHTMNMQSSFSQLSILFTQIMSAMGGMQRITELINRVPLINSNQ- 513
Query: 119 LSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN 178
G KL+ L G ++F+N+ F YP+RP V +LN + LT++ +VVA+ G SG GKST
Sbjct: 514 ---GFKLRELKGEIKFINVDFKYPTRPHVHVLNGLNLTLKPGQVVALAGSSGGGKSTIAG 570
Query: 179 LLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN 238
LL R Y+ S+G I IDG+ + L+ +WLR +IG V QEP L I N+ YG P ++
Sbjct: 571 LLERFYDISNGDITIDGYSIKQLNAKWLRSRIGIVSQEPSLFATTILENLRYGNPNATED 630
Query: 239 EDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEA 296
E IE AAK A H+FI + P GYET+V + LSGGQKQRIAIARAIL++P I++LDEA
Sbjct: 631 EIIE-AAKLANAHQFISNFPKGYETIVGERGVQLSGGQKQRIAIARAILKNPQIIILDEA 689
Query: 297 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHA 356
TSALDS+SE V+ L L RT +VIAHRLST++ D I V+ G+I E GNH
Sbjct: 690 TSALDSQSELLVQTALDNLMKG----RTTLVIAHRLSTVQNADLIGVLSHGKIAEFGNHN 745
Query: 357 ELLHKGRLYAKLV 369
EL++ LY KLV
Sbjct: 746 ELMNHKGLYYKLV 758
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P21448|MDR1_CRIGR Multidrug resistance protein 1 OS=Cricetulus griseus GN=ABCB1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 259 bits (661), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 164/399 (41%), Positives = 223/399 (55%), Gaps = 56/399 (14%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKL-----------------AFIRIRESMAYGLWNMSFI 44
+RTV +G ++KEL RY LE+ AF+ I S A W + +
Sbjct: 258 IRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSL 317
Query: 45 TLYRS-------TQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLL 97
+ + T AVL+G SI GQ SP N+ +
Sbjct: 318 VISKEYSIGQVLTVFFAVLIGAFSI--GQASP----------------------NIEAFA 353
Query: 98 QSIGATEKVFQLIDLLPS-NQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLT 156
+ GA ++F +ID PS + F G K + G+++F NI F YPSR V IL + L
Sbjct: 354 NARGAAYEIFNIIDNKPSIDSFSKNGYKPDNIKGNLEFKNIHFSYPSRKDVQILKGLNLK 413
Query: 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 216
+++ + VA+VG SG GKST V LL RLY+P++G + IDG + +++R+LRE IG V QE
Sbjct: 414 VQSGQTVALVGNSGCGKSTTVQLLQRLYDPTEGVVSIDGQDIRTINVRYLREIIGVVSQE 473
Query: 217 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 274
P L I NI YG ++V ++IE A K+A ++FI+ LP ++TLV + LSGGQ
Sbjct: 474 PVLFATTIAENIRYG-RENVTMDEIEKAVKEANAYDFIMKLPHKFDTLVGERGAQLSGGQ 532
Query: 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 334
KQRIAIARA++R+P ILLLDEATSALD+ESE V+ L R RT IVIAHRLST
Sbjct: 533 KQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREG----RTTIVIAHRLST 588
Query: 335 IKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373
++ D I D G I+E GNH EL+ + +Y KLV QT
Sbjct: 589 VRNADIIAGFDGGVIVEQGNHEELMREKGIYFKLVMTQT 627
|
Energy-dependent efflux pump responsible for decreased drug accumulation in multidrug-resistant cells. Cricetulus griseus (taxid: 10029) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 377 | ||||||
| 225452338 | 658 | PREDICTED: ABC transporter B family memb | 1.0 | 0.572 | 0.734 | 1e-165 | |
| 296080955 | 587 | unnamed protein product [Vitis vinifera] | 1.0 | 0.642 | 0.713 | 1e-164 | |
| 225470565 | 705 | PREDICTED: ABC transporter B family memb | 1.0 | 0.534 | 0.713 | 1e-163 | |
| 255560910 | 682 | abc transporter, putative [Ricinus commu | 1.0 | 0.552 | 0.732 | 1e-161 | |
| 255574019 | 684 | abc transporter, putative [Ricinus commu | 0.981 | 0.540 | 0.692 | 1e-156 | |
| 449435410 | 701 | PREDICTED: ABC transporter B family memb | 1.0 | 0.537 | 0.681 | 1e-154 | |
| 357485675 | 712 | ABC transporter B family member [Medicag | 0.997 | 0.528 | 0.671 | 1e-154 | |
| 357485677 | 537 | ABC transporter B family member [Medicag | 0.997 | 0.700 | 0.671 | 1e-154 | |
| 356501630 | 701 | PREDICTED: ABC transporter B family memb | 0.997 | 0.536 | 0.689 | 1e-153 | |
| 449529913 | 481 | PREDICTED: ABC transporter B family memb | 0.976 | 0.765 | 0.7 | 1e-151 |
| >gi|225452338|ref|XP_002272855.1| PREDICTED: ABC transporter B family member 26, chloroplastic [Vitis vinifera] gi|296087608|emb|CBI34864.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 277/377 (73%), Positives = 323/377 (85%)
Query: 1 MMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGM 60
+MRTVR YGTEE EL RYK WL+KLAF+ IRES+AYG W +SF TLYRSTQV+AVLLGGM
Sbjct: 282 LMRTVRTYGTEENELRRYKQWLDKLAFVSIRESVAYGFWGLSFNTLYRSTQVIAVLLGGM 341
Query: 61 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 120
SI+ G V+PEQLTKY+LYCEWLIY T R+ DN +SLLQS+GA+ KVFQL+DLLPS+QF S
Sbjct: 342 SILTGHVTPEQLTKYILYCEWLIYGTLRLGDNFASLLQSVGASGKVFQLMDLLPSDQFKS 401
Query: 121 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 180
EGVKL+RLMGH++F N+SF+YPSR VP+L HV ++++ANEVVAIVG+SGSGKS+ VNLL
Sbjct: 402 EGVKLKRLMGHIEFANVSFYYPSRVMVPVLEHVNISVQANEVVAIVGISGSGKSSLVNLL 461
Query: 181 LRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240
LRLYEP+ GQI IDGFPL +LDI WLR KIGFVGQEP L MD+KSNI YGC +D+ ED
Sbjct: 462 LRLYEPTTGQILIDGFPLRELDIGWLRGKIGFVGQEPHLFHMDVKSNIRYGCSRDIGQED 521
Query: 241 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 300
IEWAAK AY H FI SLP GY+T++DD LLSGGQKQRIAIARAILR PAIL+LDEATSAL
Sbjct: 522 IEWAAKLAYAHGFISSLPDGYDTIIDDHLLSGGQKQRIAIARAILRGPAILILDEATSAL 581
Query: 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 360
D+ESEHYV+GVLHA RND KRTVIVIAHRLST+KA DRIVV+D G +IEVG+H +LL
Sbjct: 582 DAESEHYVEGVLHAFRNDANAKRTVIVIAHRLSTVKAADRIVVMDGGSVIEVGDHQQLLL 641
Query: 361 KGRLYAKLVKRQTESLT 377
K LYAKL+K QT++L
Sbjct: 642 KDGLYAKLIKTQTDALA 658
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296080955|emb|CBI18648.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust.
Identities = 269/377 (71%), Positives = 333/377 (88%)
Query: 1 MMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGM 60
+MRTVRVYGTEE+E+GRYK WL K+A I +R+S AYGLWN+SF TLY STQV+AVL+GGM
Sbjct: 211 LMRTVRVYGTEEQEVGRYKQWLGKIADISLRQSAAYGLWNLSFNTLYHSTQVIAVLIGGM 270
Query: 61 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 120
SI+ G ++ EQLTK++LY EWLIY+TW + DNLSSL+QS+GA+EKVFQL+DLLPS+QF+S
Sbjct: 271 SILAGHITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLLPSDQFIS 330
Query: 121 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 180
+G+KLQRL+GH++FVN+SF+Y SR VP+L HV +++ NEV+AIVGLSGSGKST VNLL
Sbjct: 331 KGLKLQRLLGHIEFVNVSFYYASRAMVPVLQHVNISVHPNEVLAIVGLSGSGKSTIVNLL 390
Query: 181 LRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240
LRLYEP+DGQ+ IDGFPL +LD++WLRE+IGFVGQEP+L +MDI SNI YGC +D+K +D
Sbjct: 391 LRLYEPTDGQVLIDGFPLQELDVKWLRERIGFVGQEPRLFRMDISSNIRYGCTRDIKQKD 450
Query: 241 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 300
+EWAAKQAY H+FILSLP GY+TLVD+DLLSGGQKQRIAIARA+LRDP IL+LDEATSAL
Sbjct: 451 VEWAAKQAYAHDFILSLPNGYKTLVDNDLLSGGQKQRIAIARALLRDPTILVLDEATSAL 510
Query: 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 360
D+ESEH VK VL ALR+D KTKRTVIVIAHRLSTI+A DRIVV+D GRI+E+G+H ELL
Sbjct: 511 DAESEHNVKNVLRALRSDLKTKRTVIVIAHRLSTIQAADRIVVMDGGRIVEMGSHMELLL 570
Query: 361 KGRLYAKLVKRQTESLT 377
K +YA+L +RQ +++
Sbjct: 571 KDGIYARLTRRQADAVA 587
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470565|ref|XP_002272060.1| PREDICTED: ABC transporter B family member 26, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust.
Identities = 269/377 (71%), Positives = 333/377 (88%)
Query: 1 MMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGM 60
+MRTVRVYGTEE+E+GRYK WL K+A I +R+S AYGLWN+SF TLY STQV+AVL+GGM
Sbjct: 329 LMRTVRVYGTEEQEVGRYKQWLGKIADISLRQSAAYGLWNLSFNTLYHSTQVIAVLIGGM 388
Query: 61 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 120
SI+ G ++ EQLTK++LY EWLIY+TW + DNLSSL+QS+GA+EKVFQL+DLLPS+QF+S
Sbjct: 389 SILAGHITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLLPSDQFIS 448
Query: 121 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 180
+G+KLQRL+GH++FVN+SF+Y SR VP+L HV +++ NEV+AIVGLSGSGKST VNLL
Sbjct: 449 KGLKLQRLLGHIEFVNVSFYYASRAMVPVLQHVNISVHPNEVLAIVGLSGSGKSTIVNLL 508
Query: 181 LRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240
LRLYEP+DGQ+ IDGFPL +LD++WLRE+IGFVGQEP+L +MDI SNI YGC +D+K +D
Sbjct: 509 LRLYEPTDGQVLIDGFPLQELDVKWLRERIGFVGQEPRLFRMDISSNIRYGCTRDIKQKD 568
Query: 241 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 300
+EWAAKQAY H+FILSLP GY+TLVD+DLLSGGQKQRIAIARA+LRDP IL+LDEATSAL
Sbjct: 569 VEWAAKQAYAHDFILSLPNGYKTLVDNDLLSGGQKQRIAIARALLRDPTILVLDEATSAL 628
Query: 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 360
D+ESEH VK VL ALR+D KTKRTVIVIAHRLSTI+A DRIVV+D GRI+E+G+H ELL
Sbjct: 629 DAESEHNVKNVLRALRSDLKTKRTVIVIAHRLSTIQAADRIVVMDGGRIVEMGSHMELLL 688
Query: 361 KGRLYAKLVKRQTESLT 377
K +YA+L +RQ +++
Sbjct: 689 KDGIYARLTRRQADAVA 705
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255560910|ref|XP_002521468.1| abc transporter, putative [Ricinus communis] gi|223539367|gb|EEF40958.1| abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust.
Identities = 276/377 (73%), Positives = 321/377 (85%)
Query: 1 MMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGM 60
++RTVRVYGTE KE RYK WL+KLAFI RES AYGLW M F LYR+TQV AVLLGGM
Sbjct: 306 LIRTVRVYGTERKEFRRYKHWLQKLAFISYRESAAYGLWTMIFHGLYRATQVFAVLLGGM 365
Query: 61 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 120
S+M G VS EQLTKY+LYCEWLIYATWR+VDN+SSLLQ+IGA+EKVFQL+ L PS+QFLS
Sbjct: 366 SVMSGHVSTEQLTKYILYCEWLIYATWRVVDNISSLLQAIGASEKVFQLMQLSPSSQFLS 425
Query: 121 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 180
+G KL RLMG V FV+++FHYPSRPTVPIL H+ L +EANEVVA+VGLSGSGK+T VNLL
Sbjct: 426 KGEKLPRLMGQVHFVDVTFHYPSRPTVPILEHIHLLLEANEVVALVGLSGSGKTTLVNLL 485
Query: 181 LRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240
LRLYEPS+GQIYIDGFPL +LD+R L+E IG+V QEPQL + DIKSNI YGC +DVK ED
Sbjct: 486 LRLYEPSNGQIYIDGFPLRELDMRCLKENIGYVEQEPQLFRTDIKSNITYGCYRDVKMED 545
Query: 241 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 300
IE+AAK A HEFI SLP GYETLVD++LLSGGQKQRIA ARAILR+PAIL+LDEATSAL
Sbjct: 546 IEYAAKLADAHEFISSLPFGYETLVDNELLSGGQKQRIAFARAILRNPAILILDEATSAL 605
Query: 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 360
DSESEHY+KG+L+A + D KTKRTVIVI HRLSTIK DRI+V+D GR++EVGNH +L
Sbjct: 606 DSESEHYIKGILYAFKTDEKTKRTVIVITHRLSTIKTADRIIVMDGGRVVEVGNHVKLQL 665
Query: 361 KGRLYAKLVKRQTESLT 377
+ LY++L+K Q LT
Sbjct: 666 QDGLYSQLIKLQEGVLT 682
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574019|ref|XP_002527927.1| abc transporter, putative [Ricinus communis] gi|223532702|gb|EEF34484.1| abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 261/377 (69%), Positives = 320/377 (84%), Gaps = 7/377 (1%)
Query: 1 MMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGM 60
+MRTVR+YGTE+ E+ RYK+WLEKLA I +R+S AYG WN+SF TLY STQV+AVL+GGM
Sbjct: 315 LMRTVRIYGTEKLEVERYKLWLEKLADISLRQSAAYGFWNLSFNTLYHSTQVIAVLVGGM 374
Query: 61 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 120
SI+ G ++ EQLTK++LY EWLIY+TW + DNLSSL+QS+GA+EKVFQL+DLLP
Sbjct: 375 SILAGHITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLLPR----- 429
Query: 121 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 180
+KLQRLMGH++F NISFHYPSR VP+L HV + + EV+AIVGLSGSGKST VNLL
Sbjct: 430 --LKLQRLMGHIEFANISFHYPSRANVPVLQHVNIVVHPGEVIAIVGLSGSGKSTLVNLL 487
Query: 181 LRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240
LRLYEP++GQI IDGFPL +LDI+WLRE+IG+VGQEP+L +MDI SNI YGC +DV +D
Sbjct: 488 LRLYEPTNGQILIDGFPLGELDIKWLRERIGYVGQEPKLFRMDISSNIRYGCTRDVNQKD 547
Query: 241 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 300
+EWAAKQAY H+FI +LP GYETLVDDDLLSGGQKQRIAIARAILRDP IL+LDEATSAL
Sbjct: 548 VEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSAL 607
Query: 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 360
D+ESEH +KGVL A+R+D T+RTVIVIAHRLSTI+A DRIVV+ G+I+E+G+H ELLH
Sbjct: 608 DAESEHNIKGVLRAVRSDLTTRRTVIVIAHRLSTIQAADRIVVMSGGQIVEMGSHRELLH 667
Query: 361 KGRLYAKLVKRQTESLT 377
+ LYA+L +RQ +++
Sbjct: 668 QDGLYARLTRRQADAVA 684
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435410|ref|XP_004135488.1| PREDICTED: ABC transporter B family member 26, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 257/377 (68%), Positives = 321/377 (85%)
Query: 1 MMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGM 60
++RTVRVYGTE++ELGRY +WLE+LA + +R+S YGLWN SF LY +TQV+AVLLGG
Sbjct: 325 LIRTVRVYGTEKEELGRYGMWLERLADVSLRQSAGYGLWNFSFNFLYHTTQVIAVLLGGT 384
Query: 61 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 120
I+ G ++ EQLTK++LY EWLIY+TW + DNLSSL+QS+GA+EKVFQL+DLLPS+QF+S
Sbjct: 385 FILSGHITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLLPSDQFVS 444
Query: 121 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 180
+G KLQ+L GH++F+++SF Y SRPTV +L V L++ NEVVAIVGLSGSGKST VNLL
Sbjct: 445 QGTKLQKLSGHIEFLDVSFSYSSRPTVSVLQRVSLSVHPNEVVAIVGLSGSGKSTLVNLL 504
Query: 181 LRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240
LRLYEP++GQI IDG+PL +LDI W REKIG+VGQEP+L +MD+ SNI YGC +DV ED
Sbjct: 505 LRLYEPTNGQILIDGYPLKELDIVWWREKIGYVGQEPKLFRMDVSSNIKYGCSRDVGQED 564
Query: 241 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 300
+EWAAKQA+ H+FI SLP GY+TLVDDDLLSGGQKQRIAIARAILRDP +L+LDEATSAL
Sbjct: 565 VEWAAKQAFAHDFIQSLPNGYQTLVDDDLLSGGQKQRIAIARAILRDPTLLILDEATSAL 624
Query: 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 360
D+ESEH VKGVL A+RND K KRTV++IAHRLSTI+A DRIVV+D G+I+E+G H ELL
Sbjct: 625 DAESEHNVKGVLRAVRNDSKMKRTVLIIAHRLSTIQAADRIVVMDGGQIVEMGTHRELLL 684
Query: 361 KGRLYAKLVKRQTESLT 377
K LYA+L ++Q +++
Sbjct: 685 KDGLYARLTRKQADAVA 701
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357485675|ref|XP_003613125.1| ABC transporter B family member [Medicago truncatula] gi|355514460|gb|AES96083.1| ABC transporter B family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 260/387 (67%), Positives = 318/387 (82%), Gaps = 11/387 (2%)
Query: 1 MMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGM 60
++RTVRVYGTEE+E GRYK WLEKLA I +R+S AYG WN SF TLY STQ++AVL GGM
Sbjct: 325 LIRTVRVYGTEEEEHGRYKWWLEKLADISLRQSAAYGFWNFSFNTLYHSTQIIAVLFGGM 384
Query: 61 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 120
SI+ G ++ E+LTK++LY EWLIY+TW + DN+S+L+QS+GA+EKVF L+DL PSNQF++
Sbjct: 385 SILSGHITAEKLTKFILYSEWLIYSTWWVGDNVSNLMQSVGASEKVFNLMDLSPSNQFIT 444
Query: 121 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 180
EGVKLQ L GH++FVN+SFHYPSRPTV ++ HV + +EVVAIVGLSGSGKST VNLL
Sbjct: 445 EGVKLQSLTGHIEFVNVSFHYPSRPTVHVVQHVNFVVNPSEVVAIVGLSGSGKSTLVNLL 504
Query: 181 LRLYEPSDGQ-----------IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 229
LRLYEP+ GQ I IDG P DLD+ W RE+IG+VGQEP+L +MDI SNI
Sbjct: 505 LRLYEPTSGQVLIPSILDSLPILIDGVPHKDLDVMWWRERIGYVGQEPKLFRMDISSNIR 564
Query: 230 YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289
YGC +DV EDIEWAAKQAY H+FI +LP GYETLVDDDLLSGGQKQRIAIARAILRDP
Sbjct: 565 YGCTRDVNQEDIEWAAKQAYAHDFISALPSGYETLVDDDLLSGGQKQRIAIARAILRDPK 624
Query: 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 349
IL+LDEATSALD+ESEH VKGVL ++R+D T+R+VIVIAHRLSTI+A DRI+V+D G+I
Sbjct: 625 ILILDEATSALDAESEHNVKGVLRSVRSDSSTRRSVIVIAHRLSTIQAADRIIVMDKGQI 684
Query: 350 IEVGNHAELLHKGRLYAKLVKRQTESL 376
+E G+H ELL K LYA+L ++Q +++
Sbjct: 685 VENGSHRELLLKDGLYARLTRKQADTM 711
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357485677|ref|XP_003613126.1| ABC transporter B family member [Medicago truncatula] gi|355514461|gb|AES96084.1| ABC transporter B family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 260/387 (67%), Positives = 318/387 (82%), Gaps = 11/387 (2%)
Query: 1 MMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGM 60
++RTVRVYGTEE+E GRYK WLEKLA I +R+S AYG WN SF TLY STQ++AVL GGM
Sbjct: 150 LIRTVRVYGTEEEEHGRYKWWLEKLADISLRQSAAYGFWNFSFNTLYHSTQIIAVLFGGM 209
Query: 61 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 120
SI+ G ++ E+LTK++LY EWLIY+TW + DN+S+L+QS+GA+EKVF L+DL PSNQF++
Sbjct: 210 SILSGHITAEKLTKFILYSEWLIYSTWWVGDNVSNLMQSVGASEKVFNLMDLSPSNQFIT 269
Query: 121 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 180
EGVKLQ L GH++FVN+SFHYPSRPTV ++ HV + +EVVAIVGLSGSGKST VNLL
Sbjct: 270 EGVKLQSLTGHIEFVNVSFHYPSRPTVHVVQHVNFVVNPSEVVAIVGLSGSGKSTLVNLL 329
Query: 181 LRLYEPSDGQ-----------IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 229
LRLYEP+ GQ I IDG P DLD+ W RE+IG+VGQEP+L +MDI SNI
Sbjct: 330 LRLYEPTSGQVLIPSILDSLPILIDGVPHKDLDVMWWRERIGYVGQEPKLFRMDISSNIR 389
Query: 230 YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289
YGC +DV EDIEWAAKQAY H+FI +LP GYETLVDDDLLSGGQKQRIAIARAILRDP
Sbjct: 390 YGCTRDVNQEDIEWAAKQAYAHDFISALPSGYETLVDDDLLSGGQKQRIAIARAILRDPK 449
Query: 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 349
IL+LDEATSALD+ESEH VKGVL ++R+D T+R+VIVIAHRLSTI+A DRI+V+D G+I
Sbjct: 450 ILILDEATSALDAESEHNVKGVLRSVRSDSSTRRSVIVIAHRLSTIQAADRIIVMDKGQI 509
Query: 350 IEVGNHAELLHKGRLYAKLVKRQTESL 376
+E G+H ELL K LYA+L ++Q +++
Sbjct: 510 VENGSHRELLLKDGLYARLTRKQADTM 536
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501630|ref|XP_003519627.1| PREDICTED: ABC transporter B family member 26, chloroplastic-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/377 (68%), Positives = 315/377 (83%), Gaps = 1/377 (0%)
Query: 1 MMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGM 60
++RTVRVYGTEE+E GRYK WLEKLA I +R+S AYG+WN SF LY STQV+AVL GGM
Sbjct: 326 LVRTVRVYGTEEEEHGRYKWWLEKLADISLRQSAAYGVWNFSFNILYHSTQVIAVLFGGM 385
Query: 61 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 120
SI+ G ++ E+LTK++LY EWLIY+TW + DN+S+L+QS+GA+EKVF L+DLLPS+QF+
Sbjct: 386 SILAGHITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFHLMDLLPSSQFIE 445
Query: 121 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 180
GV LQRL G ++F+N+SFHYPSRPTV ++ HV + EVVAIVGLSGSGKST VNLL
Sbjct: 446 RGVTLQRLTGRIEFLNVSFHYPSRPTVSVVQHVNFVVYPGEVVAIVGLSGSGKSTLVNLL 505
Query: 181 LRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240
LRLYEP++GQI ID PL DLDI W RE++GFVGQEP+L +MDI SNI YGC +DVK ED
Sbjct: 506 LRLYEPTNGQILIDDIPLKDLDIMWWRERVGFVGQEPKLFRMDISSNIRYGCTRDVKQED 565
Query: 241 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 300
IEWAAKQAY H FI +LP GYETLVDDDLLSGGQKQRIAIARA+LRDP IL+LDEATSAL
Sbjct: 566 IEWAAKQAYAHNFISALPNGYETLVDDDLLSGGQKQRIAIARALLRDPKILILDEATSAL 625
Query: 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 360
D+ESEH VKGVL ++R+D T R+VIVIAHRLSTI+A DRIVV+D G IIE+G+H ELL
Sbjct: 626 DAESEHNVKGVLRSVRSDSAT-RSVIVIAHRLSTIQAADRIVVMDGGHIIEMGSHRELLL 684
Query: 361 KGRLYAKLVKRQTESLT 377
K LYA+L ++Q +++
Sbjct: 685 KDGLYARLTRKQADAMA 701
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449529913|ref|XP_004171942.1| PREDICTED: ABC transporter B family member 26, chloroplastic-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 259/370 (70%), Positives = 308/370 (83%), Gaps = 2/370 (0%)
Query: 1 MMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGM 60
+++T+R+YGTE KE+GRYK WL++LAFI RES AYGLWNMSF TLYRSTQV AVLLGG+
Sbjct: 107 LVKTIRIYGTERKEVGRYKQWLDRLAFISTRESAAYGLWNMSFSTLYRSTQVFAVLLGGI 166
Query: 61 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 120
+I+ GQ S EQLTKYVLYCEWLIYATWR+ DNLSSLL SI A+E VFQL+DLLPS QFL
Sbjct: 167 AILSGQTSAEQLTKYVLYCEWLIYATWRITDNLSSLLYSIAASETVFQLMDLLPSEQFLC 226
Query: 121 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 180
+GVKL LMGH+QFVN+SFHY R +L H+ +TI ANEVVA+VG SG GKST VNLL
Sbjct: 227 KGVKLPELMGHIQFVNVSFHYHLRDM--LLEHINITIRANEVVALVGPSGCGKSTLVNLL 284
Query: 181 LRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240
LRLYEP++GQI++DG PL +LDIRWLREKIG+V QEP L MDIKSNI YGCP + ED
Sbjct: 285 LRLYEPTNGQIFVDGIPLWELDIRWLREKIGYVEQEPNLFHMDIKSNIRYGCPMNTTQED 344
Query: 241 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 300
IE AAKQA HEFI S P GY+T+VDD+LLSGG+KQRIAIARAILR+PAIL+LDEATSAL
Sbjct: 345 IELAAKQACAHEFISSFPNGYDTIVDDNLLSGGEKQRIAIARAILRNPAILILDEATSAL 404
Query: 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 360
DSESEH+VK + AL+++ ++T+IVIAHRLST+ A D+I V+D G++IE+GNH ELL
Sbjct: 405 DSESEHFVKDTIFALKDNRGGQKTIIVIAHRLSTVVAADKIFVMDRGQVIEIGNHEELLR 464
Query: 361 KGRLYAKLVK 370
K YA+LVK
Sbjct: 465 KDGYYARLVK 474
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 377 | ||||||
| TAIR|locus:2026790 | 700 | ABCB26 "ATP-binding cassette B | 0.997 | 0.537 | 0.630 | 1.6e-127 | |
| UNIPROTKB|A8JBH0 | 560 | CHLREDRAFT_121501 "Predicted p | 0.976 | 0.657 | 0.413 | 2.4e-67 | |
| WB|WBGene00001812 | 761 | haf-2 [Caenorhabditis elegans | 0.954 | 0.473 | 0.394 | 3.8e-62 | |
| UNIPROTKB|O02086 | 761 | haf-2 "Protein HAF-2" [Caenorh | 0.954 | 0.473 | 0.394 | 3.8e-62 | |
| ZFIN|ZDB-GENE-080204-52 | 1275 | abcb4 "ATP-binding cassette, s | 0.965 | 0.285 | 0.404 | 1.3e-60 | |
| ZFIN|ZDB-GENE-040525-2 | 710 | abcb10 "ATP-binding cassette, | 0.962 | 0.511 | 0.391 | 2.4e-60 | |
| DICTYBASE|DDB_G0279915 | 767 | abcB4 "ABC transporter B famil | 0.965 | 0.474 | 0.382 | 3.9e-60 | |
| MGI|MGI:97568 | 1276 | Abcb1b "ATP-binding cassette, | 0.965 | 0.285 | 0.399 | 6.4e-60 | |
| ZFIN|ZDB-GENE-050410-6 | 714 | abcb8 "ATP-binding cassette, s | 0.960 | 0.507 | 0.406 | 1e-59 | |
| RGD|1311222 | 715 | Abcb10 "ATP-binding cassette, | 0.968 | 0.510 | 0.391 | 1.7e-59 |
| TAIR|locus:2026790 ABCB26 "ATP-binding cassette B26" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1252 (445.8 bits), Expect = 1.6e-127, P = 1.6e-127
Identities = 237/376 (63%), Positives = 303/376 (80%)
Query: 1 MMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGM 60
+MRTVRVYGTE++E RY WL++LA I +R+S AYG+WN SF TLY +TQ++AVL+GG+
Sbjct: 324 LMRTVRVYGTEKQEFKRYNHWLQRLADISLRQSAAYGIWNWSFNTLYHATQIIAVLVGGL 383
Query: 61 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 120
SI+ GQ++ EQLTK++LY EWLIYATW + DNLSSL+QS+GA+EKVFQ++DL PS+QF+S
Sbjct: 384 SILAGQITAEQLTKFLLYSEWLIYATWWVGDNLSSLMQSVGASEKVFQMMDLKPSDQFIS 443
Query: 121 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 180
+G +LQRL GH++FV++SF YPSR V ++ +V +++ EVVAIVGLSGSGKST VNLL
Sbjct: 444 KGTRLQRLTGHIEFVDVSFSYPSRDEVAVVQNVNISVHPGEVVAIVGLSGSGKSTLVNLL 503
Query: 181 LRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240
L+LYEP+ GQI +DG PL +LD++WLR++IG+VGQEP+L + DI SNI YGC +++ ED
Sbjct: 504 LQLYEPTSGQILLDGVPLKELDVKWLRQRIGYVGQEPKLFRTDISSNIKYGCDRNISQED 563
Query: 241 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 300
I AAKQAY H+FI +LP GY T+VDDDLLSGGQKQRIAIARAILRDP IL+LDEATSAL
Sbjct: 564 IISAAKQAYAHDFITALPNGYNTIVDDDLLSGGQKQRIAIARAILRDPRILILDEATSAL 623
Query: 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLH 360
D+ESEH VKGVL ++ ND TKR+VIVIAHRLSTI+A +H ELL
Sbjct: 624 DAESEHNVKGVLRSIGNDSATKRSVIVIAHRLSTIQAADRIVAMDSGRVVEMGSHKELLS 683
Query: 361 KGRLYAKLVKRQTESL 376
K LYA+L KRQ +++
Sbjct: 684 KDGLYARLTKRQNDAV 699
|
|
| UNIPROTKB|A8JBH0 CHLREDRAFT_121501 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)] | Back alignment and assigned GO terms |
|---|
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 155/375 (41%), Positives = 226/375 (60%)
Query: 1 MMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMS-FITLYRSTQVMAVLLGG 59
+ R VR +GTE E RY WL+KL + R++ Y L+ S I Y S +V A+++G
Sbjct: 190 LSRVVRTFGTEGTETKRYTTWLDKLYEVGKRQAAGYSLFVASGHIACYAS-KVAALVVGC 248
Query: 60 MSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 119
++ G+++ EQLT +++Y E++ YA+ + D + + +++GA+E+V ++ P+ Q +
Sbjct: 249 GMVLTGKLTAEQLTNFIMYVEFVTYASLNVCDEFTEICEAVGASERVVAMLGAAPAPQ-I 307
Query: 120 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 179
+ G+ G + ++ F YPSRP LN V L+ E ++ A+VGLSGSGK+T L
Sbjct: 308 AAGIIPATFSGRMSLEDVKFSYPSRPGNMALNGVSLSFEPGKLTALVGLSGSGKTTVCAL 367
Query: 180 LLRLYEPSDGQIYIDG-FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN 238
L RLY+PS G++ +D + D D W R++IG V QEP+L I +NI YG +
Sbjct: 368 LQRLYDPSGGRLVLDADLDVRDTDAAWYRQQIGVVPQEPRLFSRSIAANIAYGMEHAPPS 427
Query: 239 E-DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 297
DIE AA+ A H+FI+SLP GYET V D LLSGGQKQR+A+ARA++R P +L+LDE +
Sbjct: 428 AADIEEAARAANAHDFIMSLPQGYETQVTDKLLSGGQKQRLALARALIRKPKVLVLDEFS 487
Query: 298 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAE 357
SALD+ESE V L R RTVIVIAHRLST++ +H E
Sbjct: 488 SALDAESEAQVHVALD--RAMSARDRTVIVIAHRLSTVRHADCIVVMDKGKVHEMGSHHE 545
Query: 358 LLHKGRLYAKLVKRQ 372
LL + +Y +LV RQ
Sbjct: 546 LLARRGIYWQLVCRQ 560
|
|
| WB|WBGene00001812 haf-2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 149/378 (39%), Positives = 226/378 (59%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL--WNMSFITLYRSTQVMAVLL-G 58
MRTVR + E+KEL R++ L + ++S+AY WN F + ++AVL G
Sbjct: 386 MRTVRSFACEKKELKRFEDRLSSTLSVNRKKSIAYLFYTWNNEFCD---NAILVAVLFYG 442
Query: 59 GMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQF 118
G +M G++ EQL ++LY L + + +S L++++GA+ KVF L++ P QF
Sbjct: 443 GHLVMTGKMEKEQLITFLLYQMQLGENLYYLSYVMSGLMEAVGASRKVFDLMNRKP--QF 500
Query: 119 LSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN 178
+G++ + G++ F ++ F YPSRP P+L + L+I++ E VA+VG SG GKS+ V+
Sbjct: 501 ELDGMQRPFVNGNITFSHVGFTYPSRPNNPVLKDLTLSIKSGETVALVGPSGGGKSSIVS 560
Query: 179 LLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN 238
L+ YEP +G + +DG P+ D++ + +K+ V QEP L ++ NI+YGC D
Sbjct: 561 LIEHFYEPDEGSVTLDGVPIKDINHVYYHQKVALVAQEPVLYNGSVRHNILYGC--DFAT 618
Query: 239 ED-IEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDE 295
ED + A+K A VH+F++ L GY+T + +SGGQKQRIAIARA++R+PA+L+LDE
Sbjct: 619 EDDMLNASKMANVHDFVMELEKGYDTNCGEKGVQMSGGQKQRIAIARALVRNPAVLILDE 678
Query: 296 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNH 355
ATSALD+ESE V+ L + C +RTVI++AHRLSTI+ H
Sbjct: 679 ATSALDTESEALVQQAL----SRCAQERTVIIVAHRLSTIEKANKIAVIVKGCLVQMGTH 734
Query: 356 AELL-HKGRLYAKLVKRQ 372
EL+ +Y LV RQ
Sbjct: 735 TELMTDTDGMYYSLVSRQ 752
|
|
| UNIPROTKB|O02086 haf-2 "Protein HAF-2" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 149/378 (39%), Positives = 226/378 (59%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL--WNMSFITLYRSTQVMAVLL-G 58
MRTVR + E+KEL R++ L + ++S+AY WN F + ++AVL G
Sbjct: 386 MRTVRSFACEKKELKRFEDRLSSTLSVNRKKSIAYLFYTWNNEFCD---NAILVAVLFYG 442
Query: 59 GMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQF 118
G +M G++ EQL ++LY L + + +S L++++GA+ KVF L++ P QF
Sbjct: 443 GHLVMTGKMEKEQLITFLLYQMQLGENLYYLSYVMSGLMEAVGASRKVFDLMNRKP--QF 500
Query: 119 LSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN 178
+G++ + G++ F ++ F YPSRP P+L + L+I++ E VA+VG SG GKS+ V+
Sbjct: 501 ELDGMQRPFVNGNITFSHVGFTYPSRPNNPVLKDLTLSIKSGETVALVGPSGGGKSSIVS 560
Query: 179 LLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN 238
L+ YEP +G + +DG P+ D++ + +K+ V QEP L ++ NI+YGC D
Sbjct: 561 LIEHFYEPDEGSVTLDGVPIKDINHVYYHQKVALVAQEPVLYNGSVRHNILYGC--DFAT 618
Query: 239 ED-IEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDE 295
ED + A+K A VH+F++ L GY+T + +SGGQKQRIAIARA++R+PA+L+LDE
Sbjct: 619 EDDMLNASKMANVHDFVMELEKGYDTNCGEKGVQMSGGQKQRIAIARALVRNPAVLILDE 678
Query: 296 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNH 355
ATSALD+ESE V+ L + C +RTVI++AHRLSTI+ H
Sbjct: 679 ATSALDTESEALVQQAL----SRCAQERTVIIVAHRLSTIEKANKIAVIVKGCLVQMGTH 734
Query: 356 AELL-HKGRLYAKLVKRQ 372
EL+ +Y LV RQ
Sbjct: 735 TELMTDTDGMYYSLVSRQ 752
|
|
| ZFIN|ZDB-GENE-080204-52 abcb4 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 631 (227.2 bits), Expect = 1.3e-60, P = 1.3e-60
Identities = 153/378 (40%), Positives = 216/378 (57%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL-WNMSFITLYRSTQVMAVLLGGM 60
+RTV +G ++KE+ RY LE + +R+++ + +F +Y S +A G
Sbjct: 266 IRTVFAFGGQKKEIKRYHKNLEDAKNVGVRKAITVNIAMGFTFFMIYMS-YALAFWYGST 324
Query: 61 SIMIGQVSPEQLTKYVLYCEWLI--YATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-NQ 117
I+ G+ + L ++ LI + + N+ + + GA KVFQ+ID P N
Sbjct: 325 LILGGEYTIGMLL--TIFFAVLIGAFGLGQTSPNIQTFSSARGAAHKVFQIIDHEPKINS 382
Query: 118 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV 177
F EG KL + G+++F NI F YPSR V +LN + L + + + +A+VG SG GKST +
Sbjct: 383 FSEEGYKLDVVKGNIEFKNIHFRYPSRDDVKVLNGMNLKVMSGQTIALVGSSGCGKSTTI 442
Query: 178 NLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK 237
LL R Y+P +G + IDG + L++R LRE IG V QEP L I NI YG +DV
Sbjct: 443 QLLQRFYDPQEGSVSIDGHDIRSLNVRGLRELIGVVSQEPVLFATTIAENIRYG-RQDVT 501
Query: 238 NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDE 295
++IE AA++A + FI+ LP +ETLV D +SGGQKQRIAIARA++R+P ILLLDE
Sbjct: 502 QDEIEQAAREANAYNFIMKLPDKFETLVGDRGTQMSGGQKQRIAIARALVRNPKILLLDE 561
Query: 296 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNH 355
ATSALD+ESE V+ L +R RT IV+AHRLSTI+ H
Sbjct: 562 ATSALDAESETIVQAALDKVR----LGRTTIVVAHRLSTIRNADVIAGFQNGEIVELGTH 617
Query: 356 AELLHKGRLYAKLVKRQT 373
EL+ + +Y LV QT
Sbjct: 618 DELMERKGIYHSLVNMQT 635
|
|
| ZFIN|ZDB-GENE-040525-2 abcb10 "ATP-binding cassette, sub-family B (MDR/TAP), member 10" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
Identities = 149/381 (39%), Positives = 231/381 (60%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM-AYGLWNMSFITLYRSTQVMAVLLGGM 60
+RTVR +G E E+ +Y ++ + + +E++ + G + ++ ++ + +++VL G
Sbjct: 325 LRTVRAFGKELTEVQKYSQKVDHIFELAKKEAVVSAGFYGVTGLS--GNVIILSVLYKGG 382
Query: 61 SIMIGQ-VSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQF- 118
+M + ++ QL+ +++Y W+ + S L++ +GA ++++LID P +F
Sbjct: 383 LLMASEAMTVGQLSSFLMYAFWVGISIAGFSSFYSELMKGLGAGTRLWELIDRKP--EFP 440
Query: 119 LSEGVKL--QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF 176
L+EG+ L + L G ++F N+SF YP+R PI + L + A V+A+VG SGSGKS+
Sbjct: 441 LNEGLVLTSELLKGELEFRNVSFAYPTRKDSPIFQDLSLHVPAGSVLAVVGSSGSGKSSL 500
Query: 177 VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP--K 234
V+LLLRLY+P G + +DG + DL+ WLR IG V QEP L I NI YG P
Sbjct: 501 VSLLLRLYDPDSGIVSVDGHDIRDLNPYWLRSHIGTVSQEPVLFSCSIAENIAYGAPDPS 560
Query: 235 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILL 292
V EDI AA+ A H+FI P GY+T+V + LLSGGQKQR+AIARA+L++P ILL
Sbjct: 561 QVTVEDIYRAAQIANAHDFIQEFPKGYDTVVGEKGVLLSGGQKQRVAIARALLKNPKILL 620
Query: 293 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXX 352
LDEATSALD+E+E V+ L L + RTV++IAHRLSTI++
Sbjct: 621 LDEATSALDAENEFLVQEALERLMDG----RTVLIIAHRLSTIQSADSVAVLDQHRVMEI 676
Query: 353 XNHAELLHKGR-LYAKLVKRQ 372
+H++LL + L+ KL+++Q
Sbjct: 677 GSHSQLLANDQGLFRKLMEKQ 697
|
|
| DICTYBASE|DDB_G0279915 abcB4 "ABC transporter B family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 143/374 (38%), Positives = 217/374 (58%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMS 61
+RTV+ + + E R+ + + + G++ S ++ GG
Sbjct: 395 IRTVQAFSNQHYESERFIEKNQHSLALSTESGVQIGIFQGVTSLALNSVSLLVYWYGGTL 454
Query: 62 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 121
+ G+++ QLT ++++ + + ++ + ++ ++G +++ +LI+ +P ++
Sbjct: 455 VSRGEMTGGQLTSFIIHTMNMQSSFSQLSILFTQIMSAMGGMQRITELINRVPLINS-NQ 513
Query: 122 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 181
G KL+ L G ++F+N+ F YP+RP V +LN + LT++ +VVA+ G SG GKST LL
Sbjct: 514 GFKLRELKGEIKFINVDFKYPTRPHVHVLNGLNLTLKPGQVVALAGSSGGGKSTIAGLLE 573
Query: 182 RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241
R Y+ S+G I IDG+ + L+ +WLR +IG V QEP L I N+ YG P ++E I
Sbjct: 574 RFYDISNGDITIDGYSIKQLNAKWLRSRIGIVSQEPSLFATTILENLRYGNPNATEDEII 633
Query: 242 EWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSA 299
E AAK A H+FI + P GYET+V + LSGGQKQRIAIARAIL++P I++LDEATSA
Sbjct: 634 E-AAKLANAHQFISNFPKGYETIVGERGVQLSGGQKQRIAIARAILKNPQIIILDEATSA 692
Query: 300 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELL 359
LDS+SE V+ L L RT +VIAHRLST++ NH EL+
Sbjct: 693 LDSQSELLVQTALDNLMKG----RTTLVIAHRLSTVQNADLIGVLSHGKIAEFGNHNELM 748
Query: 360 -HKGRLYAKLVKRQ 372
HKG LY KLV+RQ
Sbjct: 749 NHKG-LYYKLVQRQ 761
|
|
| MGI|MGI:97568 Abcb1b "ATP-binding cassette, sub-family B (MDR/TAP), member 1B" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 6.4e-60, Sum P(2) = 6.4e-60
Identities = 151/378 (39%), Positives = 226/378 (59%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW-NMSFITLYRSTQVMAVLLGGM 60
+RTV +G ++KEL RY LE+ + I++++ + ++++ +Y S +A G
Sbjct: 260 IRTVIAFGGQQKELERYNKNLEEAKNVGIKKAITASISIGIAYLLVYAS-YALAFWYGTS 318
Query: 61 SIMIGQVS-PEQLTKYVLYCEWL-IYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-NQ 117
++ + S E LT V + L ++ + N+ + + GA ++F++ID PS +
Sbjct: 319 LVLSNEYSIGEVLT--VFFSILLGTFSIGHLAPNIEAFANARGAAFEIFKIIDNEPSIDS 376
Query: 118 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV 177
F ++G K +MG+++F N+ F+YPSR V IL + L +++ + VA+VG SG GKST V
Sbjct: 377 FSTKGYKPDSIMGNLEFKNVHFNYPSRSEVQILKGLNLKVKSGQTVALVGNSGCGKSTTV 436
Query: 178 NLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK 237
L+ RLY+P +G + IDG + +++R+LRE IG V QEP L I NI YG +DV
Sbjct: 437 QLMQRLYDPLEGVVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG-REDVT 495
Query: 238 NEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDE 295
++IE A K+A ++FI+ LP ++TLV + LSGGQKQRIAIARA++R+P ILLLDE
Sbjct: 496 MDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDE 555
Query: 296 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNH 355
ATSALD+ESE V+ L R RT IVIAHRLST++ NH
Sbjct: 556 ATSALDTESEAVVQAALDKAREG----RTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNH 611
Query: 356 AELLHKGRLYAKLVKRQT 373
EL+ + +Y KLV QT
Sbjct: 612 DELMREKGIYFKLVMTQT 629
|
|
| ZFIN|ZDB-GENE-050410-6 abcb8 "ATP-binding cassette, sub-family B (MDR/TAP), member 8" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 154/379 (40%), Positives = 213/379 (56%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL---WNMSFITLYRSTQVMAVLLG 58
+RTVR + E++EL Y ++K A + E++ G+ +S I L + V+ +
Sbjct: 339 VRTVRAFAMEDRELEMYAAEVQKSA--AMNETLGTGIAVFQGLSNIVL--NCIVLGTIFA 394
Query: 59 GMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 117
G S+M +SP L +++ + + + + +++ + A +VF+ + L PS
Sbjct: 395 GGSLMARDDLSPGDLMSFLVASQTVQRSLASISILFGQMVRGMSAGARVFEYLALDPSVP 454
Query: 118 FLSEG-VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF 176
G + L LMG V F+NISF YP+RP IL H LT+ + VAIVG SG GKST
Sbjct: 455 LTGGGRIPLDSLMGRVDFMNISFSYPTRPGNQILKHFSLTLPPCKTVAIVGESGGGKSTV 514
Query: 177 VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR-EKIGFVGQEPQLLQMDIKSNIMYGCPKD 235
LL R Y+PS G + +DG + LD WLR IGF+ QEP L + NI +G P
Sbjct: 515 AALLERFYDPSSGVVMLDGLDIRTLDPSWLRGHVIGFISQEPVLFGTSVMENIRFGKPSA 574
Query: 236 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLL 293
E + AAKQA H FI GY T+V + LSGGQKQRIAIARA++++P+IL+L
Sbjct: 575 TDAEVVS-AAKQANAHNFITGFADGYNTVVGERGVTLSGGQKQRIAIARALVKNPSILIL 633
Query: 294 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXX 353
DEATSALD+ESE V+ L + T RTV++IAHRLSTI+A
Sbjct: 634 DEATSALDAESERVVQEAL----DRATTGRTVLIIAHRLSTIQAADLICVMSNGRIVEAG 689
Query: 354 NHAELLHKGRLYAKLVKRQ 372
H ELL KG LYA+L+KRQ
Sbjct: 690 THLELLSKGGLYAELIKRQ 708
|
|
| RGD|1311222 Abcb10 "ATP-binding cassette, subfamily B (MDR/TAP), member 10" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 149/381 (39%), Positives = 223/381 (58%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY-GLWNMSFITLYRSTQVMAVLL-GG 59
+RT+R +G E E+ +Y +++L + +E++A G + + ++ + V++VL GG
Sbjct: 326 IRTIRAFGKEMTEVEKYTSRVDQLLQLARKEALARAGFFGAAGLS--GNLIVLSVLYKGG 383
Query: 60 MSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 119
+ + ++ +L+ +++Y W+ + + S L++ +GA ++++L++ P F
Sbjct: 384 LLLGSTHMTVGELSSFLMYAFWVGLSIGGLSSFYSQLMKGLGAGGRLWELLERQPRLPF- 442
Query: 120 SEGVKLQR--LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV 177
+EG+ L G ++F N+ F YP+RP V + L+I + V A+VG SGSGKST V
Sbjct: 443 NEGIVLDEKTFQGALEFRNVHFTYPARPEVSVFQDFSLSIPSGSVTALVGPSGSGKSTVV 502
Query: 178 NLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK--D 235
+LLLRLY+PS G + +DG + L+ WLR KIG V QEP L + NI YG
Sbjct: 503 SLLLRLYDPSSGTVSLDGHDIRQLNPVWLRSKIGTVSQEPVLFSCSVAENIAYGADNLSS 562
Query: 236 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLL 293
V +E AA+ A EFI S P G++T+V + LLSGGQKQRIAIARA+L++P ILLL
Sbjct: 563 VTARQVERAAEVANAAEFIRSFPQGFDTVVGEKGVLLSGGQKQRIAIARALLKNPKILLL 622
Query: 294 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXX 353
DEATSALD+E+EH V+ L L RTV++IAHRLSTIK
Sbjct: 623 DEATSALDAENEHLVQEALDRLMEG----RTVLIIAHRLSTIKNANFVAVLNQGKICEHG 678
Query: 354 NHAELLHKGR-LYAKLVKRQT 373
H ELL K LY KL+ +Q+
Sbjct: 679 THEELLLKPNGLYRKLMNKQS 699
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 377 | |||
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-117 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-105 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-103 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-101 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-100 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 6e-92 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-92 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-89 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-87 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-82 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-81 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-80 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 5e-79 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-75 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 7e-75 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 6e-74 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-71 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 4e-67 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 5e-67 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-66 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 5e-64 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 9e-63 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-61 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-57 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-57 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 9e-57 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-55 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-55 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-53 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 9e-52 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-51 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 5e-50 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-50 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 9e-50 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-48 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-47 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-46 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-45 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-45 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 5e-45 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-45 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 9e-45 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-44 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-44 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-44 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-43 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-43 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-43 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 6e-43 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-42 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-41 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 9e-41 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-40 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-40 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-39 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-39 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 5e-39 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 6e-39 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-38 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-38 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 3e-38 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 6e-38 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-38 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-37 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-37 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-37 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 6e-37 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-36 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 6e-36 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 7e-36 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-35 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 4e-35 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-35 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-35 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-35 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 9e-34 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-33 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-33 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-33 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 5e-33 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 5e-33 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 8e-33 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 9e-33 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-32 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-32 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-32 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-32 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-32 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-31 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-31 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-31 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-31 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 6e-31 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 7e-31 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 8e-31 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-30 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-30 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-30 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-30 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-30 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-30 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-30 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 6e-30 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-29 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-29 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-29 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-29 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 6e-29 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-28 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-28 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-28 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-28 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-28 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 7e-28 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 8e-28 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 8e-28 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 9e-28 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-27 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-27 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-27 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-27 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-27 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-27 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 5e-27 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 5e-27 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 5e-27 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-26 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-26 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-26 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-26 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 3e-26 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 4e-26 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 4e-26 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 6e-26 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 6e-26 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 7e-26 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-26 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 8e-26 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-25 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-25 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-25 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 7e-25 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 7e-25 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-24 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-24 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 7e-24 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 7e-24 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 8e-24 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 8e-24 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-23 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-23 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-23 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-23 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 4e-23 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-23 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 4e-23 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-23 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 5e-23 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 7e-23 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 7e-23 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 7e-23 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 9e-23 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-22 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-22 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-22 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 4e-22 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-22 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 5e-22 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 5e-22 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 6e-22 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 9e-22 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-21 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-21 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-21 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-21 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-21 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-21 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-21 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-21 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-21 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 4e-21 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-21 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 6e-21 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 6e-21 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 7e-21 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 7e-21 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 9e-21 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-20 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-20 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-20 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-20 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 3e-20 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-20 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-20 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-20 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-20 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 5e-20 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-20 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-20 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-20 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 6e-20 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 7e-20 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 9e-20 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 9e-20 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 9e-20 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-19 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-19 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-19 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-19 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-19 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 1e-19 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-19 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-19 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-19 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-19 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-19 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-19 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-19 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-19 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-19 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 5e-19 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 6e-19 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 7e-19 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 8e-19 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 8e-19 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-18 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-18 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-18 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-18 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-18 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-18 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-18 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 4e-18 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 4e-18 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 4e-18 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 6e-18 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 6e-18 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 7e-18 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 8e-18 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-17 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-17 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-17 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-17 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-17 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-17 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-17 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-17 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-17 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-17 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-17 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 5e-17 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 7e-17 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-16 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-16 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-16 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-16 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-16 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-16 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-16 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-16 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-16 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-16 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-16 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 6e-16 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 8e-16 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 8e-16 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 9e-16 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 9e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-15 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-15 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 1e-15 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-15 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-15 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-15 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-15 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-15 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-15 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-15 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 6e-15 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-14 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-14 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-14 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-14 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-14 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 5e-14 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-13 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 1e-13 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-13 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-13 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-13 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-13 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 4e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-13 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-13 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 6e-13 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 8e-13 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 8e-13 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-12 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-12 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-12 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 5e-12 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 9e-12 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 9e-12 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 9e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-11 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-11 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-11 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-11 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 5e-11 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 5e-11 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 7e-11 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 9e-11 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-10 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 1e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-10 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-10 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-10 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 4e-10 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-10 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 6e-10 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 7e-10 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 8e-10 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 9e-10 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-09 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-09 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-09 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-09 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 3e-09 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 8e-09 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-08 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 2e-08 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 2e-08 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-08 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-08 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 6e-08 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 6e-08 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 7e-08 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 8e-08 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 8e-08 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 1e-07 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 6e-07 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-06 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-06 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 3e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 6e-06 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 6e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 7e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-05 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 3e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-05 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 7e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 8e-05 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 8e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 9e-05 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 1e-04 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 2e-04 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 2e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 3e-04 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 4e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 4e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 5e-04 | |
| cd03278 | 197 | cd03278, ABC_SMC_barmotin, ATP-binding cassette do | 6e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 7e-04 | |
| PRK00349 | 943 | PRK00349, uvrA, excinuclease ABC subunit A; Review | 0.001 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.002 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 339 bits (872), Expect = e-117
Identities = 135/243 (55%), Positives = 172/243 (70%), Gaps = 7/243 (2%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++F N+SF YPSRP VPIL + LTI + VA+VG SG GKST V+LL R Y+P+ G+I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 251
+DG + DL++RWLR +IG V QEP L I NI YG P D +E++E AAK+A +H
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKP-DATDEEVEEAAKKANIH 119
Query: 252 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309
+FI+SLP GY+TLV + LSGGQKQRIAIARA+LR+P ILLLDEATSALD+ESE V+
Sbjct: 120 DFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQ 179
Query: 310 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 369
L RT IVIAHRLSTI+ D I V+ +G+++E G H EL+ + +YAKLV
Sbjct: 180 EALDRAMKG----RTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235
Query: 370 KRQ 372
K Q
Sbjct: 236 KAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 319 bits (820), Expect = e-105
Identities = 158/375 (42%), Positives = 232/375 (61%), Gaps = 11/375 (2%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMS 61
+R ++ +G E++EL R++ E+L +R S L + L V+ + LGG
Sbjct: 201 IRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFL 260
Query: 62 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 121
++ G ++ L ++LY L+ ++ + +S L ++ A E++F+L+D +
Sbjct: 261 VLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDE--EPEVEDP 318
Query: 122 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 181
L+ +G ++F N+SF YP + P+L + +IE E VAIVG SGSGKST + LLL
Sbjct: 319 PDPLKDTIGSIEFENVSFSYPGKK--PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLL 376
Query: 182 RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241
RLY+P+ G+I IDG + D+ + LR++IG V Q+P L I+ NI G P D +E+I
Sbjct: 377 RLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP-DATDEEI 435
Query: 242 EWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSA 299
E A K A HEFI +LP GY+T+V + LSGGQ+QR+AIARA+LR+P IL+LDEATSA
Sbjct: 436 EEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSA 495
Query: 300 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 359
LD+E+E ++ L L RT ++IAHRLSTIK DRI+V+D+GRI+E G H ELL
Sbjct: 496 LDTETEALIQDALKKLLKG----RTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELL 551
Query: 360 HKGRLYAKLVKRQTE 374
KG LYA+L + Q
Sbjct: 552 AKGGLYARLYQAQGG 566
|
Length = 567 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 320 bits (821), Expect = e-103
Identities = 157/372 (42%), Positives = 227/372 (61%), Gaps = 14/372 (3%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG--LWNMSFITLYRSTQVMAVLLGG 59
MRTVR + EE E R+K LE+ + R+++AY LW S + + QV+ + GG
Sbjct: 350 MRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGML--IQVLVLYYGG 407
Query: 60 MSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 119
++ G+VS L ++LY E L A + S ++Q++GA+EKVF+ +D P+ L
Sbjct: 408 QLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIP-L 466
Query: 120 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 179
+ + L G ++F ++SF YP+RP VP+L + T+ EVVA+VG SGSGKST L
Sbjct: 467 TGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAAL 526
Query: 180 LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 239
L LY+P+ GQ+ +DG PL D +L ++ VGQEP L ++ NI YG D +E
Sbjct: 527 LQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGL-TDTPDE 585
Query: 240 DIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEAT 297
+I AAK A H+FI+ P GY+T V + LSGGQKQRIAIARA++R P +L+LDEAT
Sbjct: 586 EIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEAT 645
Query: 298 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 357
SALD+E E +L R + RTV++IAHRLST++ D+I+V+ G ++E+G H +
Sbjct: 646 SALDAECEQ----LLQESR--SRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQ 699
Query: 358 LLHKGRLYAKLV 369
L+ Y LV
Sbjct: 700 LMEDQGCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 310 bits (796), Expect = e-101
Identities = 152/375 (40%), Positives = 221/375 (58%), Gaps = 10/375 (2%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSF-ITLYRSTQVMAVLLGGM 60
+RTV+ +G E+ E R+ +EK A+ R+ + + I L V + +G
Sbjct: 207 IRTVQAFGHEDAERSRFGGAVEK-AYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAH 265
Query: 61 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 120
++ G++S L ++V Y + + + + L ++ GA E++ +L+ P + +
Sbjct: 266 DVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA 325
Query: 121 EGVKL-QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 179
L L G ++F ++F YP+RP P L+ + LT+ E VA+VG SG+GKST L
Sbjct: 326 HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQL 385
Query: 180 LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 239
LLR Y+P G+I +DG L LD LR ++ V Q+P L + NI YG P D +E
Sbjct: 386 LLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP-DATDE 444
Query: 240 DIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEAT 297
++E AA+ A+ HEFI +LP GY+T + + LSGGQ+QRIAIARAIL+D ILLLDEAT
Sbjct: 445 EVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEAT 504
Query: 298 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 357
SALD+ESE V+ L L RT ++IAHRL+T+ DRIVV+D GRI+ G HAE
Sbjct: 505 SALDAESEQLVQQALETLMKG----RTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAE 560
Query: 358 LLHKGRLYAKLVKRQ 372
L+ KG LYA+L + Q
Sbjct: 561 LIAKGGLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 296 bits (760), Expect = e-100
Identities = 123/239 (51%), Positives = 159/239 (66%), Gaps = 8/239 (3%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
V+F N++F YP P+L + L I A E VA+VG SGSGKST VNL+ R Y+ G+I
Sbjct: 1 VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 251
IDG + D + LR +IG V Q+ L + NI YG P E++E AA+ A H
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAH 118
Query: 252 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309
EFI+ LP GY+T++ + LSGGQ+QRIAIARA+L+DP IL+LDEATSALD+ESE V+
Sbjct: 119 EFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQ 178
Query: 310 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 368
L L + RT VIAHRLSTI+ DRIVV++DG+I+E G H ELL +G +YAKL
Sbjct: 179 AALERLMKN----RTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 275 bits (705), Expect = 6e-92
Identities = 123/243 (50%), Positives = 160/243 (65%), Gaps = 9/243 (3%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++F N++F Y P P+L V TI A + VAIVG SGSGKST + LL R Y+ S G I
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 251
IDG + ++ + LR IG V Q+ L I NI YG P D +E++ AAK A +H
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIH 117
Query: 252 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309
+ I+ P GY+T+V + LSGG+KQR+AIARAIL++P ILLLDEATSALD+ +E +
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTE---R 174
Query: 310 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 369
+ ALR+ K RT IVIAHRLSTI D+I+V+ DGRI+E G H ELL KG LYA++
Sbjct: 175 EIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMW 233
Query: 370 KRQ 372
K Q
Sbjct: 234 KAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 290 bits (744), Expect = 6e-92
Identities = 138/340 (40%), Positives = 204/340 (60%), Gaps = 9/340 (2%)
Query: 37 GLWNMSFITLYRSTQVMAVL-LGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSS 95
L + +L + + +L G + ++ G+++ QL + + + I R+ +
Sbjct: 376 ALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTD 435
Query: 96 LLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCL 155
Q+ A E++ ++D P + + L +L G ++F N+SF Y P+L + L
Sbjct: 436 FQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSL 494
Query: 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 215
I E VAIVG SGSGKST + LLL LY+P G+I +DG L D+D+ LR ++G+V Q
Sbjct: 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQ 554
Query: 216 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGG 273
+P L I+ NI G P + +E+I AA+ A HEFI +LP GY+T V + LSGG
Sbjct: 555 DPFLFSGSIRENIALGNP-EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGG 613
Query: 274 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 333
Q+QR+A+ARA+L P ILLLDEATSALD E+E + L + RTVI+IAHRLS
Sbjct: 614 QRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL----QGRTVIIIAHRLS 669
Query: 334 TIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373
TI++ DRI+V+D G+I+E G+H ELL +G LYA+L ++Q
Sbjct: 670 TIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 268 bits (688), Expect = 2e-89
Identities = 109/235 (46%), Positives = 153/235 (65%), Gaps = 9/235 (3%)
Query: 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 189
G ++F N++F Y P+L + +I+ E VAIVG +G+GK+T +NLL+R Y+P G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 190 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAY 249
QI IDG + D+ + LR IG V Q+ L I NI G P + +E++ AAK+A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAG 117
Query: 250 VHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 307
H+FI+ LP GY+T++ + LS G++Q +AIARA+LRDP IL+LDEATS +D+E+E
Sbjct: 118 AHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKL 177
Query: 308 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 362
++ L L RT I+IAHRLSTIK D+I+V+DDG+IIE G H ELL K
Sbjct: 178 IQEALEKLMKG----RTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 274 bits (703), Expect = 2e-87
Identities = 144/374 (38%), Positives = 209/374 (55%), Gaps = 13/374 (3%)
Query: 3 RTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSI 62
R V+++G + E R+ + + ++ + A + + L S + VL +
Sbjct: 204 RVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSI-SSPITQLIASLALAVVLFIALFQ 262
Query: 63 -MIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQS-IGATEKVFQLIDLLPSNQFLS 120
G ++ T ++ + + + N+++ +Q + A E +F L+D P +
Sbjct: 263 AQAGSLTAGDFTAFIT-AMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD--T 319
Query: 121 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 180
++R G V+F N++F YP R P L+ + L IE E VA+VG SGSGKST VNL+
Sbjct: 320 GTRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLI 378
Query: 181 LRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240
R YEP GQI +DG L D + LR ++ V Q+ L I +NI YG + +
Sbjct: 379 PRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAE 438
Query: 241 IEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATS 298
IE A AY +F+ LP G +T + ++ LLSGGQ+QR+AIARA+L+D IL+LDEATS
Sbjct: 439 IERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATS 498
Query: 299 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 358
ALD+ESE V+ L L RT +VIAHRLSTI+ DRIVV+DDGRI+E G H EL
Sbjct: 499 ALDNESERLVQAALERLMQG----RTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNEL 554
Query: 359 LHKGRLYAKLVKRQ 372
L + LYA+L Q
Sbjct: 555 LARNGLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 261 bits (668), Expect = 4e-82
Identities = 124/285 (43%), Positives = 177/285 (62%), Gaps = 12/285 (4%)
Query: 92 NLSSLLQS-IGATEKVFQLIDLLPSNQFLSEGV-KLQRLMGHVQFVNISFHYPSRPTVPI 149
N+++ Q + A + +F ++DL Q EG ++R G ++F N++F YP + P
Sbjct: 303 NVNAQFQRGMAACQTLFAILDL---EQEKDEGKRVIERAKGDIEFRNVTFTYPGKEV-PA 358
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209
L ++ I A + VA+VG SGSGKST NLL R Y+ +G+I +DG L D + LR +
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418
Query: 210 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD- 268
+ V Q L I +NI Y + E IE AA+ AY +FI + G +T++ ++
Sbjct: 419 VALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENG 478
Query: 269 -LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 327
LLSGGQ+QRIAIARA+LRD IL+LDEATSALD+ESE ++ L L+ + RT +V
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN----RTSLV 534
Query: 328 IAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 372
IAHRLSTI+ D I+V++DG I+E G HAELL + +YA+L K Q
Sbjct: 535 IAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 245 bits (628), Expect = 3e-81
Identities = 106/217 (48%), Positives = 129/217 (59%), Gaps = 46/217 (21%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++F N+SF YP RP P+L V LTI+ E VAIVG SGSGKST + LLLRLY+P+ G+I
Sbjct: 1 IEFKNVSFSYPGRP-KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 251
IDG L DLD+ LR+ I +V Q+P L I+ NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 252 EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 311
LSGGQ+QRIAIARA+LRDP IL+LDEATSALD E+E +
Sbjct: 97 ------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA 138
Query: 312 LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 348
L AL +TVIVIAHRLSTI+ DRI+V+DDGR
Sbjct: 139 LRALAKG----KTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 245 bits (628), Expect = 1e-80
Identities = 107/226 (47%), Positives = 146/226 (64%), Gaps = 7/226 (3%)
Query: 126 QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 185
L G V+F N++F YP+RP +L V T+ EV A+VG SGSGKST V LL Y+
Sbjct: 6 DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65
Query: 186 PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA 245
P GQ+ +DG P++ + ++L K+ VGQEP L ++ NI YG E ++ AA
Sbjct: 66 PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQ-SCSFECVKEAA 124
Query: 246 KQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303
++A+ H FI L GY+T V + LSGGQKQR+AIARA++R+P +L+LDEATSALD+E
Sbjct: 125 QKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184
Query: 304 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 349
SE V D +RTV+VIAHRLST++ D+I+V+D GRI
Sbjct: 185 SEQQV----QQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 253 bits (648), Expect = 5e-79
Identities = 121/324 (37%), Positives = 193/324 (59%), Gaps = 10/324 (3%)
Query: 52 VMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLI 110
++A+L+ G +++ GQ+ ++ +V + LI ++V ++ + + E+ F++
Sbjct: 254 MLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVE 313
Query: 111 DLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSG 170
D +P + + L R+ G V+F ++SF Y + + V + + VAIVG +G
Sbjct: 314 DAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSR--QGVEDVSFEAKPGQTVAIVGPTG 371
Query: 171 SGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 230
+GKST +NLL R+++P G+I IDG + + LR I V Q+ L I+ NI
Sbjct: 372 AGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRV 431
Query: 231 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP 288
G P D +E++ AA++A H+FI P GY+T+V + LSGG++QR+AIARA+L+DP
Sbjct: 432 GRP-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP 490
Query: 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 348
IL+LDEATSALD E+E VK L L RT +IAHRLST++ DRI+V D+GR
Sbjct: 491 PILILDEATSALDVETEAKVKAALDELMKG----RTTFIIAHRLSTVRNADRILVFDNGR 546
Query: 349 IIEVGNHAELLHKGRLYAKLVKRQ 372
++E G+ EL+ +G +A L++ Q
Sbjct: 547 VVESGSFDELVARGGRFAALLRAQ 570
|
Length = 588 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 4e-75
Identities = 135/342 (39%), Positives = 187/342 (54%), Gaps = 12/342 (3%)
Query: 37 GLWNMSFITLYRSTQVMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSS 95
G I L + +L G ++I G +SP QL + + + R+
Sbjct: 361 GNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQD 420
Query: 96 LLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHY-PSRPTVPILNHVC 154
Q+ A E++ +++ P+ + L L G + F NI F Y P P +L+++
Sbjct: 421 FQQTGIALERLGDILNS-PTEPRSAGLAALPELRGAITFENIRFRYAPDSP--EVLSNLN 477
Query: 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 214
L I+ E + IVG SGSGKST LL RLY P GQ+ +DG L D WLR ++G V
Sbjct: 478 LDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVL 537
Query: 215 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSG 272
QE L I+ NI P E + AAK A H+FI LP GY T V + LSG
Sbjct: 538 QENVLFSRSIRDNIALCNPG-APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSG 596
Query: 273 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 332
GQ+QRIAIARA++ +P IL+ DEATSALD ESE + + + C+ RTVI+IAHRL
Sbjct: 597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREI---CRG-RTVIIIAHRL 652
Query: 333 STIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 374
ST++A DRI+V++ G+I E G H ELL LYA+L ++Q+
Sbjct: 653 STVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQQSG 694
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 231 bits (591), Expect = 7e-75
Identities = 117/244 (47%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 132 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 190
+ F ++ F Y +P P IL+++ L I+ EVV IVG SGSGKST L+ R Y P +G+
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 191 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 250
+ +DG L D WLR ++G V QE L I+ NI P + E + AAK A
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPG-MSMERVIEAAKLAGA 117
Query: 251 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 308
H+FI LP GY+T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 118 HDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAI 177
Query: 309 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 368
+H + C RTVI+IAHRLST+K DRI+V++ GRI+E G+H ELL + LYA L
Sbjct: 178 MRNMHDI---CA-GRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233
Query: 369 VKRQ 372
+ Q
Sbjct: 234 YQLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 237 bits (607), Expect = 6e-74
Identities = 143/379 (37%), Positives = 203/379 (53%), Gaps = 32/379 (8%)
Query: 4 TVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIM 63
TV+ +G EE E RY LE I+ ++ + N ++ + + + + + +
Sbjct: 134 TVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVE 193
Query: 64 IGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIG-ATEKVFQLI-------DLLPS 115
GQ++ L + LS L +G + ++ Q + DLL
Sbjct: 194 EGQLTVGDLVNVNAL-----------LFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242
Query: 116 NQFLSEGVKLQRLM----GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGS 171
+S+ L G V F+N+SF Y R PILN + TI + VAIVG SG+
Sbjct: 243 EAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRR--PILNGISFTIPLGKTVAIVGESGA 300
Query: 172 GKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 231
GKST + LL R Y+ + G I IDG + D+ + LR IG V Q+ L I NI YG
Sbjct: 301 GKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYG 360
Query: 232 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPA 289
P D E++ AA+ A +H+FI SLP GY+T V + LSGG+KQR+AIAR IL++P
Sbjct: 361 RP-DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPP 419
Query: 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 349
IL+LDEATSALD+ +E ++ L + RT +VIAHRLSTI D I+V+D+GRI
Sbjct: 420 ILILDEATSALDTHTEQAIQAALREVSAG----RTTLVIAHRLSTIIDADEIIVLDNGRI 475
Query: 350 IEVGNHAELLHKGRLYAKL 368
+E G H ELL G LYA++
Sbjct: 476 VERGTHEELLAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 221 bits (566), Expect = 3e-71
Identities = 99/223 (44%), Positives = 137/223 (61%), Gaps = 8/223 (3%)
Query: 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 189
G ++F N+SF YP++ P L++V LTI A E VAI+G GSGKST + LL LY+P+ G
Sbjct: 1 GRIEFRNVSFSYPNQEI-PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 190 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAY 249
+ +DG + LD LR IG+V Q+ L ++ NI G P +E I AA+ A
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAG 118
Query: 250 VHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 307
V +F+ P G + + + LSGGQ+Q +A+ARA+L DP ILLLDE TSA+D SE
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 308 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 350
+K L L D +T+I+I HR S + VDRI+V+D GRI+
Sbjct: 179 LKERLRQLLGD----KTLIIITHRPSLLDLVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 211 bits (539), Expect = 4e-67
Identities = 88/229 (38%), Positives = 138/229 (60%), Gaps = 13/229 (5%)
Query: 130 GHVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
G ++F N+S Y RP P+L ++ +I+ E V IVG +GSGKS+ + L RL E S
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 189 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA-KQ 247
G I IDG ++ + + LR +I + Q+P L I+SN+ P +++ W A ++
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNL---DPFGEYSDEELWQALER 115
Query: 248 AYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305
+ EF+ SLP G +T+V++ LS GQ+Q + +ARA+LR IL+LDEAT+++D E++
Sbjct: 116 VGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175
Query: 306 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 354
++ + DC TV+ IAHRL TI DRI+V+D GR++E +
Sbjct: 176 ALIQKTIREAFKDC----TVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 221 bits (565), Expect = 5e-67
Identities = 106/281 (37%), Positives = 157/281 (55%), Gaps = 11/281 (3%)
Query: 97 LQSIGATEKVFQLIDL-LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCL 155
A +K+F L++ + + + + N+SF YP L+ + L
Sbjct: 285 AAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPA--LSDLNL 342
Query: 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 215
TI+A ++ A+VG SG+GKST +NLLL P+ G+I ++G L DL R++I +V Q
Sbjct: 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402
Query: 216 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGG 273
P L I+ NI+ P D +E+I A QA + EF+ P G +T++ + LSGG
Sbjct: 403 NPYLFAGTIRENILLARP-DASDEEIIAALDQAGLLEFV-PKPDGLDTVIGEGGAGLSGG 460
Query: 274 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 333
Q QR+A+ARA+L ++LLLDE T+ LD+E+E + L L +TV+VI HRL
Sbjct: 461 QAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ----KTVLVITHRLE 516
Query: 334 TIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 374
DRIVV+D+GR++E G H EL K LYA L+K+Q
Sbjct: 517 DAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557
|
Length = 559 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 1e-66
Identities = 102/241 (42%), Positives = 148/241 (61%), Gaps = 8/241 (3%)
Query: 123 VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 182
+ RL G ++F N+SF YP + T P L++V LTI E VAI+G GSGKST + LLL
Sbjct: 455 LHRPRLQGEIEFRNVSFAYPGQET-PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG 513
Query: 183 LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIE 242
LY+P++G + +DG + +D LR IG+V Q+P+L ++ NI G P +E+I
Sbjct: 514 LYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP-YADDEEIL 572
Query: 243 WAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSAL 300
AA+ A V EF+ P G + + + LSGGQ+Q +A+ARA+LRDP ILLLDE TSA+
Sbjct: 573 RAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAM 632
Query: 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 360
D+ SE K L +T++++ HR S + VDRI+V+D+GRI+ G ++L
Sbjct: 633 DNRSEERFKDRLKRWLAG----KTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688
Query: 361 K 361
Sbjct: 689 A 689
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 5e-64
Identities = 99/249 (39%), Positives = 151/249 (60%), Gaps = 14/249 (5%)
Query: 126 QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 185
RL G+V+ NI+F Y S P++ + LT++ + VA+VG SGSGKST L+ LY+
Sbjct: 472 PRLSGYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ 530
Query: 186 PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA 245
P G+I DG P ++ L + V Q+ L + ++ N+ P + + D+ A
Sbjct: 531 PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPT-IPDADLVRAC 589
Query: 246 KQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303
K A +H+ I S P GY+ + + LSGGQ+QR+ IARA++R+P+IL+LDEATSALD E
Sbjct: 590 KDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPE 649
Query: 304 SEHYVKGVLHALRNDCKTKR--TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 361
+E K + LR +R T I++AHRLSTI+ D I+V++ G++++ G H EL
Sbjct: 650 TE---KIIDDNLR-----RRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV 701
Query: 362 GRLYAKLVK 370
G YA+L++
Sbjct: 702 GGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 9e-63
Identities = 109/250 (43%), Positives = 151/250 (60%), Gaps = 15/250 (6%)
Query: 127 RLMGHVQFVNISFHY-PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 185
+L G ++ ++F Y P P IL+ V L IE E VAIVG SGSGKST + LLL
Sbjct: 447 KLSGAIEVDRVTFRYRPDGP--LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET 504
Query: 186 PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEW-A 244
P G ++ DG L LD++ +R ++G V Q +L+ I NI G P + D W A
Sbjct: 505 PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTL---DEAWEA 561
Query: 245 AKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
A+ A + E I ++P G T++ + LSGGQ+QR+ IARA++R P ILL DEATSALD+
Sbjct: 562 ARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDN 621
Query: 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 362
++ V L L K T IVIAHRLSTI+ DRI V+D GR+++ G + EL+ +
Sbjct: 622 RTQAIVSESLERL------KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMARE 675
Query: 363 RLYAKLVKRQ 372
L+A+L +RQ
Sbjct: 676 GLFAQLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 206 bits (526), Expect = 3e-61
Identities = 119/323 (36%), Positives = 193/323 (59%), Gaps = 10/323 (3%)
Query: 52 VMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLI 110
+M +L+ G ++I G++S ++ ++ + LI +M ++ + ++ E F L
Sbjct: 254 MMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLE 313
Query: 111 DLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSG 170
D + + ++ +L + G V+F +I+F + + + + V +A + VAIVG +G
Sbjct: 314 DSVFQREEPADAPELPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTG 371
Query: 171 SGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 230
+GK+T +NLL R+Y+P+ GQI IDG + + LR+ I V Q+ L I+ NI
Sbjct: 372 AGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRL 431
Query: 231 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP 288
G + +E++ AAK A H+FIL GY+TLV + + LSGG++QR+AIARAIL++
Sbjct: 432 G-REGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNA 490
Query: 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 348
IL+LDEATSALD E+E VK + ALR + RT +IAHRLST++ D ++ +D GR
Sbjct: 491 PILVLDEATSALDVETEARVKNAIDALRKN----RTTFIIAHRLSTVRNADLVLFLDQGR 546
Query: 349 IIEVGNHAELLHKGRLYAKLVKR 371
+IE G+ EL+ K + KL++R
Sbjct: 547 LIEKGSFQELIQKDGRFYKLLRR 569
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 196 bits (499), Expect = 2e-57
Identities = 93/276 (33%), Positives = 149/276 (53%), Gaps = 10/276 (3%)
Query: 98 QSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTI 157
Q I + ++ ++D P F E + ++ N+SF YP + T L + LT+
Sbjct: 305 QVIASARRLNDILDQKPEVTFPDE--QTATTGQALELRNVSFTYPGQQT-KALKNFNLTL 361
Query: 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 217
E VAI+G SGSGKST + LL ++P G I ++G + LD + LRE I + Q
Sbjct: 362 AQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRV 421
Query: 218 QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 275
L ++ N+ P D +E++ A +Q + + + S P G T + + LSGG++
Sbjct: 422 HLFSGTLRDNLRLANP-DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGER 480
Query: 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335
+R+A+ARA+L D + LLDE T LD +E V +L +T++++ HRL +
Sbjct: 481 RRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEG----KTLLMVTHRLRGL 536
Query: 336 KAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 371
+ +DRI+V+D+G+IIE G HAELL Y +L +
Sbjct: 537 ERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQL 572
|
Length = 573 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 4e-57
Identities = 121/318 (38%), Positives = 176/318 (55%), Gaps = 24/318 (7%)
Query: 53 MAVLL--GGMSIMI--GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSI----GATE 104
MA LL GG S M+ G ++ QLT +V+Y +I W M+ L+ + + A
Sbjct: 233 MANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMI---WPML-ALAWMFNIVERGSAAYS 288
Query: 105 KVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNI-SFHYPSRPTVPILNHVCLTIEANEVV 163
++ ++ P + SE V R G + VNI F YP P L +V T++ +++
Sbjct: 289 RIRAMLAEAPVVKDGSEPVPEGR--GELD-VNIRQFTYPQT-DHPALENVNFTLKPGQML 344
Query: 164 AIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD 223
I G +GSGKST ++L+ R ++ S+G I PLT L + R ++ V Q P L
Sbjct: 345 GICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDT 404
Query: 224 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIA 281
+ +NI G P D ++IE A+ A VH+ IL LP GY+T V + +LSGGQKQRI+IA
Sbjct: 405 VANNIALGRP-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIA 463
Query: 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 341
RA+L + IL+LD+A SA+D +EH +LH LR RTVI+ AHRLS + I
Sbjct: 464 RALLLNAEILILDDALSAVDGRTEHQ---ILHNLRQ-WGEGRTVIISAHRLSALTEASEI 519
Query: 342 VVIDDGRIIEVGNHAELL 359
+V+ G I + GNH +L
Sbjct: 520 LVMQHGHIAQRGNHDQLA 537
|
Length = 569 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 9e-57
Identities = 91/215 (42%), Positives = 127/215 (59%), Gaps = 9/215 (4%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++F +S YP R P L V T+ E VA+VG SG+GKST +NLLL +P++G I
Sbjct: 322 LEFSGVSVAYPGRR--PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 251
++G PL D D R++I +V Q P L I NI P D + +I A ++A +
Sbjct: 380 AVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARP-DASDAEIREALERAGLD 438
Query: 252 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309
EF+ +LP G +T + + LSGGQ QR+A+ARA LRD +LLLDE T+ LD+E+E V
Sbjct: 439 EFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVL 498
Query: 310 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 344
L AL RTV+++ HRL+ DRIVV+
Sbjct: 499 EALRALAQG----RTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 3e-55
Identities = 84/224 (37%), Positives = 138/224 (61%), Gaps = 8/224 (3%)
Query: 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 214
T+ A + +A+VG SG+GK++ +N LL + P G + I+G L +LD R+ + +VG
Sbjct: 371 FTLPAGQRIALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELRELDPESWRKHLSWVG 429
Query: 215 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSG 272
Q PQL ++ N++ G P D +E ++ A + A+V EF+ LP G +T + D LS
Sbjct: 430 QNPQLPHGTLRDNVLLGNP-DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSV 488
Query: 273 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 332
GQ QR+A+ARA+L+ +LLLDE T++LD+ SE V+ AL N ++T +++ H+L
Sbjct: 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQL---VMQAL-NAASRRQTTLMVTHQL 544
Query: 333 STIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTESL 376
+ D+I V+ DG+I++ G++AEL G L+A L+ + E +
Sbjct: 545 EDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQEEI 588
|
Length = 588 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 6e-55
Identities = 97/289 (33%), Positives = 149/289 (51%), Gaps = 30/289 (10%)
Query: 96 LLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCL 155
L Q I + ++ ++ + P F + + N+SF YP +P P+L + L
Sbjct: 304 LGQVIASARRINEITEQKPEVTFPTTS-TAAADQVSLTLNNVSFTYPDQPQ-PVLKGLSL 361
Query: 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 215
I+A E VA++G +G GKST + LL R ++P G+I ++G P+ D LR+ I V Q
Sbjct: 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQ 421
Query: 216 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD------- 268
L ++ N++ P IE +Q G E L++DD
Sbjct: 422 RVHLFSATLRDNLLLAAPNASDEALIE-VLQQV-----------GLEKLLEDDKGLNAWL 469
Query: 269 -----LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 323
LSGG+++R+ IARA+L D +LLLDE T LD+E+E +L L + K
Sbjct: 470 GEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQ---ILELLAEHAQNK- 525
Query: 324 TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 372
TV++I HRL+ ++ DRI V+D+G+IIE G H ELL + Y +L +R
Sbjct: 526 TVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQRL 574
|
Length = 574 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 3e-53
Identities = 97/247 (39%), Positives = 148/247 (59%), Gaps = 9/247 (3%)
Query: 125 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 184
L L G + ++S+ Y IL+ + LTI+ N IVG+SGSGKST LL+ +
Sbjct: 467 LNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF 524
Query: 185 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWA 244
+ G+I ++GF L D+D LR+ I ++ QEP + I N++ G ++V ++I A
Sbjct: 525 QARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAA 584
Query: 245 AKQAYVHEFILSLPCGYET--LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
+ A + + I ++P GY+T + +SGGQKQRIA+ARA+L D +L+LDE+TS LD+
Sbjct: 585 CEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDT 644
Query: 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 362
+E + L L +T+I +AHRLS K D+I+V+D G+IIE G+H ELL +
Sbjct: 645 ITEKKIVNNLLNL-----QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRN 699
Query: 363 RLYAKLV 369
YA L+
Sbjct: 700 GFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 9e-52
Identities = 82/226 (36%), Positives = 121/226 (53%), Gaps = 25/226 (11%)
Query: 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 192
+ N+SF YP P L+ + LTI+ E V IVG +GSGKST + LL L P+ G++
Sbjct: 1 ELKNLSFSYPDGAR-PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 193 IDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGC-----PKDVKNEDIEWAA 245
+DG LT L ++ LR K+G V Q P Q ++ + +G P++ E +E A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 246 KQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303
+ G E L D LSGGQKQR+AIA + DP ILLLDE T+ LD
Sbjct: 120 EL-----------VGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 304 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGR 348
+ +L L+ + K T+I++ H L + + DR++V++DG+
Sbjct: 169 GRRELLELLKKLKAEGK---TIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 2e-51
Identities = 102/275 (37%), Positives = 162/275 (58%), Gaps = 14/275 (5%)
Query: 94 SSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHV 153
S L Q++ A E+VF+L+D P Q+ ++ LQ G + N+SF Y R +L ++
Sbjct: 306 SMLQQAVVAGERVFELMDG-PRQQYGNDDRPLQS--GRIDIDNVSFAY--RDDNLVLQNI 360
Query: 154 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 213
L++ + VA+VG +GSGKST +LL+ Y ++G+I +DG PL+ L LR+ + V
Sbjct: 361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420
Query: 214 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLS 271
Q+P +L +N+ G +D+ E + A + + E SLP G T + + + LS
Sbjct: 421 QQDPVVLADTFLANVTLG--RDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLS 478
Query: 272 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR 331
GQKQ +A+AR +++ P IL+LDEAT+ +DS +E ++ L A+R T++VIAHR
Sbjct: 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE----HTTLVVIAHR 534
Query: 332 LSTIKAVDRIVVIDDGRIIEVGNHAELL-HKGRLY 365
LSTI D I+V+ G+ +E G H +LL +GR +
Sbjct: 535 LSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYW 569
|
Length = 592 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 5e-50
Identities = 96/279 (34%), Positives = 146/279 (52%), Gaps = 16/279 (5%)
Query: 90 VDNLSSLLQSIGATEKVF----QLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRP 145
+D + + + +L+ PS + L GH+ N++ P
Sbjct: 274 IDGAIGGWKQFSGARQAYKRLNELLANYPSR---DPAMPLPEPEGHLSVENVTI-VPPGG 329
Query: 146 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 205
P L + +++A E +AI+G SGSGKST L++ ++ P+ G + +DG L D
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET 389
Query: 206 LREKIGFVGQEPQLLQMDIKSNIM-YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 264
+ IG++ Q+ +L + NI +G ++ E I AAK A VHE IL LP GY+T+
Sbjct: 390 FGKHIGYLPQDVELFPGTVAENIARFG--ENADPEKIIEAAKLAGVHELILRLPDGYDTV 447
Query: 265 VDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK 322
+ LSGGQ+QRIA+ARA+ DP +++LDE S LD E E + + AL+
Sbjct: 448 IGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALK---ARG 504
Query: 323 RTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 361
TV+VI HR S + VD+I+V+ DGRI G E+L K
Sbjct: 505 ITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 180 bits (457), Expect = 6e-50
Identities = 110/303 (36%), Positives = 158/303 (52%), Gaps = 65/303 (21%)
Query: 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY----- 184
G ++ ++++F Y SRP VPI + + ++ + AIVG +GSGKST ++LL+R Y
Sbjct: 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKND 1223
Query: 185 ---------------------------------------EPSDGQ----------IYIDG 195
E G+ I +DG
Sbjct: 1224 HHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDG 1283
Query: 196 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 255
+ D +++ LR V QEP L M I NI +G +D ED++ A K A + EFI
Sbjct: 1284 VDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFG-KEDATREDVKRACKFAAIDEFIE 1342
Query: 256 SLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 313
SLP Y+T V LSGGQKQRIAIARA+LR+P ILLLDEATS+LDS SE ++ +
Sbjct: 1343 SLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIV 1402
Query: 314 ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD----GRIIEV-GNHAELLH-KGRLYAK 367
+++ K +T+I IAHR+++IK D+IVV ++ G ++ G H ELL + +Y K
Sbjct: 1403 DIKD--KADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKK 1460
Query: 368 LVK 370
VK
Sbjct: 1461 YVK 1463
|
Length = 1466 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 9e-50
Identities = 98/278 (35%), Positives = 153/278 (55%), Gaps = 18/278 (6%)
Query: 90 VDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPI 149
+ N + + + +++ +L+ LP+ +E + L G + ++ P + PI
Sbjct: 296 IANWKQFVAARQSYKRLNELLAELPAA---AERMPLPAPQGALSVERLTAAPPGQKK-PI 351
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209
L + ++A E + I+G SGSGKST LL+ ++ P+ G + +DG DL +W RE+
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDG---ADLR-QWDREQ 407
Query: 210 ----IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 265
IG++ Q+ +L I NI + E + AA+ A VHE IL LP GY+T +
Sbjct: 408 LGRHIGYLPQDVELFDGTIAENIARFGE-EADPEKVIEAARLAGVHELILRLPQGYDTRI 466
Query: 266 DDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 323
+ LSGGQ+QRIA+ARA+ DP +++LDE S LDSE E + + A +
Sbjct: 467 GEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR---GG 523
Query: 324 TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 361
TV+VIAHR S + +VD+I+V+ DGRI G E+L K
Sbjct: 524 TVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561
|
Length = 580 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 160 bits (408), Expect = 3e-48
Identities = 73/214 (34%), Positives = 106/214 (49%), Gaps = 45/214 (21%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
N+SF YP P+L +V +IE E +AI+G SGSGKST L+L L P+ G++ +DG
Sbjct: 5 NVSFRYPGAEP-PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDG 63
Query: 196 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 255
++ D L + +G++ Q+ +L I NI
Sbjct: 64 ADISQWDPNELGDHVGYLPQDDELFSGSIAENI--------------------------- 96
Query: 256 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 315
LSGGQ+QR+ +ARA+ +P IL+LDE S LD E E + A+
Sbjct: 97 --------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGER---ALNQAI 139
Query: 316 RNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 349
T IVIAHR T+ + DRI+V++DGR+
Sbjct: 140 AALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 3e-47
Identities = 79/227 (34%), Positives = 113/227 (49%), Gaps = 31/227 (13%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-LDIRWLR 207
+L + L++E EVV I+G SGSGKST + L L EP G I +DG + D DI LR
Sbjct: 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLR 76
Query: 208 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQA-----------YVHEFIL 255
K+G V Q+ L + + N+ P VK A ++A +
Sbjct: 77 RKVGMVFQQFNLFPHLTVLENVTLA-PVKVKKLSKAEAREKALELLEKVGLADKADAY-- 133
Query: 256 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 315
P LSGGQ+QR+AIARA+ DP ++L DE TSALD E V VL +
Sbjct: 134 --P---------AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPEL---VGEVLDVM 179
Query: 316 RNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 361
++ + T+I++ H + + V DR++ +D G+IIE G E
Sbjct: 180 KDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226
|
Length = 240 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 2e-46
Identities = 72/239 (30%), Positives = 123/239 (51%), Gaps = 21/239 (8%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++ N++ Y L+ V +E E+ ++G +G+GK+T + +L L +P+ G+I
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNI-----MYGCPKDVKNEDIEWAA 245
+ G+ + + +R +IG+V QEP L ++ ++ N+ +YG K+ E IE
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 246 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305
+ L V LSGG KQR++IA A+L DP +L+LDE TS LD ES
Sbjct: 122 EL-------FGLEDKANKKVRT--LSGGMKQRLSIALALLHDPELLILDEPTSGLDPESR 172
Query: 306 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGR 363
+ +L L + T+++ H L + + DR+++++DG+II G EL K
Sbjct: 173 REIWELLRELAKE--GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229
|
Length = 293 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 1e-45
Identities = 87/245 (35%), Positives = 129/245 (52%), Gaps = 22/245 (8%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
+ ++ N+SF YP R L V L IE E V ++G +GSGKST + LL L +P+
Sbjct: 1 LRMIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS 58
Query: 189 GQIYIDGFPLTD-LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAA 245
G++ +DG + + LR+K+G V Q P QL ++ + +G N +
Sbjct: 59 GEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLE----NLGLPREE 114
Query: 246 KQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303
+ V E L L G E L+D LSGGQKQR+AIA + P ILLLDE T+ LD +
Sbjct: 115 IEERVAE-ALEL-VGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPK 172
Query: 304 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII------EVGNHA 356
+ +L L+ + +T+I++ H L + DR+VV+DDG+I+ E+ N A
Sbjct: 173 GRRELLELLKKLKEE--GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
Query: 357 ELLHK 361
ELL
Sbjct: 231 ELLLA 235
|
Length = 235 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 2e-45
Identities = 79/221 (35%), Positives = 112/221 (50%), Gaps = 47/221 (21%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++ N+S Y +LN V L IEA E+VA++G SGSGKST + + L EP G I
Sbjct: 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 192 YIDGFPLTDLD--IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQA 248
IDG LTDL+ + LR +IG V Q+ L + + NI G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 249 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 308
LSGGQ+QR+A+ARA+ DP +LLLDE TSALD + V
Sbjct: 101 ---------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV 139
Query: 309 KGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGR 348
+ +L +L+ + TV+++ H L + DR+VV+ DG+
Sbjct: 140 RALLKSLQA--QLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 5e-45
Identities = 84/234 (35%), Positives = 120/234 (51%), Gaps = 19/234 (8%)
Query: 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 190
++ N+S Y V L V L IEA E VAIVG SGSGKST +NLL L +P+ G+
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 191 IYIDGFPLTDLDIRWL----REKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKNEDIEWA 244
+ I+G LT L + L R+KIGFV Q LL + + N+ + A
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 245 AKQAYVHEFILSLPCGYETLVDDDL---LSGGQKQRIAIARAILRDPAILLLDEATSALD 301
A++ L G E + LSGGQ+QR+AIARA++ +P I+L DE T LD
Sbjct: 122 AEE-------LLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLD 174
Query: 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 355
S++ V +L L + +T+I++ H K DR++ + DG+I E
Sbjct: 175 SKTAKEVLELLRELNK--ERGKTIIMVTHDPELAKYADRVIELKDGKIEEEELD 226
|
Length = 226 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 5e-45
Identities = 81/237 (34%), Positives = 111/237 (46%), Gaps = 38/237 (16%)
Query: 132 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 190
++ N+S Y V L V L+IE E VAIVG SGSGKST +N+L L P+ G+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 191 IYIDGFPLTDLD----IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGC--PKDVKNEDIEW 243
+ +DG ++ L + R IGFV Q LL + N+ K E E
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 244 AAK-----------QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 292
A + Y E LSGGQ+QR+AIARA+ DP I+L
Sbjct: 121 AEELLERVGLGDRLNHYPSE-----------------LSGGQQQRVAIARALANDPKIIL 163
Query: 293 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 349
DE T LDSE+ V +L L + T T++V+ H + DRI+ + DG+I
Sbjct: 164 ADEPTGNLDSETGKEVMELLRELNKEAGT--TIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 9e-45
Identities = 86/285 (30%), Positives = 146/285 (51%), Gaps = 11/285 (3%)
Query: 52 VMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 111
+ A+ GG ++ G+++P L VL A + L + A E++ +++D
Sbjct: 253 LGALWAGGPAVADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVEVLD 312
Query: 112 LLPSNQFLSEGVKLQRLMGHVQFV--NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLS 169
S +G ++S YP P P+L+ V L + E VAI+G S
Sbjct: 313 AAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAP--PVLDGVSLDLPPGERVAILGPS 370
Query: 170 GSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 229
GSGKST + L L +P G++ +DG P++ LD +R ++ Q+ L ++ N+
Sbjct: 371 GSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLR 430
Query: 230 YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD 287
P D +E++ A ++ + +++ +LP G +T++ + LSGG++QR+A+ARA+L D
Sbjct: 431 LARP-DATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLAD 489
Query: 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 332
ILLLDE T LD+E+ +L L + RTV++I H L
Sbjct: 490 APILLLDEPTEHLDAETA---DELLEDLL-AALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 1e-44
Identities = 85/243 (34%), Positives = 127/243 (52%), Gaps = 41/243 (16%)
Query: 132 VQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 189
++ N+S + TV L+ V L I E+ I+G SG+GKST + L+ L P+ G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 190 QIYIDGFPLTDLD---IRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNED 240
+++DG LT L +R LR+KIG + Q LL + N+ + G PK
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPK------ 115
Query: 241 IEWAAKQAYVHEFILSLPCGYETLVD-DDL-------LSGGQKQRIAIARAILRDPAILL 292
A + V E + LV D LSGGQKQR+AIARA+ +P ILL
Sbjct: 116 ---AEIKQRVAELL--------ELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILL 164
Query: 293 LDEATSALDSESEHYVKGVLHALRN-DCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 350
DEATSALD E+ + +L L++ + + T+++I H + +K + DR+ V+D GR++
Sbjct: 165 CDEATSALDPET---TQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLV 221
Query: 351 EVG 353
E G
Sbjct: 222 EEG 224
|
Length = 339 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 1e-44
Identities = 73/223 (32%), Positives = 117/223 (52%), Gaps = 33/223 (14%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDLDI 203
L + L I E+ A++G SG GKST + LL RL + P +G++ +DG + DLD+
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74
Query: 204 R--WLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDVKNEDIEWAAKQAYVHEFIL 255
LR ++G V Q+P I N+ YG K+ +E +E A ++A + +
Sbjct: 75 DVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD--- 131
Query: 256 SLPCGYETLVDDDL----LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 311
V D L LSGGQ+QR+ +ARA+ +P +LLLDE TSALD S ++ +
Sbjct: 132 --------EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEEL 183
Query: 312 LHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
+ L+ + T++++ H + V DR + +GR++E G
Sbjct: 184 IAELKKE----YTIVIVTHNMQQAARVADRTAFLLNGRLVEFG 222
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 151 bits (385), Expect = 5e-44
Identities = 74/232 (31%), Positives = 116/232 (50%), Gaps = 23/232 (9%)
Query: 136 NISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 194
N+S +P+ +V L+ V +I+ E + +VG SGSGKST +L L +P+ G I D
Sbjct: 6 NLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFD 65
Query: 195 GFPLTDLDIRWLRE---KIGFVGQEPQL-L--QMDIKSNIMYGCPKDVKNEDIEWAAKQA 248
G L L R + +I V Q+P L +M I I + + A K+A
Sbjct: 66 GKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEP-LRIHGKLSKKEARKEA 124
Query: 249 YVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
+ + L ++ L LSGGQ+QR+AIARA+ +P +L+ DE TSALD
Sbjct: 125 VLLLLVGVG------LPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV 178
Query: 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
+ + +L L+ + T++ I H L + + DR+ V+ G+I+E G
Sbjct: 179 SVQAQILDLLKKLQE--ELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 3e-43
Identities = 79/229 (34%), Positives = 118/229 (51%), Gaps = 27/229 (11%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++ N+ + +L + LT++ EVV I+G SGSGKST + + L EP G I
Sbjct: 1 IEIKNLHKSFGDFH---VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 192 YIDGFPLTD--LDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQA 248
IDG LTD +I LR+K+G V Q+ L + + NI P VK A ++A
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA-PIKVKGMSKAEAEERA 116
Query: 249 YVH-------EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 301
+ + P LSGGQ+QR+AIARA+ +P ++L DE TSALD
Sbjct: 117 LELLEKVGLADKADAYP---------AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD 167
Query: 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 349
E V VL +++ + T++V+ H + + V DR++ +DDGRI
Sbjct: 168 PE---LVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 160 bits (405), Expect = 4e-43
Identities = 100/314 (31%), Positives = 160/314 (50%), Gaps = 62/314 (19%)
Query: 92 NLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN 151
N++ ++S+ AT ++++I+ P + +G KL+ + +QF N+ FHY +R V I
Sbjct: 344 NITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKDIK-KIQFKNVRFHYDTRKDVEIYK 402
Query: 152 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-DGFPLTDLDIRWLREKI 210
+ T+ + A VG SG GKST + L+ RLY+P++G I I D L D++++W R KI
Sbjct: 403 DLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKI 462
Query: 211 GFVGQEPQLLQMDIKSNIMYGC-------------------PKDVKNEDIEWAAK----- 246
G V Q+P L IK+NI Y ++ KN+ AK
Sbjct: 463 GVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDL 522
Query: 247 ----QAYVHEFILSLPCGYETLVDDDLLS------------------------------G 272
++ + Y+T+ D +++ G
Sbjct: 523 NDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSG 582
Query: 273 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 332
GQKQRI+IARAI+R+P IL+LDEATS+LD++SE+ V+ ++ L+ + R I+IAHRL
Sbjct: 583 GQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGN--ENRITIIIAHRL 640
Query: 333 STIKAVDRIVVIDD 346
STI+ + I V+ +
Sbjct: 641 STIRYANTIFVLSN 654
|
Length = 1466 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 5e-43
Identities = 73/217 (33%), Positives = 105/217 (48%), Gaps = 61/217 (28%)
Query: 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 192
+ N+SF Y R L++V LT++A E+VA+VG +GSGKST + + L +P+ G+I
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 193 IDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE 252
IDG + L + LR +IG+V PQL
Sbjct: 58 IDGKDIAKLPLEELRRRIGYV---PQL--------------------------------- 81
Query: 253 FILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 312
SGGQ+QR+A+ARA+L +P +LLLDE TS LD S +L
Sbjct: 82 ------------------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRE---RLL 120
Query: 313 HALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGR 348
LR + RTVI++ H A DR++V+ DG+
Sbjct: 121 ELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 6e-43
Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 20/238 (8%)
Query: 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 190
++ N+S + V L V L++ E+ I+G SG+GKST + + L P+ G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 191 IYIDGFPLTDL---DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAK 246
+ +DG LT L ++R R +IG + Q LL + N+ P ++
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL--PLEI------AGVP 113
Query: 247 QAYVHEFILSLP--CGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
+A + E +L L G E D LSGGQKQR+ IARA+ +P +LL DEATSALD
Sbjct: 114 KAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDP 173
Query: 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 359
E+ + +L + + T+++I H + +K + DR+ V++ G ++E G E+
Sbjct: 174 ETTQSILALLRDIN--RELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 2e-42
Identities = 77/236 (32%), Positives = 129/236 (54%), Gaps = 21/236 (8%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++ N+SF YP+ L +V I E VAI+G +GSGKST +L L +P G+I
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGC------PKDVKNEDIEW 243
IDG ++ +++ +R+KIG + Q P Q + ++ +I +G PK +K + I+
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMK-DIIDD 125
Query: 244 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303
AK+ + +++ P LSGGQKQR+AIA + +P I++ DE+TS LD +
Sbjct: 126 LAKKVGMEDYLDKEP---------QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176
Query: 304 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 359
+ +K ++ LR K+T+I I H + D+++V +G++I G E+L
Sbjct: 177 GKREIKKIMVDLRK--TRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEIL 230
|
Length = 271 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 1e-41
Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 25/225 (11%)
Query: 130 GHVQFVNISFHY-PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
G ++ N+S Y P P P+L +V ++A E + IVG +G+GKST + L R E +
Sbjct: 5 GEIEVENLSVRYAPDLP--PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 189 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 248
G+I IDG ++ + + LR + + Q+P L I+SN+ D + E++ ++
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL------DPFD---EYSDEEI 113
Query: 249 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 308
Y L + G LS GQ+Q + +ARA+L+ P +L+LDEAT+++D ++ +
Sbjct: 114 YG---ALRVSEGGLN------LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI 164
Query: 309 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 353
+ + + T++ IAHRL TI D+I+V+D G + E
Sbjct: 165 QKTIREEFTNS----TILTIAHRLRTIIDYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 9e-41
Identities = 76/241 (31%), Positives = 115/241 (47%), Gaps = 47/241 (19%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++ +S Y S V L+ + LT+E E +A++G SG GK+T + L+ L P G+I
Sbjct: 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGC-----PKDVKNEDIEWAA 245
IDG +T + R IG V Q+ L + + NI +G PK +
Sbjct: 58 LIDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 246 K--------QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 297
+ Y HE LSGGQ+QR+A+ARA+ R+P++LLLDE
Sbjct: 116 ELVGLEGLLNRYPHE-----------------LSGGQQQRVALARALAREPSLLLLDEPL 158
Query: 298 SALDSES----EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEV 352
SALD++ +K + L T I + H A+ DRI V+++GRI++V
Sbjct: 159 SALDAKLREELREELKELQREL------GITTIYVTHDQEEALALADRIAVMNEGRIVQV 212
Query: 353 G 353
G
Sbjct: 213 G 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-40
Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 47/215 (21%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
N+S Y + L+ + LT+E E+ ++G +G+GK+T + ++L L +P G+I + G
Sbjct: 5 NLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG 61
Query: 196 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 255
+ + ++ +IG++ +EP L + L
Sbjct: 62 KDIKK-EPEEVKRRIGYLPEEPSLYEN--------------------------------L 88
Query: 256 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 315
+ E L LSGG KQR+A+A+A+L DP +L+LDE TS LD ES +L L
Sbjct: 89 T---VRENL----KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLREL 141
Query: 316 RNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 349
+ + +T+++ +H L + + DR+ ++++GRI
Sbjct: 142 KKE---GKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 3e-40
Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 23/237 (9%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++F N+S Y ++ ++ V LTIE E + ++G SGSGK+T + ++ RL EP+ G+I
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 250
IDG ++DLD LR KIG+V Q+ L + + NI PK + + +
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIAT-VPKLLG---WDKERIKKRA 114
Query: 251 HEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 308
E + + D LSGGQ+QR+ +ARA+ DP ILL+DE ALD +
Sbjct: 115 DELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITR--- 171
Query: 309 KGVLHALRNDCKT-----KRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 359
L+ + K +T++ + H + +K DRI V+D G I++ E+L
Sbjct: 172 ----KQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEIL 224
|
Length = 309 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 139 bits (354), Expect = 1e-39
Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 28/232 (12%)
Query: 132 VQFVNISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 190
++ N+S Y V L + L++E E VA+VG SG GKST + ++ L P+ G+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 191 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAY 249
+ +DG P+T G+V Q+ LL + + N+ G ++ + + A +
Sbjct: 61 VLVDGEPVTGPGPD-----RGYVFQQDALLPWLTVLDNVALG----LELQGVPKAEARER 111
Query: 250 VHEFI----LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305
E + LS G+E LSGG +QR+A+ARA+ DP +LLLDE SALD+ +
Sbjct: 112 AEELLELVGLS---GFENAYPHQ-LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTR 167
Query: 306 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV---DRIVVID--DGRIIEV 352
++ L + +T +TV+++ H + +AV DR+VV+ GRI+
Sbjct: 168 EQLQEELLDIWR--ETGKTVLLVTHDID--EAVFLADRVVVLSARPGRIVAE 215
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 1e-39
Identities = 77/240 (32%), Positives = 118/240 (49%), Gaps = 23/240 (9%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
M ++ N+ + S + +N L IE E V ++G SG GKST + ++ L EP+
Sbjct: 1 MAELELKNVRKSFGSFEVLKDVN---LDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS 57
Query: 189 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNI-----MYGCPKDVKNEDIE 242
G+I IDG +TDL + I V Q L M + NI + G PK ++ ++
Sbjct: 58 GEILIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVK 115
Query: 243 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
AK + + P LSGGQ+QR+A+ARA++R P + LLDE S LD+
Sbjct: 116 EVAKLLGLEHLLNRKP---------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 361
+ ++ + L + T I + H + DRIVV++DGRI +VG EL +
Sbjct: 167 KLRVLMRSEIKKLHE--RLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224
|
Length = 338 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 5e-39
Identities = 77/236 (32%), Positives = 117/236 (49%), Gaps = 23/236 (9%)
Query: 136 NISFHYP--SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 193
+ISF YP + L V ++ E VAIVG +GSGKST LL L P G I +
Sbjct: 10 HISFRYPDAATYA---LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITV 66
Query: 194 DGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMY-----GCPKDVKNEDIEWAAK 246
G L++ + +R ++G V Q P Q + ++ ++ + G P++ E ++ A +
Sbjct: 67 GGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALR 126
Query: 247 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306
Q + +F+ P LSGGQKQR+AIA + P I++LDEATS LD
Sbjct: 127 QVGMEDFLNREPHR---------LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRR 177
Query: 307 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 362
V + L+ + TV+ I H L DR++V++ G I+E G E+ G
Sbjct: 178 EVLETVRQLKE--QKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231
|
Length = 279 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 6e-39
Identities = 83/228 (36%), Positives = 123/228 (53%), Gaps = 17/228 (7%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
M ++F +S+ S IL + + E + IVG SG+GKST + L+ RL +P++
Sbjct: 1 MNEIEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTE 57
Query: 189 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP--KDVKNEDIEWAAK 246
G I IDG + +D+ LR KIG V Q+P L + +K NI YG P K KN D+E+
Sbjct: 58 GSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYG-PMLKGEKNVDVEYYLS 116
Query: 247 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306
I+ L Y T + LSGG+ QR++IAR + +P +LLLDE TSALD S
Sbjct: 117 -------IVGLNKEYATRDVKN-LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTE 168
Query: 307 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
++ ++ L+N K TVI I H + K + D ++ G ++E
Sbjct: 169 IIEELIVKLKN--KMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214
|
Length = 241 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 147 bits (371), Expect = 1e-38
Identities = 84/245 (34%), Positives = 138/245 (56%), Gaps = 13/245 (5%)
Query: 130 GHVQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
G V+F N Y R + +L H+ +TI E V IVG +G+GKS+ L R+ E ++
Sbjct: 1283 GRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE 1340
Query: 189 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI-MYGCPKDVKNEDIEWAAKQ 247
G+I IDG + + + LR KI + Q+P L ++ N+ + D E++ WA +
Sbjct: 1341 GEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSD---EEVWWALEL 1397
Query: 248 AYVHEFILSLPCG--YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305
A++ F+ +LP +E + LS GQ+Q + +ARA+LR IL+LDEAT+A+D E++
Sbjct: 1398 AHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD 1457
Query: 306 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLY 365
+ ++ + DC TV+ IAHRL+TI R++V+D G + E G + LL + ++
Sbjct: 1458 NLIQSTIRTQFEDC----TVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIF 1513
Query: 366 AKLVK 370
+ K
Sbjct: 1514 YSMAK 1518
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 2e-38
Identities = 73/236 (30%), Positives = 124/236 (52%), Gaps = 27/236 (11%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
N+SF Y +P IL+ + +I E+ I+G +GSGKST + L L +P G++ +DG
Sbjct: 7 NLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDG 63
Query: 196 FPLTDLDIRWLREKIGFVGQEP---------QLLQMDIKSNI-MYGCPKDVKNEDIEWAA 245
+ L + L +K+ +V Q P +L+ + ++ ++G P E +E A
Sbjct: 64 KDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEAL 123
Query: 246 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305
+ + + VD+ LSGG++QR+ IARA+ ++ ILLLDE TS LD
Sbjct: 124 ELLGLEHLA-------DRPVDE--LSGGERQRVLIARALAQETPILLLDEPTSHLD---I 171
Query: 306 HYVKGVLHALRNDCKTK-RTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 359
+ VL LR+ + K TV+++ H L+ + D ++++ DG+I+ G E+L
Sbjct: 172 AHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 3e-38
Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 52/234 (22%)
Query: 136 NISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 189
N+ ++P V ++ V +I+ E + +VG SG GKST L+L L EP+ G
Sbjct: 9 NLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68
Query: 190 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAY 249
+I +G +T L RE++ L++ K G P++ Y
Sbjct: 69 EILFEGKDITKLSKEERRERV---------LELLEKV----GLPEEFLYR---------Y 106
Query: 250 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309
HE SGGQ+QRI IARA+ +P +++ DE SALD +
Sbjct: 107 PHEL-----------------SGGQRQRIGIARALALNPKLIVADEPVSALDVSVQ---A 146
Query: 310 GVLHALRNDCKTKR--TVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 360
+L+ L+ D + + T + I+H LS ++ + DRI V+ G+I+E+G E+
Sbjct: 147 QILNLLK-DLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199
|
Length = 268 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 6e-38
Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 46/223 (20%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
+ N+SF YP + +L ++ L ++ E +A++G SGSGKST + LL +P G+I
Sbjct: 1 LSINNVSFSYPEQEQ-QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 251
+DG P++DL+ + L I + Q P L +++N+ G
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL--GRR------------------ 98
Query: 252 EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV-KG 310
SGG++QR+A+AR +L+D I+LLDE T LD +E +
Sbjct: 99 ------------------FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSL 140
Query: 311 VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 353
+ L++ +T+I I H L+ I+ +D+I+ +++G+II G
Sbjct: 141 IFEVLKD-----KTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 134 bits (341), Expect = 7e-38
Identities = 71/232 (30%), Positives = 109/232 (46%), Gaps = 43/232 (18%)
Query: 132 VQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 189
+ + SF + S T L + L + E+VAIVG GSGKS+ ++ LL E G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 190 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-------VK----N 238
+ + G I +V QEP + I+ NI++G P D +K
Sbjct: 61 SVSVPG-------------SIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALE 107
Query: 239 EDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEA 296
D+E LP G T + + LSGGQKQRI++ARA+ D I LLD+
Sbjct: 108 PDLE-------------ILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154
Query: 297 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 348
SA+D+ ++ + + +T I++ H+L + D+IVV+D+GR
Sbjct: 155 LSAVDAHVGRHI--FENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 1e-37
Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 22/221 (9%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE- 208
+N V L + E+ I+GLSGSGKST + + RL EP+ G++ IDG + + + LRE
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 209 ---KIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPC 259
KI V Q LL + N+ + G P+ + E A + + + P
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP- 158
Query: 260 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319
D LSGG +QR+ +ARA+ DP ILL+DEA SALD ++ L L+
Sbjct: 159 --------DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA-- 208
Query: 320 KTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 359
+ ++T++ I H L ++ DRI ++ DGR+++VG E+L
Sbjct: 209 ELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 3e-37
Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 47/221 (21%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
N+S Y R +L+ + L+IEA E+V I+G +G+GKST + L L +PS G+I +DG
Sbjct: 4 NLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 196 FPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 254
L L + L KI +V PQ L + +
Sbjct: 61 KDLASLSPKELARKIAYV---PQALELLGL----------------------AHLADRPF 95
Query: 255 LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 314
LSGG++QR+ +ARA+ ++P ILLLDE TS LD + +L
Sbjct: 96 NE-------------LSGGERQRVLLARALAQEPPILLLDEPTSHLDI---AHQIELLEL 139
Query: 315 LRNDCKTK-RTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVG 353
LR + + +TV+++ H L+ + DR++++ DGRI+ G
Sbjct: 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 5e-37
Identities = 79/251 (31%), Positives = 121/251 (48%), Gaps = 45/251 (17%)
Query: 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 192
+ N+S YP+ L V L+I E VA++G SG+GKST + L L EP+ G +
Sbjct: 2 EVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 193 IDGFPLTDL---DIRWLREKIGFVGQEPQLL-QMDIKSNIMYG----------CPKDVKN 238
IDG + L +R LR +IG + Q+ L+ ++ + N++ G
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119
Query: 239 EDIEWA---------AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289
E+ + A +AY D LSGGQ+QR+AIARA+++ P
Sbjct: 120 EEKQRALAALERVGLLDKAY-------QRA--------DQLSGGQQQRVAIARALMQQPK 164
Query: 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTK-RTVIVIAHRLSTIKA-VDRIVVIDDG 347
++L DE ++LD S V+ L+ + + TVIV H++ + DRIV + DG
Sbjct: 165 LILADEPVASLDPASSRQ---VMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDG 221
Query: 348 RIIEVGNHAEL 358
RI+ G AEL
Sbjct: 222 RIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 6e-37
Identities = 74/229 (32%), Positives = 115/229 (50%), Gaps = 35/229 (15%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTD--LD 202
L ++ L I N+V A++G SG GKST + L R+ + G++ DG + D +D
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDVKNEDIEWAAKQAYVHEFILS 256
+ LR ++G V Q+P M I NI YG K +E +E + K+A +
Sbjct: 77 VVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKA-------A 129
Query: 257 LPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 310
L V D L LSGGQ+QR+ IARA+ +P +LLLDE TSALD + ++
Sbjct: 130 LW----DEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEE 185
Query: 311 VLHALRNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAEL 358
++ L K K T++++ H + + DR DG ++E G ++
Sbjct: 186 LIQEL----KKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 3e-36
Identities = 82/236 (34%), Positives = 116/236 (49%), Gaps = 25/236 (10%)
Query: 136 NISFHYPSRPTV-PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 194
N+S Y LN+V L IE E + IVG SGSGKST LL L +PS G I +D
Sbjct: 8 NLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLD 67
Query: 195 GFPLTDLD-IRWLREKIGFVGQEPQLL---QMDIKSNIMYG-CPKDVKNEDIEWAAKQAY 249
G PL + + V Q+P + + + P + A
Sbjct: 68 GKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQ 127
Query: 250 VH---EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306
V F+ P LSGGQ+QRIAIARA++ +P +L+LDE TSALD
Sbjct: 128 VGLPPSFLDRRP---------HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV---- 174
Query: 307 YVKGVLHALRNDCKTKR--TVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 359
V+ + L + K +R T + I+H L+ ++ + DRI V+D+G+I+E+G ELL
Sbjct: 175 SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230
|
Length = 252 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 6e-36
Identities = 75/242 (30%), Positives = 118/242 (48%), Gaps = 29/242 (11%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++ ++ + R +L V L + E++AI+G SGSGKST + L++ L P G++
Sbjct: 1 IELRGLTKSFGGRT---VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 192 YIDGFPLTDL---DIRWLREKIGFVGQEPQLL-QMDIKSNIMY------GCPKDVKNEDI 241
IDG ++ L ++ LR ++G + Q L + + N+ + ++ E +
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 242 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 301
K V L G E L +L SGG K+R+A+ARA+ DP +LL DE T+ LD
Sbjct: 118 --LEKLEAV-----GLR-GAEDLYPAEL-SGGMKKRVALARALALDPELLLYDEPTAGLD 168
Query: 302 SESEHYVKGVLHALRNDCK--TKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 358
GV+ L K T I++ H L T A+ DRI V+ DG+I+ G EL
Sbjct: 169 P----IASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
Query: 359 LH 360
Sbjct: 225 RA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 7e-36
Identities = 70/255 (27%), Positives = 117/255 (45%), Gaps = 58/255 (22%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
++ N+S + ++ + L I+ E V ++G SG GK+T + ++ +PS
Sbjct: 3 KPALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 189 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG--CPKDVKNEDIEWAA 245
G+I +DG +TD+ + IG V Q L M ++ N+ +G K +K +I+
Sbjct: 60 GEILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117
Query: 246 KQA------------YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLL 293
++A H+ LSGGQ+QR+A+ARA++ +P +LLL
Sbjct: 118 EEALELVGLEGFADRKPHQ-----------------LSGGQQQRVALARALVPEPKVLLL 160
Query: 294 DEATSALDSESEHYVKGVLHALRNDC---------KTKRTVIVIAHRLSTIKAV-DRIVV 343
DE SALD++ LR + T + + H A+ DRI V
Sbjct: 161 DEPLSALDAK-----------LREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAV 209
Query: 344 IDDGRIIEVGNHAEL 358
++DGRI +VG E+
Sbjct: 210 MNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 1e-35
Identities = 73/236 (30%), Positives = 115/236 (48%), Gaps = 34/236 (14%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
M ++ +S + V +L + L++E E VAI+G SG GKST + L+ L +P+
Sbjct: 1 MALLEIEGVSKSFG---GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS 57
Query: 189 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKNEDIEWAAK 246
G++ +DG P+T IG+V QE LL + + N+ G + + AK
Sbjct: 58 GEVLLDGRPVTG-----PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAK 112
Query: 247 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306
+ L+ G+E LSGG +QR+AIARA+ P +LLLDE ALD+
Sbjct: 113 -ELLELVGLA---GFEDKYPHQ-LSGGMRQRVAIARALATRPKLLLLDEPFGALDA---- 163
Query: 307 YVKGVLHALRND--CKTKRTVIVIAH------RLSTIKAVDRIVVIDD--GRIIEV 352
+ L +T++TV+++ H L+ DR+VV+ + GRI E
Sbjct: 164 LTREELQDELLRLWEETRKTVLLVTHDVDEAVYLA-----DRVVVLSNRPGRIGEE 214
|
Length = 248 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 4e-35
Identities = 82/234 (35%), Positives = 127/234 (54%), Gaps = 17/234 (7%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++F N+S H+ +L+++ L I+ EVV I+G SGSGKST + + +L E + G +
Sbjct: 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 192 YIDGFPLTD--LDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQA 248
+DG + D +D R +R++ G V Q+ L + N+M+G P V+ E A KQA
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFG-PLRVRGASKEEAEKQA 117
Query: 249 YVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306
E + + G LSGGQ+QR+AIARA+ P ++L DE TSALD E H
Sbjct: 118 --RELLAKV--GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRH 173
Query: 307 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 359
V V+ L + T++++ H + + V R++ ID GRI E G+ L+
Sbjct: 174 EVLKVMQDLAEE---GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224
|
Length = 240 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 4e-35
Identities = 75/228 (32%), Positives = 113/228 (49%), Gaps = 15/228 (6%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
IS + V L+ V LT+ EV A++G +G+GKST + +L +Y P G+I IDG
Sbjct: 13 GISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDG 69
Query: 196 FPLTDLDIRWLREK-IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF 253
P+ R I V QE L+ + + NI G + I+ A + E
Sbjct: 70 KPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAREL 129
Query: 254 I--LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD-SESEHYVKG 310
+ L L +TLV D LS Q+Q + IARA+ D +L+LDE T+AL E+E +
Sbjct: 130 LARLGLDIDPDTLVGD--LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETER-LFD 186
Query: 311 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAE 357
++ L+ +I I+HRL + + DRI V+ DGR++ A
Sbjct: 187 LIRRLKAQ---GVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAA 231
|
Length = 500 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 4e-35
Identities = 84/226 (37%), Positives = 113/226 (50%), Gaps = 32/226 (14%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE- 208
+N L I E+ I+GLSGSGKST V +L RL EP+ GQI+IDG + LRE
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 209 ---KIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPC 259
KIG V Q+ L M I N G P+ + E K + E+ P
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP- 127
Query: 260 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD-----SESEHYVKGVLHA 314
D LSGG +QR+ +ARA+ +P ILL+DEA SALD S + K L A
Sbjct: 128 --------DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKK--LQA 177
Query: 315 LRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELL 359
++T++ I H L I+ DRIV++ G I++VG E+L
Sbjct: 178 -----TLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 9e-35
Identities = 80/239 (33%), Positives = 120/239 (50%), Gaps = 22/239 (9%)
Query: 136 NISFHYPSRPT--------VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 187
N+S Y SR V ++ V + E + +VG SGSGKST +L L PS
Sbjct: 285 NLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS 344
Query: 188 DGQIYIDG--FPLTDLDIRWLREKIGFVGQEPQL-L--QMDIKSNIMYGCPKDVKNEDIE 242
G I DG LT ++R LR +I V Q+P L +M + + +
Sbjct: 345 SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPL---RIHGGGS 401
Query: 243 WAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSAL 300
A ++A V E +L L +D LSGGQ+QR+AIARA+ +P +L+LDE SAL
Sbjct: 402 GAERRARVAE-LLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSAL 460
Query: 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 358
D + V +L L+ + T + I+H L+ ++ + DR+ V+ DGRI+E G ++
Sbjct: 461 DVSVQAQVLNLLKDLQEELGL--TYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKV 517
|
Length = 539 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 9e-34
Identities = 83/255 (32%), Positives = 141/255 (55%), Gaps = 32/255 (12%)
Query: 130 GHVQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
G ++F ++ Y RP +P +L+ + I +E V IVG +G+GKS+ +N L R+ E
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 189 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE----DIEWA 244
G+I IDG ++ + LR+ +G + Q P L ++ N+ D NE D+ +
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNL------DPFNEHNDADLWES 1347
Query: 245 AKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
++A++ + I G + V + + S GQ+Q +++ARA+LR IL+LDEAT+A+D
Sbjct: 1348 LERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDV 1407
Query: 303 ESEHYVKGVLHALRNDCKTKR------TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHA 356
++ ++ KT R T+++IAHRL+TI DRI+V+D GR++E
Sbjct: 1408 RTDALIQ----------KTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPE 1457
Query: 357 ELLHK-GRLYAKLVK 370
LL G ++K+V+
Sbjct: 1458 NLLSNEGSAFSKMVQ 1472
|
Length = 1622 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 1e-33
Identities = 84/242 (34%), Positives = 128/242 (52%), Gaps = 40/242 (16%)
Query: 132 VQFVNISFHYP-SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 190
++ NIS +P T+ LN+V L I A E+ ++G SG+GKST + + L P+ G+
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 191 IYIDGFPLTDLD---IRWLREKIGFVGQEPQLL-QMDIKSNI-----MYGCPKDVKNEDI 241
+ +DG LT L +R R +IG + Q LL + N+ + G PK +I
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPK----AEI 117
Query: 242 EWAAKQAYVHEFILSLPCGYETLVD-DDL-------LSGGQKQRIAIARAILRDPAILLL 293
+ A V E + LV D LSGGQKQR+AIARA+ +P +LL
Sbjct: 118 K-----ARVTELL--------ELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLC 164
Query: 294 DEATSALDSESEHYVKGVLHALRN-DCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIE 351
DEATSALD + + +L L++ + + T+++I H + +K + DR+ VID GR++E
Sbjct: 165 DEATSALDPAT---TRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE 221
Query: 352 VG 353
G
Sbjct: 222 QG 223
|
Length = 343 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (315), Expect = 1e-33
Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 36/226 (15%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTD--L 201
L + L I N+V A++G SG GKST + L R+ + G++ +DG + D +
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81
Query: 202 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK------DVKNEDIEWAAKQAYVHEFIL 255
D+ LR ++G V Q+P M I N+ YG + +E +E + K+A + +
Sbjct: 82 DVVELRRRVGMVFQKPNPFPMSIYDNVAYG-LRLHGIKDKELDEIVESSLKKAALWD--- 137
Query: 256 SLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309
V D L LSGGQ+QR+ IARA+ P +LL+DE TSALD S ++
Sbjct: 138 --------EVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIE 189
Query: 310 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 354
++ L K K T++++ H + V D G ++E G
Sbjct: 190 ELITEL----KKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGP 231
|
Length = 253 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 3e-33
Identities = 81/223 (36%), Positives = 115/223 (51%), Gaps = 22/223 (9%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE- 208
+N L +E E+ I+GLSGSGKST V LL RL EP+ G+I +DG + L LRE
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 209 ---KIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPC 259
KI V Q LL + N+ + G PK + E A + + + P
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162
Query: 260 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319
+ LSGG +QR+ +ARA+ DP ILL+DEA SALD ++ L L+
Sbjct: 163 --------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA-- 212
Query: 320 KTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELLHK 361
K K+T++ I H L ++ DRI ++ DG I++VG E+L
Sbjct: 213 KLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 5e-33
Identities = 73/236 (30%), Positives = 120/236 (50%), Gaps = 20/236 (8%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++F N++ Y +N++ L I E + ++G SGSGK+T + ++ RL EP+ G+I
Sbjct: 1 IEFENVTKRYGGGK--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEW--AAKQA 248
+IDG + + D LR KIG+V Q+ L M ++ NI PK +K W +
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIAL-VPKLLK-----WPKEKIRE 112
Query: 249 YVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306
E + + D LSGGQ+QR+ +ARA+ DP +LL+DE ALD
Sbjct: 113 RADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDP---- 168
Query: 307 YVKGVLHA--LRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELL 359
+ L R + +T++ + H + + DRI ++ +G I++VG E+L
Sbjct: 169 ITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 5e-33
Identities = 81/231 (35%), Positives = 125/231 (54%), Gaps = 12/231 (5%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
N++F Y LN V ++ E ++I+G +GSGKST V L+ L E GQI IDG
Sbjct: 9 NLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDG 68
Query: 196 FPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF 253
LT+ ++ +R KIG V Q P Q + ++ ++ +G ++N+ I + V+E
Sbjct: 69 DLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG----LENKGIPHEEMKERVNE- 123
Query: 254 ILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 311
L L G + + + LSGGQKQR+AIA A+ P I++LDEATS LD E +
Sbjct: 124 ALEL-VGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKT 182
Query: 312 LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 362
+ +R+D + TVI I H L + DR++V+ +G++ EL +G
Sbjct: 183 IKGIRDD--YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231
|
Length = 279 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 8e-33
Identities = 63/225 (28%), Positives = 111/225 (49%), Gaps = 37/225 (16%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
+++ Y P +L V ++ E +AIVG +G+GKST + +L L +P+ G I + G
Sbjct: 4 DLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 196 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI------------MYGCPKDVKNEDIEW 243
PL R++IG+V PQ +D I G + + D
Sbjct: 61 KPLEKE-----RKRIGYV---PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKA- 111
Query: 244 AAKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALD 301
+A E + G L D + LSGGQ+QR+ +ARA+++DP +LLLDE + +D
Sbjct: 112 KVDEA--LERV-----GLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164
Query: 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVID 345
+++ + + LR + T++V+ H L + + DR+++++
Sbjct: 165 PKTQ---EDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLN 206
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 9e-33
Identities = 67/210 (31%), Positives = 114/210 (54%), Gaps = 30/210 (14%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG---FPLTDLDIR- 204
IL+ + LTIE ++ AI+G SGSGKST +N++ L + GQ+Y++G PL
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 205 WLREKIGFVGQEPQLLQMD-IKSNIMYGC-----PKDVKNEDIEWAAKQ----AYVHEFI 254
+ REK+G++ Q L++ + ++ N+ G K K E + A ++ + + I
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI 132
Query: 255 LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 314
YE LSGG++QR+A+ARAIL+ P ++L DE T +LD ++ V +L
Sbjct: 133 ------YE-------LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
Query: 315 LRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 344
L ++ +T+I++ H K DR++ +
Sbjct: 180 LNDE---GKTIIIVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 1e-32
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 24/236 (10%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++F N+S YP L V I E V + G SG+GKST + L+ P+ G+I
Sbjct: 2 IRFENVSKAYPGGR--EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 192 YIDGFPLTDL---DIRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIE 242
++G L+ L +I +LR +IG V Q+ +LL + N+ G P +
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 243 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
+ +LP LSGG++QR+AIARAI+ PA+LL DE T LD
Sbjct: 120 EVLDLVGLKHKARALP---------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDP 170
Query: 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD-RIVVIDDGRIIEVGNHAE 357
+ ++ + TV++ H L + + R++ ++DGR++ +
Sbjct: 171 D---LSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 1e-32
Identities = 67/222 (30%), Positives = 116/222 (52%), Gaps = 23/222 (10%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++ N++ Y +RP +L + L++E E+ A++G +G+GKST + +L L +PS G+I
Sbjct: 5 IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD------IKSNIMYGCPKDVKNEDIEWAA 245
I G P+ R +IG+V PQ +D +K ++ G
Sbjct: 62 KIFGKPVRKRR---KRLRIGYV---PQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKK 115
Query: 246 KQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303
+ V E + + G E L D + LSGGQKQR+ +ARA+ ++P +LLLDE + +D
Sbjct: 116 DKEKVDEALERV--GMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA 173
Query: 304 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVI 344
+ + +L LR + +TV+++ H L + A DR++ +
Sbjct: 174 GQKEIYDLLKELRQE---GKTVLMVTHDLGLVMAYFDRVICL 212
|
Length = 254 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 1e-32
Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 23/227 (10%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLR 207
L++V + IE E V ++G +GSGKST + L L +P+ G+I IDG +TD + + +R
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 208 EKIGFVGQEP--QLLQMDIKSNIMYGCPKD--VKNEDIEWAAKQAYVHEFILSLPCGYET 263
+K+G V Q P QL + I+ +I +G P + + E+IE K+A I+ L YE
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFG-PINLGLSEEEIENRVKRAMN---IVGLD--YED 136
Query: 264 LVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT 321
D LSGGQK+R+AIA + +P IL+LDE T+ LD + + + L +
Sbjct: 137 YKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHK--EY 194
Query: 322 KRTVIVIAHRLSTI-KAVDRIVVIDDGRII------EVGNHAELLHK 361
T+I+++H + + K DRI+V++ G+ EV E L
Sbjct: 195 NMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLES 241
|
Length = 287 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-32
Identities = 85/222 (38%), Positives = 120/222 (54%), Gaps = 18/222 (8%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-----YIDG-FPLTDLD 202
+L+ + L ++ EVVAI+G SGSGK+T + + L +P G I ID L+
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 203 --IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLP- 258
IR LR+ +GFV Q L + NI+ G P VK E E A +A E + +
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-PVIVKGEPKEEATARA--RELLAKVGL 134
Query: 259 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318
G ET LSGGQ+QR+AIARA+ P ++L DE TSALD E V VL+ +R
Sbjct: 135 AGKETSYPRR-LSGGQQQRVAIARALAMRPEVILFDEPTSALDPE---LVGEVLNTIRQL 190
Query: 319 CKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 359
+ KRT++++ H +S + V DR + +D GRI+E G L
Sbjct: 191 AQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232
|
Length = 250 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 6e-32
Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 62/221 (28%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++ I+ + V L+ V L++ EV A++G +G+GKST + +L LY+P G+I
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 251
+DG +++ F P+D + I A V+
Sbjct: 58 LVDG------------KEVSFAS------------------PRDARRAGI------AMVY 81
Query: 252 EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL-DSESEHYVKG 310
+ LS G++Q + IARA+ R+ +L+LDE T+AL +E E
Sbjct: 82 Q-----------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVER---- 120
Query: 311 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 350
+ +R VI I+HRL + + DR+ V+ DGR++
Sbjct: 121 LFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 120 bits (301), Expect = 1e-31
Identities = 78/247 (31%), Positives = 134/247 (54%), Gaps = 12/247 (4%)
Query: 128 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 187
L G ++ ++ Y + P+L HV I+ + V I G +GSGKS+ R+ +
Sbjct: 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF 74
Query: 188 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 247
DG+I IDG ++ L + LR ++ + Q+P L I+ N+ P+ +D W A +
Sbjct: 75 DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLD---PECKCTDDRLWEALE 131
Query: 248 -AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304
A + + SLP G + +V + + S GQ+Q +ARA +R +IL++DEAT+++D +
Sbjct: 132 IAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT 191
Query: 305 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL-HKGR 363
E+ ++ V+ D RTV+ IAHR+STI D ++V+ G ++E LL +
Sbjct: 192 ENILQKVVMTAFAD----RTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDG 247
Query: 364 LYAKLVK 370
++A LV+
Sbjct: 248 VFASLVR 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-31
Identities = 70/261 (26%), Positives = 112/261 (42%), Gaps = 50/261 (19%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL----YEPS 187
V+ + + F VP + V +E E++ IVG SGSGKST L+ L +
Sbjct: 8 VENLTVEFATDGGR-VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRIT 66
Query: 188 DGQIYIDGFPLTDLDIRWLRE----KIGFVGQEP-QLL--QMDIKSNI-------MYGCP 233
G++ +DG L L R +R+ +I + Q+P L M I I G
Sbjct: 67 SGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSR 126
Query: 234 KDVKNEDIEW---------AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284
+ + +E + Y H+ LSGG +QR+ IA A+
Sbjct: 127 AEARKRAVELLEQVGLPDPERRDRYPHQ-----------------LSGGMRQRVMIAMAL 169
Query: 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRT-VIVIAHRLSTIKAV-DRIV 342
P +L+ DE T+ALD ++ +L L++ + V+ I H L + + DR+V
Sbjct: 170 ALKPKLLIADEPTTALDVTTQ---AQILDLLKDLQRELGMAVLFITHDLGVVAELADRVV 226
Query: 343 VIDDGRIIEVGNHAELLHKGR 363
V+ G I+E G E+L +
Sbjct: 227 VMYKGEIVETGPTEEILSNPQ 247
|
Length = 539 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-31
Identities = 78/229 (34%), Positives = 120/229 (52%), Gaps = 18/229 (7%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
N+ + + L+ + L I++ E+VA++G SG+GKST + ++ L P G+I ++G
Sbjct: 7 NVKKRFGAFGA---LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNG 63
Query: 196 FPLTDLDIRWLRE-KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF 253
L D+ +R+ K+GFV Q L M + NI +G V+ E A +A V E
Sbjct: 64 RVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLK--VRKERPSEAEIRARVEE- 120
Query: 254 ILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 311
+L L E L D LSGGQ+QR+A+ARA+ +P +LLLDE ALD K +
Sbjct: 121 LLRL-VQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD---AKVRKEL 176
Query: 312 LHALRNDC--KTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAE 357
LR + T + + H ++ DR+VV++ GRI +VG E
Sbjct: 177 RRWLR-KLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224
|
Length = 345 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 3e-31
Identities = 75/227 (33%), Positives = 111/227 (48%), Gaps = 24/227 (10%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++F N+S YP V L+ V L I E + + G SG+GK+T + LL PS GQ+
Sbjct: 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 192 YIDGFPLTDL---DIRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIE 242
I G + L + LR +IG V Q+ +LL + N+ G + +
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 243 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
A +Q + + P + LSGG++QR+AIARAI+ P +LL DE T LD
Sbjct: 120 AALRQVGLEHKADAFP---------EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDP 170
Query: 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD-RIVVIDDGR 348
+ +L L+ K TVIV H LS + V R++++DDGR
Sbjct: 171 ---DLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 6e-31
Identities = 61/210 (29%), Positives = 111/210 (52%), Gaps = 12/210 (5%)
Query: 146 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 205
ILN++ L++ A E +AI G SG GKST + ++ L P+ G + +G ++ L
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74
Query: 206 LREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 265
R+++ + Q P L ++ N+++ P ++N + AA + F L ++++
Sbjct: 75 YRQQVSYCAQTPALFGDTVEDNLIF--PWQIRNRRPDRAAALDLLARFALP-----DSIL 127
Query: 266 DDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 323
++ LSGG+KQRIA+ R + P ILLLDE TSALD ++ ++ ++H +
Sbjct: 128 TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVRE--QNV 185
Query: 324 TVIVIAH-RLSTIKAVDRIVVIDDGRIIEV 352
V+ I H + I+ D+++ + G E+
Sbjct: 186 AVLWITHDKDQAIRHADKVITLQPGHAGEM 215
|
Length = 223 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 7e-31
Identities = 77/251 (30%), Positives = 120/251 (47%), Gaps = 43/251 (17%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++ N+S YP L V L I E+VAI+G SG+GKST + L L +P+ G+I
Sbjct: 4 IEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 192 YIDGFPLTDL---DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQ 247
+G +T L ++R LR IG + Q+ L+ + + N++ G +
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLG--------------RL 107
Query: 248 AYVHEF--ILSLPCGYETLVDDDL----------------LSGGQKQRIAIARAILRDPA 289
Y + + L + D LSGGQ+QR+AIARA+++ P
Sbjct: 108 GYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPK 167
Query: 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-TVIVIAHRLSTIKA-VDRIVVIDDG 347
I+L DE ++LD ES V+ L++ + TVIV H++ K DRI+ + G
Sbjct: 168 IILADEPVASLDPESAKK---VMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAG 224
Query: 348 RIIEVGNHAEL 358
RI+ G +EL
Sbjct: 225 RIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 8e-31
Identities = 73/212 (34%), Positives = 118/212 (55%), Gaps = 12/212 (5%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209
L+ V L + +VA++G SGSGKST + ++ L +P G+I ++G T + R K
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--DRK 73
Query: 210 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD- 267
IGFV Q L + + ++ NI +G ++ A +A V E +L L E L D
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFG----LEIRKHPKAKIKARVEE-LLEL-VQLEGLGDRY 127
Query: 268 -DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 326
+ LSGGQ+QR+A+ARA+ +P +LLLDE ALD++ ++ L L ++ TV
Sbjct: 128 PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVT-TVF 186
Query: 327 VIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 358
V + ++ DRIVV+ +G+I ++G+ E+
Sbjct: 187 VTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 1e-30
Identities = 80/252 (31%), Positives = 122/252 (48%), Gaps = 45/252 (17%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++ N+S YP+ L ++ L I E VAI+G SG+GKST + + RL EPS G I
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 192 YIDGFPLTDL---DIRWLREKIGFVGQEPQLL-QMDIKSNIMYG----------CPKDVK 237
++G +T L +R LR +IG + Q L+ ++ + N+++G
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 238 NEDIEWA---------AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288
ED E A A +AY D LSGGQ+QR+AIARA+ + P
Sbjct: 120 EEDKERALSALERVGLADKAYQRA---------------DQLSGGQQQRVAIARALAQQP 164
Query: 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-TVIVIAHRLSTIKA-VDRIVVIDD 346
++L DE ++LD ++ V+ L+ K TVI+ H++ K DRIV +
Sbjct: 165 DLILADEPIASLDPKTSKQ---VMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKA 221
Query: 347 GRIIEVGNHAEL 358
G I+ G +EL
Sbjct: 222 GEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 1e-30
Identities = 68/259 (26%), Positives = 108/259 (41%), Gaps = 55/259 (21%)
Query: 135 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDG 189
+++SF + V ++ V ++ E++ IVG SGSGKS ++ L G
Sbjct: 7 LSVSFPTDAG-VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGG 65
Query: 190 QIYIDGFPLTDLD------IRWLREKIGFVGQEPQL-LQ--MDIKSNIMYGCPKDVKNED 240
+I DG L L IR ++I + Q+P L M I I K
Sbjct: 66 EILFDGKDLLSLSEKELRKIRG--KEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLS 123
Query: 241 IEWAAKQA------------------YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282
+ A ++A Y HE LSGG +QR+ IA
Sbjct: 124 KKEAKERAIELLELVGIPDPERRLKSYPHE-----------------LSGGMRQRVMIAM 166
Query: 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRI 341
A+ +P +L+ DE T+ALD + + +L L+ + +I+I H L + + DR+
Sbjct: 167 ALALNPKLLIADEPTTALDVTVQAQILDLLKELQR--EKGTALILITHDLGVVAEIADRV 224
Query: 342 VVIDDGRIIEVGNHAELLH 360
V+ GRI+E G E+
Sbjct: 225 AVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 116 bits (291), Expect = 1e-30
Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 25/229 (10%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
V+ I F Y +P H LT E+ AIVG SGSGKST +NL+ P G++
Sbjct: 1 VRLDKIRFSYGEQPM-----HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP-----KDVKNEDIEWAA 245
I+G +T + + QE L + ++ N+ G + IE A
Sbjct: 56 LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 246 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305
+ + LP LSGG++QR+A+AR ++RD +LLLDE +ALD
Sbjct: 114 ARVGLAGLEKRLP---------GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALR 164
Query: 306 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
+ ++ L +TK TV+++ H+ K + R+V +D+GRI G
Sbjct: 165 AEMLDLVLDLHA--ETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-30
Identities = 69/228 (30%), Positives = 111/228 (48%), Gaps = 47/228 (20%)
Query: 134 FVNISF---HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL--LRLYEPSD 188
F N++ PS+ +L +V + E+ AI+G SG+GKST +N L R
Sbjct: 6 FRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVS 65
Query: 189 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQ 247
G++ I+G PL D R R+ IG+V Q+ L + ++ +M+ AAK
Sbjct: 66 GEVLINGRPL---DKRSFRKIIGYVPQDDILHPTLTVRETLMF-------------AAK- 108
Query: 248 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 307
L LSGG+++R++IA ++ +P++L LDE TS LDS S
Sbjct: 109 ---------LRG----------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQ 149
Query: 308 VKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDDGRIIEVG 353
V+ LR T RT+I H+ S+ + D+++++ GR+I G
Sbjct: 150 ---VMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-30
Identities = 70/216 (32%), Positives = 114/216 (52%), Gaps = 14/216 (6%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209
L +V L +E + I+G +GSGKS + + +P G+I ++G +T+L +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRD 72
Query: 210 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 268
I +V Q L M + NI YG K K + E K V E L G + L++
Sbjct: 73 ISYVPQNYALFPHMTVYKNIAYGL-KKRKVDKKEIERK---VLEIAEML--GIDHLLNRK 126
Query: 269 --LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 326
LSGG++QR+AIARA++ +P ILLLDE SALD ++ ++ L +R + TV+
Sbjct: 127 PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV--TVL 184
Query: 327 VIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 361
+ H A+ D++ ++ +G++I+VG E+ K
Sbjct: 185 HVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 3e-30
Identities = 75/231 (32%), Positives = 120/231 (51%), Gaps = 27/231 (11%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
V+ N++ + + + LN L I E V ++G SG GK+T + ++ L EP+ G+I
Sbjct: 1 VELENVTKRFGNVTALDDLN---LDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAA 245
YI G +TDL + I V Q L M + NI +G PKD +E + A
Sbjct: 58 YIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 246 KQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303
+ +L + E L+D LSGGQ+QR+A+ RAI+R+P + L+DE S LD++
Sbjct: 116 E-------LLQI----EHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
Query: 304 SEHYVKGVLHALRNDCKTKRTVIVIAH-RLSTIKAVDRIVVIDDGRIIEVG 353
++ L L+ T T I + H ++ + DRI V++DG+I ++G
Sbjct: 165 LRVQMRAELKRLQQRLGT--TTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 4e-30
Identities = 68/228 (29%), Positives = 117/228 (51%), Gaps = 24/228 (10%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++F+N++ YP L+ + ++I A E V +VG SG+GKST + L+ + P+ G I
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 192 YIDGFPLTDLD---IRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIE 242
++G ++DL I +LR KIG V Q+ +LL ++ N+ + G P + +
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 243 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
A + + +LP LSGG++QR+AIARAI+ P IL+ DE T LD
Sbjct: 119 AALELVGLSHKHRALPAE---------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDP 169
Query: 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD-RIVVIDDGRI 349
+ +++ L+ K TV+V H + R++ ++ G++
Sbjct: 170 D---TTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 6e-30
Identities = 68/201 (33%), Positives = 105/201 (52%), Gaps = 18/201 (8%)
Query: 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRWLREKIGFVGQE 216
EV I G SG+GKST + + L +P G I ++G L D +++ + KIG V Q+
Sbjct: 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQ 83
Query: 217 PQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGG 273
L ++++ N+ +G + ED + V E + L G + L++ LSGG
Sbjct: 84 YALFPHLNVRENLAFGLKRKRNRED------RISVDELLDLL--GLDHLLNRYPAQLSGG 135
Query: 274 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 333
+KQR+A+ARA+ P +LLLDE SALD + L ++ + VI + H LS
Sbjct: 136 EKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI--PVIFVTHDLS 193
Query: 334 TI-KAVDRIVVIDDGRIIEVG 353
DRIVV++DGR+ +G
Sbjct: 194 EAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 1e-29
Identities = 74/213 (34%), Positives = 109/213 (51%), Gaps = 22/213 (10%)
Query: 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 214
LT+ A E+VAI+G SG+GKST +NL+ P+ G+I I+G T + +
Sbjct: 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSMLF 77
Query: 215 QEPQLL-QMDIKSNIMYGCPKDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDDD 268
QE L + + NI G +K E +E AA Q + F+ LP
Sbjct: 78 QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP---------G 128
Query: 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC-KTKRTVIV 327
LSGGQ+QR+A+AR ++R+ ILLLDE SALD +L + C + K T+++
Sbjct: 129 ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA---EMLALVSQLCDERKMTLLM 185
Query: 328 IAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 359
+ H + DR+V +D+GRI G+ ELL
Sbjct: 186 VTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 1e-29
Identities = 76/225 (33%), Positives = 109/225 (48%), Gaps = 21/225 (9%)
Query: 136 NISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 194
+I YPS V +L + L I A E+VAIVG SGSGKST +N+L L +P+ G +
Sbjct: 9 DIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVA 68
Query: 195 GFPLTDLD----IRWLREKIGFVGQEPQLL-QMDIKSNI----MYGCPKDVKNEDIEWAA 245
G + LD + RE GF+ Q LL + N+ +Y +E
Sbjct: 69 GQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA--------GLERKQ 120
Query: 246 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305
+ E + L LSGGQ+QR++IARA++ ++L DE T ALDS S
Sbjct: 121 RLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180
Query: 306 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 350
V +LH LR+ TVI++ H +R++ I DG I+
Sbjct: 181 EEVMAILHQLRDR---GHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-29
Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 19/238 (7%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
+ F N+SF Y S + L V I + +IVG +GSGKST L++ + + G+I
Sbjct: 8 IVFKNVSFQYQSDASF-TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYG-----CPKDVKNEDIEWA 244
+ + +TD + LR+ IG V Q P Q + +K ++ +G P D + + A
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA 126
Query: 245 AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304
KQ + E P + LSGGQKQR+AIA + +P++++LDEATS LD ++
Sbjct: 127 LKQVDMLERADYEP---------NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDA 177
Query: 305 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 362
+ ++ ++++ T+I I H LS D ++V++ G + + G E+
Sbjct: 178 RQNLLDLVRKVKSEHNI--TIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
|
Length = 269 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-29
Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 11/230 (4%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++ N+S + L+ V L I + E+VA++G SGSGK+T + L+ L P G I
Sbjct: 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYV 250
G TD+ ++ +GFV Q L + M + N+ +G ++E A +A V
Sbjct: 60 LFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV 117
Query: 251 HEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 308
HE +L L + L D LSGGQ+QR+A+ARA+ +P +LLLDE ALD++ +
Sbjct: 118 HE-LLKL-VQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL 175
Query: 309 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 358
+ L L ++ TV V + ++ DR+VV++ GRI +VG E+
Sbjct: 176 RRWLRRLHDELHVT-TVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 6e-29
Identities = 88/303 (29%), Positives = 156/303 (51%), Gaps = 24/303 (7%)
Query: 82 LIYATWRMVDNLSSLLQ-------SIGATEKVFQLIDLLPSNQFLSEG---VKLQRLMGH 131
L+ T + LS +L+ S+ + E+V IDL + E V G
Sbjct: 1175 LLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGS 1234
Query: 132 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 190
++F ++ Y RP +P +L+ + + +E V +VG +G+GKS+ +N L R+ E G+
Sbjct: 1235 IKFEDVHLRY--RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGR 1292
Query: 191 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA-KQAY 249
I ID + + LR + + Q P L ++ NI P N+ W A ++A+
Sbjct: 1293 IMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNID---PFSEHNDADLWEALERAH 1349
Query: 250 VHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 307
+ + I P G + V + + S GQ+Q +++ARA+LR IL+LDEAT+++D ++
Sbjct: 1350 IKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSL 1409
Query: 308 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYA 366
++ + C T++VIAHRL+TI D+I+V+ G+++E + ELL + +
Sbjct: 1410 IQRTIREEFKSC----TMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFF 1465
Query: 367 KLV 369
++V
Sbjct: 1466 RMV 1468
|
Length = 1495 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-28
Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 37/233 (15%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS---DGQIYIDGFPL--TDLD 202
L + L IE N+V A++G SG GKSTF+ L R+ + PS +G++ +DG + +D+D
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-------KDVKNEDIEWAAKQAYVHEFIL 255
+ LR+++G V Q+P M I N+ YG P K +E +E + K A + +
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYG-PRTHGIKDKKKLDEIVEKSLKGAALWD--- 134
Query: 256 SLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309
V D L LSGGQ+QR+ IARA+ +P +LL+DE TSALD S ++
Sbjct: 135 --------EVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIE 186
Query: 310 GVLHALRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELLHK 361
L + K T++++ H + + D+ +G I+E G+ +L
Sbjct: 187 ----ELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235
|
Length = 250 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-28
Identities = 73/244 (29%), Positives = 122/244 (50%), Gaps = 34/244 (13%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++ ++ + R IL+ V L + E++AI+G SGSGKST + L+L L P G+I
Sbjct: 9 IEVRGVTKSFGDRV---ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 192 YIDGFPLTDL---DIRWLREKIGFVGQEPQLL-QMDIKSNIMY------GCPKDVKNEDI 241
IDG + L ++ +R+++G + Q+ L + + N+ + P+ + E +
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 242 EWAAKQAYVHEFILSL-PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 300
+ + L P E LSGG ++R+A+ARAI DP +L LDE TS L
Sbjct: 126 LMKLELVGLRGAAADLYP--SE-------LSGGMRKRVALARAIALDPELLFLDEPTSGL 176
Query: 301 D----SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNH 355
D + ++ + AL TVI++ H L ++ + DR+ V+ DG++I G
Sbjct: 177 DPISAGVIDELIRELNDALGL------TVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230
Query: 356 AELL 359
ELL
Sbjct: 231 EELL 234
|
Length = 263 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-28
Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 10/127 (7%)
Query: 174 STFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLREKIGFVGQEPQL-LQMDIKSNIMYG 231
ST + L+ L +P+ G I +DG T L + LR++IG V Q+PQL ++ ++ N+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 232 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 291
+ E A ++ + +F+ P G LSGGQKQR+AIARA+L+ P +L
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVGT--------LSGGQKQRVAIARALLKKPKLL 112
Query: 292 LLDEATS 298
LLDE T+
Sbjct: 113 LLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-28
Identities = 86/264 (32%), Positives = 126/264 (47%), Gaps = 46/264 (17%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P--- 186
+Q N++F+Y L ++ L I N+V A +G SG GKST + R+YE P
Sbjct: 14 IQVRNLNFYYGKFHA---LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQR 70
Query: 187 SDGQIYIDGFPL--TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDVKN 238
++G+I +DG + DI LR K+G V Q+P M I NI +G + +
Sbjct: 71 AEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMD 130
Query: 239 EDIEWAAKQAYV-HEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAIL 291
E +EWA +A + +E V D L LSGGQ+QR+ IAR I P +L
Sbjct: 131 ERVEWALTKAALWNE------------VKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVL 178
Query: 292 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 350
LLDE SALD S ++ ++ L K TV+++ H + D + G +I
Sbjct: 179 LLDEPCSALDPISTGRIEELITEL----KQDYTVVIVTHNMQQAARCSDYTAFMYLGELI 234
Query: 351 EVGNHAELLHKGRLYAKLVKRQTE 374
E GN ++ K K+QTE
Sbjct: 235 EFGNTD------TIFTKPAKKQTE 252
|
Length = 260 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 3e-28
Identities = 66/234 (28%), Positives = 109/234 (46%), Gaps = 23/234 (9%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++ N+S Y L+ V L I+ E ++G SG GK+T + L+ P+ G+I
Sbjct: 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIEWAA 245
+DG +T+L + + V Q L + + NI +G PK E + A
Sbjct: 58 LLDGKDITNLPPH--KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 246 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305
+ + P LSGGQ+QR+AIARA++ +P +LLLDE ALD +
Sbjct: 116 DLVQLEGYANRKP---------SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR 166
Query: 306 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 358
++ L L+ + T + + H + DRI V++ G+I ++G E+
Sbjct: 167 KDMQLELKRLQKELGI--TFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 7e-28
Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 11/210 (5%)
Query: 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---- 202
+ IL V L ++ E VAIVG SGSGKST + +L L +PS G++ + G PL LD
Sbjct: 23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR 82
Query: 203 IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 261
+GFV Q L+ + N+ P +++ E + A + ++ G
Sbjct: 83 AALRARHVGFVFQSFHLIPNLTALENVA--LPLELRGESSADSRAGA--KALLEAVGLGK 138
Query: 262 ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT 321
LSGG++QR+A+ARA P +L DE T LD + + +L AL + T
Sbjct: 139 RLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGT 198
Query: 322 KRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 351
T++++ H DR + + GR++E
Sbjct: 199 --TLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 8e-28
Identities = 79/217 (36%), Positives = 120/217 (55%), Gaps = 22/217 (10%)
Query: 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLDIRWL-REKI 210
L IE E+ I+GLSGSGKST V LL RL EP+ GQ+ IDG ++D ++R + R+KI
Sbjct: 49 LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI 108
Query: 211 GFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 264
V Q L+ M + N + G + + E A +Q + + S P
Sbjct: 109 AMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP------ 162
Query: 265 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRT 324
D LSGG +QR+ +ARA+ +P ILL+DEA SALD ++ L L+ K +RT
Sbjct: 163 ---DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQ--AKHQRT 217
Query: 325 VIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELLH 360
++ I+H L ++ DRI ++ +G +++VG E+L+
Sbjct: 218 IVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILN 254
|
Length = 400 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (275), Expect = 8e-28
Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 8/226 (3%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
N+ F Y V LN V +I E V+I+G +GSGKST L+ L+E +G++ IDG
Sbjct: 9 NLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDG 68
Query: 196 FPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF 253
LT ++ LR KIG V Q P Q + ++ ++ +G ++N+ I V E
Sbjct: 69 ELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFG----MENQGIPREEMIKRVDEA 124
Query: 254 ILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 313
+L++ + LSGGQKQR+A+A I P I++LDE+TS LD + V+H
Sbjct: 125 LLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIH 184
Query: 314 ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 359
++ K + TV+ I H L + DRI+V+ G II+ +EL
Sbjct: 185 EIKE--KYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
|
Length = 277 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 9e-28
Identities = 75/231 (32%), Positives = 115/231 (49%), Gaps = 23/231 (9%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
+SF Y +R L+ V T+ VA++G +G+GKST +LL RLY +GQI + G
Sbjct: 6 GLSFRYGARRA---LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAG 62
Query: 196 FPLTDLDIRWLREKIGFVGQEPQL-LQMDIKSNIMY-----GCPKDVKNEDIEWAAKQAY 249
L L ++G V Q+P L L + ++ N+ Y G + I +
Sbjct: 63 HDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLAR-- 119
Query: 250 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309
L L + V + L+GG ++R+ IARA+L PA+LLLDE T LD S +
Sbjct: 120 -----LGLAERADDKVRE--LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIT 172
Query: 310 GVLHALRNDCKTKR-TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 359
+ AL + + +V+ H + I+A DR+VV+ GR++ G AEL
Sbjct: 173 AHVRAL---ARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELR 220
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-27
Identities = 67/221 (30%), Positives = 111/221 (50%), Gaps = 20/221 (9%)
Query: 153 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRWLRE 208
T+ V AI G SGSGK+T + L+ L P +G+I ++G L D + + +
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 209 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 266
+IG+V QE +L + ++ N+ YG + I + ++ L G L+
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFER--------VIEL-LGIGHLLG 126
Query: 267 D--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRT 324
LSGG+KQR+AI RA+L P +LL+DE +ALD ++ + L L +
Sbjct: 127 RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAE--FGIP 184
Query: 325 VIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKGRL 364
++ ++H L + + DR+VV++DGR+ G AE+ L
Sbjct: 185 ILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDL 225
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-27
Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 21/218 (9%)
Query: 145 PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 204
P V + V L+++ E+ A++G +G+GKST + +L LY+P G+I +DG +R
Sbjct: 15 PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKE-----VR 69
Query: 205 W------LREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI--L 255
+R IG V Q L+ + + NI+ G K I+ +A + E
Sbjct: 70 IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPS-KGGLIDRRQARARIKELSERY 128
Query: 256 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 315
LP + V D LS G++QR+ I +A+ R +L+LDE T+ L + E + L
Sbjct: 129 GLPVDPDAKVAD--LSVGEQQRVEILKALYRGARLLILDEPTAVL-TPQE--ADELFEIL 183
Query: 316 RNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEV 352
R +T+I I H+L + A+ DR+ V+ G+++
Sbjct: 184 RRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT 221
|
Length = 501 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 2e-27
Identities = 68/219 (31%), Positives = 109/219 (49%), Gaps = 21/219 (9%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
NISF Y IL+ + L + A E++A+ G +G+GK+T +L L + S G I ++G
Sbjct: 4 NISFSYKKGTE--ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 196 FPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHE 252
+ + R+ IG+V Q+ QL ++ ++ G D NE E K ++
Sbjct: 62 ---KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA 118
Query: 253 FILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 312
P LSGGQKQR+AIA A+L +L+ DE TS LD ++ ++ V
Sbjct: 119 LKERHPLS---------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKN---MERVG 166
Query: 313 HALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRII 350
+R + VIVI H + K DR++++ +G I+
Sbjct: 167 ELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-27
Identities = 87/257 (33%), Positives = 122/257 (47%), Gaps = 31/257 (12%)
Query: 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPS- 187
H N++ Y S+ IL + L I EV A +G SG GKSTF+ R+ + P+
Sbjct: 5 HASVKNLNLWYGSKQ---ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNC 61
Query: 188 --DGQIYIDGFPL--TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK---DVKNED 240
G++ IDG + D ++ LR K+G V Q+P I N+ YG PK KN+
Sbjct: 62 KVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYG-PKLHGLAKNKK 120
Query: 241 IEWAAKQAYVHEFILSLPCGYETLVD---DDL--LSGGQKQRIAIARAILRDPAILLLDE 295
K + E L+ +E L D D LSGGQ+QR+ IARAI P +LL+DE
Sbjct: 121 -----KLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDE 175
Query: 296 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 354
SALD V+ L + K T+IV+ H + K V DR+ GRI+E
Sbjct: 176 PCSALDP----VATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231
Query: 355 HAELLHKGRLYAKLVKR 371
E+ + + KR
Sbjct: 232 TQEIFKNPQ--SSKTKR 246
|
Length = 251 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 4e-27
Identities = 74/247 (29%), Positives = 126/247 (51%), Gaps = 32/247 (12%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS-- 187
++ N S +Y + V +V + I N++ AI+G SG GK+T + + R+ + P
Sbjct: 4 IEIENFSAYYGEKKAV---KNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 188 -DGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP------KDVKN 238
+G+IY G + D LD+ R+K+G V Q+P M I N+ +G K +
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 239 EDIEWAAKQAYVHEFI---LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDE 295
+E + K+A + + + L+ P G LSGGQ+QR+ IARA+ +P ++LLDE
Sbjct: 121 RIVEESLKKAALWDEVKSELNKP-GTR-------LSGGQQQRLCIARALAVEPEVILLDE 172
Query: 296 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGN 354
TSALD + ++ +L L T++++ H + I+ D I + G +IE G
Sbjct: 173 PTSALDPIATQRIEKLLEELSE----NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGP 228
Query: 355 HAELLHK 361
E++ +
Sbjct: 229 TREIVER 235
|
Length = 250 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 5e-27
Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 41/232 (17%)
Query: 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL---DI 203
IL V LT+ E+VA++G +G+GK+T + ++ L P G I DG +T L +
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHER 72
Query: 204 RWLREKIGFVGQEPQLL-QMDIKSNIM---YGCPKDVKNEDIEWAAKQAYVHEFILSL-- 257
R IG+V + ++ ++ ++ N++ Y + + +E + L
Sbjct: 73 --ARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLER----------VYELFP 120
Query: 258 --------PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309
G LSGG++Q +AIARA++ P +LLLDE + L + V+
Sbjct: 121 RLKERRKQLAG--------TLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVE 169
Query: 310 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 360
+ A+R T++++ + DR V++ GR++ G AELL
Sbjct: 170 EIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 5e-27
Identities = 77/246 (31%), Positives = 119/246 (48%), Gaps = 43/246 (17%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTD--LD 202
L + + I N V A +G SG GKST + R+ + D G+I +DG + D +D
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100
Query: 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDVKNEDIEWAAKQAYV-HEFIL 255
+ LR ++G V Q P I N++YG + V +E +E + + A + E
Sbjct: 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDE--- 157
Query: 256 SLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309
V D L LSGGQ+QR+ IARAI +P +LLLDE TSALD S ++
Sbjct: 158 ---------VKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIE 208
Query: 310 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYAKL 368
++ L K+K T++++ H + V D + G+++E G+ L+
Sbjct: 209 ELITEL----KSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGD------TDTLFTSP 258
Query: 369 VKRQTE 374
K+QTE
Sbjct: 259 AKKQTE 264
|
Length = 272 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 5e-27
Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 18/216 (8%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--DIRWLR 207
L+ V ++ E+ ++G +G+GK+T NL+ P+ G + DG +T L R
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIA-R 74
Query: 208 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQ------AYVHEFILSLPCG 260
IG Q P+L + + N+M + + A++ E +L G
Sbjct: 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEE-LLER-VG 132
Query: 261 YETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318
L D LS GQ++R+ IARA+ DP +LLLDE + L+ E + ++ LR
Sbjct: 133 LADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER 192
Query: 319 CKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
TV+++ H + + ++ DR+ V+D GR+I G
Sbjct: 193 ---GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEG 225
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 5e-27
Identities = 63/230 (27%), Positives = 112/230 (48%), Gaps = 18/230 (7%)
Query: 140 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 199
Y V + V E E+ ++G +G+GK+T + ++ L P G++ IDG
Sbjct: 10 SYG--SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTV 67
Query: 200 DLDIRWLREKIGFV-GQEPQLLQMDIKSNIMY-GCPKDVKNEDIEWAAKQAYVHEFILSL 257
D ++R KIG + G+ ++ + N+ Y + ++I+ A + E L
Sbjct: 68 R-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIK-----ARIAELSKRL 121
Query: 258 PCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 315
+D + S G KQ++AIARA++ DP+IL+LDE TS LD + + L
Sbjct: 122 --QLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL 179
Query: 316 RNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRL 364
+N+ R VI +H + ++A+ DR++V+ G ++ G+ L + L
Sbjct: 180 KNE---GRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVL 226
|
Length = 245 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-26
Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 21/232 (9%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
M + F + ++ V T++ EV ++G +G+GK+T + +L L EP
Sbjct: 1 MITADALTKRFRDVKKTVQ-AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA 59
Query: 189 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNI-----MYGCPKDVKNEDIE 242
G +DGF + R ++GFV L ++ + N+ +YG D +E
Sbjct: 60 GFATVDGFD-VVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLE 118
Query: 243 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
A + + E + + V S G +Q++AIARA++ DP +LLLDE T+ LD
Sbjct: 119 ELADRLGMEELL-------DRRVGG--FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDV 169
Query: 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
+ ++ + LR K ++ H + ++ + DR+VV+ GR++ G
Sbjct: 170 MATRALREFIRQLRALGK---CILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-26
Identities = 58/234 (24%), Positives = 112/234 (47%), Gaps = 35/234 (14%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
+Q N++ Y + L+ V LT+ + ++G +G+GK+T + +L L PS G I
Sbjct: 1 LQLENLTKRYGKKR---ALDGVSLTLG-PGMYGLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI-----------MYGCPKDVKNED 240
IDG + + LR +IG++ QE + N + G P
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEF-----GVYPNFTVREFLDYIAWLKGIPSKEVKAR 110
Query: 241 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 300
++ + + + + + LSGG ++R+ IA+A++ DP+IL++DE T+ L
Sbjct: 111 VDEVLELVNLGDR-------AKKKIGS--LSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161
Query: 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
D E + +L L D R VI+ H + ++++ +++ V++ G+++ G
Sbjct: 162 DPEERIRFRNLLSELGED----RIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-26
Identities = 63/213 (29%), Positives = 114/213 (53%), Gaps = 22/213 (10%)
Query: 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRWLREKI 210
T+ A + A+ G SGSGK++ +N++ L P +G+I ++G L D + + + +I
Sbjct: 19 FTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRI 78
Query: 211 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-- 267
G+V Q+ +L ++ N+ YG W + +A + + L G E L+D
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYG----------MWKSMRAQFDQLVALL--GIEHLLDRYP 126
Query: 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 327
LSGG+KQR+AI RA+L P +LL+DE ++LD + + L LR++ ++
Sbjct: 127 GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDE--INIPILY 184
Query: 328 IAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELL 359
++H L + + DR+VV+++G++ G E+
Sbjct: 185 VSHSLDEVLRLADRVVVLENGKVKASGPLEEVW 217
|
Length = 352 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 3e-26
Identities = 73/231 (31%), Positives = 113/231 (48%), Gaps = 43/231 (18%)
Query: 153 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRWLREK 209
+ LT+ + + +VG SGSGKST LLRL PS G+I DG + L +R LR +
Sbjct: 306 ISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-PSQGEIRFDGQDIDGLSRKEMRPLRRR 364
Query: 210 IGFVGQEP-----------QLLQMDIKSNIMYGCPKDVKNEDIEW--------AAKQAYV 250
+ V Q+P Q+++ ++ + + IE A + Y
Sbjct: 365 MQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP 424
Query: 251 HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 310
HEF SGGQ+QRIAIARA++ P ++LLDE TSALD + V
Sbjct: 425 HEF-----------------SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD 467
Query: 311 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 360
+L L+ K + + I+H L+ ++A+ R++V+ DG+I+E G +
Sbjct: 468 LLRDLQQ--KHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 3e-26
Identities = 71/245 (28%), Positives = 131/245 (53%), Gaps = 24/245 (9%)
Query: 132 VQFVNISFHYPSRPTVPI----LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 187
++F N+S+ Y + P ++ V E + AIVG +GSGKST + + L +P+
Sbjct: 3 IRFDNVSYTY--QKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT 60
Query: 188 DGQIYIDGFPLT----DLDIRWLREKIGFVGQ--EPQLLQMDIKSNIMYGCPKDVKNEDI 241
G + +D +T D IR +R++IG V Q E QL + ++ I++G PK+ ++
Sbjct: 61 TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFG-PKNF-KMNL 118
Query: 242 EWAAKQAYVHEFILSLPCGYETLVDDD---LLSGGQKQRIAIARAILRDPAILLLDEATS 298
+ + Y H ++ L G+ V +SGGQ ++IAI + +P I++LDE T+
Sbjct: 119 DEV--KNYAHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTA 174
Query: 299 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAE 357
LD +S+ V +L +L+ D +T+I+++H ++ + + D ++V+ +G I+ + E
Sbjct: 175 GLDPQSKRQVMRLLKSLQTD--ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232
Query: 358 LLHKG 362
L
Sbjct: 233 LFKDK 237
|
Length = 286 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 4e-26
Identities = 76/240 (31%), Positives = 126/240 (52%), Gaps = 31/240 (12%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LD 202
L+ + L E N+V A++G SG GKSTF+ L R+ + +G+I +DG + D +D
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKN-----EDIEWAAKQAYVHEFILS 256
+ LR ++G V Q+P I N+ YG VK+ E +E + + A + + +
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-- 139
Query: 257 LPCGYETLVDDDL-LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 315
+ L + L LSGGQ+QR+ IARA+ +P +LL+DE SALD + ++ ++H L
Sbjct: 140 ----KDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL 195
Query: 316 RNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 374
K + T+I++ H + V D G++IEVG ++ + R ++QTE
Sbjct: 196 ----KARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRPR------EKQTE 245
|
Length = 253 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 4e-26
Identities = 76/220 (34%), Positives = 113/220 (51%), Gaps = 23/220 (10%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--L 201
IL +V L I N V A++G SG GKSTF+ L R+ + +G IY+DG + D +
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 202 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 261
D+ LR+K+G V Q+P I N+ YG + ED E ++ V E + +
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGL--RIHGEDDEDFIEER-VEESLKAAALWD 134
Query: 262 ETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 315
E V D L LSGGQ+QR+ IAR I P ++L+DE SALD S ++ ++H L
Sbjct: 135 E--VKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL 192
Query: 316 RNDCKTKRTVIVIAHRLSTIKAVDRIV-VIDDGRIIEVGN 354
+ D T++++ H + V + +G IIE G
Sbjct: 193 KED----YTIVIVTHNMQQATRVSKYTSFFLNGEIIESGL 228
|
Length = 250 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 6e-26
Identities = 60/237 (25%), Positives = 118/237 (49%), Gaps = 28/237 (11%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
+Q N++ Y P ++ + L + E+ ++G +G+GK+T + +L P+ G
Sbjct: 1 LQIRNLTKTYKKGT-KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQ----LLQMDIKSNIMY-----GCPKDVKNEDIE 242
YI+G+ + D + R+ +G+ PQ ++ ++ ++ + G PK E++E
Sbjct: 60 YINGYSIRT-DRKAARQSLGYC---PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVE 115
Query: 243 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
+ L L LSGG K+++++A A++ P++LLLDE TS LD
Sbjct: 116 LLLRV-------LGLTDKANKRART--LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDP 166
Query: 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 358
S + ++ +R R++I+ H + +A+ DRI ++ DG++ +G+ EL
Sbjct: 167 ASRRAIWDLILEVR----KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 6e-26
Identities = 67/211 (31%), Positives = 114/211 (54%), Gaps = 11/211 (5%)
Query: 146 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL---D 202
+L V L+I E+VAIVG SGSGKST ++LL L P+ G++ +G L+ L +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 203 IRWLR-EKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 260
LR +K+GF+ Q LL N+ P + + ++ A ++AY E + +
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAM--PLLIGKKSVKEAKERAY--EMLEKVGLE 132
Query: 261 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 320
+ LSGG++QR+AIARA++ P+++L DE T LD+ + + ++ L +
Sbjct: 133 HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELN 192
Query: 321 TKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 351
T + +V+ H L K +DR++ + DG++
Sbjct: 193 T--SFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 7e-26
Identities = 73/240 (30%), Positives = 120/240 (50%), Gaps = 22/240 (9%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SD 188
V+F ++SF YP P LN + +I A++G +GSGKST L+ L P +
Sbjct: 6 VEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 189 GQIYIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYG-----CPKDVKNEDI 241
+I +DG LT + +REK+G V Q P Q + + ++ +G P+ + +
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 242 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 301
+ ++I S P LSGGQKQR+AIA + +P I++LDE+TS LD
Sbjct: 125 RDVLADVGMLDYIDSEPAN---------LSGGQKQRVAIAGILAVEPKIIILDESTSMLD 175
Query: 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 361
+ + ++ L+ TVI I H + D+++V+DDG+++ G+ E+ K
Sbjct: 176 PAGKEQILKLIRKLKKK--NNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
|
Length = 282 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 8e-26
Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 37/231 (16%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPL--TDLD 202
LN + L I N++ A++G SG GKSTF+ L R+ + G++ +DG + D+D
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-----KDVKNED--IEWAAKQAYVHEFIL 255
+ LR+++G V Q+P M I N+ YG P KD K D +EWA K+A + +
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYG-PRIHGIKDKKELDKIVEWALKKAALWD--- 135
Query: 256 SLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309
V DDL LSGGQ+QR+ IAR I P ++L+DE TSALD S ++
Sbjct: 136 --------EVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIE 187
Query: 310 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 359
++ L+ + T++++ H + V D G +IE ++
Sbjct: 188 DLMVELKKE----YTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234
|
Length = 251 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 8e-26
Identities = 70/235 (29%), Positives = 119/235 (50%), Gaps = 24/235 (10%)
Query: 136 NISFHY---PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 192
N+S+ Y L+ V L ++ E + I+G +GSGKST + L PS+G++Y
Sbjct: 9 NVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVY 68
Query: 193 IDGFPLTDLDIRW-LREKIGFVGQEP--QLLQMDIKSNIMYG------CPKDVKNEDIEW 243
+DG +D + W +R K G V Q P Q++ ++ ++ +G P++++ E ++
Sbjct: 69 VDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIR-ERVDE 127
Query: 244 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303
+ K+ ++E+ P LLSGGQKQR+AIA + P ++ DE T+ LD
Sbjct: 128 SLKKVGMYEYRRHAP---------HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS 178
Query: 304 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 358
V + L K T+I+I H + DRI+V+D G+++ G E+
Sbjct: 179 GRREVVNTIKELNK--KYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231
|
Length = 280 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-25
Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 20/206 (9%)
Query: 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 214
L + E+VAI+G SG+GKST +NL+ EP+ G I ++ T L + + +
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPY--QRPVSMLF 76
Query: 215 QEPQLL-QMDIKSNIMYGCPKDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDDD 268
QE L + ++ NI G +K E + AA+Q + +++ LP +
Sbjct: 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP---------E 127
Query: 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVI 328
LSGGQ+QR+A+AR ++R ILLLDE SALD + ++ L ++ +RT++++
Sbjct: 128 QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE--RQRTLLMV 185
Query: 329 AHRLS-TIKAVDRIVVIDDGRIIEVG 353
H LS +I V+ G+I V
Sbjct: 186 THHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-25
Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 24/231 (10%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
M + ++S Y +P L V LTI + E+V ++G SG GK+T +NL+ PS
Sbjct: 1 MCMLNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR 59
Query: 189 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQ 247
G I ++G + G V Q LL +++ N+ +G ++ IE A ++
Sbjct: 60 GSIQLNGRRIEGPGAER-----GVVFQNEALLPWLNVIDNVAFG----LQLRGIEKAQRR 110
Query: 248 AYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305
H+ + + G E + LSGG +QR+ IARA+ +P +LLLDE ALD+ +
Sbjct: 111 EIAHQMLALV--GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTR 168
Query: 306 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV---DRIVVID--DGRIIE 351
++ +L L + T + V++I H + +A+ R+VV+ GR++E
Sbjct: 169 EQMQELLLDLWQE--TGKQVLLITHDIE--EALFLATRLVVLSPGPGRVVE 215
|
Length = 259 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 4e-25
Identities = 75/239 (31%), Positives = 126/239 (52%), Gaps = 18/239 (7%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
M + + FH ++ T+ LN+V L + A ++ ++G SG+GKST + + L P+
Sbjct: 1 MIKLSNITKVFHQGTK-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTS 59
Query: 189 GQIYIDGFPLTDL---DIRWLREKIGFVGQEPQLLQMDIKSNIMYG---CPKDVKNEDIE 242
G + +DG LT L ++ R +IG + Q LL S ++G P ++ N +
Sbjct: 60 GSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS----SRTVFGNVALPLELDNTPKD 115
Query: 243 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
++ V E + + G + LSGGQKQR+AIARA+ +P +LL DEATSALD
Sbjct: 116 EIKRK--VTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173
Query: 303 ESEHYVKGVLHALRNDCKT-KRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 359
+ + +L L+ + T+++I H + +K + D + VI +G +IE G +E+
Sbjct: 174 AT---TQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 7e-25
Identities = 79/244 (32%), Positives = 122/244 (50%), Gaps = 32/244 (13%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS-- 187
+Q ++S +Y + LN V L NE+ A++G SGSGKST + + R+ + P
Sbjct: 6 LQVSDLSVYYNKKKA---LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT 62
Query: 188 -DGQIYIDGF----PLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDV 236
G I +G P TD LR++IG V Q+P M I N++YG K V
Sbjct: 63 ITGSIVYNGHNIYSPRTD--TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQV 120
Query: 237 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL-LSGGQKQRIAIARAILRDPAILLLDE 295
+E +E + K A + + + + L D L LSGGQ+QR+ IAR + P I+LLDE
Sbjct: 121 LDEAVEKSLKGASIWDEV------KDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDE 174
Query: 296 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 354
TSALD S ++ L L++D T++++ + + DR DG +IE +
Sbjct: 175 PTSALDPISAGKIEETLLGLKDD----YTMLLVTRSMQQASRISDRTGFFLDGDLIEYND 230
Query: 355 HAEL 358
++
Sbjct: 231 TKQM 234
|
Length = 252 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 7e-25
Identities = 54/211 (25%), Positives = 108/211 (51%), Gaps = 15/211 (7%)
Query: 146 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 205
V L+ + ++E E+ ++G +G+GK+T + ++L + P G++ DG PL
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA--- 68
Query: 206 LREKIGFVGQEPQLLQ-MDIKSNIMY-GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 263
R +IG++ +E L M + ++Y K +K E+ + + E++ L
Sbjct: 69 -RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEA-----RRRIDEWLERLELSEYA 122
Query: 264 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 323
+ LS G +Q++ A++ DP +L+LDE S LD + +K V+ L + +
Sbjct: 123 NKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELA---RAGK 179
Query: 324 TVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
TVI+ H++ ++ + DR+++++ GR + G
Sbjct: 180 TVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 3e-24
Identities = 55/230 (23%), Positives = 101/230 (43%), Gaps = 33/230 (14%)
Query: 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 192
+ ++ L + I E V I+G +G+GKST + L+ +Y+P+ G++
Sbjct: 26 RLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVK 85
Query: 193 IDG--FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI-----MYGCPKDVKNEDIEWAA 245
+ G PL +L G +P+L + NI + G + +E ++
Sbjct: 86 VTGKVAPLIELG----------AGFDPELTGRE---NIYLRGLILGLTRKEIDEKVDEII 132
Query: 246 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305
+ A + +FI P S G R+A + A +P ILLLDE + D+ +
Sbjct: 133 EFAELGDFI-DQPVKT--------YSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQ 183
Query: 306 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 354
L+ L + +T+++++H L IK DR + ++ G+I G+
Sbjct: 184 EKCLERLNELV---EKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.7 bits (248), Expect = 3e-24
Identities = 75/246 (30%), Positives = 116/246 (47%), Gaps = 47/246 (19%)
Query: 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS- 187
V F FH L + + IE VVA +G SG GKSTF+ L R+ + P+
Sbjct: 8 DVNFWYGDFH--------ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT 59
Query: 188 --DGQIYIDGFPLTDLDIR--WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEW 243
+G+I IDG + D ++ LR+ +G V Q P I N+ YG + ++
Sbjct: 60 RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDN--- 116
Query: 244 AAKQAYVHEFILSLPCGYETL--------VDDDL------LSGGQKQRIAIARAILRDPA 289
A++ + + ETL V D L LSGGQ+QR+ IARA+ P+
Sbjct: 117 ----AFIRQRVE------ETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPS 166
Query: 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGR 348
+LL+DE SALD S V+ ++H L+ D T++++ H + V D+ G
Sbjct: 167 VLLMDEPASALDPISTAKVEELIHELKKD----YTIVIVTHNMQQAARVSDKTAFFYMGE 222
Query: 349 IIEVGN 354
++E +
Sbjct: 223 MVEYDD 228
|
Length = 250 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.6 bits (245), Expect = 7e-24
Identities = 79/237 (33%), Positives = 119/237 (50%), Gaps = 27/237 (11%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIY 192
N++ Y + + +N + IE N++ A++G SG GKSTF+ R+ + DG +
Sbjct: 7 NLNLFYGKKQALFDIN---MQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVE 63
Query: 193 IDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK---DVKNEDIEWAAKQAY 249
I+G + + D+ LR+ +G V Q+P + I NI Y PK +KN+D E +A
Sbjct: 64 IEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA-PKLHGMIKNKDEE----EAL 118
Query: 250 VHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303
V + + + G V D L LSGGQ+QR+ IARA+ P +LLLDE TSALD
Sbjct: 119 VVDCLQKV--GLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPI 176
Query: 304 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 359
S GV+ L + ++I++ H + K V D G +IE G E
Sbjct: 177 SS----GVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229
|
Length = 246 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 7e-24
Identities = 53/238 (22%), Positives = 95/238 (39%), Gaps = 36/238 (15%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++ N+S + IL + + E AIVG +G+GK+T ++LL + PS G +
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 192 YIDGFPLTDLDIRW-LREKIGFVGQEPQLLQMDIKSNI---------------MYGCPKD 235
+ G + + LR++IG V E L + +Y
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSE---LHERFRVRETVRDVVLSGFFASIGIYQEDLT 145
Query: 236 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLL 293
+ AA Q + L D LS G+++R+ IARA+++DP +L+L
Sbjct: 146 ----AEDLAAAQWLLELLGAK------HLADRPFGSLSQGEQRRVLIARALVKDPELLIL 195
Query: 294 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 350
DE LD + + L L ++ + H I +++ +G ++
Sbjct: 196 DEPAQGLDLIAREQLLNRLEELAAS-PGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 8e-24
Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 48/237 (20%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL---TDLD--- 202
+L V L A +V++I+G SGSGKSTF+ + L +PS G I ++G + D D
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 203 -------IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDV----KNEDIEWAAK---Q 247
++ LR ++G V Q L M + N++ P V K E IE A K +
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIE-APVHVLGVSKAEAIERAEKYLAK 139
Query: 248 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 307
+ E + P LSGGQ+QR+AIARA+ +P ++L DE TSALD E
Sbjct: 140 VGIAEKADAYPA---------HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE---L 187
Query: 308 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRL 364
V VL +++ + RT++V+ H + + +V +H LH+G++
Sbjct: 188 VGEVLKVMQDLAEEGRTMVVVTHEMGFAR--------------DVSSHVIFLHQGKI 230
|
Length = 256 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 8e-24
Identities = 72/243 (29%), Positives = 118/243 (48%), Gaps = 25/243 (10%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
V+F +++ + + +L+ + ++ A E VA++G SGSGKST + +L+ L +GQI
Sbjct: 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI 57
Query: 192 YIDG-------------FPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVK 237
++G P + +R +R KIG V Q L + N+ P V
Sbjct: 58 QVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEA-PVLVL 116
Query: 238 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 297
+ A + E + + + LSGGQ+QR+AIARA+ P ++L DE T
Sbjct: 117 G--MARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVT 174
Query: 298 SALDSESEHYVKGVLHALRNDC-KTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNH 355
SALD E V VL+ +R + T++++ H + + DR+ D GRI+E G
Sbjct: 175 SALDPE---LVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKP 231
Query: 356 AEL 358
E+
Sbjct: 232 DEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 96.3 bits (241), Expect = 1e-23
Identities = 55/206 (26%), Positives = 96/206 (46%), Gaps = 45/206 (21%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLRE 208
+ V + A E+V I GL G+G++ L L P+ G+I +DG P+T R +R
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 209 KIGFVGQEPQ----LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 264
I +V ++ + +L + + NI +L
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENI---------------------------ALSS----- 103
Query: 265 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRT 324
LLSGG +Q++ +AR + RDP +L+LDE T +D ++ + ++ L + K
Sbjct: 104 ----LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGK---A 156
Query: 325 VIVIAHRLSTIKAV-DRIVVIDDGRI 349
V++I+ L + + DRI+V+ +GRI
Sbjct: 157 VLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 2e-23
Identities = 70/236 (29%), Positives = 122/236 (51%), Gaps = 29/236 (12%)
Query: 132 VQFVNISFHY-PSRPTVPI-LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 189
++F N+ + Y P P L+++ +E VA+VG +GSGKST + L +PS G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 190 QIYIDGFPLT----DLDIRWLREKIGFVGQ--EPQLLQMDIKSNIMYGCPKD-------V 236
I I G+ +T + +++ LR+K+ V Q E QL + + ++ +G PK+
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFG-PKNFGFSEDEA 121
Query: 237 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 296
K + ++W K + I P +E LSGGQ +R+AIA + +P IL LDE
Sbjct: 122 KEKALKWLKKVGLSEDLISKSP--FE-------LSGGQMRRVAIAGVMAYEPEILCLDEP 172
Query: 297 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIE 351
+ LD E K ++ ++ K TVI++ H + + + D ++V++ G++I+
Sbjct: 173 AAGLDPEGR---KEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225
|
Length = 287 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 2e-23
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 26/222 (11%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209
++ V + EV +G +G+GK+T + +L L P+ G + G+ + + R +R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRS 67
Query: 210 IGFVGQEPQLLQMDIK----SNIM-----YGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 260
IG V Q + D N+ YG PKD E E + + E
Sbjct: 68 IGIVPQYASV---DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGT 124
Query: 261 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 320
Y SGG ++R+ IA +++ P +L LDE T+ LD + + + AL+ +
Sbjct: 125 Y---------SGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK---E 172
Query: 321 TKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 361
T+++ H + + DRI +ID GRII G EL +
Sbjct: 173 EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.4 bits (242), Expect = 2e-23
Identities = 79/254 (31%), Positives = 123/254 (48%), Gaps = 43/254 (16%)
Query: 125 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 184
Q+L+ ++ ++SF+Y T + + + I N+V AI+G SG GKSTF+ L R+
Sbjct: 1 NQQLIPAIKVKDLSFYYN---TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS 57
Query: 185 E-----PSDGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC----- 232
E +G + G + D ++I LR +IG V Q P M I N+ YG
Sbjct: 58 ELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAK 117
Query: 233 -PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAIL 285
P+ +E +E A K A + + V D L LSGGQ+QR+ IARA+
Sbjct: 118 LPQADLDEIVESALKGAALWQ-----------EVKDKLNKSALGLSGGQQQRLCIARALA 166
Query: 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI- 344
P +LL+DE SALD + V+ ++H+LR++ T+ ++ H + V
Sbjct: 167 IKPKVLLMDEPCSALDPIATMKVEELIHSLRSEL----TIAIVTHNMQQATRVSDFTAFF 222
Query: 345 --DDGRI---IEVG 353
D+ RI +E G
Sbjct: 223 STDESRIGQMVEFG 236
|
Length = 259 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 2e-23
Identities = 57/197 (28%), Positives = 103/197 (52%), Gaps = 11/197 (5%)
Query: 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 207
ILN++ ++ A E I G SG GKST + ++ L P+ G + +G ++ L R
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYR 80
Query: 208 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 267
+++ + Q P L + N+++ P ++N+ + A + F +LP +T++
Sbjct: 81 QQVSYCAQTPTLFGDTVYDNLIF--PWQIRNQQPDPAIFLDDLERF--ALP---DTILTK 133
Query: 268 DL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV 325
++ LSGG+KQRI++ R + P +LLLDE TSALD ++H V ++H + V
Sbjct: 134 NIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNI--AV 191
Query: 326 IVIAHRLSTIKAVDRIV 342
+ + H I D+++
Sbjct: 192 LWVTHDKDEINHADKVI 208
|
Length = 225 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.3 bits (242), Expect = 4e-23
Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 44/245 (17%)
Query: 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----- 185
V+ ++S +Y + V N + + IE + V A++G SG GKSTF+ + R+ +
Sbjct: 23 EVK--DLSIYYGEKRAV---NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSA 77
Query: 186 PSDGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP------KDVK 237
S+G+I +G + D +++ LR +IG V Q+P I +NI + K V
Sbjct: 78 RSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVL 137
Query: 238 NEDIE--------WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289
+E +E W + +H LSL SGGQ+QR+ IAR + PA
Sbjct: 138 DEIVEESLTKAALWDEVKDRLHSSALSL-------------SGGQQQRLCIARTLAMKPA 184
Query: 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGR 348
+LLLDE SALD S ++ ++ L+ + ++I++ H + ++ DR +G
Sbjct: 185 VLLLDEPASALDPISNAKIEELITELKEE----YSIIIVTHNMQQALRVSDRTAFFLNGD 240
Query: 349 IIEVG 353
++E
Sbjct: 241 LVEYD 245
|
Length = 268 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 4e-23
Identities = 59/228 (25%), Positives = 95/228 (41%), Gaps = 35/228 (15%)
Query: 135 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 194
+ I L V + E + ++G +G+GKST + LL +Y P G + +
Sbjct: 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVR 82
Query: 195 GFPLTDLDIRWLREKIGF-VGQEPQLLQMDIKSNI-----MYGCPKDVKNEDIEWAAKQA 248
G + L +G G P+L + NI + G + E K
Sbjct: 83 G------RVSSL---LGLGGGFNPELTGRE---NIYLNGRLLGLSRK------EIDEKID 124
Query: 249 YVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306
+ EF +D + S G K R+A A A +P ILL+DE + D
Sbjct: 125 EIIEF-----SELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGD---AA 176
Query: 307 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
+ + LR K +TVI+++H S+IK + DR +V++ G+I G
Sbjct: 177 FQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 4e-23
Identities = 66/200 (33%), Positives = 100/200 (50%), Gaps = 34/200 (17%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLT--DLD 202
+ + + E N++ A++G SGSGKST++ L R+ + D GQI G + +++
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-VKN-----EDIEWAAKQAYVHEFILS 256
+ +R+ IG V Q P I NI + + VK+ E +E + KQA + +
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD---- 151
Query: 257 LPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 310
V DDL LSGGQ+QR+ IARAI P ILL+DE SALD S ++
Sbjct: 152 -------QVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEE 204
Query: 311 VLHALRNDCKTKRTVIVIAH 330
+ L K T+I++ H
Sbjct: 205 TMFEL----KKNYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 4e-23
Identities = 68/227 (29%), Positives = 109/227 (48%), Gaps = 30/227 (13%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPL-TDLDI 203
L + L I A +V A++G SG GKST + L R+ + G++ +DG + ++D+
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFILSLPC 259
LR K+G V Q+P M I N+ YG KD K D V +
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLD-------EVVERSLRGAAL 131
Query: 260 GYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 313
E V D L LSGGQ+QR+ IAR I +P ++L+DE TSALD + H ++ ++
Sbjct: 132 WDE--VKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELME 189
Query: 314 ALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 359
L+ T++++ H + + + DR G ++E + +
Sbjct: 190 ELKK----NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232
|
Length = 249 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 5e-23
Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 39/243 (16%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
+Q I+ Y + L + L E + ++G SG+GKS+ + +L L P G +
Sbjct: 3 IQLNGINCFYGAHQ---ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 192 YIDG--FPLT----DLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWA 244
I G F + D IR LR +G V Q+ L + ++ N++ P V + A
Sbjct: 60 NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEA-PCRVLGLSKDQA 118
Query: 245 AKQA-----------YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLL 293
+A Y F L LSGGQ+QR+AIARA++ +P +LL
Sbjct: 119 LARAEKLLERLRLKPYADRFPLH-------------LSGGQQQRVAIARALMMEPQVLLF 165
Query: 294 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEV 352
DE T+ALD E + ++ L T T +++ H + + R+V +++G I+E
Sbjct: 166 DEPTAALDPEITAQIVSIIRELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222
Query: 353 GNH 355
G+
Sbjct: 223 GDA 225
|
Length = 242 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 7e-23
Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 27/239 (11%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-------- 200
LN++ T E N++ I+G SGSGKST V L + G I + + D
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 201 --------LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 250
+ + LR ++ V Q P QL + I+ +IM+G P + + E +
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFG-PVALGVKKSEAKKLAKF- 158
Query: 251 HEFILSLPCGYETLVDDDL-LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309
++ + L LSGGQK+R+AIA + P IL+ DE T+ LD + EH
Sbjct: 159 --YLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHE-- 214
Query: 310 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYAK 367
++ + + +TV VI H + + V D ++V+D G+I++ G E+ +
Sbjct: 215 -MMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINS 272
|
Length = 320 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 7e-23
Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 31/244 (12%)
Query: 136 NISFHYPS------RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 189
+++ Y + + P+L +V L+IE E V ++G SG GKST LLL L +P+ G
Sbjct: 7 DVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQG 66
Query: 190 QIYIDGFPLTDLD---IRWLREKIGFVGQE-PQLL--QMDIKSNIMYGCPKDVKN-EDIE 242
+ G L LD R R + V Q+ P + +M ++ I G P +++ ++
Sbjct: 67 TVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEP--LRHLTSLD 122
Query: 243 WAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEA 296
+ ++A + E + + L +D LSGGQ QRI IARA+ P +++LDEA
Sbjct: 123 ESEQKARIAELLDMV-----GLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEA 177
Query: 297 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNH 355
S LD + + +L L+ T + I H L +++ R+ V+D G+I+E +
Sbjct: 178 VSNLDMVLQAVILELLRKLQQAFGT--AYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235
Query: 356 AELL 359
A+LL
Sbjct: 236 AQLL 239
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 7e-23
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 21/225 (9%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLRE 208
+N V L + E+V ++G +G+GK+T NL+ Y+PS G + G +T L R R
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79
Query: 209 KIGFVGQEPQLLQ-MDIKSNIMYGC------------PKDVKNEDIEWAAKQAYVHEFIL 255
I Q +L + + N+ G P+ K E A ++A +
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEE--REARERARELLEFV 137
Query: 256 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 315
L + + LS GQ++R+ IARA+ P +LLLDE + L+ E + ++ L
Sbjct: 138 GLGELADRPAGN--LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIREL 195
Query: 316 RNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 359
R+ T+++I H + + DRIVV++ G +I G E+
Sbjct: 196 RDR--GGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238
|
Length = 250 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 9e-23
Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 36/225 (16%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTDLDIR 204
L+ V + I N+V A++G SG GKSTF+ + R+ + D G++ G + D D+
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 205 --WLREKIGFVGQEPQLLQMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSL 257
LR +IG V Q+P I N+ YG D+ +E +E + ++A + +
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDI-DERVEESLRRAALWD----- 168
Query: 258 PCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 311
V D L LSGGQ+QR+ IARAI DP ++L+DE SALD + ++ +
Sbjct: 169 ------EVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDL 222
Query: 312 LHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVV-IDDGRIIEVGN 354
+ L + TV+++ H + + D+ V + G ++E +
Sbjct: 223 IEELAEE----YTVVIVTHNMQQAARISDKTAVFLTGGELVEFDD 263
|
Length = 285 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 2e-22
Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 29/243 (11%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
+Q I+ Y + L + L E + ++G SG+GKS+ + +L L P G +
Sbjct: 3 IQLNGINCFYGAHQA---LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 192 YIDG--FPL----TDLDIRWLREKIGFVGQEPQLL-QMDIKSNIM------YGCPKDVKN 238
I G F +D IR LR +G V Q+ L + ++ N++ G KD
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119
Query: 239 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS 298
E K+ + + P LSGGQ+QR+AIARA++ +P +LL DE T+
Sbjct: 120 ARAEKLLKRLRLKPYADRYPLH---------LSGGQQQRVAIARALMMEPQVLLFDEPTA 170
Query: 299 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAE 357
ALD E + ++ L +T T +++ H + + R+V +++G I+E G+ +
Sbjct: 171 ALDPEITAQIVSIIKELA---ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227
Query: 358 LLH 360
Sbjct: 228 FTE 230
|
Length = 242 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 3e-22
Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 13/207 (6%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL---TDLDIRW 205
+L + L I E+V + G SGSGK+T + L+ L +G + + G L ++ ++
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 206 LREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 264
LR IG++ Q LL + + N+ ++ + + + ++ G
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALE---LQPNLSYQEARERARAMLEAV--GLGDH 134
Query: 265 VD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK 322
+D LSGGQKQR+AIARA++ P ++L DE T+ALDS+S V ++ L +
Sbjct: 135 LDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGC- 193
Query: 323 RTVIVIAHRLSTIKAVDRIVVIDDGRI 349
T++++ H + DRIV ++DG++
Sbjct: 194 -TILIVTHDNRILDVADRIVHMEDGKL 219
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 4e-22
Identities = 56/215 (26%), Positives = 103/215 (47%), Gaps = 25/215 (11%)
Query: 146 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 205
+L+ + L ++ E+ +G +G+GK+T + ++L L +P G+I DG
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL 71
Query: 206 LREKIGFVGQEPQL-LQMDIKSNI-----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPC 259
+IG + + P + + N+ + G K +E ++ + + +
Sbjct: 72 --RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGF-- 127
Query: 260 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319
S G KQR+ IA A+L +P +L+LDE T+ LD + ++ ++ +LR
Sbjct: 128 -----------SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLR--- 173
Query: 320 KTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVG 353
TV++ +H LS I K DRI +I+ G++IE G
Sbjct: 174 DQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.9 bits (233), Expect = 4e-22
Identities = 69/224 (30%), Positives = 106/224 (47%), Gaps = 39/224 (17%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT-------DLD 202
L + L NE+ A++G SG GKST++ L R+ + G L + D
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDVKNEDIEWAAKQAYV------ 250
+ LR+++G V Q+P I N++YG K V +E +E + KQA +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140
Query: 251 --HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 308
HE LSL SGGQ+QR+ IAR + P ++LLDE TSALD S +
Sbjct: 141 HLHESALSL-------------SGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQI 187
Query: 309 KGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIE 351
+ +L LR+ + T+I++ H + + D+ G +IE
Sbjct: 188 ENMLLELRD----QYTIILVTHSMHQASRISDKTAFFLTGNLIE 227
|
Length = 252 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 4e-22
Identities = 76/222 (34%), Positives = 110/222 (49%), Gaps = 28/222 (12%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTD--LD 202
L V L I V A +G SG GKSTF+ L R+ + D G+I +DG + D LD
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAK-QAYVHEFIL-SL-PC 259
+ LR ++G V Q+P I N+ YG P+ I A+ +A + E + SL
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYG-PR------IHGLARSKAELDEIVETSLRKA 147
Query: 260 GYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 313
G V D L LSGGQ+QR+ IARAI P ++L+DE SALD + V+ ++
Sbjct: 148 GLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELID 207
Query: 314 ALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 354
LR T++++ H + V R G ++EVG+
Sbjct: 208 ELR----QNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245
|
Length = 267 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.9 bits (233), Expect = 5e-22
Identities = 74/249 (29%), Positives = 121/249 (48%), Gaps = 31/249 (12%)
Query: 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----- 185
++ N++ Y + L +V + I N V A++G SG GKSTF+ L R+ +
Sbjct: 12 QIKVENLNLWYGEKQA---LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68
Query: 186 PSDGQIYIDGFPL--TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK--DVKNEDI 241
+G++ I+G + D+D+ LR+ +G V Q+P M I N+ YG P+ +D+
Sbjct: 69 RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYG-PRIHGANKKDL 127
Query: 242 EWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDE 295
+ + A + S ET D L LSGGQ+QR+ IAR + P I+L DE
Sbjct: 128 DGVVENA-----LRSAALWDET--SDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDE 180
Query: 296 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 354
TSALD S ++ ++ L+ D T++++ H + + D G +IE G
Sbjct: 181 PTSALDPISTARIEDLIMNLKKD----YTIVIVTHNMQQAARISDYTGFFLMGELIEFGQ 236
Query: 355 HAELLHKGR 363
++ H R
Sbjct: 237 TRQIFHNPR 245
|
Length = 258 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (236), Expect = 5e-22
Identities = 78/231 (33%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQ 190
N +F Y +R T +L+ + L I+ N+V A +G SG GKSTF+ L +L + +G+
Sbjct: 85 NFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGE 143
Query: 191 IYIDGFPLTDLDIRWL--REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 248
IY G I L R +IG V Q+P +M I N+ YG P++ D + K
Sbjct: 144 IYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYG-PRNNGINDRKILEK-- 200
Query: 249 YVHEFILSLPCGYETLVDD-----DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303
+ E L ++ + DD + LSGGQ+QR+ IARAI +P +LL+DE TSALD
Sbjct: 201 -IVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPI 259
Query: 304 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
+ ++ ++ L K K ++I++ H ++ + + D V G I E G
Sbjct: 260 ATAKIEELILEL----KKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306
|
Length = 329 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 6e-22
Identities = 68/232 (29%), Positives = 117/232 (50%), Gaps = 20/232 (8%)
Query: 135 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 194
++ + YP L + E E+VA++G +G+GKST + +P+ G++ I
Sbjct: 5 RDLKYSYPDGTEA--LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIK 62
Query: 195 GFPLTDLDIRWL---REKIGFVGQEP--QLLQMDIKSNIMYGCPKDVK--NEDIEWAAKQ 247
G P+ D + L R+ +G V Q P QL ++ ++ +G P ++ E++E K+
Sbjct: 63 GEPI-KYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFG-PLNLGLSKEEVEKRVKE 120
Query: 248 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 307
A + + G+E L SGGQK+R+AIA + P I++LDE TS LD
Sbjct: 121 A-LKAVGME---GFENKPPHHL-SGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175
Query: 308 VKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAEL 358
+ +L+ L K T+I+ H + + D++ V+ DG+II+ G E+
Sbjct: 176 IMKLLYDLN---KEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 9e-22
Identities = 65/238 (27%), Positives = 116/238 (48%), Gaps = 22/238 (9%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++ ++ F Y L + L+I A++G +G+GKST + L +Y P G++
Sbjct: 5 IEVEDLHFRYKDGTKA--LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYG-----CPKDVKNEDIEWA 244
+ G + + +W+R K+G V Q+P Q+ + ++ +G KD +E A
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 245 AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304
K + +F P Y LS GQK+R+AIA + DP +++LDE + LD
Sbjct: 123 LKAVRMWDFRDKPP--YH-------LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRG 173
Query: 305 EHYVKGVLHALRNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELLHK 361
+ + +L L N K TVIV H + + D+++V+ +GR++ G+ + L +
Sbjct: 174 QETLMEILDRLHNQGK---TVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDE 228
|
Length = 274 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 1e-21
Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 36/225 (16%)
Query: 153 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS---DGQIYIDGFPL--TDLDIRW 205
V L IE V A +G SG GKST + L R++E P +G++ +DG L +D
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 206 LREKIGFVGQEPQLL-QMDIKSNIMYGC------PKDVKNEDIEWAAKQAYVHEFI---L 255
+R IG V Q P M I+ N++ G K +E +E + + A + + L
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRL 142
Query: 256 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 315
P G LSGGQ+QR+ IARAI +P +LL+DE SALD S ++ +++ L
Sbjct: 143 DKPGGG--------LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL 194
Query: 316 RNDCKTKRTVIVIAHRLSTIKAV-DRIV------VIDDGRIIEVG 353
+ D T++++ H + V D+ GR++E+
Sbjct: 195 KQD----YTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEID 235
|
Length = 258 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 1e-21
Identities = 68/214 (31%), Positives = 107/214 (50%), Gaps = 14/214 (6%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208
L + L+++ E V ++G SG GK+T + ++ L + G IY G +T L + +
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KR 76
Query: 209 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 267
G V Q L + + NI YG +KN + A V E +L L G
Sbjct: 77 DYGIVFQSYALFPNLTVADNIAYG----LKNRGMGRAEVAERVAE-LLDL-VGLPGSERK 130
Query: 268 --DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV 325
LSGGQ+QR+A+ARA+ P +LLLDE SALD+ +++ + L+ + T
Sbjct: 131 YPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR--RLGVTT 188
Query: 326 IVIAH-RLSTIKAVDRIVVIDDGRIIEVGNHAEL 358
I++ H + + DRIVV++ G I +VG E+
Sbjct: 189 IMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI 222
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 2e-21
Identities = 66/225 (29%), Positives = 120/225 (53%), Gaps = 25/225 (11%)
Query: 125 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 184
+ +L+ ++ N+SF+Y T IL V + I ++V AI+G SG GKSTF+ L R+
Sbjct: 1 MSKLIPAIKVNNLSFYYD---TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN 57
Query: 185 EPSDGQIYIDG--------FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC---- 232
E + ++ ++G +++ LR ++ V +P L M + N+ YG
Sbjct: 58 E-LESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVG 116
Query: 233 --PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 290
PK ++ +E A K A + + I +++ +D LSGGQ+QR+ IARA+ P +
Sbjct: 117 WRPKLEIDDIVESALKDADLWDEIKHKI--HKSALD---LSGGQQQRLCIARALAVKPKV 171
Query: 291 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335
LL+DE LD + V+ ++ +LR +++ T+++++H L +
Sbjct: 172 LLMDEPCFGLDPIASMKVESLIQSLR--LRSELTMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 3e-21
Identities = 76/265 (28%), Positives = 120/265 (45%), Gaps = 59/265 (22%)
Query: 136 NISFHYPSR-PTV-PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-- 191
NI + + PT L++V + I E +AI+G +GSGK+TF+ L L P G I
Sbjct: 7 NIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEW 66
Query: 192 -YIDGFPLTDLD---------------------IRWLREKIGFVGQ--EPQLLQMDIKSN 227
+ D I+ +R ++G V Q E QL + I+ +
Sbjct: 67 IFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKD 126
Query: 228 IMYGCPKDV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL---------LSGGQK 275
I++G P + K E + AAK Y LV D LSGGQK
Sbjct: 127 IIFG-PVSMGVSKEEAKKRAAK--------------YIELVGLDESYLQRSPFELSGGQK 171
Query: 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-ST 334
+R+A+A + +P L+ DE T+ LD + VK +L N K +T+I++ H L +
Sbjct: 172 RRVALAGILAMEPDFLVFDEPTAGLDPQG---VKEILEIFDNLNKQGKTIILVTHDLDNV 228
Query: 335 IKAVDRIVVIDDGRIIEVGNHAELL 359
++ R + DG+II+ G+ ++L
Sbjct: 229 LEWTKRTIFFKDGKIIKDGDTYDIL 253
|
Length = 305 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 3e-21
Identities = 64/202 (31%), Positives = 98/202 (48%), Gaps = 29/202 (14%)
Query: 141 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL-- 198
YP P V L + E EV+A++G +G+GKST + L L P G + IDG PL
Sbjct: 1 YPGGPEV--LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 199 TDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 256
+ + R+++G V Q+P QL D+ ++ +G P ++ + E + V E +
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFG-PLNLGLSEAEVERR---VREAL-- 112
Query: 257 LPCGYETLVDDD--------LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 308
T V LSGG+K+R+AIA A+ P +LLLDE T+ LD +
Sbjct: 113 ------TAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQM 166
Query: 309 KGVLHALRNDCKTKRTVIVIAH 330
+L LR + TV++ H
Sbjct: 167 LAILRRLRAEGM---TVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 3e-21
Identities = 67/258 (25%), Positives = 110/258 (42%), Gaps = 56/258 (21%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
M + N+S Y RP +L +V LT+ E + +VG +G+GKST + +L EP
Sbjct: 1 MSMITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS 57
Query: 189 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD-IKSNIMYGCPK---------DVKN 238
G++ ++G++ QEP L + ++ G + +
Sbjct: 58 GEVTRPK-----------GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYA 106
Query: 239 EDIEWAAKQAYVHEFILSLPCGYET-----LVDDDL-----------LSGGQKQRIAIAR 282
+ + E +L G+ L LSGG ++R+A+AR
Sbjct: 107 LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALAR 166
Query: 283 AILRDPAILLLDEATSALDSES----EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV 338
A+L +P +LLLDE T+ LD ES E Y+K + TVIV++H + V
Sbjct: 167 ALLEEPDLLLLDEPTNHLDLESIEWLEDYLK----------RYPGTVIVVSHDRYFLDNV 216
Query: 339 -DRIVVIDDGRIIE-VGN 354
I+ +D G++ GN
Sbjct: 217 ATHILELDRGKLTPYKGN 234
|
Length = 530 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 3e-21
Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 38/221 (17%)
Query: 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 214
LT+E E VAI+G SG+GKST +NL+ P+ G + ++G T R + +
Sbjct: 20 LTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSMLF 77
Query: 215 QEPQLL-QMDIKSNIMYGCPKDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDDD 268
QE L + + NI G +K E + A+Q + + + LP
Sbjct: 78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQ-------- 129
Query: 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND--------CK 320
LSGGQ+QR+A+AR ++R+ ILLLDE SALD ALR + C+
Sbjct: 130 -LSGGQRQRVALARCLVREQPILLLDEPFSALDP-----------ALRQEMLTLVSQVCQ 177
Query: 321 TKR-TVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 359
++ T+++++H L + R +V+ DGRI G ELL
Sbjct: 178 ERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218
|
Length = 232 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.2 bits (226), Expect = 3e-21
Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 35/230 (15%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPL--TDLD 202
L+ + L E E+ A++G SG GKSTF+ L R+ + + G+I +G + + +D
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP------KDVKNEDIEWAAKQAYVHEFILS 256
+ LR+++G V Q+P + N+ YG K++ ++ +E + KQA + +
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK---- 135
Query: 257 LPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 310
ET D+L SGGQ+QRI IARA+ P ++LLDE TSALD S ++
Sbjct: 136 -----ET--KDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEE 188
Query: 311 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 359
L L++ T I++ H L + D+ + +G +IE G E+
Sbjct: 189 TLMELKHQ----YTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234
|
Length = 251 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 4e-21
Identities = 75/241 (31%), Positives = 119/241 (49%), Gaps = 28/241 (11%)
Query: 130 GHVQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
G + F + Y R +P +L V I E V IVG +GSGKST + +R+ E
Sbjct: 1307 GSLVFEGVQMRY--REGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCG 1364
Query: 189 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI---MYGCPKDVKNEDIEWAA 245
G+I ++G + +R LR + + Q+P L ++ N+ + +V WAA
Sbjct: 1365 GEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEV------WAA 1418
Query: 246 KQAY-VHEFILSLPCGYETLVDDDLL--SGGQKQRIAIARAIL-RDPAILLLDEATS--- 298
+ + E + S G ++ V + S GQ+Q + +ARA+L + +L+DEAT+
Sbjct: 1419 LELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANID 1478
Query: 299 -ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 357
ALD + + V A TVI IAHRL T+ D+I+V+D G + E+G+ E
Sbjct: 1479 PALDRQIQATVMSAFSAY--------TVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRE 1530
Query: 358 L 358
L
Sbjct: 1531 L 1531
|
Length = 1560 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.5 bits (227), Expect = 4e-21
Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 37/226 (16%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFV---NLLLRL---YEPSDGQIYIDGFPLTD-LD 202
L ++ L+I NEV AI+G SG GKSTF+ NL++++ + + Y L +D
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK--DVKN-----EDIEWAAKQAYVHEFIL 255
+ LR+ IG V Q+ I N+ YG P+ KN E +E + K + +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYG-PRIHGTKNKKKLQEIVEKSLKDVALWD--- 143
Query: 256 SLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309
V D L LSGGQ+QR+ IARA+ +P +LL+DE TSALD S ++
Sbjct: 144 --------EVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIE 195
Query: 310 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 354
++ L K K T++++ H + V D+ G ++E +
Sbjct: 196 ELILKL----KEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECND 237
|
Length = 259 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 4e-21
Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 20/220 (9%)
Query: 144 RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTD 200
ILN V L +E+ +V+AI+G SGSGK+T ++ + E GQI +G P
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR-- 74
Query: 201 LDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYG--CPKDVKNEDIEWAAKQAYVHEFILSL 257
++ + +V Q+ LL + ++ + Y K+ D A ++ V E +L
Sbjct: 75 -KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSD---AIRKKRV-EDVLLR 129
Query: 258 PCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 315
+ + + +SGG+++R++IA +L DP +L+LDE TS LDS + ++ L
Sbjct: 130 DLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTAL---NLVSTL 186
Query: 316 RNDCKTKRTVIVIAH--RLSTIKAVDRIVVIDDGRIIEVG 353
+ R VI+ H R + DRI+++ G I+ G
Sbjct: 187 SQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.2 bits (226), Expect = 6e-21
Identities = 65/225 (28%), Positives = 112/225 (49%), Gaps = 12/225 (5%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++ N+S+ YP P L ++ L I+ E + I+G +GSGKST L L P G++
Sbjct: 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 192 YIDGFPLTDLD-IRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 248
+ G D ++ +R+ +G V Q P Q + ++ ++ +G P+++ IE +
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG-PENLCLPPIEIRKR-- 116
Query: 249 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 308
V + + LSGGQ Q +A+A + +P L+ DE TS LD +S
Sbjct: 117 -VDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG--- 172
Query: 309 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 353
VL ++ + +T++ I H L + DRI+V+D G+I+ G
Sbjct: 173 IAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEG 217
|
Length = 274 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.2 bits (226), Expect = 6e-21
Identities = 71/243 (29%), Positives = 125/243 (51%), Gaps = 15/243 (6%)
Query: 136 NISFHYPSRPTVPI--LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 193
N+S+ Y + LN+ LT + N+V ++G +GSGKST + L L GQ +
Sbjct: 11 NVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV 70
Query: 194 DGFPLTD-----LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAK 246
+ + +++ LR++IG V Q P QL Q I+ +I +G P ++ E+ + A K
Sbjct: 71 GDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG-PVNL-GENKQEAYK 128
Query: 247 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306
+ ++ LP Y +L SGGQK+R+A+A I D L+LDE T LD + E
Sbjct: 129 KVPELLKLVQLPEDYVKRSPFEL-SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEE 187
Query: 307 YVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKGRLY 365
+ R + + K+ +I++ H + + + D ++V+ +G++I +G+ E+ L
Sbjct: 188 DFINLF--ERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELL 245
Query: 366 AKL 368
K+
Sbjct: 246 TKI 248
|
Length = 289 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 92.4 bits (229), Expect = 7e-21
Identities = 61/218 (27%), Positives = 100/218 (45%), Gaps = 19/218 (8%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--DGQIYIDGFPLTDLDIRWL 206
+L+ + L IEA E++A++G SG GK+T + + + + G+I I LT
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH-- 77
Query: 207 REKIGFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCG 260
+ + + Q L + ++ N+ +G PK E + A K + + LP
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQ 137
Query: 261 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 320
LSGG +QRIAIARAI +P +LLLDE SALD+ ++ + AL +
Sbjct: 138 ---------LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELP 188
Query: 321 TKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 358
+ V + + D+ ++ DGR+ G L
Sbjct: 189 ELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 7e-21
Identities = 73/242 (30%), Positives = 113/242 (46%), Gaps = 56/242 (23%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----------PSDGQ-IYIDGFP 197
L V + I V A++G SG GKSTF+ L R+ + DGQ IY DG
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 198 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK------------------DVKNE 239
L +L R+++G V Q P I+ NI YG K D ++E
Sbjct: 121 LVEL-----RKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDE 175
Query: 240 DIEWAAKQAYVHEFILSLPCGYETLVDDDL-LSGGQKQRIAIARAILRDPAILLLDEATS 298
+E + +QA + + + + L D+ L LSGGQ+QR+ IAR + DP ++L+DE S
Sbjct: 176 LVERSLRQAALWDEV------NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPAS 229
Query: 299 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAH------RLSTIKAVDRIVVIDDGRIIEV 352
ALD + ++ ++ L + TV+V+ H R+S A V + G ++E
Sbjct: 230 ALDPIATSKIEDLIEELAEE----YTVVVVTHNMQQAARISDQTA----VFLTGGELVEY 281
Query: 353 GN 354
+
Sbjct: 282 DD 283
|
Length = 305 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 9e-21
Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 23/229 (10%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
V+ IS + + +++++ LTI E + ++G SG GK+T + L+ P G+I
Sbjct: 15 VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIEWAA 245
+DG +T + + V Q L M + N+ +G P + A
Sbjct: 72 MLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEAL 129
Query: 246 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305
+ + EF P LSGGQ+QR+AIARA++ P +LLLDE+ SALD +
Sbjct: 130 RMVQLEEFAQRKP---------HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLR 180
Query: 306 HYVKGVLHALRNDCKTKRTVIVIAH-RLSTIKAVDRIVVIDDGRIIEVG 353
++ L AL+ K T + + H + + DRIVV+ DGRI + G
Sbjct: 181 KQMQNELKALQR--KLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227
|
Length = 375 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 1e-20
Identities = 68/215 (31%), Positives = 111/215 (51%), Gaps = 17/215 (7%)
Query: 145 PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDL 201
V L++V L + A E+V++ G +G+GKST + +L +Y P +G+I +G L
Sbjct: 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQAS 74
Query: 202 DIRWLREK-IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI--LSL 257
+IR I + QE L+ ++ + NI G + +++ A + + L L
Sbjct: 75 NIRDTERAGIAIIHQELALVKELSVLENIFLGN-EITPGGIMDYDAMYLRAQKLLAQLKL 133
Query: 258 PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 317
T V + L GQ+Q + IA+A+ + +L+LDE T++L +ESE VL +
Sbjct: 134 DINPATPVGN--LGLGQQQLVEIAKALNKQARLLILDEPTASL-TESE---TAVLLDIIR 187
Query: 318 DCKTKR-TVIVIAHRLSTIKAV-DRIVVIDDGRII 350
D K I I+H+L+ +KA+ D I VI DGR I
Sbjct: 188 DLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI 222
|
Length = 506 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 2e-20
Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 25/238 (10%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYID 194
N F + S+ P L+++ L + +VAIVG +G GK++ ++ +L L SD + I
Sbjct: 619 NGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR 678
Query: 195 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK--NEDIEWAAKQAYVHE 252
G + +V Q + ++ NI++G P D + I+ A Q H+
Sbjct: 679 G-------------TVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQ---HD 722
Query: 253 FILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 310
L LP G T + + +SGGQKQR+++ARA+ + + + D+ SALD+ H +
Sbjct: 723 LDL-LPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDA---HVGRQ 778
Query: 311 VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 368
V D +T +++ ++L + VDRI+++ +G I E G + EL + G L+ KL
Sbjct: 779 VFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKL 836
|
Length = 1622 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 2e-20
Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 17/234 (7%)
Query: 141 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 200
Y + LN++ N +A++G +G+GKST + +P+ G + I G P+T
Sbjct: 11 YSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITK 70
Query: 201 LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYG-CPKDVKNEDIEWAAKQAYVHEFILSL 257
+IR +R+ +G V Q P Q+ ++ +I +G + E + A +H
Sbjct: 71 ENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA-LHML---- 125
Query: 258 PCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 315
G E L D LSGG+K+R+AIA I +P +L+LDE T+ LD + VK ++ L
Sbjct: 126 --GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG---VKELIDFL 180
Query: 316 RNDCKT-KRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYAK 367
+ +T TVI H+L + + D I V+D GRI+ G E+ + L A+
Sbjct: 181 NDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLAR 234
|
Length = 277 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 2e-20
Identities = 74/268 (27%), Positives = 124/268 (46%), Gaps = 60/268 (22%)
Query: 132 VQFVNISFHYPSR-------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 184
+Q +++ HYP + V L+ V T+E + +A+VG SG GKST LL +
Sbjct: 6 LQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE 65
Query: 185 EPSDGQIYIDGFPLTDLD---IRWLREKIGFVGQEP-----------QLLQ--MDIKSNI 228
P+ G++Y G L D + LR+KI V Q P Q+L+ + I +++
Sbjct: 66 TPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSL 125
Query: 229 MYGCPKDVKNEDIEWAAK--------QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280
+ + + + AK Y H F SGGQ+QRIAI
Sbjct: 126 ---SAAERREKALAMMAKVGLRPEHYDRYPHMF-----------------SGGQRQRIAI 165
Query: 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-D 339
ARA++ DP +++ DE SALD + V ++ L+ + + + I+H LS ++ + D
Sbjct: 166 ARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGL--SYVFISHDLSVVEHIAD 223
Query: 340 RIVVIDDGRIIEVGNHAELLHKGRLYAK 367
++V+ GR +E G K +++
Sbjct: 224 EVMVMYLGRCVEKGT------KEQIFNN 245
|
Length = 327 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 92.7 bits (230), Expect = 3e-20
Identities = 66/231 (28%), Positives = 119/231 (51%), Gaps = 30/231 (12%)
Query: 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 207
P LN + +I +VA+VG G GKS+ ++ LL + +G +++ G
Sbjct: 652 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------ 699
Query: 208 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVK--NEDIEWAAKQAYVHEFILSLPCGYETLV 265
+ +V Q+ + ++ NI++G + K + +E A + LP G T +
Sbjct: 700 -SVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLE----ILPSGDRTEI 754
Query: 266 DDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSE-SEH---YVKGVLHALRNDC 319
+ LSGGQKQR+++ARA+ + I L D+ SA+D+ +H +V G L+N
Sbjct: 755 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKN-- 812
Query: 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 370
+T I++ H +S + VD I+V+ G+I E+G++ ELL + +A+ ++
Sbjct: 813 ---KTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLR 860
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 92.3 bits (229), Expect = 3e-20
Identities = 98/377 (25%), Positives = 181/377 (48%), Gaps = 35/377 (9%)
Query: 2 MRTVRVYGTEEKELGRYK-IWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGM 60
M TV+ Y E+ R + I E+L++ R + ++ +N SFI V V G
Sbjct: 489 MDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLS--AFN-SFILNSIPVVVTLVSFGVF 545
Query: 61 SIMIGQVSPEQ-LTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ-F 118
++ G ++P + T L+ ++ + M+ NL S Q + A + ++ +LL S +
Sbjct: 546 VLLGGDLTPARAFTSLSLFA--VLRSPLNMLPNLLS--QVVNANVSLQRIEELLLSEERI 601
Query: 119 LSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN 178
L++ LQ + N F + S+ + P L+ + L I +VAIVG +G GK++ ++
Sbjct: 602 LAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLIS 661
Query: 179 LLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN 238
+L ++ + + IR + +V Q + ++ NI++G D ++
Sbjct: 662 AMLGELSHAET---------SSVVIR---GSVAYVPQVSWIFNATVRENILFG--SDFES 707
Query: 239 EDIEWAAKQAYVHEFILSLPCGYETLVDDDL---LSGGQKQRIAIARAILRDPAILLLDE 295
E W A + L L G + + +SGGQKQR+++ARA+ + I + D+
Sbjct: 708 ERY-WRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDD 766
Query: 296 ATSALDSESEHYV--KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 353
SALD+ H V + L+ +T +++ ++L + +DRI+++ +G I E G
Sbjct: 767 PLSALDAHVAHQVFDSCMKDELKG-----KTRVLVTNQLHFLPLMDRIILVSEGMIKEEG 821
Query: 354 NHAELLHKGRLYAKLVK 370
AEL G L+ KL++
Sbjct: 822 TFAELSKSGSLFKKLME 838
|
Length = 1495 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 3e-20
Identities = 65/212 (30%), Positives = 109/212 (51%), Gaps = 26/212 (12%)
Query: 153 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WL---RE 208
V LT+ A + AI G SG+GK++ +N + L P G+I ++G L D + L +
Sbjct: 17 VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76
Query: 209 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF--ILSLPCGYETLV 265
+IG+V Q+ +L ++ N+ YG + +F I++L G E L+
Sbjct: 77 RIGYVFQDARLFPHYKVRGNLRYGM----AKSMVA---------QFDKIVAL-LGIEPLL 122
Query: 266 D--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 323
D LSGG+KQR+AI RA+L P +LL+DE ++LD + + L L +
Sbjct: 123 DRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIP- 181
Query: 324 TVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGN 354
++ ++H L I + DR+VV++ G++ G
Sbjct: 182 -ILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 3e-20
Identities = 57/216 (26%), Positives = 105/216 (48%), Gaps = 19/216 (8%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209
+ V + E+ ++G +G+GK+T + +L L +P+ G+ + G + + R +R +
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRR 74
Query: 210 IGFVGQEPQL-LQMDIKSNI-----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 263
IG V Q+ + ++ N+ +YG P + E I+ + E L Y
Sbjct: 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTY-- 132
Query: 264 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 323
SGG ++R+ IAR+++ P +L LDE T LD ++ +V + L+ +
Sbjct: 133 -------SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM-- 183
Query: 324 TVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 358
T+++ H + + + DR+ +ID GRII G EL
Sbjct: 184 TILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 4e-20
Identities = 73/261 (27%), Positives = 109/261 (41%), Gaps = 56/261 (21%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL------YE 185
++ ++++FH TV + + IEA E +A+VG SGSGKS +L L
Sbjct: 9 IRNLSVAFHQEGG-TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAH 67
Query: 186 PSDGQIYIDGFPLTDLDIRWLR----EKIGFVGQEP------------QLLQMDIKSNIM 229
PS G I DG L R LR KIG + QEP QL ++ +
Sbjct: 68 PS-GSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGL 126
Query: 230 YGCPKDVKNEDIEW----------AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279
+ +E AY HE LSGGQ+QR+
Sbjct: 127 SR--AAARARALELLELVGIPEPEKRLDAYPHE-----------------LSGGQRQRVM 167
Query: 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV- 338
IA A+ +P +L+ DE T+ALD + + +L L+ + ++ I H L ++
Sbjct: 168 IAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQA--ELGMAILFITHDLGIVRKFA 225
Query: 339 DRIVVIDDGRIIEVGNHAELL 359
DR+ V+ G I+E G L
Sbjct: 226 DRVYVMQHGEIVETGTTETLF 246
|
Length = 534 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.8 bits (220), Expect = 5e-20
Identities = 70/246 (28%), Positives = 119/246 (48%), Gaps = 35/246 (14%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++ ++++Y L + + I+ EV AI+G +G+GKST L + +PS G+I
Sbjct: 6 LKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 192 YIDGFPL--TDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGC-----PKDVKNEDIE 242
DG P+ + + LRE +G V Q+P QL + ++ +G P+D + ++
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 243 WAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSAL 300
A K+ G E L D LS GQK+R+AIA ++ +P +L+LDE T+ L
Sbjct: 124 NALKRT-----------GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGL 172
Query: 301 D----SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355
D SE + + L T+I+ H + + D + V+ +GR+I GN
Sbjct: 173 DPMGVSEIMKLLVEMQKEL------GLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 226
Query: 356 AELLHK 361
E+ +
Sbjct: 227 KEVFAE 232
|
Length = 283 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (218), Expect = 5e-20
Identities = 76/226 (33%), Positives = 114/226 (50%), Gaps = 27/226 (11%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL--------TDL 201
LN++ + I N + A++G SG GKSTF+ L R+ + +G I I+G + +
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG-IKIEGNVIYEGKNIYSNNF 81
Query: 202 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP----KDVK--NEDIEWAAKQAYVHEFIL 255
DI LR KIG V Q P M I NI YG KD K +E +E + K++ + +
Sbjct: 82 DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV- 140
Query: 256 SLPCGYETLVDDDL-LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 314
+ L + L LSGGQ+QR+ IAR + +P ++L+DE TSALD S G +
Sbjct: 141 -----KDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPIS----TGKIEE 191
Query: 315 LRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 359
L + K T+I++ H + + DR +G I E + EL
Sbjct: 192 LIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237
|
Length = 254 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (218), Expect = 5e-20
Identities = 73/238 (30%), Positives = 118/238 (49%), Gaps = 23/238 (9%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
NIS Y IL + + I N + I+G SGSGKST + +L RL E D +I +DG
Sbjct: 12 NISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDG 71
Query: 196 FPLT------DLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQA 248
L +D LR+++G V Q+P + I NI Y +K+ I+ +
Sbjct: 72 KVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAY----PLKSHGIKEKREIK 127
Query: 249 YVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
+ E L G V D L LSGGQ+QR+ IARA+ P +LL+DE TS +D
Sbjct: 128 KIVEECLR-KVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI 186
Query: 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 359
+ ++ ++ L+N+ +++++H + V D + + +G ++E G+ E+
Sbjct: 187 VNSQAIEKLITELKNEI----AIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.7 bits (217), Expect = 6e-20
Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 29/234 (12%)
Query: 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS---DGQIYIDGFPLTDL 201
V +L+ V L I N + A++G SGSGKST + + RL E P G++Y+DG + +
Sbjct: 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM 75
Query: 202 DIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKD--VKN-----EDIEWAAKQAYVHEF 253
D+ LR ++ V Q P + + I N+ G + VK+ E + WA ++A + +
Sbjct: 76 DVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDE 135
Query: 254 I---LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 310
+ L P G LSGGQ+QR+ IARA+ P +LL DE T+ LD E+ ++
Sbjct: 136 VKDRLDAPAGK--------LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIES 187
Query: 311 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGR 363
+ L+ D T++++ H + D + + G+I+E G E+ R
Sbjct: 188 LFLELKKD----MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPR 237
|
Length = 250 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 6e-20
Identities = 63/238 (26%), Positives = 121/238 (50%), Gaps = 33/238 (13%)
Query: 135 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 194
N+S Y R ++N V L+++ E+V ++G +G+GK+T +++ L +P G+I +D
Sbjct: 4 ENLSKRYGKRK---VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60
Query: 195 GFPLTDLDI-RWLREKIGFVGQEPQLL-QMDIKSNIM-----YGCPKDVKNEDIEWAAKQ 247
G +T L + + R IG++ QE + ++ ++ NI+ G K + E +E
Sbjct: 61 GQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLE----- 115
Query: 248 AYVHEF-ILSL---PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303
+ EF I L LSGG+++R+ IARA+ +P LLLDE + +D
Sbjct: 116 ELLEEFHITHLRKSKASS--------LSGGERRRVEIARALATNPKFLLLDEPFAGVDPI 167
Query: 304 SEHYVKGVLHALRNDCKTKRTVIVIA-HRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 359
+ ++ ++ L++ + ++I H + T+ DR +I +G+++ G E+
Sbjct: 168 AVQDIQKIIKILKD----RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 7e-20
Identities = 73/246 (29%), Positives = 111/246 (45%), Gaps = 37/246 (15%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
M V N++ Y V I + L I E V VG SG GKST + ++ L + +
Sbjct: 1 MASVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITS 57
Query: 189 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAK 246
G ++I + D+ +G V Q L + + N+ +G K E+I
Sbjct: 58 GDLFIGEKRMNDVPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVN 115
Query: 247 QAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304
Q +L L L+D LSGGQ+QR+AI R ++ +P++ LLDE S LD+
Sbjct: 116 QV---AEVLQL----AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-- 166
Query: 305 EHYVKGVLHALRNDC---------KTKRTVIVIAH-RLSTIKAVDRIVVIDDGRIIEVGN 354
ALR + RT+I + H ++ + D+IVV+D GR+ +VG
Sbjct: 167 ---------ALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
Query: 355 HAELLH 360
EL H
Sbjct: 218 PLELYH 223
|
Length = 369 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 9e-20
Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 49/226 (21%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL 206
IL V LTI+ EV A++G +GSGKST ++ YE ++G+I G +TDL
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE-E 73
Query: 207 REKIG-FVG-QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 264
R ++G F+ Q P + VKN D F+ + G
Sbjct: 74 RARLGIFLAFQYPPEIPG-------------VKNAD------------FLRYVNEG---- 104
Query: 265 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRT 324
SGG+K+R I + +L +P + +LDE S LD ++ V V++ LR + ++
Sbjct: 105 -----FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE---GKS 156
Query: 325 VIVIAHR---LSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 367
V++I H L IK DR+ V+ DGRI++ G+ EL + K
Sbjct: 157 VLIITHYQRLLDYIKP-DRVHVLYDGRIVKSGD-KELAL--EIEKK 198
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.3 bits (216), Expect = 9e-20
Identities = 75/230 (32%), Positives = 116/230 (50%), Gaps = 28/230 (12%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT---DLD--- 202
+L V L A +V++I+G SGSGKSTF+ + L +PS+G I ++G + D D
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 203 -------IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDV----KNEDIEWAAKQAYV 250
+R LR ++ V Q L M + N+M P V K E E A K Y+
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-PIQVLGLSKQEARERAVK--YL 136
Query: 251 HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 310
+ + + V LSGGQ+QR++IARA+ +P +LL DE TSALD E V
Sbjct: 137 AKVGIDERAQGKYPVH---LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE---LVGE 190
Query: 311 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 359
VL ++ + +T++V+ H + + V ++ + G+I E G +L
Sbjct: 191 VLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240
|
Length = 257 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 9e-20
Identities = 57/214 (26%), Positives = 106/214 (49%), Gaps = 16/214 (7%)
Query: 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 207
LN + L I + V ++G +G+GKST +N + +P+ GQI IDG +T +
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79
Query: 208 EKIGFVGQEPQL---LQMDIKSNIMYGCPKDVKNEDIEW-----AAKQAYVHEFILSLPC 259
+ V Q+P ++ I+ N+ + + + +++ E + L
Sbjct: 80 NLLARVFQDPLAGTAPELTIEENLALA---ESRGKKRGLSSALNERRRSSFRERLARLGL 136
Query: 260 GYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 317
G E + D LLSGGQ+Q +++ A L P ILLLDE T+ALD ++ +V + +
Sbjct: 137 GLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVE 196
Query: 318 DCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRII 350
+ K T +++ H + + +R++++ G+I+
Sbjct: 197 --EHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 1e-19
Identities = 60/204 (29%), Positives = 104/204 (50%), Gaps = 11/204 (5%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208
+L ++ +I + V ++G +GSGKST ++ LRL ++G I IDG + ++ R+
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRK 77
Query: 209 KIGFVGQEPQLLQMDIKSNI-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVD 266
G + Q+ + + N+ YG D E+I A++ + I P + LVD
Sbjct: 78 AFGVIPQKVFIFSGTFRKNLDPYGKWSD---EEIWKVAEEVGLKSVIEQFPGQLDFVLVD 134
Query: 267 DD-LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV 325
+LS G KQ + +AR++L ILLLDE ++ LD + ++ L DC TV
Sbjct: 135 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADC----TV 190
Query: 326 IVIAHRLSTIKAVDRIVVIDDGRI 349
I+ HR+ + R +VI++ ++
Sbjct: 191 ILSEHRIEAMLECQRFLVIEENKV 214
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 1e-19
Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 24/228 (10%)
Query: 144 RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 203
R TV + + T+ + +AI+G +GSGKST +L + EP+ G++ ID PL D
Sbjct: 23 RQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82
Query: 204 RWLREKIGFVGQEP-----------QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE 252
+ ++I + Q+P Q+L ++ N D++ E E +
Sbjct: 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN------TDLEPEQREKQIIETLRQV 136
Query: 253 FILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 312
+L Y +L+ GQKQR+ +ARA++ P +++ DEA ++LD + ++
Sbjct: 137 GLLPDHASYYP----HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLM 192
Query: 313 HALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 359
L+ K + I + L +K + D+++V+ G ++E G+ A++L
Sbjct: 193 LELQE--KQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 1e-19
Identities = 69/238 (28%), Positives = 116/238 (48%), Gaps = 35/238 (14%)
Query: 136 NISFHYPS------RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 189
+S HY +LN+V L++++ E VA++G SG GKST LL+ L PS G
Sbjct: 8 GLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG 67
Query: 190 QIYIDGFPLTDLD---IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE------D 240
+ G PL L+ + R I V Q+ + ++ + + +++ E
Sbjct: 68 NVSWRGEPLAKLNRAQRKAFRRDIQMVFQDS-ISAVNPRKTV-----REIIREPLRHLLS 121
Query: 241 IEWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLD 294
++ A + A E + ++ L D L LSGGQ QR+ +ARA+ +P +L+LD
Sbjct: 122 LDKAERLARASEMLRAV-----DLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILD 176
Query: 295 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIE 351
EA S LD + V +L L+ + + I H L + + R++V+D+G+I+E
Sbjct: 177 EAVSNLDLVLQAGVIRLLKKLQQ--QFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.5 bits (216), Expect = 1e-19
Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 29/240 (12%)
Query: 135 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-- 192
VN++ + + +L+ V + A V +++G +GSGK+TF+ L R+ + G Y
Sbjct: 25 VNLTLGFAGKT---VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSG 81
Query: 193 ---IDGFPLTDL-DIRWLREKIGFVGQEPQLLQMDIKSNIMYG--CPKDVKNEDIEWAAK 246
+ G + + D+ R ++G + Q P M I N++ G K V ++ A
Sbjct: 82 DVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA- 140
Query: 247 QAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSAL 300
QA + E G V D L LSGGQ+Q + +AR + +P +LLLDE TSAL
Sbjct: 141 QARLTE------VGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSAL 194
Query: 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 359
D + ++ + +L + + TVI++ H L+ + DR + DGR++E G +L
Sbjct: 195 DPTTTEKIEEFIRSLAD----RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250
|
Length = 276 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 1e-19
Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 8/215 (3%)
Query: 138 SFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 197
S V L + TIE E+V +G +G+GK+T + +L L +P+ G++ + G
Sbjct: 25 SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLV 84
Query: 198 LTDLDIRWLREKIGFV-GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 256
++LR +IG V GQ+ QL D+ + + D+ A + + E
Sbjct: 85 PWKRRKKFLR-RIGVVFGQKTQLW-WDLPVIDSFYLLAAIY--DLPPARFKKRLDELSEL 140
Query: 257 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 316
L LS GQ+ R IA A+L +P IL LDE T LD ++ ++ L
Sbjct: 141 LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN 200
Query: 317 NDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 350
+ T TV++ +H + I+A+ R++VID GR++
Sbjct: 201 RERGT--TVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 1e-19
Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 35/214 (16%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS---DGQ 190
N++ +Y S V +V L I N++ A +G SG GKST + RL + P +G+
Sbjct: 15 NLNVYYGSFLAV---KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGK 71
Query: 191 IYIDGFPLTDLDIR--WLREKIGFVGQEPQLLQMDIKSNIMYGCP----KDVKNEDIEWA 244
+ G L D+ +R +IG V Q+P I NI YG K +E +E +
Sbjct: 72 VTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERS 131
Query: 245 AKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATS 298
+QA + + V D L LSGGQ+QR+ IARAI P ++L+DE S
Sbjct: 132 LRQAALWD-----------EVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCS 180
Query: 299 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 332
ALD S ++ ++H L K + T+I++ H +
Sbjct: 181 ALDPISTLRIEELMHEL----KEQYTIIIVTHNM 210
|
Length = 264 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 85.8 bits (212), Expect = 2e-19
Identities = 59/211 (27%), Positives = 109/211 (51%), Gaps = 13/211 (6%)
Query: 145 PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY----IDGFPLTD 200
+ L+++ + I ++ IVG G GKS+ + +L + +G+++ + P +
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 201 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 260
R + + Q+P LL ++ NI +G P + + + I LP G
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGSP--FNKQRYKAVTDACSLQPDIDLLPFG 129
Query: 261 YETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSE-SEHYVK-GVLHALR 316
+T + + LSGGQ+QRI +ARA+ ++ I+ LD+ SALD S+H ++ G+L L+
Sbjct: 130 DQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ 189
Query: 317 NDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG 347
+D KRT++++ H+L + D I+ + DG
Sbjct: 190 DD---KRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 2e-19
Identities = 70/218 (32%), Positives = 112/218 (51%), Gaps = 26/218 (11%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
+S Y R +LN + L I A + VA+VG SG GKST + LL L PS G++
Sbjct: 17 AVSKRYGERT---VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGT 73
Query: 196 FPLTDLDIRWLREKIGFVGQEPQLLQMD-IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 254
PL + RE + Q+ +LL + N+ G ++ AA QA
Sbjct: 74 APLAEA-----REDTRLMFQDARLLPWKKVIDNVGLGLKGQWRD-----AALQALA---- 119
Query: 255 LSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 312
G ++ LSGGQKQR+A+ARA++ P +LLLDE ALD+ + ++ ++
Sbjct: 120 ---AVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLI 176
Query: 313 HALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 349
+L + TV+++ H +S A+ DR+++I++G+I
Sbjct: 177 ESLWQ--QHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 2e-19
Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 28/205 (13%)
Query: 165 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMD 223
++G SG GK+T + LL +P G I +DG +T++ I V Q L M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH--LRHINMVFQSYALFPHMT 58
Query: 224 IKSNIMYGCPKD-VKNEDIEWAAKQAY--VH--EFILSLPCGYETLVDDDLLSGGQKQRI 278
++ N+ +G V +I+ +A V EF P LSGGQ+QR+
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQ---------LSGGQQQRV 109
Query: 279 AIARAILRDPAILLLDEATSALD----SESEHYVKGVLHALRNDCKTKRTVIVIAHRLS- 333
A+ARA++ P ILLLDE SALD + + +K + L T + + H
Sbjct: 110 ALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL------GITFVFVTHDQEE 163
Query: 334 TIKAVDRIVVIDDGRIIEVGNHAEL 358
+ DRI ++ G+I ++G E+
Sbjct: 164 AMTMSDRIAIMRKGKIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 3e-19
Identities = 56/226 (24%), Positives = 104/226 (46%), Gaps = 19/226 (8%)
Query: 141 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-LT 199
R + + V + A E+V I G++G+G+S V + L +P+ G+I ++G L
Sbjct: 266 KDRRGVTAVKD-VSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLG 324
Query: 200 DLDIRWLREK-IGFVGQEPQ----LLQMDIKSNIMYGC---PKDVKNEDIEWAAKQAYVH 251
L R R + +V ++ +L + + N++ G + ++ A + +
Sbjct: 325 RLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR 384
Query: 252 EFILSL---PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 308
E I + LSGG +Q++ +AR + R P +L+ + T LD + ++
Sbjct: 385 ELIEEFDVRAPSPDAPA--RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFI 442
Query: 309 KGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
L LR+ K V++I+ L I + DRI VI +GRI+ +
Sbjct: 443 HERLLELRDAGK---AVLLISEDLDEILELSDRIAVIYEGRIVGIV 485
|
Length = 501 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 3e-19
Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 27/237 (11%)
Query: 143 SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 202
+L+ V L++ +V +VG +G+GK+T + + P+ G + + G + L
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 203 IRWLREKIGFVGQEPQL-LQMDIKSNIMYG-CPK----DVKNED----IEWAAKQAYVHE 252
R ++ V Q+ L + D++ + G P D E +E A ++ V +
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ 131
Query: 253 FILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 310
F D + LSGG++QR+ +ARA+ + +LLLDE T++LD H V+
Sbjct: 132 F-----------ADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD--INHQVR- 177
Query: 311 VLHALRNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYA 366
L +R +T + H L + D +V++ DGR+ G A++L L A
Sbjct: 178 TLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRA 234
|
Length = 402 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.2 bits (212), Expect = 3e-19
Identities = 60/229 (26%), Positives = 110/229 (48%), Gaps = 25/229 (10%)
Query: 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RW 205
+ L V L +E E+VA++G +G+GK+T + ++ L P G+I DG +T L
Sbjct: 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER 75
Query: 206 LREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE-F-----ILSLP 258
R I +V + ++ ++ ++ N++ G + + V+E F +
Sbjct: 76 ARLGIAYVPEGRRIFPRLTVEENLLLGA--YARRDKEAQERDLEEVYELFPRLKERRNQR 133
Query: 259 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR-- 316
G LSGG++Q +AIARA++ P +LLLDE + L + V+ + A++
Sbjct: 134 AGT--------LSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIKEL 182
Query: 317 NDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRL 364
+ T++++ + DR V+++GRI+ G AELL +
Sbjct: 183 RK-EGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDV 230
|
Length = 237 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 4e-19
Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 12/237 (5%)
Query: 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--DGQIYIDGFPLTDLDIR 204
V L+ + L + E V + G +G+GKST + +L +Y DG+IY G PL +IR
Sbjct: 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIR 73
Query: 205 WLREK-IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI--LSLPCG 260
I + QE L+ ++ + NI G + + + A + L L
Sbjct: 74 DTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDAD 133
Query: 261 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 320
T D GGQ+Q + IA+A+ + +L+LDE +S+L +E E + +L +R+
Sbjct: 134 NVTRPVGD-YGGGQQQLVEIAKALNKQARLLILDEPSSSL-TEKE--TEILLDIIRDLKA 189
Query: 321 TKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTESL 376
+ I+H+L+ +KAV D I VI DG+ + + + + +V R+ SL
Sbjct: 190 HGVACVYISHKLNEVKAVCDTICVIRDGQHVAT-KDMSTMSEDDIITMMVGREITSL 245
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 4e-19
Identities = 68/206 (33%), Positives = 108/206 (52%), Gaps = 4/206 (1%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208
+LN + L I + ++VA++G SGSGK+T + ++ L + G I G ++ L R
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR--DR 74
Query: 209 KIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 267
K+GFV Q L + M + NI +G + E AA +A V + + + +
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP 134
Query: 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 327
LSGGQKQR+A+ARA+ +P ILLLDE ALD++ ++ L L + K +V V
Sbjct: 135 AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFT-SVFV 193
Query: 328 IAHRLSTIKAVDRIVVIDDGRIIEVG 353
+ ++ DR+VV+ G I + G
Sbjct: 194 THDQEEAMEVADRVVVMSQGNIEQAG 219
|
Length = 353 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 4e-19
Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 29/226 (12%)
Query: 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 207
ILN + L++ ++ A++G +G GKST + RL P G +++ P++ L R L
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75
Query: 208 EKIGFVGQEPQLLQMDIKSN--IMYG-----------CPKDVKNEDIEWAAKQAYVHEFI 254
++ + Q L I + YG +D N + A +Q ++
Sbjct: 76 RRLALLPQHH-LTPEGITVRELVAYGRSPWLSLWGRLSAED--NARVNQAMEQTRINHLA 132
Query: 255 LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 314
+ + D LSGGQ+QR +A + +D ++LLDE T+ LD + + ++
Sbjct: 133 -------DRRLTD--LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRE 183
Query: 315 LRNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 359
L K TV+ + H L+ + D +VV+ +G ++ G E++
Sbjct: 184 LNTQGK---TVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 5e-19
Identities = 68/220 (30%), Positives = 107/220 (48%), Gaps = 27/220 (12%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTD--LD 202
L + ++I N V A++G SG GKST + R+ + G I +G + D D
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-----KDVKNED--IEWAAKQAYVHEFIL 255
+ LR KIG V Q P I N+ YG P K+ K D +E + K A + + +
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYG-PRIHGEKNKKTLDTIVEKSLKGAALWDEV- 139
Query: 256 SLPCGYETLVDDDL-LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 314
+ L D L LSGGQ+QR+ IAR + +P ++L+DE SALD + ++ ++
Sbjct: 140 -----KDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED 194
Query: 315 LRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
L+ + TVI++ H + V D + G++IE
Sbjct: 195 LKKE----YTVIIVTHNMQQAARVSDYTGFMYLGKLIEFD 230
|
Length = 253 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 6e-19
Identities = 72/238 (30%), Positives = 120/238 (50%), Gaps = 28/238 (11%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV---NLLLRLYEPS- 187
++ VN+ +Y S ++ V L I N V A++G SG GKST + N LL L E +
Sbjct: 5 IETVNLRVYYGSNH---VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEAR 61
Query: 188 -DGQIYIDGFPL--TDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGC-------PKDV 236
+G++ + G + D+D +R ++G V Q P + I N+ G K
Sbjct: 62 VEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE 121
Query: 237 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 296
+E +EWA K+A + + + Y + LSGGQ+QR+ IARA+ P ILL+DE
Sbjct: 122 LDERVEWALKKAALWDEVKDRLNDYPSN-----LSGGQRQRLVIARALAMKPKILLMDEP 176
Query: 297 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
T+ +D ++ +L L+ + T++++ H + V D + + G++IEVG
Sbjct: 177 TANIDPVGTAKIEELLFELKKE----YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 7e-19
Identities = 75/236 (31%), Positives = 114/236 (48%), Gaps = 27/236 (11%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
N+SF P R +L+ + LT A +V ++G +GSGKST + +L R PS+G+I +D
Sbjct: 16 NVSFRVPGRT---LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA 72
Query: 196 FPLTDLDIRWLREKIGFVGQE-PQLLQMDIKSNIMYGCPKDVKNEDIEW--------AAK 246
PL + K+ ++ Q+ P M ++ + G W AA
Sbjct: 73 QPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIG--------RYPWHGALGRFGAAD 124
Query: 247 QAYVHEFI--LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304
+ V E I + L LVD LSGG++QR IA + +D LLLDE TSALD
Sbjct: 125 REKVEEAISLVGLKPLAHRLVDS--LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182
Query: 305 EHYVKGVLHALRNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 359
+ V ++H L + TVI + H ++ + D +V + G +I G AEL+
Sbjct: 183 QVDVLALVHRLSQ--ERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 8e-19
Identities = 78/258 (30%), Positives = 117/258 (45%), Gaps = 58/258 (22%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 184
M ++ + Y + ++ + L + E + +VG SG GKST LLR L
Sbjct: 1 MAGLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKST----LLRMVAGLE 54
Query: 185 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKN 238
+ G+I+I G + +L+ R+ I V Q L M ++ N+ YG PK
Sbjct: 55 RITSGEIWIGGRVVNELEPA-DRD-IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIE 112
Query: 239 EDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEA 296
E + AA+ IL L E L+D LSGGQ+QR+A+ RAI+R+PA+ L DE
Sbjct: 113 ERVAEAAR-------ILEL----EPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEP 161
Query: 297 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR-LST---------IKAV---DRIVV 343
S LD+ LR R I HR L T ++A+ DR+VV
Sbjct: 162 LSNLDA-----------KLRV---QMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVV 207
Query: 344 IDDGRIIEVGNHAELLHK 361
++ G ++G E+ K
Sbjct: 208 MNGGVAEQIGTPVEVYEK 225
|
Length = 356 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 8e-19
Identities = 71/238 (29%), Positives = 123/238 (51%), Gaps = 24/238 (10%)
Query: 129 MGHVQFVNISFHYPSRPTV--PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 186
MG + N+S+ Y + L V LTIE A +G +GSGKST + LL L+ P
Sbjct: 1 MG-INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP 59
Query: 187 SDGQIYIDGFPLT----DLDIRWLREKIGFVGQ--EPQLLQMDIKSNIMYGCPKD--VKN 238
+ G + +D +T + DI+ +R+K+G V Q E QL + + ++ +G P++ V
Sbjct: 60 TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFG-PQNFGVSQ 118
Query: 239 EDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEA 296
E+ E A++ L+L E+L + + LSGGQ +R+AIA + +P IL+LDE
Sbjct: 119 EEAEALAREK------LALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEP 172
Query: 297 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVG 353
T+ LD + + + L T++++ H + + D + V++ G+++ G
Sbjct: 173 TAGLDPKGRKELMTLFKKLHQS---GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSG 227
|
Length = 280 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 1e-18
Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 27/198 (13%)
Query: 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID-GFPLTDL----- 201
P+L +V LT+ A E VA+ G SG+GKST + L Y P G+I + DL
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 202 -DIRWLREK-IGFVGQ----EPQLLQMDI--KSNIMYGCPKDVKNEDIEWAAKQAYVHEF 253
++ +R K IG+V Q P++ +++ + + G P++ + + E
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPER 141
Query: 254 ILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 313
+ LP SGG++QR+ IAR + D ILLLDE T++LD+ + V ++
Sbjct: 142 LWHLP--------PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI- 192
Query: 314 ALRNDCKTKRTVIV-IAH 330
+ K + ++ I H
Sbjct: 193 ---AEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 2e-18
Identities = 63/231 (27%), Positives = 105/231 (45%), Gaps = 15/231 (6%)
Query: 143 SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 202
S I++ V +T + ++G +GSGKST + LL P G + + G L L
Sbjct: 10 SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS 69
Query: 203 IRWLREKIGFVGQE-PQLLQMDIKSNIMYG-CPKDVKNEDIEWAAKQAYVHEFILSL--P 258
R ++ V Q+ + + ++ + G P WA + +
Sbjct: 70 RRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSL-----WAGDSPHDAAVVDRALAR 124
Query: 259 CGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 316
L D D+ LSGG++QR+ +ARA+ ++P +LLLDE T+ LD ++ L +R
Sbjct: 125 TELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQL---ETLALVR 181
Query: 317 NDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYA 366
T TV+ H L+ + D +VV+D GR++ G E+L + A
Sbjct: 182 ELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALIRA 232
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 2e-18
Identities = 66/224 (29%), Positives = 113/224 (50%), Gaps = 20/224 (8%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT----DLDIRW 205
L V ++I + VAI+G +GSGKST + L L +P+ G + I +T + ++
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 206 LREKIGFVGQ--EPQLLQMDIKSNIMYGCPKD--VKNEDIEWAAKQAYVHEFILSLPCGY 261
LR+K+G V Q E QL + ++ +I +G P + V ED + A++ ++ LP
Sbjct: 83 LRKKVGIVFQFPEHQLFEETVEKDICFG-PMNFGVSEEDAKQKAREMI---ELVGLP--- 135
Query: 262 ETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319
E L+ LSGGQ +R+AIA + +P +L+LDE T+ LD + + + + L
Sbjct: 136 EELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK-- 193
Query: 320 KTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362
+ T +++ H + D+IVV+ G + G E+
Sbjct: 194 EKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADP 237
|
Length = 290 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 2e-18
Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 15/231 (6%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
+ +S Y + V N + T+ + E ++G +G+GKST ++L + P G+I
Sbjct: 42 IDLAGVSKSYGDKAVV---NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQL-LQMDIKSN-IMYGCPKDVKNEDIEWAAKQAY 249
+ G P+ R R +IG V Q L L+ ++ N +++G + +IE A
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIE--AVIPS 155
Query: 250 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309
+ EF L + V D LSGG K+R+ +ARA++ DP +L+LDE T+ LD + H +
Sbjct: 156 LLEFA-RLESKADARVSD--LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW 212
Query: 310 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 359
L +L K T+++ H + + + DR+ V++ GR I G L+
Sbjct: 213 ERLRSLLARGK---TILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260
|
Length = 340 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 2e-18
Identities = 65/203 (32%), Positives = 99/203 (48%), Gaps = 36/203 (17%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS---DGQIYIDGFPLTD--LD 202
L ++ L I NEV AI+G SG GKST++ L R+ E PS G+I + D
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-------KDVKNEDIEWAAKQAYVHEFIL 255
+ LR +G V Q+P I N+ YG P K +E +E + + A + +
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYG-PKIHGIKDKKTLDEIVEKSLRGAAIWD--- 155
Query: 256 SLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309
+ D L LSGGQ+QR+ IAR + +P ++L+DE TSALD S V+
Sbjct: 156 --------ELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVE 207
Query: 310 GVLHALRNDCKTKRTVIVIAHRL 332
++ L K ++I++ H +
Sbjct: 208 ELVQEL----KKDYSIIIVTHNM 226
|
Length = 271 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 3e-18
Identities = 58/217 (26%), Positives = 111/217 (51%), Gaps = 21/217 (9%)
Query: 143 SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 202
S V L V LT+ E+ A++G +G+GKST + +L ++EP+ G I I+ LD
Sbjct: 14 SFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD 73
Query: 203 IRWLRE-KIGFVGQEPQLL-QMDIKSNIMYG-------CPKDVKNEDIEWAA--KQAYVH 251
+ + IG + QE ++ ++ + N+ G C ++ I+W +A +
Sbjct: 74 HKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNI----IDWREMRVRAAMM 129
Query: 252 EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 311
+ L + V + LS KQ + IA+ ++ D ++++DE TS+L ++ Y+ +
Sbjct: 130 LLRVGLKVDLDEKVAN--LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI 187
Query: 312 LHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDG 347
++ LR + ++ I+H+L+ I+ + DR V+ DG
Sbjct: 188 MNQLRKEGT---AIVYISHKLAEIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 3e-18
Identities = 66/275 (24%), Positives = 109/275 (39%), Gaps = 32/275 (11%)
Query: 79 CEWLIY-----ATWRMV-DNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHV 132
W I A WR L+ Q++ A + D + +
Sbjct: 339 LSWFIDNYDAIADWRATLLRLAEFRQALEAAQM-----DTEKPARTGRRIDFDDNADHGI 393
Query: 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 192
N+S P T +L+ + + E + I G SG+GK++ + L L+ G+I
Sbjct: 394 TLENLSLRTPDGQT--LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI- 450
Query: 193 IDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY-GCPKDVKNEDIEWAAKQAYVH 251
P + F+ Q P L Q ++ + Y D + ++ + +
Sbjct: 451 --SMPAD--------SALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLG 500
Query: 252 EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 311
+ L E D +LSGG++QR+A AR +L P + LDEATSALD E+E +
Sbjct: 501 DLAERLD---EEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDR---L 554
Query: 312 LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346
L+ + TVI + HR + R + + D
Sbjct: 555 YQLLKEELPDA-TVISVGHRPTLWNFHSRQLELLD 588
|
Length = 604 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 3e-18
Identities = 68/219 (31%), Positives = 116/219 (52%), Gaps = 25/219 (11%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-- 206
++ ++ T+ E + +VG SGSGKST LLRL S G+I+ DG PL +L+ R L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLP 359
Query: 207 -REKIGFVGQEPQLL---QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE 262
R +I V Q+P ++++ I G V + A ++ V + E
Sbjct: 360 VRHRIQVVFQDPNSSLNPRLNVLQIIEEGL--RVHQPTLSAAQREQQVIAVM------EE 411
Query: 263 TLVDDDL-------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 315
+D + SGGQ+QRIAIARA++ P++++LDE TS+LD + + +L +L
Sbjct: 412 VGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSL 471
Query: 316 RNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
+ K + + I+H L ++A+ +++V+ G ++E G
Sbjct: 472 QQ--KHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQG 508
|
Length = 529 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 4e-18
Identities = 80/252 (31%), Positives = 120/252 (47%), Gaps = 44/252 (17%)
Query: 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS- 187
HV N S +Y V +N I + V AI+G SG GKSTF+ + R+ + PS
Sbjct: 39 HVVAKNFSIYYGEFEAVKKVN---ADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSC 95
Query: 188 --DGQIYIDG----FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-----DV 236
G + DG TD + LR+KIG V Q+P I NI YG P+ D
Sbjct: 96 HTTGALMFDGEDIYGKFTDEVL--LRKKIGMVFQKPNPFPKSIFDNIAYG-PRLHGINDK 152
Query: 237 K--NEDIEWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDP 288
K E +E + ++A + + V D L LSGGQ+QR+ +AR + +P
Sbjct: 153 KQLEEIVEKSLRKAALWD-----------EVSDRLDKNALGLSGGQQQRLCVARTLAVEP 201
Query: 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDG 347
ILLLDE TSALD ++ ++ ++ LR T++++ H + V D + +G
Sbjct: 202 EILLLDEPTSALDPKATAKIEDLIQELRG----SYTIMIVTHNMQQASRVSDYTMFFYEG 257
Query: 348 RIIEVGNHAELL 359
++E A+L
Sbjct: 258 VLVEHAPTAQLF 269
|
Length = 286 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 4e-18
Identities = 62/230 (26%), Positives = 115/230 (50%), Gaps = 28/230 (12%)
Query: 144 RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 203
R TV + V T+ + +AI+G +GSGKST +L + EP+ G+I I+ PL D
Sbjct: 23 RQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82
Query: 204 RWLREKIGFVGQEP-----------QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE 252
+ ++I + Q+P Q+L ++ N + + + I + +
Sbjct: 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQ--RRKQIFETLRMVGL-- 138
Query: 253 FILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 312
LP +L+ GQKQR+A+ARA++ P I++ DEA ++LD ++ L
Sbjct: 139 ----LP--DHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMS----MRSQL 188
Query: 313 HALRNDCKTKRTV--IVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 359
L + + K+ + I + + IK + D+++V+ +G ++E G+ A++L
Sbjct: 189 INLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 4e-18
Identities = 67/238 (28%), Positives = 110/238 (46%), Gaps = 29/238 (12%)
Query: 140 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFP 197
H IL V LT++ EV AI+G +GSGKST ++ YE ++G+I DG
Sbjct: 10 HVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGED 69
Query: 198 LTDLDI--RWLREKIGFVGQEP---------QLLQMDIKSNIMYGCPKDVKNEDIEWAAK 246
+ +L R R I Q P L+ + + ++++ A+
Sbjct: 70 ILELSPDER-ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAE 128
Query: 247 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306
+ E L ++ SGG+K+R I + +L +P + +LDE S LD ++
Sbjct: 129 LLGLDEEFLERYV-------NEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALK 181
Query: 307 YVKGVLHALRNDCKTKRTVIVIAHR---LSTIKAVDRIVVIDDGRIIEVGNHAELLHK 361
V ++ALR + R V++I H L IK D++ V+ DGRI++ G+ EL +
Sbjct: 182 IVAEGINALREE---GRGVLIITHYQRLLDYIKP-DKVHVLYDGRIVKSGD-PELAEE 234
|
Length = 251 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 6e-18
Identities = 67/240 (27%), Positives = 119/240 (49%), Gaps = 28/240 (11%)
Query: 141 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 200
+ P V +L V +++ ++ ++G +GSGKST + LL +E S+G++
Sbjct: 668 FELEPKV-LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV--------- 717
Query: 201 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 260
W I +V Q+ ++ ++ NI++ +D + A + + + + L G
Sbjct: 718 ----WAERSIAYVPQQAWIMNATVRGNILFFDEEDA--ARLADAVRVSQLEADLAQLGGG 771
Query: 261 YETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSE-SEHYVKGV-LHALR 316
ET + + LSGGQK R+++ARA+ + + LLD+ SALD+ E V+ L AL
Sbjct: 772 LETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALA 831
Query: 317 NDCKTKRTVIVIA-HRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTES 375
KT+ V+A H++ + D +V + DGR+ G+ A+ + LYA L E+
Sbjct: 832 --GKTR----VLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRTS-LYATLAAELKEN 884
|
Length = 1560 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 6e-18
Identities = 66/227 (29%), Positives = 110/227 (48%), Gaps = 24/227 (10%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
N+ F P+L ++ L IE E++AI G +GSGK++ + L+L EPS+G+I G
Sbjct: 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG 98
Query: 196 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 255
+I F Q ++ IK NI++G D + K + E I
Sbjct: 99 -------------RISFSSQFSWIMPGTIKENIIFGVSYD--EYRYKSVVKACQLEEDIT 143
Query: 256 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGV 311
P T++ + LSGGQ+ RI++ARA+ +D + LLD LD +E E + V
Sbjct: 144 KFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCV 203
Query: 312 LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 358
+ N +T I++ ++ +K D+I+++ +G G +EL
Sbjct: 204 CKLMAN-----KTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 7e-18
Identities = 76/302 (25%), Positives = 133/302 (44%), Gaps = 36/302 (11%)
Query: 60 MSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQL-----IDLLP 114
+++ +G S VL +L V L +LL + A K+ +L P
Sbjct: 253 LALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFP 312
Query: 115 SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKS 174
Q + L+ N+ F Y + + LTI+ E+V ++G +GSGKS
Sbjct: 313 RPQAFPDWKTLE-------LRNVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKS 363
Query: 175 TFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE----PQLLQMDIKSNIMY 230
T LL LY+P G+I +DG P++ + R+ V + QLL + K++
Sbjct: 364 TLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKAS--- 420
Query: 231 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 290
P+ ++ +W + H+ SL G + + LS GQK+R+A+ A+L + I
Sbjct: 421 --PQLIE----KWLQRLELAHK--TSLNDGRFSNLK---LSTGQKKRLALLLALLEERDI 469
Query: 291 LLLDEATSALDSESEHYVKGVLHALRNDCKTK-RTVIVIAHRLSTIKAVDRIVVIDDGRI 349
L+LDE + D + + L K + +T+ I+H DR++ + +G++
Sbjct: 470 LVLDEWAADQDP---AFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQL 526
Query: 350 IE 351
E
Sbjct: 527 SE 528
|
Length = 546 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 8e-18
Identities = 68/235 (28%), Positives = 108/235 (45%), Gaps = 46/235 (19%)
Query: 151 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK- 209
+ V L + E + +VG SG GKSTF ++ L + +DG++ G L + R
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVR 97
Query: 210 --IGFVGQEPQLLQMDIKSNI---------MYGCPK----DVKNEDIEWAAK-------- 246
I + Q+P L ++ + I Y PK +VK+ K
Sbjct: 98 SDIQMIFQDP-LASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLI 155
Query: 247 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306
Y HEF SGGQ QRI IARA++ +P +++ DE SALD +
Sbjct: 156 NRYPHEF-----------------SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQA 198
Query: 307 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 360
V +L L+ + ++I IAH L+ +K + DR++V+ G +E+G + E+ H
Sbjct: 199 QVVNLLQQLQREMGL--SLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYH 251
|
Length = 331 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 1e-17
Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 21/218 (9%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-R 207
IL V L + EV ++G +G GK+T + L+ L G I +DG +T L R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 208 EKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 266
I +V Q ++ ++ ++ N++ G + + + I L + L +
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGLAA--------LPRRSRKIPDEIYEL---FPVLKE 123
Query: 267 -----DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT 321
LSGGQ+Q++AIARA++ P +LLLDE T + + V+ LR +
Sbjct: 124 MLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE--G 181
Query: 322 KRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 358
++++ L + + DR V++ GR++ G EL
Sbjct: 182 GMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.6 bits (201), Expect = 1e-17
Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 40/240 (16%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
++F+Y L ++ + + +V A++G SG GKSTF+ R+++ G Y
Sbjct: 21 KLNFYYGGYQA---LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGE 77
Query: 196 FPL---------TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP------KDVKNED 240
L ++D +R +I V Q+P I N+ YG + + E
Sbjct: 78 IILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEER 137
Query: 241 IEWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLD 294
+E A + A + + V D L LSGGQ+QR+ IARA+ DP ILL D
Sbjct: 138 VENALRNAALWD-----------EVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFD 186
Query: 295 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
E TSALD + ++ ++ L+N K T++++ H + V D + G +IE G
Sbjct: 187 EPTSALDPIATASIEELISDLKN----KVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242
|
Length = 265 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 1e-17
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 27/217 (12%)
Query: 152 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRWLR 207
+ L+++ EV+A+VG SGSGKS +L L P + G+I +DG PL L IR
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR- 62
Query: 208 EKIGFVGQEPQ-----LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI-LSLPCGY 261
I + Q P+ L M ++ + K A+ + + LP
Sbjct: 63 -HIATIMQNPRTAFNPLFTM--GNHAIETLRSLGKLSK---QARALILEALEAVGLPDPE 116
Query: 262 ETLVDDDL----LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 317
E L LSGG QR+ IA A+L +P L+ DE T+ LD ++ V +L LR
Sbjct: 117 EVL---KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 318 DCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVG 353
T +++I H L + + D + V+DDGRI+E G
Sbjct: 174 LFGT--GILLITHDLGVVARIADEVAVMDDGRIVERG 208
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 1e-17
Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 26/221 (11%)
Query: 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 207
++ V LTI E+ A++G SG GKST + +L +P+ GQI +DG L+ + +
Sbjct: 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQ 90
Query: 208 EKIGFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCGY 261
I + Q L M ++ NI +G PK + ++ EF P
Sbjct: 91 RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP--- 147
Query: 262 ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE----SEHYVKGVLHALRN 317
LSGGQ+QR+A+AR++ + P +LLLDE ALD + + V +L +
Sbjct: 148 ------HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGV 201
Query: 318 DCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 358
C V+V + + RI +++ G+ +++G E+
Sbjct: 202 TC-----VMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
Length = 377 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 1e-17
Identities = 68/255 (26%), Positives = 117/255 (45%), Gaps = 26/255 (10%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
++ F I +P V L+ + A +V A++G +G+GKST + +L Y+P
Sbjct: 2 SPYLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA 58
Query: 189 GQIYIDGFPLTDLDIR-WLREKIGFVGQEPQLL-QMDIKSNIMYG-CPKDV----KNEDI 241
G I IDG + L + + QE L+ +M + N+ G P +
Sbjct: 59 GSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN 118
Query: 242 EWAAKQ-AYVHEFI-LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 299
A +Q ++ I P Y LS GQ+Q + IA+A+ R+ ++ DE TS+
Sbjct: 119 YEAREQLEHLGVDIDPDTPLKY--------LSIGQRQMVEIAKALARNARVIAFDEPTSS 170
Query: 300 LDS-ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAE 357
L + E E + V+ LR + R ++ ++HR+ I A+ D I V DGR + +
Sbjct: 171 LSAREIEQLFR-VIRELRAE---GRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMA 226
Query: 358 LLHKGRLYAKLVKRQ 372
+ + +L +V R+
Sbjct: 227 QVDRDQLVQAMVGRE 241
|
Length = 501 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 2e-17
Identities = 70/210 (33%), Positives = 114/210 (54%), Gaps = 18/210 (8%)
Query: 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 214
LTI+ +V ++G SG GK+T + L+ L +P++GQI+IDG +T I+ + I V
Sbjct: 27 LTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDICMVF 84
Query: 215 QEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLP--CGYET-LVDDDL 269
Q L M + N+ YG V E+ + K+A L L G+E VD
Sbjct: 85 QSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEA------LELVDLAGFEDRYVDQ-- 136
Query: 270 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 329
+SGGQ+QR+A+ARA++ P +LL DE S LD+ ++ + L+ + T + +
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQ--QFNITSLYVT 194
Query: 330 HRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 358
H S AV D ++V++ G+I+++G+ EL
Sbjct: 195 HDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 2e-17
Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 33/208 (15%)
Query: 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 192
Q ++ Y +P L + LT+E+ E++ ++G SG GK+T +NL+ G I
Sbjct: 3 QISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIT 59
Query: 193 IDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKNEDIEWAAKQA-- 248
+DG P+ E+ G V Q LL +++ N+ +G V+ A Q
Sbjct: 60 LDGKPVEGPGA----ER-GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLK 114
Query: 249 ------YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
+I L SGGQ+QR+ IARA+ +P +LLLDE ALD+
Sbjct: 115 KVGLEGAEKRYIWQL-------------SGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
Query: 303 ESEHYVKGVLHALRNDCKTKRTVIVIAH 330
+ ++ +L L+ +T + V++I H
Sbjct: 162 FTREQMQTLL--LKLWQETGKQVLLITH 187
|
Length = 255 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 3e-17
Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 43/246 (17%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS---DGQ 190
N++ Y + V +V I +V A++G SG GKST + L R+ + G+
Sbjct: 18 NVTISYGTFEAV---KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGR 74
Query: 191 IYIDGFPLTD--LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP----KDVKNEDIEWA 244
+ DG L D +D +R +IG V Q+P I NI +G +E +E +
Sbjct: 75 VLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERS 134
Query: 245 AKQAYVHEFILSLPC-------GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 297
++A V + C GY LSGGQ+QR+ IAR I +P ++L+DE
Sbjct: 135 LRKAAVWD-----ECKDKLNESGYS-------LSGGQQQRLCIARTIAIEPEVILMDEPC 182
Query: 298 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAH------RLSTIKAVDRIVVIDDGRIIE 351
SALD S ++ +H L+ + T++++ H R+S + A ++ G +
Sbjct: 183 SALDPISTLKIEETMHELKKNF----TIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGK 238
Query: 352 VGNHAE 357
VG E
Sbjct: 239 VGYLVE 244
|
Length = 269 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 3e-17
Identities = 58/223 (26%), Positives = 111/223 (49%), Gaps = 31/223 (13%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRW 205
+L +V + E++A++G SG+GK+T +N L G + ++G P+ D +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI---DAKE 96
Query: 206 LREKIGFVGQEPQLL-QMDIKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILSL--- 257
+R +V Q+ + + ++ ++M+ P+ V ++ K+ V E + +L
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKE-----KRERVDEVLQALGLR 151
Query: 258 PC-----GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 312
C G V LSGG+++R+A A +L DP +L DE TS LDS + V+
Sbjct: 152 KCANTRIGVPGRVKG--LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYS---VV 206
Query: 313 HALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDDGRIIEVG 353
L+ + +T+I H+ S+ + D+I+++ +GR+ +G
Sbjct: 207 QVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLG 249
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 3e-17
Identities = 63/233 (27%), Positives = 113/233 (48%), Gaps = 37/233 (15%)
Query: 134 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 193
F N S + P+L ++ +E +++A+ G +GSGKS+ + +++ EPS+G+I
Sbjct: 431 FSNFSLY-----VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKH 485
Query: 194 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEW----AAKQAY 249
G +I F Q ++ IK NI++G D E+ K
Sbjct: 486 SG-------------RISFSPQTSWIMPGTIKDNIIFGLSYD------EYRYTSVIKACQ 526
Query: 250 VHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESE 305
+ E I P +T++ + LSGGQ+ RI++ARA+ +D + LLD + LD +E E
Sbjct: 527 LEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKE 586
Query: 306 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 358
+ + + N +T I++ +L +K D+I+++ +G G +EL
Sbjct: 587 IFESCLCKLMSN-----KTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 4e-17
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 12/208 (5%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208
++N + TI E ++G +G+GKST +LL + P G+I + G P+ R R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-RARLARV 77
Query: 209 KIGFVGQEPQL-LQMDIKSNIM-YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 266
IG V Q L + ++ N++ +G + +IE + EF L + V
Sbjct: 78 AIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPS--LLEFA-RLESKADVRVA 134
Query: 267 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 326
LSGG K+R+ +ARA++ DP +L+LDE T+ LD + H + L +L +T++
Sbjct: 135 L--LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL---LARGKTIL 189
Query: 327 VIAHRLSTI-KAVDRIVVIDDGRIIEVG 353
+ H + + DR+ V++ GR I G
Sbjct: 190 LTTHFMEEAERLCDRLCVLESGRKIAEG 217
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.3 bits (195), Expect = 5e-17
Identities = 73/264 (27%), Positives = 120/264 (45%), Gaps = 45/264 (17%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS-- 187
V+ ++ H+ V V + N V AI+G SG GKST + + R+++ PS
Sbjct: 5 VKLEQLNVHFGKNHAV---KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSAR 61
Query: 188 -DGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG------CPKDVK 237
G+I +D + D +D +R ++G V Q+P M I N++ G +
Sbjct: 62 VTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEA 121
Query: 238 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAIL 291
+E +E + K+ + + V D L LSGGQ+QR+ IAR I P ++
Sbjct: 122 DEIVESSLKRVALWD-----------EVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVI 170
Query: 292 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 350
L+DE SALD S ++ ++ L K K T+I++ H + V D G ++
Sbjct: 171 LMDEPASALDPISTLKIEELIEEL----KEKYTIIIVTHNMQQAARVSDYTAFFYMGDLV 226
Query: 351 EVGNHAELLHKGRLYAKLVKRQTE 374
E G +++ K+QTE
Sbjct: 227 ECG------ETKKIFTTPEKKQTE 244
|
Length = 252 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 7e-17
Identities = 51/193 (26%), Positives = 93/193 (48%), Gaps = 26/193 (13%)
Query: 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 215
+I +EV+ I+G +G GK+TF+ +L + +P +G DI + + +
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG------------DIEIELDTVSY--- 65
Query: 216 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGG 273
+PQ ++ D + + +D+ + + Y I P E ++D ++ LSGG
Sbjct: 66 KPQYIKADYEGTV-----RDLLSSITKDFYTHPYFKTEIAK-PLQIEQILDREVPELSGG 119
Query: 274 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 333
+ QR+AIA + +D I LLDE ++ LD E V+ R ++T V+ H +
Sbjct: 120 ELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR--RFAENNEKTAFVVEHDII 177
Query: 334 TIKAV-DRIVVID 345
I + DR++V +
Sbjct: 178 MIDYLADRLIVFE 190
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 1e-16
Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 15/210 (7%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLRE 208
+ V T+ A E++ I GL G+G++ L S G+I +DG P+ R ++
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334
Query: 209 KIGFVGQEPQ----LLQMDIKSNI-MYGCPKDVKNEDIEWAAKQAYVHEFILSL---PCG 260
I +V ++ + +L M I NI + + + I+ ++A +I L
Sbjct: 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394
Query: 261 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 320
E + LSGG +Q++ +AR + DP +L+LDE T +D ++ + ++ L
Sbjct: 395 PEQPIG--TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL---AA 449
Query: 321 TKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 349
+ +++I+ L + + DRI+V+ +GRI
Sbjct: 450 EGKAILMISSELPELLGLSDRILVMREGRI 479
|
Length = 500 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-16
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 19/164 (11%)
Query: 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 207
+ + + T+ A E + I G +G+GK+T + +L L P G++Y G P+ +
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQN-VRESYH 74
Query: 208 EKIGFVGQEPQL-LQMDIKSNI-----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 261
+ + ++G +P + ++ N+ +G N W A + LP G
Sbjct: 75 QALLYLGHQPGIKTELTALENLHFWQRFHGS----GNAATIWEALAQVGLAGLEDLPVGQ 130
Query: 262 ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305
LS GQ++R+A+AR L + +LDE +ALD E
Sbjct: 131 --------LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV 166
|
Length = 209 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 1e-16
Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 11/157 (7%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRW 205
+L +V TI E+V ++G SG GKST ++ ++ G+++++ L L
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA- 75
Query: 206 LREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 264
+ +IG + Q+ L + + N+++ P +K AA A +
Sbjct: 76 -QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQ---- 130
Query: 265 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 301
D LSGGQ+ R+A+ RA+L P LLLDE S LD
Sbjct: 131 -DPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 1e-16
Identities = 59/223 (26%), Positives = 122/223 (54%), Gaps = 24/223 (10%)
Query: 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWL 206
++N V L + + E+V ++G +G+GK+T +++ L P G+I +D +T L + +
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77
Query: 207 REKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQ----AYVHEFILSLPCGY 261
R IG++ QE + ++ ++ NIM +++ +D++ A ++ A + EF +
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIM--AVLEIREKDLKKAERKEELDALLEEFHI------ 129
Query: 262 ETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319
L D LSGG+++R+ IARA+ +P +LLDE + +D + ++ ++ L++
Sbjct: 130 THLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-- 187
Query: 320 KTKRTV-IVIA-HRL-STIKAVDRIVVIDDGRIIEVGNHAELL 359
R + ++I H + T+ DR +I DG+++ G+ E++
Sbjct: 188 ---RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227
|
Length = 243 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (192), Expect = 1e-16
Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 37/236 (15%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-------- 200
+L ++ + ++ AI+G SG GKST + L R+ + G ++G L D
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA-RLEGAVLLDNENIYSPN 77
Query: 201 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYG------CPKDVKNEDIEWAAKQAYVHEFI 254
LD+ LR+++G V Q+P I N+ +G + +E +E + +QA + +
Sbjct: 78 LDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWD-- 135
Query: 255 LSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 308
V D+L LSGGQ+QR+ IAR + +P ++L+DE SALD S +
Sbjct: 136 ---------EVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRI 186
Query: 309 KGVLHALRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELLHKGR 363
+ ++ L K T+ ++ H + +A D + G ++E G E+ + R
Sbjct: 187 EELMQEL----KQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPR 238
|
Length = 251 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-16
Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 34/231 (14%)
Query: 131 HVQFVNISF--HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
+V V+ +F H +P+L +V L++ A E V + G SGSGKST + L Y P +
Sbjct: 6 NVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDE 65
Query: 189 GQIYID----------GFPLTDLDIRWLREKIGFVGQ----EPQLLQMDIKSN--IMYGC 232
GQI + P L++R R IG+V Q P++ +D+ + + G
Sbjct: 66 GQILVRHEGEWVDLVTAEPREVLEVR--RTTIGYVSQFLRVIPRVSALDVVAEPLLARGV 123
Query: 233 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 292
P++V + + E + SL SGG++QR+ IAR + D ILL
Sbjct: 124 PREVARAKAADLLTRLNLPERLWSLAPA--------TFSGGEQQRVNIARGFIVDYPILL 175
Query: 293 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV-IAHRLSTIKAV-DRI 341
LDE T++LD+ + + V+ L + K + +V I H +AV DR+
Sbjct: 176 LDEPTASLDATN----RAVVVELIREAKARGAALVGIFHDEEVREAVADRL 222
|
Length = 235 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-16
Identities = 60/234 (25%), Positives = 98/234 (41%), Gaps = 43/234 (18%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208
+L+ V L + EV+AI+G +G+GKST + L P G++ ++G PL L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 209 KIGFVGQEPQL---------LQMDIKSNIMYGCPKDVKNEDIEWAAK-------QAYVHE 252
+ Q L +QM I + ++ ED AA+
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQM---GRIPHRSGRE-PEEDERIAAQALAATDLSGLAGR 131
Query: 253 FILSLPCGYETLVDDDLLSGGQKQRIAIAR------AILRDPAILLLDEATSALDSESEH 306
+L SGG++QR+ +AR + L LDE TSALD +H
Sbjct: 132 DYRTL-------------SGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQH 178
Query: 307 YVKGVLHALRNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 359
+ + L + V+ + H L+ + DRIV++ GR+I G+ ++L
Sbjct: 179 HTLRLARQL---AREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 2e-16
Identities = 63/207 (30%), Positives = 107/207 (51%), Gaps = 13/207 (6%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL------D 202
+L++V +I E++AIVG SGSGKST ++LL L P+ G + +G P++ L +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE 262
+R +K+GF+ Q LL D + P + + +A E + ++ +
Sbjct: 84 LR--NQKLGFIYQFHHLLP-DFTALENVAMPLLIGKKKPAEINSRA--LEMLAAVGLEHR 138
Query: 263 TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK 322
LSGG++QR+AIARA++ +P ++L DE T LD+ + + +L L T
Sbjct: 139 ANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGT- 197
Query: 323 RTVIVIAHRLSTIKAVDRIVVIDDGRI 349
+V+ H L K + R + + DGR+
Sbjct: 198 -AFLVVTHDLQLAKRMSRQLEMRDGRL 223
|
Length = 233 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 2e-16
Identities = 58/199 (29%), Positives = 86/199 (43%), Gaps = 51/199 (25%)
Query: 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 207
+L + I+ + + I G SG+GKS+ L L+ G+I +
Sbjct: 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPE-----------G 63
Query: 208 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 267
E + F+ Q P L ++ ++Y P W D
Sbjct: 64 EDLLFLPQRPYLPLGTLREQLIY--P---------W-----------------------D 89
Query: 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 327
D+LSGG++QR+A AR +L P + LDEATSALD ESE + +L L TVI
Sbjct: 90 DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL------GITVIS 143
Query: 328 IAHRLSTIKAVDRIVVIDD 346
+ HR S K DR++ +D
Sbjct: 144 VGHRPSLWKFHDRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (190), Expect = 3e-16
Identities = 67/247 (27%), Positives = 116/247 (46%), Gaps = 35/247 (14%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQ 190
+++ +Y + V +N L ++ V A++G SG GK+TF+ + R+++ + G+
Sbjct: 9 DVNIYYGDKQAVKNVN---LDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGR 65
Query: 191 IYIDGFPLTD--LDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP----------KDVK 237
I +DG + +D +R ++G V Q+P M + N++ G +V
Sbjct: 66 ILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVA 125
Query: 238 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 297
+ AA V + + + G LSGGQ+QR+ IARA+ +P ILL+DE T
Sbjct: 126 ERSLRGAALWDEVKDRLKTPATG---------LSGGQQQRLCIARALAVEPEILLMDEPT 176
Query: 298 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHA 356
SALD S ++ ++ D K T+I++ H + V D G ++E G
Sbjct: 177 SALDPASTARIEDLM----TDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTD 232
Query: 357 ELLHKGR 363
+L R
Sbjct: 233 QLFTNPR 239
|
Length = 252 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 6e-16
Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 16/216 (7%)
Query: 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 206
V +L + T+ A EV A++G +G+GKST + ++ + P G + I G P L
Sbjct: 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPA-K 82
Query: 207 REKIG--FVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 263
++G V QEP L + +K NI++G PK A + + + +L C +
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPKR--------QASMQKMKQLLAALGCQLDL 134
Query: 264 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 323
L +Q + I R ++RD IL+LDE T++L + + L
Sbjct: 135 DSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA---QGV 191
Query: 324 TVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 358
++ I+H+L I+ + DRI V+ DG I G A+L
Sbjct: 192 GIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 6e-16
Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 11/208 (5%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW--- 205
IL V L ++ E +A++G SGSGKST + +L L + S G++ + G PL +D
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 206 LREK-IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 263
LR K +GFV Q L+ ++ N+ P ++ E + A + L G
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVEL--PALLRGESSRQSRNGAK--ALLEQLGLGKRL 140
Query: 264 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 323
LSGG++QR+A+ARA P +L DE T LD ++ + +L +L + T
Sbjct: 141 DHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGT-- 198
Query: 324 TVIVIAHRLSTIKAVDRIVVIDDGRIIE 351
T+I++ H L DR + + +G++ E
Sbjct: 199 TLILVTHDLQLAARCDRRLRLVNGQLQE 226
|
Length = 228 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 8e-16
Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 14/227 (6%)
Query: 138 SFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 197
F + ++ + + I E+V +G +G+GKST + +L L P+ G++ ++G
Sbjct: 28 HFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD 87
Query: 198 LTDLDIRWLREKIGFV-GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 256
+LR IG V GQ+ QL D+ + K + +I +
Sbjct: 88 PFRRREEYLR-SIGLVMGQKLQLW-WDLPALDSLEVLKLIY--EIPDDEFAERLDFLTEI 143
Query: 257 LPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 314
L E + + LS GQ+ R +A A+L P +L LDE T LD ++ +
Sbjct: 144 L--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ---ANIREF 198
Query: 315 LRNDCKTKRTVIVIA-HRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 359
L+ + ++ +++ H I + DR+++ID G+++ G A+L
Sbjct: 199 LKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ 245
|
Length = 325 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 8e-16
Identities = 63/243 (25%), Positives = 120/243 (49%), Gaps = 33/243 (13%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
+ N+S Y ++ +L+ V L I + +I+G +G+GKST ++++ RL + G+I
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQL-LQMDIKSNIMYG-CP----------KDVKNE 239
IDG LT + L +K+ + QE + ++ ++ + +G P + + NE
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118
Query: 240 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 299
IE+ + ++ D LSGGQ+QR IA + +D +LLDE +
Sbjct: 119 AIEYLHLEDLSDRYL-------------DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNN 165
Query: 300 LDSESEHYVKGVLHALRNDCKT-KRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357
LD +H V ++ LR +T++V+ H ++ D IV + +G++++ G+ E
Sbjct: 166 LD--MKHSV-QIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDE 222
Query: 358 LLH 360
++
Sbjct: 223 IIQ 225
|
Length = 252 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 9e-16
Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 15/202 (7%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209
L V LTI+ E ++++G SG GKST +NL+ L +P+ G + ++G +T+ +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM--- 57
Query: 210 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 268
V Q LL + ++ NI D D+ + ++A V E I +
Sbjct: 58 --VVFQNYSLLPWLTVRENIALAV--DRVLPDLSKSERRAIVEEHIALVGLTEAADKRPG 113
Query: 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH-ALRNDCKTKR-TVI 326
LSGG KQR+AIARA+ P +LLLDE ALD+ +G L L + R TV+
Sbjct: 114 QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDA----LTRGNLQEELMQIWEEHRVTVL 169
Query: 327 VIAHRL-STIKAVDRIVVIDDG 347
++ H + + DR+V++ +G
Sbjct: 170 MVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 9e-16
Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 19/216 (8%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL---DIRWL 206
L V + E+ + G SG+GKST + L+ + PS G+I+ G +T L ++ +L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 207 REKIGFVGQEPQLLQMD--IKSNI-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 263
R +IG + Q+ LL MD + N+ + +DI A +L +
Sbjct: 78 RRQIGMIFQDHHLL-MDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPI 136
Query: 264 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE-SEHYVKGVLHALRNDCKTK 322
LSGG++QR+ IARA++ PA+LL DE T LD SE G+L +
Sbjct: 137 Q-----LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSE----GILRLFEEFNRVG 187
Query: 323 RTVIVIAHRLSTIKAVD-RIVVIDDGRIIEVGNHAE 357
TV++ H + I R++ + DG + G E
Sbjct: 188 VTVLMATHDIGLISRRSYRMLTLSDGHLHG-GVGGE 222
|
Length = 222 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-15
Identities = 68/255 (26%), Positives = 113/255 (44%), Gaps = 51/255 (20%)
Query: 117 QFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF 176
+F G +L +L+ ++F N+S Y +L + I+ + +AIVG +G+GKST
Sbjct: 309 RFPPPGKRLGKLV--LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTL 364
Query: 177 VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE--KIGFVGQEPQLLQMD--IKSNIMYGC 232
+ LL P G + + E KIG+ Q L D + + G
Sbjct: 365 LKLLAGELGPLSGTV-------------KVGETVKIGYFDQHRDELDPDKTVLEELSEGF 411
Query: 233 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILR 286
P + E +AY+ F + +D LSGG+K R+ +A+ +L+
Sbjct: 412 PDGD---EQEV---RAYLGRFGFT---------GEDQEKPVGVLSGGEKARLLLAKLLLQ 456
Query: 287 DPAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVI 344
P +LLLDE T+ LD ES L AL + + TV++++H + V RI ++
Sbjct: 457 PPNLLLLDEPTNHLDIES----LEALEEALLD---FEGTVLLVSHDRYFLDRVATRIWLV 509
Query: 345 DDGRIIEVGNHAELL 359
+D G + + L
Sbjct: 510 EDKVEEFEGGYEDYL 524
|
Length = 530 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (187), Expect = 1e-15
Identities = 61/246 (24%), Positives = 126/246 (51%), Gaps = 29/246 (11%)
Query: 132 VQFVNISFHY-PSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 189
++F +++ Y P+ P L + L ++ A++G +GSGKST + L L +P++G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 190 QIYIDGFPLTDL----DIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKD--VKNEDI 241
++ + ++ +I+ +R+K+G V Q P QL + + ++ +G P++ + E
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFG-PQNFGIPKEKA 120
Query: 242 EWAAKQ-----AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 296
E A + EF P +E LSGGQ +R+AIA + +P +L+LDE
Sbjct: 121 EKIAAEKLEMVGLADEFWEKSP--FE-------LSGGQMRRVAIAGILAMEPEVLVLDEP 171
Query: 297 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNH 355
T+ LD ++ + + ++ ++ +TV+++ H + + D + +++ G II G
Sbjct: 172 TAGLDPKARIEMMQLFESIH---QSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228
Query: 356 AELLHK 361
+++ +
Sbjct: 229 SDVFQE 234
|
Length = 288 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 1e-15
Identities = 68/234 (29%), Positives = 112/234 (47%), Gaps = 46/234 (19%)
Query: 151 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-DGFPLTDL------DI 203
++ L IE E+ ++GLSGSGKST + + L S G + + DG D+ +
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 204 RWLR-EKIGFVGQEPQLLQ-MDIKSNI-----MYGCPKDVKNEDI----------EWAAK 246
R LR ++ V Q+ LL ++ N+ M G PK + + + +WA +
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWADR 160
Query: 247 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306
E LSGG +QR+ +ARA + ILL+DE SALD
Sbjct: 161 --KPGE-----------------LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRT 201
Query: 307 YVKGVLHALRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELL 359
++ L L++ K K+T++ ++H L +K +RI +++ GRII+ G E++
Sbjct: 202 QLQDELLELQS--KLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-15
Identities = 63/261 (24%), Positives = 115/261 (44%), Gaps = 38/261 (14%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL--LRLYEPSDGQI-----------YID- 194
+L ++ TIE EV+ I+G SG+GKS +++L + YEP+ G+I Y++
Sbjct: 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74
Query: 195 ----GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI---------MYGCPKDVKN--- 238
G P E++ F +L + I+ I +YG + N
Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRR-RIRKRIAIMLQRTFALYGDDTVLDNVLE 133
Query: 239 --EDIEWAAKQAY--VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 294
E+I + K+A + I + + LSGG+KQR+ +AR + ++P + L D
Sbjct: 134 ALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLAD 193
Query: 295 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVG 353
E T LD ++ V L + ++++ +H I D+ + +++G I E G
Sbjct: 194 EPTGTLDPQTAKLVHNALEEAVKA--SGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEG 251
Query: 354 NHAELLHKGRLYAKLVKRQTE 374
E++ V+++ E
Sbjct: 252 TPDEVVAVFMEGVSEVEKECE 272
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-15
Identities = 62/246 (25%), Positives = 127/246 (51%), Gaps = 27/246 (10%)
Query: 132 VQFVNISFHYPS--RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 189
++ N+S Y S R V +++V L ++ E+ IVG SG+GK+T ++ + EP+ G
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 190 QIYI----DGFPLTDL--DIRWLREK-IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDI 241
++ + + +T D R ++ IG + QE L + N+ ++ +E
Sbjct: 340 EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDE-- 397
Query: 242 EWAAKQAYVHEFILSLPCGY-----ETLVDD--DLLSGGQKQRIAIARAILRDPAILLLD 294
A+ V + G+ E ++D D LS G++ R+A+A+ ++++P I++LD
Sbjct: 398 --LARMKAVITLKMV---GFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILD 452
Query: 295 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
E T +D ++ V + R + ++T I+++H + + V DR ++ DG+I+++G
Sbjct: 453 EPTGTMDPITKVDVTHSILKAREE--MEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510
Query: 354 NHAELL 359
+ E++
Sbjct: 511 DPEEIV 516
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-15
Identities = 61/225 (27%), Positives = 99/225 (44%), Gaps = 27/225 (12%)
Query: 134 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 193
N++F Y + + LTI+ E++ ++G +GSGKST LL LY+P G+I +
Sbjct: 325 LRNVTFAYQDNGFS--VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382
Query: 194 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIE-WAAKQAYVHE 252
DG P+T R+ V + L ++ K +E W + H+
Sbjct: 383 DGKPVTAEQPEDYRKLFSAVFTDFHLFD-----QLLGPEGKPANPALVEKWLERLKMAHK 437
Query: 253 FILSLPCGYETLVDDDL----LSGGQKQRIAIARAILRDPAILLLDEATSALDSE--SEH 306
L D + LS GQK+R+A+ A+ + ILLLDE + D E
Sbjct: 438 L---------ELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREF 488
Query: 307 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 351
Y +L L+ K T+ I+H DR++ + +G++ E
Sbjct: 489 YQV-LLPLLQEMGK---TIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 2e-15
Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 43/216 (19%)
Query: 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLDIRWLREKIGFVGQEP 217
E +++VG SGSGKST LLRL E G+I +G L+ ++ LR I F+ Q+P
Sbjct: 351 ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDP 410
Query: 218 QLLQMDIKSNIMYGC----------PKDVKNEDIEWAAKQA---------YVHEFILSLP 258
+D + + P + W ++ Y HEF
Sbjct: 411 -YASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEF----- 464
Query: 259 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318
SGGQ+QRI IARA+ +P +++ DEA SALD + +L L+ D
Sbjct: 465 ------------SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD 512
Query: 319 CKTKRTVIVIAHRLSTIKAVD-RIVVIDDGRIIEVG 353
+ I+H ++ ++ + R+ V+ G+I+E+G
Sbjct: 513 FGI--AYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
Length = 623 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 2e-15
Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 45/218 (20%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208
+N++ LT+ N V ++G +G+GKST + ++ + P+ G+I DG P T D+
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLH---- 70
Query: 209 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 268
KIG + + P L + N+ A + VH +L LP ++ +D+
Sbjct: 71 KIGSLIESPPLYE-----NLT--------------ARENLKVHTTLLGLP---DSRIDEV 108
Query: 269 L---------------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 313
L S G KQR+ IA A+L P +L+LDE T+ LD ++ ++
Sbjct: 109 LNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIR 168
Query: 314 ALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 350
+ + TVI+ +H LS ++ + D I +I +G +
Sbjct: 169 SFP---EQGITVILSSHILSEVQQLADHIGIISEGVLG 203
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 77.3 bits (190), Expect = 3e-15
Identities = 70/293 (23%), Positives = 137/293 (46%), Gaps = 30/293 (10%)
Query: 92 NLSSLLQSIGATEKVFQLIDL--------------LPSNQFLSEGVKLQRLM---GHVQF 134
++ L++S+ +VF+ IDL S + E Q+ G +
Sbjct: 1164 DVDGLMRSV---SRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDV 1220
Query: 135 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 194
++ Y +L + ++E + V ++G +GSGKST ++ LLRL ++G+I ID
Sbjct: 1221 QGLTAKYTEAGRA-VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQID 1278
Query: 195 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 254
G + ++ R+ G + Q+ + + N+ + +E+I A++ + I
Sbjct: 1279 GVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNL--DPYEQWSDEEIWKVAEEVGLKSVI 1336
Query: 255 LSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 312
P + ++ D +LS G KQ + +AR+IL ILLLDE ++ LD + ++ L
Sbjct: 1337 EQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTL 1396
Query: 313 HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLY 365
++C TVI+ HR+ + + +VI+ + + + +LL++ L+
Sbjct: 1397 KQSFSNC----TVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLF 1445
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 3e-15
Identities = 52/216 (24%), Positives = 103/216 (47%), Gaps = 21/216 (9%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209
L+ V + +V +G +G+GKST + ++ P G + + G + ++
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-VQRN 76
Query: 210 IGFVGQE-PQLLQMDIKSNI-----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 263
IG++ + P L M ++ + +YG + + +E E I + E
Sbjct: 77 IGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVE---------EMIELVGLRPEQ 127
Query: 264 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 323
LS G +QR+ +A+A++ DP +L+LDE T+ LD ++ V+ + D +
Sbjct: 128 HKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD----K 183
Query: 324 TVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 358
T+I+ H + ++A+ DR+++I+ G+I+ EL
Sbjct: 184 TIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (181), Expect = 6e-15
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 41/233 (17%)
Query: 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPL--TDLDIRWLREK 209
I NE+ +G SG GKST + L R+ + +G ++ G + +D +R
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 210 IGFVGQEPQLLQMDIKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 265
IG V Q+P M I N+ +G K + ++ A + A + + V
Sbjct: 91 IGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWD-----------EV 139
Query: 266 DDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319
D L LSGGQ+QR+ IARAI +P +LLLDE SALD + V+ ++ L+ D
Sbjct: 140 KDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKD- 198
Query: 320 KTKRTVIVIAH------RLSTIKAVDRIVVIDDGR---IIEVGNHAELLHKGR 363
T+ ++ H R++ A + + R ++E+G A++ R
Sbjct: 199 ---YTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNPR 248
|
Length = 261 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-14
Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 34/194 (17%)
Query: 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG--FV 213
I EV+ I+G +G GK+TFV LL + +P +G DL + + + I +
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE-------EDLKVSYKPQYISPDYD 415
Query: 214 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI--LSLPCGYETLVDDDLLS 271
G LL+ I+S + E + L+L E VD+ LS
Sbjct: 416 GTVEDLLRSAIRSAFG----------------SSYFKTEIVKPLNLEDLLERPVDE--LS 457
Query: 272 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV-KGVLHALRNDCKTKRTVIVIAH 330
GG+ QR+AIA A+ R+ + LLDE ++ LD E V K + + N ++T +V+ H
Sbjct: 458 GGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIEN---NEKTALVVDH 514
Query: 331 RLSTIKAV-DRIVV 343
+ I V DR++V
Sbjct: 515 DIYMIDYVSDRLIV 528
|
Length = 591 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 1e-14
Identities = 66/247 (26%), Positives = 126/247 (51%), Gaps = 26/247 (10%)
Query: 120 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 179
++G ++R++GH IS ILN V E++A++G SGSGKST +N
Sbjct: 56 NKGSNIKRILGHKP--KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNA 113
Query: 180 LL-RLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGC---- 232
L R+ + G I + T ++ + GFV Q+ L + ++ +++ C
Sbjct: 114 LAGRIQGNNFTGTILANNRKPTKQILK----RTGFVTQDDILYPHLTVRETLVF-CSLLR 168
Query: 233 -PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLL---SGGQKQRIAIARAILRDP 288
PK + ++ A ++ + E L+ C T++ + + SGG+++R++IA +L +P
Sbjct: 169 LPKSLTKQEKILVA-ESVISELGLT-KCE-NTIIGNSFIRGISGGERKRVSIAHEMLINP 225
Query: 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDD 346
++L+LDE TS LD+ + + + L +L K T++ H+ S+ + D ++V+ +
Sbjct: 226 SLLILDEPTSGLDATAAYRLVLTLGSLAQKGK---TIVTSMHQPSSRVYQMFDSVLVLSE 282
Query: 347 GRIIEVG 353
GR + G
Sbjct: 283 GRCLFFG 289
|
Length = 659 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 1e-14
Identities = 62/198 (31%), Positives = 93/198 (46%), Gaps = 34/198 (17%)
Query: 153 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDLDIRW-- 205
V L I A +++A +G SG GKST + R+ + +G++ + D I
Sbjct: 39 VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVK 98
Query: 206 LREKIGFVGQEPQLLQMDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCG 260
LR ++G V Q P I NI + P K +E +E + ++A + E
Sbjct: 99 LRRQVGMVFQRPNPFPKSIYENIAFA-PRANGYKGNLDELVEDSLRRAAIWE-------- 149
Query: 261 YETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 314
V D L LSGGQ+QR+ IARAI P +LL+DE SALD S V+ +
Sbjct: 150 ---EVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE 206
Query: 315 LRNDCKTKRTVIVIAHRL 332
L K + T+I++ H +
Sbjct: 207 L----KEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-14
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 29/217 (13%)
Query: 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 214
L+ + E++ ++G +G+GK+T + +L L P+ G + + G IG+V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASP-----GKGWRHIGYVP 55
Query: 215 QEPQL---LQMDIKSNIMYGC---------PKDVKNEDIEWAAKQAYVHEFILSLPCGYE 262
Q + + + +M G P + A ++ + E + P G
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTE-LADRPVGE- 113
Query: 263 TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK 322
LSGGQ+QR+ +ARA+ P++LLLDE + LD ++ + + L
Sbjct: 114 -------LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA---G 163
Query: 323 RTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 359
+++ H L+ A VV+ +GR+I G +L
Sbjct: 164 TAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-14
Identities = 61/233 (26%), Positives = 106/233 (45%), Gaps = 38/233 (16%)
Query: 151 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--------- 201
N+V L + E+V+++G +G+GK+T N L Y+P+ G I + G + L
Sbjct: 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81
Query: 202 ------DIRWLREKIG----FVGQEPQLLQMDIKSNIMYGCPK-----DVKNEDIEWAAK 246
+R RE V Q QL K+ + G K ++E ++ AA
Sbjct: 82 VVRTFQHVRLFREMTVIENLLVAQHQQL-----KTGLFSGLLKTPAFRRAESEALDRAA- 135
Query: 247 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306
E + L + L+ GQ++R+ IAR ++ P IL+LDE + L+ +
Sbjct: 136 --TWLERVGLLEHANRQAGN---LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETK 190
Query: 307 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 358
+ ++ LRN+ TV++I H + + + DRI V++ G + G E+
Sbjct: 191 ELDELIAELRNEHNV--TVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241
|
Length = 255 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 5e-14
Identities = 51/209 (24%), Positives = 111/209 (53%), Gaps = 17/209 (8%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209
++++ + E+ ++G +G+GK+T ++L L EP++G+I +G PL+ + ++ +
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKNR 73
Query: 210 IGFVGQEPQLLQ-MDIKSNIMY-GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET-LVD 266
IG++ +E L M ++ + Y K + +I+ QA++ + G +T +
Sbjct: 74 IGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKL-QAWLERLEIV---GKKTKKIK 129
Query: 267 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 326
+ LS G +Q+I A++ +P +L+LDE S LD + +K + L+ + T+I
Sbjct: 130 E--LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA---TII 184
Query: 327 VIAHRLSTI-KAVDRIVVIDDGRIIEVGN 354
+HR+ + + DR++++ G+ + G
Sbjct: 185 FSSHRMEHVEELCDRLLMLKKGQTVLYGT 213
|
Length = 300 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 1e-13
Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 37/226 (16%)
Query: 151 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI------- 203
V + EV+ IVG SGSGKST + L P G +L++
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 204 --RWLREKIGFVGQEPQL-LQMDIKS--NI----------MYGCPKDVKNEDIEWAAKQA 248
R +R + GFV Q P+ L+M + + NI YG +++ +W +
Sbjct: 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYG---NIRATAQDWLEEVE 136
Query: 249 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 308
I LP + SGG +QR+ IAR ++ P ++ +DE T LD + +
Sbjct: 137 IDPTRIDDLPRAF---------SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARL 187
Query: 309 KGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
+L L D VI++ H L + + R++V+ GR++E G
Sbjct: 188 LDLLRGLVRDLGL--AVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 1e-13
Identities = 65/228 (28%), Positives = 103/228 (45%), Gaps = 45/228 (19%)
Query: 153 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI--------YIDGFPLTDLDIR 204
V + EV+ IVG SGSGK+T +N L P G++ D + L++ + R
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84
Query: 205 WL-REKIGFVGQEP-QLLQMDIKS--NI----M------YGCPKDVKNEDIEWAAKQAYV 250
L R + GFV Q P L+M + + NI M YG D++ +W +
Sbjct: 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYG---DIRATAGDWLERVEID 141
Query: 251 HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 310
I LP + SGG +QR+ IAR ++ P ++ +DE T LD + +
Sbjct: 142 AARIDDLPTTF---------SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLD 192
Query: 311 VLHALRNDCKTKRTVIVIAHRLSTIKAV-----DRIVVIDDGRIIEVG 353
+L L + V+++ H L AV R++V+ GR++E G
Sbjct: 193 LLRGLVRELGL--AVVIVTHDL----AVARLLAHRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 1e-13
Identities = 59/224 (26%), Positives = 101/224 (45%), Gaps = 37/224 (16%)
Query: 153 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI--------- 203
V + EV+ IVG SGSGK+T + + P G + D+
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84
Query: 204 RWLREKIGFVGQEPQL-LQMDIKS--NI----------MYGCPKDVKNEDIEWAAKQAYV 250
R LR + GFV Q P+ L+M + + NI YG +++ E +W +
Sbjct: 85 RLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG---NIRAEAQDWLEEVEID 141
Query: 251 HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 310
+ I LP + SGG +QR+ IAR ++ P ++ +DE T LD + +
Sbjct: 142 LDRIDDLPRTF---------SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 192
Query: 311 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
+L L + V+++ H L+ + + DR++V+ G+++E G
Sbjct: 193 LLRGLVRELGL--AVVIVTHDLAVARLLADRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 2e-13
Identities = 64/238 (26%), Positives = 115/238 (48%), Gaps = 29/238 (12%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
+ F N+ Y + V + + ++ E ++G +G+GK+T + +LL L P G I
Sbjct: 8 IDFRNVEKRYGDKLVV---DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD----IKSNIM-----YGCPKDVKNEDIE 242
+ G P+ R R+++G V PQ +D ++ N++ +G
Sbjct: 65 SLCGEPVPS-RARHARQRVGVV---PQFDNLDPDFTVRENLLVFGRYFGLSAA------A 114
Query: 243 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
A + EF L + V + LSGG K+R+ +ARA++ DP +L+LDE T+ LD
Sbjct: 115 ARALVPPLLEFA-KLENKADAKVGE--LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDP 171
Query: 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 359
++ H + LR+ +T+++ H + + + DR+ VI++GR I G L+
Sbjct: 172 QARHL---MWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALI 226
|
Length = 306 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 2e-13
Identities = 55/230 (23%), Positives = 101/230 (43%), Gaps = 23/230 (10%)
Query: 130 GHVQFVNISFHYPS-RPTVPI-LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 187
++ ++ + + + L + L I ++V IVG +G GKST L LY P
Sbjct: 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ 395
Query: 188 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 247
+G+I +DG ++ R+ + + L I P + ++ ++ A Q
Sbjct: 396 EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIG-------PDEGEHASLDNA--Q 446
Query: 248 AYVHEFILS-----LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
Y+ ++ G+ T LS GQ++R+A+ A L D ILL DE + D
Sbjct: 447 QYLQRLEIADKVKIEDGGFSTTTA---LSTGQQKRLALICAWLEDRPILLFDEWAADQDP 503
Query: 303 ESEHYVKGVLHALRNDCKTK-RTVIVIAHRLSTIKAVDRIVVIDDGRIIE 351
+ + L D K + +T+I+I+H + D+I+ + G I++
Sbjct: 504 A---FKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 3e-13
Identities = 70/254 (27%), Positives = 104/254 (40%), Gaps = 42/254 (16%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSD-------GQIYIDGFPLTD 200
IL + L IE V A++G +G+GKST + L L G + ++G PL
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 201 LDIRWLREKIGFVGQEPQ-LLQMDIKSNIMYGC--------PKDVKNEDIEWAAKQAYVH 251
+D L + Q Q + ++ G ++ +I W A
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQA------ 129
Query: 252 EFILSLPCGYETLVDDDL--LSGGQKQRIAIARAI---------LRDPAILLLDEATSAL 300
L+L G LV D+ LSGG+ R+ AR + + P LLLDE T+AL
Sbjct: 130 ---LAL-AGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAAL 185
Query: 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL- 359
D +H + + L D IV L+ A DRI ++ DG I+ G A++L
Sbjct: 186 DLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA-DRIAMLADGAIVAHGAPADVLT 244
Query: 360 --HKGRLYAKLVKR 371
H R Y V+
Sbjct: 245 PAHIARCYGFAVRL 258
|
Length = 272 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 3e-13
Identities = 53/231 (22%), Positives = 107/231 (46%), Gaps = 36/231 (15%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209
LN + +++ E+ ++G +G+GK+T ++++ P +G++ DG D D+ L E
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG----DTDLTKLPEH 76
Query: 210 ------IGFVGQEPQ-LLQMDIKSNIMYGC--PKDVKNEDIEWA--------AKQAYVHE 252
IG Q+P + ++ N+ K V +A ++ + E
Sbjct: 77 RIARAGIGRKFQKPTVFENLTVRENLELALNRDKSV------FASLFARLRAEERRRIDE 130
Query: 253 FILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 310
+L+ G D LLS GQKQ + I + +DP +LLLDE + +
Sbjct: 131 -LLAT-IGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAE 188
Query: 311 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 360
+L +L K +++V+ H + ++ + D++ V+ +G ++ G+ E+ +
Sbjct: 189 LLKSL----AGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235
|
Length = 249 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 4e-13
Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 67/207 (32%)
Query: 165 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE--KIGFVGQEPQL-LQ 221
++GL+G+GKST + ++ + + +G+ K+G++ QEPQL
Sbjct: 36 VLGLNGAGKSTLLRIMAGVDKEFNGEA-------------RPAPGIKVGYLPQEPQLDPT 82
Query: 222 MDIKSNIMYGCPKDVK-------------NEDIEW---AAKQAYVHEFI----------- 254
++ N+ G + D + A+QA + E I
Sbjct: 83 KTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRK 142
Query: 255 -------LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES--- 304
L P + V LSGG+++R+A+ R +L P +LLLDE T+ LD+ES
Sbjct: 143 LEIAMDALRCPPW-DADVTK--LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAW 199
Query: 305 -EHYVKGVLHALRNDCKTKRTVIVIAH 330
E +++ + TV+ + H
Sbjct: 200 LEQHLQ----------EYPGTVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 4e-13
Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 32/222 (14%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-------- 201
L+ V L I E+VA++G SGSGKST + L G I D + +
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHL-------SGLITGDKSAGSHIELLGRTVQ 72
Query: 202 -------DIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVK--NEDIEWAAKQAYVH 251
DIR R G++ Q+ L+ ++ + N++ G W ++
Sbjct: 73 REGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQR 132
Query: 252 EFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309
G + LSGGQ+QR+AIARA+++ ++L DE ++LD ES V
Sbjct: 133 ALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVM 192
Query: 310 GVLHAL-RNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRI 349
L + +ND TV+V H++ ++ +RIV + G +
Sbjct: 193 DTLRDINQND---GITVVVTLHQVDYALRYCERIVALRQGHV 231
|
Length = 262 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 5e-13
Identities = 74/247 (29%), Positives = 108/247 (43%), Gaps = 57/247 (23%)
Query: 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS------DGQIYIDGFPLTDL 201
++N V L IEA E +A+VG SGSGKS +LRL PS G I G L
Sbjct: 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL-PSPPVVYPSGDIRFHGESLLHA 81
Query: 202 DIRWLR----EKIGFVGQEP------------QLLQM---------DIKSNIMYGCPKDV 236
+ LR KI + QEP QL ++ + + C V
Sbjct: 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRV 141
Query: 237 KNEDIEWAAKQ--AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 294
I AAK+ Y H+ LSGG++QR+ IA A+L P +L+ D
Sbjct: 142 ---GIRQAAKRLTDYPHQ-----------------LSGGERQRVMIAMALLTRPELLIAD 181
Query: 295 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
E T+ALD + + +L L+ + ++ I H LS ++ + DR+ V+ +GR +E
Sbjct: 182 EPTTALDVSVQAQILQLLRELQQELNM--GLLFITHNLSIVRKLADRVAVMQNGRCVEQN 239
Query: 354 NHAELLH 360
A L
Sbjct: 240 RAATLFS 246
|
Length = 529 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 6e-13
Identities = 58/212 (27%), Positives = 101/212 (47%), Gaps = 44/212 (20%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
N+S + R +L+ V L ++ +++ ++G +G+GKST V ++L L P +G I
Sbjct: 9 NVSVSFGQRR---VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI---- 61
Query: 196 FPLTDLDIRWLREKIGFVGQEPQLLQMDIK-----SNIMYGCPKDVKNEDIEWAAKQ--- 247
R + +IG+V PQ L +D + + P K EDI A K+
Sbjct: 62 -------KRNGKLRIGYV---PQKLYLDTTLPLTVNRFLRLRP-GTKKEDILPALKRVQA 110
Query: 248 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 307
++ + + LSGG+ QR+ +ARA+L P +L+LDE T +D +
Sbjct: 111 GHLIDAPMQK------------LSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVA 158
Query: 308 VKGVLHALRN--DCKTKRTVIVIAHRLSTIKA 337
+ ++ LR DC V++++H L + A
Sbjct: 159 LYDLIDQLRRELDC----AVLMVSHDLHLVMA 186
|
Length = 251 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 8e-13
Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 47/227 (20%)
Query: 136 NISFHYP-SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL---LRLYEPSDGQI 191
NISF R +PIL ++ E+V ++G GSG ST + L +G I
Sbjct: 8 NISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI 67
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQE----PQLLQMDIKSNIMYGCPKDVKNEDIEWAAK- 246
+ +G P + ++ E I +V +E P L V+ E +++A +
Sbjct: 68 HYNGIPYKEFAEKYPGEII-YVSEEDVHFPTLT---------------VR-ETLDFALRC 110
Query: 247 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE- 305
+ +EF+ + SGG+++R++IA A++ ++L D +T LDS +
Sbjct: 111 KG--NEFVRGI-------------SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTAL 155
Query: 306 HYVKGVLHALRNDCKTKRTVIVIAHRLS--TIKAVDRIVVIDDGRII 350
+K + K T V ++ S D+++V+ +GR I
Sbjct: 156 EILKCIRTMAD---VLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 8e-13
Identities = 64/237 (27%), Positives = 114/237 (48%), Gaps = 32/237 (13%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
N++ Y R V V LT+ + E+V ++G +G+GK+T +++ + G I ID
Sbjct: 8 NLAKAYKGRRVV---EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIID- 63
Query: 196 FPLTDLDIRWL------REKIGFVGQEPQLLQ-MDIKSNIM--YGCPKDVKNEDIEWAAK 246
D DI L R IG++ QE + + + + N+M D+ E E A
Sbjct: 64 ----DEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRAN 119
Query: 247 QAYVHEFILSLPCGYETLVDDDL---LSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303
+ + EF + + D + LSGG+++R+ IARA+ +P +LLDE + +D
Sbjct: 120 E-LMEEFHIEH-------LRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI 171
Query: 304 SEHYVKGVLHALRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELL 359
S +K ++ LR+ + V++ H + T+ +R ++ G +I G E+L
Sbjct: 172 SVIDIKRIIEHLRD---SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225
|
Length = 241 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 1e-12
Identities = 55/220 (25%), Positives = 100/220 (45%), Gaps = 27/220 (12%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLRE 208
LN + L ++ E+ I+G +G+GK+T ++++ P +G + G LT L + R
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 209 KIGFVGQEPQ-LLQMDIKSNIMYGCPKD----------VKNEDIEWAAKQAYVHEFILSL 257
IG Q+P + + N+ P+D + E+ + + E I
Sbjct: 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVL---ETI--- 131
Query: 258 PCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 315
G D LLS GQKQ + I +++DP +LLLDE + + E +L +L
Sbjct: 132 --GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL 189
Query: 316 RNDCKTKRTVIVIAHRLSTIKAVDRIV-VIDDGRIIEVGN 354
K +V+V+ H + ++++ V V+ G ++ G+
Sbjct: 190 ----AGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-12
Identities = 60/229 (26%), Positives = 107/229 (46%), Gaps = 20/229 (8%)
Query: 128 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 187
+ F +S HY + L+ V L I E+V ++G +G+GK+T + L +
Sbjct: 2 EKVMLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT 58
Query: 188 DGQIYIDGFPLTDLDI-RWLREKIGFVGQEPQLL-QMDIKSNIMYG---CPKDVKNEDIE 242
G+I DG +TD + +RE + V + ++ +M ++ N+ G +D E I+
Sbjct: 59 SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK 118
Query: 243 WAAKQAYVHEFILSLPCGYETLVD-DDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 301
W V+E P +E + +SGG++Q +AI RA++ P +LLLDE + L
Sbjct: 119 W------VYEL---FPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLA 169
Query: 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 350
+ + LR T +V + +K DR V+++G ++
Sbjct: 170 PIIIQQIFDTIEQLREQGMT--IFLVEQNANQALKLADRGYVLENGHVV 216
|
Length = 237 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 2e-12
Identities = 65/230 (28%), Positives = 101/230 (43%), Gaps = 28/230 (12%)
Query: 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL--TDLDIRW 205
P+L + L + V +VG +G GKST L L P G + G PL + +
Sbjct: 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74
Query: 206 LREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 263
LR+++ V Q+P Q+ DI S+I + ++N + A V E + T
Sbjct: 75 LRQQVATVFQDPEQQIFYTDIDSDIAF----SLRNLGVPEAEITRRVDEAL--------T 122
Query: 264 LVDDD--------LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 315
LVD LS GQK+R+AIA A++ LLLDE T+ LD + + +
Sbjct: 123 LVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAI---I 179
Query: 316 RNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRL 364
R VI+ +H + I + D + V+ G+I+ G E+
Sbjct: 180 RRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEA 229
|
Length = 271 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 64/214 (29%), Positives = 109/214 (50%), Gaps = 12/214 (5%)
Query: 143 SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 202
+ P V L+ L + V+A+VG +G+GKST + +L +Y G I G +T
Sbjct: 13 AFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG 72
Query: 203 IRWLREK-IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI--LSLP 258
+ +E IG + QE L+ Q+ I NI G + I+W A + + L+L
Sbjct: 73 PKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR 132
Query: 259 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL-DSESEHYVKGVLHALRN 317
+ LV + LS G++Q + IA+ + + ++++DE T AL D+E+E + V+ L++
Sbjct: 133 FSSDKLVGE--LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR-VIRELKS 189
Query: 318 DCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 350
R ++ I+HRL I + D + V DG+ I
Sbjct: 190 Q---GRGIVYISHRLKEIFEICDDVTVFRDGQFI 220
|
Length = 501 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 5e-12
Identities = 53/234 (22%), Positives = 108/234 (46%), Gaps = 34/234 (14%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYID 194
N++ P ++ V ++ E++ + GL G+G++ V L Y +G ++I+
Sbjct: 262 NLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFIN 321
Query: 195 GFPLTDLDIR----WLREKIGFVGQEPQ----LLQMDIKSNIMYG-----CPKDVKNEDI 241
G P+ DIR +R I V ++ + + + + NI C K +
Sbjct: 322 GKPV---DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAA 378
Query: 242 EWAA-----KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 296
E ++ V LP G LSGG +Q+ +A+ +L +P +L+LDE
Sbjct: 379 ELQIIGSAIQRLKVKTASPFLPIGR--------LSGGNQQKAVLAKMLLTNPRVLILDEP 430
Query: 297 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 349
T +D +++ + +++ L + +IV++ L+ + + DR++VI +G++
Sbjct: 431 TRGVDVGAKYEIYKLINQL---AQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 5e-12
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 67/207 (32%)
Query: 165 IVGLSGSGKSTFVNLLLR----LYEPSDGQIYI-DGFPLTDLDIRWLREKIGFVGQEPQL 219
++GL+G+GKST LLR + + +G+ G K+G++ QEPQL
Sbjct: 38 VLGLNGAGKST----LLRIMAGVDKEFEGEARPAPGI------------KVGYLPQEPQL 81
Query: 220 -LQMDIKSNIMYGCPKDVKN-----EDI------------EWAAKQAYVHEFI------- 254
+ ++ N+ G +VK +I AA+Q + E I
Sbjct: 82 DPEKTVRENVEEGV-AEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWD 140
Query: 255 -----------LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303
L P + V LSGG+++R+A+ R +L P +LLLDE T+ LD+E
Sbjct: 141 LDSQLEIAMDALRCPPW-DAKVTK--LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE 197
Query: 304 SEHYVKGVLHALRNDCKTKRTVIVIAH 330
S +++ LH TV+ + H
Sbjct: 198 SVAWLEQFLH------DYPGTVVAVTH 218
|
Length = 556 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 9e-12
Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 12/158 (7%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208
+ + + T+ A E + + G +GSGK+T + +L L P G++ ++G PL R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 209 KIGFVGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 267
+ ++G P + + + N+ + D +E +E A + ++ F P
Sbjct: 75 -LLYLGHAPGIKTTLSVLENLRFWHA-DHSDEQVEEALARVGLNGF-EDRPVAQ------ 125
Query: 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305
LS GQ++R+A+AR +L + +LDE T+ALD
Sbjct: 126 --LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGV 161
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 9e-12
Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 45/242 (18%)
Query: 146 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDI 203
IL + L+I E+ AI+G +GSGKST ++ Y+ +G I G + DL+
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78
Query: 204 RWLREKIG-FVG-QEPQLLQMDIKSNIMYGCPKDVKNED---IEWAAKQAYVHEFILSLP 258
R +G F+ Q P ++I V N D + + +K+ + L P
Sbjct: 79 E-ERAHLGIFLAFQYP----IEIPG---------VSNADFLRLAYNSKRKFQGLPELD-P 123
Query: 259 CGYETLVDDDL-----------------LSGGQKQRIAIARAILRDPAILLLDEATSALD 301
+ ++++ L SGG+K+R I + L D + +LDE S LD
Sbjct: 124 LEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLD 183
Query: 302 SESEHYVKGVLHALRNDCKTKRTVIVIAH--RLSTIKAVDRIVVIDDGRIIEVGNHAELL 359
++ + ++ L ++I+I H RL D + V+ +G+II+ G+ AEL
Sbjct: 184 IDALKIIAEGINKLMTSEN---SIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD-AELA 239
Query: 360 HK 361
+
Sbjct: 240 KE 241
|
Length = 252 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 9e-12
Identities = 64/232 (27%), Positives = 100/232 (43%), Gaps = 44/232 (18%)
Query: 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIRW 205
IL V LT++ E+ AI+G +GSGKST + YE + G I G L +L+
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD- 72
Query: 206 LREKIG-FVG-QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA---YVHEFILSLPCG 260
R + G F+ Q P+ +I V N + +A A E L L
Sbjct: 73 ERARAGLFLAFQYPE----EIPG---------VSNLEFLRSALNARRSARGEEPLDLL-D 118
Query: 261 YETLVDDDL-----------------LSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303
+ L+ L SGG+K+R I + L +P + +LDE S LD +
Sbjct: 119 FLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDID 178
Query: 304 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV--DRIVVIDDGRIIEVG 353
+ V ++ LR R+ ++I H + + D + V+ DGRI++ G
Sbjct: 179 ALKIVAEGINRLREP---DRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 1e-11
Identities = 55/214 (25%), Positives = 105/214 (49%), Gaps = 16/214 (7%)
Query: 139 FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 198
F RP V LN +T N++ A +G +G+GK+T +++L L P+ G + + G +
Sbjct: 938 FEPSGRPAVDRLN---ITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI 994
Query: 199 -TDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 256
T+LD +R+ +G Q L + + +I++ ++ W Q + +
Sbjct: 995 ETNLDA--VRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRS----WEEAQLEMEAMLED 1048
Query: 257 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 316
++ + LSGG ++++++A A + D +++LDE TS +D S + +L R
Sbjct: 1049 TGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR 1108
Query: 317 NDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 349
+ RT+I+ H + + DRI +I GR+
Sbjct: 1109 ----SGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 1e-11
Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 40/199 (20%)
Query: 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 215
I EV+ IVG +G GK+TF LL + +P +G++ +L I +
Sbjct: 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV------DPELKISY---------- 404
Query: 216 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA-----YVHEFI--LSLPCGYETLVDDD 268
+PQ ++ D D ED+ + Y E I L L + V D
Sbjct: 405 KPQYIKPD----------YDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKD- 453
Query: 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-TVIV 327
LSGG+ QR+AIA + RD + LLDE ++ LD E + V A+R + + T +V
Sbjct: 454 -LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVE-QRLA--VAKAIRRIAEEREATALV 509
Query: 328 IAHRLSTIKAV-DRIVVID 345
+ H + I + DR++V +
Sbjct: 510 VDHDIYMIDYISDRLMVFE 528
|
Length = 590 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 2e-11
Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 34/224 (15%)
Query: 153 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-REK 209
+ + A E++ +VG +G+GKST LL R+ P G I G PL L R +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKST---LLARMAGLLPGSGSIQFAGQPLEAWSAAELARHR 71
Query: 210 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL 269
Q+ M + + P + E + A ++E +L +DD L
Sbjct: 72 AYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASA-----LNEVAEAL------GLDDKL 120
Query: 270 ------LSGGQKQRIAIARAILR-DPAI------LLLDEATSALDSESEHYVKGVLHALR 316
LSGG+ QR+ +A +L+ P I LLLDE ++LD + + +L L
Sbjct: 121 GRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSEL- 179
Query: 317 NDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 359
C+ V++ +H L+ T++ DR+ ++ G+++ G E+L
Sbjct: 180 --CQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-11
Identities = 52/212 (24%), Positives = 84/212 (39%), Gaps = 54/212 (25%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209
L ++ ++I N +V + G+SGSGKST VN L S I P R K
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL---YASGKARLISFLPKFS------RNK 61
Query: 210 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL 269
+ F+ Q LQ I + Y L G +
Sbjct: 62 LIFIDQ----LQFLIDVGLGY--------------------------LTLGQKL----ST 87
Query: 270 LSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 327
LSGG+ QR+ +A + +P + +LDE ++ L + + + V+ L + TVI+
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID---LGNTVIL 144
Query: 328 IAHRLSTIKAVDRIVVI------DDGRIIEVG 353
I H L + + D I+ G+++ G
Sbjct: 145 IEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 4e-11
Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 35/220 (15%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209
L T+ + A+VG++GSGKST L+ + G+I I G P + L++
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR----QALQKN 78
Query: 210 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDD 268
+ V PQ ++D + P V ED+ + Y H L + +V
Sbjct: 79 L--VAYVPQSEEVD------WSFP--VLVEDVVMMGR--YGHMGWLRRAKKRDRQIVTAA 126
Query: 269 L---------------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 313
L LSGGQK+R+ +ARAI + ++LLDE + +D ++E + +L
Sbjct: 127 LARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLR 186
Query: 314 ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 353
LR++ +T++V H L ++ V+ G ++ G
Sbjct: 187 ELRDE---GKTMLVSTHNLGSVTEFCDYTVMVKGTVLASG 223
|
Length = 272 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 5e-11
Identities = 57/229 (24%), Positives = 111/229 (48%), Gaps = 24/229 (10%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYID 194
N++ P P + ++ V ++ E++ I GL G+G++ V L Y +G+I+ID
Sbjct: 264 NLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFID 323
Query: 195 GFPLTDLDIR----WLREKIGFVGQEPQ----LLQMDIKSNIMYGCPKDVKNED-IEWAA 245
G P+ IR + + I V ++ + + M + NI I+ AA
Sbjct: 324 GKPV---KIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA 380
Query: 246 KQAYVHEFILSLPCGYETLVDDDL----LSGGQKQRIAIARAILRDPAILLLDEATSALD 301
+ + E I L + +L LSGG +Q+ +A+ +L +P IL+LDE T +D
Sbjct: 381 ELKTILESIQRLKVKTASP---ELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437
Query: 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 349
+++ + +++ L + +IVI+ L + + DR++V+ +G++
Sbjct: 438 VGAKYEIYKLINQL---VQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 5e-11
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 11/103 (10%)
Query: 270 LSGGQKQRIAIARAILR------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 323
LSGG++QR+ +AR + + P LLLDE TSALD +H VL R +
Sbjct: 135 LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQH---HVLRLARQLAHERG 191
Query: 324 -TVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELLHKGRL 364
VIV+ H L+ + DRIV++ GR++ G AE+L L
Sbjct: 192 LAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPETL 234
|
Length = 258 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 5e-11
Identities = 53/239 (22%), Positives = 101/239 (42%), Gaps = 45/239 (18%)
Query: 145 PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTD 200
P+++ V LT++ V+A+VG SGSGKS L + + G++ +DG P+
Sbjct: 14 AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP 73
Query: 201 LDIRWLREKIGFVGQEPQ----------------LLQMDIKSN--IMYGCPKDVKNEDIE 242
+R KI + Q P+ L + ++ + + V E+
Sbjct: 74 CALR--GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA 131
Query: 243 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
+ Y E +SGG QR+ IA A+L + ++ DE T+ LD
Sbjct: 132 -RVLKLYPFE-----------------MSGGMLQRMMIALALLCEAPFIIADEPTTDLDV 173
Query: 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLH 360
++ + +L ++ ++++ H + + + D + V+ GRI+E G+ L +
Sbjct: 174 VAQARILDLLESIVQK--RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230
|
Length = 254 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 7e-11
Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 28/200 (14%)
Query: 139 FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 198
+HY LN++ + E+V I+GL+GSGKST NL+ + P+ G + I G
Sbjct: 36 YHYA-------LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG--- 85
Query: 199 TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLP 258
+ G GQ + +++K +M G K+ E I + A + +FI
Sbjct: 86 ---SAALIAISSGLNGQLTGIENIELKG-LMMGLTKEKIKEIIPEIIEFADIGKFIYQPV 141
Query: 259 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318
Y S G K R+ A ++ +P IL++DEA S D + + K L + N+
Sbjct: 142 KTY---------SSGMKSRLGFAISVHINPDILVIDEALSVGD---QTFTKKCLDKM-NE 188
Query: 319 CKTK-RTVIVIAHRLSTIKA 337
K + +T+ I+H LS +K+
Sbjct: 189 FKEQGKTIFFISHSLSQVKS 208
|
Length = 549 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 9e-11
Identities = 55/229 (24%), Positives = 93/229 (40%), Gaps = 27/229 (11%)
Query: 145 PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYE---PSDGQIYIDGFPLTD 200
T IL + I+ E+ ++G GSG ST + + +G I DG +
Sbjct: 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEE 131
Query: 201 LDIRWLREKIGFVGQE----PQL-----LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 251
+ + R + + + P L L + P V E E+A A V+
Sbjct: 132 I-KKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSRE--EYAKHIADVY 188
Query: 252 EFILSLPCGYETLVDDDLL---SGGQKQRIAIARAILRDPAILLLDEATSALDSESE-HY 307
L T V +D + SGG+++R++IA A L I D AT LDS + +
Sbjct: 189 MATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEF 248
Query: 308 VKGVLHALRNDCK-TKRTVIVIAHRLS--TIKAVDRIVVIDDGRIIEVG 353
++ AL+ T +V ++ S + D+++V+ +G I G
Sbjct: 249 IR----ALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-10
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 48/177 (27%)
Query: 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 207
+ + + T+ A E + + G +GSGK+T + L+ L P+ G I +DG + D D +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD---VA 72
Query: 208 EKIGFVGQEPQLLQMDIKSNIMYGCPKD-VKN-----EDIE-WAA----KQAYVHEF--- 253
E ++G ++ +K E++E WAA ++ +
Sbjct: 73 EACHYLG------------------HRNAMKPALTVAENLEFWAAFLGGEELDIAAALEA 114
Query: 254 -----ILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305
+ LP GY LS GQK+R+A+AR ++ + I +LDE T+ALD+ +
Sbjct: 115 VGLAPLAHLPFGY--------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAV 163
|
Length = 207 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 1e-10
Identities = 45/199 (22%), Positives = 65/199 (32%), Gaps = 62/199 (31%)
Query: 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGFPLTDLDIRWLREKIGFVGQEPQ 218
EV+ IVG GSGK+T L R P G IYIDG + + + L I +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS- 60
Query: 219 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278
SG + R+
Sbjct: 61 ---------------------------------------------------GSGELRLRL 69
Query: 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHA---LRNDCKTKRTVIVIAHRLSTI 335
A+A A P +L+LDE TS LD+E E + + L + TVI+ + +
Sbjct: 70 ALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
Query: 336 K------AVDRIVVIDDGR 348
DR +V+
Sbjct: 130 GPALLRRRFDRRIVLLLIL 148
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 58/237 (24%)
Query: 153 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 212
+ ++ A E+V + GL G+G+S + LL + GQ+Y+DG P+ DIR R+ I
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPI---DIRSPRDAI-- 326
Query: 213 VGQEPQLLQMDIKSNIMYGCPKDVKNEDI---------------------------EWAA 245
++ IM CP+D K E I W A
Sbjct: 327 ------------RAGIML-CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEA 373
Query: 246 KQAYVHEFILSL----PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 301
+ A FI SL P + ++ LSGG +Q+ + R + D ++LLDE T +D
Sbjct: 374 ENA--DRFIRSLNIKTPSREQLIM---NLSGGNQQKAILGRWLSEDMKVILLDEPTRGID 428
Query: 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAE 357
++H + V++ L V+ ++ L + V DRIVV+ +GRI +
Sbjct: 429 VGAKHEIYNVIYEL---AAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482
|
Length = 501 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-10
Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 10/163 (6%)
Query: 143 SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 202
SR + + T+ A E + + G +G GK+T + +L L P G++ +G L +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 203 IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 261
R I ++G P L + N+ + + A A LP
Sbjct: 69 DEPHRN-ILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQ 127
Query: 262 ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304
LS GQ++R+A+AR L + +LDE T+ALD
Sbjct: 128 --------LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAG 162
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 2e-10
Identities = 54/205 (26%), Positives = 84/205 (40%), Gaps = 46/205 (22%)
Query: 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 214
+ I AI+G +G GKST + L RL P+ G +++DG + + + +IG +
Sbjct: 28 VEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLA 87
Query: 215 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS--------------LPCG 260
Q P D+ + E A+ Y H+ + + G
Sbjct: 88 QNAT-------------TPGDITVQ--ELVARGRYPHQPLFTRWRKEDEEAVTKAMQATG 132
Query: 261 YETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALD---------------SE 303
L D D LSGGQ+QR IA + ++ AI+LLDE T+ LD E
Sbjct: 133 ITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE 192
Query: 304 SEHYVKGVLHALRNDCKTKRTVIVI 328
+ + VLH L C+ +I +
Sbjct: 193 KGYTLAAVLHDLNQACRYASHLIAL 217
|
Length = 265 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 4e-10
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 14/171 (8%)
Query: 135 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 194
+ + F Y +P +L + + A ++ + G +G+GK+T + L+ L P G+I +
Sbjct: 5 IELDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFE 61
Query: 195 GFPLTDLDIRWLREKIGFVGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF 253
+ D+ ++++ FVG + + ++ N +Y I + + E
Sbjct: 62 RQSI-KKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCR-LFSLEH 119
Query: 254 ILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304
++ PCG LLS GQK+++A+ R + + LLDE ALD S
Sbjct: 120 LIDYPCG--------LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELS 162
|
Length = 200 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 4e-10
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 9/81 (11%)
Query: 270 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT-KRTVIVI 328
LSGG+K R+A+A+ +L +P +LLLDE T+ LD ES + AL K TVI++
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES-------IEALEEALKEYPGTVILV 123
Query: 329 AHRLSTIKAV-DRIVVIDDGR 348
+H + V +I+ ++DG+
Sbjct: 124 SHDRYFLDQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 6e-10
Identities = 64/241 (26%), Positives = 105/241 (43%), Gaps = 57/241 (23%)
Query: 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDI 203
V +N + ++ A E + IVG SGSGKS L+ L + G +G + +L
Sbjct: 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88
Query: 204 RWLR----EKIGFVGQEPQLL---QMDIKSNIMYGCPKDV--------KNEDIEWAAK-- 246
+ L E+I + Q+P M + +M +V K E E + +
Sbjct: 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLM-----EVLMLHKGMSKAEAFEESVRML 143
Query: 247 ------------QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 294
+ Y HEF SGG +QR+ IA A+L P +L+ D
Sbjct: 144 DAVKMPEARKRMKMYPHEF-----------------SGGMRQRVMIAMALLCRPKLLIAD 186
Query: 295 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
E T+ALD + + +L+ L+ + T +I+I H L + + D+++V+ GR +E G
Sbjct: 187 EPTTALDVTVQAQIMTLLNELKREFNT--AIIMITHDLGVVAGICDKVLVMYAGRTMEYG 244
Query: 354 N 354
N
Sbjct: 245 N 245
|
Length = 330 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 7e-10
Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 15/164 (9%)
Query: 143 SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 202
SR P+ + ++A E + + G +G+GK+T + +L L GQI IDG T D
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 203 IRWLREK-IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 260
R + + ++G P L + N+ + C + AKQ + G
Sbjct: 80 ----RSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRR------AKQMPGSALAIVGLAG 129
Query: 261 YE-TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303
YE TLV LS GQK+R+A+AR L + LLDE + LD E
Sbjct: 130 YEDTLVRQ--LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171
|
Length = 214 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 8e-10
Identities = 61/232 (26%), Positives = 100/232 (43%), Gaps = 49/232 (21%)
Query: 143 SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 202
S P V L++V L + + + A++G +G+GKST + L +Y+ G I G +
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
Query: 203 IR-WLREKIGFVGQE-PQLLQMDIKSNI----------------MYGCPKDVKNE---DI 241
+ L I V QE +LQ + N+ MY K + +E DI
Sbjct: 67 SKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI 126
Query: 242 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL- 300
+ AK A LS Q Q I IA+A + I+++DE TS+L
Sbjct: 127 DPRAKVAT--------------------LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLT 166
Query: 301 DSESEHYVKGVLHALRND-CKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 350
+ E H ++ L+ C ++ I+H++ I + D I ++ DG+ I
Sbjct: 167 EKEVNHLFT-IIRKLKERGC----GIVYISHKMEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 9e-10
Identities = 60/203 (29%), Positives = 94/203 (46%), Gaps = 27/203 (13%)
Query: 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 215
T +VV I+G +G GKST + +L +P+ G+ + P D I+ R G
Sbjct: 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFR------GT 147
Query: 216 EPQ-----LLQMDIK--SNIMY--GCPKDVK---NEDIEWAAKQAYVHEFILSLPCGYET 263
E Q L + +++ Y PK VK E ++ ++ E + L G E
Sbjct: 148 ELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERL--GLEN 205
Query: 264 LVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT 321
++D D+ LSGG+ QR+AIA A+LRD + DE +S LD V+ L +
Sbjct: 206 VLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIREL---AED 262
Query: 322 KRTVIVIAHRLSTIKAVDRIVVI 344
+ VIV+ H L+ + + V I
Sbjct: 263 GKYVIVVEHDLAVLDYLSDFVHI 285
|
Length = 591 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 25/181 (13%)
Query: 163 VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM 222
+ I G +G GKS+ +L L+ G++ + K+ +V Q P +
Sbjct: 481 LLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLG 529
Query: 223 DIKSNIMY-GCPKDVKNEDIEWAAKQAY---VH-EFILSLPCGYETLVD-DDLLSGGQKQ 276
++ I+Y +D+K + + V IL G+ + D D+LSGG+KQ
Sbjct: 530 TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQ 589
Query: 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-TVIVIAHRLSTI 335
RIA+AR P +LDE TSA+ + E Y + C+ T+ ++HR S
Sbjct: 590 RIAMARLFYHKPQFAILDECTSAVSVDVEGY-------MYRLCREFGITLFSVSHRKSLW 642
Query: 336 K 336
K
Sbjct: 643 K 643
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-09
Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 26/226 (11%)
Query: 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIR- 204
IL + L + EV AI+G +GSGKST L YE + G + G L +L
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74
Query: 205 WLREKIGFVGQEPQ---------LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI- 254
E I Q P LQ + + Y + + D Q + E I
Sbjct: 75 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDF-----QDLMEEKIA 129
Query: 255 -LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 313
L +P T + SGG+K+R I + + +P + +LDE+ S LD ++ V ++
Sbjct: 130 LLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVN 189
Query: 314 ALRNDCKTKRTVIVIAHR---LSTIKAVDRIVVIDDGRIIEVGNHA 356
+LR+ KR+ I++ H L IK D + V+ GRI++ G+
Sbjct: 190 SLRDG---KRSFIIVTHYQRILDYIKP-DYVHVLYQGRIVKSGDFT 231
|
Length = 248 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-09
Identities = 43/190 (22%), Positives = 69/190 (36%), Gaps = 66/190 (34%)
Query: 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 216
++ EV+ IVG +G+GK+T V +L P + W + +
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIP------------NGDNDEWDGITPVY---K 66
Query: 217 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276
PQ + LSGG+ Q
Sbjct: 67 PQYID------------------------------------------------LSGGELQ 78
Query: 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 336
R+AIA A+LR+ L DE ++ LD E + L + K+T +V+ H L+ +
Sbjct: 79 RVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE--EGKKTALVVEHDLAVLD 136
Query: 337 AV-DRIVVID 345
+ DRI V +
Sbjct: 137 YLSDRIHVFE 146
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 3e-09
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
N+S R +L+ V LT+ EVVAI+G +G+GKST + L P G++ ++G
Sbjct: 7 NLSVRLGGRT---LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNG 63
Query: 196 FPLTDL 201
PL D
Sbjct: 64 RPLADW 69
|
Length = 258 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 3e-09
Identities = 58/223 (26%), Positives = 108/223 (48%), Gaps = 34/223 (15%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
+ F + SF YP P + ++ I+ + +A+VG +G GKST + L+ +PS G +
Sbjct: 509 ISFSDASFGYPGGPL--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN---IMYGCPKDVKNEDIEWAAKQA 248
+ R + ++ Q + +D+ SN M C V + + +A
Sbjct: 567 F-----------RSAKVRMAVFSQH-HVDGLDLSSNPLLYMMRCFPGVPEQKL-----RA 609
Query: 249 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES-EHY 307
++ F ++ G L LSGGQK R+A A+ + P ILLLDE ++ LD ++ E
Sbjct: 610 HLGSFGVT---GNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEAL 666
Query: 308 VKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRI 349
++G++ + V++++H I +VD + V+ +G++
Sbjct: 667 IQGLV-------LFQGGVLMVSHDEHLISGSVDELWVVSEGKV 702
|
Length = 718 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 8e-09
Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 48/223 (21%)
Query: 132 VQFVNISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-- 188
+ + N+++ P +LN++ ++ + A++G SG+GK+T +++L
Sbjct: 4 LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT 63
Query: 189 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 248
G+I I+G PL + G+V Q D+ S P E + ++A
Sbjct: 64 GEILINGRPLDKN----FQRSTGYVEQ------QDVHS------PNLTVREALRFSAL-- 105
Query: 249 YVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306
L LS Q++R+ I + P+IL LDE TS LDS++ +
Sbjct: 106 --------------------LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAY 145
Query: 307 YVKGVLHALRNDCKTKRTVIVIAHRLS--TIKAVDRIVVIDDG 347
++ L+ + + ++ H+ S + DR++++ G
Sbjct: 146 ---NIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 1e-08
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++ N+S Y + +L + LTI + + +VG +G+GKST + L+ EP +G +
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 2e-08
Identities = 50/230 (21%), Positives = 106/230 (46%), Gaps = 26/230 (11%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209
L+ + L +V+ +VG++GSGKST N++ P+ G++ +G ++ +
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG------EVSVIAIS 93
Query: 210 IGFVGQEPQLLQMDIKSNIMYGCPKDVKN---EDIEWAAKQAYVHEFILSLPCGYETLVD 266
G GQ + ++ K M K++K + IE++ + EFI Y
Sbjct: 94 AGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSE----LGEFIYQPVKKY----- 144
Query: 267 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 326
S G + ++ + I +P IL++DEA S D + + + L + + +T+
Sbjct: 145 ----SSGMRAKLGFSINITVNPDILVIDEALSVGD---QTFAQKCLDKIYEFKEQNKTIF 197
Query: 327 VIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTES 375
++H L ++ +I I+ G++ + G ++L K + K+++++
Sbjct: 198 FVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFKKKSKA 247
|
Length = 264 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 270 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 329
LSGG QR+ IA AI P +L+ DE T+ALD + + +L L+ K +++I
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQ--KENMALVLIT 211
Query: 330 HRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKGR 363
H L+ + +A +I+V+ G+++E G ++ R
Sbjct: 212 HDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPR 246
|
Length = 326 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-08
Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 38/222 (17%)
Query: 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-REKIG 211
+ A E++ +VG +G+GKST LL R+ G I G PL L R +
Sbjct: 20 GEVRAGEILHLVGPNGAGKST---LLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAY 76
Query: 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL-- 269
Q+ M + + P + E + A L+L DD L
Sbjct: 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAG-------ALAL--------DDKLGR 121
Query: 270 ----LSGGQKQRIAIARAILR-------DPAILLLDEATSALDSESEHYVKGVLHALRND 318
LSGG+ QR+ +A +L+ +LLLDE ++LD + + +L AL
Sbjct: 122 STNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL--- 178
Query: 319 CKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 359
C+ +++ +H L+ T++ R ++ G+++ G E+L
Sbjct: 179 CQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 4e-08
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 270 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 329
LSGG +QR+ IA A+ PA+L+ DE T+ALD + + ++ L+ + VI I
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMG--VIFIT 226
Query: 330 HRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 360
H + + + DR++V+ G +E G+ ++ H
Sbjct: 227 HDMGVVAEIADRVLVMYQGEAVETGSVEQIFH 258
|
Length = 623 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 5e-08
Identities = 48/221 (21%), Positives = 104/221 (47%), Gaps = 29/221 (13%)
Query: 151 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLDIRWLR 207
+ ++ E++ GL GSG++ +N L + + + G+I ++G P + LD ++
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDA--VK 337
Query: 208 EKIGFVGQEPQ----LLQMDIKSNIM---------YGCPKDVKNEDIEWAAKQAYVHEFI 254
+ + ++ + + I N+ Y + +E E + A +
Sbjct: 338 KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE--QRTAENQREL 395
Query: 255 LSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 312
L+L C V+ ++ LSGG +Q++ I++ + P +++ DE T +D ++ + V+
Sbjct: 396 LALKC---HSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVM 452
Query: 313 HALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEV 352
L +D K +++++ L I V DRI V +GR+ ++
Sbjct: 453 RQLADDGK---VILMVSSELPEIITVCDRIAVFCEGRLTQI 490
|
Length = 510 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 6e-08
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 39/178 (21%)
Query: 152 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211
+ T+ A E+V I G +G+GK++ + +L L P G++ G P+ + ++ +
Sbjct: 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL- 77
Query: 212 FVGQEPQLLQMDIKS------NIMYGCP-KDVKNEDIEWAAKQA-----YVHEFILSLPC 259
++G +P IK+ N+ + +++ W A + +P
Sbjct: 78 YLGHQP-----GIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----VPV 127
Query: 260 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV--LHAL 315
LS GQ++R+A+AR L + +LDE +A+D +GV L AL
Sbjct: 128 RQ--------LSAGQQRRVALARLWLTRAPLWILDEPFTAID------KQGVARLEAL 171
|
Length = 204 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 6e-08
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 25/186 (13%)
Query: 161 EVVAIVGLSGSGKSTFVNLLL--------RLYEPSDGQIYIDGFPLTDLDIRW--LREKI 210
+V+ +VG +G GKST + +L + +P D +D F ++L + L E
Sbjct: 27 QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGD 86
Query: 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF-ILSLPCGYETLVDDDL 269
V +PQ + + PK VK + E K+ + L ++D ++
Sbjct: 87 VKVIVKPQYVDL---------IPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNI 137
Query: 270 --LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 327
LSGG+ QR+AIA A+ RD DE +S LD + ++ L D V+V
Sbjct: 138 DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED---DNYVLV 194
Query: 328 IAHRLS 333
+ H L+
Sbjct: 195 VEHDLA 200
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 7e-08
Identities = 65/257 (25%), Positives = 113/257 (43%), Gaps = 50/257 (19%)
Query: 135 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 194
+ I F V ++ V +T+ E+ +VG SGSGKS + + + + ++ D
Sbjct: 9 LTIEFKTSQGW-VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDN-WRVTAD 66
Query: 195 GFPLTDLDIRWL--REKIGFVG-------QEP------------QLLQMDIKSNIMYGCP 233
D+D+ L RE+ VG QEP QL+Q NI
Sbjct: 67 RMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQ-----NIPAWTY 121
Query: 234 KDVKNEDIEWAAKQAYV---------HEFIL-SLPCGYETLVDDDLLSGGQKQRIAIARA 283
K + W ++A H+ I+ S P YE L+ G+ Q++ IA A
Sbjct: 122 KGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP--YE-------LTEGECQKVMIAIA 172
Query: 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIV 342
+ P +L+ DE T++++ ++ + +L L + T T+++I+H L I + D+I
Sbjct: 173 LANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNT--TILLISHDLQMISQWADKIN 230
Query: 343 VIDDGRIIEVGNHAELL 359
V+ G+ +E EL+
Sbjct: 231 VLYCGQTVESAPSEELV 247
|
Length = 330 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 8e-08
Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 40/250 (16%)
Query: 137 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF 196
I F V ++ V +T+ E+ +VG SGSGKS + + + + ++ D
Sbjct: 11 IEFKTSDGW-VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTK-DNWRVTADRM 68
Query: 197 PLTDLDIRWL--REKIGFVG-------QEPQLL---QMDIKSNIMYGCP----KDVKNED 240
D+D+ L RE+ VG QEPQ + +M P K +
Sbjct: 69 RFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQR 128
Query: 241 IEWAAKQAYV---------HEFIL-SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 290
W ++A H+ + S P YE L+ G+ Q++ IA A+ P +
Sbjct: 129 FGWRKRRAIELLHRVGIKDHKDAMRSFP--YE-------LTEGECQKVMIAIALANQPRL 179
Query: 291 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRI 349
L+ DE T+A++ ++ + +L L + T T+++I+H L + + D+I V+ G+
Sbjct: 180 LIADEPTNAMEPTTQAQIFRLLTRLNQNNNT--TILLISHDLQMLSQWADKINVLYCGQT 237
Query: 350 IEVGNHAELL 359
+E EL+
Sbjct: 238 VETAPSKELV 247
|
Length = 330 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 8e-08
Identities = 59/268 (22%), Positives = 108/268 (40%), Gaps = 89/268 (33%)
Query: 124 KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 183
KL R V+ N++ + + P + ++ L +EA E +AI+G +G GK+T + L+
Sbjct: 314 KLHRNALEVE--NLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGE 368
Query: 184 YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE---D 240
EP G ++W +NI Y +D + D
Sbjct: 369 LEPDSGT------------VKWSE-----------------NANIGY-YAQDHAYDFEND 398
Query: 241 I---EWAA--KQAYVHEFILSLPCGYETLV----------DDDL------LSGGQKQRIA 279
+ +W + +Q E V DD+ LSGG+K R+
Sbjct: 399 LTLFDWMSQWRQ----------EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRML 448
Query: 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT-KRTVIVIAH------RL 332
+ +++ P +L++DE T+ +D ES + +L + + T+I ++H L
Sbjct: 449 FGKLMMQKPNVLVMDEPTNHMDMES-------IESLNMALEKYEGTLIFVSHDREFVSSL 501
Query: 333 STIKAVDRIVVIDDGRIIEV-GNHAELL 359
+T RI+ I +++ G + E L
Sbjct: 502 AT-----RIIEITPDGVVDFSGTYEEYL 524
|
Length = 530 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 31/215 (14%)
Query: 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--------LYEPSDGQIYIDGFPLT 199
+L ++ L I+ +VVA+VG SG+GK+T + ++L Y P G++ +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEV-----P 451
Query: 200 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPC 259
+ L EP+ ++ I ++ D+ A ++ LS
Sbjct: 452 KNTVSALIPGE----YEPEFGEVTILEHL-RSKTGDLN-------AAVEILNRAGLSDAV 499
Query: 260 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319
Y + LS GQK+R +A+ + P +LL+DE + LD + V + L
Sbjct: 500 LYRRKFSE--LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAR-- 555
Query: 320 KTKRTVIVIAHRLSTIKAV--DRIVVIDDGRIIEV 352
+ T+IV+ HR A+ D ++++ G++
Sbjct: 556 EAGITLIVVTHRPEVGNALRPDTLILVGYGKVPVN 590
|
Length = 593 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 6e-07
Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 41/206 (19%)
Query: 164 AIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ-EPQLL 220
A++G+SG+GK+T +++L + +G I I GFP + G+ Q +
Sbjct: 910 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS---GYCEQNDIHSP 966
Query: 221 QMDIKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD-DDL------ 269
Q+ ++ +++Y PK+V E+ K +V E + LV+ D+L
Sbjct: 967 QVTVRESLIYSAFLRLPKEVSKEE-----KMMFVDEVM--------ELVELDNLKDAIVG 1013
Query: 270 ------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 323
LS Q++R+ IA ++ +P+I+ +DE TS LD+ + V+ +RN T R
Sbjct: 1014 LPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI---VMRTVRNTVDTGR 1070
Query: 324 TVIVIAHRLS--TIKAVDRIVVIDDG 347
TV+ H+ S +A D ++++ G
Sbjct: 1071 TVVCTIHQPSIDIFEAFDELLLMKRG 1096
|
Length = 1470 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-06
Identities = 59/245 (24%), Positives = 106/245 (43%), Gaps = 39/245 (15%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
V +SF +R I +++ LT+ ++ AI+G SG GK+T + L+ P G+I
Sbjct: 8 VDMRGVSF---TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 192 YIDGFPLTDLDIRWL---REKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQ 247
DG + + L R+++ + Q L M++ N+ Y + +
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQ-------LPA 117
Query: 248 AYVHEFIL-SLPC----GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
+H ++ L G L+ + LSGG +R A+ARAI +P +++ DE D
Sbjct: 118 PLLHSTVMMKLEAVGLRGAAKLMPSE-LSGGMARRAALARAIALEPDLIMFDEPFVGQDP 176
Query: 303 ESEHYVKGVL--------HALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
GVL AL C +V++H + + ++ D ++ D +I+ G
Sbjct: 177 ----ITMGVLVKLISELNSALGVTC------VVVSHDVPEVLSIADHAYIVADKKIVAHG 226
Query: 354 NHAEL 358
+ L
Sbjct: 227 SAQAL 231
|
Length = 269 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 7/82 (8%)
Query: 270 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 329
LSGG ++ A+ RA++ +P +LLLDE T+ LD E+ +++G L + ++I I+
Sbjct: 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQG------SIIFIS 210
Query: 330 HRLSTIKAV-DRIVVIDDGRII 350
H S I+ + RIV +D G+++
Sbjct: 211 HDRSFIRNMATRIVDLDRGKLV 232
|
Length = 635 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 270 LSGGQKQRIAIARAILR---DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 326
LSGG+ QRI +A+ + + + +LDE T+ L + VL L TV+
Sbjct: 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLV---DKGNTVV 226
Query: 327 VIAHRLSTIKAVDRIV 342
VI H L IK D I+
Sbjct: 227 VIEHNLDVIKCADWII 242
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 6e-06
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
V+ +NI+F + + + ++ +++ E +AIVG SGSGKS L+RL E + G +
Sbjct: 15 VENLNIAFMQ-EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV 73
Query: 192 YIDGFPL 198
D L
Sbjct: 74 QCDKMLL 80
|
Length = 623 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 6e-06
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
Query: 270 LSGGQKQRIAIARAILR---DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 326
LSGG+ QR+ +A+ + + + +LDE T+ L + + VLH L + TVI
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK---GNTVI 879
Query: 327 VIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELL-----HKGRLYAKLVKR 371
VI H L IK D I+ + G I+ G E+ + G+ K +KR
Sbjct: 880 VIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLKKYLKR 935
|
Length = 935 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 7e-06
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 270 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 329
LSGG +Q++ I R +L P IL+LDE T +D ++ + ++ L K + +I+I+
Sbjct: 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAEL---AKKDKGIIIIS 448
Query: 330 HRLSTIKAV-DRIVVIDDGRIIEVGNHAE 357
+ + + DRI+V+ +G + + +
Sbjct: 449 SEMPELLGITDRILVMSNGLVAGIVDTKT 477
|
Length = 491 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 42/226 (18%)
Query: 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR--- 204
P +N V T+ E++ + GL G+G++ + +L + G + +DG + R
Sbjct: 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVV---TRSPQ 322
Query: 205 -WLREKIGFVGQEPQ----LLQMDIKSNIMYGCPKDV---KNEDIEWAAKQAYVHEFI-- 254
L I ++ ++ + +L M +K N M ++ A +Q V +FI
Sbjct: 323 DGLANGIVYISEDRKRDGLVLGMSVKEN-MSLTALRYFSRAGGSLKHADEQQAVSDFIRL 381
Query: 255 -------LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 307
+ G LLSGG +Q++AIAR ++ P +L+LDE T +D +
Sbjct: 382 FNIKTPSMEQAIG--------LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGA--- 430
Query: 308 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAV----DRIVVIDDGRI 349
K ++ L N K + I++ S + V DRI+V+ +GRI
Sbjct: 431 -KKEIYQLINQFKAEGLSIILVS--SEMPEVLGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 31/216 (14%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD---LDIRW 205
ILN+V ++ + A++G SG+GK+T +N+ L E + G L + LD +
Sbjct: 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNV---LAERVTTGVITGGDRLVNGRPLDSSF 834
Query: 206 LREKIGFVGQEP-QLLQMDIKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILSLPCG 260
R IG+V Q+ L ++ ++ + PK V + K YV E I L
Sbjct: 835 QR-SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSE-----KMEYVEEVIKLL--E 886
Query: 261 YETLVDDDL------LSGGQKQRIAIARAILRDPAILL-LDEATSALDSESEHYVKGVLH 313
E+ D + L+ Q++R+ I ++ P +LL LDE TS LDS++ +
Sbjct: 887 MESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQT---AWSICK 943
Query: 314 ALRNDCKTKRTVIVIAHRLSTI--KAVDRIVVIDDG 347
+R + ++ H+ S I + DR++++ G
Sbjct: 944 LMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 262 ETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319
E ++D D+ LSGG+ QR+AIA A+LRD DE TS LD V ++ L
Sbjct: 203 ENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEG- 261
Query: 320 KTKRTVIVIAHRLSTIKAVDRIVVI 344
+ V+V+ H L+ + + V I
Sbjct: 262 ---KYVLVVEHDLAVLDYLADNVHI 283
|
Length = 590 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
Query: 271 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 330
SGG + RIA+ARA+ +P +LLLDE T+ LD + +++ L K +T IV++H
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL------LKWPKTFIVVSH 399
|
Length = 718 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 33/176 (18%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
N+++ + ++ ++ + +A++G +G GK+T + L+L + G+I+
Sbjct: 324 NVNYQIDGKQ---LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCG- 379
Query: 196 FPLTDLDIRWL---REKIGFVGQEPQLLQMDI----KSNIMY-GCPKDVKNEDIEWAAKQ 247
T L++ + R ++ +P+ MD K +M G P+ V
Sbjct: 380 ---TKLEVAYFDQHRAEL-----DPEKTVMDNLAEGKQEVMVNGRPRHV----------L 421
Query: 248 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303
Y+ +F+ P T V LSGG++ R+ +AR L+ +L+LDE T+ LD E
Sbjct: 422 GYLQDFLFH-PKRAMTPVK--ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVE 474
|
Length = 635 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 4e-05
Identities = 41/200 (20%), Positives = 93/200 (46%), Gaps = 25/200 (12%)
Query: 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 207
P ++ +C+ + E ++G++G+GK+T +L + G + G + +I +
Sbjct: 1953 PAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVH 2011
Query: 208 EKIGFVGQEPQLLQMD-----IKSNIMYGCPKDVKNEDIE----WAAKQAYVHEFILSLP 258
+ +G+ PQ +D + +Y + V E+IE W+ + + + L
Sbjct: 2012 QNMGYC---PQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA 2068
Query: 259 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318
Y SGG K++++ A A++ P ++LLDE T+ +D ++ + + ++
Sbjct: 2069 GTY---------SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSI--- 2116
Query: 319 CKTKRTVIVIAHRLSTIKAV 338
+ R V++ +H + +A+
Sbjct: 2117 IREGRAVVLTSHSMEECEAL 2136
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 7e-05
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 18/155 (11%)
Query: 153 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 212
+ +T + + I G +G GKS+ + ++ + +PS G IY + ++ + +
Sbjct: 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYC----TY 74
Query: 213 VGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL-- 269
+G L L+M + N+ + E + A +H F L L+D+
Sbjct: 75 IGHNLGLKLEMTVFENLKFWSEIYNSAETL-----YAAIHYFKL------HDLLDEKCYS 123
Query: 270 LSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304
LS G ++ +AIAR I + LLDE + L E+
Sbjct: 124 LSSGMQKIVAIARLIACQSDLWLLDEVETNLSKEN 158
|
Length = 195 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 45/212 (21%), Positives = 94/212 (44%), Gaps = 25/212 (11%)
Query: 152 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREKI 210
++ L + A E++ + G+ G+G++ L L G+I ++G + L L +
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340
Query: 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWA--AKQAYVHE---FILSLPCGYE--- 262
++ ++ Q + + + + + N W A++ V E L++ +
Sbjct: 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA 400
Query: 263 --TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGVLHALRND 318
TL SGG +Q++ IA+ + P +L++DE T +D + ++ Y +R+
Sbjct: 401 ARTL------SGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIY-----QLIRSI 449
Query: 319 CKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRI 349
V+ I+ L I + DR++V+ G I
Sbjct: 450 AAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 8e-05
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 252 EFILSLPCGYETLV-DDDLLSGGQKQRIAIARAI---LRDPAILLLDEATSALDSESEHY 307
F++ + GY TL LSGG+ QRI +A I L + +LDE + L
Sbjct: 119 GFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGL-TGVLYVLDEPSIGLHPRDNDR 177
Query: 308 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 342
+ L LR+ TV+V+ H TI+A D ++
Sbjct: 178 LIETLKRLRD---LGNTVLVVEHDEDTIRAADHVI 209
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 268 DLLSGGQKQRIAIAR--AILR-DPA-ILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 323
LLSGG+K A+A AI + PA +LDE +ALD + V+ V ++ K +
Sbjct: 1065 SLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALD---DANVERVARLIKEMSKETQ 1121
Query: 324 TVIVIAHRLSTIKAVDRIVVI 344
IVI HR T++A DR+V +
Sbjct: 1122 F-IVITHRKGTMEAADRLVGV 1141
|
Length = 1163 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 270 LSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 326
LSGG+ QRI +A+ + + + +LDE T+ L + +K +L L+ TV+
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDD---IKKLLEVLQRLVDKGNTVV 886
Query: 327 VIAHRLSTIKAVDRIV 342
VI H L IK D I+
Sbjct: 887 VIEHNLDVIKTADYII 902
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Query: 252 EFILSLPCGYETLVDD-DLLSGGQKQRIAIARAI---LRDPAILLLDEATSALDSESEHY 307
F++ + Y +L LSGG+ QRI +A I L + +LDE + L
Sbjct: 470 GFLIDVGLDYLSLSRAAGTLSGGEAQRIRLATQIGSGLTG-VLYVLDEPSIGLHQRDNRR 528
Query: 308 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH-AELLHKGRLYA 366
+ L LR+ T+IV+ H TI+A D ++ I G G H E++ G
Sbjct: 529 LINTLKRLRD---LGNTLIVVEHDEDTIRAADYVIDIGPG----AGEHGGEVVASGTP-- 579
Query: 367 KLVKRQTESLT 377
+ + +SLT
Sbjct: 580 EEILANPDSLT 590
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 270 LSGGQKQRIAIARAIL---RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 326
LSGG+ QR+ +A +L + P + +LDE T+ L + H +K +++ L++ TV+
Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHT---HDIKALIYVLQSLTHQGHTVV 866
Query: 327 VIAHRLSTIKAVDRIV 342
+I H + +K D ++
Sbjct: 867 IIEHNMHVVKVADYVL 882
|
Length = 1809 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 270 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 329
LS G+ ++ + +A++ +P +L+LDE LD S + +L +L ++ T++++
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLH---QSGITLVLVL 192
Query: 330 HRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 368
+R I V V+ D + E G E+L + L A+L
Sbjct: 193 NRFDEIPDFVQFAGVLADCTLAETGEREEILQQA-LVAQL 231
|
Length = 490 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 20/101 (19%)
Query: 248 AYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIA-----RAILRDPAILLLDEATSALD 301
A V E I + LSGG+K+ A+A ++ P + +LDE LD
Sbjct: 65 AAVSAELIFTRLQ----------LSGGEKELSALALILALASLKPRP-LYILDEIDRGLD 113
Query: 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 342
+ + VIVI H + D+++
Sbjct: 114 PRDGQALAEAILEHLVK---GAQVIVITHLPELAELADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 273 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 330
G K R+ +A+A+ +P ILLLDE T+ LD + +++ VL+ RN T+I+I+H
Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE-RNS-----TMIIISH 210
|
Length = 530 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 135 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 194
++I + S P+L++ L IE NE V +VG +G+GKST + +L DG+I +
Sbjct: 4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYE 63
|
Length = 635 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 5e-04
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 268 DLLSGGQKQRIAIA--RAILR-DPA-ILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 323
D LSGG+K +A+A AI + PA LLDE +ALD + V V + L+ +K
Sbjct: 1077 DNLSGGEKTLVALALIFAIQKYRPAPFYLLDEIDAALD---DQNVSRVANYLKE--LSKN 1131
Query: 324 T-VIVIAHRLSTIKAVDRIV 342
IVI+ R ++ DR+V
Sbjct: 1132 AQFIVISLREEMLEKADRLV 1151
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin, a member of the SMC protein family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-04
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 268 DLLSGGQKQRIAIAR--AILR-DPA-ILLLDEATSALD-SESEHYVKGVLHALRNDCKTK 322
LLSGG+K A+A AI R P+ +LDE +ALD + E + + +L + +
Sbjct: 112 SLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFAR-LLKEFSKETQF- 169
Query: 323 RTVIVIAHRLSTIKAVDRIV 342
IVI HR T++A DR+
Sbjct: 170 ---IVITHRKGTMEAADRLY 186
|
Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 197 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 7e-04
Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Query: 254 ILSLPCGYETLVDDDLL---SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 310
IL L +T+V D+++ SGGQK+R+ I+ L +DE ++ LDS + + +
Sbjct: 318 ILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVK 377
Query: 311 VLHALRNDCKTKRTVIV--IAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 359
L + + T+ TV++ + T D I+++ +G+I+ G +L
Sbjct: 378 CLQQIVH--LTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHIL 426
|
Length = 1470 |
| >gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 0.001
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 270 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 326
LSGG+ QR+ +A+ + + + +LDE T+ L E + VLH L + TV+
Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDK---GNTVV 887
Query: 327 VIAHRLSTIKAVDRIV 342
VI H L IK D I+
Sbjct: 888 VIEHNLDVIKTADWII 903
|
Length = 943 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 19/103 (18%)
Query: 270 LSGGQKQRIAIARAI---LRDPAILLLDEATSALDSESEHYVKGVLHALR---NDCKTKR 323
LSGG+ QRI +A I L + +LDE + L + L LR N
Sbjct: 482 LSGGEAQRIRLATQIGSGLTG-VLYVLDEPSIGLHQRDNERLIETLKRLRDLGN------ 534
Query: 324 TVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLH 360
TVIV+ H TI+A D I+ I G I+ G ELL
Sbjct: 535 TVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577
|
Length = 935 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 377 | |||
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 100.0 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 100.0 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 100.0 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 100.0 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 100.0 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.98 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.97 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.97 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.97 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.96 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.96 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.96 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.96 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.96 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.96 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.95 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.95 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.95 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.95 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.94 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.94 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.94 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.94 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.94 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.93 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.93 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.91 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.9 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.9 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.88 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.88 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.87 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.87 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.86 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.86 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.85 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.85 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.84 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.83 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.81 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.81 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.78 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.78 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.78 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.76 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.74 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.74 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.73 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.72 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.72 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.67 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.66 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.63 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.61 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.6 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.6 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.59 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.52 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.51 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.51 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.49 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.46 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.45 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.44 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.44 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 99.43 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.4 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.39 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.37 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.34 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.32 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.32 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.31 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.28 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.27 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.27 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.23 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.22 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.21 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.21 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.21 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.19 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.1 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 99.09 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.09 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 99.08 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 99.0 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.95 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.93 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.9 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.89 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.86 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.83 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.82 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.82 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.78 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 98.78 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.76 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.74 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.71 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.7 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.67 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 98.67 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.66 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.66 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.65 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.64 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.64 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.61 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.6 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.57 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.56 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 98.49 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.48 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.48 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.44 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 98.44 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.39 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.39 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 98.39 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.38 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.37 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.36 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.35 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.35 | |
| COG3044 | 554 | Predicted ATPase of the ABC class [General functio | 98.35 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.33 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 98.29 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 98.28 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 98.27 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 98.26 |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-83 Score=646.51 Aligned_cols=366 Identities=47% Similarity=0.762 Sum_probs=343.3
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+||||+|++|+++.+||.+..++..+...+.....+.+.....+......+.++++|++++..|.||+|.+.+|++|..+
T Consensus 337 ~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~ 416 (716)
T KOG0058|consen 337 MRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQ 416 (716)
T ss_pred hhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHH
Confidence 79999999999999999999999999988887777777777777788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccc-cccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ-RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
+..++..++..+.+++++..|.+|+++++|.+|..+.. +...| ...+.|+|+||+|+||.+++.++|+|+||+|+||
T Consensus 417 ~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~--G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pG 494 (716)
T KOG0058|consen 417 LGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT--GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPG 494 (716)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC--CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCC
Confidence 99999999999999999999999999999999875432 33223 3456899999999999988889999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
|++|||||||+||||++++|.++|+|++|+|++||+|+.+++..++|++||+|.|+|.||++||+|||.||.. ..++++
T Consensus 495 e~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~-~~t~e~ 573 (716)
T KOG0058|consen 495 EVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD-NATDEE 573 (716)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-CCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999976 788999
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
+..+++.+++++|+..+|+||+|.+|+ .+|||||||||||||||++||.||||||+||+||.+++..+.+.|.++.
T Consensus 574 i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~-- 651 (716)
T KOG0058|consen 574 IEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM-- 651 (716)
T ss_pred HHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh--
Confidence 999999999999999999999999996 4899999999999999999999999999999999999999999998874
Q ss_pred CCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcC-HHHHHHHHHHhh
Q 017091 319 CKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG-RLYAKLVKRQTE 374 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~-~~~~~~~~~~~~ 374 (377)
+++|||+|+|++++++.||+|+++++|+++|.|+|+|++++. +.|.++.++|..
T Consensus 652 --~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 652 --QGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLD 706 (716)
T ss_pred --cCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhcc
Confidence 478999999999999999999999999999999999999987 799999998754
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-78 Score=630.15 Aligned_cols=365 Identities=39% Similarity=0.609 Sum_probs=339.6
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+.+.|.++..+|++...+......+..........+..++..+..++++|+|+++|++|.+|+|.++||.++...
T Consensus 342 i~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~ 421 (709)
T COG2274 342 IETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGY 421 (709)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 68999999999999999999999999988888777777777788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+.+++..+.++++...+.+|+.++++.|+|...+......+...+.|+++||+|+|+.. +.++|+|+||+|++||
T Consensus 422 f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge 500 (709)
T COG2274 422 FISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGE 500 (709)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCC
Confidence 999999999999999999999999999999998854322112234455689999999999865 3479999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+|+||||||||+|+|+|+|+|++|+|++||.|+..++...+|++||||+|++.+|++||+|||+++.+ ..+++++
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p-~~~~e~i 579 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP-EATDEEI 579 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999954 6778999
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.+++++++..+|.||+|.+++ .+||||||||++|||||+++|+|||||||||+||+.+++.+.+.|.++.
T Consensus 580 ~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--- 656 (709)
T COG2274 580 IEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--- 656 (709)
T ss_pred HHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh---
Confidence 99999999999999999999999984 6899999999999999999999999999999999999999999999984
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHH
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 372 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 372 (377)
.|+|+|+|||++++++.||||+||++|+|+++|+|+|+++.++.|.+++..|
T Consensus 657 -~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~~q 708 (709)
T COG2274 657 -QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQ 708 (709)
T ss_pred -cCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHhcc
Confidence 5799999999999999999999999999999999999999999999999875
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-75 Score=618.21 Aligned_cols=367 Identities=44% Similarity=0.629 Sum_probs=337.4
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
||||++|++|+++.+.|.+..+...+...+...+.++..++.+.+..+..++.+|+|++++..|.+++.+++-.++.+..
T Consensus 857 IrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ 936 (1228)
T KOG0055|consen 857 IRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSF 936 (1228)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999998988888888888899999999999999999999998766655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc-cccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
-...+........++..+..|+.++++++|.+|..+.+. .+...+...+.|+++||+|+||.+++.+||+|+||+|++|
T Consensus 937 ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~G 1016 (1228)
T KOG0055|consen 937 TAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAG 1016 (1228)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCC
Confidence 555566777778899999999999999999998644322 2222344567899999999999988889999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
+.+||||||||||||.+.+|-++|+|++|.|.+||+|+++++++++|++||.|.|+|.||+.||+|||+||.. +.+.++
T Consensus 1017 qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~-~vs~~e 1095 (1228)
T KOG0055|consen 1017 QTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE-EVSEEE 1095 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC-CCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999943 478999
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
+.++++.+++++|+..+|.||||.+|+ .+||||||||+|||||+++||+||||||+||+||.++++.+++.|.+..
T Consensus 1096 Ii~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-- 1173 (1228)
T KOG0055|consen 1096 IIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-- 1173 (1228)
T ss_pred HHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--
Confidence 999999999999999999999999994 6899999999999999999999999999999999999999999999984
Q ss_pred CCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 319 CKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
.|+|+|+|+|+++++++||.|+|+++|+|+|.|+|++|++.++.|.++++.|.
T Consensus 1174 --~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1174 --EGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred --cCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhCCCchHHHhhhcc
Confidence 58999999999999999999999999999999999999999999999998775
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-72 Score=595.81 Aligned_cols=360 Identities=34% Similarity=0.467 Sum_probs=325.4
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+++..+|++...+..+...+..+.......+...+..+..++++++|++++..|.+|+|.++++..+...
T Consensus 324 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~ 403 (686)
T TIGR03797 324 ISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGS 403 (686)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999998888877777666665555566666777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..++.+..+.+|+.++++.+++.... ........+.|+++||+|+|++. ++++|+|+||+|++||
T Consensus 404 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge 480 (686)
T TIGR03797 404 FSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA--KTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGE 480 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC--cCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCC
Confidence 99999999999999999999999999999877653211 11111223469999999999753 3579999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+||||||||||+|+|+|+++|++|+|.+||+++.+++..++|++||||||++.+|++|++|||.++.+ .+++++
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~--~~~e~i 558 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP--LTLDEA 558 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC--CCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999854 678999
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
+++++.++++++++.+|.|++|.+++ .+||||||||++|||||+++|++||||||||+||+.+++++.+.|+++
T Consensus 559 ~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---- 634 (686)
T TIGR03797 559 WEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---- 634 (686)
T ss_pred HHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----
Confidence 99999999999999999999999974 689999999999999999999999999999999999999999999875
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHH
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 372 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 372 (377)
++|+|+|||+++.++.||+|++|++|++++.|+|++++++++.|++++..|
T Consensus 635 --~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~~q 685 (686)
T TIGR03797 635 --KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLARRQ 685 (686)
T ss_pred --CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHhc
Confidence 469999999999999999999999999999999999999999999998865
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-72 Score=583.25 Aligned_cols=364 Identities=27% Similarity=0.405 Sum_probs=310.5
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH---------
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQL--------- 72 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l--------- 72 (377)
+++||+|+.|+.+.++|.+..++..+...+..+...........+..+..+++++++++.+. |.+|+|.+
T Consensus 212 ~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~ 290 (588)
T PRK11174 212 LETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAG 290 (588)
T ss_pred hHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHH
Confidence 58999999999999999999998888777665554444444444444444444455555443 77887754
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccc-cccccEEEEEEEEEcCCCCCCCcee
Q 017091 73 TKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ-RLMGHVQFVNISFHYPSRPTVPILN 151 (377)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~vL~ 151 (377)
++++++...+..|+..+...+..+..+..+++|+.++++.+++..... ....+ .....|+++||+|.|+++ +++|+
T Consensus 291 ~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~ 367 (588)
T PRK11174 291 FFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPDG--KTLAG 367 (588)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccCC--Ceeee
Confidence 223356677889999999999999999999999999998865432111 11111 122359999999877543 46999
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcC
Q 017091 152 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 231 (377)
Q Consensus 152 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~ 231 (377)
|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||+++.+++..++|++|+||||+|++|++||+|||.++
T Consensus 368 ~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g 446 (588)
T PRK11174 368 PLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLG 446 (588)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcC
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHH
Q 017091 232 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309 (377)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~ 309 (377)
. ++.++++++++++.++++++++.+|.|++|.+++ .+||||||||++|||||+++|+|||||||||+||+++++.+.
T Consensus 447 ~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~ 525 (588)
T PRK11174 447 N-PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM 525 (588)
T ss_pred C-CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 5 4678999999999999999999999999999975 589999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHhhc
Q 017091 310 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTES 375 (377)
Q Consensus 310 ~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 375 (377)
+.|.++. +++|+|+|||+++.++.||+|++|++|++++.|+|++++++++.|++++..|.+.
T Consensus 526 ~~l~~~~----~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~~~q~~~ 587 (588)
T PRK11174 526 QALNAAS----RRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQEE 587 (588)
T ss_pred HHHHHHh----CCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHHHHhhcC
Confidence 9998874 4789999999999999999999999999999999999999999999999988764
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-72 Score=581.13 Aligned_cols=364 Identities=44% Similarity=0.717 Sum_probs=330.7
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
++++|+|+.++.+.+++.+..++......+..+..+...+....+..+..++++++|++++..+.+++|.+++++.|...
T Consensus 201 ~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 280 (567)
T COG1132 201 IRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLR 280 (567)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHH
Confidence 57899999999999999998888888777666666666666677777788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..++.+..+++|++++++.+++....... .....+.|+++||+|+|+++ +++|+|+||++++||
T Consensus 281 ~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~~~~~~I~f~~vsf~y~~~--~~vl~~is~~i~~Ge 356 (567)
T COG1132 281 LLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LKDTIGSIEFENVSFSYPGK--KPVLKDISFSIEPGE 356 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CCCCCCeEEEEEEEEEcCCC--CccccCceEEEcCCC
Confidence 99999999999999999999999999999987653322111 12233469999999999852 479999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++|||||||||||||+++|+|+++|++|+|.+||+|+++++...+|++|+||||++++|++||+|||.+|.+ +.+++++
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~-~at~eei 435 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP-DATDEEI 435 (567)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999964 5789999
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.+++++++.++|.|++|.+++ .+||||||||++||||++++|++||||||||+||+.+++.+++.+.++.
T Consensus 436 ~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--- 512 (567)
T COG1132 436 EEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--- 512 (567)
T ss_pred HHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh---
Confidence 99999999999999999999999984 5899999999999999999999999999999999999999999999774
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHhh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 374 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 374 (377)
+++|+|+|+|++++++.||+|+||++|++++.|+|++++++++.|+++|..|..
T Consensus 513 -~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~~~ 566 (567)
T COG1132 513 -KGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQGG 566 (567)
T ss_pred -cCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHhhc
Confidence 367999999999999999999999999999999999999999999999998753
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-73 Score=605.15 Aligned_cols=367 Identities=43% Similarity=0.650 Sum_probs=332.9
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+|||.+|+.|+.+.++|.+..+...+...+...+.++..++..++.....++.+|+|+.++..+..++|+++..+..+..
T Consensus 220 iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~ 299 (1228)
T KOG0055|consen 220 IRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLI 299 (1228)
T ss_pred hhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhh
Confidence 68999999999999999999999999998888888888887777777888999999999999999999987655544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc-cccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
-...+....+.+..+..+..++.+++++++..|...... .+.......+.|+++||+|+||.+++.++|+|+||+|++|
T Consensus 300 g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G 379 (1228)
T KOG0055|consen 300 GGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSG 379 (1228)
T ss_pred hhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCC
Confidence 445566778888999999999999999999887644322 1212223456899999999999987789999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
+++||||||||||||++++|.|+|+|++|+|++||.|+..++.+++|.+||.|+|+|.||+.||+|||.||. ++.+.++
T Consensus 380 ~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~-~dat~~~ 458 (1228)
T KOG0055|consen 380 QTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGK-PDATREE 458 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCC-CcccHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999995 5789999
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
+.++++.+++++|+..+|.|++|.+++ .+|||||||||||||||+++|+|||||||||+||+++++.+++.|.+..
T Consensus 459 i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-- 536 (1228)
T KOG0055|consen 459 IEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-- 536 (1228)
T ss_pred HHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--
Confidence 999999999999999999999999985 4799999999999999999999999999999999999999999999884
Q ss_pred CCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 319 CKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
.|+|.|+|+||+++++.||+|++|++|+|+|.|+|+||+..++.|.+++..|.
T Consensus 537 --~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 537 --KGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQE 589 (1228)
T ss_pred --cCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999998763
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-72 Score=593.26 Aligned_cols=362 Identities=30% Similarity=0.459 Sum_probs=323.1
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|.+...+..+...+..+.......+...+..+..++++++|++++..|.+|+|.++++..+...
T Consensus 344 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~ 423 (708)
T TIGR01193 344 IETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSY 423 (708)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999888888777766655555555555556667788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..++.+..+.+|+.++++.+++..........+...+.|+++||+|+|+++ +++|+|+||+|++||
T Consensus 424 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~isl~i~~G~ 501 (708)
T TIGR01193 424 FLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYG--SNILSDISLTIKMNS 501 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCC--CcceeceeEEECCCC
Confidence 999999999999999999999999999998876543211101112233469999999999743 479999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
.+||+||||||||||+|+|+|+++|++|+|++||.++.+++..++|++||||||++.+|++|++|||.++..++.+++++
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i 581 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEI 581 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999984346778899
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.++++++++.+|.|++|.+++ .+||||||||++||||++++|++||||||||+||+.+++.+.+.|+++
T Consensus 582 ~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---- 657 (708)
T TIGR01193 582 WAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---- 657 (708)
T ss_pred HHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh----
Confidence 99999999999999999999999874 689999999999999999999999999999999999999999999875
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 370 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 370 (377)
+++|+|+|||+++.++.||+|++|++|++++.|+|++++++++.|+++++
T Consensus 658 -~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 658 -QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred -cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 36899999999999999999999999999999999999999999998874
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-71 Score=578.48 Aligned_cols=365 Identities=35% Similarity=0.542 Sum_probs=326.9
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.++.+.++|++..++..+...+..+..........++..+..++++++|++.+..|.+|+|+++++..+...
T Consensus 214 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~ 293 (582)
T PRK11176 214 HKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIA 293 (582)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999988887777666655555666666677778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..++.+..+.+|+.++++.+++.... ....++..+.|+++||+|+|+++ ++++|+|+||+|++||
T Consensus 294 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~--~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~ 370 (582)
T PRK11176 294 LMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG--KRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGK 370 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC--CcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCC
Confidence 99999999999999999999999999999876543211 11112223469999999999754 3579999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+||||||||||+++|+|+++|++|+|++||+++.+++..++|++|+||||++.+|++|++|||.++.+...+++++
T Consensus 371 ~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i 450 (582)
T PRK11176 371 TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQI 450 (582)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985444678999
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
+++++.++++++++++|.|++|.+++ .+||||||||++|||||+++|++||||||||+||++++..+.+.|.++.
T Consensus 451 ~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--- 527 (582)
T PRK11176 451 EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--- 527 (582)
T ss_pred HHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh---
Confidence 99999999999999999999999985 5799999999999999999999999999999999999999999999874
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
+++|+|+|||+++.++.||+|++|++|++++.|+|++++++++.|++++..|.
T Consensus 528 -~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~~~ 580 (582)
T PRK11176 528 -KNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKMQF 580 (582)
T ss_pred -CCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999998764
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-71 Score=591.78 Aligned_cols=360 Identities=31% Similarity=0.492 Sum_probs=323.1
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||++|.|+.+.++|.+...+..+...+..+.......+...+..+..++++++|++++..|.+|+|.++++..+...
T Consensus 342 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~ 421 (710)
T TIGR03796 342 IETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSS 421 (710)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998888888777776666666666666667777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc----c-cccc-ccccccEEEEEEEEEcCCCCCCCceeeeeE
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS----E-GVKL-QRLMGHVQFVNISFHYPSRPTVPILNHVCL 155 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~----~-~~~~-~~~~~~i~~~~v~~~y~~~~~~~vL~~isl 155 (377)
+..|+..+...+..++.+..+.+|+.++++.+++..... . .... +...+.|+++||+|+|++. ++++|+|+||
T Consensus 422 ~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl 500 (710)
T TIGR03796 422 FLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSL 500 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeE
Confidence 999999999999999999999999999998876543211 0 0111 1223469999999999854 3579999999
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 235 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 235 (377)
+|++||++||+||||||||||+|+|+|+++|++|+|.+||.|+.+++..++|++||||||++.+|++|++|||.++. ++
T Consensus 501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~-~~ 579 (710)
T TIGR03796 501 TLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWD-PT 579 (710)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999874 35
Q ss_pred CCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHH
Q 017091 236 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 313 (377)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~ 313 (377)
.+++++.++++.++++++++.+|.|++|.+++ .+||||||||++|||||+++|++||||||||+||+.+++++.+.|+
T Consensus 580 ~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~ 659 (710)
T TIGR03796 580 IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR 659 (710)
T ss_pred CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 77899999999999999999999999999874 6899999999999999999999999999999999999999999987
Q ss_pred HhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 017091 314 ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 369 (377)
Q Consensus 314 ~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 369 (377)
+ .++|+|+|||+++.+..||+|++|++|++++.|+|++++++++.|++++
T Consensus 660 ~------~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 660 R------RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred h------cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 5 2689999999999999999999999999999999999999999999876
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-71 Score=587.87 Aligned_cols=359 Identities=42% Similarity=0.692 Sum_probs=317.4
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+|+.|+.+.++|.+..++..+...+.....+........+..+..++++++|++++..|.+|+|.+++++.|...
T Consensus 350 ~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~ 429 (711)
T TIGR00958 350 MRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQ 429 (711)
T ss_pred hHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999998888776665555544444445555667778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..++..+..++++..+.+|++++++.+++...... ..+.+..+.|+++||+|+|++++++++|+|+||+|+|||
T Consensus 430 l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~-~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge 508 (711)
T TIGR00958 430 LGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT-LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGE 508 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC-CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCC
Confidence 9999999999999999999999999999988765332111 111122346999999999986434579999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+||||||||||+++|+|+++|++|+|.+||+++.+++..++|++|+||||+|.+|++|++|||.++.+ +.+++++
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~-~~~~e~i 587 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT-DTPDEEI 587 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999854 5678899
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.++++++++++|.|++|.+++ .+||||||||++||||++++|+|+|||||||+||+++++.+.+ ...
T Consensus 588 ~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~----- 661 (711)
T TIGR00958 588 MAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS----- 661 (711)
T ss_pred HHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc-----
Confidence 99999999999999999999999985 5899999999999999999999999999999999999999888 221
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHH
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 368 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 368 (377)
.+++|+|+|||+++.++.||+|++|++|+|++.|+|++++++++.|+++
T Consensus 662 ~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 662 RASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred cCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhc
Confidence 2478999999999999999999999999999999999999998888875
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-70 Score=582.45 Aligned_cols=354 Identities=34% Similarity=0.509 Sum_probs=318.4
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+|+.|+.+.++|++...+..+...+..+.......+...+..+..++++++|++++..|.+|+|.++++..+...
T Consensus 334 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~ 413 (694)
T TIGR03375 334 LETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGR 413 (694)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999999888887777766666666666666777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..++.+..+.+|+.++++.+++..........+...+.|+++||+|+|++. .+++|+|+||+|++||
T Consensus 414 ~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~ 492 (694)
T TIGR03375 414 ALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGE 492 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCC
Confidence 999999999999999999999999999999876533211111111223469999999999753 3479999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+||||||||||+|+|+|+++|++|+|.+||.++.+++..++|++|+||||++.+|++|++|||.++.+ +.+++++
T Consensus 493 ~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~-~~~~~~i 571 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP-YADDEEI 571 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999853 5788999
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.++++++++.+|.|++|.+++ .+||||||||++|||||+++|+++|||||||+||+++++.+.+.|.++.
T Consensus 572 ~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--- 648 (694)
T TIGR03375 572 LRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--- 648 (694)
T ss_pred HHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh---
Confidence 99999999999999999999999974 5899999999999999999999999999999999999999999999874
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+++|+|+|||+++.++.||+|++|++|++++.|+|+++++.
T Consensus 649 -~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 649 -AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred -CCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 47899999999999999999999999999999999999764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-71 Score=616.94 Aligned_cols=368 Identities=34% Similarity=0.512 Sum_probs=324.3
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+|+.|+++.++|.+..+...+...+.....+.+.++...+..+..++++|+|++++..|.+|+|++++++.+...
T Consensus 1032 i~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~ 1111 (1466)
T PTZ00265 1032 MNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLF 1111 (1466)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999988888777777666777677777667778889999999999999999999988876655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-cccccc---cccccccEEEEEEEEEcCCCCCCCceeeeeEEE
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQF-LSEGVK---LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTI 157 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~-~~~~~~---~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i 157 (377)
...++..+...+..++.+..+++|++++++.+++... +..+.. .+...+.|+++||+|+|+++++.++|+|+||+|
T Consensus 1112 ~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i 1191 (1466)
T PTZ00265 1112 TGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSC 1191 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEE
Confidence 5566778888899999999999999999998664211 111111 112234699999999998644457999999999
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCC---------------------------------------------------
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEP--------------------------------------------------- 186 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--------------------------------------------------- 186 (377)
++|+++|||||||||||||+++|+|+|+|
T Consensus 1192 ~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1271 (1466)
T PTZ00265 1192 DSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDST 1271 (1466)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999998
Q ss_pred ---CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccc
Q 017091 187 ---SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 263 (377)
Q Consensus 187 ---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 263 (377)
++|+|++||+|+.+++..++|++||||+|+|.||++||+|||.+|.+ +.++++++++++.+++++++..+|.||+|
T Consensus 1272 ~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~-~at~eeI~~A~k~A~l~~fI~~LP~GydT 1350 (1466)
T PTZ00265 1272 VFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE-DATREDVKRACKFAAIDEFIESLPNKYDT 1350 (1466)
T ss_pred cCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCccccCC
Confidence 69999999999999999999999999999999999999999999954 67899999999999999999999999999
Q ss_pred ccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeE
Q 017091 264 LVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 264 ~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
.+++ .+||||||||++|||||+++|+|||||||||+||+++++.|++.|.++.. .+++|+|+|||+++.++.||+|
T Consensus 1351 ~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~--~~~~TvIiIaHRlsti~~aD~I 1428 (1466)
T PTZ00265 1351 NVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKD--KADKTIITIAHRIASIKRSDKI 1428 (1466)
T ss_pred ccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhc--cCCCEEEEEechHHHHHhCCEE
Confidence 9985 58999999999999999999999999999999999999999999998742 1478999999999999999999
Q ss_pred EEEeC----CEEE-EEcChHHHhh-cCHHHHHHHHHH
Q 017091 342 VVIDD----GRII-EVGNHAELLH-KGRLYAKLVKRQ 372 (377)
Q Consensus 342 ~~l~~----G~i~-~~g~~~~l~~-~~~~~~~~~~~~ 372 (377)
++|++ |+++ +.|+|+||++ +++.|++++..|
T Consensus 1429 vvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1429 VVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred EEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 99999 9955 8999999998 589999998765
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-70 Score=538.92 Aligned_cols=362 Identities=35% Similarity=0.533 Sum_probs=322.2
Q ss_pred hhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHH
Q 017091 3 RTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWL 82 (377)
Q Consensus 3 ~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~ 82 (377)
++||.||.|+++..+|.....+..+...+.....++++.....++....+.+.++|..-+.++.+|+|+++.+..+..++
T Consensus 225 e~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL 304 (591)
T KOG0057|consen 225 EIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQL 304 (591)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHH
Confidence 78999999999999999999999988887777777776666666666666677778888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcE
Q 017091 83 IYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEV 162 (377)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~ 162 (377)
..|+..++..+..+.++...+..++...+....... ...+.....+.|+++||+|+|+.+ +++|+++||+|++||.
T Consensus 305 ~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~--~~~~i~~~~~~I~F~dV~f~y~~k--~~iL~gvsf~I~kGek 380 (591)
T KOG0057|consen 305 SLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE--AALPIELFGGSIEFDDVHFSYGPK--RKVLKGVSFTIPKGEK 380 (591)
T ss_pred HhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh--ccCCcccCCCcEEEEeeEEEeCCC--CceecceeEEecCCCE
Confidence 999999999999999999888877765443222111 001112234569999999999854 4699999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHH
Q 017091 163 VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIE 242 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~ 242 (377)
+||+|+|||||||++|+|.++++ ++|+|++||++++.++.+.+|+-|||||||..||+.||.+||.||++ +.+++++.
T Consensus 381 VaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~-sas~eeV~ 458 (591)
T KOG0057|consen 381 VAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNP-SASDEEVV 458 (591)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCC-CcCHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999964 78899999
Q ss_pred HHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCC
Q 017091 243 WAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 320 (377)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~ 320 (377)
++++++++++.+.++|.||+|.+|+ ..|||||||||+||||++++|+|+++|||||+||.++++.+.+.+.+. .
T Consensus 459 e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~----~ 534 (591)
T KOG0057|consen 459 EACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV----M 534 (591)
T ss_pred HHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh----c
Confidence 9999999999999999999999985 579999999999999999999999999999999999999999999885 3
Q ss_pred CCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHhh
Q 017091 321 TKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 374 (377)
Q Consensus 321 ~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 374 (377)
.++|+|+|.||+++++.||+|+++++|++.+.|+|+|++...+.|+++|..|..
T Consensus 535 ~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~~~~ 588 (591)
T KOG0057|consen 535 SGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQTS 588 (591)
T ss_pred CCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhccccc
Confidence 589999999999999999999999999999999999999988899999987654
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-70 Score=542.69 Aligned_cols=365 Identities=32% Similarity=0.470 Sum_probs=320.5
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMI-GQVSPEQLTKYVLYCE 80 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~-g~lt~g~l~~~~~~~~ 80 (377)
+.|+|+||+.+...++..+.++++++..++.-+..-.......++..+..+++.++.++.... |.+|....+.++.+.-
T Consensus 189 L~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAP 268 (559)
T COG4988 189 LETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAP 268 (559)
T ss_pred hHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhH
Confidence 479999999999999999999999999988765443334455666666655555555555556 8999988877788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccc-ccccccEEEEEEEEEcCCCCCCCceeeeeEEEeC
Q 017091 81 WLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL-QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEA 159 (377)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~ 159 (377)
-++.|++.++..++.-+.+..+.+.++.+++.|++.......... ......++++|++|.|+++ +++++|+||++++
T Consensus 269 Eff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~ 346 (559)
T COG4988 269 EFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDG--KPALSDLNLTIKA 346 (559)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCC--CcccCCceeEecC
Confidence 888999999999999999999999999999987764322111111 1122246667999999875 3799999999999
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHH
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 239 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~ 239 (377)
|+.+||||+||||||||+++|+|+++|++|+|.+||+++.+++...+|++++||+|+|++|++|++|||.++.+ +.+++
T Consensus 347 g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~-~~s~e 425 (559)
T COG4988 347 GQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARP-DASDE 425 (559)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCC-cCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999854 67899
Q ss_pred HHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc
Q 017091 240 DIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 317 (377)
Q Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~ 317 (377)
++.++++.+++.++++. |.|+++.+++ ..|||||+|||++||||+++++++|+|||||+||.++++.+.+.|.++.
T Consensus 426 ~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~- 503 (559)
T COG4988 426 EIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELA- 503 (559)
T ss_pred HHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHH-
Confidence 99999999999999999 9999999984 6899999999999999999999999999999999999999999999996
Q ss_pred cCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHhh
Q 017091 318 DCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 374 (377)
Q Consensus 318 ~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 374 (377)
+++|+|+||||+..+..||+|++|++|++++.|+|+++.++++.|++++..|.+
T Consensus 504 ---~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~~ 557 (559)
T COG4988 504 ---KQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557 (559)
T ss_pred ---hCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHhc
Confidence 468999999999999999999999999999999999999999999999988764
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-70 Score=576.04 Aligned_cols=365 Identities=36% Similarity=0.527 Sum_probs=329.1
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|.+...+..+...+..+...........+..+..++++++|++++..|.+|+|.++++.++...
T Consensus 327 ~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~ 406 (694)
T TIGR01846 327 IETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGR 406 (694)
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999888887777766666666666667777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..++.+..+++|+.++++.+++.... .....+...+.|+++||+|+|++. ++++|+|+||+|++||
T Consensus 407 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~ 484 (694)
T TIGR01846 407 VTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGE 484 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCC
Confidence 99999999999999999999999999999887654321 111112223469999999999753 2469999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+|+||||||||+|+|+|+++|++|+|++||+++++++..++|++|+||||++.+|++|++|||.++.+ +.+++++
T Consensus 485 ~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~-~~~~~~i 563 (694)
T TIGR01846 485 FIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP-GAPFEHV 563 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999743 5678899
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.++++++++++|.|++|.+++ .+||||||||++|||||+++|++||||||||+||+.+++.+.+.|+++.
T Consensus 564 ~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--- 640 (694)
T TIGR01846 564 IHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--- 640 (694)
T ss_pred HHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh---
Confidence 99999999999999999999999874 6899999999999999999999999999999999999999999999873
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
+++|+|+|||+++.++.||+|++|++|++++.|+|++++++++.|++++..|.
T Consensus 641 -~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 693 (694)
T TIGR01846 641 -RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQQS 693 (694)
T ss_pred -CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHHhhc
Confidence 47899999999999988999999999999999999999999999999998764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-72 Score=539.78 Aligned_cols=366 Identities=35% Similarity=0.515 Sum_probs=333.0
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
++|||-||+|.++.++|.++..++.+...+......+++...+.+..+..+....+++|.|..+.+|+|+++.|..|..+
T Consensus 408 FETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliq 487 (790)
T KOG0056|consen 408 FETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQ 487 (790)
T ss_pred chhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHH
Confidence 58999999999999999999999988877776666666666677766666667777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..++..+..++......+++++++++++|..+.+...+.....+.|+++||+|.|.. ++++|+||||++.||+
T Consensus 488 Ly~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGk 565 (790)
T KOG0056|consen 488 LYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGK 565 (790)
T ss_pred HhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCC--CCceeecceEEecCCc
Confidence 99999999999999999999999999999988875443322233334568999999999975 3689999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
.+|+|||||+||||++|+|.++++.++|.|.+||+|++......+|++||.||||..||+.||..||.|+. +..++|++
T Consensus 566 tvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak-~~Asneev 644 (790)
T KOG0056|consen 566 TVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAK-PSASNEEV 644 (790)
T ss_pred EEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecC-CCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995 47889999
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCCC--CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~~--~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.+++++.+-.+|+||+|.+|+. .|||||||||||||+++++|.+++|||+||+||..+++.|+..|.++.
T Consensus 645 yaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlc--- 721 (790)
T KOG0056|consen 645 YAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC--- 721 (790)
T ss_pred HHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHh---
Confidence 999999999999999999999999964 699999999999999999999999999999999999999999999985
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc-CHHHHHHHHHHhh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAKLVKRQTE 374 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~ 374 (377)
.++|.|+|+|+++++-+||.|+++++|+|+|.|.|+|++.+ +|.|++||+.|+.
T Consensus 722 -a~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa 776 (790)
T KOG0056|consen 722 -ANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQQA 776 (790)
T ss_pred -cCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHHh
Confidence 57899999999999999999999999999999999999987 8899999976643
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-70 Score=563.67 Aligned_cols=361 Identities=28% Similarity=0.474 Sum_probs=318.7
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|++..+++.+...+..+..+.......++..+..++++++|++++ .|.+++|.++++..|...
T Consensus 210 ~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~ 288 (574)
T PRK11160 210 QAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAAL 288 (574)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHH
Confidence 5799999999999999999999998888887776666666666666666777888999885 789999999998877544
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 82 -LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
+..|+..+...+..++++..+++|+.++++.+++...+.... .....+.|+++||+|+|+++ ++++|+|+||++++|
T Consensus 289 ~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~-~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G 366 (574)
T PRK11160 289 AAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTST-AAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAG 366 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccC-CCCCCCeEEEEEEEEECCCC-CCcceecceEEECCC
Confidence 446778888888999999999999999999876532211111 11123469999999999753 246999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
|++||+||||||||||+++|+|+++|++|+|.+||+++.+++...+|++|+||||++++|++|++|||.++.+ +.++++
T Consensus 367 ~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~ 445 (574)
T PRK11160 367 EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP-NASDEA 445 (574)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCC-ccCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999854 567889
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
+.++++.+++++++++ |.|++|.+++ .+||||||||++||||++++|++||||||||+||+++++.+.+.|.++.
T Consensus 446 i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-- 522 (574)
T PRK11160 446 LIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-- 522 (574)
T ss_pred HHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--
Confidence 9999999999999999 9999999975 5899999999999999999999999999999999999999999999873
Q ss_pred CCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 017091 319 CKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 371 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 371 (377)
+++|+|+|||+++.+..||+|++|++|++++.|+|++++++++.|+++++.
T Consensus 523 --~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~~ 573 (574)
T PRK11160 523 --QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQR 573 (574)
T ss_pred --CCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHhh
Confidence 478999999999999899999999999999999999999999999999864
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-69 Score=562.04 Aligned_cols=360 Identities=30% Similarity=0.414 Sum_probs=312.1
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW-NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCE 80 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~ 80 (377)
+++||+||.++.+.++|.+..++..+...+..+..+.. .....++..+..+++++++++ +..|.+++|.+++++.|..
T Consensus 214 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~ 292 (592)
T PRK10790 214 MSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLG 292 (592)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHH
Confidence 57899999999999999998888777766555444332 222333333333333344444 6789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 81 WLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
.+..|+..+...+..+.++..+++|+.++++.++++... . ..+...+.|+++||+|+|+++ +++|+|+||++++|
T Consensus 293 ~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~--~~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~G 367 (592)
T PRK10790 293 RLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN-D--DRPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSR 367 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC-C--ccCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCC
Confidence 999999999999999999999999999999876542211 1 111122469999999999743 46999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
|++||+|+||||||||+|+|+|+++|++|+|.+||.++.+++.+.+|++|+||||+|.+|++|++|||.++. +.++++
T Consensus 368 e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~--~~~d~~ 445 (592)
T PRK10790 368 GFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--DISEEQ 445 (592)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC--CCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999984 467889
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
+.++++.++++++++++|.|++|.++. .+||||||||++|||||+++|+|||||||||+||+++++.+.+.|+++.
T Consensus 446 i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~-- 523 (592)
T PRK10790 446 VWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR-- 523 (592)
T ss_pred HHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--
Confidence 999999999999999999999999874 5899999999999999999999999999999999999999999999874
Q ss_pred CCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 319 CKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
+++|+|+|||+++.+..||+|++|++|++++.|+|++++++++.|++++..|.
T Consensus 524 --~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~~ 576 (592)
T PRK10790 524 --EHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQL 576 (592)
T ss_pred --CCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHHHHh
Confidence 36899999999999999999999999999999999999999999999998664
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-69 Score=560.10 Aligned_cols=364 Identities=35% Similarity=0.530 Sum_probs=322.5
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||.||.++.+.++|.+..++..+...+..+...........+..+..++++++|++++.+|.+|+|.+++++.+...
T Consensus 205 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~ 284 (588)
T PRK13657 205 VSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATL 284 (588)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence 47899999999999999999999888877666665555555555556677788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..+..+..+++|+.++++.+++..........+...+.|+++||+|+|+++ +++|+|+||+++|||
T Consensus 285 ~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~ 362 (588)
T PRK13657 285 LIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQ 362 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCC
Confidence 999999999999999999999999999988755422111111111122369999999999753 369999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
+++|+|+||||||||+|+|+|+++|++|+|.+||.++.+++...+|++|+||||+|.+|++|++|||.++. ++.+++++
T Consensus 363 ~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~-~~~~d~~i 441 (588)
T PRK13657 363 TVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR-PDATDEEM 441 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCC-CCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985 35678899
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
+.+++.+++++++.++|.|++|.+++ .+||||||||++|||||+++|+++|||||||+||+.+++.+.+.|.++.
T Consensus 442 ~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--- 518 (588)
T PRK13657 442 RAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--- 518 (588)
T ss_pred HHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh---
Confidence 99999999999999999999998874 5799999999999999999999999999999999999999999998873
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHH
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 372 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 372 (377)
+++|+|+||||++.++.||+|++|++|++++.|++++++..++.|++++..+
T Consensus 519 -~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 570 (588)
T PRK13657 519 -KGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRAQ 570 (588)
T ss_pred -cCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHHh
Confidence 4789999999999999999999999999999999999998888999988754
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-69 Score=559.17 Aligned_cols=364 Identities=38% Similarity=0.599 Sum_probs=327.7
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||.+|.++.+.++|.+..++..+...+..+..+....+...+..+..++++++|++++..|.+|+|.++++..+...
T Consensus 203 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~ 282 (571)
T TIGR02203 203 YRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIA 282 (571)
T ss_pred hHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHH
Confidence 57899999999999999999999888887777766666666666667777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..+.++..+.+|+.++++.+++..... ....+..+.|+++||+|+|++. ++++|+|+||++++||
T Consensus 283 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~ 359 (571)
T TIGR02203 283 LIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT--RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGE 359 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCC
Confidence 999999999999999999999999999998766532211 1111123469999999999754 3479999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
+++|+|+||||||||+++|+|+++|++|+|.+||.++++++..++|++|+|+||+|.+|++|++|||.++.+.+.+++++
T Consensus 360 ~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i 439 (571)
T TIGR02203 360 TVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEI 439 (571)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985436788999
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.+++++++.++|.|++|.+++ .+||||||||++||||++++|+++|||||||+||+.+++.+.+.|.++.
T Consensus 440 ~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--- 516 (571)
T TIGR02203 440 ERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--- 516 (571)
T ss_pred HHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh---
Confidence 99999999999999999999999974 5799999999999999999999999999999999999999999998874
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHH
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 372 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 372 (377)
+++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|++++..+
T Consensus 517 -~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~ 568 (571)
T TIGR02203 517 -QGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQ 568 (571)
T ss_pred -CCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHHHHh
Confidence 4789999999999998999999999999999999999998888899988765
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-68 Score=554.57 Aligned_cols=364 Identities=30% Similarity=0.480 Sum_probs=323.6
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|.+..++..+...+..+..+........+..+..++++++|++++..|.+|+|.++++..|...
T Consensus 186 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~ 265 (569)
T PRK10789 186 IRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGL 265 (569)
T ss_pred hHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence 68999999999999999999988888877766665555555555555666778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..+..+..+.+|+.++++.+++.... ....+...+.|+++|++|+|+.. ++++|+|+||++++|+
T Consensus 266 ~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~~~~~~I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~ 342 (569)
T PRK10789 266 MIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--SEPVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQ 342 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--CCCCCCCCCcEEEEEEEEECCCC-CCccccCeeEEECCCC
Confidence 99999999999999999999999999999876543211 11111223469999999999753 3479999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
+++|+||||||||||+++|+|+++|++|+|.+||+++...+...+|++++|+||+|.+|++|++|||.++.+ +.+++++
T Consensus 343 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~ 421 (569)
T PRK10789 343 MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP-DATQQEI 421 (569)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCC-CCCHHHH
Confidence 999999999999999999999999999999999999999998899999999999999999999999999843 5678889
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
+.+++.+++++++.++|.|++|.++. .+||||||||++||||++++|+++|||||||+||+.+++.+.+.|+++.
T Consensus 422 ~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--- 498 (569)
T PRK10789 422 EHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--- 498 (569)
T ss_pred HHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh---
Confidence 99999999999999999999999874 5799999999999999999999999999999999999999999998873
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
+++|+|+|||+++.++.||+|++|++|++++.|++++++++++.|++++..|.
T Consensus 499 -~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 551 (569)
T PRK10789 499 -EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQ 551 (569)
T ss_pred -CCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhh
Confidence 47899999999999989999999999999999999999999999999998653
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-68 Score=549.90 Aligned_cols=365 Identities=34% Similarity=0.508 Sum_probs=321.6
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.++.+.+++++..++..+...+..+..+........+..+..++++++|++++..|.+|+|.++++..|...
T Consensus 205 i~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~ 284 (585)
T TIGR01192 205 VSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANL 284 (585)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999988877776666555555555555556667788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..+..+..+++|+.++++.+++..........+...+.++++||+|+|+++ +++|+|+||++++||
T Consensus 285 l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~ 362 (585)
T TIGR01192 285 LIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQ 362 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCC
Confidence 999999999999999999999999999998765432111111111123469999999999753 368999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|+.++|+||++.+|++|++||+.++.+ +.+++++
T Consensus 363 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~ 441 (585)
T TIGR01192 363 TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE-GATDEEV 441 (585)
T ss_pred EEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCC-CCCHHHH
Confidence 999999999999999999999999999999999999999988899999999999999999999999999743 5678888
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
+++++.+++++++.++|.|++|.++. .+||||||||++|||||+++|++||||||||+||+.+++.+.+.|.++.
T Consensus 442 ~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--- 518 (585)
T TIGR01192 442 YEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--- 518 (585)
T ss_pred HHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh---
Confidence 89999999999999999999998874 5899999999999999999999999999999999999999999998873
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
+++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|++++..+.
T Consensus 519 -~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 571 (585)
T TIGR01192 519 -KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRRSG 571 (585)
T ss_pred -CCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHHhCc
Confidence 47899999999999988999999999999999999999999999999997653
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-68 Score=549.73 Aligned_cols=366 Identities=41% Similarity=0.649 Sum_probs=320.1
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+|+.++.+.++|.+..++..+...+..+...........+..+..++++++|++++..|.+|+|.++++..+...
T Consensus 207 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~ 286 (576)
T TIGR02204 207 IRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVM 286 (576)
T ss_pred cHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998888777766655554444444444444556677889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccc-cccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ-RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
+..|+..+...+..+..+..+.+|+.++++.+++..........+ +..+.|+++||+|+|++..++++|+|+||+++||
T Consensus 287 ~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~G 366 (576)
T TIGR02204 287 VAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPG 366 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCC
Confidence 999999999999999999999999999998765422111111111 1234699999999998532257999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
|+++|+||||||||||+|+|+|+++|++|+|.+||.++++++...+|++|+|+||+|++|++|++|||.++.+ +.++++
T Consensus 367 e~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~-~~~~~~ 445 (576)
T TIGR02204 367 ETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP-DATDEE 445 (576)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCC-CCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999853 456888
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
++++++.+++.++++++|.|++|.+++ .+||||||||++||||++++|+++|||||||+||+.+++.+.+.++++.
T Consensus 446 ~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-- 523 (576)
T TIGR02204 446 VEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-- 523 (576)
T ss_pred HHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh--
Confidence 999999999999999999999998874 5799999999999999999999999999999999999999999999874
Q ss_pred CCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHH
Q 017091 319 CKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 372 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 372 (377)
+++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|++++..|
T Consensus 524 --~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~~~ 575 (576)
T TIGR02204 524 --KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLARLQ 575 (576)
T ss_pred --CCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHhhc
Confidence 4789999999999998999999999999999999999999999999988765
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-68 Score=518.48 Aligned_cols=361 Identities=28% Similarity=0.416 Sum_probs=308.7
Q ss_pred hhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHH
Q 017091 3 RTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWL 82 (377)
Q Consensus 3 ~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~ 82 (377)
.+++.||+++.+.+.+......+.+.+.+..+...+.......+..+..+.++++.+..+-.|..+.-..+++++.+...
T Consensus 209 ~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~ 288 (573)
T COG4987 209 AELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAA 288 (573)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999888888877777666666555555544444233333444556767654444445544555
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 83 IYATWRMV-DNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 83 ~~~~~~~~-~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+.++..+. ..+.++.+...++.|+.++.+.+++...+.+.. +.....++++||+|+|++. ..++|+|+||++++||
T Consensus 289 ~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~--~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GE 365 (573)
T COG4987 289 LEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQT--ATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGE 365 (573)
T ss_pred HHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCcccc--CCccceeeeccceeecCCC-ccchhhccceeecCCC
Confidence 66666666 666788999999999999999988765441111 1111269999999999975 4579999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
.+||+|+||||||||+++|.|.++|++|+|.++|.++..++.+.+|+.|++++|.+++|++|++||+.++. ++.++|++
T Consensus 366 kvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~-~~AsDEel 444 (573)
T COG4987 366 KVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLAN-PDASDEEL 444 (573)
T ss_pred eEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcC-CCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985 47899999
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
++++++++++++++..|.|++|++++ ..||||||||++|||+|++|.+++||||||.|||+.+++++++.+.+..
T Consensus 445 ~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--- 521 (573)
T COG4987 445 WAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--- 521 (573)
T ss_pred HHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh---
Confidence 99999999999999999999999984 5899999999999999999999999999999999999999999998764
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 371 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 371 (377)
+|+|+|+|||++..++.||||++|++|+++++|+|++++.+++.|+++++.
T Consensus 522 -~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~q~ 572 (573)
T COG4987 522 -EGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQL 572 (573)
T ss_pred -cCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHhcc
Confidence 589999999999999999999999999999999999999999999998763
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=538.25 Aligned_cols=351 Identities=30% Similarity=0.435 Sum_probs=311.1
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|++..++..+...+..+..+........+..+..++++++|++++..|.+|+|.++++..+...
T Consensus 190 ~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~ 269 (544)
T TIGR01842 190 AEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGR 269 (544)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999998888777666665555555555555666778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..++.+..+.+|+.++++.+++.... ...+...+.++++||+|+|+++ ++++|+|+||++++||
T Consensus 270 ~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~ 345 (544)
T TIGR01842 270 ALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGE 345 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCC
Confidence 99999999999999999999999999999876553211 1111223469999999999753 2479999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
+++|+||||||||||+++|+|+++|++|+|.+||.++..++...+|+.++|+||+|.+|++|++||+.++. ++.+++++
T Consensus 346 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~ 424 (544)
T TIGR01842 346 ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFG-ENADPEKI 424 (544)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccC-CCCCHHHH
Confidence 99999999999999999999999999999999999999998888999999999999999999999998763 34678889
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.++++++++++|.|++|.+++ .+||||||||++||||++++|++||||||||+||+.+++.+.+.|.++..
T Consensus 425 ~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-- 502 (544)
T TIGR01842 425 IEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-- 502 (544)
T ss_pred HHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh--
Confidence 99999999999999999999998874 68999999999999999999999999999999999999999999988742
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
+++|+|+|||+++.+..||+|++|++|++++.|+++++++
T Consensus 503 -~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 503 -RGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred -CCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 4789999999999888899999999999999999998864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=535.94 Aligned_cols=323 Identities=29% Similarity=0.394 Sum_probs=286.8
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|++..++..+...+..+..+........+..+..++++++|++++..|.+|+|.++++..+...
T Consensus 203 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~ 282 (529)
T TIGR02868 203 AADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLA 282 (529)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHH
Confidence 58999999999999999999999888887777766666655566666677778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc--ccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE--GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEA 159 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~ 159 (377)
+..|+..+...+..++.+..+.+|+.++++.+++...... ....++..+.|+++||+|+|+++ +++|+|+||++++
T Consensus 283 ~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~ 360 (529)
T TIGR02868 283 AFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPP 360 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcC
Confidence 9999999999999999999999999999987765321111 11111123469999999999753 3699999999999
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHH
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 239 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~ 239 (377)
||++||+||||||||||+|+|+|+++|++|+|.+||+|+.++ ..++|++|+||||+|++|++|++|||.++. ++.+++
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~-~~~~~e 438 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGR-PDATDE 438 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccC-CCCCHH
Confidence 999999999999999999999999999999999999999999 999999999999999999999999999985 467889
Q ss_pred HHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc
Q 017091 240 DIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 317 (377)
Q Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~ 317 (377)
+++++++.+++++++.++|+|++|.+++ .+||||||||++||||++++|+|||||||||+||+++++.+.+.+.++.
T Consensus 439 ~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~- 517 (529)
T TIGR02868 439 ELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL- 517 (529)
T ss_pred HHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-
Confidence 9999999999999999999999999984 5799999999999999999999999999999999999999999998773
Q ss_pred cCCCCeEEEEEecCc
Q 017091 318 DCKTKRTVIVIAHRL 332 (377)
Q Consensus 318 ~~~~g~tvi~itH~l 332 (377)
+++|+|+|||++
T Consensus 518 ---~~~TvIiItHrl 529 (529)
T TIGR02868 518 ---SGKTVVVITHHL 529 (529)
T ss_pred ---CCCEEEEEecCC
Confidence 578999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-67 Score=503.36 Aligned_cols=362 Identities=39% Similarity=0.574 Sum_probs=331.0
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
.++||.||.|+++..+|....+.+.+...+......+++.....++.....++.+.++..+..|++|+|+++....+..+
T Consensus 132 fEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~q 211 (497)
T COG5265 132 FETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQ 211 (497)
T ss_pred hhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhh
Confidence 47999999999999999999999988888777666777666667777777788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccc-cccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ-RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
+..|..-++..+.++.+++...++++++++.+.+..+.+...+.+ -..+.+.++||+|.|... +++|+++||++++|
T Consensus 212 ls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g 289 (497)
T COG5265 212 LSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLG 289 (497)
T ss_pred hhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeecccc--chhhcCccccccCc
Confidence 999999999999999999999999999999887654433323333 233569999999999753 68999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
+.+|++||||+||||++++|.++|++++|.|.+||+|++......+|+.||.||||..||+.|+..|+.||. +..++++
T Consensus 290 ~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr-~~at~ee 368 (497)
T COG5265 290 KTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGR-PDATAEE 368 (497)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccC-ccccHHH
Confidence 999999999999999999999999999999999999999998899999999999999999999999999995 4788999
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCCC--CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
+..+++.+.+.+++..+|.||+|.+++. .|||||||||+|||+++++|+||+|||+||+||..+++.++..|+++.
T Consensus 369 v~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-- 446 (497)
T COG5265 369 VGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-- 446 (497)
T ss_pred HHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--
Confidence 9999999999999999999999999963 699999999999999999999999999999999999999999999985
Q ss_pred CCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 017091 319 CKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 370 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 370 (377)
.|+|.++|.|+++++..||.|+||++|+|+|.|+|++++..++.|++||.
T Consensus 447 --~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 447 --AGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496 (497)
T ss_pred --CCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHhc
Confidence 58999999999999999999999999999999999999999999999985
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-65 Score=576.10 Aligned_cols=360 Identities=25% Similarity=0.381 Sum_probs=307.2
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcCHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIM-IGQVSPEQLTKYVLYCE 80 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~-~g~lt~g~l~~~~~~~~ 80 (377)
+++||+||.++++.+++.+..+...+..........++......+ ..+++++++++.+. .|.+++|.+.+++.|..
T Consensus 1154 i~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~ 1230 (1522)
T TIGR00957 1154 VSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECV---GNCIVLFAALFAVISRHSLSAGLVGLSVSYSL 1230 (1522)
T ss_pred cHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 579999999999888888777766555433332222332222222 22334445555554 57899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc-cc--cccccccEEEEEEEEEcCCCCCCCceeeeeEEE
Q 017091 81 WLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEG-VK--LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTI 157 (377)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~-~~--~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i 157 (377)
.+..|+..+...+..+..+..+++|+.++++.+++......+ .. .++..+.|+++||+|+|+.+ ..++|+|+||+|
T Consensus 1231 ~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I 1309 (1522)
T TIGR00957 1231 QVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTI 1309 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEE
Confidence 999999999999999999999999999999887664311111 11 11234579999999999754 246999999999
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK 237 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 237 (377)
++||++||||+||||||||+++|.|+++|++|+|.+||+|+++++..++|++|++|||+|.+|++||+|||... ...+
T Consensus 1310 ~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~--~~~s 1387 (1522)
T TIGR00957 1310 HGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF--SQYS 1387 (1522)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc--cCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999832 1467
Q ss_pred HHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHh
Q 017091 238 NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 315 (377)
Q Consensus 238 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l 315 (377)
+++++++++.+++++++.++|.|++|.+++ .+||||||||+||||||+++|+|||||||||+||+++++.+++.|++.
T Consensus 1388 deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~ 1467 (1522)
T TIGR00957 1388 DEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQ 1467 (1522)
T ss_pred HHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 899999999999999999999999999975 689999999999999999999999999999999999999999999876
Q ss_pred hccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 017091 316 RNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 371 (377)
Q Consensus 316 ~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 371 (377)
. +++|+|+|+|+++++..||||+||++|+|+|.|+|++++++++.|++++++
T Consensus 1468 ~----~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1468 F----EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred c----CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHH
Confidence 3 478999999999999999999999999999999999999988999999876
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-65 Score=523.73 Aligned_cols=335 Identities=31% Similarity=0.465 Sum_probs=291.3
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+|+.|+.+.++|++..++..+...+..+...........+..+..+++++++++.+..|.+|+|.++++.+|...
T Consensus 193 ~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~ 272 (529)
T TIGR02857 193 LPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPE 272 (529)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999988888776665555444444444444555555566777778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..++.+..+++|+.++++.+++.... .... ....+.|+++||+|+|+++ .+++|+|+||+|++||
T Consensus 273 ~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~-~~~~-~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~ 349 (529)
T TIGR02857 273 FYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK-APVT-AAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGE 349 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-cCCC-CCCCCeEEEEEEEEECCCC-CcccccceeEEECCCC
Confidence 99999999999999999999999999999865432211 1111 1112369999999999864 2479999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
+++|+||||||||||+|+|+|+++|++|+|.+||.++.+++..++|++|+||+|+|.+|++|++||+.++.+ +.+++++
T Consensus 350 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~i 428 (529)
T TIGR02857 350 RVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARP-DASDAEI 428 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999753 5678889
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.++++++++++|.|++|.+++ .+||||||||++||||++++|+++|||||||+||+++++.+.+.+.++.
T Consensus 429 ~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--- 505 (529)
T TIGR02857 429 RRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--- 505 (529)
T ss_pred HHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc---
Confidence 99999999999999999999999874 5899999999999999999999999999999999999999999999873
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEE
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVI 344 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l 344 (377)
+++|+|+|||+++.++.||+|++|
T Consensus 506 -~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 506 -QGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred -CCCEEEEEecCHHHHHhCCEEEeC
Confidence 478999999999999899999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-64 Score=564.97 Aligned_cols=368 Identities=34% Similarity=0.561 Sum_probs=316.3
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CcCHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIG--------QVSPEQLT 73 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g--------~lt~g~l~ 73 (377)
+++||+|+.|+.+.++|.+......+...+.....++..+...++..+..++++|+|++++..| .+++|.++
T Consensus 246 i~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~ 325 (1466)
T PTZ00265 246 IRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVI 325 (1466)
T ss_pred hHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHH
Confidence 6899999999999999999988888887777777666666666666677788999999999885 58899988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeee
Q 017091 74 KYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHV 153 (377)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~i 153 (377)
+++.+.......+..+...+..++.+..+++|++++++.+++......+...+. ...|+++||+|+|+++++.++|+|+
T Consensus 326 ~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~i 404 (1466)
T PTZ00265 326 SILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDL 404 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCC-CCcEEEEEEEEEcCCCCCCceeccc
Confidence 877666555555667777888999999999999999998775322111111121 2369999999999864334799999
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE-CCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCC
Q 017091 154 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 232 (377)
Q Consensus 154 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i-~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~ 232 (377)
||+|++||++||+||||||||||+++|+|+++|++|+|++ ||.++..++..++|++||||+|+|.+|+.||+|||.++.
T Consensus 405 sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~ 484 (1466)
T PTZ00265 405 NFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSL 484 (1466)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcC
Confidence 9999999999999999999999999999999999999999 579998888888999999999999999999999999863
Q ss_pred CC--------------------------------------------------------CCCHHHHHHHHHHcCHHHHHHh
Q 017091 233 PK--------------------------------------------------------DVKNEDIEWAAKQAYVHEFILS 256 (377)
Q Consensus 233 ~~--------------------------------------------------------~~~~~~~~~~~~~~~l~~~~~~ 256 (377)
.. ..+++++.++++.+++++++..
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~ 564 (1466)
T PTZ00265 485 YSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSA 564 (1466)
T ss_pred CCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHh
Confidence 10 2345678889999999999999
Q ss_pred CCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh
Q 017091 257 LPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 334 (377)
Q Consensus 257 ~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~ 334 (377)
+|.|++|.++. .+|||||||||+|||||+++|+|||||||||+||+.++..+.+.|+++.+. +|+|+|+|||+++.
T Consensus 565 lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~--~g~TvIiIsHrls~ 642 (1466)
T PTZ00265 565 LPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGN--ENRITIIIAHRLST 642 (1466)
T ss_pred CccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhc--CCCEEEEEeCCHHH
Confidence 99999999874 689999999999999999999999999999999999999999999998532 47899999999999
Q ss_pred HHhcCeEEEEeCC-----------------------------------------------EEEEEcChHHHhh-cCHHHH
Q 017091 335 IKAVDRIVVIDDG-----------------------------------------------RIIEVGNHAELLH-KGRLYA 366 (377)
Q Consensus 335 ~~~~d~v~~l~~G-----------------------------------------------~i~~~g~~~~l~~-~~~~~~ 366 (377)
++.||+|++|++| +|+|+|+|+++++ .++.|+
T Consensus 643 i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~ 722 (1466)
T PTZ00265 643 IRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYY 722 (1466)
T ss_pred HHhCCEEEEEeCCccccccccccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHH
Confidence 9889999999986 5999999999998 689999
Q ss_pred HHHHHH
Q 017091 367 KLVKRQ 372 (377)
Q Consensus 367 ~~~~~~ 372 (377)
.++..|
T Consensus 723 ~l~~~q 728 (1466)
T PTZ00265 723 TMINNQ 728 (1466)
T ss_pred HHHhhh
Confidence 998765
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-64 Score=565.08 Aligned_cols=365 Identities=22% Similarity=0.313 Sum_probs=305.8
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcCHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSI--MIGQVSPEQLTKYVLYC 79 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v--~~g~lt~g~l~~~~~~~ 79 (377)
+++||+||.++++.+++.+..+...+..........++.....++..+..+++++++++.+ ..+.+++|.+.+++.|.
T Consensus 1147 ~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a 1226 (1560)
T PTZ00243 1147 SATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMA 1226 (1560)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 5799999999999999988888777665544333333333334444343334444444433 34557899888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc--------------------------c-ccc---cccccc
Q 017091 80 EWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL--------------------------S-EGV---KLQRLM 129 (377)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~--------------------------~-~~~---~~~~~~ 129 (377)
..+..|+..+...+..+..++.+++|+.++++.++++..+ . ... +.++..
T Consensus 1227 ~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1306 (1560)
T PTZ00243 1227 MQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQA 1306 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCC
Confidence 9999999999999999999999999999999754321100 0 000 001123
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
+.|+++||+|+|+++ .+++|+||||+|++||++||||+||||||||+++|+|+++|++|+|++||+|+.+++.+++|++
T Consensus 1307 G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~ 1385 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQ 1385 (1560)
T ss_pred CeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhc
Confidence 469999999999754 2469999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCC
Q 017091 210 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 210 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~ 287 (377)
|+||||+|.||++||+|||... ...++++++++++.+++++++..+|.|++|.+++ .+||||||||++|||||+++
T Consensus 1386 I~iVpQdp~LF~gTIreNIdp~--~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1386 FSMIPQDPVLFDGTVRQNVDPF--LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred ceEECCCCccccccHHHHhCcc--cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999864 2567899999999999999999999999999974 68999999999999999995
Q ss_pred -CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc-CHHH
Q 017091 288 -PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLY 365 (377)
Q Consensus 288 -p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~ 365 (377)
|+|||||||||+||+++++.+++.|++.. +++|+|+|+|+++++..||+|++|++|+|++.|+|++++++ ++.|
T Consensus 1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~----~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f 1539 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPALDRQIQATVMSAF----SAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIF 1539 (1560)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHC----CCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHH
Confidence 89999999999999999999999998863 47899999999999999999999999999999999999975 7889
Q ss_pred HHHHHHHh
Q 017091 366 AKLVKRQT 373 (377)
Q Consensus 366 ~~~~~~~~ 373 (377)
+++++.+.
T Consensus 1540 ~~l~~~~~ 1547 (1560)
T PTZ00243 1540 HSMVEALG 1547 (1560)
T ss_pred HHHHHHhC
Confidence 99987643
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-64 Score=491.43 Aligned_cols=352 Identities=30% Similarity=0.446 Sum_probs=320.2
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
.++|++.|......++|.+.+..+...+.+..-..+.+...+-.+-.+.+..++.+|+|+|+.|++|+|.+++-..+.+.
T Consensus 208 AEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gR 287 (580)
T COG4618 208 AEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGR 287 (580)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhh
Confidence 37899999999999999999888887776666566666666677778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
...|+-..+..|..+..++.+++|+.+++...|.... ..+.|.+.+.+.++++++.=|+. .+++|+++||++.+||
T Consensus 288 aLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~---~m~LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~ 363 (580)
T COG4618 288 ALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE---RMPLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGE 363 (580)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC---CCCCCCCCceeeEeeeeecCCCC-CCcceecceeEecCCc
Confidence 9999999999999999999999999999988776432 23345566789999999977765 4789999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
.+|||||||||||||.|+|.|..+|.+|.|++||-++.+++.+++-++|||+||+..||++||.|||+-. ..+.+.+.+
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf-~~~~d~~kI 442 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARF-GEEADPEKV 442 (580)
T ss_pred eEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhc-cccCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999743 235678889
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.++.+|.+-++|+||+|.+++ ..||||||||++|||||+.+|.+++||||-|+||...+..+.+.|.++++
T Consensus 443 ieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-- 520 (580)
T COG4618 443 IEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-- 520 (580)
T ss_pred HHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH--
Confidence 99999999999999999999999985 58999999999999999999999999999999999999999999999975
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+|.|+|+|||+++.+..+|+|++|++|++...|+.+|++.+
T Consensus 521 -rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 521 -RGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred -cCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 58999999999999999999999999999999999998764
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=561.74 Aligned_cols=362 Identities=24% Similarity=0.365 Sum_probs=291.0
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc----C-HHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMI-GQV----S-PEQLTKY 75 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~-g~l----t-~g~l~~~ 75 (377)
+++||+||.++++.+++.+..+...+....... ...+.... +..+..+++++.+++.+.. +.+ . .+.+..+
T Consensus 1099 ~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~wl~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~ 1175 (1495)
T PLN03232 1099 LSSIRAYKAYDRMAKINGKSMDNNIRFTLANTS-SNRWLTIR--LETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLL 1175 (1495)
T ss_pred hHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHccccccccccchHHHHHH
Confidence 579999999887766665554433332221111 11111111 1111222233334444442 332 1 2233345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc-ccccc--cccccccEEEEEEEEEcCCCCCCCceee
Q 017091 76 VLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL-SEGVK--LQRLMGHVQFVNISFHYPSRPTVPILNH 152 (377)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~--~~~~~~~i~~~~v~~~y~~~~~~~vL~~ 152 (377)
+.|...+..|+..+...+..+..+..+++|+.++++.++|.... ....+ .++..+.|+++||+|+|+.+ .+++|+|
T Consensus 1176 ~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~ 1254 (1495)
T PLN03232 1176 LSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHG 1254 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCccccc
Confidence 66777888899999999999999999999999999987764321 11111 11234579999999999643 2479999
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCC
Q 017091 153 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 232 (377)
Q Consensus 153 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~ 232 (377)
+||+|++||++|||||||||||||+++|.|+++|++|+|.+||+|+++++..++|++|+||||+|.+|++|++|||.++.
T Consensus 1255 isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~ 1334 (1495)
T PLN03232 1255 LSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS 1334 (1495)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHH
Q 017091 233 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 310 (377)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~ 310 (377)
..++++++++++.++++++++.+|.|++|.+++ .+||||||||++|||||+++|+|||||||||+||+++++.+++
T Consensus 1335 --~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~ 1412 (1495)
T PLN03232 1335 --EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQR 1412 (1495)
T ss_pred --CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 567899999999999999999999999999974 5899999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcC-HHHHHHHHHHh
Q 017091 311 VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG-RLYAKLVKRQT 373 (377)
Q Consensus 311 ~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~-~~~~~~~~~~~ 373 (377)
.|++.. +++|+|+|||+++++..||+|++|++|+|+|.|+|+++++++ +.|+++++.+.
T Consensus 1413 ~L~~~~----~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1413 TIREEF----KSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred HHHHHc----CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 998873 478999999999999999999999999999999999999886 48999987643
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=561.01 Aligned_cols=357 Identities=26% Similarity=0.373 Sum_probs=284.7
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCC---------cCHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY-RSTQVMAVLLGGMSIMIGQ---------VSPEQ 71 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~v~~g~---------lt~g~ 71 (377)
+++||+|+.++++.+.+.+..+...+. .........+..... .+..+++++.+.+.+..+. .++|.
T Consensus 1102 i~tIraf~~~~~f~~~~~~~~~~~~~~----~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~ 1177 (1622)
T PLN03130 1102 LSTIRAYKAYDRMAEINGRSMDNNIRF----TLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGL 1177 (1622)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHH
Confidence 579999999887666555444433222 111111111111111 1122223333344454332 23444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc-c--cccccccccEEEEEEEEEcCCCCCCC
Q 017091 72 LTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE-G--VKLQRLMGHVQFVNISFHYPSRPTVP 148 (377)
Q Consensus 72 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~-~--~~~~~~~~~i~~~~v~~~y~~~~~~~ 148 (377)
+ +.|...+..++..+...+..+..+..+++|+.++++.|+|.....+ . ...++..+.|+++||+|+|+++ .++
T Consensus 1178 ~---ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~ 1253 (1622)
T PLN03130 1178 L---LSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPP 1253 (1622)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCc
Confidence 3 3455556666667777777889999999999999998776432111 1 1111234579999999999643 247
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 228 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni 228 (377)
+|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|+++++..++|++|++|||+|.+|++||+|||
T Consensus 1254 VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNL 1333 (1622)
T PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNL 1333 (1622)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHH
Q 017091 229 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306 (377)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~ 306 (377)
.++. ..++++++++++.++++++++.+|.|++|.+++ .+||||||||+||||||+++|+|||||||||+||+++++
T Consensus 1334 d~~~--~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~ 1411 (1622)
T PLN03130 1334 DPFN--EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDA 1411 (1622)
T ss_pred CcCC--CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHH
Confidence 9863 457899999999999999999999999999985 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc-CHHHHHHHHHH
Q 017091 307 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAKLVKRQ 372 (377)
Q Consensus 307 ~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 372 (377)
.|++.|++.. +++|+|+|+|+++++..||||+||++|+|+|.|+|++++++ ++.|++++...
T Consensus 1412 ~Iq~~I~~~~----~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1412 LIQKTIREEF----KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred HHHHHHHHHC----CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHc
Confidence 9999999873 47899999999999999999999999999999999999987 58899988764
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-61 Score=538.32 Aligned_cols=361 Identities=21% Similarity=0.303 Sum_probs=293.0
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+.+||+||.++.+.+++.+..+..............++......+..+..+++++ ..+....++.|.+..++.|...
T Consensus 1074 l~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~---l~~~~~~~~~g~~g~~l~~~~~ 1150 (1490)
T TIGR01271 1074 LWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTF---IAIGTNQDGEGEVGIILTLAMN 1150 (1490)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCCccHHHHHHHHHHH
Confidence 4789999999999999988887554433222222222222222222111111111 1111223455666556667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc-----------------cccccccccEEEEEEEEEcCCC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEG-----------------VKLQRLMGHVQFVNISFHYPSR 144 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~-----------------~~~~~~~~~i~~~~v~~~y~~~ 144 (377)
+..++..+...+..+..+..+++|+.++++.+++...+... ...++..+.|+++||+|+|+..
T Consensus 1151 l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~ 1230 (1490)
T TIGR01271 1151 ILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA 1230 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC
Confidence 88888888889999999999999999999887663311100 0011234579999999999753
Q ss_pred CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccH
Q 017091 145 PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI 224 (377)
Q Consensus 145 ~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv 224 (377)
.+++|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|++||.|+..++...+|++|+||||+|.+|++||
T Consensus 1231 -~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTI 1308 (1490)
T TIGR01271 1231 -GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTF 1308 (1490)
T ss_pred -CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCH
Confidence 3579999999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCH
Q 017091 225 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302 (377)
Q Consensus 225 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~ 302 (377)
++||... ...++++++++++.+++.+++..+|.|++|.+++ .+||||||||+||||||+++|+|||||||||+||+
T Consensus 1309 R~NLdp~--~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~ 1386 (1490)
T TIGR01271 1309 RKNLDPY--EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDP 1386 (1490)
T ss_pred HHHhCcc--cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCH
Confidence 9999754 2457899999999999999999999999999985 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 303 ~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
.+++.+++.|++.. +++|||+|||+++.+..||+|++|++|+|++.|+|++++++++.|+++++.+.
T Consensus 1387 ~Te~~I~~~L~~~~----~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1387 VTLQIIRKTLKQSF----SNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred HHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 99999999999873 47899999999999999999999999999999999999988889999987643
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=434.06 Aligned_cols=217 Identities=35% Similarity=0.529 Sum_probs=193.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC-CHHHHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~-~~~~~r~~ 209 (377)
+|+++||+|+|++. .+|+|||++|++||+++|+||||||||||||||+||.+|++|+|.++|.++... +...+|++
T Consensus 2 mi~i~~l~K~fg~~---~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGDK---EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCCe---EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 48999999999854 699999999999999999999999999999999999999999999999877432 56778999
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
+|+|||+.+|| ..||.||+.++.. ...+ .+...+.++++++.+..+.+| .+|||||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP---------~qLSGGQqQRVAIAR 149 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP---------AQLSGGQQQRVAIAR 149 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc---------cccCcHHHHHHHHHH
Confidence 99999999999 6899999988631 1112 223345677788888888777 779999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|+++|+|||||+|||+...++++.++++.+ .|.|.|+|||++.+++. ||||++|++|+|++.|+|++++.+
T Consensus 150 ALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~---eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 150 ALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE---EGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred HHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH---cCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999999975 48999999999999987 999999999999999999999987
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 227 p 227 (240)
T COG1126 227 P 227 (240)
T ss_pred C
Confidence 4
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-60 Score=491.12 Aligned_cols=339 Identities=19% Similarity=0.239 Sum_probs=275.0
Q ss_pred chhhhhhCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEE--KELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYC 79 (377)
Q Consensus 2 ~~~vk~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~ 79 (377)
++++|+|+.++ .+.+++.+..++..+...+..+...........+..+...+.+++|++. |.+|+|.+++|++|.
T Consensus 201 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~ 277 (555)
T TIGR01194 201 AKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLAL 277 (555)
T ss_pred HHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHH
Confidence 57899999854 5577888888777776655443333332322333223333334444433 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cc--ccccc----ccccccccEEEEEEEEEcCCCC--CCCc
Q 017091 80 EWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSN--QF--LSEGV----KLQRLMGHVQFVNISFHYPSRP--TVPI 149 (377)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~--~~--~~~~~----~~~~~~~~i~~~~v~~~y~~~~--~~~v 149 (377)
..+..|+..++..+..++.+..+++|+.++++.++++ .. +.... ......+.|+++||+|+|++.+ .+++
T Consensus 278 ~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~ 357 (555)
T TIGR01194 278 LYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFA 357 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCce
Confidence 9999999999999999999999999999998642211 10 00000 0011124699999999997531 1369
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHh
Q 017091 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 229 (377)
Q Consensus 150 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~ 229 (377)
|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++..++|++++||+|++.+|+.|+++|..
T Consensus 358 l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~ 437 (555)
T TIGR01194 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEG 437 (555)
T ss_pred eccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999952
Q ss_pred cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHH
Q 017091 230 YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309 (377)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~ 309 (377)
++.+++++.++++.++++++++.+|.|++|. .+||||||||++||||++++|+++|||||||+||+++++.+.
T Consensus 438 ----~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~---~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~ 510 (555)
T TIGR01194 438 ----EHASLDNAQQYLQRLEIADKVKIEDGGFSTT---TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFY 510 (555)
T ss_pred ----cchhHHHHHHHHHHcCCchhhcccccccCCc---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence 3456778889999999999999999999985 679999999999999999999999999999999999999998
Q ss_pred HHHH-HhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEc
Q 017091 310 GVLH-ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 310 ~~l~-~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g 353 (377)
+.+. .++. +++|+|+|||+++.+..||+|++|++|++++.-
T Consensus 511 ~~l~~~~~~---~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~~ 552 (555)
T TIGR01194 511 EELLPDLKR---QGKTIIIISHDDQYFELADQIIKLAAGCIVKDT 552 (555)
T ss_pred HHHHHHHHh---CCCEEEEEeccHHHHHhCCEEEEEECCEEEEec
Confidence 8654 4432 478999999999998889999999999998754
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-59 Score=524.77 Aligned_cols=349 Identities=22% Similarity=0.298 Sum_probs=290.6
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+|+.|+.+.+++++..++..+...+.............. ....+.++++|++++..|.+|+|.+++++.++..
T Consensus 489 i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~ 566 (1495)
T PLN03232 489 MDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNS--IPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAV 566 (1495)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999887766555544443332222111111 1122334678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..+.++..+++|+.++++.+++..... .........|+++|++|+|+...++++|+|+||+|++||
T Consensus 567 l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~--~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge 644 (1495)
T PLN03232 567 LRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN--PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGS 644 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc--CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCC
Confidence 999999999999999999999999999998765422111 101112235999999999975333579999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
+++|+||||||||||+++|+|+++|++|.+. .+|.+|+||+|+|++|++||+|||.+|.+ .+++++
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~--~~~e~~ 710 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGSVAYVPQVSWIFNATVRENILFGSD--FESERY 710 (1495)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCcEEEEcCccccccccHHHHhhcCCc--cCHHHH
Confidence 9999999999999999999999999999763 24678999999999999999999999853 567889
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHH-HHHhhcc
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV-LHALRND 318 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~-l~~l~~~ 318 (377)
.++++.+++.++++.+|.|++|.+++ .+|||||||||+||||++++|+|+|||||||+||+++++.+.+. +...
T Consensus 711 ~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~--- 787 (1495)
T PLN03232 711 WRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE--- 787 (1495)
T ss_pred HHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh---
Confidence 99999999999999999999999985 58999999999999999999999999999999999999988654 5443
Q ss_pred CCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHH
Q 017091 319 CKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 372 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 372 (377)
.+++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|.+++..+
T Consensus 788 -l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~ 840 (1495)
T PLN03232 788 -LKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENA 840 (1495)
T ss_pred -hcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhc
Confidence 24789999999999999999999999999999999999998888888887643
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-58 Score=519.37 Aligned_cols=345 Identities=22% Similarity=0.351 Sum_probs=287.6
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRS--TQVMAVLLGGMSIMIGQVSPEQLTKYVLYC 79 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~ 79 (377)
+++||+|+.|+.+.+++++..++..+...+.... ..+..++... ..+.++++|++.+..|.+|+|.+++++.++
T Consensus 489 i~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~ 564 (1622)
T PLN03130 489 MDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLL----SAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLF 564 (1622)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 6899999999999988887666544433332222 2222222111 234566788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeC
Q 017091 80 EWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEA 159 (377)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~ 159 (377)
..+..|+..+...+..+.++..+++|+.++++.++....+.. . .......|+++|++|+|+..+++++|+|+||+|++
T Consensus 565 ~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~-~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~ 642 (1622)
T PLN03130 565 AVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNP-P-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPV 642 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCC-c-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecC
Confidence 999999999999999999999999999999976543211111 0 01112359999999999753335799999999999
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCCC-CeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCH
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN 238 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~-G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~ 238 (377)
||+++|+||||||||||+++|+|+++|++ |+|.+ |.+|+||+|+|++|++||+|||.||.+ .++
T Consensus 643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~~Iayv~Q~p~LfngTIreNI~fg~~--~d~ 707 (1622)
T PLN03130 643 GSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAYVPQVSWIFNATVRDNILFGSP--FDP 707 (1622)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cCeEEEEcCccccCCCCHHHHHhCCCc--ccH
Confidence 99999999999999999999999999999 89974 457999999999999999999999854 467
Q ss_pred HHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHH-HHHHh
Q 017091 239 EDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG-VLHAL 315 (377)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~-~l~~l 315 (377)
+++.++++.+++.++++.+|.|++|.+++ .+|||||||||+||||++++|+|+|||||||+||+++++.+.+ .+...
T Consensus 708 e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~ 787 (1622)
T PLN03130 708 ERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDE 787 (1622)
T ss_pred HHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHH
Confidence 88999999999999999999999999985 5899999999999999999999999999999999999988764 55544
Q ss_pred hccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 017091 316 RNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 371 (377)
Q Consensus 316 ~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 371 (377)
. +++|+|+|||+++.+..||+|++|++|++++.|++++++++.+.|.+++..
T Consensus 788 l----~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~ 839 (1622)
T PLN03130 788 L----RGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMEN 839 (1622)
T ss_pred h----cCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHh
Confidence 2 478999999999999999999999999999999999999888888888764
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-60 Score=435.95 Aligned_cols=221 Identities=35% Similarity=0.540 Sum_probs=197.8
Q ss_pred cEEEEEEEEEcCCC--CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH---HH
Q 017091 131 HVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~--~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~ 205 (377)
+|++++|+|.|+.+ ...++|+||||+|++||++||+|+||||||||+|++.+|.+|++|+|.+||+++..++. +.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 48999999999752 12469999999999999999999999999999999999999999999999999887764 45
Q ss_pred HhcceEEEccCCcCc-cccHHHHHhcCCCC-----CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 206 LREKIGFVGQEPQLL-QMDIKSNIMYGCPK-----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 206 ~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
.|++||++||+++|+ +.||++|++|+..- .....++.+.++.+++.++.+.+| .+|||||||||+
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP---------~qLSGGQKQRVa 151 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP---------AQLSGGQKQRVA 151 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc---------hhcCcchhhHHH
Confidence 678999999999999 58999999986431 112345666788888888888877 789999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHH
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l 358 (377)
|||||+.+|+|||.|||||+|||++.+.|+++|++++++ .|.||++|||.|+.++. ||||.||++|+++|.|+..++
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~--lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRE--LGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHH--cCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 999999999999999999999999999999999999875 59999999999999987 999999999999999999999
Q ss_pred hhcC
Q 017091 359 LHKG 362 (377)
Q Consensus 359 ~~~~ 362 (377)
+.++
T Consensus 230 F~~P 233 (339)
T COG1135 230 FANP 233 (339)
T ss_pred hcCc
Confidence 8764
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=493.82 Aligned_cols=360 Identities=27% Similarity=0.429 Sum_probs=298.6
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcCHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIM--IGQVSPEQLTKYVLYC 79 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~--~g~lt~g~l~~~~~~~ 79 (377)
+.|||+|+.++++.+++....+...+...-......++..-...+.++. ++..+...+. .+.+++|..-..+.|.
T Consensus 1007 lsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~---v~~~al~~vl~~~~~~~~g~vGLslsya 1083 (1381)
T KOG0054|consen 1007 LSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLV---VLIAALFAVLLPSGLISPGLVGLSLSYA 1083 (1381)
T ss_pred cceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHccCCCCCcchHHHHHHHH
Confidence 3589999999999999988777655543322222222222222222221 1222222222 2226788888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc--cc-ccccccccccEEEEEEEEEcCCCCCCCceeeeeEE
Q 017091 80 EWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL--SE-GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLT 156 (377)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~--~~-~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~ 156 (377)
..+...++.+.....++...+.+++|+.++.+.|+|.... .. +.+.+|..|.|+++|++.+|..+ ...||+||||+
T Consensus 1084 l~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~ 1162 (1381)
T KOG0054|consen 1084 LQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFT 1162 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEE
Confidence 9999999999999999999999999999999987772211 11 12224567789999999999754 35899999999
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 236 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 236 (377)
|+|||++||||+.|||||||+++|.++.+|.+|+|.|||.|+.++...++|++++.+||||.||++|+|.|+.-. ...
T Consensus 1163 I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf--~e~ 1240 (1381)
T KOG0054|consen 1163 IKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF--DEY 1240 (1381)
T ss_pred EcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc--ccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999742 246
Q ss_pred CHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHH
Q 017091 237 KNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 314 (377)
Q Consensus 237 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~ 314 (377)
++++++++++++++.+++.++|.++++.+. +.++|-||||.+||||||+++++||+|||+|+++|+++...|++.|++
T Consensus 1241 sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1241 SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHH
Confidence 789999999999999999999999999886 469999999999999999999999999999999999999999999997
Q ss_pred hhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc-CHHHHHHHHH
Q 017091 315 LRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAKLVKR 371 (377)
Q Consensus 315 l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 371 (377)
-. +++|||.|+||++++.+||||+||++|+++|.|+|++|+++ +..|.++..+
T Consensus 1321 ~F----~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1321 EF----KDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred Hh----cCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHH
Confidence 64 47899999999999999999999999999999999999977 5556555544
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-59 Score=417.48 Aligned_cols=218 Identities=34% Similarity=0.535 Sum_probs=195.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+++||||.|++ +.+++|+||+|++||+++++|||||||||+||+|.++++|++|+|++||+++.+++..++|++|
T Consensus 1 MI~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 1 MIEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred CceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhh
Confidence 4899999999984 3699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcCc-cccHHHHHhcCC-----CCCCCHHHHHHHHHHcCHH--HHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~-----~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
|||-|...|| ++||.|||++-. .....++++.+.++.++++ ++.+++| ++|||||+|||.+||
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP---------~eLSGGQQQRVGv~R 148 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP---------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc---------hhcCcchhhHHHHHH
Confidence 9999999999 689999998631 1111234455666777774 4777777 789999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|+|||+|||+++|||.++.++++.+.+++++ -|+|||+||||++++-. +|||.+|++|+|+..++|++++.+
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~--l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE--LGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHH--hCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999875 58999999999999855 999999999999999999999876
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 227 P 227 (309)
T COG1125 227 P 227 (309)
T ss_pred c
Confidence 4
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-55 Score=454.79 Aligned_cols=275 Identities=25% Similarity=0.311 Sum_probs=221.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCC
Q 017091 68 SPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTV 147 (377)
Q Consensus 68 t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~ 147 (377)
+.+.+.++..+...+..|+..+...+..++.+..+.+|+.++++.+++...+. ....+ ..+.|+++||+|+|+++ .
T Consensus 261 ~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~-~~~~~-~~~~i~~~~v~f~y~~~--~ 336 (547)
T PRK10522 261 DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPR-PQAFP-DWQTLELRNVTFAYQDN--G 336 (547)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-ccccC-cCceEEEEEEEEEeCCC--C
Confidence 44444444555555678999999999999999999999999876544322111 11111 12369999999999743 3
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 227 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 227 (377)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+...+|++|+||+|++.+|++|+++|
T Consensus 337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n 416 (547)
T PRK10522 337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE 416 (547)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc
Confidence 69999999999999999999999999999999999999999999999999999998899999999999999999999998
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHH
Q 017091 228 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 307 (377)
Q Consensus 228 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~ 307 (377)
+ ...+++++.++++..++.+.+.. +.+. .++.+||||||||++||||++++|++||||||||+||+++++.
T Consensus 417 ---~--~~~~~~~~~~~~~~~~l~~~~~~-~~~~---~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~ 487 (547)
T PRK10522 417 ---G--KPANPALVEKWLERLKMAHKLEL-EDGR---ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRRE 487 (547)
T ss_pred ---c--CchHHHHHHHHHHHcCCchhhhc-cccC---CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH
Confidence 2 23445555556666555544332 2221 1246899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEE-cChHH
Q 017091 308 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV-GNHAE 357 (377)
Q Consensus 308 i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~-g~~~~ 357 (377)
+.+.+.+..+. .++|+|+|||+++.++.||+|++|++|++++. |++.+
T Consensus 488 i~~~l~~~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~~ 536 (547)
T PRK10522 488 FYQVLLPLLQE--MGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERD 536 (547)
T ss_pred HHHHHHHHHHh--CCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCchh
Confidence 99988765321 37899999999999889999999999999987 34433
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-57 Score=416.05 Aligned_cols=224 Identities=30% Similarity=0.493 Sum_probs=198.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||||+|+|+++|.+|+|.+||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4899999999985 3799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcC-ccccHHHHHhcCCCCCC------C---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 211 GFVGQEPQL-LQMDIKSNIMYGCPKDV------K---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 211 ~~v~Q~~~l-~~~tv~eni~~~~~~~~------~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
|||||.+.. +..||+|-+.+|+.++. + .+.+.++++..++.++.++.- .+|||||||||.|
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~---------~~LSGGerQrv~i 149 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV---------DELSGGERQRVLI 149 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc---------cccChhHHHHHHH
Confidence 999999754 58899999999864321 1 224666788888887766543 5799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+++|++||||||||+||...+.++++.++++.++ +|+|+|+|+||++.+. +||++++|++|+++..|+|++++
T Consensus 150 ArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~--~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 150 ARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE--KGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999864 5899999999999875 59999999999999999999998
Q ss_pred hcCHHHHHHH
Q 017091 360 HKGRLYAKLV 369 (377)
Q Consensus 360 ~~~~~~~~~~ 369 (377)
+.+ ..++.|
T Consensus 228 T~e-~l~~Vy 236 (258)
T COG1120 228 TEE-NLREVY 236 (258)
T ss_pred CHH-HHHHHh
Confidence 754 334443
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-56 Score=398.57 Aligned_cols=226 Identities=31% Similarity=0.503 Sum_probs=196.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH---HHh
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r 207 (377)
.|++++|+++|+++ .|++||||+|++||+++|+||||||||||+|+|.|+++|++|+|+++|+++..++.. ++|
T Consensus 8 ~I~vr~v~~~fG~~---~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCCE---EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 59999999999754 699999999999999999999999999999999999999999999999999888764 468
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCC--CCCHHHHH----HHHHHcCHHHH-HHhCCCCcccccCCCCCChHHHHHHH
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCPK--DVKNEDIE----WAAKQAYVHEF-ILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~~--~~~~~~~~----~~~~~~~l~~~-~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
+++|++||+..|| ++||+||+.|.... +..++.++ ..++.+|+... .+.+| .+|||||++|++
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P---------sELSGGM~KRva 155 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP---------SELSGGMRKRVA 155 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc---------hhhcchHHHHHH
Confidence 8999999999999 78999999986421 22233332 23555666555 55566 789999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHH
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l 358 (377)
||||++.+|+++++|||||||||.+...+-++|+++++. -|.|+++||||++.+.. ||||+++.+|+|+..|+++++
T Consensus 156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~--lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDA--LGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHh--hCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999864 58999999999999876 899999999999999999999
Q ss_pred hhcCHHH-HHHHH
Q 017091 359 LHKGRLY-AKLVK 370 (377)
Q Consensus 359 ~~~~~~~-~~~~~ 370 (377)
.+.+..| ++++.
T Consensus 234 ~~sd~P~v~qf~~ 246 (263)
T COG1127 234 LASDDPWVRQFFN 246 (263)
T ss_pred HhCCCHHHHHHhc
Confidence 9875544 45443
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-54 Score=484.08 Aligned_cols=348 Identities=20% Similarity=0.291 Sum_probs=281.1
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhc--CCcCHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRS--TQVMAVLLGGMSIMI--GQVSPEQLTKYVL 77 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~v~~--g~lt~g~l~~~~~ 77 (377)
+++||.|+.|+.+.+++++..++..+...+.... ......+... ..+.++.++++.+.. +.++++.+++.+.
T Consensus 506 ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~ 581 (1522)
T TIGR00957 506 IKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYL----HAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLA 581 (1522)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Confidence 6899999999999999887766654443332222 1111121111 122333455676663 5689999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccc-ccccEEEEEEEEEcCCCCCCCceeeeeEE
Q 017091 78 YCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQR-LMGHVQFVNISFHYPSRPTVPILNHVCLT 156 (377)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~v~~~y~~~~~~~vL~~isl~ 156 (377)
++..+..|+..+...+..+.++..+.+|+.++++.+++............ ....|+++|++|+|++. .+++|+|+||+
T Consensus 582 l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~ 660 (1522)
T TIGR00957 582 LFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFS 660 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEE
Confidence 88889999999999999999999999999999987643221100011111 11269999999999753 24699999999
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 236 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 236 (377)
|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+||+|+|.+|++||+|||.++.+ .
T Consensus 661 i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~--~ 725 (1522)
T TIGR00957 661 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLRENILFGKA--L 725 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEEcCCccccCCcHHHHhhcCCc--c
Confidence 999999999999999999999999999999999999987 4999999999999999999999853 3
Q ss_pred CHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHH
Q 017091 237 KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 314 (377)
Q Consensus 237 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~ 314 (377)
.+++..++.+.+++.+.++.+|.|++|.++. .+||||||||++||||++++|+++|||||||+||+.+++.+.+.+..
T Consensus 726 ~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~ 805 (1522)
T TIGR00957 726 NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIG 805 (1522)
T ss_pred CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhh
Confidence 4556677788888889999999999998874 68999999999999999999999999999999999999999998865
Q ss_pred hhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 017091 315 LRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 370 (377)
Q Consensus 315 l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 370 (377)
.... .+++|+|+|||+++.+..||+|++|++|++++.|+++++.++.+.|.+++.
T Consensus 806 ~~~~-~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 860 (1522)
T TIGR00957 806 PEGV-LKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLR 860 (1522)
T ss_pred hhhh-hcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHH
Confidence 3211 247899999999999988999999999999999999999988888887765
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-56 Score=423.95 Aligned_cols=218 Identities=35% Similarity=0.524 Sum_probs=198.8
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
|..|+++||+++|++. .+|+|+||+|++||+++|+||||||||||||+|+||.+|++|+|.|+|.+++++++. .+
T Consensus 1 M~~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~--~R 75 (338)
T COG3839 1 MAELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE--KR 75 (338)
T ss_pred CcEEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--HC
Confidence 4569999999999753 299999999999999999999999999999999999999999999999999998876 46
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCC-----CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPK-----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
.||+|||+..|| ++||+|||+|+... ...++++.++++..++.+++++.| .+|||||||||||||
T Consensus 76 ~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P---------~~LSGGQrQRVAlaR 146 (338)
T COG3839 76 GIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP---------LQLSGGQRQRVALAR 146 (338)
T ss_pred CEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc---------ccCChhhHHHHHHHH
Confidence 799999999999 68999999998642 223567788899999999999998 679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+++|+++|||||+|+||++.+..+...|++++++ -|.|+|+||||..++.. +|||++|++|+|.+.|+|.+++++
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~--l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER--LGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHh--cCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 999999999999999999999999999999998764 58899999999998865 999999999999999999999876
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 225 P 225 (338)
T COG3839 225 P 225 (338)
T ss_pred c
Confidence 3
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=449.04 Aligned_cols=325 Identities=20% Similarity=0.240 Sum_probs=263.1
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh-c----CCcCHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRS--TQVMAVLLGGMSIM-I----GQVSPEQLTK 74 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~v~-~----g~lt~g~l~~ 74 (377)
+++||+|+.|+.+.+++++..+++.+...+..+..+.+.++..++... ..++.+++|+..+. . |.+|+|.+++
T Consensus 288 ~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~ 367 (659)
T TIGR00954 288 SEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQ 367 (659)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHH
Confidence 579999999999999999999999888888777766666665555432 22233334443332 2 7899998765
Q ss_pred -HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--------cc--cc-------------ccccc
Q 017091 75 -YVLY---CEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQF--------LS--EG-------------VKLQR 127 (377)
Q Consensus 75 -~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~--------~~--~~-------------~~~~~ 127 (377)
|+.+ +..+..|+..++..+..++++.++.+|++++++.+++... +. +. .....
T Consensus 368 ~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (659)
T TIGR00954 368 EFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEY 447 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccc
Confidence 5544 5667899999999999999999999999999976432110 00 00 00111
Q ss_pred ccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHh
Q 017091 128 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 207 (377)
Q Consensus 128 ~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r 207 (377)
..+.|+++||+|.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +
T Consensus 448 ~~~~i~~~nv~~~~~~~--~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~ 514 (659)
T TIGR00954 448 QDNGIKFENIPLVTPNG--DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------K 514 (659)
T ss_pred CCCeEEEEeeEEECCCC--CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------C
Confidence 22469999999999743 3699999999999999999999999999999999999999999998763 4
Q ss_pred cceEEEccCCcCccccHHHHHhcCCC------CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC-CCCChHHHHHHHH
Q 017091 208 EKIGFVGQEPQLLQMDIKSNIMYGCP------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAI 280 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~~tv~eni~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~LSgGq~QRv~i 280 (377)
++++||||+|.+|+.|++||+.++.. ....++++.++++.+++.+++++ |.|+++..+. .+||||||||++|
T Consensus 515 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~i 593 (659)
T TIGR00954 515 GKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAM 593 (659)
T ss_pred CcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHH
Confidence 57999999999998899999998642 22356678889999999998877 8888887763 6899999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeC
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~ 346 (377)
|||++++|+++|||||||+||+.+++.+.+.+++. |+|+|+||||++.++.||++++|+.
T Consensus 594 ARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~------~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 594 ARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF------GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc------CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999888653 7899999999999988999999973
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-56 Score=426.37 Aligned_cols=217 Identities=32% Similarity=0.535 Sum_probs=197.8
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..++++||+++|++ ..+++|+||+|++||+++|+||||||||||||+|+||.+|++|+|.++|+++...++. ++.
T Consensus 4 ~~l~i~~v~k~yg~---~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecCC---eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 35999999999984 4799999999999999999999999999999999999999999999999999998775 578
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCC-CC-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCP-KD-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~-~~-~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
||+|||+..|| ++||+|||+||.. .. .. .+++.++++.+++.++.++.| ++|||||||||||||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p---------~qLSGGQqQRVALAR 149 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP---------HQLSGGQQQRVALAR 149 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh---------hhhChHHHHHHHHHH
Confidence 99999999999 6999999999975 11 12 236778888999999888888 779999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|++||||||.|+||.+-+.++...++++.++ .|.|.|+||||-+++- .+|||++|++|+|...|+|++++..
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~--~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRE--LGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHh--cCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999999999999875 5999999999999875 5999999999999999999999876
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 228 P 228 (352)
T COG3842 228 P 228 (352)
T ss_pred c
Confidence 4
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-56 Score=389.97 Aligned_cols=220 Identities=30% Similarity=0.465 Sum_probs=192.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCC-----CeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~-----G~I~i~g~~i~~~--~~ 203 (377)
.++++||++.|++ +.+|+|||++|++++++|++||||||||||||++.++.+..+ |+|.++|+++-+. +.
T Consensus 7 ~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 5899999999985 369999999999999999999999999999999999998775 9999999999754 57
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv 278 (377)
.++|++||+|||.|..|++||+||+.||...+ .-++.++++++.+.+++-+... ++ ..+..||||||||+
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDr---L~--~sa~~LSGGQQQRL 158 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDR---LH--KSALGLSGGQQQRL 158 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHH---hh--CCccCCChhHHHHH
Confidence 88999999999999999999999999984321 1234567788888887654321 11 11246999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHH
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~ 357 (377)
||||||+.+|+|||+|||||+|||.+..+|.++|.+++ +..|||+|||+|..+.+ +|+..++..|+++|.|+.++
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk----~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK----KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH----hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 99999999999999999999999999999999999996 36799999999999877 89999999999999999999
Q ss_pred HhhcC
Q 017091 358 LLHKG 362 (377)
Q Consensus 358 l~~~~ 362 (377)
++.+.
T Consensus 235 iF~~P 239 (253)
T COG1117 235 IFTNP 239 (253)
T ss_pred hhcCc
Confidence 99875
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-55 Score=395.61 Aligned_cols=208 Identities=38% Similarity=0.538 Sum_probs=176.4
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH---H-H
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---W-L 206 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~-~ 206 (377)
++++||++.|+.+. ..++|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|.++|.++..++.. . +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996432 24699999999999999999999999999999999999999999999999999988743 2 3
Q ss_pred hcceEEEccCCcCc-cccHHHHHhcCC----CCC-CCHHHHHHHHHHcCHHHHHH-hCCCCcccccCCCCCChHHHHHHH
Q 017091 207 REKIGFVGQEPQLL-QMDIKSNIMYGC----PKD-VKNEDIEWAAKQAYVHEFIL-SLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 207 r~~i~~v~Q~~~l~-~~tv~eni~~~~----~~~-~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
|++||||||+.+|+ ..|+.|||.++. ... ...+.....++.+++.+... +.| .+||||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p---------~eLSGGqqQRVA 152 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP---------SELSGGQQQRVA 152 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc---------hhcCHHHHHHHH
Confidence 56799999999988 689999998532 111 11233344555556654444 444 789999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEE
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 350 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~ 350 (377)
|||||+.+|++||+||||++||.++.+.|++++.++.++ .|+|+|+||||+..+..|||++.|++|++.
T Consensus 153 IARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~--~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 153 IARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE--RGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999999999764 589999999999999999999999999953
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-55 Score=391.68 Aligned_cols=216 Identities=35% Similarity=0.522 Sum_probs=187.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC---HHHHh
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRWLR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~---~~~~r 207 (377)
+|+++||++.||++ +++|+||||+|++||+++|+||||||||||||+|.|+.+|++|+|.++|.++..++ .+.+|
T Consensus 3 ~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 59999999999754 57999999999999999999999999999999999999999999999999988776 45678
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCC-------------CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChH
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCPK-------------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 273 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~~-------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgG 273 (377)
++|||+||++.|. ..||.+|+..|.-. ........++++++++.+..... ..+||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr---------a~~LSGG 151 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR---------ASTLSGG 151 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH---------hccCCcc
Confidence 8999999999998 68999999876321 11122334456666665554332 2679999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEE
Q 017091 274 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV 352 (377)
Q Consensus 274 q~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~ 352 (377)
|+|||+|||||+++|+++|.|||+|+|||.+.+++++.|+++.++ .|.|+|+.-|+++.++. ||||+-|++|+|+.+
T Consensus 152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~--~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQE--DGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHH--cCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999999875 68999999999999965 999999999999999
Q ss_pred cChHHHh
Q 017091 353 GNHAELL 359 (377)
Q Consensus 353 g~~~~l~ 359 (377)
|++.++-
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9998854
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=398.72 Aligned_cols=215 Identities=30% Similarity=0.542 Sum_probs=187.2
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..|+++|++++|++. ++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.+...... +.+
T Consensus 3 ~~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~ 76 (254)
T COG1121 3 PMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLR 76 (254)
T ss_pred cEEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCe
Confidence 359999999999753 59999999999999999999999999999999999999999999999988755321 467
Q ss_pred eEEEccCCc---CccccHHHHHhcCCCCC---------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 210 IGFVGQEPQ---LLQMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 210 i~~v~Q~~~---l~~~tv~eni~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
||||||... -|+.||+|-+.+|+... .+.+.+.++++.+++.++.++.- .+|||||+||
T Consensus 77 IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i---------~~LSGGQ~QR 147 (254)
T COG1121 77 IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQI---------GELSGGQKQR 147 (254)
T ss_pred EEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcc---------cccCcHHHHH
Confidence 999999764 36899999999874321 12467888999999988766533 5799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
|.|||||+++|++|+|||||+|+|+.++..+.++|+++++ +|+||++||||++.+.. +|+|+.|+ ++++..|+++
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~---eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~ 223 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ---EGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPE 223 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChh
Confidence 9999999999999999999999999999999999999975 39999999999999865 99999995 6788999999
Q ss_pred HHhhcCH
Q 017091 357 ELLHKGR 363 (377)
Q Consensus 357 ~l~~~~~ 363 (377)
++++.+.
T Consensus 224 ~~~~~~~ 230 (254)
T COG1121 224 EVLTEEN 230 (254)
T ss_pred hccCHHH
Confidence 9987543
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=380.44 Aligned_cols=210 Identities=31% Similarity=0.492 Sum_probs=189.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH---HHh
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r 207 (377)
+|+++||++.|+++ +++|+||||+|++||++.|+||||||||||+|+|++..+|++|+|+++|.++..++.+ .+|
T Consensus 1 mI~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 1 MIRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred CeeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhh
Confidence 48999999999875 5799999999999999999999999999999999999999999999999999887643 579
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCC-----CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
++||+||||..|. ..||+||++|+.. +..-.+++.++++.+++.+-...+| .+|||||||||+||
T Consensus 79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP---------~~LSGGEQQRvaIA 149 (223)
T COG2884 79 RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP---------SQLSGGEQQRVAIA 149 (223)
T ss_pred heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc---------cccCchHHHHHHHH
Confidence 9999999999887 7899999998642 2223556777889999988888888 67999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
||++.+|++||.||||.+|||....++++++.++.+ .|.||+|.|||.+.+.. --|++.+++|+++.+..
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr---~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR---LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh---cCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999974 59999999999999987 57899999999987654
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-55 Score=395.06 Aligned_cols=201 Identities=34% Similarity=0.528 Sum_probs=178.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.+++++|+++|++ ..+|+|+||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 5899999999986 3699999999999999999999999999999999999999999999999988443 3569
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
+||||++.|| -.||+||+.++.... ...+...+.++.+++.++.+++| ++|||||||||+|||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P---------~qLSGGMrQRVaiARAL 145 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP---------HQLSGGMRQRVAIARAL 145 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc---------cccChHHHHHHHHHHHH
Confidence 9999999999 589999999875421 12345667788888888888888 78999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC--CEEE
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRII 350 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~--G~i~ 350 (377)
+.+|++||||||+++||+.++..+++.+.++.++ .++||++||||++++-. +|||++|.+ |+|.
T Consensus 146 ~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~--~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 146 ATRPKLLLLDEPFGALDALTREELQDELLRLWEE--TRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred hcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 9999999999999999999999999999998764 57899999999999865 999999998 5553
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-54 Score=387.76 Aligned_cols=229 Identities=35% Similarity=0.504 Sum_probs=195.6
Q ss_pred ccEEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC-HHHHh
Q 017091 130 GHVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLR 207 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-~~~~r 207 (377)
..++++|+++.|+++. ..++|+||||+|.+||++||+||||||||||.++|+|+.+|++|+|.++|.++.... .+.++
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 3589999999998642 125999999999999999999999999999999999999999999999998876543 33567
Q ss_pred cceEEEccCCcC---ccccHHHHHhcCCCC---CCCHHHHHHHHHHcCH-HHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 208 EKIGFVGQEPQL---LQMDIKSNIMYGCPK---DVKNEDIEWAAKQAYV-HEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 208 ~~i~~v~Q~~~l---~~~tv~eni~~~~~~---~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+.|.+|||||.- ...||++-|.-+... +...+++.++++.+++ .++++++| ++|||||+|||||
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P---------~eLSGGQ~QRiaI 152 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP---------HELSGGQRQRIAI 152 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc---------hhcChhHHHHHHH
Confidence 889999999953 246898888654322 2234557778888888 45778888 6799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||..+|++||||||||+||+..+.+|++++.+++++ .+.|.|+||||+..+.+ ||||+||++|+++|.++.+++.
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~--~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE--RGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh--cCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 99999999999999999999999999999999999875 58899999999999987 9999999999999999999998
Q ss_pred hc-CHHHHHHH
Q 017091 360 HK-GRLYAKLV 369 (377)
Q Consensus 360 ~~-~~~~~~~~ 369 (377)
.. ...|.+.+
T Consensus 231 ~~~~h~ytr~L 241 (252)
T COG1124 231 SHPSHPYTREL 241 (252)
T ss_pred cCCccHHHHHH
Confidence 76 44465443
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=402.66 Aligned_cols=233 Identities=24% Similarity=0.415 Sum_probs=211.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++..++...+|+.|
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 48999999999643 2469999999999999999999999999999999999997 799999999999888888889999
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p 288 (377)
+|+||++.+|+.|+++|+.... ....++++++++.+++.++++.+|.++++.+++ .+||||||||++||||++.+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~--~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYG--KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEECCCcccchhhHHHHhhhcc--CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999996421 234677888899999999999999999998863 689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHH
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 368 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 368 (377)
+||||||||++||+.+.+.+.+.|+++. .++|||+|||+++.+..||||++|++|++++.|+|+++++..+.|+++
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~----~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~ 233 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAF----ADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQA 233 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhc----CCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHH
Confidence 9999999999999999999999999763 478999999999998889999999999999999999999987778887
Q ss_pred HHH
Q 017091 369 VKR 371 (377)
Q Consensus 369 ~~~ 371 (377)
+..
T Consensus 234 ~~~ 236 (275)
T cd03289 234 ISP 236 (275)
T ss_pred Hhh
Confidence 754
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-54 Score=396.50 Aligned_cols=219 Identities=36% Similarity=0.607 Sum_probs=194.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC-CCHHHHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-LDIRWLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~-~~~~~~r~~ 209 (377)
.++++|++|+|+++ .++|+++||+|++||.++|+||||||||||+++++|+++|++|+|.++|.++.. .+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 58999999999864 479999999999999999999999999999999999999999999999999873 667889999
Q ss_pred eEEEccCC--cCccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 210 IGFVGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 210 i~~v~Q~~--~l~~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
+|||||+| ++|..||.|.++||... ... ++++.++++.+++.++.++.| .+|||||||||+||.
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p---------~~LSGGqkqRvaIA~ 151 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP---------FNLSGGQKQRVAIAG 151 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc---------cccCCcceeeHHhhH
Confidence 99999999 67899999999998531 122 234556777777777766555 679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+|+.+|++||||||||+||+..++.+++.+++++++ .|+|+|++|||++.+.. |||+++|++|+++.+|+|++++++
T Consensus 152 vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~--~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 152 VLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE--GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999999763 47899999999999976 999999999999999999999876
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 230 ~ 230 (235)
T COG1122 230 A 230 (235)
T ss_pred h
Confidence 4
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-52 Score=450.73 Aligned_cols=348 Identities=24% Similarity=0.338 Sum_probs=280.7
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcCHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMS-IMIGQVSPEQLTKYVLYCE 80 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~g~lt~g~l~~~~~~~~ 80 (377)
|++||.|+.|+.+.++.++.-++-...-.+.....++......... ..+.++.++++. ...+.+|+...++.+.++.
T Consensus 390 IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p--~lv~~~tF~~~v~~~~~~lt~~~aF~slalfn 467 (1381)
T KOG0054|consen 390 IKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSP--VLVSVVTFVVFVLLLGNLLTASTAFTSLALFN 467 (1381)
T ss_pred hHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhccCccccHhHHHHHHHHHH
Confidence 7899999999988887766544333322222222222211111111 222334444555 4566788888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 81 WLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
.+..|+..+...+..+.++.++.+|+.+++..+..................++++|.+|+++.....+.|+||||+|++|
T Consensus 468 iLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G 547 (1381)
T KOG0054|consen 468 ILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKG 547 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCC
Confidence 99999999999999999999999999999977543322111001112233699999999997633346999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
+.+||+||.|||||+|+.+|+|.++..+|+|.++|. ++||||.|++|++||+|||.||.+ ..+++
T Consensus 548 ~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------------iaYv~Q~pWI~ngTvreNILFG~~--~d~~r 612 (1381)
T KOG0054|consen 548 QLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------------VAYVPQQPWIQNGTVRENILFGSP--YDEER 612 (1381)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-------------EEEeccccHhhCCcHHHhhhcCcc--ccHHH
Confidence 999999999999999999999999999999999984 899999999999999999999954 45788
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHH-Hhhc
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH-ALRN 317 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~-~l~~ 317 (377)
.+++.+.|.+++.++.+|.|..|.+|+ .+|||||||||+||||++++++|+|||.|+|++|.+..+.+.+..- .+
T Consensus 613 Y~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~-- 690 (1381)
T KOG0054|consen 613 YDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL-- 690 (1381)
T ss_pred HHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh--
Confidence 899999999999999999999999996 4899999999999999999999999999999999998887776543 33
Q ss_pred cCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 017091 318 DCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 370 (377)
Q Consensus 318 ~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 370 (377)
-+++|+|+|||.++.++.||+|++|++|+|.+.|+++|+++....+.++..
T Consensus 691 --L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~ 741 (1381)
T KOG0054|consen 691 --LRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAH 741 (1381)
T ss_pred --hcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhh
Confidence 357999999999999999999999999999999999999988888887743
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=414.31 Aligned_cols=220 Identities=31% Similarity=0.475 Sum_probs=189.0
Q ss_pred cEEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH---H
Q 017091 131 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~ 206 (377)
+|+++||+++|+++. ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+..+ .
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 389999999996421 246999999999999999999999999999999999999999999999999998776543 4
Q ss_pred hcceEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 207 REKIGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 207 r~~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
|++|||+||++.+| ..|++||+.++... ... .+++.+.++.+++.++.+..| .+|||||||||+|
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~---------~~LSgGqkQRV~I 151 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP---------SNLSGGQKQRVAI 151 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHH
Confidence 77899999999998 58999999875321 111 223445666666666655555 6799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++||+|||||+||+.++..+++.|++++++ .|.|||+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 152 ARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~--~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 152 ARALASNPKVLLCDEATSALDPATTQSILELLKEINRR--LGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999753 48899999999999965 9999999999999999999998
Q ss_pred hc
Q 017091 360 HK 361 (377)
Q Consensus 360 ~~ 361 (377)
..
T Consensus 230 ~~ 231 (343)
T TIGR02314 230 SH 231 (343)
T ss_pred cC
Confidence 64
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-54 Score=368.06 Aligned_cols=214 Identities=35% Similarity=0.531 Sum_probs=193.8
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
+.+++|.|+|+.. ==.++++|++||++||+||||||||||+++|+|+..|.+|+|++||++....++. .+-++
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 6789999999743 3578999999999999999999999999999999999999999999999876654 46799
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCCC-----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPKDV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
++||+.+|| ..||.+|+.+|..+.. ..+.+..++.++|+..+.+++| .+|||||||||+|||+|+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP---------~~LSGGqRQRvALARclv 145 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP---------GELSGGQRQRVALARCLV 145 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc---------cccCchHHHHHHHHHHHh
Confidence 999999999 7899999999875432 2456778899999999999999 679999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcCH
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGR 363 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~~ 363 (377)
++-+|||||||+|+|||.-+.++..++.+++.+ ++.|++||||.++.+.. +|+++++++|+|.+.|+.++++....
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E--~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDE--RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 999999999999999999999999999999875 58999999999999976 99999999999999999999987643
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-53 Score=390.20 Aligned_cols=233 Identities=48% Similarity=0.754 Sum_probs=204.6
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999643 246999999999999999999999999999999999999999999999999987766667788899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~ 289 (377)
|+||++.+|+.|+.||+.++.. ....+.+...++..++.++++.+|.++++... ..+|||||||||+|||||+.+|+
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EEcCCchhccchHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 9999999888899999988643 23344555666777888889988877776543 46899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 369 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 369 (377)
+|||||||++||+.+++.+.+.|+++. +|+|||++||+++.+..||++++|++|++++.|++++++.+.+.|..++
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDIC----AGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 999999999999999999999999884 3789999999999997799999999999999999999998877787765
Q ss_pred H
Q 017091 370 K 370 (377)
Q Consensus 370 ~ 370 (377)
.
T Consensus 235 ~ 235 (237)
T cd03252 235 Q 235 (237)
T ss_pred h
Confidence 4
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-54 Score=395.31 Aligned_cols=216 Identities=31% Similarity=0.494 Sum_probs=190.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCE---eCCCCCHHHHh
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLDIRWLR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~---~i~~~~~~~~r 207 (377)
+|+++|+++.|+.. .+++|||++|+.||.+|+.||||||||||||+|+|+..|++|.|.+||+ |.+..+ ...
T Consensus 2 ~i~i~~~~~~~~~~---~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGAF---GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhcccc---cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 58999999999754 6999999999999999999999999999999999999999999999999 555433 234
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCCC-------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCPKD-------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
++||||||+..+| .+||.+||+||.+.. ..+.++.+.++.+++..+-+++| .+||||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP---------~QLSGGQrQRVA 147 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP---------AQLSGGQRQRVA 147 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc---------hhcChHHHHHHH
Confidence 6799999999998 799999999996321 22345566677777777777777 679999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHH
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l 358 (377)
|||||+.+|++||||||+++||..-+.++...|+++.++ -|.|+++||||.+++.. ||||++|++|+|...|+++|+
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~--~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR--LGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHh--hCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 999999999999999999999999999999999999764 48999999999999865 999999999999999999999
Q ss_pred hhcC
Q 017091 359 LHKG 362 (377)
Q Consensus 359 ~~~~ 362 (377)
+...
T Consensus 226 ~~~P 229 (345)
T COG1118 226 YDHP 229 (345)
T ss_pred hcCC
Confidence 8754
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-51 Score=459.81 Aligned_cols=341 Identities=23% Similarity=0.346 Sum_probs=272.2
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
|++||.|+.|+.+.+++++.-++..+...+..... .+......+ ....+.++.+++|.+..+ ++++.+++++.++..
T Consensus 270 ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~l 346 (1490)
T TIGR01271 270 IQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLR-YFYSSAFFF-SGFFVVFLSVVPYALIKG-IILRRIFTTISYCIV 346 (1490)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 68999999999998888776655444433332221 111111111 222344556667777654 688998888888888
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCC----------------
Q 017091 82 LIYATW-RMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSR---------------- 144 (377)
Q Consensus 82 ~~~~~~-~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~---------------- 144 (377)
+..|+. .+...+..+.++.++++||.+++..++..... . ......++++|++|.|+..
T Consensus 347 L~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~---~--~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 421 (1490)
T TIGR01271 347 LRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLE---Y--NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARK 421 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc---c--cCCCCceEEecceEecCCccccccccccccccccc
Confidence 888874 68888899999999999999999765432111 0 0011248889999988521
Q ss_pred ---------------CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 145 ---------------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 145 ---------------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 422 ~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~ 488 (1490)
T TIGR01271 422 QPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------R 488 (1490)
T ss_pred cccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------E
Confidence 013589999999999999999999999999999999999999999999988 3
Q ss_pred eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCC
Q 017091 210 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 210 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~ 287 (377)
|+|++|+|++|++||+|||.|+.+ ...++..++++.+++.+.++.+|.|+.|.++. .+|||||||||+||||++.+
T Consensus 489 iayv~Q~~~l~~~Ti~eNI~~g~~--~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~ 566 (1490)
T TIGR01271 489 ISFSPQTSWIMPGTIKDNIIFGLS--YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKD 566 (1490)
T ss_pred EEEEeCCCccCCccHHHHHHhccc--cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcC
Confidence 999999999999999999999843 33445666777888999999999999998874 68999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHH-HHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHH
Q 017091 288 PAILLLDEATSALDSESEHYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYA 366 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~-l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~ 366 (377)
|+++|||||||+||+.+++.+.+. +..+. +++|+|+|||+++.+..||+|++|++|++++.|+++++...+..|.
T Consensus 567 ~~illLDep~saLD~~~~~~i~~~~l~~~~----~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~~~~~ 642 (1490)
T TIGR01271 567 ADLYLLDSPFTHLDVVTEKEIFESCLCKLM----SNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFS 642 (1490)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHh----cCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcChHHH
Confidence 999999999999999999999974 56553 4789999999999998899999999999999999999987766666
Q ss_pred HHH
Q 017091 367 KLV 369 (377)
Q Consensus 367 ~~~ 369 (377)
+.+
T Consensus 643 ~~~ 645 (1490)
T TIGR01271 643 SLL 645 (1490)
T ss_pred HHH
Confidence 555
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=410.21 Aligned_cols=218 Identities=28% Similarity=0.471 Sum_probs=190.5
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..|+++||+++|++. ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++. ++.
T Consensus 2 ~~l~i~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 77 (356)
T PRK11650 2 AGLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRD 77 (356)
T ss_pred CEEEEEeEEEEeCCC--CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 358999999999422 3699999999999999999999999999999999999999999999999999876654 468
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
||||||++.+| .+||+||+.|+... ... .+++.++++..++.++.++.| .+|||||||||+||||
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~QRvalARA 148 (356)
T PRK11650 78 IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP---------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh---------hhCCHHHHHHHHHHHH
Confidence 99999999999 58999999987431 112 234556777778877777766 6799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|+.+|++||||||||+||+.+++.+.+.|+++.++ .|.|+|+||||++++.. ||+|++|++|++++.|++++++++.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR--LKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999999998653 48899999999998865 9999999999999999999998764
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=388.86 Aligned_cols=220 Identities=30% Similarity=0.477 Sum_probs=182.8
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH---HHHhc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~~r~ 208 (377)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+. ..+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999974 369999999999999999999999999999999999999999999999999876553 45678
Q ss_pred ceEEEccCCcCcc-ccHHHHHhcCCCC--CCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 209 KIGFVGQEPQLLQ-MDIKSNIMYGCPK--DVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 209 ~i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
.|+|+||++.+|. .|++||+.++... ....+ .+.++++..++.++.++.+ .+|||||||||+||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~ia 148 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP---------AELSGGMKKRVALA 148 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHH
Confidence 8999999998885 6999999875211 11221 2233344444433333222 57999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|||+.+|++|||||||++||+.++..+.+.|+++.++ .|+|||+||||++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 149 RALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE--LGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 9999999999999999999999999999999998642 37899999999999875 99999999999999999999876
Q ss_pred cCHHH
Q 017091 361 KGRLY 365 (377)
Q Consensus 361 ~~~~~ 365 (377)
....|
T Consensus 227 ~~~~~ 231 (235)
T cd03261 227 SDDPL 231 (235)
T ss_pred CCChh
Confidence 54444
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-52 Score=407.63 Aligned_cols=218 Identities=31% Similarity=0.499 Sum_probs=189.3
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
|..|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...++. ++
T Consensus 4 ~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r 78 (351)
T PRK11432 4 KNFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QR 78 (351)
T ss_pred CcEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HC
Confidence 346999999999974 3599999999999999999999999999999999999999999999999999876543 57
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
+||||||++.+| .+||+||+.|+... ... .+++.++++..++.++.++.| .+|||||||||+|||
T Consensus 79 ~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~---------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV---------DQISGGQQQRVALAR 149 (351)
T ss_pred CEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHH
Confidence 899999999999 57999999987421 111 234455666666666665555 679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|++||||||||+||+.+++.+.+.|+++.++ .|.|+|+||||++++.. ||+|++|++|++++.|++++++.+
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ--FNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999998653 47899999999999865 999999999999999999999865
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 228 p 228 (351)
T PRK11432 228 P 228 (351)
T ss_pred C
Confidence 3
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=381.83 Aligned_cols=230 Identities=53% Similarity=0.844 Sum_probs=201.3
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999753 236999999999999999999999999999999999999999999999999987666666778899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~ 289 (377)
|+||++.+|+.|++||+.++.. ......+....+..++.++++.+|.++.+..+ ...||||||||++|||||+.+|+
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred EeCCCCeeccccHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999998899999988643 22344555666777888999988877766554 46899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHH
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 367 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~ 367 (377)
++||||||++||+.+++.+.+.|+++. ++.|||++||+++.+..||++++|++|++++.|+++++......|+.
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 232 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLM----KNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAK 232 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhh
Confidence 999999999999999999999999884 36899999999999877999999999999999999998877665544
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=382.00 Aligned_cols=233 Identities=57% Similarity=0.917 Sum_probs=201.7
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
++++|+++.|++..+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997532246999999999999999999999999999999999999999999999999987666666677899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~ 289 (377)
|++|++.+++.|++||+.++.. ....++....++..++.++++.+|.++++... ..+||||||||++|||||+.+|+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKP-DATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EECCchhhhhhhHHHHhhccCC-CCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9999998888899999988643 22344455566677888888888877766554 36899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 369 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 369 (377)
+|||||||++||+.+++.+.+.|++++ +|+|||++||+++.+..||++++|++|++++.|+.+++......+++++
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~----~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 235 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAM----KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHHh
Confidence 999999999999999999999999884 3789999999999987899999999999999999999887766555554
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=391.89 Aligned_cols=221 Identities=35% Similarity=0.545 Sum_probs=190.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999742223599999999999999999999999999999999999999999999999999776666778889
Q ss_pred EEEccCCc--CccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 211 GFVGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 211 ~~v~Q~~~--l~~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
||+||++. ++..||+|||.++... ..+ .+.+.++++.+++.++.+..| .+||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qrv~lAra 154 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP---------ARLSGGQKQRVAIAGA 154 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 99999983 4578999999876321 112 234555667777766666555 6799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|+.+|++|||||||++||+.+++.+.+.|++++++ .|+|||++|||++.+..||+|++|++|++++.|+++++....
T Consensus 155 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 155 VAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD--YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 99999999999999999999999999999998642 388999999999998779999999999999999999887654
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=379.79 Aligned_cols=233 Identities=51% Similarity=0.785 Sum_probs=205.2
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
++++|++++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999642 35999999999999999999999999999999999999999999999999988777777788899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~ 289 (377)
|++|++.+|+.|++||+.++.. ....+.+...++..++.++++.+|.++++... ...||||||||++|||||+.+|+
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred EECCCChhhcchHHHHHhhcCC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999988643 23445556667777888888998888877654 36899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 369 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 369 (377)
+|||||||++||+.+...+.+.|.+++ + |+|||++||+++.+..||++++|++|++++.|+.+++......|+.++
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~---~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~ 233 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVS---K-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMW 233 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc---C-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHH
Confidence 999999999999999999999999884 2 789999999999997799999999999999999999888776676665
Q ss_pred HH
Q 017091 370 KR 371 (377)
Q Consensus 370 ~~ 371 (377)
.+
T Consensus 234 ~~ 235 (236)
T cd03253 234 KA 235 (236)
T ss_pred hc
Confidence 43
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-52 Score=404.47 Aligned_cols=217 Identities=29% Similarity=0.455 Sum_probs=187.4
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++. ++.
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ 77 (353)
T TIGR03265 3 PYLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRD 77 (353)
T ss_pred cEEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 35999999999974 3599999999999999999999999999999999999999999999999999876553 567
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
||||||++.+| .+||+||+.|+... ... .+++.++++..++.++.++.| .+|||||||||+||||
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~---------~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 78 YGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP---------GQLSGGQQQRVALARA 148 (353)
T ss_pred EEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh---------hhCCHHHHHHHHHHHH
Confidence 99999999999 58999999986421 111 223445555555555555444 6799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|+.+|++||||||||+||+.++..+.+.|+++.++ .|.|+|+||||++++.. ||+|++|++|++++.|++++++++.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR--LGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999998653 47899999999999865 9999999999999999999998753
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-51 Score=376.95 Aligned_cols=224 Identities=48% Similarity=0.794 Sum_probs=198.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++|++++|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 48999999999742 3599999999999999999999999999999999999999999999999998776666778889
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p 288 (377)
+|+||++.+|..|++||+.+... .....++..+++..++.++++.+|.++.+... ..+|||||||||+|||||+.+|
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999888899999988633 23345566677778899999998877776554 3689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+++||||||++||+.+++.+.+.|.++. +++|||++||+++.+..||++++|++|++++.|+.+++.+.
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLM----KGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 9999999999999999999999999883 37899999999999877999999999999999998887654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-51 Score=400.00 Aligned_cols=219 Identities=34% Similarity=0.525 Sum_probs=184.5
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH---Hh
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 207 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~r 207 (377)
|+++||+|+|+.+. .+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997211 246999999999999999999999999999999999999999999999999998766543 46
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
++|||+||++.+| ..|++||+.++.. ..... +++.+.++..++.++.++.| .+||||||||++||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qRv~lA 152 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP---------AQLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHH
Confidence 7899999999988 5899999987521 11111 22334455555544444333 67999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|||+.+|++|||||||++||+.++..+.+.|+++.++ .|+|||++||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRE--LGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999998642 47899999999999875 99999999999999999999976
Q ss_pred c
Q 017091 361 K 361 (377)
Q Consensus 361 ~ 361 (377)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 5
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-51 Score=405.27 Aligned_cols=223 Identities=24% Similarity=0.418 Sum_probs=192.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..++++++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 5899999999975 3699999999999999999999999999999999999999999999999999888878888899
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC---------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
||++|++.++ .+|++||+.++.... ...+.+.++++..++.++.++.+ .+||||||||++|
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~---------~~LSgGerQRv~I 150 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV---------TSLSGGERQRVLL 150 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHH
Confidence 9999999874 899999998864211 11233455666666665554433 5799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+++|++|||||||++||+.++.+++++|+++.+ .|.|||++|||++.+.. |||+++|++|++++.|++++++
T Consensus 151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~---~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD---DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999964 37899999999999965 9999999999999999999988
Q ss_pred hcCHHHHHHH
Q 017091 360 HKGRLYAKLV 369 (377)
Q Consensus 360 ~~~~~~~~~~ 369 (377)
... .+.+.|
T Consensus 228 ~~~-~l~~~~ 236 (402)
T PRK09536 228 TAD-TLRAAF 236 (402)
T ss_pred CcH-HHHHHh
Confidence 653 344444
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-51 Score=378.98 Aligned_cols=226 Identities=34% Similarity=0.548 Sum_probs=188.3
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 2 ~~l~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 78 (241)
T PRK14250 2 NEIEFKEVSYSSFGK---EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRK 78 (241)
T ss_pred ceEEEEeEEEEeCCe---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhc
Confidence 458999999999743 59999999999999999999999999999999999999999999999999877666667788
Q ss_pred eEEEccCCcCccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 210 IGFVGQEPQLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 210 i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
++|+||++.+|+.|++||+.++... ....+++.+.++..++. ++.++. ..+||||||||++|||||+.+
T Consensus 79 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 79 IGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRD---------VKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCC---------cccCCHHHHHHHHHHHHHhcC
Confidence 9999999999888999999875321 11122334444444442 222222 367999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC-HHH
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG-RLY 365 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~-~~~ 365 (377)
|++|||||||++||+.+++.+.+.|+++.++ .|.|||++|||++.+.. ||+|++|++|++++.|++++++... ..|
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 227 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNK--MNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEV 227 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHH
Confidence 9999999999999999999999999998642 37899999999999875 9999999999999999999987643 234
Q ss_pred HHHH
Q 017091 366 AKLV 369 (377)
Q Consensus 366 ~~~~ 369 (377)
...+
T Consensus 228 ~~~~ 231 (241)
T PRK14250 228 TKLF 231 (241)
T ss_pred HHHH
Confidence 4433
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=379.94 Aligned_cols=237 Identities=32% Similarity=0.534 Sum_probs=208.0
Q ss_pred ccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHh
Q 017091 128 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 207 (377)
Q Consensus 128 ~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r 207 (377)
..+.|+++|++++|++. .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...++
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 45579999999999753 24699999999999999999999999999999999999999999999999999877777778
Q ss_pred cceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHc
Q 017091 208 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~ 285 (377)
+.|+|++|++.+|+.|++||+.... ....+.+..+++..++.++++.+|.++++... ..+||||||||++|||||+
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC--KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC--CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 8999999999999889999987542 12344566677778889999999888888765 3689999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc-CHH
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRL 364 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~ 364 (377)
.+|++|||||||++||+.+++.+.+.++++. ++.|+|++||+++.+..||+|++|++|++++.|+++++.+. .+.
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~----~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~ 248 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAF----ADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGV 248 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhc----CCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchH
Confidence 9999999999999999999999999998863 37899999999999988999999999999999999999865 456
Q ss_pred HHHHHHH
Q 017091 365 YAKLVKR 371 (377)
Q Consensus 365 ~~~~~~~ 371 (377)
|++++..
T Consensus 249 ~~~~~~~ 255 (257)
T cd03288 249 FASLVRT 255 (257)
T ss_pred HHHHHhc
Confidence 7777654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-51 Score=389.08 Aligned_cols=220 Identities=31% Similarity=0.524 Sum_probs=181.6
Q ss_pred cEEEEEEEEEcCCCC--CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC--HHHH
Q 017091 131 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWL 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~--~~~~ 206 (377)
.|+++||+|+|++.. .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 389999999997421 136999999999999999999999999999999999999999999999999987643 3466
Q ss_pred hcceEEEccCC--cCccccHHHHHhcCCCC-CCCHH----HHHHHHHHcCHH--HHHHhCCCCcccccCCCCCChHHHHH
Q 017091 207 REKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNE----DIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 207 r~~i~~v~Q~~--~l~~~tv~eni~~~~~~-~~~~~----~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
+++|||+||++ .+|..|++||+.++... ....+ .+.++++.+++. ++.+. ....||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDK---------SPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccC---------CcccCCHHHHHH
Confidence 78899999998 46788999999875311 12222 223334444432 12221 236799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.++..+.+.|+++.++ .|.|||++|||++.+. .||||++|++|++++.|+++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE--YNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998642 4789999999999986 59999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++++.
T Consensus 231 ~~~~~ 235 (287)
T PRK13637 231 EVFKE 235 (287)
T ss_pred HHHhC
Confidence 98653
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-51 Score=393.98 Aligned_cols=224 Identities=29% Similarity=0.447 Sum_probs=181.8
Q ss_pred cEEEEEEEEEcCCCC--CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC-------
Q 017091 131 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL------- 201 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~------- 201 (377)
.|+++||+|+|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++...
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999997421 13699999999999999999999999999999999999999999999999988642
Q ss_pred ---------CHHHHhcceEEEccCC--cCccccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCC
Q 017091 202 ---------DIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDD 268 (377)
Q Consensus 202 ---------~~~~~r~~i~~v~Q~~--~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~ 268 (377)
....+|++|+||||++ .+|..|++||+.++.. .....++... .+.++++.+.... .....+.
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~ 175 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK-----LAKFYLNKMGLDDSYLERSPF 175 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHcCCChhHhcCCcc
Confidence 2346788899999998 5788899999988631 1122222111 1223344433210 1112236
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDG 347 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G 347 (377)
+||||||||++|||||+.+|++|||||||++||+.++..+.+.|.++++ +|+|||+||||++.+. .||+|++|++|
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~---~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA---NNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 8999999999999999999999999999999999999999999998863 4789999999999885 59999999999
Q ss_pred EEEEEcChHHHhhcC
Q 017091 348 RIIEVGNHAELLHKG 362 (377)
Q Consensus 348 ~i~~~g~~~~l~~~~ 362 (377)
++++.|++++++...
T Consensus 253 ~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 253 KILKTGTPYEIFTDQ 267 (320)
T ss_pred EEEEeCCHHHHhcCH
Confidence 999999999886543
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-51 Score=399.70 Aligned_cols=216 Identities=30% Similarity=0.487 Sum_probs=186.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. .++.|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 4899999999975 369999999999999999999999999999999999999999999999999876543 35679
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCC-----CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPK-----DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~-----~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+|+||++.+| .+|++||+.++... ... .+++.++++..++.++.++.| .+|||||||||+|
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGq~QRval 147 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP---------AQLSGGQKQRVAL 147 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHH
Confidence 9999999998 57999999986421 111 123445566666655555544 6799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++|||||||++||+.++..+.+.|+++.++ .|.|+|+||||++++.. ||+|++|++|++++.|++++++
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE--LKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999998653 47899999999999865 9999999999999999999998
Q ss_pred hcC
Q 017091 360 HKG 362 (377)
Q Consensus 360 ~~~ 362 (377)
.+.
T Consensus 226 ~~p 228 (353)
T PRK10851 226 REP 228 (353)
T ss_pred hCc
Confidence 753
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=402.18 Aligned_cols=216 Identities=31% Similarity=0.484 Sum_probs=189.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.+
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999974 3599999999999999999999999999999999999999999999999999776553 4679
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
|||||++.+| .+||+|||.|+... ... .+++.++++..++.+++++.| .+|||||||||+|||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p---------~~LSgGq~QRVaLARaL 159 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP---------HQLSGGQQQRVAIARAV 159 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHHHHH
Confidence 9999999999 67999999987421 111 234455677777777777766 67999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
+.+|++||||||||+||+.++..+.+.|+++.++ .|.|+|+||||++++.. ||+|++|++|++++.|++++++.+.
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRK--LGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999999998753 48899999999999865 9999999999999999999998764
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-51 Score=375.66 Aligned_cols=205 Identities=35% Similarity=0.561 Sum_probs=172.9
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH---HHhc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLRE 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r~ 208 (377)
|+++|++++|+++ .+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .+++
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999643 13699999999999999999999999999999999999999999999999998665432 3567
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCC-CC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
.++|+||++.+| ..|++||+.++... .. ..+++.++++..++.++.+..| .+||||||||++|||
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~lar 151 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP---------MQLSGGEQQRVAIAR 151 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHHHH
Confidence 899999999888 47999999864210 11 1233455566666655555444 579999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
||+.+|++|||||||++||+.+++.+.+.|+++++ .|.|||+||||++.+.. ||++++|++|++
T Consensus 152 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 152 AIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR---RGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998853 37899999999999875 999999999975
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-51 Score=388.78 Aligned_cols=219 Identities=25% Similarity=0.463 Sum_probs=181.2
Q ss_pred cEEEEEEEEEcCCCCC--CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC----CCHH
Q 017091 131 HVQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~----~~~~ 204 (377)
+|+++||+|+|+.... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ....
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 3899999999974211 259999999999999999999999999999999999999999999999999853 2345
Q ss_pred HHhcceEEEccCC--cCccccHHHHHhcCCCC-CCCHH----HHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHH
Q 017091 205 WLREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNE----DIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 205 ~~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~-~~~~~----~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
.+++.+|||||+| .+|..|+.||+.++... ....+ ++.++++.+++. ++.++. ...|||||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~~LSgGqkq 151 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKS---------PFELSGGQMR 151 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCC---------cccCCHHHHH
Confidence 6778899999998 67888999999886321 11222 223334444442 222222 3679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~ 355 (377)
|++|||||+.+|++|||||||++||+.++..+.+.|+++++ .|.|||++|||++.+. .||||++|++|++++.|++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~---~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ---SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999864 3789999999999986 4999999999999999999
Q ss_pred HHHhhc
Q 017091 356 AELLHK 361 (377)
Q Consensus 356 ~~l~~~ 361 (377)
++++..
T Consensus 229 ~~~~~~ 234 (288)
T PRK13643 229 SDVFQE 234 (288)
T ss_pred HHHHcC
Confidence 998754
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-51 Score=379.24 Aligned_cols=215 Identities=35% Similarity=0.543 Sum_probs=178.7
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC---HHHHhc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRWLRE 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~---~~~~r~ 208 (377)
++++||+++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4789999999751 36999999999999999999999999999999999999999999999999987665 345677
Q ss_pred ceEEEccCCcCcc-ccHHHHHhcCCCCC----------CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH
Q 017091 209 KIGFVGQEPQLLQ-MDIKSNIMYGCPKD----------VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 274 (377)
Q Consensus 209 ~i~~v~Q~~~l~~-~tv~eni~~~~~~~----------~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq 274 (377)
.++|+||++.+|. .|++||+.++.... .. .+++.++++..++.+..+. ...+|||||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~ 149 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQ---------RADQLSGGQ 149 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCC---------CcccCCHHH
Confidence 8999999998874 79999998642110 00 1122333444444333222 236799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
|||++|||||+.+|++|||||||++||+.++..+.+.|+++.++ .|+|||++|||++.+.. ||++++|++|++++.|
T Consensus 150 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 150 QQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINRE--EGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999998642 37899999999999974 9999999999999999
Q ss_pred ChHHHh
Q 017091 354 NHAELL 359 (377)
Q Consensus 354 ~~~~l~ 359 (377)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 998864
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-51 Score=392.95 Aligned_cols=215 Identities=27% Similarity=0.440 Sum_probs=180.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+|+|++ ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++...+ ...+++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999974 36999999999999999999999999999999999999999999999999987643 3567889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
||+||++.++ ..|++||+.+... ...... ++.++++.+++.+..++. ...||||||||++|||||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~la~aL 153 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAK---------VGELSGGMKRRLTLARAL 153 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCc---------hhhCCHHHHHHHHHHHHH
Confidence 9999999988 5899999975211 111211 222333333333322221 257999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++++.. ||||++|++|++++.|+++++...
T Consensus 154 ~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~---~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA---RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999999863 48899999999999976 999999999999999999998643
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=446.82 Aligned_cols=347 Identities=21% Similarity=0.282 Sum_probs=269.8
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
|++||.++.|+.+.+++++.-++..+...+......+.. +...... ..+.++.+++|.+..+.+|++.+++++.++..
T Consensus 435 Ir~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~-~~~~~~p-~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~ 512 (1560)
T PTZ00243 435 IRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATS-FVNNATP-TLMIAVVFTVYYLLGHELTPEVVFPTIALLGV 512 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 689999999999999998866554444333322222221 1111111 12233456778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----c--c--------cc--c---------------ccc-----
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ----F--L--------SE--G---------------VKL----- 125 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~----~--~--------~~--~---------------~~~----- 125 (377)
+..|+..+...+..+.++.++++||.++++.++... . . .. . ...
T Consensus 513 L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (1560)
T PTZ00243 513 LRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPK 592 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999997653100 0 0 00 0 000
Q ss_pred ----------------------ccccccEEEEEEEEEcCCC-------------------------------------CC
Q 017091 126 ----------------------QRLMGHVQFVNISFHYPSR-------------------------------------PT 146 (377)
Q Consensus 126 ----------------------~~~~~~i~~~~v~~~y~~~-------------------------------------~~ 146 (377)
....+.+.++|++++++.. .+
T Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1560)
T PTZ00243 593 VKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEP 672 (1560)
T ss_pred ccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 0001135677776653210 12
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ ++|||+||+|.+|++|++|
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~e 739 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRG 739 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHH
Confidence 458999999999999999999999999999999999999999999862 4699999999999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHH
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~ 304 (377)
||.++.+ ...++..++++.+++++.++.+|.|+++.++. .+|||||||||+||||++.+|+++|||||||+||+.+
T Consensus 740 nI~~~~~--~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~ 817 (1560)
T PTZ00243 740 NILFFDE--EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHV 817 (1560)
T ss_pred HHHcCCh--hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 9998743 23445667778888999999999999988763 6899999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHH
Q 017091 305 EHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 370 (377)
Q Consensus 305 ~~~i~~~l-~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 370 (377)
.+.+.+.+ ... .+|+|+|+|||+++.+..||+|++|++|++++.|+++++++.. .|.++..
T Consensus 818 ~~~i~~~~~~~~----~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~~-~~~~~~~ 879 (1560)
T PTZ00243 818 GERVVEECFLGA----LAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRTS-LYATLAA 879 (1560)
T ss_pred HHHHHHHHHHHh----hCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhCh-HHHHHHH
Confidence 88887643 322 1478999999999999889999999999999999999998753 4666554
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-51 Score=385.43 Aligned_cols=214 Identities=29% Similarity=0.506 Sum_probs=184.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999632 3699999999999999999999999999999999999999999999999999877767777889
Q ss_pred EEEccCC--cCccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 211 GFVGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 211 ~~v~Q~~--~l~~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
||+||++ .++..|+.||+.++... ... .+++..+++.+++.++.++.| .+||||||||++||||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgG~~qrv~lara 152 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP---------YHLSYGQKKRVAIAGV 152 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh---------hhCCHHHHHHHHHHHH
Confidence 9999998 46788999999875311 111 233455666667666655555 5799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChHHH
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~~l 358 (377)
|+.+|++|||||||++||+.++..+.+.|+++++ .|.|||++|||++.+. .||||++|++|++++.|+++++
T Consensus 153 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN---QGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999999864 3789999999999985 5999999999999999998764
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=377.79 Aligned_cols=215 Identities=34% Similarity=0.497 Sum_probs=179.4
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH---HHHhc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~~r~ 208 (377)
|+++||+++|+.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 2 l~~~~l~~~~~~~--~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPNG--KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCCC--cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 7899999999721 369999999999999999999999999999999999999999999999999876543 23577
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCC-------------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPKD-------------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 274 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq 274 (377)
.++|+||++.+| ..|++||+.++.... ...+++.++++..++.+.++..+ .+|||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~ 150 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA---------DQLSGGQ 150 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHH
Confidence 899999999887 579999998753210 00122333444455544433322 5799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE--DGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999998542 37899999999999865 9999999999999999
Q ss_pred ChHHHh
Q 017091 354 NHAELL 359 (377)
Q Consensus 354 ~~~~l~ 359 (377)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 998863
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-51 Score=377.23 Aligned_cols=215 Identities=32% Similarity=0.502 Sum_probs=180.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+. .++.+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV 76 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce
Confidence 4899999999975 369999999999999999999999999999999999999999999999999865443 25679
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC-C----CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKD-V----KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~-~----~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+|++|++.+| ..|+.||+.++.... . .. +.+.++++..++.++.++.+ .+||||||||++|
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~l 147 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP---------AQLSGGQRQRVAL 147 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHH
Confidence 9999999888 579999998753211 0 11 12334455555544444333 5799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++|||||||++||+.+++.+.+.|.+++++ .|+|||++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE--LHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 99999999999999999999999999999999998642 37899999999998865 9999999999999999999987
Q ss_pred hc
Q 017091 360 HK 361 (377)
Q Consensus 360 ~~ 361 (377)
+.
T Consensus 226 ~~ 227 (239)
T cd03296 226 DH 227 (239)
T ss_pred cC
Confidence 54
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=370.50 Aligned_cols=217 Identities=38% Similarity=0.616 Sum_probs=194.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 48999999999753 24699999999999999999999999999999999999999999999999998877777778899
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p 288 (377)
+|+||++.+++.|++||+.+.. ....+++.++++..++.+++..+|.++.+... ...||||||||++|||||+.+|
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999988889999998642 23456677788888999999999989888765 3689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcC
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~ 354 (377)
+++||||||++||+.+++.+.+.|+++. ++.|||++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAF----KDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999999999999874 3579999999999998899999999999998775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-51 Score=376.42 Aligned_cols=212 Identities=33% Similarity=0.559 Sum_probs=177.8
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC-----CCCCCeEEECCEeCCCCC--HH
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY-----EPSDGQIYIDGFPLTDLD--IR 204 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~-----~p~~G~I~i~g~~i~~~~--~~ 204 (377)
|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+ ..
T Consensus 1 i~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 5789999999753 6999999999999999999999999999999999999 999999999999987655 45
Q ss_pred HHhcceEEEccCCcCccccHHHHHhcCCCCC-C-C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 017091 205 WLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-V-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~-~-~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv 278 (377)
.++++++|+||++.+|..|++||+.++.... . . .+++.++++..++.+..+..+ .+.+||||||||+
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-------~~~~LSgG~~qrv 150 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRL-------HALGLSGGQQQRL 150 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccC-------CcccCCHHHHHHH
Confidence 5677899999999888889999998753211 1 1 123344455555544433321 0267999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHH
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~ 357 (377)
+|||||+.+|++|||||||++||+.++..+.+.|+++++ + +|||++|||++.+.. ||++++|++|++++.|++++
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK---E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh---C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999999853 3 799999999999865 99999999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-51 Score=388.28 Aligned_cols=221 Identities=28% Similarity=0.449 Sum_probs=181.6
Q ss_pred cEEEEEEEEEcCCCC--CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC----CCHH
Q 017091 131 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~----~~~~ 204 (377)
.++++||+|+|++.. ..++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999997421 1369999999999999999999999999999999999999999999999999853 2344
Q ss_pred HHhcceEEEccCC--cCccccHHHHHhcCCCC-CCCHH----HHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHH
Q 017091 205 WLREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNE----DIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 205 ~~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~-~~~~~----~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
.+++.|||+||++ .+|+.|++||+.++... ....+ .+.++++.+++. .+.+. ....|||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---------~~~~LSgGq~q 152 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLAR---------SPFELSGGQMR 152 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhC---------CcccCCHHHHH
Confidence 5677899999997 57788999999876311 11222 223334444442 22222 23679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
||+|||||+.+|++|||||||++||+.++..+.+.|+++.++ .|.|||+||||++.+.. ||||++|++|++++.|++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~--~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~ 230 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE--KGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTP 230 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998642 47899999999999865 999999999999999999
Q ss_pred HHHhhcC
Q 017091 356 AELLHKG 362 (377)
Q Consensus 356 ~~l~~~~ 362 (377)
+++++..
T Consensus 231 ~~~~~~~ 237 (290)
T PRK13634 231 REIFADP 237 (290)
T ss_pred HHHhcCH
Confidence 9886543
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-51 Score=387.21 Aligned_cols=223 Identities=30% Similarity=0.554 Sum_probs=181.3
Q ss_pred cEEEEEEEEEcCCCC--CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC----CHH
Q 017091 131 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~----~~~ 204 (377)
.++++||+|+|+++. .+++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996421 13699999999999999999999999999999999999999999999999998643 234
Q ss_pred HHhcceEEEccCC--cCccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCCccc---ccCCCCCChHHHHHH
Q 017091 205 WLREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYET---LVDDDLLSGGQKQRI 278 (377)
Q Consensus 205 ~~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~LSgGq~QRv 278 (377)
.++++|||+||+| .+|..|+.||+.++... .....+... .+.++++.+ |+.+ .....+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKN-----YAHRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 6778899999997 57778999999886311 112222111 122333332 2221 112368999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChHH
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~~ 357 (377)
+|||||+.+|++|||||||++||+.++..+.+.|++++++ .|.|||+|||+++.+. .||||++|++|++++.|++++
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 232 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD--ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998642 4789999999999986 499999999999999999999
Q ss_pred HhhcC
Q 017091 358 LLHKG 362 (377)
Q Consensus 358 l~~~~ 362 (377)
++...
T Consensus 233 ~~~~~ 237 (286)
T PRK13646 233 LFKDK 237 (286)
T ss_pred HHhCH
Confidence 87653
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-51 Score=399.14 Aligned_cols=217 Identities=28% Similarity=0.448 Sum_probs=186.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCC--CeEEECCEeCCCCCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD--GQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~--G~I~i~g~~i~~~~~~~~r~ 208 (377)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...++ .++
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r 79 (362)
T TIGR03258 5 GIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKR 79 (362)
T ss_pred EEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHC
Confidence 5899999999974 359999999999999999999999999999999999999999 999999999876554 356
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
.||||||++.+| .+||+||+.|+... ... .+++.++++..++.++.++.| .+|||||||||+|||
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~---------~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP---------AQLSGGMQQRIAIAR 150 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh---------hhCCHHHHHHHHHHH
Confidence 799999999999 57999999986421 112 123444555666655555555 679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|++||||||||+||+.++..+.+.|+++.++ ..|.|+|+||||++++.. ||+|++|++|++++.|++++++.+
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~-~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEE-LPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh-CCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999998653 127899999999999865 999999999999999999999875
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 230 p 230 (362)
T TIGR03258 230 P 230 (362)
T ss_pred c
Confidence 3
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=358.64 Aligned_cols=216 Identities=28% Similarity=0.481 Sum_probs=188.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
++++.+++++|++. ..+++||||+++.||++||.|||||||||+||+|++++.|++|.|++||.|.... +...|++|
T Consensus 1 Ml~v~~l~K~y~~~--v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~I 77 (245)
T COG4555 1 MLEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKI 77 (245)
T ss_pred CeeeeehhhhccCH--HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhc
Confidence 37899999999863 3599999999999999999999999999999999999999999999999998764 56678899
Q ss_pred EEEccCCcCc-cccHHHHHhcCC-----CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
|.++-+..++ .+|++|||.|.. .....+.++.+..+..++.+.+++.- .++|.||||||+|||||
T Consensus 78 GVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv---------~~~S~G~kqkV~iARAl 148 (245)
T COG4555 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRV---------GEFSTGMKQKVAIARAL 148 (245)
T ss_pred ceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHH---------hhhchhhHHHHHHHHHH
Confidence 9999777777 799999998631 11222445566677777777776543 46999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+++|++++|||||||||..+...+.+.+.++++ .|++||++||.+++++. ||+|+++++|+++..|+++++...
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~---egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN---EGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc---CCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 999999999999999999999999999999975 48999999999999985 999999999999999999988754
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-51 Score=376.82 Aligned_cols=219 Identities=26% Similarity=0.460 Sum_probs=178.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH-hcce
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 210 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i 210 (377)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999974 369999999999999999999999999999999999999999999999999877665443 5679
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCCC-C----------CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 017091 211 GFVGQEPQLLQ-MDIKSNIMYGCPKD-V----------KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278 (377)
Q Consensus 211 ~~v~Q~~~l~~-~tv~eni~~~~~~~-~----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv 278 (377)
+|+||++.+|. .|++||+.++.... . ...+. ...+.++++.+...........+||||||||+
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 152 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREA-----RERAEELLERVGLADLADRPAGELSYGQQRRL 152 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHH-----HHHHHHHHHHcCccchhhCChhhCCHHHHHHH
Confidence 99999998885 69999998753211 0 01110 11123344443221111112367999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHH
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~ 357 (377)
+|||||+.+|++|||||||++||+.++..+.+.|+++.+ .|+|||++|||++.+.. ||++++|++|++++.|++++
T Consensus 153 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (236)
T cd03219 153 EIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE---RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229 (236)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHH
Confidence 999999999999999999999999999999999999864 37899999999999865 99999999999999999988
Q ss_pred Hhhc
Q 017091 358 LLHK 361 (377)
Q Consensus 358 l~~~ 361 (377)
+...
T Consensus 230 ~~~~ 233 (236)
T cd03219 230 VRNN 233 (236)
T ss_pred hccC
Confidence 8653
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=392.49 Aligned_cols=222 Identities=33% Similarity=0.523 Sum_probs=184.6
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCC--C
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--L 201 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~ 201 (377)
.+.|+++|++++|.+. .+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++.. .
T Consensus 78 ~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred CceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3469999999999643 2469999999999999999999999999999999999986 579999999999863 3
Q ss_pred CHHHHhcceEEEccCCcCccccHHHHHhcCCCC-CCCHHH-----HHHHHHHcCHHHHHHhCCCCcccccC--CCCCChH
Q 017091 202 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVKNED-----IEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGG 273 (377)
Q Consensus 202 ~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgG 273 (377)
+...+|+.++|+||+|.+|++|++||+.|+... ...+++ +..+++.+++.+ ++++.++ +.+||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------~l~~~~~~~~~~LSgG 229 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD-------EVKDDLDKAGNALSGG 229 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcc-------hhhhhhhCCcccCCHH
Confidence 345678899999999999999999999976321 122222 233344444322 1222222 3689999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEE
Q 017091 274 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV 352 (377)
Q Consensus 274 q~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~ 352 (377)
||||++||||++.+|+||||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||||++|++|++++.
T Consensus 230 qkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~----~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 230 QQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELK----KKYSIIIVTHSMAQAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999885 35899999999999977 999999999999999
Q ss_pred cChHHHhhcC
Q 017091 353 GNHAELLHKG 362 (377)
Q Consensus 353 g~~~~l~~~~ 362 (377)
|++++++...
T Consensus 306 g~~~~l~~~~ 315 (329)
T PRK14257 306 GETKTIFIHP 315 (329)
T ss_pred CCHHHHhcCC
Confidence 9999998753
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-51 Score=399.47 Aligned_cols=215 Identities=31% Similarity=0.494 Sum_probs=184.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. ++.|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 5899999999974 3599999999999999999999999999999999999999999999999998765543 4679
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
||+||++.+| ..|++||+.++... ... .+++.++++..++.++.++.| .+|||||||||+|||||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~---------~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTL 148 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 9999999988 57999999886321 111 123445556666655555444 67999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+.+|++|||||||++||+.+++.+.+.|+++.++ .|.|+|+||||++++.. ||+|++|++|++++.|++++++..
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--hCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998643 37899999999998865 999999999999999999999765
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=372.47 Aligned_cols=212 Identities=26% Similarity=0.427 Sum_probs=179.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999974 3699999999999999999999999999999999999999999999999987643 345667899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~~-~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|+||++.++. .|++||+.++... ... .+++.+.++..++.++.+..+ .+||||||||++||||++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qr~~la~al~ 147 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV---------KTYSGGMRRRLEIARSLV 147 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999998874 7999999764210 111 223445566666655554443 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHH
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l 358 (377)
.+|++|||||||++||+.+++.+.+.|.++.++ .|+|||++||+++.+.. ||++++|++|++++.|+++++
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE--FGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999998642 37899999999999875 999999999999999987764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=383.58 Aligned_cols=220 Identities=35% Similarity=0.570 Sum_probs=189.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++++||++.|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999742 24699999999999999999999999999999999999999999999999999877666677889
Q ss_pred EEEccCC--cCccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 211 GFVGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 211 ~~v~Q~~--~l~~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
+|+||++ .++..|+.||+.++... ... .+++..+++.+++.++++..| ..||||||||++||||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LS~G~~qrv~lara 154 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP---------HRLSGGQKQRVAIAGV 154 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 34578999999875311 112 123455666667766666655 5799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|+.+|++|||||||++||+.++..+.+.|+++.++ .|.|||++||+++.+..||+|++|++|++++.|+++++....
T Consensus 155 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~--~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13635 155 LALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ--KGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231 (279)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCH
Confidence 99999999999999999999999999999998642 378999999999998779999999999999999998887643
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-50 Score=382.48 Aligned_cols=220 Identities=29% Similarity=0.481 Sum_probs=187.0
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..++++||+++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus 2 ~~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 79 (277)
T PRK13652 2 HLIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKF 79 (277)
T ss_pred ceEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 358999999999642 359999999999999999999999999999999999999999999999999876666677888
Q ss_pred eEEEccCCc--CccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 210 IGFVGQEPQ--LLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 210 i~~v~Q~~~--l~~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
++|+||++. ++..|+.||+.++.. ..... +.+.++++..++.+++++.+ ..||||||||++|||
T Consensus 80 i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP---------HHLSGGEKKRVAIAG 150 (277)
T ss_pred eEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc---------ccCCHHHHHHHHHHH
Confidence 999999984 567899999986421 11222 23445566666655555544 579999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|++|||||||++||+.+++.+.+.+++++++ .|.|||++||+++.+. .||||++|++|++++.|+++++++.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET--YGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 999999999999999999999999999999998642 3789999999999986 5999999999999999999998764
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 229 ~ 229 (277)
T PRK13652 229 P 229 (277)
T ss_pred H
Confidence 3
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-50 Score=368.45 Aligned_cols=217 Identities=45% Similarity=0.713 Sum_probs=190.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++|+++.|++. .+++++|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 48899999999743 24699999999999999999999999999999999999999999999999998766666667789
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p 288 (377)
+|++|++.+|..|+.||+.++.. ....+.+.+.++..++.+.++..|.++++... ..+||||||||++||||++.+|
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999888899999987632 22344566777888898999988888777654 3589999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEc
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g 353 (377)
++|||||||++||+.++..+.+.|+++++ ++|||++||+++.+..||++++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLG----DKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcC----CCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999998842 37999999999988679999999999998654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=391.45 Aligned_cols=226 Identities=29% Similarity=0.455 Sum_probs=186.4
Q ss_pred cEEEEEEEEEcCCCC----------CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC
Q 017091 131 HVQFVNISFHYPSRP----------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 200 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~----------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~ 200 (377)
.|+++||+++|+... ..++++||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 599999999996311 2469999999999999999999999999999999999999999999999999987
Q ss_pred CCHH---HHhcceEEEccCC--cCc-cccHHHHHhcCCC---CCCCHH----HHHHHHHHcCH-HHHHHhCCCCcccccC
Q 017091 201 LDIR---WLREKIGFVGQEP--QLL-QMDIKSNIMYGCP---KDVKNE----DIEWAAKQAYV-HEFILSLPCGYETLVD 266 (377)
Q Consensus 201 ~~~~---~~r~~i~~v~Q~~--~l~-~~tv~eni~~~~~---~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~~~~~ 266 (377)
.+.. .+|++|+||||++ .++ .+|+.||+.++.. ...+.+ .+.+.++.+++ .+..++.|
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p-------- 159 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP-------- 159 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc--------
Confidence 7643 3567899999998 466 5899999975321 012222 23334445554 22333333
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe
Q 017091 267 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 345 (377)
Q Consensus 267 ~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~ 345 (377)
.+|||||||||+|||||+.+|++||+||||++||+.++..+.+.|++++++ .|.|+|+||||++.+.. ||+|++|+
T Consensus 160 -~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 160 -HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE--MGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 679999999999999999999999999999999999999999999998653 47899999999999976 99999999
Q ss_pred CCEEEEEcChHHHhhcC-HHHHH
Q 017091 346 DGRIIEVGNHAELLHKG-RLYAK 367 (377)
Q Consensus 346 ~G~i~~~g~~~~l~~~~-~~~~~ 367 (377)
+|+|++.|++++++.+. ..|.+
T Consensus 237 ~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 237 LGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CCEEEEEcCHHHHHcCCCCHHHH
Confidence 99999999999998653 34554
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-51 Score=398.95 Aligned_cols=208 Identities=38% Similarity=0.514 Sum_probs=181.6
Q ss_pred EcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH----hcceEEEcc
Q 017091 140 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----REKIGFVGQ 215 (377)
Q Consensus 140 ~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q 215 (377)
.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+ |+.|+||||
T Consensus 2 ~~~~---~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q 78 (363)
T TIGR01186 2 KTGG---KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78 (363)
T ss_pred ccCC---ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence 4553 369999999999999999999999999999999999999999999999999998877666 678999999
Q ss_pred CCcCcc-ccHHHHHhcCCCC-CC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 017091 216 EPQLLQ-MDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 216 ~~~l~~-~tv~eni~~~~~~-~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 289 (377)
++.+|+ +||+||+.++... .. ..+++.++++.+++..++++.| .+|||||||||+|||||+.+|+
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p---------~~LSGGq~QRV~lARAL~~~p~ 149 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP---------DELSGGMQQRVGLARALAAEPD 149 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 999995 7999999875321 11 1234556677777777666666 6799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+||||||||+||+.+++.+++.+.+++++ .|+|||+||||++++.. ||+|++|++|++++.|++++++.+
T Consensus 150 iLLlDEP~saLD~~~r~~l~~~l~~l~~~--~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 150 ILLMDEAFSALDPLIRDSMQDELKKLQAT--LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 99999999999999999999999998643 47899999999998755 999999999999999999999865
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-51 Score=371.79 Aligned_cols=206 Identities=35% Similarity=0.563 Sum_probs=172.8
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999974 369999999999999999999999999999999999999999999999999875432 356799
Q ss_pred EEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|+||++.++ ..|++||+.++... ... .+++.++++..++.++.++.+ .+||||||||++|||||+
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP---------HELSGGQQQRVALARALA 146 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHHHHHHh
Confidence 999999887 57999999864211 111 122344555555555444433 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
.+|++|||||||++||+.++..+.+.|.++.++ .|+|||++|||++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRE--LGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999998642 37899999999999865 9999999999998764
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=373.99 Aligned_cols=218 Identities=32% Similarity=0.499 Sum_probs=182.1
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH---HHh
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 207 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r 207 (377)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997431 12699999999999999999999999999999999999999999999999998765543 346
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 208 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~-~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
+.++|+||++.+|. .|++||+.++.. .... .+.+.++++..++.+..+..+ .+||||||||++||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la 152 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP---------AQLSGGQKQRVGIA 152 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh---------hhCCHHHHHHHHHH
Confidence 78999999999885 799999976421 1111 123344555555554444433 57999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|||+.+|+++||||||++||+.++..+.+.|+++.++ .|+|||++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 153 RALANNPKVLLCDEATSALDPETTQSILALLRDINRE--LGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999998642 37899999999999865 99999999999999999888764
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=386.38 Aligned_cols=217 Identities=31% Similarity=0.528 Sum_probs=184.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++++||+++|+. ++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+...- ..+.+++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999983 13699999999999999999999999999999999999999999999999998654 56778899
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-----CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
||+||++.++ ..|++||+.|... .....+++.+.++.+++.+..+ .....||+|||||++||+||
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~---------~~~~~lS~G~kqrl~ia~aL 151 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKAN---------KKVRTLSGGMKQRLSIALAL 151 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhC---------cchhhcCHHHHHHHHHHHHH
Confidence 9999999987 6899999976321 1112345555666666554221 11257999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+.+|++|||||||+||||.++..+.+.|++++++ .++||+++||.++.+.. ||+|++|++|+++..|+++++...
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~--g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKE--GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC--CCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999999764 23899999999999987 999999999999999999987543
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=398.19 Aligned_cols=217 Identities=27% Similarity=0.473 Sum_probs=185.9
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++ .++.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999974 369999999999999999999999999999999999999999999999999876654 3678
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
||||||++.+| .+||.||+.|+... .... +++.+.++..++.++.++.| .+|||||||||+||||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~---------~~LSgGq~QRVaLARA 163 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP---------HQLSGGQRQRVALARS 163 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHH
Confidence 99999999999 57999999986421 1122 23344455555555544444 6799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|+.+|++||||||||+||+..+..+.+.|+++.++ .|.|+|+||||++++.. ||+|++|++|++++.|++++++.+.
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER--VGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999888653 47899999999999865 9999999999999999999998753
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-50 Score=387.53 Aligned_cols=219 Identities=27% Similarity=0.449 Sum_probs=181.2
Q ss_pred cEEEEEEEEEcCCCC--CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC--------
Q 017091 131 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-------- 200 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~-------- 200 (377)
.|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 489999999997531 1259999999999999999999999999999999999999999999999876531
Q ss_pred ----------------CCHHHHhcceEEEccCC--cCccccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHH-HHHHh
Q 017091 201 ----------------LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVH-EFILS 256 (377)
Q Consensus 201 ----------------~~~~~~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~-~~~~----~~~~~~~~~~~l~-~~~~~ 256 (377)
.....+++.||||||+| .+|..||+|||.++... .... +++.++++.+++. ++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 12345678899999986 56778999999886321 1222 2234445555553 33333
Q ss_pred CCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH
Q 017091 257 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 336 (377)
Q Consensus 257 ~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~ 336 (377)
.| .+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++++ .|.|||+||||++.+.
T Consensus 162 ~~---------~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tiiivtHd~~~~~ 229 (305)
T PRK13651 162 SP---------FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK---QGKTIILVTHDLDNVL 229 (305)
T ss_pred Ch---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeeCHHHHH
Confidence 33 67999999999999999999999999999999999999999999999863 4889999999999875
Q ss_pred -hcCeEEEEeCCEEEEEcChHHHhhc
Q 017091 337 -AVDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 337 -~~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
.||||++|++|++++.|++++++..
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHhcC
Confidence 5999999999999999999998765
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=369.79 Aligned_cols=214 Identities=29% Similarity=0.459 Sum_probs=176.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH-hcce
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 210 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~i 210 (377)
|+++||+++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999974 369999999999999999999999999999999999999999999999999877665443 5679
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCCCCC---HHHHHHHHHHc-CHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 211 GFVGQEPQLLQ-MDIKSNIMYGCPKDVK---NEDIEWAAKQA-YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 211 ~~v~Q~~~l~~-~tv~eni~~~~~~~~~---~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
+|+||++.+|. .|++||+.++...... .+.+...++.. ++.+..+. ...+||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~---------~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQ---------LAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhC---------chhhCCHHHHHHHHHHHHHh
Confidence 99999998885 6999999875321111 11122222222 12222221 12579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
.+|++|||||||++||+.++..+.+.|+++.+ .|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD---EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 99999999999999999999999999998863 37899999999999865 99999999999999999887653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=373.00 Aligned_cols=213 Identities=31% Similarity=0.436 Sum_probs=176.0
Q ss_pred cEEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH---H
Q 017091 131 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~ 206 (377)
.++++||+++|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997421 136999999999999999999999999999999999999999999999999998766533 2
Q ss_pred -hcceEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 207 -REKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 207 -r~~i~~v~Q~~~l~~-~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
++.++|+||++.+|+ .|++||+.++.. .... .+++.++++..++.+..++.+ .+||||||||++
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgG~~qrl~ 155 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP---------SELSGGERQRVA 155 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHH
Confidence 367999999998884 699999976321 0111 122334444444444333322 579999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcC
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~ 354 (377)
||||++.+|++|||||||++||+.++..+.+.|++++++ .|+|||++||+++.+..+|++++|++|++++.++
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL--QGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998642 4789999999999998888999999999998775
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-50 Score=382.70 Aligned_cols=218 Identities=28% Similarity=0.496 Sum_probs=183.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCC--CCCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~--~~~~~~~r~ 208 (377)
.|+++||+++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+++
T Consensus 5 ~l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSDG--THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 48999999999632 36999999999999999999999999999999999999999999999999984 233456778
Q ss_pred ceEEEccCC--cCccccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 209 KIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 209 ~i~~v~Q~~--~l~~~tv~eni~~~~~~-~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
.+||+||++ .+++.|++||+.++... .... +.+..+++..++.++.+..+ .+||||||||++||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LS~G~~qrl~la 153 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPT---------HCLSFGQKKRVAIA 153 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCc---------ccCCHHHHHHHHHH
Confidence 899999998 45688999999874211 1121 23444556666655444333 67999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChHHHhh
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|||+.+|++|||||||++||+.++..+.+.|+++.++ .|+|||++||+++.+. .|||+++|++|++++.|+++++..
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE--LGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998642 3789999999999987 499999999999999999998876
Q ss_pred c
Q 017091 361 K 361 (377)
Q Consensus 361 ~ 361 (377)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-50 Score=369.87 Aligned_cols=212 Identities=26% Similarity=0.508 Sum_probs=177.3
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++||++.|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5789999999752 14699999999999999999999999999999999999999999999999998653 345677899
Q ss_pred EEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|++|++.++ ..|++||+.+... ..... +++.++++..++.+..+..+ .+||||||||++|||||+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~ 149 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRA---------RTLSGGMKRKLSLAIALI 149 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChh---------hhCCHHHHHHHHHHHHHh
Confidence 999999888 6899999976421 11111 22334455555544443322 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHH
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l 358 (377)
.+|++|||||||++||+.+++.+.+.|+++++ ++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 150 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEVRK----GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc----CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999998852 4799999999999865 999999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-50 Score=391.79 Aligned_cols=215 Identities=27% Similarity=0.457 Sum_probs=179.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ...++.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999975 36999999999999999999999999999999999999999999999999987543 4567889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
||+||++.++ ..|+.||+.+... ...... .+.++++.+++.+..++ ...+||||||||++|||||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~---------~~~~LS~G~kqrv~lA~aL 187 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADA---------RVSDLSGGMKRRLTLARAL 187 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCC---------ChhhCCHHHHHHHHHHHHH
Confidence 9999999887 6899999975211 111111 12222333333222221 1257999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||+++.+.. ||+|++|++|+++..|+++++...
T Consensus 188 ~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~---~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLA---RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999864 48899999999999975 999999999999999999998653
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-50 Score=371.89 Aligned_cols=215 Identities=33% Similarity=0.506 Sum_probs=178.5
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEE
Confidence 789999999974 3699999999999999999999999999999999999999999999999998765543 345799
Q ss_pred EEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|+||++.++ ..|++||+.++.. ..... +.+.+.++..++.+.++. ...+||||||||++|||||+
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~G~~qrl~laral~ 148 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADD---------KVRELNGGHRRRVEIARALL 148 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcC---------ChhhCCHHHHHHHHHHHHHh
Confidence 999999875 7899999976421 11111 122233333333332222 12579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
.+|+++||||||++||+.+++.+.+.|+++.++ .|.|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 149 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 149 HRPALLLLDEPTVGLDPASRAAIVAHVRALCRD--QGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999999999998642 47899999999999877999999999999999999988765
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-50 Score=366.70 Aligned_cols=205 Identities=26% Similarity=0.439 Sum_probs=176.9
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 478999999964 3699999999999999999999999999999999999999999999999987653 44567899
Q ss_pred EEccCCcCc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 289 (377)
|+||++.++ ..|++||+.++.. .....+++.++++..++.+..++.+ ..|||||||||+||||++.+|+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKV---------KGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhH---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 999999887 6899999976421 1223445666777777766655544 5799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
+|||||||++||+.+++.+.+.|+++++ .|+|+|++|||++.+.. ||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRD---QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998864 37899999999999865 9999999999998764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-50 Score=385.85 Aligned_cols=215 Identities=29% Similarity=0.456 Sum_probs=179.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....++++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999974 3699999999999999999999999999999999999999999999999998653 34567889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
||+||++.++ ..|++||+.+... ...... .+.++++..++.+..+.. ...||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~---------~~~LSgG~~qrv~la~al 150 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVR---------VALLSGGMKRRLTLARAL 150 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCc---------hhhCCHHHHHHHHHHHHH
Confidence 9999999887 5899999974211 111221 122333444443333222 257999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|||++||+++.+.. ||+|++|++|+++..|+++++...
T Consensus 151 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 151 INDPQLLILDEPTTGLDPHARHLIWERLRSLLA---RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999864 47899999999999975 999999999999999999998653
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=366.34 Aligned_cols=201 Identities=33% Similarity=0.545 Sum_probs=170.9
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 212 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 212 (377)
+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999752 369999999999999999999999999999999999999999999999998753 345678999
Q ss_pred EccCCc--CccccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 017091 213 VGQEPQ--LLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 213 v~Q~~~--l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 289 (377)
+||++. ++..|++||+.++... ....+++.++++..++.++.++.| ..||||||||++|||||+.+|+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP---------LSLSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc---------hhCCHHHHHHHHHHHHHHhCCC
Confidence 999973 5678999999875321 112234556666666665555444 5799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEE
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 350 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~ 350 (377)
+|||||||++||+.+++.+.+.|+++++ .|+|+|++||+++.+.. ||++++|++|+++
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 147 LLIFDEPTSGLDYKNMERVGELIRELAA---QGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999863 37899999999999875 9999999999974
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-50 Score=378.92 Aligned_cols=221 Identities=34% Similarity=0.532 Sum_probs=187.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743224599999999999999999999999999999999999999999999999998766666778889
Q ss_pred EEEccCCc--CccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 211 GFVGQEPQ--LLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 211 ~~v~Q~~~--l~~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
+|+||++. ++..|+.||+.++.. ..... +.+..+++.+++.++.+..+ ..||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lAra 154 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP---------ARLSGGQKQRVAVAGI 154 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 99999984 457899999986521 11122 22345556666665555443 5799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|+.+|++|||||||++||+.+++.+.+.|+++.++ .|.|||++||+++.+..||+|++|++|++++.|++++++...
T Consensus 155 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 155 IALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK--YQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 99999999999999999999999999999998642 378999999999998779999999999999999999987643
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-50 Score=370.09 Aligned_cols=215 Identities=26% Similarity=0.476 Sum_probs=178.0
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hhcce
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREKI 210 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~i 210 (377)
|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 478999999974 36999999999999999999999999999999999999999999999999987665544 34679
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLLQ-MDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~~-~tv~eni~~~~~~-~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
+|+||++.+|. .|++||+.++... .... +.+...++..++.+..+.. ..+||||||||++|||||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~la~al 148 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSK---------ASSLSGGERRRVEIARAL 148 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC---------hhhCCHHHHHHHHHHHHH
Confidence 99999998885 6999999864211 1111 1222333333433333222 267999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+.+|++|||||||++||+.+++.+.+.|+++.+ .++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~---~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 223 (232)
T cd03218 149 ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD---RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223 (232)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhcC
Confidence 999999999999999999999999999998864 37899999999998865 999999999999999999888653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-50 Score=374.03 Aligned_cols=217 Identities=31% Similarity=0.511 Sum_probs=179.8
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
++++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999752 35999999999999999999999999999999999999999999999999987766666778899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHH--HHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHE--FILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~-~~~~----~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
|+||++.+| ..|++||+.++... .... +.+.++++..++.. +.++ ...+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---------~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADR---------YPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhc---------ChhhCCHHHHHHHHHHHH
Confidence 999999888 57999999764211 1111 12222333333321 2221 236799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
|+.+|++|||||||++||+.++..+.+.|+++.++ .|+|||++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQE--LGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999999998642 37899999999998865 999999999999999999988654
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-50 Score=378.13 Aligned_cols=226 Identities=22% Similarity=0.361 Sum_probs=184.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH---HHh
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r 207 (377)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 5999999999964 3699999999999999999999999999999999999999999999999998765432 346
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCCC--CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 208 EKIGFVGQEPQLLQ-MDIKSNIMYGCPK--DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+.++|+||++.+|. .|+.||+.++... .... ..+...++..++.+..+.. ..+||||||||++|
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LSgGq~qrv~l 154 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM---------PSELSGGMARRAAL 154 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCC---------hhhCCHHHHHHHHH
Confidence 77999999998885 6999999764211 1111 1222334444444333332 26799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|+|||++|||++.+.. ||++++|++|++++.|++++++
T Consensus 155 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 155 ARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA--LGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999998642 37899999999999876 9999999999999999999987
Q ss_pred hcC-HHHHHHHH
Q 017091 360 HKG-RLYAKLVK 370 (377)
Q Consensus 360 ~~~-~~~~~~~~ 370 (377)
+.. ..+..++.
T Consensus 233 ~~~~~~~~~~~~ 244 (269)
T PRK11831 233 ANPDPRVRQFLD 244 (269)
T ss_pred cCCcHHHHHHHH
Confidence 643 33444443
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=369.92 Aligned_cols=216 Identities=26% Similarity=0.450 Sum_probs=178.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~ 209 (377)
+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 5899999999974 36999999999999999999999999999999999999999999999999987766543 5678
Q ss_pred eEEEccCCcCcc-ccHHHHHhcCCCCCCC---HHHHHHHHHHc-CHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVK---NEDIEWAAKQA-YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 210 i~~v~Q~~~l~~-~tv~eni~~~~~~~~~---~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
++|++|++.+|. .|+.||+.++...... .+.+.++++.. ++.+..+. ....||||||||++|||||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~---------~~~~LS~G~~qrl~la~al 152 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQ---------RAGTMSGGEQQMLAIGRAL 152 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhC---------chhhCCHHHHHHHHHHHHH
Confidence 999999998885 6999999875321111 11122222222 12222111 1257999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+.+|++|||||||++||+.+++.+.+.|+++.+ +|+|||++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE---QGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999864 37899999999998765 999999999999999999998754
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-50 Score=381.44 Aligned_cols=219 Identities=28% Similarity=0.481 Sum_probs=179.5
Q ss_pred cEEEEEEEEEcCCCC--CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC----CHH
Q 017091 131 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~----~~~ 204 (377)
.|+++||+++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 489999999997421 13699999999999999999999999999999999999999999999999998642 234
Q ss_pred HHhcceEEEccCC--cCccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHH
Q 017091 205 WLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 205 ~~r~~i~~v~Q~~--~l~~~tv~eni~~~~~-~~~~~~----~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
..++.|+|+||++ .+|..|+.||+.++.. .....+ .+.++++.+++. ++.++. ..+|||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~~LSgGq~q 152 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKS---------PFELSGGQMR 152 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCC---------cccCCHHHHH
Confidence 5667899999998 4667899999986421 111221 223333334432 222222 3679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
|++|||||+.+|++|||||||++||+.++..+.+.|+++++ .|.|||++|||++.+.. ||+|++|++|++++.|++
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~---~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK---AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999853 48899999999999865 999999999999999999
Q ss_pred HHHhhc
Q 017091 356 AELLHK 361 (377)
Q Consensus 356 ~~l~~~ 361 (377)
+++...
T Consensus 230 ~~~~~~ 235 (287)
T PRK13641 230 KEIFSD 235 (287)
T ss_pred HHHhcC
Confidence 988654
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-50 Score=376.75 Aligned_cols=224 Identities=30% Similarity=0.446 Sum_probs=188.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 4899999999974 3699999999999999999999999999999999999999999999999998776666777889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC---------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+|+||++.++ ..|+.||+.++.... ...+++..+++.+++.++++..+ .+||||||||++|
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~l 158 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV---------DSLSGGERQRAWI 158 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc---------ccCCHHHHHHHHH
Confidence 9999998766 579999998753110 01223455566666665555444 5799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++|||||||++||+.+++.+.+.|.++.+. .|.|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~--~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 159 AMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE--RGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999998642 37899999999999865 9999999999999999998886
Q ss_pred hcCHHHHHHH
Q 017091 360 HKGRLYAKLV 369 (377)
Q Consensus 360 ~~~~~~~~~~ 369 (377)
.. ..+..++
T Consensus 237 ~~-~~~~~~~ 245 (265)
T PRK10575 237 RG-ETLEQIY 245 (265)
T ss_pred CH-HHHHHHh
Confidence 53 2344444
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-50 Score=377.56 Aligned_cols=220 Identities=34% Similarity=0.598 Sum_probs=186.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+++++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999632 24699999999999999999999999999999999999999999999999998766666778889
Q ss_pred EEEccCCc--CccccHHHHHhcCCCC-CCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 211 GFVGQEPQ--LLQMDIKSNIMYGCPK-DVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 211 ~~v~Q~~~--l~~~tv~eni~~~~~~-~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
+|+||++. ++..|++||+.++... ....+ .+.+.++..++.++++..+ .+||||||||++||||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~lara 156 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP---------QNLSGGQKQRVAIASV 156 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 99999983 4478999999875211 11222 2344556666666555544 6799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|+.+|++|||||||++||+.+++.+.+.|+++.++ .++|+|++||+++.+..||++++|++|++++.|+++++....
T Consensus 157 l~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 157 LALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT--RKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999999998642 258999999999988779999999999999999998887643
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-50 Score=369.38 Aligned_cols=207 Identities=38% Similarity=0.523 Sum_probs=170.1
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH----H
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW----L 206 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~----~ 206 (377)
|+++||+++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999997421 136999999999999999999999999999999999999999999999999987655322 3
Q ss_pred hcceEEEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 207 REKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 207 r~~i~~v~Q~~~l~~-~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
++.++|+||++.+|. .|++||+.++... ... .+.+.++++..++.+..++.+ .+||||||||++|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~l 151 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP---------SELSGGQQQRVAI 151 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcCh---------hhcCHHHHHHHHH
Confidence 567999999998885 6999999875321 111 122334444444444333333 5799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEE
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 349 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i 349 (377)
||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|+|||++||+++.+..||++++|++|++
T Consensus 152 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 152 ARALANDPKIILADEPTGNLDSETGKEVMELLRELNKE--AGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999999998642 37899999999998878999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-50 Score=373.98 Aligned_cols=214 Identities=33% Similarity=0.534 Sum_probs=179.4
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC-----CCeEEECCEeCCCC--CHH
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTDL--DIR 204 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-----~G~I~i~g~~i~~~--~~~ 204 (377)
|+++||+++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... +..
T Consensus 2 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGEK---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECCe---eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 7899999999753 5999999999999999999999999999999999999998 99999999998653 244
Q ss_pred HHhcceEEEccCCcCccccHHHHHhcCCCC-C-CCH----HHHHHHHHHcCHH----HHHHhCCCCcccccCCCCCChHH
Q 017091 205 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VKN----EDIEWAAKQAYVH----EFILSLPCGYETLVDDDLLSGGQ 274 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~-~~~----~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~LSgGq 274 (377)
.+++.++|+||++.+|..|++||+.++... . ... +.+..+++..++. +.++.. ..+|||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---------~~~LSgG~ 149 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDS---------ALGLSGGQ 149 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCC---------cccCCHHH
Confidence 567789999999988889999999864211 1 111 2233344444443 222222 26799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
|||++|||||+.+|+++||||||++||+.++..+.+.|+++++ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 225 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK----KYTIVIVTHNMQQAARISDRTAFFYDGELVEYG 225 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999853 4799999999999865 9999999999999999
Q ss_pred ChHHHhhc
Q 017091 354 NHAELLHK 361 (377)
Q Consensus 354 ~~~~l~~~ 361 (377)
++++++..
T Consensus 226 ~~~~~~~~ 233 (247)
T TIGR00972 226 PTEQIFTN 233 (247)
T ss_pred CHHHHHhC
Confidence 99998754
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=384.93 Aligned_cols=227 Identities=31% Similarity=0.477 Sum_probs=186.0
Q ss_pred cEEEEEEEEEcCCCC-------CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH
Q 017091 131 HVQFVNISFHYPSRP-------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~-------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~ 203 (377)
.|+++||++.|+... ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 589999999996311 2469999999999999999999999999999999999999999999999999987764
Q ss_pred H---HHhcceEEEccCCc--Cc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCC
Q 017091 204 R---WLREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLL 270 (377)
Q Consensus 204 ~---~~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~--~~~~----~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~L 270 (377)
. .+|++|+||||++. ++ ..|+.+|+..... .... .+++.++++.+++. +.++..| .+|
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p---------~~L 155 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYP---------HMF 155 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCC---------ccC
Confidence 3 45678999999983 55 4799998864211 0111 12344455555553 2333333 689
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 271 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 271 SgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
||||||||+|||||+.+|++||+||||++||+.++..+++.|.+++++ .|.|+|+||||++.+.. ||+|++|++|+|
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~--~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE--LGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998753 48899999999999975 999999999999
Q ss_pred EEEcChHHHhhcC-HHHHHH
Q 017091 350 IEVGNHAELLHKG-RLYAKL 368 (377)
Q Consensus 350 ~~~g~~~~l~~~~-~~~~~~ 368 (377)
++.|++++++++. ..|.+.
T Consensus 234 ve~g~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 234 VEKGTKEQIFNNPRHPYTQA 253 (327)
T ss_pred EEECCHHHHhcCCCCHHHHH
Confidence 9999999998752 345543
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-50 Score=378.00 Aligned_cols=216 Identities=29% Similarity=0.538 Sum_probs=183.0
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC-HHHHhcce
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREKI 210 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-~~~~r~~i 210 (377)
++++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 7899999999642 35999999999999999999999999999999999999999999999999987654 34567789
Q ss_pred EEEccCCc--CccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 211 GFVGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 211 ~~v~Q~~~--l~~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
+|+||++. ++..|+.||+.++... ... .+.+..+++..++.++.+..+ ..||||||||++||||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~lara 150 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSP---------KTLSGGQGQCVALAGI 150 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCc---------ccCCHHHHHHHHHHHH
Confidence 99999985 4578999999875211 111 223344455556555544433 6799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
|+.+|++|||||||++||+.++..+.+.|+++++ .|.|||++||+++.+..||+|++|++|++++.|+++++...
T Consensus 151 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~---~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 151 LTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE---KGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999999863 48899999999999877999999999999999999887654
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-50 Score=366.58 Aligned_cols=209 Identities=27% Similarity=0.480 Sum_probs=175.4
Q ss_pred EEEEEEEEEcCCCCC-CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 132 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 132 i~~~~v~~~y~~~~~-~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
|+++||+++|++... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+++++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999975311 169999999999999999999999999999999999999999999999999865 345567889
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~~-~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
+|+||++.+|. .|++||+.+... .... .+++.++++..++.+.+++.+ .+||||||||++||||+
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral 151 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV---------GGFSTGMRQKVAIARAL 151 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhh---------hhcCHHHHHHHHHHHHH
Confidence 99999998885 699999975321 1111 223444566666655554433 57999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
+.+|++|||||||++||+.+++.+.+.|+++++ +|+|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRA---LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999999853 37899999999999865 9999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=354.43 Aligned_cols=225 Identities=28% Similarity=0.454 Sum_probs=188.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~ 209 (377)
+++++||+..|+. .++|++|||++++||+++|+||||+|||||+|+|+|+.+|.+|+|.++|+|++..++.+ .|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 5899999999985 37999999999999999999999999999999999999999999999999999988765 4677
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccc--CCCCCChHHHHHHHHHHHHcC
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV--DDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~LSgGq~QRv~iAral~~ 286 (377)
|+||||...+| .+||+||+..|......++. ....+++..+-+|. +.... ...+|||||||.++|||||+.
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~-----~~~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEA-----QERDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccc-----ccccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 99999999999 78999999987422111011 01113334444452 21111 136899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcCHHH
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRLY 365 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~~~~ 365 (377)
+|++|+|||||.||-|.-.++|.+.|++++++ .|.||++|.++...+.. +||.++|++|+|+..|+.+++.++...-
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~--~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~v~ 231 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE--GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVR 231 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHHc--CCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHHHH
Confidence 99999999999999999999999999999853 47899999999998865 9999999999999999999998876543
Q ss_pred H
Q 017091 366 A 366 (377)
Q Consensus 366 ~ 366 (377)
+
T Consensus 232 ~ 232 (237)
T COG0410 232 E 232 (237)
T ss_pred H
Confidence 3
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=372.53 Aligned_cols=216 Identities=33% Similarity=0.483 Sum_probs=178.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC--------
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-------- 202 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-------- 202 (377)
+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 5899999999974 36999999999999999999999999999999999999999999999999886432
Q ss_pred HHHHhcceEEEccCCcCc-cccHHHHHhcCCC--CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 017091 203 IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP--KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 275 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~--~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~ 275 (377)
...+++.++|+||++.+| ..|+.||+.++.. .....+ .+.+.++..++.+..+. ...+||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LS~Gq~ 150 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETS---------YPRRLSGGQQ 150 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhC---------ChhhCChHHH
Confidence 234577899999999888 5799999976411 111111 12222333333222221 2367999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ .|.|||++||+++.+.. ||++++|++|++++.|+
T Consensus 151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ---EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGP 227 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999998863 37899999999999865 99999999999999999
Q ss_pred hHHHhhc
Q 017091 355 HAELLHK 361 (377)
Q Consensus 355 ~~~l~~~ 361 (377)
++++.+.
T Consensus 228 ~~~~~~~ 234 (250)
T PRK11264 228 AKALFAD 234 (250)
T ss_pred HHHHhcC
Confidence 9998754
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-50 Score=367.29 Aligned_cols=208 Identities=32% Similarity=0.500 Sum_probs=171.4
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH---Hh
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 207 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~r 207 (377)
|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... ++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 136999999999999999999999999999999999999999999999999987665433 23
Q ss_pred -cceEEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 208 -EKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 208 -~~i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+.++|+||++.+| ..|++||+.++.. .... .+.+.+.++..++.+..++.+ ..||||||||++|
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~l 152 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP---------SELSGGERQRVAI 152 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHH
Confidence 6799999999888 5799999976321 1111 112333444444444433333 6799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEE
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 350 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~ 350 (377)
||||+.+|++|||||||++||+.++..+.+.|+++.++ .++|||++|||++.+..||+|++|++|+++
T Consensus 153 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 153 ARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE--LNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999988642 378999999999998779999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-50 Score=371.44 Aligned_cols=215 Identities=34% Similarity=0.548 Sum_probs=181.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC--HHHHhcc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWLREK 209 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~--~~~~r~~ 209 (377)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999974 36999999999999999999999999999999999999999999999999987532 3456778
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCC--CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~--~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
++|+||++.++ ..|++||+.++.. ..... +.+.++++..++.+.++..+ ..||||||||++|||
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~la~ 149 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP---------SELSGGQQQRVAIAR 149 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh---------hhcCHHHHHHHHHHH
Confidence 99999999887 5799999987521 11111 22334444555544444333 579999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|+++||||||++||+.++..+.+.|+++++ +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 150 ALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE---EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999999998863 37899999999999965 999999999999999999988764
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=385.78 Aligned_cols=227 Identities=24% Similarity=0.370 Sum_probs=182.5
Q ss_pred cEEEEEEEEEcCCCCC-CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC----CCCCeEEECCEeCCCCCHHH
Q 017091 131 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQIYIDGFPLTDLDIRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~-~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~----p~~G~I~i~g~~i~~~~~~~ 205 (377)
.|+++||++.|+.... ..+|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++..++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999975321 359999999999999999999999999999999999997 48999999999998777554
Q ss_pred Hh----cceEEEccCCc--Cc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHH---HHHHhCCCCcccccCCCC
Q 017091 206 LR----EKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVH---EFILSLPCGYETLVDDDL 269 (377)
Q Consensus 206 ~r----~~i~~v~Q~~~--l~-~~tv~eni~~~~~--~~~~----~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~ 269 (377)
++ +.|+||||++. ++ ..|+.+++..... .... .+.+.++++.+++. ..++..| .+
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p---------~~ 153 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYP---------HQ 153 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCc---------hh
Confidence 33 46999999984 44 4677766643210 0111 22344455555553 2233333 68
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCE
Q 017091 270 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 348 (377)
Q Consensus 270 LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~ 348 (377)
|||||||||+|||||+.+|++||+||||++||+.++..+++.|++++++ .|.|+|+||||++.+.. ||||++|++|+
T Consensus 154 LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~--~g~til~iTHdl~~~~~~adri~vm~~G~ 231 (326)
T PRK11022 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK--ENMALVLITHDLALVAEAAHKIIVMYAGQ 231 (326)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999753 48899999999999865 99999999999
Q ss_pred EEEEcChHHHhhc-CHHHHHH
Q 017091 349 IIEVGNHAELLHK-GRLYAKL 368 (377)
Q Consensus 349 i~~~g~~~~l~~~-~~~~~~~ 368 (377)
|++.|++++++++ ...|.+.
T Consensus 232 ive~g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 232 VVETGKAHDIFRAPRHPYTQA 252 (326)
T ss_pred EEEECCHHHHhhCCCChHHHH
Confidence 9999999999865 3345443
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-50 Score=365.97 Aligned_cols=206 Identities=33% Similarity=0.541 Sum_probs=174.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGNV---TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECCe---eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 4789999999753 699999999999999999999999999999999999999999999999998654432 46799
Q ss_pred EEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|+||++.+| ..|++||+.++... ... .+++.++++..++.++.+..+ .+||||||||++|||||+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qr~~laral~ 146 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP---------KQLSGGQRQRVALGRAIV 146 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 999999888 57999999864211 111 123344556666665555444 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
.+|+++||||||++||+.+++.+.+.|+++.++ .|+|||++||+++.+.. ||++++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR--LGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999998642 37899999999999875 9999999999998865
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=376.99 Aligned_cols=216 Identities=28% Similarity=0.422 Sum_probs=179.5
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC--CCHHHHhcc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREK 209 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--~~~~~~r~~ 209 (377)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999974 369999999999999999999999999999999999999999999999999842 233456778
Q ss_pred eEEEccCCc--CccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 210 IGFVGQEPQ--LLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 210 i~~v~Q~~~--l~~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
|+|+||++. ++..|+.+|+.++.. ..... +.+..+++..++.++.+.. ..+||||||||++|||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~~qrl~lar 149 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQP---------IQCLSHGQKKRVAIAG 149 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCC---------chhCCHHHHHHHHHHH
Confidence 999999985 456789999976421 11112 1233445555554443332 2579999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|++|||||||++||+.++..+.+.|+++.+ .|.|||++|||++.+.. ||++++|++|++++.|+++++...
T Consensus 150 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 150 ALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA---QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999863 37899999999999865 999999999999999999988764
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 227 ~ 227 (271)
T PRK13638 227 T 227 (271)
T ss_pred h
Confidence 3
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=378.43 Aligned_cols=221 Identities=30% Similarity=0.527 Sum_probs=187.9
Q ss_pred cEEEEEEEEEcCCCC---CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC-HHHH
Q 017091 131 HVQFVNISFHYPSRP---TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWL 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~---~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-~~~~ 206 (377)
+|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 589999999997421 246999999999999999999999999999999999999999999999999986543 3456
Q ss_pred hcceEEEccCCc--CccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 207 REKIGFVGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 207 r~~i~~v~Q~~~--l~~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
++.+||+||++. ++..|+.+|+.++... ... .+.+..+++.+++.++.++.| .+||||||||++
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LS~G~~qrv~ 154 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP---------HLLSGGQKQRVA 154 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHH
Confidence 788999999984 5667899999875311 111 233455666677776666655 679999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHh
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
|||||+.+|+++||||||++||+.++..+.+.|+++.++ .|.|||++||+++.+..||++++|++|++++.|+++++.
T Consensus 155 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 155 IAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK--YGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998642 488999999999998779999999999999999999987
Q ss_pred hcC
Q 017091 360 HKG 362 (377)
Q Consensus 360 ~~~ 362 (377)
...
T Consensus 233 ~~~ 235 (280)
T PRK13633 233 KEV 235 (280)
T ss_pred cCh
Confidence 653
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-50 Score=378.74 Aligned_cols=215 Identities=35% Similarity=0.509 Sum_probs=182.3
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH----hc
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----RE 208 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~----r~ 208 (377)
.++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 57799999975 369999999999999999999999999999999999999999999999999876554332 45
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
+++|+||++.+| ..|+.||+.++... ... .+++.+.++..++.++++..| .+||||||||++|||
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrv~lAr 173 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP---------DELSGGMQQRVGLAR 173 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc---------ccCCHHHHHHHHHHH
Confidence 799999999888 57999999864210 111 223445566666666665555 579999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|++|||||||++||+.+++.+.+.|.++.++ .|+|||++||+++.+.. ||++++|++|++++.|+++++++.
T Consensus 174 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE--LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998642 37899999999999865 999999999999999999999764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-50 Score=393.83 Aligned_cols=202 Identities=38% Similarity=0.579 Sum_probs=173.4
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH----hcceEEEccCCcCc-ccc
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----REKIGFVGQEPQLL-QMD 223 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~l~-~~t 223 (377)
+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+ +++++|+||++.+| ..|
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 8999999999999999999999999999999999999999999999999987665432 45799999999988 579
Q ss_pred HHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCC
Q 017091 224 IKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS 298 (377)
Q Consensus 224 v~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts 298 (377)
++||+.++... ... .+++.++++.+++.++.++.| .+|||||||||+|||||+.+|++|||||||+
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~---------~~LSgGq~QRv~LArAL~~~P~iLLLDEPts 193 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP---------DELSGGMRQRVGLARALAINPDILLMDEAFS 193 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc---------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 99999875311 111 223444566666655555554 6799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 299 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 299 ~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+||+.+++.+.+.|.+++++ .|+|||++|||++++.. ||+|++|++|++++.|++++++..
T Consensus 194 ~LD~~~r~~l~~~L~~l~~~--~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 194 ALDPLIRTEMQDELVKLQAK--HQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred cCCHHHHHHHHHHHHHHHHH--CCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999998642 47899999999999865 999999999999999999998765
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=373.31 Aligned_cols=224 Identities=25% Similarity=0.447 Sum_probs=188.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 4899999999974 3699999999999999999999999999999999999999999999999998766666677789
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCC-----C----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPK-----D----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~-----~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+|+||++.++ ..|+.||+.++... . ...+.+..+++..++.++.+..+ ..||||||||++|
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~l 149 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL---------TDLSGGQRQRAFL 149 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc---------ccCCHHHHHHHHH
Confidence 9999999887 46999999875210 0 01223444555556655544433 6799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
|||++.+|++|||||||++||+.+++.+.+.|+++.+ .|+|+|++||+++.+.. ||++++|++|+++..|+++++.
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~---~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT---QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 9999999999999999999999999999999998853 37899999999999865 9999999999999999999886
Q ss_pred hcCHHHHHHHH
Q 017091 360 HKGRLYAKLVK 370 (377)
Q Consensus 360 ~~~~~~~~~~~ 370 (377)
.. ..+.+.+.
T Consensus 227 ~~-~~~~~~~~ 236 (255)
T PRK11231 227 TP-GLLRTVFD 236 (255)
T ss_pred CH-HHHHHHhC
Confidence 53 34555553
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=372.35 Aligned_cols=219 Identities=32% Similarity=0.476 Sum_probs=179.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCC--CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~~~ 203 (377)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5999999999974 3599999999999999999999999999999999999997 49999999998753 233
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-C-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~-~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.|+|+||++.+|..|++||+.++... . .. .+.+..+++.+++.+.+. ..+++ ...+||||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~--~~~~LSgG~~qr 158 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---DKLNT--NALSLSGGQQQR 158 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---HHHhC--CcccCCHHHHHH
Confidence 4567889999999988889999999875311 1 11 122333444444321111 01111 236799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.++..+.+.|++++ ++.|+|++||+++.+.. |||+++|++|++++.|+++
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK----ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999984 25799999999999865 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++.++
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 98754
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-51 Score=366.32 Aligned_cols=229 Identities=27% Similarity=0.422 Sum_probs=190.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH-hcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~ 209 (377)
.+++++++++|++- .+++||||++++||+++||||||||||||+++|+|+|+|++|+|.++|+++..+++.++ |..
T Consensus 4 lL~v~~l~k~FGGl---~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 4 LLEVRGLSKRFGGL---TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred eeeeccceeecCCE---EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence 47899999999863 69999999999999999999999999999999999999999999999999999987664 566
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCC----------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPKD----------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv 278 (377)
|+.-||.+.+| .+||.||+..+.... ....+..++.+ .+.++++.+...........+||+|||+|+
T Consensus 81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e--~A~~~Le~vgL~~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE--RARELLEFVGLGELADRPAGNLSYGQQRRL 158 (250)
T ss_pred ceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHH--HHHHHHHHcCCchhhcchhhcCChhHhHHH
Confidence 99999999999 689999998752100 00011112222 233445554433333333468999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHH
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~ 357 (377)
.|||||+.+|++||||||.+||.+....++.+.|+++++. .|.||++|.|||+.+.. ||||+||+.|+++++|+|++
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~--~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR--GGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc--CCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHH
Confidence 9999999999999999999999999999999999999753 47999999999999975 99999999999999999999
Q ss_pred HhhcCHHHH
Q 017091 358 LLHKGRLYA 366 (377)
Q Consensus 358 l~~~~~~~~ 366 (377)
+.++....+
T Consensus 237 V~~dp~Vie 245 (250)
T COG0411 237 VRNNPRVIE 245 (250)
T ss_pred HhcCHHhHH
Confidence 998765543
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-50 Score=367.48 Aligned_cols=208 Identities=34% Similarity=0.524 Sum_probs=174.3
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. .++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999997521 1369999999999999999999999999999999999999999999999998753 35679
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~~-~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
+|+||++.+|. .|++||+.++.. .... .+.+.+.++..++.+++++.+ ..||||||||++|||||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~la~al 146 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP---------HQLSGGMRQRVALARAL 146 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc---------ccCCHHHHHHHHHHHHH
Confidence 99999998885 799999986421 1111 223445556666655555444 57999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe--CCEEEEEcCh
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID--DGRIIEVGNH 355 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~--~G~i~~~g~~ 355 (377)
+.+|++|||||||++||+.++..+.+.|+++.++ .|+|||++||+++.+.. ||++++|+ +|++++.++.
T Consensus 147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 147 AVDPDVLLLDEPFSALDALTREQLQEELLDIWRE--TGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999988542 37899999999998865 99999999 7999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=372.10 Aligned_cols=217 Identities=31% Similarity=0.450 Sum_probs=184.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 3899999999975 3699999999999999999999999999999999999999999999999998776666667789
Q ss_pred EEEccCCcC-ccccHHHHHhcCCCCC-C----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQL-LQMDIKSNIMYGCPKD-V----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l-~~~tv~eni~~~~~~~-~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
+|+||++.+ +..|++||+.++.... . ..+.+.++++..++.++.+..+ .+||||||||++|||||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGe~qrv~la~al 149 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDY---------PQLSGGEQQRVQLARVL 149 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHH
Confidence 999999987 4789999998753211 1 1123344555555555444433 67999999999999999
Q ss_pred c------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHH
Q 017091 285 L------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 285 ~------~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~ 357 (377)
+ .+|++|||||||++||+.++..+.+.|+++.+. .|.|||++||+++.+.. ||+|++|++|++++.|++++
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE--RGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 9 599999999999999999999999999998632 47899999999999875 99999999999999999988
Q ss_pred Hhhc
Q 017091 358 LLHK 361 (377)
Q Consensus 358 l~~~ 361 (377)
+...
T Consensus 228 ~~~~ 231 (258)
T PRK13548 228 VLTP 231 (258)
T ss_pred HhCh
Confidence 8653
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=358.30 Aligned_cols=228 Identities=25% Similarity=0.454 Sum_probs=185.6
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hh
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LR 207 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r 207 (377)
|..+.++|+.|+|+++ +|+++|||+|++||++|+.|||||||||.+.++.|+.+|++|+|.+||.|++.++... .|
T Consensus 2 ~~~L~a~~l~K~y~kr---~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RAr 78 (243)
T COG1137 2 MSTLVAENLAKSYKKR---KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRAR 78 (243)
T ss_pred CcEEEehhhhHhhCCe---eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhh
Confidence 3468999999999754 6999999999999999999999999999999999999999999999999999988654 35
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
..|||+||++.+| ..||+|||......... ......++..++++++.+....-....+..||||||+|+.|||||+.
T Consensus 79 lGigYLpQE~SIFr~LtV~dNi~~vlE~~~~--d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREK--DLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred cCcccccccchHhhcCcHHHHHHHHHhhhhc--chhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhc
Confidence 5699999999999 68999999754221110 00111111222333333322111111235799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH-HhcCeEEEEeCCEEEEEcChHHHhhcCHH
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKGRL 364 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~-~~~d~v~~l~~G~i~~~g~~~~l~~~~~~ 364 (377)
+|+.+|||||++|+||.+...|.++++.++. +|..|+++.|+..+. .-|||.+++.+|++..+|+|+++.+++..
T Consensus 157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~---rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~V 232 (243)
T COG1137 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLKD---RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDV 232 (243)
T ss_pred CCCEEEecCCccCCCchhHHHHHHHHHHHHh---CCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChhh
Confidence 9999999999999999999999999999974 589999999999765 56999999999999999999999987543
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-50 Score=364.47 Aligned_cols=204 Identities=27% Similarity=0.485 Sum_probs=173.2
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++|+|++. ++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++
T Consensus 1 i~~~~~~~~~~~~---~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGKK---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECCE---EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 5789999999643 6999999999999 99999999999999999999999999999999999887655 56678899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~~-~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|+||++.+|. .|+.||+.+... .... .+.+..+++..++.++.+..+ .+||||||||++|||||+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~ 146 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI---------GSLSGGMRRRVGIAQALV 146 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch---------hhCCHHHHHHHHHHHHHh
Confidence 9999999885 699999976311 0111 233445566666665544433 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
.+|++|||||||++||+.+++.+.+.|+++++ +.|+|++|||++.+.. |||+++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGE----DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC----CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999853 4799999999999865 9999999999998754
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=371.54 Aligned_cols=220 Identities=29% Similarity=0.495 Sum_probs=180.3
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCCCCHH
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIR 204 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~~~~ 204 (377)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 78 (250)
T PRK14247 2 NKIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78 (250)
T ss_pred ceEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHH
Confidence 35899999999975 3599999999999999999999999999999999999974 799999999998776666
Q ss_pred HHhcceEEEccCCcCc-cccHHHHHhcCCCC-C--CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 205 WLREKIGFVGQEPQLL-QMDIKSNIMYGCPK-D--VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~-~--~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
.+++.|+|+||++.++ ..|+.||+.++... . ... +.+.++++.+++.+.+.. .+ .....+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~--~~~~~~LSgG~~q 153 (250)
T PRK14247 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RL--DAPAGKLSGGQQQ 153 (250)
T ss_pred HHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hh--cCCcccCCHHHHH
Confidence 7788899999999765 68999999865311 1 011 122333444433211100 00 1113679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
|++|||||+.+|++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK----KDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPT 229 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCH
Confidence 9999999999999999999999999999999999999884 36899999999999864 999999999999999999
Q ss_pred HHHhhc
Q 017091 356 AELLHK 361 (377)
Q Consensus 356 ~~l~~~ 361 (377)
+++.+.
T Consensus 230 ~~~~~~ 235 (250)
T PRK14247 230 REVFTN 235 (250)
T ss_pred HHHHcC
Confidence 998765
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-49 Score=375.56 Aligned_cols=219 Identities=33% Similarity=0.572 Sum_probs=187.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCC---CeEEECCEeCCCCCHHHHh
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDIRWLR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~---G~I~i~g~~i~~~~~~~~r 207 (377)
.|+++|++|.|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...++
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 48999999999743 2369999999999999999999999999999999999999998 8999999999766666677
Q ss_pred cceEEEccCCc--CccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 208 EKIGFVGQEPQ--LLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 208 ~~i~~v~Q~~~--l~~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+++||+||++. ++..|+.||+.++.. ...+. +++.++++.+++.++.+..| .+||||||||++|
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LS~G~~qrv~l 154 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP---------ANLSGGQKQRVAI 154 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc---------ccCCHHHHHHHHH
Confidence 88999999984 457899999987532 11222 23445666667666655555 6799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
||||+.+|++|||||||++||+.++..+.+.|+++.++ .|+|||++||+++.+..||++++|++|++++.|++++++.
T Consensus 155 aral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 155 AGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKK--NNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998642 4789999999999987799999999999999999998865
Q ss_pred c
Q 017091 361 K 361 (377)
Q Consensus 361 ~ 361 (377)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 4
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=373.37 Aligned_cols=217 Identities=24% Similarity=0.399 Sum_probs=185.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 7 ~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 7 RLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred EEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 5899999999974 3699999999999999999999999999999999999999999999999998777666677789
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC------CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKD------VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~------~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+|+||++.+| ..|++||+.++.... .. .+.+.++++..++.++.++.+ ..||||||||++|
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrv~l 154 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV---------DTLSGGQRQRAWI 154 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc---------ccCChHHHHHHHH
Confidence 9999999887 579999998752111 01 123445556666655544433 6799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
|||++.+|++|||||||++||+.+++.+.+.|.++.+. .|.|||++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 155 aral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~--~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE--KGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999998642 37899999999998865 9999999999999999999886
Q ss_pred hc
Q 017091 360 HK 361 (377)
Q Consensus 360 ~~ 361 (377)
..
T Consensus 233 ~~ 234 (265)
T PRK10253 233 TA 234 (265)
T ss_pred hH
Confidence 53
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-50 Score=364.94 Aligned_cols=203 Identities=36% Similarity=0.553 Sum_probs=171.3
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH---HHhc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLRE 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r~ 208 (377)
|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++
T Consensus 2 l~~~~l~~~~~~~--~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPGG--VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCCC--ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 7899999999532 3699999999999999999999999999999999999999999999999998765532 3567
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
.++|++|++.+| ..|+.||+.++... ... .+++.++++..++.+..+..+ .+||||||||++|||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~ 150 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP---------EQLSGGEQQRVAIAR 150 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHHHH
Confidence 899999999888 57999999864210 111 223445555566655544443 579999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCE
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 348 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~ 348 (377)
||+.+|++|||||||++||+.++..+.+.|+++++ +|+|+|++||+++.+.. ||++++|++|+
T Consensus 151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK---RGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999854 37899999999999976 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=370.68 Aligned_cols=219 Identities=30% Similarity=0.447 Sum_probs=182.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC---CCCCeEEECCEeCCCCCHHHHh
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWLR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~---p~~G~I~i~g~~i~~~~~~~~r 207 (377)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+...++
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4889999999974 369999999999999999999999999999999999984 6999999999999876666678
Q ss_pred cceEEEccCCcCccccHHHHHhcCCCC-CC------CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 208 EKIGFVGQEPQLLQMDIKSNIMYGCPK-DV------KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+.++|+||++.+|..|++||+.++... .. ..+++...++.+++.+++.... .....+||||||||++|
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL-----KQNALALSGGQQQRLCI 153 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHh-----cCCcccCCHHHHHHHHH
Confidence 889999999999988999999875211 00 1112334445545433221110 11235799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|+++||||||++||+.++..+.+.|.++. .++|+|++||+++.+.. ||++++|++|++++.|++++++
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS----HNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh----CCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999884 37899999999999865 9999999999999999999987
Q ss_pred hc
Q 017091 360 HK 361 (377)
Q Consensus 360 ~~ 361 (377)
..
T Consensus 230 ~~ 231 (246)
T PRK14269 230 EN 231 (246)
T ss_pred hC
Confidence 64
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=374.06 Aligned_cols=228 Identities=30% Similarity=0.418 Sum_probs=182.1
Q ss_pred cEEEEEEEEEcCCC------CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH
Q 017091 131 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~ 204 (377)
+|+++||+|+|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 48999999999631 124699999999999999999999999999999999999999999999999998766543
Q ss_pred ---HHhcceEEEccCCc--Cc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCC
Q 017091 205 ---WLREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLS 271 (377)
Q Consensus 205 ---~~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~--~~~~----~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~LS 271 (377)
.+++.|+|+||++. ++ ..|++||+.++.. .... .+++.++++..++. ...+. ...+||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~~LS 152 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADK---------LPRQLS 152 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhC---------ChhhCC
Confidence 25678999999973 44 5799999865311 0111 12223333333332 12221 236799
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEE
Q 017091 272 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 350 (377)
Q Consensus 272 gGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~ 350 (377)
||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.+. .|+|||++|||++.+.. ||++++|++|+++
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA--FGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999998642 37899999999999975 9999999999999
Q ss_pred EEcChHHHhhcCH-HHHHHH
Q 017091 351 EVGNHAELLHKGR-LYAKLV 369 (377)
Q Consensus 351 ~~g~~~~l~~~~~-~~~~~~ 369 (377)
+.|+++++..... .++.+.
T Consensus 231 ~~g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 231 EECDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred EECCHHHHcCCCCHHHHHHH
Confidence 9999999987433 344443
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=370.78 Aligned_cols=217 Identities=24% Similarity=0.406 Sum_probs=180.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH-hcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~ 209 (377)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... +..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999974 369999999999999999999999999999999999999999999999999877665443 456
Q ss_pred eEEEccCCcCcc-ccHHHHHhcCCCCC----------------CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCC
Q 017091 210 IGFVGQEPQLLQ-MDIKSNIMYGCPKD----------------VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDD 268 (377)
Q Consensus 210 i~~v~Q~~~l~~-~tv~eni~~~~~~~----------------~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 268 (377)
++|+||++.+|. .|++||+.++.... .. .+.+.+.++..++.++.+.. ..
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~ 152 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ---------AG 152 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC---------hh
Confidence 999999999885 69999998752100 00 01122233334443333322 26
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 347 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G 347 (377)
+||||||||++|||||+.+|++|||||||++||+.++..+.+.|.+++++ .|.|||++||+++.+.. ||++++|++|
T Consensus 153 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 153 NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNE--HNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhh--cCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 79999999999999999999999999999999999999999999998642 37899999999999865 9999999999
Q ss_pred EEEEEcChHHHhhc
Q 017091 348 RIIEVGNHAELLHK 361 (377)
Q Consensus 348 ~i~~~g~~~~l~~~ 361 (377)
++++.|+++++.+.
T Consensus 231 ~i~~~~~~~~~~~~ 244 (255)
T PRK11300 231 TPLANGTPEEIRNN 244 (255)
T ss_pred eEEecCCHHHHhhC
Confidence 99999999988654
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=371.33 Aligned_cols=216 Identities=31% Similarity=0.496 Sum_probs=182.0
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC---------
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--------- 202 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~--------- 202 (377)
|+++||++.|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 479999999974 36999999999999999999999999999999999999999999999999886542
Q ss_pred ----HHHHhcceEEEccCCcCc-cccHHHHHhcCCC--CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCC
Q 017091 203 ----IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLS 271 (377)
Q Consensus 203 ----~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LS 271 (377)
...+++.++|++|++.+| ..|+.||+.++.. .... .+.+.++++..++.++++..+ .+||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS 148 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP---------AQLS 148 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh---------hhcC
Confidence 134577899999999888 5899999986421 0111 123344555555555544443 5799
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEE
Q 017091 272 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 350 (377)
Q Consensus 272 gGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~ 350 (377)
||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.++ .|.|+|++||+++.+.. ||++++|++|+++
T Consensus 149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE--HDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999988642 37899999999999865 9999999999999
Q ss_pred EEcChHHHhhc
Q 017091 351 EVGNHAELLHK 361 (377)
Q Consensus 351 ~~g~~~~l~~~ 361 (377)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999998764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=368.27 Aligned_cols=216 Identities=25% Similarity=0.437 Sum_probs=179.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~ 209 (377)
.++++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 5899999999974 36999999999999999999999999999999999999999999999999987666533 4678
Q ss_pred eEEEccCCcCcc-ccHHHHHhcCCCC--CCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 210 IGFVGQEPQLLQ-MDIKSNIMYGCPK--DVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 210 i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
++|+||++.++. .|+.||+.+.... ....+ .+.+.++..++.+..+. ....||||||||++|||
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~qrv~lar 150 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDS---------MGQSLSGGERRRVEIAR 150 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhc---------chhhCCHHHHHHHHHHH
Confidence 999999998885 7999999875211 11111 12222333333222211 22579999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
|++.+|++|||||||++||+.++..+.+.+.++++ .|+|+|++||+++.+.. ||++++|++|++++.|+++++++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 151 ALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD---SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999999999998863 47899999999988865 999999999999999999998754
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-50 Score=370.91 Aligned_cols=221 Identities=36% Similarity=0.529 Sum_probs=195.3
Q ss_pred cEEEEEEEEEcCCCC---------------------CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC
Q 017091 131 HVQFVNISFHYPSRP---------------------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 189 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~---------------------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G 189 (377)
.|+++||++-|+.+. -...++|+||+|+.||++.|.|-||||||||+|++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 588999999887532 12358999999999999999999999999999999999999999
Q ss_pred eEEECCEeCCCCCHHHH----hcceEEEccCCcCc-cccHHHHHhcCCCC-----CCCHHHHHHHHHHcCHHHHHHhCCC
Q 017091 190 QIYIDGFPLTDLDIRWL----REKIGFVGQEPQLL-QMDIKSNIMYGCPK-----DVKNEDIEWAAKQAYVHEFILSLPC 259 (377)
Q Consensus 190 ~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~l~-~~tv~eni~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~ 259 (377)
+|+++|.++..++.+++ |+++++|||+..|+ ..||.||+.||..- ....+...++++.+++..|-+++|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 99999999999887554 45799999999988 68999999998631 222344566888999999999988
Q ss_pred CcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-c
Q 017091 260 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-V 338 (377)
Q Consensus 260 ~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~ 338 (377)
++|||||||||.|||||+.+|+|||+|||+|+|||--+.++++.|.+++++ -++|||+||||++++-+ .
T Consensus 163 --------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~--l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 --------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK--LKKTIVFITHDLDEALRIG 232 (386)
T ss_pred --------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHH--hCCeEEEEecCHHHHHhcc
Confidence 679999999999999999999999999999999999999999999998765 47899999999999865 9
Q ss_pred CeEEEEeCCEEEEEcChHHHhhcC
Q 017091 339 DRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 339 d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|||.+|++|+|+..|+|+|++.+.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCc
Confidence 999999999999999999998764
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=374.14 Aligned_cols=220 Identities=31% Similarity=0.493 Sum_probs=184.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999753 23599999999999999999999999999999999999999999999999998777666778889
Q ss_pred EEEccCCc-Cc-cccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 211 GFVGQEPQ-LL-QMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 211 ~~v~Q~~~-l~-~~tv~eni~~~~~~-~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
+|+||++. +| ..|+.+|+.++... .... +.+..+++..++.++.+.. ..+||||||||++||||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrl~lara 156 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYE---------PNALSGGQKQRVAIAGV 156 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC---------cccCCHHHHHHHHHHHH
Confidence 99999984 44 67899999875321 1111 2233344444444443332 26799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
++.+|++|||||||++||+.+++.+.+.|+++.++ .|+|||++||+++.+..||+|++|++|++++.|+++++....
T Consensus 157 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 157 LALNPSVIILDEATSMLDPDARQNLLDLVRKVKSE--HNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999999988542 378999999999988779999999999999999999987653
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=371.88 Aligned_cols=219 Identities=32% Similarity=0.540 Sum_probs=179.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCC--CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~~ 203 (377)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4899999999974 359999999999999999999999999999999999974 689999999999864 234
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCC-CCC-C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~-~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|+||++.+|+.|++||+.++.. ... . .+++..+++.+++.+.+... ......+||||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LSgGq~qr 157 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDR-----LHESALGLSGGQQQR 157 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHH-----hhCCcccCCHHHHHH
Confidence 456788999999998887899999987421 111 1 12333444444443221110 011136799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
|+|||||+.+|++|||||||++||+.++..+.+.|++++ +++|||++|||++.+.. ||+|++|++|++++.|+++
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK----ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----cCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999984 26799999999999865 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 98764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=367.43 Aligned_cols=223 Identities=24% Similarity=0.424 Sum_probs=178.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~ 209 (377)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 4899999999974 36999999999999999999999999999999999999999999999999987665543 3457
Q ss_pred eEEEccCCcCcc-ccHHHHHhcCCCCCCCH-HH---HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKN-ED---IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 210 i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
++|+||++.+|. .|++||+.++....... .. .........+.++++.+............||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 999999999885 69999998753211000 00 00000011123334433221111112367999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG----KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc----CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999999999999999999852 5799999999999975 99999999999999999999875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-49 Score=364.89 Aligned_cols=213 Identities=27% Similarity=0.435 Sum_probs=176.6
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hhcce
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREKI 210 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~i 210 (377)
|+++||++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 478999999974 36999999999999999999999999999999999999999999999999987766543 35679
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCCC-CC-HHHHHHHHHHcC-HHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 211 GFVGQEPQLLQ-MDIKSNIMYGCPKD-VK-NEDIEWAAKQAY-VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 211 ~~v~Q~~~l~~-~tv~eni~~~~~~~-~~-~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
+|+||++.+|. .|+.||+.++.... .. .+...+.++..+ +.+..+.. ..+||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~---------~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRR---------GGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCC---------hhhCCHHHHHHHHHHHHHhc
Confidence 99999999885 69999998653211 11 111222333322 22222222 25799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHH
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l 358 (377)
+|+++||||||++||+.++..+.+.|.++.++ .++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE--GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHc--CCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999998642 37899999999999975 999999999999999999887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=364.98 Aligned_cols=215 Identities=49% Similarity=0.801 Sum_probs=184.3
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
+.|+++|++++|++....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 89 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSK 89 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhh
Confidence 46999999999975322369999999999999999999999999999999999999999999999998876666666788
Q ss_pred eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCC
Q 017091 210 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 210 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~ 287 (377)
++|++|++.+|+.|++||+.++.. .....++....+..++.++++.++.|+.+... ..+|||||||||+|||||+.+
T Consensus 90 i~~~~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 90 VSLVGQEPVLFARSLQDNIAYGLQ-SCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred EEEEecccHHHhhhHHHHhccccC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999888899999987643 22233333444556778888888766665443 468999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEE
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 349 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i 349 (377)
|++|||||||++||+.+++.+.+.|+++. ++.|+|++||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWP----ERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999884 25799999999999977999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=364.89 Aligned_cols=206 Identities=28% Similarity=0.468 Sum_probs=172.8
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH---HHhc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLRE 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r~ 208 (377)
|+++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 7899999999422 3699999999999999999999999999999999999999999999999998765433 3567
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
.++|+||++.++ ..|++||+.++.. .....+ ++.++++..++.++.++.+ .+||||||||++|||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lar 150 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP---------IQLSGGEQQRVGIAR 150 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCc---------hhCCHHHHHHHHHHH
Confidence 899999999875 7899999987421 111221 2334555555555444433 679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEE
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 351 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~ 351 (377)
||+.+|++|||||||++||+.+++.+.+.|.++++ .+.|+|++||+++.+.. ||+|++|++|+++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR---VGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999999854 37899999999999976 99999999999864
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=363.42 Aligned_cols=203 Identities=37% Similarity=0.625 Sum_probs=170.5
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 212 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 212 (377)
+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999752 1369999999999999999999999999999999999999999999999999876666667788999
Q ss_pred EccCCc--CccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 213 VGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 213 v~Q~~~--l~~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
+||++. ++..|++||+.++... ... .+.+.+.++..++.+++++.+ ..||||||||++|||||+
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~laral~ 150 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP---------FTLSGGQKQRVAIAGVLA 150 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHHHHHHHHHHHHh
Confidence 999984 4578999999764211 111 122344555556555544433 679999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCE
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 348 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~ 348 (377)
.+|++|||||||++||+.+++.+.+.|.++.+ +|+|||++|||++.+.. ||+|++|++|+
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~---~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKA---EGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999998864 37899999999999976 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-49 Score=364.12 Aligned_cols=211 Identities=28% Similarity=0.421 Sum_probs=175.6
Q ss_pred cEEEEEEEEEcCCCCC-CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH---H
Q 017091 131 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~-~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~ 206 (377)
.|+++||+++|++... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999975311 25999999999999999999999999999999999999999999999999987765432 2
Q ss_pred -hcceEEEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 207 -REKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 207 -r~~i~~v~Q~~~l~~-~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
++.++|+||++.++. .|+.||+.++.. .... .+++.++++..++.++++..| ..||||||||++
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Ge~qrl~ 156 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP---------AQLSGGEQQRVA 156 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh---------hhCCHHHHHHHH
Confidence 357999999998885 699999976321 1111 223445556666655555444 579999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEE
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 352 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~ 352 (377)
|||||+.+|++|||||||++||+.+.+.+.+.|++++++ .|.|||++|||++.+..||++++|++|++++.
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNRE--HGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998642 37899999999998877999999999999763
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=374.60 Aligned_cols=216 Identities=28% Similarity=0.488 Sum_probs=180.3
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC--CCHHHHhcc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREK 209 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--~~~~~~r~~ 209 (377)
|+++||+++|++. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 7899999999642 359999999999999999999999999999999999999999999999999852 223456788
Q ss_pred eEEEccCC--cCccccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 210 IGFVGQEP--QLLQMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 210 i~~v~Q~~--~l~~~tv~eni~~~~~~-~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
|+|+||++ .++..|+.||+.++... .... +.+.++++..++.++.+.. ..+|||||+||++|||
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~---------~~~LS~Gq~qrv~lar 150 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP---------PHHLSGGQKKRVAIAG 150 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC---------hhhCCHHHHHHHHHHH
Confidence 99999997 45678999999875211 1111 2233444555554433332 2679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|++|||||||++||+.++..+.+.|.++.+ .|.|||++|||++.+.. ||++++|++|++++.|++++++..
T Consensus 151 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~---~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK---EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999863 37899999999999875 999999999999999999998764
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-49 Score=367.60 Aligned_cols=216 Identities=28% Similarity=0.456 Sum_probs=179.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC------CCHH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD------LDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~------~~~~ 204 (377)
+|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 4899999999974 369999999999999999999999999999999999999999999999998731 1234
Q ss_pred HHhcceEEEccCCcCc-cccHHHHHhcCCC--CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 205 WLREKIGFVGQEPQLL-QMDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~--~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++|+|+||++.+| ..|+.||+.++.. ..... +.+.+.++..++.++++..+ ..||||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qr 149 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP---------LHLSGGQQQR 149 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHH
Confidence 5677899999999888 4799999964211 01111 22333444555544444433 5799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|+++||||||++||+.++..+.+.|+++++ .|+|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~ 226 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999853 47899999999999865 9999999999999999998
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++...
T Consensus 227 ~~~~~ 231 (242)
T PRK11124 227 CFTQP 231 (242)
T ss_pred HhcCc
Confidence 87543
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-49 Score=375.66 Aligned_cols=223 Identities=29% Similarity=0.457 Sum_probs=178.6
Q ss_pred cEEEEEEEEEcCCCC--CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC----CHH
Q 017091 131 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~----~~~ 204 (377)
.|+++||+++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 389999999997421 13699999999999999999999999999999999999999999999999998653 234
Q ss_pred HHhcceEEEccCC--cCccccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHHHHH
Q 017091 205 WLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 205 ~~r~~i~~v~Q~~--~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~LSgGq~QRv~i 280 (377)
.+++.|+|+||++ .+|..|++||+.++.. .....++.... +.++++.+... ........+||||||||++|
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~l 156 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALVGISESLFEKNPFELSGGQMRRVAI 156 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 5677899999997 5677899999986421 11122221111 12223332211 00111236799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++|||||||++||+.+++.+.+.|+++++ .|+|||++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 157 AGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ---SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999863 37899999999999865 9999999999999999998886
Q ss_pred hc
Q 017091 360 HK 361 (377)
Q Consensus 360 ~~ 361 (377)
..
T Consensus 234 ~~ 235 (280)
T PRK13649 234 QD 235 (280)
T ss_pred cC
Confidence 64
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=380.03 Aligned_cols=213 Identities=22% Similarity=0.415 Sum_probs=180.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++++|++++|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.. ....+++++
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~i 77 (301)
T TIGR03522 2 SIRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNI 77 (301)
T ss_pred EEEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhce
Confidence 4899999999974 369999999999999999999999999999999999999999999999999865 345667889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
||+||++.++ ..|+.||+.+... .... .+++.++++..++.++.++. ...||||||||++|||||
T Consensus 78 g~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 78 GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKK---------IGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred EEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCc---------hhhCCHHHHHHHHHHHHH
Confidence 9999999988 5799999975321 0111 12333444444444433332 257999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
+.+|++|||||||+|||+.+++.+++.+++++ .++|||++||+++.+.. ||||++|++|+++..|+++++..
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~----~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG----KDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999984 26899999999999876 99999999999999999999865
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-49 Score=370.09 Aligned_cols=214 Identities=26% Similarity=0.424 Sum_probs=181.7
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999975 36999999999999999999999999999999999999999999999999988777666777899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCC------C---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPKD------V---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~~------~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
|++|++.++ ..|++||+.++.... . ..+.+.++++..++.++.+..+ ..||||||||++||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la 149 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM---------STLSGGERQRVHVA 149 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHHHHHHHHH
Confidence 999998654 689999998752110 0 1112334445555544433322 57999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
||++.+|+++||||||++||+.+...+.+.|+++++ +|.|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 150 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 150 RALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA---TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999999999863 37899999999999965 99999999999999999998865
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=362.41 Aligned_cols=204 Identities=32% Similarity=0.542 Sum_probs=172.0
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH---HHHhc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~~r~ 208 (377)
++++|++++|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999642 369999999999999999999999999999999999999999999999999876543 23567
Q ss_pred ceEEEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~~-~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
.++|+||++.+|. .|++||+.++... ... .+++.++++..++.+..+..+ .+||||||||++|||
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lar 149 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP---------AELSGGEQQRVAIAR 149 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh---------hhcCHHHHHHHHHHH
Confidence 8999999998885 7999999864211 111 223445556666655554444 579999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
||+.+|+++||||||++||+.+++.+.+.|+++.+ +|+|+|++||+++.+.. ||++++|++|++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~---~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK---AGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999853 37899999999999975 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-49 Score=376.53 Aligned_cols=222 Identities=28% Similarity=0.516 Sum_probs=178.5
Q ss_pred ccEEEEEEEEEcCCCC--CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC----C-C
Q 017091 130 GHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----L-D 202 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~----~-~ 202 (377)
+.|+++|++++|+++. ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 3599999999997531 1259999999999999999999999999999999999999999999999998752 1 2
Q ss_pred HHHHhcceEEEccCC--cCccccHHHHHhcCCCC-CCCHHH----HHHHHHHcCH-HHHHHhCCCCcccccCCCCCChHH
Q 017091 203 IRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNED----IEWAAKQAYV-HEFILSLPCGYETLVDDDLLSGGQ 274 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~--~l~~~tv~eni~~~~~~-~~~~~~----~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~LSgGq 274 (377)
...+++.|+|++|++ .+|..|++||+.++... ....++ +...++..++ .++.+ ....+|||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~---------~~~~~LS~Gq 155 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVK---------RSPFELSGGQ 155 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhc---------CChhhCCHHH
Confidence 345677899999998 35677999999875311 112221 1122222222 11111 1236799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+. .|+|||+|||+++.+.. ||++++|++|++++.|
T Consensus 156 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 156 KRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE--YKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999988642 37899999999998865 9999999999999999
Q ss_pred ChHHHhhcC
Q 017091 354 NHAELLHKG 362 (377)
Q Consensus 354 ~~~~l~~~~ 362 (377)
+++++++..
T Consensus 234 ~~~~~~~~~ 242 (289)
T PRK13645 234 SPFEIFSNQ 242 (289)
T ss_pred CHHHHhcCH
Confidence 998876543
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-49 Score=370.15 Aligned_cols=206 Identities=32% Similarity=0.439 Sum_probs=177.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+++.+
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 5999999999974 36999999999999999999999999999999999999999999999998753 346789
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 017091 211 GFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 211 ~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 289 (377)
+|++|++.+|. .|++||+.++.. ....+++.++++..++.+..++.+ .+||||||||++|||||+.+|+
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK-GQWRDAALQALAAVGLADRANEWP---------AALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc-chHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99999998885 799999987532 112344555666666665554443 5799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
+|||||||++||+.++..+.+.|+++.++ .++|||+||||++.+.. ||+|++|++|++++.++.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQ--HGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999988542 47899999999999865 9999999999999988654
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-49 Score=370.09 Aligned_cols=221 Identities=34% Similarity=0.542 Sum_probs=180.4
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCC--C
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--L 201 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~ 201 (377)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 346999999999974 369999999999999999999999999999999999986 589999999999853 3
Q ss_pred CHHHHhcceEEEccCCcCccccHHHHHhcCCCC--CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 017091 202 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK--DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 275 (377)
Q Consensus 202 ~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~--~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~ 275 (377)
+...++++|+|+||++.+|+.|++||+.++... .... +++.++++..++.+.+... ......+||||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LS~Gq~ 162 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDK-----LHQSGYSLSGGQQ 162 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH-----HhcCCCCCCHHHH
Confidence 345667889999999998889999999875211 1121 2233444444432111100 0111257999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
||++|||||+.+|++|||||||++||+.+++.+.+.|++++ ++.|||++||+++.+.. ||++++|++|++++.|+
T Consensus 163 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 238 (260)
T PRK10744 163 QRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK----QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGN 238 (260)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999984 25799999999999865 99999999999999999
Q ss_pred hHHHhhc
Q 017091 355 HAELLHK 361 (377)
Q Consensus 355 ~~~l~~~ 361 (377)
++++.+.
T Consensus 239 ~~~~~~~ 245 (260)
T PRK10744 239 TDTIFTK 245 (260)
T ss_pred HHHHHhC
Confidence 9998764
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-49 Score=362.47 Aligned_cols=214 Identities=32% Similarity=0.490 Sum_probs=183.2
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++||+++|++. ..|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 2 l~~~~l~~~~~~~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHHL-----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECCc-----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 7899999999642 239999999999999999999999999999999999999999999998875543 246799
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~~-~tv~eni~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|+||++.+|. .|+.||+.++.... ..++++.++++..++.+++++.| ..||||||||++||||++
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP---------GQLSGGQRQRVALARCLV 145 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc---------ccCCHHHHHHHHHHHHHh
Confidence 9999998885 69999998753111 11234556677777777666665 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcCH
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGR 363 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~~ 363 (377)
.+|+++||||||++||+.+++.+.+.|.++.++ .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+...
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~~ 222 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQE--RQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKA 222 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhChh
Confidence 999999999999999999999999999988542 37899999999999865 99999999999999999999887653
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-49 Score=369.70 Aligned_cols=219 Identities=31% Similarity=0.478 Sum_probs=178.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCC--CCCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLT--DLDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~--~~~~ 203 (377)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. ..+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 5899999999974 3599999999999999999999999999999999999987 4999999999986 3344
Q ss_pred HHHhcceEEEccCCcCcc-ccHHHHHhcCCC-CCC--CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 017091 204 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDV--KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 275 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~-~~~--~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~ 275 (377)
..++++++|+||++.+|. .|+.||+.++.. ... .. +.+.++++..++.+.+.. .......+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~G~~ 155 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-----RLNDYPSNLSGGQR 155 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-----hhccChhhCCHHHH
Confidence 566778999999998884 699999986421 110 11 122333443333211110 00112357999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
||++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELK----KEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----hCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999984 25799999999999865 99999999999999999
Q ss_pred hHHHhhc
Q 017091 355 HAELLHK 361 (377)
Q Consensus 355 ~~~l~~~ 361 (377)
++++++.
T Consensus 232 ~~~~~~~ 238 (253)
T PRK14267 232 TRKVFEN 238 (253)
T ss_pred HHHHHhC
Confidence 9998764
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-49 Score=369.64 Aligned_cols=217 Identities=30% Similarity=0.448 Sum_probs=179.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC---------
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--------- 201 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~--------- 201 (377)
.|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 5 KLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred cEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 5899999999974 3699999999999999999999999999999999999999999999999987531
Q ss_pred ----CHHHHhcceEEEccCCcCcc-ccHHHHHhcCCC--CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCC
Q 017091 202 ----DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLL 270 (377)
Q Consensus 202 ----~~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~--~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L 270 (377)
....+++.++|+||++.++. .|++||+.++.. ..... +++.+.++..++.++.. .....+|
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~L 153 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ--------GKYPVHL 153 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh--------hCCcccC
Confidence 12355778999999999885 799999976311 01111 12233344444333220 1123679
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 271 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 271 SgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
|||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++ .|+|||+||||++.+.. ||||++|++|++
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~---~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE---EGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999863 38899999999999976 999999999999
Q ss_pred EEEcChHHHhhc
Q 017091 350 IEVGNHAELLHK 361 (377)
Q Consensus 350 ~~~g~~~~l~~~ 361 (377)
++.|+++++...
T Consensus 231 ~~~~~~~~~~~~ 242 (257)
T PRK10619 231 EEEGAPEQLFGN 242 (257)
T ss_pred EEeCCHHHhhhC
Confidence 999999998754
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-49 Score=382.14 Aligned_cols=227 Identities=23% Similarity=0.368 Sum_probs=183.4
Q ss_pred cEEEEEEEEEcCCC-CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC----CCCCeEEECCEeCCCCCHHH
Q 017091 131 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQIYIDGFPLTDLDIRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~----p~~G~I~i~g~~i~~~~~~~ 205 (377)
.|+++||+++|+.. ....+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++...+...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 58999999999532 12469999999999999999999999999999999999996 58999999999998776544
Q ss_pred H----hcceEEEccCCc--Cc-cccHHHHHhcCCC---CC----CC----HHHHHHHHHHcCHHH---HHHhCCCCcccc
Q 017091 206 L----REKIGFVGQEPQ--LL-QMDIKSNIMYGCP---KD----VK----NEDIEWAAKQAYVHE---FILSLPCGYETL 264 (377)
Q Consensus 206 ~----r~~i~~v~Q~~~--l~-~~tv~eni~~~~~---~~----~~----~~~~~~~~~~~~l~~---~~~~~~~~~~~~ 264 (377)
+ ++.|+||||++. ++ ..||.+|+..... .. .. .+++.+.++.+++.+ .++..|
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p------ 156 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP------ 156 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc------
Confidence 3 347999999986 33 4789999864210 00 00 123344455555532 223333
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEE
Q 017091 265 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVV 343 (377)
Q Consensus 265 ~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~ 343 (377)
.+|||||||||+|||||+.+|++||+||||++||+.++..+.+.|++++++ .|.|+|+||||++.+.. ||+|++
T Consensus 157 ---~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~g~tii~itHdl~~v~~~~dri~v 231 (330)
T PRK15093 157 ---YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN--NNTTILLISHDLQMLSQWADKINV 231 (330)
T ss_pred ---hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEE
Confidence 679999999999999999999999999999999999999999999998653 48899999999999975 999999
Q ss_pred EeCCEEEEEcChHHHhhc-CHHHHHH
Q 017091 344 IDDGRIIEVGNHAELLHK-GRLYAKL 368 (377)
Q Consensus 344 l~~G~i~~~g~~~~l~~~-~~~~~~~ 368 (377)
|++|+|++.|++++++.+ ...|.+.
T Consensus 232 m~~G~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 232 LYCGQTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred EECCEEEEECCHHHHHhCCCCHHHHH
Confidence 999999999999999865 3346553
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=363.85 Aligned_cols=200 Identities=29% Similarity=0.554 Sum_probs=167.4
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 212 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 212 (377)
+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .++++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999974 35999999999999999999999999999999999999999999999998763 35678999
Q ss_pred EccCCcC---ccccHHHHHhcCCCCC------C---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 213 VGQEPQL---LQMDIKSNIMYGCPKD------V---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 213 v~Q~~~l---~~~tv~eni~~~~~~~------~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+||++.+ +..|++||+.++.... . ..+++.++++..++.++.++.+ .+||||||||++|
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~l 143 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI---------GELSGGQQQRVLL 143 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc---------ccCCHHHHHHHHH
Confidence 9999876 4579999998753211 0 1223445566666655554433 5799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
||||+.+|++|||||||++||+.+++.+.+.|+++.+ +|.|+|++|||++.+.. ||++++|++| +++.|
T Consensus 144 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR---EGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999864 37899999999999865 9999999886 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=380.48 Aligned_cols=207 Identities=26% Similarity=0.417 Sum_probs=172.4
Q ss_pred EEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCc
Q 017091 139 FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ 218 (377)
Q Consensus 139 ~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 218 (377)
++|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.. ....+++++||+||++.
T Consensus 1 k~y~~---~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~ 76 (302)
T TIGR01188 1 KVYGD---FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYAS 76 (302)
T ss_pred CeeCC---eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCC
Confidence 35653 369999999999999999999999999999999999999999999999999865 34456778999999998
Q ss_pred Cc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEE
Q 017091 219 LL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 292 (377)
Q Consensus 219 l~-~~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ill 292 (377)
++ ..|++||+.+... .... .+++.++++.+++.+..++. ..+||||||||++|||||+.+|++||
T Consensus 77 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 77 VDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRP---------VGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCc---------hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88 5799999976321 1111 12233444555544333322 26799999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 293 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 293 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
|||||+|||+.+++.+.+.|+++++ .|+|||++||+++.+.. ||+|++|++|+++..|+++++.+.
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~---~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKE---EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999999999999999999864 37899999999999975 999999999999999999988643
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-49 Score=358.53 Aligned_cols=204 Identities=34% Similarity=0.539 Sum_probs=173.5
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++. . .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 4789999999742 2 39999999999999999999999999999999999999999999999876543 356799
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~~-~tv~eni~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|++|++.+|. .|++||+.++.... ..++++.++++..++.++.+..| .+||||||||++|||||+
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP---------GELSGGERQRVALARVLV 144 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc---------ccCCHHHHHHHHHHHHHh
Confidence 9999999885 69999998753211 11234555667777766666555 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
.+|++|||||||++||+.++..+.+.|++++++ .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE--TKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999998642 47899999999999965 9999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-49 Score=385.99 Aligned_cols=212 Identities=28% Similarity=0.419 Sum_probs=176.2
Q ss_pred EEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCE----eCCCCCHHH---Hh-
Q 017091 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF----PLTDLDIRW---LR- 207 (377)
Q Consensus 136 ~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~----~i~~~~~~~---~r- 207 (377)
++.+.|+. ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|. ++...+... .|
T Consensus 29 ~~~~~~g~---~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~ 105 (382)
T TIGR03415 29 EILDETGL---VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRT 105 (382)
T ss_pred HHHHhhCC---EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhc
Confidence 33445543 36899999999999999999999999999999999999999999999997 555554433 23
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 208 EKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~-~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
++|+|+||++.+|+ .|++||+.++... ... .+...++++.+++.++.+..| .+|||||||||+||
T Consensus 106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~---------~~LSgGq~QRV~LA 176 (382)
T TIGR03415 106 HRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP---------GELSGGMQQRVGLA 176 (382)
T ss_pred CCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHH
Confidence 57999999999985 8999999876311 111 123345566666655555444 57999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|||+.+|+||||||||++||+.++..+++.|.+++++ .++|+|+||||++++.. ||||++|++|++++.|++++++.
T Consensus 177 RALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~--~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 177 RAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAK--LNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 9999999999999999999999999999999998653 47899999999999855 99999999999999999999986
Q ss_pred c
Q 017091 361 K 361 (377)
Q Consensus 361 ~ 361 (377)
+
T Consensus 255 ~ 255 (382)
T TIGR03415 255 N 255 (382)
T ss_pred C
Confidence 5
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-49 Score=370.45 Aligned_cols=221 Identities=31% Similarity=0.470 Sum_probs=180.6
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCC--C
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--L 201 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~ 201 (377)
...|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 346999999999974 3699999999999999999999999999999999999975 89999999999864 2
Q ss_pred CHHHHhcceEEEccCCcCccccHHHHHhcCCC-CCC--C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH
Q 017091 202 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV--K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 274 (377)
Q Consensus 202 ~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~--~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq 274 (377)
+...+++.++|+||++.+|..|+.||+.++.. ... . .+++..+++..++.+.+... ......+|||||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LSgGq 168 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDR-----LHEPGTGLSGGQ 168 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHH-----hhCCcccCCHHH
Confidence 34556788999999999887799999987521 010 1 12233444444443221100 011135799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
|||++|||||+.+|++|||||||++||+.++..+.+.|+++. .+.|||++||+++.+.. ||++++|++|++++.|
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~----~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g 244 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR----QNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVG 244 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh----cCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999884 25799999999999965 9999999999999999
Q ss_pred ChHHHhhc
Q 017091 354 NHAELLHK 361 (377)
Q Consensus 354 ~~~~l~~~ 361 (377)
++++++..
T Consensus 245 ~~~~~~~~ 252 (267)
T PRK14235 245 DTEKMFTN 252 (267)
T ss_pred CHHHHHhC
Confidence 99998754
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-49 Score=384.53 Aligned_cols=213 Identities=29% Similarity=0.492 Sum_probs=183.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC----HHHHh
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLR 207 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~~r 207 (377)
|++ ||+++|++. .+ |+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ....+
T Consensus 2 l~~-~l~k~~~~~----~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGDL----CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCCE----EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 778 999999742 33 999999999999999999999999999999999999999999999886421 23456
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
++++|+||++.+| ..|++||+.++.. ....+++.+.++..++.+++++.| .+|||||||||+|||||+.
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMA-KSMVAQFDKIVALLGIEPLLDRYP---------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhh-hhhHHHHHHHHHHcCCchhhhCCc---------ccCCHHHHHHHHHHHHHHc
Confidence 7899999999988 5799999998643 223445566677777666655555 6799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
+|++|||||||++||+.+++.+.+.|+++.++ .|.|+|+||||++.+.. ||++++|++|++++.|++++++.+.
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLARE--INIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999998653 37899999999998865 9999999999999999999998764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=368.75 Aligned_cols=230 Identities=26% Similarity=0.444 Sum_probs=185.2
Q ss_pred cEEEEEEEEEcCCC------CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH
Q 017091 131 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~ 204 (377)
+|+++||+++|+.. ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 123699999999999999999999999999999999999999999999999998654444
Q ss_pred HHhcceEEEccCCc--Cc-cccHHHHHhcCCCC--CCC----HHHHHHHHHHcCH-HHHHHhCCCCcccccCCCCCChHH
Q 017091 205 WLREKIGFVGQEPQ--LL-QMDIKSNIMYGCPK--DVK----NEDIEWAAKQAYV-HEFILSLPCGYETLVDDDLLSGGQ 274 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~~--~~~----~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~LSgGq 274 (377)
..++.++|+||++. ++ ..|+.+|+.+.... ... .+++.++++.+++ .+..+.. ..+|||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LS~G~ 154 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYY---------PHMLAPGQ 154 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcC---------chhcCHHH
Confidence 55668999999985 34 46899998653110 111 1233444555554 2222222 25799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
|||++|||||+.+|++|||||||++||+.+++.+.+.|.++.++ .|.|||++||+++.+.. ||++++|++|++++.|
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK--QGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999998642 37899999999999976 9999999999999999
Q ss_pred ChHHHhhcC--HHHHHHHHH
Q 017091 354 NHAELLHKG--RLYAKLVKR 371 (377)
Q Consensus 354 ~~~~l~~~~--~~~~~~~~~ 371 (377)
+++++.+.. ..+.+++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~ 252 (267)
T PRK15112 233 STADVLASPLHELTKRLIAG 252 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHh
Confidence 999987653 445666654
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-49 Score=361.18 Aligned_cols=211 Identities=34% Similarity=0.497 Sum_probs=169.5
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH---HHHh
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLR 207 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~~r 207 (377)
|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 1269999999999999999999999999999999999999999999999999876653 4567
Q ss_pred cceEEEccCC--cCc-cccHHHHHhcCCCC---CCCHHHHH----HHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHH
Q 017091 208 EKIGFVGQEP--QLL-QMDIKSNIMYGCPK---DVKNEDIE----WAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 208 ~~i~~v~Q~~--~l~-~~tv~eni~~~~~~---~~~~~~~~----~~~~~~~l~-~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
+.++|++|++ .++ ..|++||+.++... ....+... +.++..++. .+.+. ...+|||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~~LS~G~~q 152 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNR---------YPHELSGGQRQ 152 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhC---------CchhcCHHHHH
Confidence 7899999998 344 58999999753211 11111111 222233321 12222 23679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|+|||++||+++.+.. ||++++|++|++++.|
T Consensus 153 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE--LGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999998642 37899999999999875 9999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-49 Score=359.23 Aligned_cols=203 Identities=27% Similarity=0.525 Sum_probs=168.9
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999974 369999999999999999999999999999999999999999999999987642 3567899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~~-~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|+||++.++. .|++||+.+... .... .+.+.+.++..++.+..+..+ .+||||||||++|||||+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV---------EELSKGNQQKVQFIAAVI 144 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcH---------hhCCHHHHHHHHHHHHHh
Confidence 9999998884 799999976421 0111 122333444444444333322 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
.+|+++||||||++||+.+++.+.+.|+++++ +++|||++||+++.+.. ||++++|++|++++.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~---~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELAR---AGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998864 37899999999999865 9999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-49 Score=368.91 Aligned_cols=220 Identities=30% Similarity=0.478 Sum_probs=178.0
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCCCC--
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLD-- 202 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~~-- 202 (377)
..|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 35999999999974 3599999999999999999999999999999999999985 8999999999885432
Q ss_pred HHHHhcceEEEccCCcCccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
...+++.++|+||++.+|..|++||+.++.. .....+ .+.++++.+++.+.+.. .+ ......||||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~--~~~~~~LSgG~~qr 162 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSD---RL--KSPALSLSGGQQQR 162 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhh---hh--cCChhhCCHHHHHH
Confidence 3345778999999998888999999987421 111121 12233333333111000 01 11135799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.++..+.+.|++++ +++|||++|||++.+.. ||+|++|++|++++.|+++
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~----~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 238 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK----KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTR 238 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh----hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999884 26899999999999865 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++.++
T Consensus 239 ~~~~~ 243 (258)
T PRK14268 239 QIFHN 243 (258)
T ss_pred HHhcC
Confidence 98754
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-49 Score=359.45 Aligned_cols=203 Identities=37% Similarity=0.545 Sum_probs=170.0
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC--CCHHHHhcc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREK 209 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--~~~~~~r~~ 209 (377)
|+++||+++|++ .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....+++.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999975 369999999999999999999999999999999999999999999999998853 233456788
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCC--CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~--~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
++|+||++.+| ..|++||+.++.. ..... +++.++++..++.+.+++.+ .+||||||||++|||
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~ 148 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP---------AQLSGGQQQRVAIAR 148 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc---------cccCHHHHHHHHHHH
Confidence 99999999888 4799999976421 11111 22334445555554444433 679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
|++.+|++|||||||++||+.+++.+.+.|+++++ .|+|||++||+++.+.. ||++++|++|++
T Consensus 149 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 149 ALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE---EGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 37899999999999965 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=378.96 Aligned_cols=229 Identities=26% Similarity=0.402 Sum_probs=182.0
Q ss_pred cEEEEEEEEEcCCC-CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC---CCeEEECCEeCCCCCHHHH
Q 017091 131 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWL 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~~~~~ 206 (377)
.|+++|+++.|+.. ....+|+||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 58999999999632 1246999999999999999999999999999999999999996 9999999999988776543
Q ss_pred ---h-cceEEEccCC--cCc-cccHHHHHhcCCC--CCCCHH----HHHHHHHHcCHHHHHHhCCCCccc-ccCCCCCCh
Q 017091 207 ---R-EKIGFVGQEP--QLL-QMDIKSNIMYGCP--KDVKNE----DIEWAAKQAYVHEFILSLPCGYET-LVDDDLLSG 272 (377)
Q Consensus 207 ---r-~~i~~v~Q~~--~l~-~~tv~eni~~~~~--~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~LSg 272 (377)
| +.|+||||++ .++ ..|+.+|+..... .....+ .+.+.++.+++. ...+. ...+++|||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~-------~~~~~~~~~p~~LSg 164 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMP-------EARKRMKMYPHEFSG 164 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-------ChHHHhcCCcccCCH
Confidence 3 4799999998 354 4788888754211 111221 222333333332 11111 112478999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEE
Q 017091 273 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 351 (377)
Q Consensus 273 Gq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~ 351 (377)
||||||+|||||+.+|++||+||||++||+.++..+.+.|++++++ .|.|+|+||||++.+.. ||+|++|++|+|++
T Consensus 165 G~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~g~til~iTHdl~~~~~~~Dri~vm~~G~ive 242 (330)
T PRK09473 165 GMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE--FNTAIIMITHDLGVVAGICDKVLVMYAGRTME 242 (330)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999753 47899999999999975 99999999999999
Q ss_pred EcChHHHhhc-CHHHHHH
Q 017091 352 VGNHAELLHK-GRLYAKL 368 (377)
Q Consensus 352 ~g~~~~l~~~-~~~~~~~ 368 (377)
.|++++++++ ...|.+.
T Consensus 243 ~g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 243 YGNARDVFYQPSHPYSIG 260 (330)
T ss_pred ECCHHHHHhCCCCHHHHH
Confidence 9999999875 3345543
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=367.21 Aligned_cols=225 Identities=27% Similarity=0.405 Sum_probs=183.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC---CCeEEECCEeCCCC-----C
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDL-----D 202 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~-----~ 202 (377)
.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... .
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999974 36999999999999999999999999999999999999986 49999999988543 2
Q ss_pred HHHHhcceEEEccCCcCcc-ccHHHHHhcCCCCC-------------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCC
Q 017091 203 IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKD-------------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 268 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 268 (377)
...+++.++|+||++.+|. .|+.||+.++.... ....++.++++..++.+..+..+ .
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~ 151 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV---------S 151 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc---------c
Confidence 2445678999999998875 79999998753110 01123344555555544444333 5
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 347 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G 347 (377)
+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.++ .|.|||++|||++.+.. ||+|++|++|
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN--DGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 79999999999999999999999999999999999999999999998642 37899999999998765 9999999999
Q ss_pred EEEEEcChHHHhhcCHHHHHHHHH
Q 017091 348 RIIEVGNHAELLHKGRLYAKLVKR 371 (377)
Q Consensus 348 ~i~~~g~~~~l~~~~~~~~~~~~~ 371 (377)
++++.|+++++ . .....++|..
T Consensus 230 ~i~~~g~~~~~-~-~~~~~~~~~~ 251 (262)
T PRK09984 230 HVFYDGSSQQF-D-NERFDHLYRS 251 (262)
T ss_pred EEEEeCCHHHh-c-cHHHHHHHhh
Confidence 99999999986 2 2334555543
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-49 Score=361.42 Aligned_cols=212 Identities=25% Similarity=0.425 Sum_probs=175.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4899999999974 3699999999999999999999999999999999999999999999999998877766677889
Q ss_pred EEEccCCcCccccHHHHHhcCCC--CC-CCHHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCP--KD-VKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~--~~-~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
+|+||++.+|+.|++||+.++.. .. ...+.+.+.++..++. ...+ ....+|||||+||++|||||+.
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILT---------KNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhc---------CCcccCCHHHHHHHHHHHHHhc
Confidence 99999999888899999976421 11 1122233344444432 1222 1236799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEe-CCEEEEEcChH
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID-DGRIIEVGNHA 356 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~-~G~i~~~g~~~ 356 (377)
+|+++||||||++||+.+.+.+.+.|.++.++ .|.|||++||+++.+..||++++|+ ++..+++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVRE--QNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999998642 3789999999999987799999995 56666777764
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=354.07 Aligned_cols=203 Identities=33% Similarity=0.552 Sum_probs=174.1
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
+.++++|++++|++. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999753 2369999999999999999999999999999999999999999999999999877776677888
Q ss_pred eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 017091 210 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 210 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 289 (377)
|+|+||++.+|+.|++||+.+.. ....+++.+.++ ++ .....|||||+||++||||++.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~-------~~---------~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR-------VS---------EGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh-------cc---------CCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999889999997642 122222222221 11 1236799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcCh
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~ 355 (377)
++||||||++||+.++..+.+.|+++. +|+|+|++||+++.+..||++++|++|++++.|++
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEF----TNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999873 37899999999999877999999999999988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=363.58 Aligned_cols=221 Identities=32% Similarity=0.545 Sum_probs=178.8
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCC--C
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--L 201 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~ 201 (377)
|+.|+++||++.|++. ++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .
T Consensus 1 ~~~l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 1 MGKISVKDLDLFYGDF---QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred CCeEEEEEEEEEECCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4568999999999743 699999999999999999999999999999999999863 69999999999864 2
Q ss_pred CHHHHhcceEEEccCCcCccccHHHHHhcCCC-CCC-C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 017091 202 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 275 (377)
Q Consensus 202 ~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~-~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~ 275 (377)
+...+|+.++|+||++.+|+.|++||+.++.. ... . .+.+.++++..++.+.+... ......+||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-----~~~~~~~LS~G~~ 152 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDR-----LKKSALGLSGGQQ 152 (250)
T ss_pred chHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHH-----HhcCCCCCCHHHH
Confidence 34456788999999998888999999987521 111 1 12223333344332111100 0111257999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
||++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|||++||+++.+.. ||++++|++|++++.|+
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK----KDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999884 26799999999998865 99999999999999999
Q ss_pred hHHHhhc
Q 017091 355 HAELLHK 361 (377)
Q Consensus 355 ~~~l~~~ 361 (377)
++++...
T Consensus 229 ~~~~~~~ 235 (250)
T PRK14240 229 TVDLFTN 235 (250)
T ss_pred HHHHHhC
Confidence 9998754
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-48 Score=367.22 Aligned_cols=219 Identities=28% Similarity=0.459 Sum_probs=178.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCC--CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~~ 203 (377)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 13 ~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 13 IISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred eEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 5999999999974 359999999999999999999999999999999999987 699999999998753 345
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCCC-CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~-~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
..+++.++|+||++.+|..|++||+.++.... .. ++.+.++++.+++...+... . .....+||||||||++
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~--~~~~~~LS~G~~qrl~ 164 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDK---L--NESGYSLSGGQQQRLC 164 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhh---h--CCCcccCCHHHHHHHH
Confidence 56778899999999988779999998753211 11 12223334433332111110 0 1112579999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC-----------C
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-----------G 347 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~-----------G 347 (377)
|||||+.+|++|||||||++||+.++..+.+.|++++ ++.|||++||+++.+.. ||++++|++ |
T Consensus 165 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~----~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g 240 (269)
T PRK14259 165 IARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK----KNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVG 240 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccc
Confidence 9999999999999999999999999999999999884 25799999999999865 999999996 6
Q ss_pred EEEEEcChHHHhhc
Q 017091 348 RIIEVGNHAELLHK 361 (377)
Q Consensus 348 ~i~~~g~~~~l~~~ 361 (377)
++++.|++++++..
T Consensus 241 ~~~~~~~~~~~~~~ 254 (269)
T PRK14259 241 YLVEFNETKKIFNS 254 (269)
T ss_pred eEEEeCCHHHHHhC
Confidence 79999999999764
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=340.73 Aligned_cols=217 Identities=32% Similarity=0.475 Sum_probs=189.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC---------
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--------- 201 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~--------- 201 (377)
.++++|+.++|+.. .+|++||++-++|+.+.|+|.|||||||+|+||.=+..|+.|.|.++|..+.-.
T Consensus 6 ~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 58999999999864 599999999999999999999999999999999999999999999999877421
Q ss_pred -C---HHHHhcceEEEccCCcCc-cccHHHHHhcC------CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCC
Q 017091 202 -D---IRWLREKIGFVGQEPQLL-QMDIKSNIMYG------CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLL 270 (377)
Q Consensus 202 -~---~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L 270 (377)
+ ...+|.+.|+|||+.+|+ .+|+.||+.-+ .+.....++....+.++++.+-.+.+| ..|
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP---------~~L 153 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP---------AHL 153 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc---------ccc
Confidence 1 235688899999999999 69999998643 222112233444567778777777777 569
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 271 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 271 SgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
||||+||++|||||+.+|+++|+|||||+|||+-.-++++.++++.+ .|+|.++|||.|.+++. +.+|++|++|.|
T Consensus 154 SGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe---EgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 154 SGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE---EGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred CchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH---hCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 99999999999999999999999999999999999999999999975 49999999999999987 899999999999
Q ss_pred EEEcChHHHhhcC
Q 017091 350 IEVGNHAELLHKG 362 (377)
Q Consensus 350 ~~~g~~~~l~~~~ 362 (377)
-++|+|++++.+.
T Consensus 231 EE~G~P~qvf~nP 243 (256)
T COG4598 231 EEEGPPEQVFGNP 243 (256)
T ss_pred cccCChHHHhcCC
Confidence 9999999999764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=366.30 Aligned_cols=219 Identities=29% Similarity=0.463 Sum_probs=176.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~--~~ 203 (377)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++... +.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5999999999974 369999999999999999999999999999999999865 7999999999998642 23
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|+||++.+|+.|++||+.++... .. .. +.+..+++..++...+.. .......+||||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LSgGq~qr 172 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD-----RLHSSALSLSGGQQQR 172 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHH-----HHhcCcccCCHHHHHH
Confidence 4567789999999998888999999865211 11 11 112223333332110000 0011236799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.++..+.+.|+++++ +.|||++||+++.+.. ||+|++|++|++++.|+++
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE----EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc----CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999842 5799999999998865 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++.++
T Consensus 249 ~~~~~ 253 (268)
T PRK14248 249 QIFTS 253 (268)
T ss_pred HHHhC
Confidence 98765
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-48 Score=364.20 Aligned_cols=219 Identities=29% Similarity=0.454 Sum_probs=178.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC--C---CCCeEEECCEeCCC--CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTD--LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--p---~~G~I~i~g~~i~~--~~~ 203 (377)
.|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5999999999974 369999999999999999999999999999999999997 3 69999999999853 234
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-C-CCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~-~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|+||++.+|..|++||+.++... . ...+ ++.++++..++.+.+... + .....+||||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---l--~~~~~~LS~Gq~qr 163 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDR---L--HTQALSLSGGQQQR 163 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhh---h--hCCcccCCHHHHHH
Confidence 4567789999999998878999999875211 1 1111 122233333332211100 0 11235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|+++||||||++||+.++..+.+.|.+++ +++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK----EKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh----cCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999984 25799999999999865 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
+++++
T Consensus 240 ~~~~~ 244 (259)
T PRK14274 240 KMFSN 244 (259)
T ss_pred HHhhC
Confidence 98764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=354.76 Aligned_cols=205 Identities=32% Similarity=0.526 Sum_probs=175.3
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
++++||++.|+. .++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ..++.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 468999999962 568999999999999999999999999999999999999999999999986543 3567899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~~-~tv~eni~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|+||++.+|. .|+.||+.++.... ....++.++++..++.+..++.| .+||||||||++||||++
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~ 144 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP---------EQLSGGQRQRVALARCLV 144 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc---------ccCCHHHHHHHHHHHHHh
Confidence 9999998885 79999997642111 11234555677777776666655 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
.+|+++||||||++||+.++..+.+.|+++.++ .+.|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALVKQLCSE--RQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998642 37899999999999865 99999999999998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=366.65 Aligned_cols=216 Identities=27% Similarity=0.362 Sum_probs=181.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC--------CCeEEECCEeCCCCCH
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--------DGQIYIDGFPLTDLDI 203 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~--------~G~I~i~g~~i~~~~~ 203 (377)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999964 36999999999999999999999999999999999999998 9999999999877666
Q ss_pred HHHhcceEEEccCCc-CccccHHHHHhcCCCCC------CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChH
Q 017091 204 RWLREKIGFVGQEPQ-LLQMDIKSNIMYGCPKD------VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 273 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~-l~~~tv~eni~~~~~~~------~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgG 273 (377)
..+++.++|+||++. ++..|++||+.++.... .. .+.+.++++..++.+..++. ..+||||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG 149 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD---------VTTLSGG 149 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC---------cccCCHH
Confidence 667778999999986 45789999998753111 01 11233344445544433322 2679999
Q ss_pred HHHHHHHHHHHc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEE
Q 017091 274 QKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVV 343 (377)
Q Consensus 274 q~QRv~iAral~---------~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~ 343 (377)
|||||+|||||+ .+|++|||||||++||+.+++.+.+.|+++.++ .|.|||+||||++.+.. ||++++
T Consensus 150 ~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 150 ELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD--WNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEE
Confidence 999999999999 599999999999999999999999999998642 37899999999999865 999999
Q ss_pred EeCCEEEEEcChHHHhhc
Q 017091 344 IDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 344 l~~G~i~~~g~~~~l~~~ 361 (377)
|++|++++.|+++++.+.
T Consensus 228 l~~G~i~~~g~~~~~~~~ 245 (272)
T PRK13547 228 LADGAIVAHGAPADVLTP 245 (272)
T ss_pred EECCeEEEecCHHHHcCH
Confidence 999999999999988653
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-49 Score=335.74 Aligned_cols=211 Identities=30% Similarity=0.439 Sum_probs=181.8
Q ss_pred cEEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH---HH
Q 017091 131 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WL 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~ 206 (377)
.|+++++++..+... ..++|++|+|.|++||.+|||||||||||||+-+++|+.+|++|+|.+.|+++..++.. .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 489999999886542 34799999999999999999999999999999999999999999999999999988754 33
Q ss_pred h-cceEEEccCCcCc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 207 R-EKIGFVGQEPQLL-QMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 207 r-~~i~~v~Q~~~l~-~~tv~eni~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
| +++|||||..+|. ++|..||+..+.... .......+.++++++.+.+..+| .+|||||+|||+
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP---------~qLSGGEQQRVA 156 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP---------AQLSGGEQQRVA 156 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc---------cccCchHHHHHH
Confidence 3 6799999999887 799999998754211 11222344566666666666666 789999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEE
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 352 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~ 352 (377)
|||||+..|+||+.||||.+||..+-++|.+++..+.++ .|.|.|+||||+..+.+|||++.|.+|+|+++
T Consensus 157 iARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre--~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 157 LARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE--RGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh--cCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999998875 69999999999999999999999999999753
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=363.18 Aligned_cols=219 Identities=31% Similarity=0.498 Sum_probs=176.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC---CCC--CCCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL---YEP--SDGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl---~~p--~~G~I~i~g~~i~~~--~~ 203 (377)
+|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5899999999974 3599999999999999999999999999999999997 455 589999999998653 23
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|+||++.+|..|+.||+.++... .. .. +.+.++++.+++.+.+... ......+||||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LS~G~~qr 154 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDK-----LKESAFALSGGQQQR 154 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhh-----hhCCcccCCHHHHHH
Confidence 4567789999999998888999999864211 11 11 1222333333332111100 011235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~ 230 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK----KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTK 230 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999984 36899999999999865 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++.++
T Consensus 231 ~~~~~ 235 (250)
T PRK14245 231 KIFTN 235 (250)
T ss_pred HHhcC
Confidence 99765
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=365.44 Aligned_cols=227 Identities=30% Similarity=0.471 Sum_probs=186.5
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-C----CCCeEEECCEeCCCCCHHH
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-P----SDGQIYIDGFPLTDLDIRW 205 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p----~~G~I~i~g~~i~~~~~~~ 205 (377)
++++|++.+|.... ...+++||||+|++||++||||+|||||||+.+.|+|+++ | .+|+|.++|+++..++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 68999999997532 2469999999999999999999999999999999999998 4 5799999999998888764
Q ss_pred H---h-cceEEEccCCcC-c--cccHHHHHhcCCC--CCC-C----HHHHHHHHHHcCHHH---HHHhCCCCcccccCCC
Q 017091 206 L---R-EKIGFVGQEPQL-L--QMDIKSNIMYGCP--KDV-K----NEDIEWAAKQAYVHE---FILSLPCGYETLVDDD 268 (377)
Q Consensus 206 ~---r-~~i~~v~Q~~~l-~--~~tv~eni~~~~~--~~~-~----~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~ 268 (377)
+ | +.|+||||+|.- + -.||.+.+.-... ... . .++..+.++.+++.+ .++.+| +
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------h 152 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------H 152 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC---------c
Confidence 3 3 569999999853 2 3566665532211 111 1 234555666666642 456666 7
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 347 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G 347 (377)
+|||||||||.||.||+.+|++||.||||++||...+.+|+++|++++++ .|.|+|+||||+..+.. ||||+||..|
T Consensus 153 elSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e--~~~aiilITHDl~vva~~aDri~VMYaG 230 (316)
T COG0444 153 ELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQRE--KGTALILITHDLGVVAEIADRVAVMYAG 230 (316)
T ss_pred ccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence 89999999999999999999999999999999999999999999999874 68999999999999876 9999999999
Q ss_pred EEEEEcChHHHhhcC-HHHHHHH
Q 017091 348 RIIEVGNHAELLHKG-RLYAKLV 369 (377)
Q Consensus 348 ~i~~~g~~~~l~~~~-~~~~~~~ 369 (377)
+|+|.|+.++++.+. ..|.+.+
T Consensus 231 ~iVE~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 231 RIVEEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred EEEEeCCHHHHhcCCCChHHHHH
Confidence 999999999999863 3465543
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=363.61 Aligned_cols=219 Identities=31% Similarity=0.480 Sum_probs=176.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCC--CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~~ 203 (377)
.|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999974 369999999999999999999999999999999999997 489999999998753 233
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|++|++.+|+.|++||+.++... .. .. +.+..+++..++..... ........+||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-----DNLDRNAQAFSGGQQQR 155 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-----HHhccChhhCCHHHHHH
Confidence 4567789999999998888999999865211 11 11 12222333333311000 00011235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|+++||||||++||+.+++.+.+.|+++. ++.|||+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 231 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK----HQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTE 231 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH----cCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999884 25799999999999865 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++...
T Consensus 232 ~~~~~ 236 (251)
T PRK14251 232 EMFIA 236 (251)
T ss_pred HHHhC
Confidence 98754
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=389.36 Aligned_cols=230 Identities=33% Similarity=0.486 Sum_probs=192.9
Q ss_pred cEEEEEEEEEcCCC--------CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeC--CC
Q 017091 131 HVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL--TD 200 (377)
Q Consensus 131 ~i~~~~v~~~y~~~--------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i--~~ 200 (377)
.++++||++.|... ....+++||||++++||++||||+||||||||.|+|+|+++|++|+|.++|.++ +.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 57899999999741 124689999999999999999999999999999999999999999999999872 22
Q ss_pred CCHHHHhcceEEEccCCcC--c-cccHHHHHhcCCC--C----CCCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCC
Q 017091 201 LDIRWLREKIGFVGQEPQL--L-QMDIKSNIMYGCP--K----DVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLL 270 (377)
Q Consensus 201 ~~~~~~r~~i~~v~Q~~~l--~-~~tv~eni~~~~~--~----~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~L 270 (377)
-.....|+++-+|||||+- - ..||.++|..... . ....+++.+.++.+++.+ +++++| ++|
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP---------~el 430 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP---------HEL 430 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc---------hhc
Confidence 2234567889999999963 2 5899999975321 1 111234556677777754 566666 789
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 271 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 271 SgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
||||||||||||||+.+|++|++|||||+||+..+..+.++|++++++ .|.|.|+||||+..++. ||||++|++|+|
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e--~g~t~lfISHDl~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE--LGLTYLFISHDLAVVRYIADRVAVMYDGRI 508 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHH--hCCEEEEEeCCHHHHHhhCceEEEEECCeE
Confidence 999999999999999999999999999999999999999999999875 58999999999999987 999999999999
Q ss_pred EEEcChHHHhhc-CHHHHHHHHH
Q 017091 350 IEVGNHAELLHK-GRLYAKLVKR 371 (377)
Q Consensus 350 ~~~g~~~~l~~~-~~~~~~~~~~ 371 (377)
++.|+.+++++. ...|.+.+..
T Consensus 509 VE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 509 VEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred EEeCCHHHHhcCCCChHHHHHHH
Confidence 999999999887 4567765543
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=363.63 Aligned_cols=205 Identities=30% Similarity=0.448 Sum_probs=171.2
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999974 3699999999999999999999999999999999999999999999999987642 24589
Q ss_pred EEccCCcCcc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~~-~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|++|++.++. .|++||+.++.. .... .+++.+.++..++.+..++.+ .+||||||||++|||||+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrl~laral~ 144 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYI---------WQLSGGQRQRVGIARALA 144 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999998885 799999986421 1111 122344455555544443333 679999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe--CCEEEEEcCh
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID--DGRIIEVGNH 355 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~--~G~i~~~g~~ 355 (377)
.+|++|||||||++||+.++..+.+.|+++.+. .|+|||++|||++.+.. ||+|++|+ +|++++.++.
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE--TGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999988532 37899999999999865 99999998 5999998754
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=365.07 Aligned_cols=221 Identities=29% Similarity=0.423 Sum_probs=179.8
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCC--CC
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LD 202 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~ 202 (377)
..|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 36999999999964 369999999999999999999999999999999999996 589999999999853 23
Q ss_pred HHHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
...+++.|+|+||++.+|..|++||+.++... .. .. +.+.++++..++.+.+... ......+|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-----~~~~~~~LS~G~~q 170 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDD-----LHKSALTLSGGQQQ 170 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhh-----hcCCcccCCHHHHH
Confidence 44567789999999998888999999875321 11 11 1223334444432211110 01123679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
|++|||||+.+|++|||||||++||+.++..+.+.|.++. ++.|||++||+++.+.. ||++++|++|++++.|++
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~ 246 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK----KNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKT 246 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999884 25799999999999865 999999999999999999
Q ss_pred HHHhhcC
Q 017091 356 AELLHKG 362 (377)
Q Consensus 356 ~~l~~~~ 362 (377)
+++....
T Consensus 247 ~~~~~~~ 253 (267)
T PRK14237 247 RNIFTNP 253 (267)
T ss_pred HHHhcCC
Confidence 9987643
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=361.78 Aligned_cols=217 Identities=24% Similarity=0.292 Sum_probs=172.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC--CCCCCeEEECCEeCCCCCHHHH-hc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRWL-RE 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~g~~i~~~~~~~~-r~ 208 (377)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999974 36999999999999999999999999999999999994 7999999999999877665443 44
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCC--------CCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCC-CCChHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPKD--------VKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDD-LLSGGQKQR 277 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~-~LSgGq~QR 277 (377)
.++|+||++.+| ..|++||+.+..... ....+.. ..+.+.++.+.... ....... .||||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 152 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-----KLLKAKLALLGMDEEFLNRSVNEGFSGGEKKR 152 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH-----HHHHHHHHHcCCchhhcccccccCcCHHHHHH
Confidence 599999999888 469999987532100 0111100 11223333322110 0011123 499999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh--cCeEEEEeCCEEEEEcCh
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~--~d~v~~l~~G~i~~~g~~ 355 (377)
++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +|.|||++|||++.+.. ||++++|++|++++.|++
T Consensus 153 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE---PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229 (243)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH---CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999853 37899999999999864 799999999999999998
Q ss_pred HHHh
Q 017091 356 AELL 359 (377)
Q Consensus 356 ~~l~ 359 (377)
+++.
T Consensus 230 ~~~~ 233 (243)
T TIGR01978 230 ELAK 233 (243)
T ss_pred HHhc
Confidence 7654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=361.86 Aligned_cols=219 Identities=33% Similarity=0.473 Sum_probs=176.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC--CC---CCCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EP---SDGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p---~~G~I~i~g~~i~~~--~~ 203 (377)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+. +| ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999974 36999999999999999999999999999999999995 36 599999999988542 23
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCC-CCC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|+||++.+|+.|++||+.++.. ... .. +++..+++..++.+.+... ......+||||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LS~G~~qr 156 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDR-----LHDSALGLSGGQQQR 156 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHH-----HhcCcccCCHHHHHH
Confidence 456778999999999888999999986421 011 11 1222334444332111100 011235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|||++||+++.+.. ||+|++|++|++++.|+++
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 232 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK----DDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTK 232 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh----hCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999884 25799999999998865 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++++.
T Consensus 233 ~~~~~ 237 (252)
T PRK14239 233 QMFMN 237 (252)
T ss_pred HHHhC
Confidence 98765
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=362.91 Aligned_cols=215 Identities=29% Similarity=0.478 Sum_probs=177.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCC--CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~~ 203 (377)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999974 359999999999999999999999999999999999997 699999999998853 234
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CCCHH-H----HHHHHHHcC----HHHHHHhCCCCcccccCCCCCChH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVKNE-D----IEWAAKQAY----VHEFILSLPCGYETLVDDDLLSGG 273 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~-~----~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~LSgG 273 (377)
..+++.++|+||++.+|..|++||+.++... ....+ . +.++++..+ +.+.++. ....||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~---------~~~~LSgG 171 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHD---------NAYGLSGG 171 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhc---------CcccCCHH
Confidence 4567789999999998888999999864211 11111 1 122222222 1111111 12579999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEE
Q 017091 274 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV 352 (377)
Q Consensus 274 q~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~ 352 (377)
||||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++|||++.+.. ||++++|++|++++.
T Consensus 172 e~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 172 QQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK----KDYSIIIVTHNMQQAARISDKTAFFLNGYVNEY 247 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH----cCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999885 25799999999999865 999999999999999
Q ss_pred cChHHHhhc
Q 017091 353 GNHAELLHK 361 (377)
Q Consensus 353 g~~~~l~~~ 361 (377)
|+++++..+
T Consensus 248 g~~~~~~~~ 256 (271)
T PRK14238 248 DDTDKIFSN 256 (271)
T ss_pred CCHHHHHcC
Confidence 999998765
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-48 Score=360.77 Aligned_cols=220 Identities=30% Similarity=0.489 Sum_probs=178.8
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCC-CCCH
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLT-DLDI 203 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~-~~~~ 203 (377)
..++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+.
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 78 (249)
T PRK14253 2 NKFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78 (249)
T ss_pred CeEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccch
Confidence 35899999999974 3699999999999999999999999999999999999986 5999999999885 3345
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CCC-H----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVK-N----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~-~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|+||++.+|..|+.||+.++... ... . +++.++++..++.+.+.. .......+||||||||
T Consensus 79 ~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKD-----RLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhH-----HhhcCcccCCHHHHHH
Confidence 5667889999999998889999999875211 111 1 122233333333221110 0011125799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
|+|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~ 229 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK----NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQ 229 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999852 4799999999999876 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++...
T Consensus 230 ~~~~~ 234 (249)
T PRK14253 230 VIFSN 234 (249)
T ss_pred HHHcC
Confidence 88653
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=344.49 Aligned_cols=178 Identities=36% Similarity=0.657 Sum_probs=161.6
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 4789999999753 23699999999999999999999999999999999999999999999999987654 455678899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 291 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~il 291 (377)
|+||++.+|+.|++||+ + ..||||||||++||||++.+|++|
T Consensus 79 ~~~q~~~~~~~tv~~~i-----------------------------~---------~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL-----------------------------G---------RRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred EEccCCeeecccHHHhh-----------------------------c---------ccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998888999987 1 569999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEc
Q 017091 292 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g 353 (377)
||||||++||+.+++.+.+.|+++. ++.|+|++||+++.+..||++++|++|++++.|
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVL----KDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999883 368999999999998779999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-48 Score=360.39 Aligned_cols=219 Identities=31% Similarity=0.499 Sum_probs=178.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~--~~ 203 (377)
.|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999974 3699999999999999999999999999999999999875 799999999998643 23
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
...++.++|+||++.+|+.|++||+.++... .. .. +++.++++.+++.+.+... .......||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LS~G~~qr 155 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDD-----LKKSALKLSGGQQQR 155 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhH-----hhCCcccCCHHHHHH
Confidence 4567789999999998889999999875211 11 11 1223344444432111100 011236799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++||||++.+|++|||||||++||+.++..+.+.|+++.+ +.|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~----~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK----EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTE 231 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHH
Confidence 9999999999999999999999999999999999998853 4799999999999875 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++...
T Consensus 232 ~~~~~ 236 (251)
T PRK14270 232 KIFLE 236 (251)
T ss_pred HHhcC
Confidence 98765
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-48 Score=362.13 Aligned_cols=221 Identities=27% Similarity=0.381 Sum_probs=178.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEe-----CCCCCHHH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-----LTDLDIRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~-----i~~~~~~~ 205 (377)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|++ +...+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999974 369999999999999999999999999999999999999999999999998 76655433
Q ss_pred ----HhcceEEEccCCc--Cc-cccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHHH
Q 017091 206 ----LREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQK 275 (377)
Q Consensus 206 ----~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~LSgGq~ 275 (377)
.++.++|+||++. ++ ..|+.+|+.+... ......+.. ..+.++++.++... .......+||||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERVEIDAARIDDLPTTFSGGMQ 157 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHcCCChhHHhCCCccCCHHHH
Confidence 3557999999984 33 4688999864210 001111111 11344555544321 11222468999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|.|||++||+++.+.. ||+|++|++|++++.|+
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE--LGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999988642 37899999999999975 99999999999999999
Q ss_pred hHHHhhc
Q 017091 355 HAELLHK 361 (377)
Q Consensus 355 ~~~l~~~ 361 (377)
++++..+
T Consensus 236 ~~~~~~~ 242 (258)
T PRK11701 236 TDQVLDD 242 (258)
T ss_pred HHHHhcC
Confidence 9998754
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=342.14 Aligned_cols=173 Identities=43% Similarity=0.731 Sum_probs=160.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++. ..++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999753 246999999999999999999999999999999999999999999999999998777777788899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 291 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~il 291 (377)
|++|++.+|+.|++||+ ||||||||++|||||+.+|++|
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988888999987 7999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEE
Q 017091 292 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 349 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i 349 (377)
||||||++||+.++..+.+.|+++++ +|+|+|++||+++.+..||++++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKA---AGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998853 37899999999998877999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=359.54 Aligned_cols=219 Identities=26% Similarity=0.455 Sum_probs=178.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC-----CCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-----~G~I~i~g~~i~~~--~~ 203 (377)
.|+++||+|+|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999974 35999999999999999999999999999999999999997 69999999988542 33
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CCC-H----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVK-N----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~-~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|+||++.+|+.|++||+.++... ... . +.+..+++..++.+.+..+ ......+||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-----~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDN-----LHKSGLALSGGQQQR 155 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhH-----hhCCcccCCHHHHHH
Confidence 4567889999999998888999999875311 111 1 1222233333332221110 011236799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~ 231 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK----QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTG 231 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHH
Confidence 999999999999999999999999999999999999883 36899999999999876 8999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++...
T Consensus 232 ~~~~~ 236 (251)
T PRK14249 232 EIFSR 236 (251)
T ss_pred HHHhC
Confidence 98764
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-48 Score=378.50 Aligned_cols=211 Identities=32% Similarity=0.504 Sum_probs=176.9
Q ss_pred EEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC----HHHHhcceE
Q 017091 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLREKIG 211 (377)
Q Consensus 136 ~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~~r~~i~ 211 (377)
||+++|++. .+ |+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+ ....++.++
T Consensus 4 ~l~~~~~~~----~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDF----SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCE----EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 899999742 35 999999999999999999999999999999999999999999999986432 224567899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCCCC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPKDVK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
|+||++.+| ..|++||+.++...... .+++.+.++..++.++.++.| .+|||||||||+|||||+.+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGqkqRvalAraL~~~ 149 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP---------GRLSGGEKQRVAIGRALLSS 149 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHHcC
Confidence 999999988 47999999886421111 122444555555555444443 67999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|++|||||||++||+.+++.+.+.|+++.++ .|+|+|++|||++.+.. ||++++|++|++++.|+++++....
T Consensus 150 p~lllLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 150 PRLLLMDEPLAALDDPRKYEILPYLERLHAE--FGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 9999999999999999999999999998643 37899999999999865 9999999999999999999987654
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=358.77 Aligned_cols=214 Identities=30% Similarity=0.492 Sum_probs=181.4
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++
T Consensus 1 l~~~~l~~~~~~~---~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGGF---VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCCe---eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 4789999999753 69999999999999999999999999999999999999999999999999876543 256899
Q ss_pred EEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|++|++.+| ..|+.||+.++.. .... .+++..+++..++.++++..+ ..||||||||++|||||+
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrl~laral~ 146 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP---------SQLSGGQQQRVAIARALV 146 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHHHh
Confidence 999999988 4699999976421 1111 223344555556655555444 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
.+|+++||||||++||+.+++.+.+.|++++++ .|+|||++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~--~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKE--LGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999999999998642 37899999999999865 999999999999999999888764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-48 Score=363.48 Aligned_cols=232 Identities=28% Similarity=0.418 Sum_probs=182.9
Q ss_pred cEEEEEEEEEcCCC------CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH-
Q 017091 131 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI- 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~- 203 (377)
.|+++||+|.|++. .++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 58999999999731 02469999999999999999999999999999999999999999999999998876554
Q ss_pred --HHHhcceEEEccCCc--Cc-cccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHH
Q 017091 204 --RWLREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQK 275 (377)
Q Consensus 204 --~~~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~LSgGq~ 275 (377)
..+++.++|+||++. ++ ..|+.+|+.+... ...... .....+.++++.+... .........||||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~ 157 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRAVDLDDSVLDKRPPQLSGGQL 157 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHcCCChhHhhCCCccCChHHH
Confidence 245778999999983 44 5799999864311 011111 1111223344433211 001122367999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
||++|||||+.+|++|||||||++||+.++..+.+.|+++.++ .+.|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 158 qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 158 QRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ--FGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH--cCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 9999999999999999999999999999999999999998642 37899999999999975 99999999999999999
Q ss_pred hHHHhhcCHHHHHHH
Q 017091 355 HAELLHKGRLYAKLV 369 (377)
Q Consensus 355 ~~~l~~~~~~~~~~~ 369 (377)
++++......|...+
T Consensus 236 ~~~~~~~~~~~~~~~ 250 (268)
T PRK10419 236 VGDKLTFSSPAGRVL 250 (268)
T ss_pred hhhccCCCCHHHHHH
Confidence 999886655554444
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-48 Score=360.25 Aligned_cols=219 Identities=31% Similarity=0.487 Sum_probs=177.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~--~~ 203 (377)
.|+++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 5899999999974 3699999999999999999999999999999999999984 899999999988642 23
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|+||++.+|..|++||+.++... .. .. +.+..+++..++.+.+..+ ......+||||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LS~Gq~qr 154 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSE-----LNKPGTRLSGGQQQR 154 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHH-----HhCChhhcCHHHHHH
Confidence 3557789999999998889999999864211 11 11 1223333433332211100 011235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.++..+.+.|.++. +++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 155 ~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14262 155 LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS----ENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTR 230 (250)
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh----cCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999884 25799999999998765 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++.+.
T Consensus 231 ~~~~~ 235 (250)
T PRK14262 231 EIVER 235 (250)
T ss_pred HHHhC
Confidence 98764
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-48 Score=362.27 Aligned_cols=219 Identities=30% Similarity=0.479 Sum_probs=176.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCC--CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~~~ 203 (377)
.++++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 4 ~l~i~~v~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGSF---HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECCE---eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 48999999999753 599999999999999999999999999999999999974 79999999998853 334
Q ss_pred HHHhcceEEEccCCcCcc-ccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~-~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
..+++.++|++|++.+|. .|++||+.++... .. .. +.+.++++..++.+.+.. .......+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LS~G~~q 155 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD-----RLDKPGGGLSGGQQQ 155 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-----HhhCCcccCCHHHHH
Confidence 456788999999998885 7999999764211 11 11 122333444443211110 001123679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe------CCEE
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID------DGRI 349 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~------~G~i 349 (377)
||+|||||+.+|++|||||||++||+.++..+.+.|++++ +++|||++||+++.+.. ||+|++|+ +|++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i 231 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK----QDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRL 231 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceE
Confidence 9999999999999999999999999999999999999984 25799999999999865 99999997 8999
Q ss_pred EEEcChHHHhhc
Q 017091 350 IEVGNHAELLHK 361 (377)
Q Consensus 350 ~~~g~~~~l~~~ 361 (377)
++.|++++++..
T Consensus 232 ~~~~~~~~~~~~ 243 (258)
T PRK14241 232 VEIDDTEKIFSN 243 (258)
T ss_pred EecCCHHHHHhC
Confidence 999999998764
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-48 Score=340.44 Aligned_cols=223 Identities=26% Similarity=0.416 Sum_probs=191.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+.+|++++..++ .+|+++||++++||++||+||||||||||+|.|+|.+.|++|++.++|.+++.+++.++.++-
T Consensus 1 mi~a~nls~~~~Gr---~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~r 77 (259)
T COG4559 1 MIRAENLSYSLAGR---RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHR 77 (259)
T ss_pred CeeeeeeEEEeecc---eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHh
Confidence 48899999998754 699999999999999999999999999999999999999999999999999999999998899
Q ss_pred EEEccCCcC-ccccHHHHHhcCCCCCCC-----HHH--HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 211 GFVGQEPQL-LQMDIKSNIMYGCPKDVK-----NED--IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 211 ~~v~Q~~~l-~~~tv~eni~~~~~~~~~-----~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
+.+||+..+ |+.||+|.+.+|..+... +++ ..+++.++++..+..+.- ..|||||||||.+||
T Consensus 78 aVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y---------~~LSGGEqQRVqlAR 148 (259)
T COG4559 78 AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY---------RTLSGGEQQRVQLAR 148 (259)
T ss_pred hhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch---------hhcCchHHHHHHHHH
Confidence 999999987 799999999998643211 222 345666666665544322 469999999999999
Q ss_pred HHcC------CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcCh
Q 017091 283 AILR------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 283 al~~------~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~ 355 (377)
.|++ ++++|+||||||+||...+..++++.+++.+ .|..|+.|-||++... +||||++|++|+++..|+|
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~---~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p 225 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR---EGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSP 225 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHh---cCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCH
Confidence 9985 4569999999999999999999999999975 4789999999999985 5999999999999999999
Q ss_pred HHHhhcCHHHHHHH
Q 017091 356 AELLHKGRLYAKLV 369 (377)
Q Consensus 356 ~~l~~~~~~~~~~~ 369 (377)
+++++.+. .++.|
T Consensus 226 ~~vlt~Et-l~~vy 238 (259)
T COG4559 226 QDVLTDET-LERVY 238 (259)
T ss_pred HHhcCHHH-HHHHh
Confidence 99987543 34443
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-48 Score=354.06 Aligned_cols=207 Identities=27% Similarity=0.423 Sum_probs=176.5
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999974 36999999999999999999999999999999999999999999999999875321 24799
Q ss_pred EEccCCcCc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 289 (377)
|+||++.++ ..|++||+.++.. ......++.++++..++.++.+..+ ..||||||||++||||++.+|+
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~~rv~laral~~~p~ 144 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKA---------KQFSLGMKQRLGIAIALLNHPK 144 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhH---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 999999887 4799999975321 1123445556666666665554433 5799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHH
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~ 357 (377)
+|||||||++||+.+++.+.+.|+++++ .|+|+|++|||++.+.. ||++++|++|++++.|++.+
T Consensus 145 llllDEP~~~LD~~~~~~l~~~L~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 145 LLILDEPTNGLDPIGIQELRELIRSFPE---QGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EEEECCCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999999853 37899999999999865 99999999999999998765
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=359.11 Aligned_cols=219 Identities=29% Similarity=0.465 Sum_probs=178.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC--C---CCCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--p---~~G~I~i~g~~i~~~--~~ 203 (377)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++... ..
T Consensus 4 ~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 4 KVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred EEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 5899999999974 369999999999999999999999999999999999986 4 699999999998643 33
Q ss_pred HHHhcceEEEccCCcCcc-ccHHHHHhcCCCC-C-CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-D-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~-~-~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
..+++.++|+||++.+|. .|+.||+.++... . ... +.+.++++..++.+.+... ......+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LS~G~~q 155 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR-----LKSNAMELSGGQQQ 155 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH-----hhCCcCcCCHHHHH
Confidence 456788999999999885 7999999864211 1 111 2233334444443221110 01123679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
|++|||||+.+|++|||||||++||+.++..+.+.|+++.+ +.|||++||+++.+.. ||++++|++|++++.|++
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~----~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE----KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh----CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999852 4799999999999865 999999999999999999
Q ss_pred HHHhhc
Q 017091 356 AELLHK 361 (377)
Q Consensus 356 ~~l~~~ 361 (377)
+++...
T Consensus 232 ~~~~~~ 237 (252)
T PRK14256 232 KKIFTT 237 (252)
T ss_pred HHHHhC
Confidence 998765
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=361.66 Aligned_cols=219 Identities=30% Similarity=0.459 Sum_probs=179.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCC--CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~~ 203 (377)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999974 369999999999999999999999999999999999986 489999999998853 334
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCCC-CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~-~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
..+++.++|++|++.+|+.|+.||+.++.... .. .+.+..+++..++.+.+.... .....+||||||||++
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-----~~~~~~LSgGq~qrv~ 161 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKL-----KQSGLSLSGGQQQRLC 161 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHh-----cCCcccCCHHHHHHHH
Confidence 56678899999999888779999998753211 11 122333444444433222110 1123579999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe---------CCEE
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID---------DGRI 349 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~---------~G~i 349 (377)
|||||+.+|++|||||||++||+.++..+.+.|.++.+ ++|||++||+++.+.. ||+|++|+ +|++
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i 237 (264)
T PRK14243 162 IARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE----QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYL 237 (264)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceE
Confidence 99999999999999999999999999999999999852 4799999999999865 99999998 8999
Q ss_pred EEEcChHHHhhc
Q 017091 350 IEVGNHAELLHK 361 (377)
Q Consensus 350 ~~~g~~~~l~~~ 361 (377)
++.|+++++.+.
T Consensus 238 ~~~~~~~~~~~~ 249 (264)
T PRK14243 238 VEFDRTEKIFNS 249 (264)
T ss_pred EEeCCHHHHHhC
Confidence 999999999764
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=347.98 Aligned_cols=199 Identities=35% Similarity=0.508 Sum_probs=173.1
Q ss_pred EEEEEEEEEcCCCCC--CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 132 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 132 i~~~~v~~~y~~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
|+++||+++|++... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999975310 3699999999999999999999999999999999999999999999998 5
Q ss_pred eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCC
Q 017091 210 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 210 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~ 287 (377)
|+|++|++.+|+.|++||+.++.. ...+....+.+.+++.+++..+|.++++... ...||||||||++|||||+.+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~ 145 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP--FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSD 145 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC--cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998632 2344555667777888889998888777654 367999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHH-HHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCE
Q 017091 288 PAILLLDEATSALDSESEHYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 348 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~-l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~ 348 (377)
|+++||||||++||+.+.+.+.+. +.++.+ .|.|||++||+++.+..||++++|++|+
T Consensus 146 p~llllDEP~~~LD~~~~~~l~~~ll~~~~~---~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLL---NNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhcc---CCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999999989874 555532 3789999999999987799999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-48 Score=361.73 Aligned_cols=220 Identities=32% Similarity=0.481 Sum_probs=178.8
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCC--CC
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LD 202 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~~ 202 (377)
..|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|+++.. ..
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 46999999999974 3599999999999999999999999999999999999985 48999999998853 23
Q ss_pred HHHHhcceEEEccCCcCccccHHHHHhcCCCC-C-CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~-~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
...+++.|+|+||++.+|+.|++||+.++... . ..+ +.+.++++..++.+.+... . ......|||||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~--~~~~~~LS~G~~q 157 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK---L--NKSALGLSGGQQQ 157 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH---h--cCCcccCCHHHHH
Confidence 34567789999999998889999999764211 0 111 2233444444443222111 0 1123579999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe-----CCEEE
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID-----DGRII 350 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~-----~G~i~ 350 (377)
|++|||||+.+|++|||||||++||+.++..+.+.|+++++ ++|||++||+++.+.. ||++++|+ +|+++
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~ 233 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS----ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV 233 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEE
Confidence 99999999999999999999999999999999999999842 5799999999999875 99999998 59999
Q ss_pred EEcChHHHhhc
Q 017091 351 EVGNHAELLHK 361 (377)
Q Consensus 351 ~~g~~~~l~~~ 361 (377)
+.|+++++.+.
T Consensus 234 ~~~~~~~~~~~ 244 (259)
T PRK14260 234 EFGVTTQIFSN 244 (259)
T ss_pred EeCCHHHHhcC
Confidence 99999998754
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=354.18 Aligned_cols=213 Identities=31% Similarity=0.531 Sum_probs=181.8
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|+++.|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 478999999963 38999999999999999999999999999999999999999999999999876543 357899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCC-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPKD-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|+||++.+| ..|+.||+.++.... .. .+++.++++.+++.+++++.+ ..||||||||++||||++
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~ 145 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP---------ETLSGGEQQRVAIARALV 145 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc---------ccCCHHHHHHHHHHHHHH
Confidence 999999888 589999998642111 11 223345566666666655544 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
.+|++++|||||++||+.+++.+.+.|+++.++ .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~--~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKE--FGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999999999998542 37899999999999875 999999999999999999888764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-48 Score=361.30 Aligned_cols=218 Identities=33% Similarity=0.508 Sum_probs=176.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCCCC--HH
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDLD--IR 204 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~~--~~ 204 (377)
-+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999964 369999999999999999999999999999999999986 47999999999875432 23
Q ss_pred HHhcceEEEccCCcCccccHHHHHhcCCC-CCC--C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 205 WLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV--K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~--~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
.+++.++|+||++.+|+.|+.||+.++.. ... . ++.+..+++..++.+.+... .......||||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LS~Gq~qr 157 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDR-----LKDSAFELSGGQQQR 157 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhH-----hhcChhhCCHHHHHH
Confidence 46778999999999887899999986421 111 1 11222333444432211000 011235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK----KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQ 233 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999884 36899999999999865 9999999999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
+++..
T Consensus 234 ~~~~~ 238 (251)
T PRK14244 234 EIFKN 238 (251)
T ss_pred HHhcC
Confidence 98765
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=364.88 Aligned_cols=220 Identities=31% Similarity=0.451 Sum_probs=177.1
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCCC--C
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--D 202 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~--~ 202 (377)
..|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++... .
T Consensus 38 ~~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGEF---EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECCE---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 359999999999743 59999999999999999999999999999999999864 4999999999987542 2
Q ss_pred HHHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
...+++.++|+||++.+|..|+.||+.++... .. .. +.+.++++..++.+.+.. .. ......|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~--~~~~~~LSgGq~q 189 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD---RL--DKNALGLSGGQQQ 189 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhh---Hh--hCChhhCCHHHHH
Confidence 23467789999999998877999999875211 11 11 122233333332111100 00 1123579999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||++|||++.+.. ||++++|++|++++.|++
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~----~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~ 265 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR----GSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999884 25799999999999865 999999999999999999
Q ss_pred HHHhhc
Q 017091 356 AELLHK 361 (377)
Q Consensus 356 ~~l~~~ 361 (377)
+++.++
T Consensus 266 ~~~~~~ 271 (286)
T PRK14275 266 AQLFTN 271 (286)
T ss_pred HHHHhC
Confidence 998764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=355.24 Aligned_cols=214 Identities=32% Similarity=0.517 Sum_probs=179.2
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++. ++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~~---~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGSF---QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECCe---eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 4789999999743 69999999999999999999999999999999999999999999999999865432 367899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~~-~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|+||++.+|. .|+.||+.+.... ... .+.+.++++..++.++.++.+ .+||+||+||++|||||+
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP---------NQLSGGQRQRVALARALA 146 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999885 6999999875321 111 122333444444444433332 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
++|+++||||||++||+.+++.+.+.|+++.++ .++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~--~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDE--VHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999988542 37899999999999865 999999999999999999998754
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=362.45 Aligned_cols=220 Identities=30% Similarity=0.497 Sum_probs=179.2
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCC--CC
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LD 202 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~--~~ 202 (377)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 24 ~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 24 TALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred cEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 36999999999964 3699999999999999999999999999999999999884 89999999999864 23
Q ss_pred HHHHhcceEEEccCCcCccccHHHHHhcCCC-CCC-C----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~-~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
...+++.++|+||++.+|..|++||+.++.. ... . .+.+.++++..++.+.+... ......+|||||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LS~Gq~q 175 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDR-----LHENAFGLSGGQQQ 175 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHH-----hhCCcccCCHHHHH
Confidence 4456788999999999887799999986421 111 1 12233344444432211110 01123579999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
|++|||||+.+|+++||||||++||+.++..+.+.|+++++ +.|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~----~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 251 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS----KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDT 251 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCH
Confidence 99999999999999999999999999999999999999852 5799999999999865 999999999999999999
Q ss_pred HHHhhc
Q 017091 356 AELLHK 361 (377)
Q Consensus 356 ~~l~~~ 361 (377)
+++...
T Consensus 252 ~~~~~~ 257 (272)
T PRK14236 252 DTLFTS 257 (272)
T ss_pred HHHhcC
Confidence 998754
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=358.37 Aligned_cols=220 Identities=28% Similarity=0.420 Sum_probs=177.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~--~~ 203 (377)
.|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 5899999999974 3699999999999999999999999999999999999763 489999999998754 33
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
...++.++|+||++.+|+.|++||+.++... .. .. +.+.++++..++.+.+... .......||||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-----~~~~~~~LS~G~~qr 157 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDR-----LHDSALSLSGGQQQR 157 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHH-----hhcChhhCCHHHHHH
Confidence 4567789999999998888999999875321 11 11 1222333333332111100 011135799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++||||++.+|+++||||||++||+.+++.+.+.|+++++ ++|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~----~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK----EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTT 233 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh----CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHH
Confidence 9999999999999999999999999999999999998852 4799999999999965 9999999999999999999
Q ss_pred HHhhcC
Q 017091 357 ELLHKG 362 (377)
Q Consensus 357 ~l~~~~ 362 (377)
++....
T Consensus 234 ~~~~~~ 239 (253)
T PRK14261 234 QIFENP 239 (253)
T ss_pred HHHhCC
Confidence 987543
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-47 Score=361.30 Aligned_cols=220 Identities=28% Similarity=0.479 Sum_probs=177.7
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCC--CC
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LD 202 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~--~~ 202 (377)
..|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 36999999999974 369999999999999999999999999999999999997 689999999998854 23
Q ss_pred HHHHhcceEEEccCCcCccccHHHHHhcCCCC-CC---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 017091 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv 278 (377)
...+++.++|+||++.+|..|+.||+.++... .. ..+++..+++..++...+.. .......+||||||||+
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-----~~~~~~~~LSgGe~qrv 189 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-----QLDSSGLDLSGGQQQRL 189 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-----HHhCCcccCCHHHHHHH
Confidence 44567889999999988877999999864211 11 12233344444443211110 00112367999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEE-EEeCCEEEEEcChH
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIV-VIDDGRIIEVGNHA 356 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~-~l~~G~i~~~g~~~ 356 (377)
+|||||+.+|++|||||||++||+.+++.+.+.|+++++ +.|||++||+++.+.. |||++ +|++|++++.|+++
T Consensus 190 ~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~----~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~ 265 (285)
T PRK14254 190 CIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE----EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTD 265 (285)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHH
Confidence 999999999999999999999999999999999999853 3699999999999875 99975 67999999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++..+
T Consensus 266 ~~~~~ 270 (285)
T PRK14254 266 KIFEN 270 (285)
T ss_pred HHHhC
Confidence 98754
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-47 Score=359.77 Aligned_cols=220 Identities=27% Similarity=0.410 Sum_probs=178.7
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCCC--C
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--D 202 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~--~ 202 (377)
..|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... .
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 36999999999974 3699999999999999999999999999999999999863 699999999988532 3
Q ss_pred HHHHhcceEEEccCCcCccccHHHHHhcCCCCC-C---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 017091 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-V---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~-~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv 278 (377)
...+++.|+|+||++.+|+.|+.||+.++.... . .++.+..+++.+++.+.+... .......|||||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-----~~~~~~~LSgGq~qrv 170 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDK-----LKEKGTALSGGQQQRL 170 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHH-----hcCCcccCCHHHHHHH
Confidence 345677899999999988779999998752111 1 112223344444443222110 0111257999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe---------CCE
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID---------DGR 348 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~---------~G~ 348 (377)
+|||||+.+|++|||||||++||+.++..+.+.|++++ ++.|||++|||++.+.. ||++++|+ +|+
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~ 246 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK----EQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGK 246 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCce
Confidence 99999999999999999999999999999999999984 25799999999999865 99999998 899
Q ss_pred EEEEcChHHHhhc
Q 017091 349 IIEVGNHAELLHK 361 (377)
Q Consensus 349 i~~~g~~~~l~~~ 361 (377)
+++.|+++++...
T Consensus 247 ~~~~g~~~~~~~~ 259 (274)
T PRK14265 247 LVEFSPTEQMFGS 259 (274)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999998764
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=351.20 Aligned_cols=207 Identities=30% Similarity=0.470 Sum_probs=173.0
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH---HHh
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 207 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---~~r 207 (377)
++++|+++.|+++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996421 14699999999999999999999999999999999999999999999999998765532 356
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCCC--CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 208 EKIGFVGQEPQLLQ-MDIKSNIMYGCPK--DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+.++|+||++.+|. .|+.||+.++... .... +.+.++++..++.++++..| ..||||||||++|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrv~l 152 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP---------HNLSGGQKQRVAI 152 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHH
Confidence 78999999999885 7999999864211 1111 23444555555555555444 5799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEE
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 349 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i 349 (377)
|||++.+|+++||||||++||+.++..+.+.|+++.++ .++|+|++||+++....||+|++|++|++
T Consensus 153 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 153 ARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE--QGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999998642 47899999999997666999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-47 Score=361.13 Aligned_cols=219 Identities=27% Similarity=0.473 Sum_probs=178.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCCCC-HH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLD-IR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~~-~~ 204 (377)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999974 3699999999999999999999999999999999999986 7999999999987543 34
Q ss_pred HHhcceEEEccCCcCccccHHHHHhcCCCC--CCCHHHH----HHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 017091 205 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK--DVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~--~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv 278 (377)
.+++.++|+||++.+|+.|++||+.++... ....++. .+.++..++...+.. .......+||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD-----RLSDSPFRLSGGQQQLL 172 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhh-----HhhCCcccCCHHHHHHH
Confidence 567889999999998889999999875311 1122222 122233333211100 00112367999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHH
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~ 357 (377)
+|||||+.+|++|||||||++||+.+++.+.+.|+++++ ++|||++||+++.+.. ||++++|++|++++.|++++
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD----RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999998853 4799999999999865 99999999999999999999
Q ss_pred Hhhc
Q 017091 358 LLHK 361 (377)
Q Consensus 358 l~~~ 361 (377)
+.+.
T Consensus 249 ~~~~ 252 (276)
T PRK14271 249 LFSS 252 (276)
T ss_pred HHhC
Confidence 9765
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=358.63 Aligned_cols=221 Identities=29% Similarity=0.477 Sum_probs=180.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC-----CCeEEECCEeCCC--CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTD--LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-----~G~I~i~g~~i~~--~~~ 203 (377)
.|+++||+++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+.
T Consensus 7 ~l~~~nl~~~~~~~---~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 7 AIKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred eEEEeeEEEEeCCe---eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 59999999999642 5999999999999999999999999999999999999985 8999999998742 233
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCC-CC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|+||++.+|..|++||+.++... .. .. +.+.++++..++.+++... .......||||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~~~LSgGq~qr 158 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK-----IHKSALDLSGGQQQR 158 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH-----hcCCcccCCHHHHHH
Confidence 4567789999999998889999999764210 11 11 1233344444433222110 011225799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC-----CEEEE
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-----GRIIE 351 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~-----G~i~~ 351 (377)
++|||||+.+|++|||||||++||+.++..+.+.|+++++. .+.|+|+||||++.+.. ||+|++|++ |++++
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~--~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLR--SELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999987542 47899999999999875 999999999 99999
Q ss_pred EcChHHHhhc
Q 017091 352 VGNHAELLHK 361 (377)
Q Consensus 352 ~g~~~~l~~~ 361 (377)
.|+++++.+.
T Consensus 237 ~~~~~~~~~~ 246 (261)
T PRK14258 237 FGLTKKIFNS 246 (261)
T ss_pred eCCHHHHHhC
Confidence 9999999765
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=355.74 Aligned_cols=238 Identities=27% Similarity=0.414 Sum_probs=192.8
Q ss_pred HHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 105 KVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 105 rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+.+++..++++.. ..+.+.....|+++|+++. + +++|+|+||+|++||+++|+||||||||||+++|+|++
T Consensus 16 ~~~~~~~~~~~~~~---~~~~~~~~~~l~i~nls~~--~---~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 16 GFGELLEKAKQENN---DRKHSSDDNNLFFSNLCLV--G---APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred HHHHHHhccccccc---ccccCCCCCeEEEEEEEEe--c---ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45555555544321 1222233446999999985 2 35999999999999999999999999999999999999
Q ss_pred CCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccc
Q 017091 185 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 264 (377)
Q Consensus 185 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 264 (377)
+|++|+|.++| .|+|++|++.+++.|++||+.++.. .........++..++.+.++.+|.++++.
T Consensus 88 ~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~--~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 152 (282)
T cd03291 88 EPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS--YDEYRYKSVVKACQLEEDITKFPEKDNTV 152 (282)
T ss_pred CCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc--cCHHHHHHHHHHhCCHHHHHhccccccce
Confidence 99999999988 3999999999988899999988632 12333445566677788888888776655
Q ss_pred cC--CCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHH-HHhhccCCCCeEEEEEecCchhHHhcCeE
Q 017091 265 VD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 265 ~~--~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l-~~l~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
+. ...||||||||++|||||+.+|++|||||||++||+.++..+.+.+ ..+. .+.|||++||+++.+..||++
T Consensus 153 ~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~----~~~tIiiisH~~~~~~~~d~i 228 (282)
T cd03291 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM----ANKTRILVTSKMEHLKKADKI 228 (282)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh----CCCEEEEEeCChHHHHhCCEE
Confidence 44 3689999999999999999999999999999999999999898754 5553 368999999999998779999
Q ss_pred EEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 017091 342 VVIDDGRIIEVGNHAELLHKGRLYAKLV 369 (377)
Q Consensus 342 ~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 369 (377)
++|++|++++.|+++++......|.+.+
T Consensus 229 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 256 (282)
T cd03291 229 LILHEGSSYFYGTFSELQSLRPDFSSKL 256 (282)
T ss_pred EEEECCEEEEECCHHHHHhcchHHHHHH
Confidence 9999999999999999886544455443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-47 Score=355.59 Aligned_cols=219 Identities=27% Similarity=0.450 Sum_probs=176.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC-----CCeEEECCEeCCC--CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTD--LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-----~G~I~i~g~~i~~--~~~ 203 (377)
.++++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.++.. ...
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4899999999974 36999999999999999999999999999999999999874 8999999999864 233
Q ss_pred HHHhcceEEEccCCcCcc-ccHHHHHhcCCC-CCC-CHHHHHH----HHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDV-KNEDIEW----AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~-~~~-~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
..+++.++|+||++.+|. .|+.||+.++.. ... ..+...+ .++..++.+.+. ...+ ....+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~--~~~~~LS~G~~q 155 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK---DRLK--TPATGLSGGQQQ 155 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhh---hhhc--CCcccCCHHHHH
Confidence 456778999999998885 699999976421 111 1221111 122222211110 0111 123679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
|++|||||+.+|++|||||||++||+.++..+.+.|++++ +++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK----KVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPT 231 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999884 25899999999999875 999999999999999999
Q ss_pred HHHhhc
Q 017091 356 AELLHK 361 (377)
Q Consensus 356 ~~l~~~ 361 (377)
++++..
T Consensus 232 ~~~~~~ 237 (252)
T PRK14272 232 DQLFTN 237 (252)
T ss_pred HHHHhC
Confidence 998765
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-47 Score=355.79 Aligned_cols=220 Identities=30% Similarity=0.495 Sum_probs=176.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC--C---CCCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--p---~~G~I~i~g~~i~~~--~~ 203 (377)
+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++... ..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999974 369999999999999999999999999999999999975 5 599999999988532 23
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCC-CCC-CH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-KN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..+++.++|+||++.+|+.|+++|+.++.. ... .. +++...++..++.+.+.. .......+||||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-----~~~~~~~~LS~Gq~qr 156 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD-----HLHESALSLSGGQQQR 156 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhh-----HHhcCcccCCHHHHHH
Confidence 456778999999999888899999986421 111 11 112222333332111100 0011236799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|++.
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD----QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTK 232 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh----CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999853 4799999999999865 9999999999999999999
Q ss_pred HHhhcC
Q 017091 357 ELLHKG 362 (377)
Q Consensus 357 ~l~~~~ 362 (377)
+++.+.
T Consensus 233 ~~~~~~ 238 (252)
T PRK14255 233 QMFLNP 238 (252)
T ss_pred HHhcCC
Confidence 987653
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-47 Score=354.57 Aligned_cols=221 Identities=27% Similarity=0.376 Sum_probs=175.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEe-----CCCCCHHH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-----LTDLDIRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~-----i~~~~~~~ 205 (377)
.|+++||++.|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 3 ~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGGG---KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCCc---eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 48999999999743 58999999999999999999999999999999999999999999999987 65555432
Q ss_pred ----HhcceEEEccCCcC--c-cccHHHHHhcCC--CCCCCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHHH
Q 017091 206 ----LREKIGFVGQEPQL--L-QMDIKSNIMYGC--PKDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQK 275 (377)
Q Consensus 206 ----~r~~i~~v~Q~~~l--~-~~tv~eni~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~LSgGq~ 275 (377)
+++.++|++|++.. + ..|+.+|+.+.. ......... ...+.++++.++... ........||||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ 154 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence 24579999999853 2 468888885321 000001110 112344555544321 11112367999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
|||+|||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|.|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD--LGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999987542 37899999999999975 99999999999999999
Q ss_pred hHHHhhc
Q 017091 355 HAELLHK 361 (377)
Q Consensus 355 ~~~l~~~ 361 (377)
++++..+
T Consensus 233 ~~~~~~~ 239 (253)
T TIGR02323 233 TDQVLDD 239 (253)
T ss_pred HHHHhcC
Confidence 9998754
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=348.56 Aligned_cols=203 Identities=31% Similarity=0.489 Sum_probs=166.2
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC----HHHHhc
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLRE 208 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~~r~ 208 (377)
.+ ||+|+|++. .+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.... ....++
T Consensus 3 ~~-~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 44 999999753 34 99999999 999999999999999999999999999999999999875321 234567
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCCC---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPKDV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
.++|+||++.+| ..|++||+.++..... ..+++.+.++..++.+..+.. ..+||||||||++||||+
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~la~al 146 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRY---------PAQLSGGEKQRVALARAL 146 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcC---------cccCCHHHHHHHHHHHHH
Confidence 899999999888 5799999987532110 112233444444444433332 267999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
+.+|+++||||||++||+.+++.+.+.|+++.++ .|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 147 AAQPELLLLDEPFSALDRALRLQLLPELKQIKKN--LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998642 37899999999999865 9999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-47 Score=346.48 Aligned_cols=209 Identities=28% Similarity=0.454 Sum_probs=177.9
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH----HHHhc
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWLRE 208 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~----~~~r~ 208 (377)
.+.|++|+|+.. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...++
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999753 469999999999999999999999999999999999999999999999998765432 23456
Q ss_pred ceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcC
Q 017091 209 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 209 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~ 286 (377)
.++|++|++.+|+.|++||+.++.. ...++...+++..++.+.++.+|.++++... ...||||||||++||||++.
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP--FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc--CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 7999999999888899999988532 2344455667777877778888877766554 46899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHH--HHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCE
Q 017091 287 DPAILLLDEATSALDSESEHYVKG--VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 348 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~--~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~ 348 (377)
+|++|||||||++||+.++..+.+ .++.+++ .|.|+|++||+++.+..||++++|++|+
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~---~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD---DKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc---CCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999999988 5666543 4789999999999987799999999874
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-47 Score=353.81 Aligned_cols=224 Identities=24% Similarity=0.401 Sum_probs=178.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC----CCCeEEECCEeCCCCCHHHH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRWL 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p----~~G~I~i~g~~i~~~~~~~~ 206 (377)
.|+++||+++| + +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ...
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 3 2599999999999999999999999999999999999999 999999999988532 222
Q ss_pred hcceEEEccCCc-Cc--cccHHHHHhcCC---CCCCCHHHHHHHHHHcCHHH---HHHhCCCCcccccCCCCCChHHHHH
Q 017091 207 REKIGFVGQEPQ-LL--QMDIKSNIMYGC---PKDVKNEDIEWAAKQAYVHE---FILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 207 r~~i~~v~Q~~~-l~--~~tv~eni~~~~---~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
++.++|+||++. .| ..|+.+|+.+.. ......+++.+.++..++.+ .++. ...+||||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~~LS~Gq~qr 148 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKL---------YPFEMSGGMLQR 148 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhc---------CCcccCHHHHHH
Confidence 457999999985 34 368888875421 11112233444455544432 1122 125799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
++|||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|.|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 149 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 226 (254)
T PRK10418 149 MMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK--RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVE 226 (254)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999988642 47899999999999865 9999999999999999999
Q ss_pred HHhhcC--HHHHHHHHH
Q 017091 357 ELLHKG--RLYAKLVKR 371 (377)
Q Consensus 357 ~l~~~~--~~~~~~~~~ 371 (377)
++.+.. ...+.++..
T Consensus 227 ~~~~~~~~~~~~~~~~~ 243 (254)
T PRK10418 227 TLFNAPKHAVTRSLVSA 243 (254)
T ss_pred HHhhCCCCHHHHHHHHh
Confidence 987653 233444443
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-47 Score=353.57 Aligned_cols=220 Identities=32% Similarity=0.492 Sum_probs=180.1
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCCC--C
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--D 202 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~--~ 202 (377)
..++++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++... +
T Consensus 2 ~~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 78 (250)
T PRK14266 2 YRIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78 (250)
T ss_pred cEEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccccc
Confidence 35899999999974 369999999999999999999999999999999999874 4899999999998642 3
Q ss_pred HHHHhcceEEEccCCcCccccHHHHHhcCCC-CC-CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KD-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 203 ~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~-~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
...+++.++|+||++.+|..|+.||+.++.. .. ... +.+.++++.+++.+.+... . ......|||||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~--~~~~~~LS~Gq~q 153 (250)
T PRK14266 79 VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---L--DKSALGLSGGQQQ 153 (250)
T ss_pred HHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---H--hCCcccCCHHHHH
Confidence 4456788999999999998899999986521 11 111 2233345555543332211 0 1123579999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
|++|||||+.+|++|||||||++||+.++..+.+.|++++ ++.|||++||+++.+.. ||++++|++|++++.|++
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~----~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~ 229 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK----EDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLT 229 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999999884 36799999999999876 899999999999999999
Q ss_pred HHHhhc
Q 017091 356 AELLHK 361 (377)
Q Consensus 356 ~~l~~~ 361 (377)
+++...
T Consensus 230 ~~~~~~ 235 (250)
T PRK14266 230 DQIFIN 235 (250)
T ss_pred HHHHhC
Confidence 998754
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-47 Score=388.44 Aligned_cols=215 Identities=29% Similarity=0.425 Sum_probs=179.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHh-cc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR-EK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r-~~ 209 (377)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...++ +.
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5999999999974 3699999999999999999999999999999999999999999999999998776655443 56
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCCC-CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPKDV-KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
+||+||++.++ ..|++||+.++..... ..+++.+.++..++.+..+ ....+|||||||||+|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD---------SSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcccc---------CChhhCCHHHHHHHHHHHHHHcC
Confidence 99999999887 5799999988642110 1122233333333322221 22367999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|++|||||||++||+.+...+.+.|+++.+ .|+|||++|||++.+.. ||+|++|++|++++.|+++++..
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLA---QGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999999864 37899999999999865 99999999999999999988754
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-47 Score=358.03 Aligned_cols=212 Identities=25% Similarity=0.417 Sum_probs=173.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNG--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCC--cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 48999999999632 369999999999999999999999999999999999999999999999998742 1123469
Q ss_pred EEEccCCcC---ccccHHHHHhcCCCC-----C-C---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 017091 211 GFVGQEPQL---LQMDIKSNIMYGCPK-----D-V---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278 (377)
Q Consensus 211 ~~v~Q~~~l---~~~tv~eni~~~~~~-----~-~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv 278 (377)
+|+||++.+ +..++++|+.++... . . ..+.+.++++..++.++.++.+ .+||||||||+
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgG~~qrv 151 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI---------GELSGGQKKRV 151 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc---------ccCCHHHHHHH
Confidence 999999865 345789998653210 0 0 1122344555556555443332 57999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHH
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~ 357 (377)
+|||||+.+|++|||||||++||+.+++.+.+.|.++++ +|+|||++||+++.+.. ||+++++ +|++++.|++++
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~---~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD---EGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHh
Confidence 999999999999999999999999999999999999863 37899999999998865 9999777 899999999998
Q ss_pred Hhh
Q 017091 358 LLH 360 (377)
Q Consensus 358 l~~ 360 (377)
+.+
T Consensus 228 ~~~ 230 (272)
T PRK15056 228 TFT 230 (272)
T ss_pred ccC
Confidence 864
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-47 Score=395.95 Aligned_cols=226 Identities=30% Similarity=0.474 Sum_probs=185.2
Q ss_pred cEEEEEEEEEcCCC--------CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC
Q 017091 131 HVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 202 (377)
Q Consensus 131 ~i~~~~v~~~y~~~--------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~ 202 (377)
.|+++||++.|+.. ....+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 59999999999621 0136999999999999999999999999999999999999999999999999987665
Q ss_pred HH---HHhcceEEEccCC--cCc-cccHHHHHhcCCC-CCC-C----HHHHHHHHHHcCHH-HHHHhCCCCcccccCCCC
Q 017091 203 IR---WLREKIGFVGQEP--QLL-QMDIKSNIMYGCP-KDV-K----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDL 269 (377)
Q Consensus 203 ~~---~~r~~i~~v~Q~~--~l~-~~tv~eni~~~~~-~~~-~----~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~ 269 (377)
.. .++++|+||||++ .++ ..||.||+.++.. ... . .+++.+.++.+++. +..++.| .+
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~---------~~ 463 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP---------HE 463 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc---------cc
Confidence 33 3567899999998 366 5799999975321 011 1 12334455555552 3344443 67
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCE
Q 017091 270 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 348 (377)
Q Consensus 270 LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~ 348 (377)
|||||||||+|||||+.+|++|||||||++||+.++..+.++|++++++ .|.|||+||||++.+.. ||||++|++|+
T Consensus 464 LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~--~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD--FGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999998653 47899999999999976 99999999999
Q ss_pred EEEEcChHHHhhc-CHHHHH
Q 017091 349 IIEVGNHAELLHK-GRLYAK 367 (377)
Q Consensus 349 i~~~g~~~~l~~~-~~~~~~ 367 (377)
|++.|++++++.+ ...|.+
T Consensus 542 iv~~g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 542 IVEIGPRRAVFENPQHPYTR 561 (623)
T ss_pred EEEecCHHHHhcCCCCHHHH
Confidence 9999999999764 234544
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=354.29 Aligned_cols=220 Identities=27% Similarity=0.397 Sum_probs=180.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~--~~ 203 (377)
.+.++++++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ..
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4889999999964 3699999999999999999999999999999999999986 799999999998542 33
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCCC----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
..+++.++|+||++.+|..|+.||+.++.... ...+.+.++++..++.+.+.... .....+|||||+||++
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-----~~~~~~LS~G~~qrv~ 159 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKL-----KVSGLSLSGGQQQRLC 159 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhh-----hCCcccCCHHHHHHHH
Confidence 35677899999999988999999998753211 11223444555555433222110 1123579999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe--------CCEEE
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID--------DGRII 350 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~--------~G~i~ 350 (377)
|||||+++|++|||||||++||+.++..+.+.|++++ ++.|+|++||+++.+.. ||+|++|+ +|+++
T Consensus 160 laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~----~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 160 IARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK----KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 9999999999999999999999999999999999984 35799999999998865 99999996 89999
Q ss_pred EEcChHHHhhcC
Q 017091 351 EVGNHAELLHKG 362 (377)
Q Consensus 351 ~~g~~~~l~~~~ 362 (377)
+.|+++++++..
T Consensus 236 ~~g~~~~~~~~~ 247 (261)
T PRK14263 236 EMGPTAQIFQNP 247 (261)
T ss_pred EeCCHHHHHhCC
Confidence 999999997653
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=355.22 Aligned_cols=220 Identities=30% Similarity=0.432 Sum_probs=178.1
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCC----
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD---- 200 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~---- 200 (377)
+.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 15 ~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 15 QKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred ceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 45999999999974 3699999999999999999999999999999999999975 79999999987642
Q ss_pred CCHHHHhcceEEEccCCcCccccHHHHHhcCCC-CCCC-----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH
Q 017091 201 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 274 (377)
Q Consensus 201 ~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq 274 (377)
.....+++.++|+||++.+|..|++||+.++.. .... ++.+..+++.+++.+.+.... ......|||||
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-----~~~~~~LS~G~ 166 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRL-----GDLAFNLSGGQ 166 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHH-----hCCcccCCHHH
Confidence 233456788999999999987899999986521 0111 123334444443321111100 01125799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
|||++|||||+.+|+++||||||++||+.+.+.+.+.|++++ ++.|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 167 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~----~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 167 QQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK----NKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH----hCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999884 25799999999999865 9999999999999999
Q ss_pred ChHHHhhc
Q 017091 354 NHAELLHK 361 (377)
Q Consensus 354 ~~~~l~~~ 361 (377)
+++++...
T Consensus 243 ~~~~~~~~ 250 (265)
T PRK14252 243 ATDTIFIK 250 (265)
T ss_pred CHHHHHhC
Confidence 99998753
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-47 Score=334.80 Aligned_cols=171 Identities=34% Similarity=0.663 Sum_probs=156.2
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
++++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++
T Consensus 1 l~~~~l~~~~~~~---~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGKK---TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECCe---eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 4789999999743 5999999999999999999999999999999999999999999999999987654 45677899
Q ss_pred EEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 017091 212 FVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 290 (377)
Q Consensus 212 ~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~i 290 (377)
|+||++.+|. .|+.||+. ||||||||++|||||+.+|++
T Consensus 77 ~~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~i 116 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPEL 116 (173)
T ss_pred EEecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCE
Confidence 9999998875 69999973 799999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 291 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 291 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
+||||||++||+.++..+.+.|+++.+ +|.|+|++||+++.+.. ||++++|++|++
T Consensus 117 lllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 117 LILDEPTSGLDPESRREFWELLRELKK---EGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999864 37899999999999875 999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-47 Score=335.83 Aligned_cols=174 Identities=45% Similarity=0.699 Sum_probs=158.3
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC--HHHHhcc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWLREK 209 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~--~~~~r~~ 209 (377)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 478999999974 36999999999999999999999999999999999999999999999999987664 4566788
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
++|++|++.+| ..|++||+.+. ||||||||++|||||+.+|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 99999999887 57999998652 7999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCE
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 348 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~ 348 (377)
+++||||||++||+.++..+.+.|++++++ .++|+|++||+++.+.. ||++++|++|+
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQ--LGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999998642 36899999999999975 99999999884
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-47 Score=379.35 Aligned_cols=229 Identities=29% Similarity=0.428 Sum_probs=184.9
Q ss_pred cEEEEEEEEEcCCCCC-CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC----CCeEEECCEeCCCCCHHH
Q 017091 131 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS----DGQIYIDGFPLTDLDIRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~-~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~----~G~I~i~g~~i~~~~~~~ 205 (377)
.++++|+++.|..... .++++||||+|.+||++||||+|||||||+.++|+|++++. +|+|.++|.++..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975422 36999999999999999999999999999999999999987 899999999998877654
Q ss_pred H---h-cceEEEccCCc-Cc-c-ccHHHHHhcCCC--CCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh
Q 017091 206 L---R-EKIGFVGQEPQ-LL-Q-MDIKSNIMYGCP--KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG 272 (377)
Q Consensus 206 ~---r-~~i~~v~Q~~~-l~-~-~tv~eni~~~~~--~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSg 272 (377)
+ | +.|+||||+|. .+ + .||.+.|.-... ... ..++..+.++.+++.+-... ...+++|||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~-------~~yPheLSG 157 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR-------DRYPHQLSG 157 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh-------ccCCcccCc
Confidence 3 2 56999999984 34 3 677776643111 111 12233344445544332222 123488999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEE
Q 017091 273 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 351 (377)
Q Consensus 273 Gq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~ 351 (377)
||||||.||+||+.+|++||+||||++||+.++.+|+++|+++.++ .|.++|+||||+..+.. ||||+||++|+++|
T Consensus 158 G~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e--~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 158 GMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE--LGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred hHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH--cCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999864 69999999999999976 99999999999999
Q ss_pred EcChHHHhhcC-HHHHHH
Q 017091 352 VGNHAELLHKG-RLYAKL 368 (377)
Q Consensus 352 ~g~~~~l~~~~-~~~~~~ 368 (377)
.|++++++++. ..|.+.
T Consensus 236 ~G~~~~i~~~p~hpYT~~ 253 (539)
T COG1123 236 TGPTEEILSNPQHPYTRG 253 (539)
T ss_pred ecCHHHHHhccCCcccHH
Confidence 99999999863 345443
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=347.18 Aligned_cols=207 Identities=29% Similarity=0.440 Sum_probs=166.8
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC---CCCCeEEECCEeCCCCCHHHHh
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWLR 207 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~---p~~G~I~i~g~~i~~~~~~~~r 207 (377)
+.++||++.|++.+ .+++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++. ...++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 67999999997541 2579999999999999999999999999999999999999 99999999999875 24567
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCCC---C-CCHH----HHHH-HHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 208 EKIGFVGQEPQLLQ-MDIKSNIMYGCPK---D-VKNE----DIEW-AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~-~tv~eni~~~~~~---~-~~~~----~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
+.++|+||++.+|+ .|++||+.++... . .... .... .++..++.+..+ .....|||||+||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qr 151 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGG---------NLVKGISGGERRR 151 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhc---------ccccCcCHHHHHH
Confidence 78999999998885 6999999864210 1 0111 0111 122222221111 1235799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCc-hhHH-hcCeEEEEeCCEEEEEc
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-STIK-AVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l-~~~~-~~d~v~~l~~G~i~~~g 353 (377)
++|||||+.+|+++||||||++||+.++..+.+.+.++.+ .+.|+|++||++ +.+. .||++++|++|++++.|
T Consensus 152 l~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~---~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 152 VSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR---RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999998863 378999999998 4665 59999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=349.67 Aligned_cols=210 Identities=28% Similarity=0.464 Sum_probs=178.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~~---~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECCc---eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 58999999999743 599999999999999999999999999999999999999999999987 2369
Q ss_pred EEEccCCcCcc---ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 211 GFVGQEPQLLQ---MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 211 ~~v~Q~~~l~~---~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
+|+||++.++. .|+.+|+.+. .....+++.++++..++.++++..+ ..||||||||++||||++.+
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrv~laral~~~ 138 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR--PGTKKEDILPALKRVQAGHLIDAPM---------QKLSGGETQRVLLARALLNR 138 (251)
T ss_pred EEeccccccccccChhHHHHHhcc--ccccHHHHHHHHHHcCChHHHhCCh---------hhCCHHHHHHHHHHHHHhcC
Confidence 99999987753 4888988653 1233455667777788777666544 57999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcCHHHH
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRLYA 366 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~~~~~ 366 (377)
|++|||||||++||+.++..+.+.|+++.++ .|.|||++||+++.+.. ||+|++|++ ++++.|+++++.+ ...+.
T Consensus 139 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~ 214 (251)
T PRK09544 139 PQLLVLDEPTQGVDVNGQVALYDLIDQLRRE--LDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFI 214 (251)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHH
Confidence 9999999999999999999999999988642 37899999999999865 999999965 7999999998865 34455
Q ss_pred HHH
Q 017091 367 KLV 369 (377)
Q Consensus 367 ~~~ 369 (377)
+++
T Consensus 215 ~~~ 217 (251)
T PRK09544 215 SMF 217 (251)
T ss_pred HHh
Confidence 554
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=332.71 Aligned_cols=171 Identities=61% Similarity=0.951 Sum_probs=157.4
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999753 136999999999999999999999999999999999999999999999999987776667778899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 291 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~il 291 (377)
|+||++.+|+.|+.||+ ||||||||++||||++.+|++|
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988888999887 7999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCE
Q 017091 292 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 348 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~ 348 (377)
||||||++||+.++..+.+.|.++. +++|+|++||+++.+..||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALA----KGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999884 3589999999999987799999999984
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-47 Score=343.94 Aligned_cols=196 Identities=33% Similarity=0.503 Sum_probs=162.0
Q ss_pred EEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH----HHHhcc
Q 017091 134 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWLREK 209 (377)
Q Consensus 134 ~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~----~~~r~~ 209 (377)
++||++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4799999974 369999999999999999999999999999999999999999999999999754332 234678
Q ss_pred eEEEccCCcCcc-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~~l~~-~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
++|++|++.+|. .|++||+.++... ... .+++.++++..++.+..++.+ .+||||||||++||||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qr~~lara 148 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI---------YELSGGEQQRVALARA 148 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCCh---------hhCCHHHHHHHHHHHH
Confidence 999999999885 7999999874211 111 223344555555544443332 5799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 344 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l 344 (377)
|+.+|++|||||||++||+.+++.+.+.|+++.+ .|.|+|++||+++.+..||++++|
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 149 ILKDPPLILADEPTGSLDPKNRDEVLDLLLELND---EGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999999863 378999999999987779999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-47 Score=389.30 Aligned_cols=219 Identities=25% Similarity=0.413 Sum_probs=179.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~ 209 (377)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... .+++
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999974 36999999999999999999999999999999999999999999999999997766543 3467
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCC-----CC---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPK-----DV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~-----~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
|+|+||++.++ ..|++||+.++... .. ...+. ...+.++++.+...........+|||||||||+|
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~i 156 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREM-----RVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEI 156 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHH-----HHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHH
Confidence 99999999887 57999999875321 00 11111 1123344444433211122236799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++|||||||++||+.++..+.+.|+++++ .|+|||+||||++.+.. ||+|++|++|+++..|+++++.
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 157 AKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK---EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCC
Confidence 9999999999999999999999999999999999864 37899999999999975 9999999999999999988765
Q ss_pred h
Q 017091 360 H 360 (377)
Q Consensus 360 ~ 360 (377)
.
T Consensus 234 ~ 234 (510)
T PRK09700 234 N 234 (510)
T ss_pred H
Confidence 3
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-47 Score=388.26 Aligned_cols=218 Identities=28% Similarity=0.432 Sum_probs=179.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC--CCCeEEECCEeCCCCCHHH-Hh
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRW-LR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i~~~~~~~-~r 207 (377)
+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.++...+... .+
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 5999999999974 3699999999999999999999999999999999999996 8999999999987665543 45
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCCC----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
+.+||+||++.++ ..|++||+.++.... ...++.. ..+.++++.+...........+|||||||||+|||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~ 156 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY-----LRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAK 156 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHH-----HHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHH
Confidence 7799999999887 579999998763211 1111111 11334454443322112223679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||+.+|++|||||||++||+.++..+.+.|.++.+ +|.|||+||||++.+.. ||+|++|++|+++..|+++++.
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 157 ALNKQARLLILDEPTASLTESETAVLLDIIRDLKA---HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 99999999999999999999999999999999853 47899999999999875 9999999999999999987764
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=353.01 Aligned_cols=225 Identities=26% Similarity=0.458 Sum_probs=179.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECC------EeCCCCCHH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG------FPLTDLDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g------~~i~~~~~~ 204 (377)
.|+++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++...+..
T Consensus 10 ~i~~~~~~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYINDK---AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCCc---eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 59999999999753 699999999999999999999999999999999999999997776665 555545555
Q ss_pred HHhcceEEEccCCcCcc-ccHHHHHhcCCCC-CC-CHHH----HHHHHHHcCHHHHHHhCCCCccc-ccCCCCCChHHHH
Q 017091 205 WLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DV-KNED----IEWAAKQAYVHEFILSLPCGYET-LVDDDLLSGGQKQ 276 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~-~~-~~~~----~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~LSgGq~Q 276 (377)
.+++.++|+||++.+|. .|+.||+.++... .. ..++ +..+++..++..++. +. ......|||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~LS~G~~q 160 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY------DRLNSPASQLSGGQQQ 160 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch------hhhcCCcccCCHHHHH
Confidence 67888999999999885 6999999875221 11 1111 223333333321110 01 1123579999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
|++|||||+.+|+++||||||++||+.++..+.+.|.+++ ++.|||++||+++.+.. ||++++|++|++++.|++
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~ 236 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK----NEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSS 236 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999884 25799999999999965 999999999999999999
Q ss_pred HHHhhcC-HHHHHH
Q 017091 356 AELLHKG-RLYAKL 368 (377)
Q Consensus 356 ~~l~~~~-~~~~~~ 368 (377)
+++.+.. ..|.+.
T Consensus 237 ~~~~~~~~~~~~~~ 250 (257)
T PRK14246 237 NEIFTSPKNELTEK 250 (257)
T ss_pred HHHHhCCCcHHHHH
Confidence 9998653 234443
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=385.63 Aligned_cols=218 Identities=27% Similarity=0.389 Sum_probs=178.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~ 209 (377)
+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... .++.
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999974 36999999999999999999999999999999999999999999999999986554433 3567
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
++|+||++.++ ..|++||+.++.... ....+.. ..+.++++.+...........+|||||||||+||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 155 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMY-----AEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKV 155 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHH-----HHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHH
Confidence 99999999887 579999998763211 1111111 112344454433222222236899999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
|+.+|++|||||||++||+.++..+.+.|+++++ .|.|||+||||++.+.. ||+|++|++|++++.|+++++.
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 156 LSFESKVIIMDEPTDALTDTETESLFRVIRELKS---QGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 9999999999999999999999999999999864 37899999999999875 9999999999999999887764
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=359.85 Aligned_cols=219 Identities=29% Similarity=0.475 Sum_probs=177.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCeEEECCEeCCCC--CH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--DI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-----p~~G~I~i~g~~i~~~--~~ 203 (377)
.|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +.
T Consensus 45 ~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 45 KLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred eEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 5999999999975 369999999999999999999999999999999999986 6899999999988642 34
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCCC-------------CC-----HHHHHHHHHHcCHHHHHHhCCCCccccc
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-------------VK-----NEDIEWAAKQAYVHEFILSLPCGYETLV 265 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~-------------~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 265 (377)
..+++.++|+||++.+|+.|++||+.++.... .. .+.+..+++.+++.+.+.. ....
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~ 196 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVND-----RLDD 196 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhH-----HhcC
Confidence 45677899999999988889999998752110 00 1122233333333211110 0011
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeE-EE
Q 017091 266 DDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRI-VV 343 (377)
Q Consensus 266 ~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v-~~ 343 (377)
...+|||||||||+|||||+++|++|||||||++||+.++..+.+.|+++++ +.|+|++||+++.+.. ||++ ++
T Consensus 197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~----~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE----EYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEEcCHHHHHHhcCEEEEE
Confidence 2367999999999999999999999999999999999999999999999853 4799999999999865 9996 57
Q ss_pred EeCCEEEEEcChHHHhhc
Q 017091 344 IDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 344 l~~G~i~~~g~~~~l~~~ 361 (377)
|++|++++.|+++++++.
T Consensus 273 l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 273 LTGGELVEYDDTDKIFEN 290 (305)
T ss_pred ecCCEEEEeCCHHHHHhC
Confidence 899999999999998754
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=348.75 Aligned_cols=216 Identities=23% Similarity=0.367 Sum_probs=176.3
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 212 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 212 (377)
+++||++. .+|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|.++|+++...+...+++.++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEE
Confidence 57788874 17999999999999999999999999999999999996 59999999999987776677778999
Q ss_pred EccCCcCc-cccHHHHHhcCCCCCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC-
Q 017091 213 VGQEPQLL-QMDIKSNIMYGCPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR- 286 (377)
Q Consensus 213 v~Q~~~l~-~~tv~eni~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~- 286 (377)
+||++.++ ..|+++|+.++...... .+++.++++..++.+..++.+ ..||||||||++|||||+.
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~ 144 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSV---------NQLSGGEWQRVRLAAVVLQV 144 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHhcc
Confidence 99998655 78999999876321111 122334444445444333322 6799999999999999997
Q ss_pred ------CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 287 ------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 287 ------~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
+|++|||||||++||+.++..+.+.|+++.+ +|.|||++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 145 ~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~---~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 145 WPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ---QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred ccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 6799999999999999999999999999863 37899999999998865 9999999999999999999886
Q ss_pred hcCHHHHHHH
Q 017091 360 HKGRLYAKLV 369 (377)
Q Consensus 360 ~~~~~~~~~~ 369 (377)
... ..++.+
T Consensus 222 ~~~-~~~~~~ 230 (248)
T PRK03695 222 TPE-NLAQVF 230 (248)
T ss_pred Cch-HHHHHh
Confidence 532 334444
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=349.30 Aligned_cols=212 Identities=25% Similarity=0.329 Sum_probs=172.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC--CCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
.|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+....++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4899999999974 3599999999999999999999999999999999998 6899999999999988766554443
Q ss_pred -ceEEEccCCcCcc-ccHHHHHhcCCCCC--------CCH----HHHHHHHHHcCHH-HHHHhCCCCcccccCCC-CCCh
Q 017091 209 -KIGFVGQEPQLLQ-MDIKSNIMYGCPKD--------VKN----EDIEWAAKQAYVH-EFILSLPCGYETLVDDD-LLSG 272 (377)
Q Consensus 209 -~i~~v~Q~~~l~~-~tv~eni~~~~~~~--------~~~----~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~-~LSg 272 (377)
.++|++|++.++. .|+.+|+.++.... ... +.+.++++..++. ..+++. .. .|||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~~LSg 154 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRN---------VNEGFSG 154 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccc---------cccCCCH
Confidence 5899999998884 68999987542110 010 1112223333332 111111 23 4999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh--cCeEEEEeCCEEE
Q 017091 273 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRII 350 (377)
Q Consensus 273 Gq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~--~d~v~~l~~G~i~ 350 (377)
|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ .|.|||++||+++.+.. ||++++|++|+++
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~ 231 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT---SENSIILITHYQRLLDYIKPDYVHVMQNGKII 231 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHhhhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999863 37899999999999864 8999999999999
Q ss_pred EEcChHH
Q 017091 351 EVGNHAE 357 (377)
Q Consensus 351 ~~g~~~~ 357 (377)
+.|+++.
T Consensus 232 ~~~~~~~ 238 (252)
T CHL00131 232 KTGDAEL 238 (252)
T ss_pred EecChhh
Confidence 9999874
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=383.08 Aligned_cols=213 Identities=23% Similarity=0.283 Sum_probs=181.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSDT---KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCCe---eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 58999999999753 599999999999999999999999999999999999999999999999887665555566779
Q ss_pred EEEccCCcC--c-------cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 211 GFVGQEPQL--L-------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 211 ~~v~Q~~~l--~-------~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
+|++|++.+ + ..|+++|+.++. ...+++.++++..++.+..+..+ .+|||||||||+||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV---KDPARCEQLAQQFGITALLDRRF---------KYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccch---hHHHHHHHHHHHcCCHhhhhCCc---------ccCCHHHHHHHHHH
Confidence 999998753 1 468888876531 12344556666666665554444 67999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|||+.+|++|||||||++||+.+++.+.+.|+++++ .|.|||+||||++.+.. ||+|++|++|+++..|+++++.+
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ---SGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999864 37899999999999876 99999999999999999988765
Q ss_pred c
Q 017091 361 K 361 (377)
Q Consensus 361 ~ 361 (377)
.
T Consensus 225 ~ 225 (490)
T PRK10938 225 Q 225 (490)
T ss_pred c
Confidence 3
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=348.10 Aligned_cols=195 Identities=29% Similarity=0.458 Sum_probs=157.5
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc-cCCcCc-cccH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG-QEPQLL-QMDI 224 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~l~-~~tv 224 (377)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|++ |++.++ ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 3699999999999999999999999999999999999999999999999986542 234567899998 556666 6899
Q ss_pred HHHHhcCCC-CCCCHHH----HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCC
Q 017091 225 KSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 299 (377)
Q Consensus 225 ~eni~~~~~-~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~ 299 (377)
+||+.+... .....++ +...++..++.+..+.. ...||||||||++|||||+.+|++|||||||++
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 183 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTP---------VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIG 183 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCC---------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 999875321 1111221 22233333433332222 256999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 300 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 300 LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
||+.+++.+.+.|+++.++ .+.|||++||+++.+.. ||++++|++|++++.|
T Consensus 184 LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 184 LDVVAQENIRNFLKEYNRE--RGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCHHHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999998642 47899999999999865 9999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-46 Score=337.99 Aligned_cols=193 Identities=24% Similarity=0.400 Sum_probs=161.6
Q ss_pred cEEEEEEEEEcCCC-CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC---CCCCeEEECCEeCCCCCHHHH
Q 017091 131 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWL 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~---p~~G~I~i~g~~i~~~~~~~~ 206 (377)
.+.++||+|.|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999753 24579999999999999999999999999999999999999 89999999999987653 345
Q ss_pred hcceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 207 REKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 207 r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
++.++|++|++.+| ..|++||+.++... . .+.. ...||||||||++|||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------~-----------~~~~---------~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC-------K-----------GNEF---------VRGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh-------c-----------cccc---------hhhCCHHHHHHHHHHHHHh
Confidence 67899999999877 47999999874210 0 1111 1469999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEe-cCchhHH-hcCeEEEEeCCEEEEEc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA-HRLSTIK-AVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~it-H~l~~~~-~~d~v~~l~~G~i~~~g 353 (377)
.+|++|||||||++||+.+++.+.+.|+++.++ .+.|+|+++ |+.+.+. .||++++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADV--LKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998642 255666655 5567775 59999999999998754
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-46 Score=336.22 Aligned_cols=196 Identities=23% Similarity=0.362 Sum_probs=166.5
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++||++.|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ..++++++
T Consensus 1 l~i~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDGR---ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCCc---eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 4789999999753 6999999999999999999999999999999999999999999999999876433 45677899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 290 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~i 290 (377)
|++|++.++ ..|++||+.+... ....+++.++++..++.++.+..+ .+||||||||++|||||+.+|++
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHA-DHSDEQVEEALARVGLNGFEDRPV---------AQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcc-cccHHHHHHHHHHcCChhhhcCch---------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999876 6899999987532 223445566667677665443332 57999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEE
Q 017091 291 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVI 344 (377)
Q Consensus 291 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l 344 (377)
+||||||++||+.+++.+.+.|+++++ .|.|+|++||+...+. .|++++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCA---RGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999998753 4789999999988775 58999877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-46 Score=337.41 Aligned_cols=196 Identities=22% Similarity=0.375 Sum_probs=161.6
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....++++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 789999999974 369999999999999999999999999999999999999999999999998864 3345678899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 290 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~i 290 (377)
|++|++.++ ..|++||+.++.........+.+.++..++.+..+. ...+|||||+||++||||++.+|++
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LS~G~~~rv~laral~~~p~~ 148 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDY---------PCGLLSSGQKRQVALLRLWMSKAKL 148 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhC---------ChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 999999886 689999998753111112233334444433332221 1257999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEE
Q 017091 291 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 343 (377)
Q Consensus 291 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~ 343 (377)
|||||||++||+.+++.+.+.|+++++ .|.|+|++||+.+.+..||.-++
T Consensus 149 lilDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 149 WLLDEPLVALDELSLLTIITKIQEHRA---KGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHHH---cCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999998853 47899999999999988987543
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-46 Score=332.06 Aligned_cols=173 Identities=30% Similarity=0.558 Sum_probs=156.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~ 209 (377)
.|+++|++++| +|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...+++
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 48999999988 7999999999999999999999999999999999999999999999999887653 345778
Q ss_pred eEEEccCC---cCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 210 IGFVGQEP---QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 210 i~~v~Q~~---~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
++|+||++ .++ ..|++||+.++.. ||||||||++||||++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHc
Confidence 99999995 344 5799999976410 7999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
.+|++|||||||++||+.+++.+.+.++++.+ ++.|+|++||+++.+.. ||++++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELAD---AGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999853 37899999999999876 999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-46 Score=335.28 Aligned_cols=184 Identities=35% Similarity=0.574 Sum_probs=161.1
Q ss_pred cEEEEEEEEEcCCCC---CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC--CCCCCeEEECCEeCCCCCHHH
Q 017091 131 HVQFVNISFHYPSRP---TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~---~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~g~~i~~~~~~~ 205 (377)
.|+++||+|+|++.. .+++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 389999999997520 146999999999999999999999999999999999999 9999999999998864 25
Q ss_pred HhcceEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 206 LREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 206 ~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
.++.++|+||++.+|. .|++||+.++.. . ..||||||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~-------~--------------------------~~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK-------L--------------------------RGLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH-------h--------------------------ccCCHHHHHHHHHHHHH
Confidence 5678999999998874 799999975310 0 04999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch-hHH-hcCeEEEEeCCEEEEEc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TIK-AVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~-~~~-~~d~v~~l~~G~i~~~g 353 (377)
+.+|+++||||||++||+.+++.+.+.|+++.+ +|+|+|++||+++ .+. .||++++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD---TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999853 3789999999997 565 49999999999998654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-46 Score=337.48 Aligned_cols=197 Identities=21% Similarity=0.320 Sum_probs=167.2
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 789999999974 36999999999999999999999999999999999999999999999999986543 34567899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCC-C-CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPK-D-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~-~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
|++|++.++ ..|+.||+.++... . ...+++.++++..++.++.+..+ ..||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPV---------RQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCCh---------hhcCHHHHHHHHHHHHHhcCC
Confidence 999999877 47999999765321 1 22345566677777766554433 579999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhc-CeEEEE
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVI 344 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~-d~v~~l 344 (377)
+++||||||++||+.+++.+.+.|+++++ .+.|+|++||+++++..| +|++++
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQHAE---QGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHH---CCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998853 378999999999999764 678776
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=345.11 Aligned_cols=193 Identities=32% Similarity=0.466 Sum_probs=160.9
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc-ccHHHHH
Q 017091 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNI 228 (377)
Q Consensus 150 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv~eni 228 (377)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|++|++.+|. .|+.||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999865432 2489999998885 7999999
Q ss_pred hcCCC---CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCC
Q 017091 229 MYGCP---KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 301 (377)
Q Consensus 229 ~~~~~---~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD 301 (377)
.++.. ...... .+.+.++..++.+..++.+ .+||||||||++|||||+.+|++|||||||++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 146 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRP---------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALD 146 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh---------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCC
Confidence 76421 111111 2334455555554444333 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHH
Q 017091 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 302 ~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l 358 (377)
+.+++.+.+.|.++.++ .|+|||+|||+++.+.. ||+|++|++|++++.|+..++
T Consensus 147 ~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 147 ALTRGNLQEELMQIWEE--HRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999999988642 37899999999999865 999999999999999887665
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-47 Score=329.90 Aligned_cols=224 Identities=26% Similarity=0.451 Sum_probs=194.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+++||+++|+++ .+|+++|++|++|.+++|+|||||||||||.+++++.++++|+|+++|.++..++.+++.+.+
T Consensus 1 MI~i~nv~K~y~~~---~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 1 MITIENVSKSYGTK---VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred CeeehhhhHhhCCE---EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHH
Confidence 37899999999864 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC----CC---HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKD----VK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~----~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
+.+-|+.++- ..||+|-+.||+.+. .+ ...+.++++...+.++-+++- .+||||||||.-||.
T Consensus 78 SILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryL---------d~LSGGQrQRAfIAM 148 (252)
T COG4604 78 SILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL---------DELSGGQRQRAFIAM 148 (252)
T ss_pred HHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhH---------Hhcccchhhhhhhhe
Confidence 9999998875 789999999986321 11 223445555555555444433 469999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
.++++.+.++||||.++||.+....+++.++++.++ -|+||++|-||++++.. +|+|+-|++|+++.+|+++++++.
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~e--l~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADE--LGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHH--hCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 999999999999999999999999999999999875 58999999999999975 999999999999999999999875
Q ss_pred CHHHHHHH
Q 017091 362 GRLYAKLV 369 (377)
Q Consensus 362 ~~~~~~~~ 369 (377)
+ ...++|
T Consensus 227 ~-~L~eiy 233 (252)
T COG4604 227 E-ILSEIY 233 (252)
T ss_pred H-HHHHHh
Confidence 4 344444
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-46 Score=388.83 Aligned_cols=220 Identities=25% Similarity=0.419 Sum_probs=177.3
Q ss_pred cEEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCC----------
Q 017091 131 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT---------- 199 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~---------- 199 (377)
.|+++|++++|+... ..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 599999999996421 236999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-cceEEEccCC--cCc-cccHHHHHhcCCCC--CCCH----HHHHHHHHHcCHH---HHHHhCCCCccc
Q 017091 200 DLDIR---WLR-EKIGFVGQEP--QLL-QMDIKSNIMYGCPK--DVKN----EDIEWAAKQAYVH---EFILSLPCGYET 263 (377)
Q Consensus 200 ~~~~~---~~r-~~i~~v~Q~~--~l~-~~tv~eni~~~~~~--~~~~----~~~~~~~~~~~l~---~~~~~~~~~~~~ 263 (377)
..+.. .+| +.||||+|+| .++ ..||.||+.++... .... +++.++++.+++. ..+++.
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~------ 165 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRY------ 165 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCC------
Confidence 12222 233 4799999998 566 47999999874211 1111 2233344444442 122222
Q ss_pred ccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEE
Q 017091 264 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIV 342 (377)
Q Consensus 264 ~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~ 342 (377)
..+|||||||||+|||||+.+|++|||||||++||+.+++++.++++++.++ .|+|||+||||++.+.. ||||+
T Consensus 166 ---~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~--~g~tvi~itHdl~~~~~~adri~ 240 (623)
T PRK10261 166 ---PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKE--MSMGVIFITHDMGVVAEIADRVL 240 (623)
T ss_pred ---CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEE
Confidence 3679999999999999999999999999999999999999999999998642 48899999999999865 99999
Q ss_pred EEeCCEEEEEcChHHHhhc
Q 017091 343 VIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 343 ~l~~G~i~~~g~~~~l~~~ 361 (377)
+|++|++++.|++++++..
T Consensus 241 vl~~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 241 VMYQGEAVETGSVEQIFHA 259 (623)
T ss_pred EeeCCeecccCCHHHhhcC
Confidence 9999999999999998753
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-46 Score=331.80 Aligned_cols=179 Identities=37% Similarity=0.583 Sum_probs=156.9
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 212 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 212 (377)
+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999974 369999999999999999999999999999999999999999999999999987777677778999
Q ss_pred EccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEE
Q 017091 213 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 292 (377)
Q Consensus 213 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ill 292 (377)
+|| +++..++.++++..+ ..||||||||++||||++.+|+++|
T Consensus 78 ~~q----------------------------~l~~~gl~~~~~~~~---------~~LS~G~~qrl~laral~~~p~lll 120 (180)
T cd03214 78 VPQ----------------------------ALELLGLAHLADRPF---------NELSGGERQRVLLARALAQEPPILL 120 (180)
T ss_pred HHH----------------------------HHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998 334445554444333 5699999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 293 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 293 lDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
|||||++||+.+.+.+.+.|.+++++ .+.|+|++||+++.+.. ||++++|++|++++.|
T Consensus 121 lDEP~~~LD~~~~~~~~~~l~~~~~~--~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 121 LDEPTSHLDIAHQIELLELLRRLARE--RGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999998642 26899999999999855 9999999999998653
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=334.08 Aligned_cols=186 Identities=32% Similarity=0.470 Sum_probs=162.0
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC--CCCCCCeEEECCEeCCCCCHHHH-hc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-RE 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--~~p~~G~I~i~g~~i~~~~~~~~-r~ 208 (377)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 478999999974 3699999999999999999999999999999999999 58999999999999987765443 45
Q ss_pred ceEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 209 KIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 209 ~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
.++|+||++.+++ .++++|+ ...+ ..||||||||++||||++.+
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l--------------------------~~~~---------~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL--------------------------RYVN---------EGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred cEEEeecChhhccCccHHHHH--------------------------hhcc---------ccCCHHHHHHHHHHHHHhcC
Confidence 6999999998875 4666654 1111 35999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH--hcCeEEEEeCCEEEEEcChHHHh
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK--AVDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~--~~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
|+++||||||++||+.+...+.+.|.++.+ +++|+|++||+++.+. .||++++|++|++++.|+ .++.
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~---~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~-~~~~ 192 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLRE---EGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGD-KELA 192 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEcc-HHHH
Confidence 999999999999999999999999999853 3789999999999987 599999999999999994 4443
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=344.95 Aligned_cols=221 Identities=26% Similarity=0.312 Sum_probs=168.7
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC--CCCCCeEEECCEeCCCCCHHHHh-c
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRWLR-E 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~g~~i~~~~~~~~r-~ 208 (377)
|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+....+ .
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999974 35999999999999999999999999999999999995 69999999999988766655443 5
Q ss_pred ceEEEccCCcCcc-ccHHHHHhcCCCC--CC-CHHHHHHHHHHcCHHHHHHhC--CCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLLQ-MDIKSNIMYGCPK--DV-KNEDIEWAAKQAYVHEFILSL--PCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~~-~tv~eni~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
.++|++|++.++. .|..+++.+.... .. ..+..........+.+.++.+ |.++.+......||||||||++|||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lar 158 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 158 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHH
Confidence 6999999997763 4555554321100 00 000000000001122233332 2122222112369999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh--cCeEEEEeCCEEEEEcChHHH
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~--~d~v~~l~~G~i~~~g~~~~l 358 (377)
|++.+|++|||||||++||+.+++.+.+.|+++++ .++|||++|||++.+.. ||+|++|++|++++.|+++.+
T Consensus 159 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~---~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRD---GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 99999999999999999999999999999998863 37899999999999875 799999999999999998754
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-46 Score=381.65 Aligned_cols=220 Identities=30% Similarity=0.453 Sum_probs=177.6
Q ss_pred cEEEEEEEEEcCCC-CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCCCCHH
Q 017091 131 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~~~~ 204 (377)
+|+++|++++|++. ..+++|+|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999631 124699999999999999999999999999999999999987 799999999998766543
Q ss_pred H---Hh-cceEEEccCCc--Cc-cccHHHHHhcCC--CCCCC----HHHHHHHHHHcCHHH---HHHhCCCCcccccCCC
Q 017091 205 W---LR-EKIGFVGQEPQ--LL-QMDIKSNIMYGC--PKDVK----NEDIEWAAKQAYVHE---FILSLPCGYETLVDDD 268 (377)
Q Consensus 205 ~---~r-~~i~~v~Q~~~--l~-~~tv~eni~~~~--~~~~~----~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~ 268 (377)
. .| +++||+||++. ++ ..|+.+|+.+.. ..... .+++.++++..++.+ ..++. ..
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---------~~ 155 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDY---------PH 155 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhC---------Cc
Confidence 2 23 57999999985 44 468999986421 00111 122334444444422 12222 26
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 347 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G 347 (377)
+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++++++ .|+|||+||||++.+.. ||||++|++|
T Consensus 156 ~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~dri~~l~~G 233 (529)
T PRK15134 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE--LNMGLLFITHNLSIVRKLADRVAVMQNG 233 (529)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh--cCCeEEEEcCcHHHHHHhcCEEEEEECC
Confidence 79999999999999999999999999999999999999999999998642 37899999999999875 9999999999
Q ss_pred EEEEEcChHHHhhc
Q 017091 348 RIIEVGNHAELLHK 361 (377)
Q Consensus 348 ~i~~~g~~~~l~~~ 361 (377)
++++.|++++++..
T Consensus 234 ~i~~~g~~~~~~~~ 247 (529)
T PRK15134 234 RCVEQNRAATLFSA 247 (529)
T ss_pred EEEEeCCHHHHhhC
Confidence 99999999988654
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-46 Score=333.58 Aligned_cols=183 Identities=25% Similarity=0.475 Sum_probs=159.6
Q ss_pred cEEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC--CCCCCeEEECCEeCCCCCHHHHh
Q 017091 131 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRWLR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~g~~i~~~~~~~~r 207 (377)
.|+++|+++.|++.. ++++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 489999999997421 146999999999999999999999999999999999986 489999999999875 3456
Q ss_pred cceEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 208 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
+.++|++|++.+|. .|++||+.++.. .+ .||||||||++||||++.
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~-----------~~----------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL-----------LR----------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH-----------Hh----------------------cCCHHHhHHHHHHHHHhc
Confidence 78999999998875 699999986310 00 499999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh-H-HhcCeEEEEeC-CEEEEEc
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-I-KAVDRIVVIDD-GRIIEVG 353 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~-~-~~~d~v~~l~~-G~i~~~g 353 (377)
+|++|||||||++||+.++..+.+.|+++++ .|+|+|++||+++. + ..||++++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLAD---SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH---cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999998863 37899999999984 5 45999999999 9998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-47 Score=321.56 Aligned_cols=205 Identities=27% Similarity=0.468 Sum_probs=171.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
++++++.+.-+ +.++|+|+||++.+||+++|+||||||||||+|+++-+.+|++|+++|.|++++.+++..+|++|+
T Consensus 4 le~kq~~y~a~---~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~Vs 80 (223)
T COG4619 4 LELKQVGYLAG---DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVS 80 (223)
T ss_pred hHHHHHHhhcC---CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHH
Confidence 44555543333 357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcCccccHHHHHhcCCC---CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCP---KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
|+.|.|.||..||+||+.|+.. .........+.++++++.+.+-.. ...+||||||||++|+|-|..-|
T Consensus 81 Y~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k--------~it~lSGGE~QriAliR~Lq~~P 152 (223)
T COG4619 81 YCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTK--------NITELSGGEKQRIALIRNLQFMP 152 (223)
T ss_pred HHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcc--------hhhhccchHHHHHHHHHHhhcCC
Confidence 9999999999999999988631 112223333344444433322111 12579999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH-HhcCeEEEEeCCEE
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRI 349 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~-~~~d~v~~l~~G~i 349 (377)
+|||||||||+||+.+.+.|.++|.++.++ ++..+++||||.+.. +.+|+++-+..|.+
T Consensus 153 ~ILLLDE~TsALD~~nkr~ie~mi~~~v~~--q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 153 KILLLDEITSALDESNKRNIEEMIHRYVRE--QNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred ceEEecCchhhcChhhHHHHHHHHHHHhhh--hceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 999999999999999999999999998753 578999999999984 66999999999876
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-46 Score=379.61 Aligned_cols=215 Identities=26% Similarity=0.381 Sum_probs=175.4
Q ss_pred EEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH-HHHhcceEE
Q 017091 134 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKIGF 212 (377)
Q Consensus 134 ~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~i~~ 212 (377)
++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ..+++.++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 4689999974 369999999999999999999999999999999999999999999999999875544 335678999
Q ss_pred EccCCcCc-cccHHHHHhcCCCC--C--CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 213 VGQEPQLL-QMDIKSNIMYGCPK--D--VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 213 v~Q~~~l~-~~tv~eni~~~~~~--~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
+||++.++ ..|++||+.++... . ....+.. ..+.++++.+...........+|||||||||+|||||+.+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~ 152 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMY-----RDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYN 152 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHH-----HHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhC
Confidence 99999776 67999999875321 1 1111111 1233444444322111222367999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
|++|||||||++||+.+...+.+.|+++.+ .|.|||+||||++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKE---RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 999999999999999999999999999853 47899999999999865 9999999999999999987763
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-46 Score=380.48 Aligned_cols=214 Identities=28% Similarity=0.425 Sum_probs=175.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~ 209 (377)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+. ..++++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 5899999999974 359999999999999999999999999999999999999999999999999865443 345678
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCC----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
|+|+||++.++ ..|+.||+.++.... ....+.. ..+.++++.+...........+||||||||++|||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral 155 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN-----YEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKAL 155 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHH-----HHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHH
Confidence 99999999887 479999998853211 1111111 1233445554332111222367999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcCh
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~ 355 (377)
+.+|++|||||||++||+.+.+.+.+.|+++.+ .|+|||+||||++.+.. ||+|++|++|+++..++.
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 156 ARNARVIAFDEPTSSLSAREIEQLFRVIRELRA---EGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999853 47899999999999865 999999999999877654
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-46 Score=382.22 Aligned_cols=219 Identities=30% Similarity=0.502 Sum_probs=178.4
Q ss_pred cEEEEEEEEEcCCC--------CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC
Q 017091 131 HVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 202 (377)
Q Consensus 131 ~i~~~~v~~~y~~~--------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~ 202 (377)
.|+++|++++|+.. .++++|+|+||+|++||+++|+||||||||||+|+|+|++ |++|+|+++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 59999999999621 1246999999999999999999999999999999999999 59999999999987655
Q ss_pred HH---HHhcceEEEccCC--cCc-cccHHHHHhcCCCCC---CC----HHHHHHHHHHcCHH-HHHHhCCCCcccccCCC
Q 017091 203 IR---WLREKIGFVGQEP--QLL-QMDIKSNIMYGCPKD---VK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDD 268 (377)
Q Consensus 203 ~~---~~r~~i~~v~Q~~--~l~-~~tv~eni~~~~~~~---~~----~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~ 268 (377)
.. .++++++|+||++ .++ ..|+.||+.++.... .. .+.+.+.++..++. +..++. ..
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~ 424 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY---------PA 424 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC---------Cc
Confidence 43 2466799999997 356 579999998642100 11 12233344444442 222322 36
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 347 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G 347 (377)
+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++++++ .|+|||+||||++.+.. ||+|++|++|
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK--HQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 79999999999999999999999999999999999999999999998642 37899999999999875 9999999999
Q ss_pred EEEEEcChHHHhhc
Q 017091 348 RIIEVGNHAELLHK 361 (377)
Q Consensus 348 ~i~~~g~~~~l~~~ 361 (377)
++++.|+++++++.
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999999764
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=315.15 Aligned_cols=215 Identities=30% Similarity=0.485 Sum_probs=184.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCC--CCC----HH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLD----IR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~--~~~----~~ 204 (377)
.|+++|++|.|+.. ++|.||+|+.+.||.+.++||||+|||||+|.|.=+.-|.+|+..|.|...+ ..+ ..
T Consensus 2 sirv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 48999999999864 6999999999999999999999999999999999999999999999886542 222 34
Q ss_pred HHhcceEEEccCCcCc-cccHHHHHhcC------CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 205 WLREKIGFVGQEPQLL-QMDIKSNIMYG------CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l~-~~tv~eni~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
++|+.+|+|||..+|+ .+||.||+.-. ...+....+..+.+++..+.++.+++|. .|||||+||
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~pl---------hlsggqqqr 149 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPL---------HLSGGQQQR 149 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCce---------ecccchhhh
Confidence 6889999999999998 68999998543 1111122334456677777778888774 599999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
|+|||||+.+|++|++||||++|||+-..++.++|+++.. .|.|-++|||..+.++. |.+|+.|++|+|++.|++.
T Consensus 150 vaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~---tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh---cCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 9999999999999999999999999999999999999974 59999999999999987 9999999999999999987
Q ss_pred HHhh
Q 017091 357 ELLH 360 (377)
Q Consensus 357 ~l~~ 360 (377)
.+-+
T Consensus 227 ~ft~ 230 (242)
T COG4161 227 CFTE 230 (242)
T ss_pred hccC
Confidence 6644
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=341.11 Aligned_cols=200 Identities=31% Similarity=0.439 Sum_probs=161.8
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC----CCCeEEECCEeCCCCCHHHHhcceEEEccCCc-Cc--c
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ-LL--Q 221 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p----~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-l~--~ 221 (377)
+++|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++... ...++.++|++|++. .| .
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999988643 222357999999985 34 3
Q ss_pred ccHHHHHhcCCCC-CC-C---HHHHHHHHHHcCHH---HHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEE
Q 017091 222 MDIKSNIMYGCPK-DV-K---NEDIEWAAKQAYVH---EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLL 293 (377)
Q Consensus 222 ~tv~eni~~~~~~-~~-~---~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illl 293 (377)
.|+.+|+.+.... .. . .+++.+.++..++. +..+. ....|||||||||+||||++.+|++|||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~~LS~G~~qrv~laral~~~p~vllL 149 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKK---------YPFQLSGGMLQRVMIALALLLEPPFLIA 149 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhC---------ChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 6999998643210 11 1 11233334444332 11221 1257999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 294 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 294 DEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||||++||+.+++.+.+.|++++++ .|+|||++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 150 DEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 150 DEPTTDLDVVNQARVLKLLRELRQL--FGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999998642 37899999999999965 999999999999999999999754
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=364.86 Aligned_cols=218 Identities=31% Similarity=0.429 Sum_probs=180.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~ 209 (377)
.++++|++|+|++ .++|+||||++.+||++||+|+||||||||+|+|+|.|+|++|+|++||+++...++.+ ....
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 5899999999985 47999999999999999999999999999999999999999999999999998777654 4567
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
|+.|+|+..|+ ++||.|||.+|..+.....-+.+..-.....+.++.+....+-.....+||.||||.|+||||+..++
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~a 164 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDA 164 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999998 78999999988643221000111111112334455443321111112579999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
+|||||||||+|+....+.+++.++++++ +|.++|+|||+++++.. ||||.||+||+.+...+
T Consensus 165 rllIlDEPTaaLt~~E~~~Lf~~ir~Lk~---~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 165 RVLILDEPTAALTVKETERLFDLIRRLKA---QGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999999999999999999999999974 59999999999999976 99999999999998877
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=335.72 Aligned_cols=198 Identities=24% Similarity=0.319 Sum_probs=163.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNEE---PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCCc---eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 58999999999753 599999999999999999999999999999999999999999999999988642 335579
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCCC-CC-CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 211 GFVGQEPQLLQ-MDIKSNIMYGCPK-DV-KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 211 ~~v~Q~~~l~~-~tv~eni~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
+|++|++.++. .|++||+.+.... .. ..+.....++..++.+..+.. ...||||||||++||||++.+
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTL---------VRQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCC---------hhhCCHHHHHHHHHHHHHhcC
Confidence 99999998885 6999999764211 11 122233344444443333222 257999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 346 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~ 346 (377)
|+++||||||++||+.+++.+.+.++++.+ +|.|+|++|||++.+.. ||++++++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 156 APLWLLDEPYANLDLEGITLVNRMISAHLR---GGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998864 37899999999999965 999999864
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=377.53 Aligned_cols=216 Identities=26% Similarity=0.436 Sum_probs=176.7
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC--CCCeEEECCEeCCCCCHHH-Hhc
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRW-LRE 208 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i~~~~~~~-~r~ 208 (377)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999964 3699999999999999999999999999999999999987 7999999999987665543 456
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcCHHHHHHhCCCCccc-ccCCCCCChHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYET-LVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~LSgGq~QRv~iA 281 (377)
.++|+||++.++ ..|++||+.++.... ...++.. ..+.++++.+...... .....+|||||||||+||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA 153 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY-----LRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIA 153 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH-----HHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHH
Confidence 799999999877 579999998753211 1111111 1233445554332111 122367999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHH
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l 358 (377)
|||+.+|++|||||||++||+.+...+.+.|+++++ .|.|||+||||++.+.. ||+|++|++|+++..++++++
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 154 KALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA---HGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999999999863 48899999999999875 999999999999999987654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-46 Score=339.70 Aligned_cols=197 Identities=34% Similarity=0.539 Sum_probs=171.9
Q ss_pred cEEEEEEEEEcCCCC------CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH
Q 017091 131 HVQFVNISFHYPSRP------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~ 204 (377)
.++++|+++.|+... ...+++||||+|++||+++|||+||||||||-|+|+|+++|++|+|+++|+++..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 589999999997432 136999999999999999999999999999999999999999999999999976654
Q ss_pred HHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 205 WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
.....+++.+.++.+++.+ ++.++| ++|||||+||++||||
T Consensus 82 -----------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP---------helSGGQrQRi~IARA 123 (268)
T COG4608 82 -----------------------------KEERRERVLELLEKVGLPEEFLYRYP---------HELSGGQRQRIGIARA 123 (268)
T ss_pred -----------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC---------cccCchhhhhHHHHHH
Confidence 1122455777788877644 667777 7899999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|+.+|+++++|||+|+||...+.++.+++.+++++ .|.|.++||||++.++. ||||.||..|+|+|.|+.++++.+.
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~--~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p 201 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE--LGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNP 201 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH--hCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCC
Confidence 99999999999999999999999999999999875 58999999999999987 9999999999999999999998763
Q ss_pred -HHHHHHH
Q 017091 363 -RLYAKLV 369 (377)
Q Consensus 363 -~~~~~~~ 369 (377)
..|.+.+
T Consensus 202 ~HpYTk~L 209 (268)
T COG4608 202 LHPYTKAL 209 (268)
T ss_pred CCHHHHHH
Confidence 4465543
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=322.26 Aligned_cols=163 Identities=36% Similarity=0.542 Sum_probs=147.9
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 4789999999642 36999999999999999999999999999999999999999999999873 5799
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 291 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~il 291 (377)
|++|++.+++.|++||+.++ . ..+||||||||++||||++.+|+++
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~-------------------------~---------~~~LS~G~~~rv~laral~~~p~~l 113 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP-------------------------W---------DDVLSGGEQQRLAFARLLLHKPKFV 113 (166)
T ss_pred EECCCCccccccHHHHhhcc-------------------------C---------CCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999988888999999763 1 1569999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCC
Q 017091 292 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG 347 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G 347 (377)
||||||++||+.+++.+.+.++++ +.|+|++|||++....||++++|+++
T Consensus 114 llDEPt~~LD~~~~~~l~~~l~~~------~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 114 FLDEATSALDEESEDRLYQLLKEL------GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred EEECCccccCHHHHHHHHHHHHHh------CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 999999999999999999999875 47999999999877679999999875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=378.19 Aligned_cols=223 Identities=25% Similarity=0.421 Sum_probs=173.7
Q ss_pred cEEEEEEEEEcCC--CCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEEC-CEe---CCCCC--
Q 017091 131 HVQFVNISFHYPS--RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID-GFP---LTDLD-- 202 (377)
Q Consensus 131 ~i~~~~v~~~y~~--~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~-g~~---i~~~~-- 202 (377)
.|+++||+++|++ ...+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999953 112469999999999999999999999999999999999999999999996 643 33222
Q ss_pred -HHHHhcceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCc-----ccccCCCCCChHHH
Q 017091 203 -IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY-----ETLVDDDLLSGGQK 275 (377)
Q Consensus 203 -~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~LSgGq~ 275 (377)
...++++|+|+||++.++ ..|+.||+.++.......+... ..+.++++.+.... .......+||||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~ 433 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR-----MKAVITLKMVGFDEEKAEEILDKYPDELSEGER 433 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHH-----HHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence 123466799999999877 5799999975321111111100 11223333332211 00112367999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
|||+|||||+.+|++|||||||++||+.+.+.+.+.|++++++ .|.|||+||||++.+.. ||++++|++|++++.|+
T Consensus 434 qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 434 HRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE--MEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998642 37899999999999875 99999999999999999
Q ss_pred hHHHhh
Q 017091 355 HAELLH 360 (377)
Q Consensus 355 ~~~l~~ 360 (377)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 888754
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=319.89 Aligned_cols=160 Identities=36% Similarity=0.559 Sum_probs=147.5
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH-HHhcce
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREKI 210 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~i 210 (377)
|+++|++++|++. ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..++.+
T Consensus 1 l~~~~l~~~~~~~---~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGGV---KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECCe---EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 4789999999753 699999999999999999999999999999999999999999999999998876653 456789
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 290 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~i 290 (377)
+|+|| ||||||||++||||++.+|++
T Consensus 78 ~~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 78 AMVYQ------------------------------------------------------LSVGERQMVEIARALARNARL 103 (163)
T ss_pred EEEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99998 799999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEE
Q 017091 291 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 351 (377)
Q Consensus 291 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~ 351 (377)
+||||||++||+.+++.+.+.|+++.+ ++.|+|++|||++.+.. ||++++|++|++++
T Consensus 104 lllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKVIRRLRA---QGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999853 37899999999998865 99999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-46 Score=323.18 Aligned_cols=209 Identities=30% Similarity=0.450 Sum_probs=175.0
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
.++.+++++.+|++.+ ..+|+|+|++|.+||.++++||||||||||+++++|+.+|+.|+|.+||.++..-.. .
T Consensus 2 ~~l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----e 75 (259)
T COG4525 2 CMLNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----E 75 (259)
T ss_pred ceeehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----c
Confidence 3578899999998763 569999999999999999999999999999999999999999999999999976432 3
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCC-CCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPKD-VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~~-~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
-|.|||++.|+ -.++.||+.||.... ..+ +...+.+..+++.++-++++ .+||||||||+.||||
T Consensus 76 rgvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i---------~qLSGGmrQRvGiARA 146 (259)
T COG4525 76 RGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYI---------WQLSGGMRQRVGIARA 146 (259)
T ss_pred ceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccce---------EeecchHHHHHHHHHH
Confidence 49999999988 589999999985321 111 22223344455544433333 5799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe--CCEEEEEcCh
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID--DGRIIEVGNH 355 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~--~G~i~~~g~~ 355 (377)
|+-+|++|+||||+++||.-++++++++|.++.+. .|+.+++||||++++-. ++++++|+ .|+|++.-++
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~--tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQE--TGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHH--hCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 99999999999999999999999999999888764 58999999999999875 99999998 5899876544
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-46 Score=379.22 Aligned_cols=221 Identities=24% Similarity=0.412 Sum_probs=177.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-CCCCeEEECCEeCCCCCH-HHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFPLTDLDI-RWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p~~G~I~i~g~~i~~~~~-~~~r~ 208 (377)
.|+++||++.|+..++.++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...+. ...++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5999999999953112469999999999999999999999999999999999998 599999999999865443 34567
Q ss_pred ceEEEccCC---cCc-cccHHHHHhcCCCCCC------CHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHH
Q 017091 209 KIGFVGQEP---QLL-QMDIKSNIMYGCPKDV------KNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQR 277 (377)
Q Consensus 209 ~i~~v~Q~~---~l~-~~tv~eni~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~LSgGq~QR 277 (377)
.++|+||++ .++ ..|+.||+.++..... .... ....+.++++.+... ........+||||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqr 413 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA-----ELKTILESIQRLKVKTASPELAIARLSGGNQQK 413 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH-----HHHHHHHHHHhcCccCCCcccccccCCHHHHHH
Confidence 799999996 355 5799999987521000 1111 111234455554331 11122246899999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
|+|||||+.+|++|||||||++||+.+++.+.+.|.++++ +|+|||++|||++.+.. ||++++|++|+++..|+++
T Consensus 414 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 490 (506)
T PRK13549 414 AVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ---QGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINH 490 (506)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccc
Confidence 9999999999999999999999999999999999999864 48899999999999875 9999999999999999888
Q ss_pred HHh
Q 017091 357 ELL 359 (377)
Q Consensus 357 ~l~ 359 (377)
++.
T Consensus 491 ~~~ 493 (506)
T PRK13549 491 NLT 493 (506)
T ss_pred cCC
Confidence 763
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-45 Score=347.34 Aligned_cols=225 Identities=31% Similarity=0.493 Sum_probs=192.3
Q ss_pred cEEEEEEEEEcCCCC--------CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC
Q 017091 131 HVQFVNISFHYPSRP--------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 202 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~--------~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~ 202 (377)
.++.+||...|+-+. ...++++|||++++||.+||||+||||||||-++|++++++. |+|.|+|+++..++
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 599999999996432 145899999999999999999999999999999999999766 99999999999887
Q ss_pred HH---HHhcceEEEccCCc--Cc-cccHHHHHhcCCC---CCC----CHHHHHHHHHHcCHHHH-HHhCCCCcccccCCC
Q 017091 203 IR---WLREKIGFVGQEPQ--LL-QMDIKSNIMYGCP---KDV----KNEDIEWAAKQAYVHEF-ILSLPCGYETLVDDD 268 (377)
Q Consensus 203 ~~---~~r~~i~~v~Q~~~--l~-~~tv~eni~~~~~---~~~----~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~ 268 (377)
.+ .+|+++-.|||||+ |- .+||.+-|.-|.. +.. .++++.++++.+|++.- ..++| +
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP---------h 425 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP---------H 425 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC---------c
Confidence 65 46789999999996 32 5899998876642 111 24456667777777543 34555 7
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 347 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G 347 (377)
++|||||||+|||||++.+|++++||||||+||..-+.++.++|++++++ .|.+-++||||+..++. ||+|+||++|
T Consensus 426 EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k--~~LsYLFISHDL~VvrAl~~~viVm~~G 503 (534)
T COG4172 426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK--HGLSYLFISHDLAVVRALCHRVIVMRDG 503 (534)
T ss_pred ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHH--hCCeEEEEeccHHHHHHhhceEEEEeCC
Confidence 89999999999999999999999999999999999999999999999874 68999999999999987 9999999999
Q ss_pred EEEEEcChHHHhhcC-HHHHH
Q 017091 348 RIIEVGNHAELLHKG-RLYAK 367 (377)
Q Consensus 348 ~i~~~g~~~~l~~~~-~~~~~ 367 (377)
+|+|+|+.++++++. ..|.+
T Consensus 504 kiVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 504 KIVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred EEeeeCCHHHHhcCCCcHHHH
Confidence 999999999999874 34654
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=332.81 Aligned_cols=197 Identities=23% Similarity=0.327 Sum_probs=165.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||++.|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .. .++++
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~ 75 (207)
T PRK13539 2 MLEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEAC 75 (207)
T ss_pred EEEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhc
Confidence 4899999999974 359999999999999999999999999999999999999999999999998642 22 67789
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
+|++|++.++ ..|++||+.+... .....+++.++++..++.++.+..+ .+||||||||++||||++.+|
T Consensus 76 ~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 76 HYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPF---------GYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred EEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCCh---------hhcCHHHHHHHHHHHHHhcCC
Confidence 9999988776 6899999976421 1122344556666666655443322 579999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeC
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~ 346 (377)
+++||||||++||+.+.+.+.+.|+++++ +|.|+|++||+++.+.. |+++.++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLA---QGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999999998753 37899999999999987 99988854
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=377.49 Aligned_cols=215 Identities=26% Similarity=0.423 Sum_probs=174.0
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC--CCCCCeEEEC---------------
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYID--------------- 194 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~G~I~i~--------------- 194 (377)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999964 36999999999999999999999999999999999997 7999999997
Q ss_pred --------CEeCC-------CCCH---HHHhcceEEEccC-CcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcC
Q 017091 195 --------GFPLT-------DLDI---RWLREKIGFVGQE-PQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAY 249 (377)
Q Consensus 195 --------g~~i~-------~~~~---~~~r~~i~~v~Q~-~~l~-~~tv~eni~~~~~-~~~~----~~~~~~~~~~~~ 249 (377)
|.++. ..+. ..+|+.++|+||+ +.+| ..|++||+.++.. .... .+++.++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 22221 1111 2346779999998 5666 4799999986421 1111 123344555555
Q ss_pred HHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEe
Q 017091 250 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 329 (377)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~it 329 (377)
+.+..++.+ .+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.|+++.++ .|+|||+||
T Consensus 158 l~~~~~~~~---------~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tviivt 226 (520)
T TIGR03269 158 LSHRITHIA---------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA--SGISMVLTS 226 (520)
T ss_pred ChhhhhcCc---------ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEe
Confidence 554444433 679999999999999999999999999999999999999999999998542 478999999
Q ss_pred cCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 330 HRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 330 H~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
||++.+.. ||+|++|++|+++..|+++++..
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 99999875 99999999999999999888754
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-45 Score=335.41 Aligned_cols=202 Identities=28% Similarity=0.421 Sum_probs=158.5
Q ss_pred EEEEEEEEEcCCC---C-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEEC--CE--eCCCCCH
Q 017091 132 VQFVNISFHYPSR---P-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID--GF--PLTDLDI 203 (377)
Q Consensus 132 i~~~~v~~~y~~~---~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~--g~--~i~~~~~ 203 (377)
|+++|++++|+.. . ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1 1369999999999999999999999999999999999999999999998 42 5544443
Q ss_pred HH---H-hcceEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChH
Q 017091 204 RW---L-REKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 273 (377)
Q Consensus 204 ~~---~-r~~i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgG 273 (377)
.. + ++.++|+||++.++ ..|+.||+.+... ..... +++.++++..++.+... .....+||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--------~~~~~~LS~G 153 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW--------HLPPATFSGG 153 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh--------hCCcccCCHH
Confidence 32 2 45799999999887 5799999975321 11111 12222333333322111 1123679999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEE
Q 017091 274 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVI 344 (377)
Q Consensus 274 q~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l 344 (377)
||||++|||||+.+|+++||||||++||+.+++.+.+.|+++++ +|+|+|++||+++.+. .||+++.+
T Consensus 154 ~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 154 EQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA---RGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999999999999999999999853 3789999999999886 49999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-46 Score=333.28 Aligned_cols=215 Identities=22% Similarity=0.481 Sum_probs=182.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.+++++|+++|++. .+++|+||++++|++.+++|||||||||.+|+|+|+++|++|+|.|+|.+++. ..+.+|
T Consensus 2 ~L~ie~vtK~Fg~k---~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGDK---KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccCce---eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 48999999999854 69999999999999999999999999999999999999999999999998864 346789
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
||+|.+.-|+ .+||.|.+.|... ......++. ..+..|++++...........+||.|.+|+|.+-.|++++|
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~-----~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHeP 149 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ-----KKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEP 149 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCC
Confidence 9999999998 6899999987321 112222221 23455666654322222223579999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
+++|||||+|||||.+.+.+.+.+.++++ .|.|||++||+|+.++. ||+++.|++|+.|-+|+.+++.+
T Consensus 150 eLlILDEPFSGLDPVN~elLk~~I~~lk~---~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 150 ELLILDEPFSGLDPVNVELLKDAIFELKE---EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred CEEEecCCccCCChhhHHHHHHHHHHHHh---cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 99999999999999999999999999975 59999999999999987 99999999999999999999876
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=375.95 Aligned_cols=214 Identities=18% Similarity=0.339 Sum_probs=172.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~ 209 (377)
.|+++|+++.|. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+. ..+++.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 599999998762 38999999999999999999999999999999999999999999999998865443 345678
Q ss_pred eEEEccCC---cCc-cccHHHHHhcCCCCC----------CCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHH
Q 017091 210 IGFVGQEP---QLL-QMDIKSNIMYGCPKD----------VKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQ 274 (377)
Q Consensus 210 i~~v~Q~~---~l~-~~tv~eni~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~LSgGq 274 (377)
|||+||++ .++ ..|++||+.++.... ..... ....+.++++.+... ........+|||||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 414 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD-----EQRTAENQRELLALKCHSVNQNITELSGGN 414 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHH-----HHHHHHHHHHhcCCCCCCccCccccCChHH
Confidence 99999984 466 579999998752100 01111 111233445554321 11122246799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
||||+|||||+.+|++|||||||++||+.+.+.+.+.|+++++ .|.|||+||||++.+.. ||++++|++|++++.+
T Consensus 415 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 491 (510)
T PRK09700 415 QQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD---DGKVILMVSSELPEIITVCDRIAVFCEGRLTQIL 491 (510)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999999999999864 48899999999999865 9999999999999988
Q ss_pred ChHH
Q 017091 354 NHAE 357 (377)
Q Consensus 354 ~~~~ 357 (377)
+..+
T Consensus 492 ~~~~ 495 (510)
T PRK09700 492 TNRD 495 (510)
T ss_pred cCcc
Confidence 7633
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-45 Score=328.98 Aligned_cols=195 Identities=24% Similarity=0.330 Sum_probs=161.7
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 478999999975 36999999999999999999999999999999999999999999999999887654 34567899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCC-CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 289 (377)
|++|++.++ ..|+.||+.+.... ......+.++++..++.++++..+ .+||||||||++||||++.+|+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPA---------AQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCCh---------hhcCHHHHHHHHHHHHHhcCCC
Confidence 999998887 48999999764211 111234566677777766654433 5799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEE
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 343 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~ 343 (377)
++||||||++||+.+++.+.+.|.++.+ .|.|+|++||+...+ .|++++.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAHLA---RGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEEcccccc-cceEEee
Confidence 9999999999999999999999998853 478999999998543 2455543
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-45 Score=326.48 Aligned_cols=176 Identities=31% Similarity=0.481 Sum_probs=146.1
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC--CCHHHHhcceEEEccCC--cCccc
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREKIGFVGQEP--QLLQM 222 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--~~~~~~r~~i~~v~Q~~--~l~~~ 222 (377)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....+++.++|+||++ .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 369999999999999999999999999999999999999999999999998852 12335567899999998 46678
Q ss_pred cHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcC
Q 017091 223 DIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 297 (377)
Q Consensus 223 tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPt 297 (377)
|++||+.++.. ..... +++.++++..++.++.++.+ .+||||||||++|||||+.+|+++||||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~llllDEPt 155 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT---------HCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999987421 11121 23444555666655555444 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh
Q 017091 298 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 334 (377)
Q Consensus 298 s~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~ 334 (377)
++||+.+++.+.+.|+++++ +|+|||++||+++.
T Consensus 156 ~~LD~~~~~~~~~~l~~~~~---~~~tili~sH~~~~ 189 (190)
T TIGR01166 156 AGLDPAGREQMLAILRRLRA---EGMTVVISTHDVDL 189 (190)
T ss_pred ccCCHHHHHHHHHHHHHHHH---cCCEEEEEeecccc
Confidence 99999999999999999864 37899999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=336.90 Aligned_cols=212 Identities=23% Similarity=0.367 Sum_probs=169.1
Q ss_pred cEEEEEEEEEcCCC-----------------CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE
Q 017091 131 HVQFVNISFHYPSR-----------------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 193 (377)
Q Consensus 131 ~i~~~~v~~~y~~~-----------------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i 193 (377)
.++++||++.|... ..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 47788888877431 1246999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCC-CCCCHHHHH----HHHHHcCHHHHHHhCCCCcccccCC
Q 017091 194 DGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIE----WAAKQAYVHEFILSLPCGYETLVDD 267 (377)
Q Consensus 194 ~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~ 267 (377)
+|. +++++|++.++ ..|+.+|+.++.. .....++.. ..++..++.++++.. .
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~ 141 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQP---------V 141 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC---------c
Confidence 984 45677777665 5799999975311 112222222 223333333333222 3
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC
Q 017091 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 346 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~ 346 (377)
.+|||||+||++||||++.+|++|||||||++||+.+.+.+.+.|.++++ .|+|+|++||+++.+.. ||+|++|++
T Consensus 142 ~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~---~g~tiIiisH~~~~i~~~~d~i~~l~~ 218 (264)
T PRK13546 142 KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE---QNKTIFFVSHNLGQVRQFCTKIAWIEG 218 (264)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHHcCEEEEEEC
Confidence 67999999999999999999999999999999999999999999998853 47899999999999875 999999999
Q ss_pred CEEEEEcChHHHhhcCHHHHH
Q 017091 347 GRIIEVGNHAELLHKGRLYAK 367 (377)
Q Consensus 347 G~i~~~g~~~~l~~~~~~~~~ 367 (377)
|++++.|+++++.+....|.+
T Consensus 219 G~i~~~g~~~~~~~~~~~~~~ 239 (264)
T PRK13546 219 GKLKDYGELDDVLPKYEAFLN 239 (264)
T ss_pred CEEEEeCCHHHHHHHhHHHHH
Confidence 999999999998876444433
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=353.04 Aligned_cols=217 Identities=28% Similarity=0.452 Sum_probs=183.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH-HHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~ 209 (377)
.+++++++|.||+ ..+++||||+|++||+.||+|+||||||||+++|.|+|+|++|+|++||+++.-.++. ..+..
T Consensus 4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 4899999999984 4799999999999999999999999999999999999999999999999998766664 56778
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
||+|+|++.|+ +.||.|||.+|...... ..+.....+..+.+..++++...+-......||-||||||.|-+||+++|
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~-~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a 159 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKG-GLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGA 159 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccc-cccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCC
Confidence 99999999998 68999999998643211 00111112223455566665555444444679999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
++||||||||-|-|...+++++.++++++ .|+|||+|||.++++.. |||+-||++|+++...+
T Consensus 160 ~iLILDEPTaVLTP~E~~~lf~~l~~l~~---~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 160 RLLILDEPTAVLTPQEADELFEILRRLAA---EGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999975 59999999999999976 99999999999876554
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-45 Score=371.49 Aligned_cols=224 Identities=22% Similarity=0.379 Sum_probs=174.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-CCCeEEECCEeCCCCCH-HHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDI-RWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i~g~~i~~~~~-~~~r~ 208 (377)
.|+++|++++|+++.+..+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++...+. ..+++
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 59999999999421123699999999999999999999999999999999999995 89999999999865433 45677
Q ss_pred ceEEEccCC---cCc-cccHHHHHhcCCCCCCCH-HHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEP---QLL-QMDIKSNIMYGCPKDVKN-EDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~---~l~-~~tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~LSgGq~QRv~iAr 282 (377)
++||+||++ .++ ..|+++|+.++....... ...........+.++++.+.... ........||||||||++|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~ 416 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAK 416 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHH
Confidence 899999996 356 579999998752110000 00000001112344455543321 112223679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHH
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~ 357 (377)
||+.+|++|||||||++||+.+++.+.+.|+++++ .|.|||++|||++.+.. ||++++|++|+++..++.++
T Consensus 417 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 417 MLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ---EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999864 47899999999999975 99999999999998876544
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-44 Score=356.80 Aligned_cols=213 Identities=25% Similarity=0.350 Sum_probs=172.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+++++|++|.|++...+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+. .+
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~----------~i 90 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA----------LI 90 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee----------eE
Confidence 58999999999764334699999999999999999999999999999999999999999999999751 12
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCHHH----HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
+ +.+.++ ..|++||+.+... .....++ +..+++.+++.++++..+ ..||||||||++|||||
T Consensus 91 ~---~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~---------~~LSGGQrQRVaLArAL 158 (549)
T PRK13545 91 A---ISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPV---------KTYSSGMKSRLGFAISV 158 (549)
T ss_pred E---eccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCc---------ccCCHHHHHHHHHHHHH
Confidence 2 233333 4799999976321 1122222 233455555555544433 67999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcCH
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGR 363 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~~ 363 (377)
+.+|++|||||||++||+.++..+.+.|.++++ .|+|||++|||++.+.. ||++++|++|++++.|+++++...-.
T Consensus 159 ~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~---~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~ 235 (549)
T PRK13545 159 HINPDILVIDEALSVGDQTFTKKCLDKMNEFKE---QGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD 235 (549)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHH
Confidence 999999999999999999999999999998853 47899999999999875 99999999999999999999877644
Q ss_pred HHHHH
Q 017091 364 LYAKL 368 (377)
Q Consensus 364 ~~~~~ 368 (377)
.|.+.
T Consensus 236 ~~~~~ 240 (549)
T PRK13545 236 EFLKK 240 (549)
T ss_pred HHHHH
Confidence 44443
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=331.04 Aligned_cols=196 Identities=26% Similarity=0.450 Sum_probs=159.8
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcC---ccccHHHHHhcC
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL---LQMDIKSNIMYG 231 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l---~~~tv~eni~~~ 231 (377)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+++++|+||++.+ +..|+.||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998753 245679999999876 357999999765
Q ss_pred CCC------CC---CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCH
Q 017091 232 CPK------DV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302 (377)
Q Consensus 232 ~~~------~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~ 302 (377)
... .. ..+++..+++..++.++.+..+ .+||||||||++|||||+.+|+++||||||++||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV---------GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 210 00 1123344455555544433322 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 017091 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 369 (377)
Q Consensus 303 ~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 369 (377)
.+++.+.+.|+++++ +|.|+|++||+++.+.. ||+++++ +|++++.|+++++.++. .+.+.+
T Consensus 147 ~~~~~l~~~l~~~~~---~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~~-~~~~~~ 209 (223)
T TIGR03771 147 PTQELLTELFIELAG---AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDPA-PWMTTF 209 (223)
T ss_pred HHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcChH-HHHHHh
Confidence 999999999999863 37899999999998865 9999999 89999999999987653 344444
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=331.18 Aligned_cols=197 Identities=26% Similarity=0.355 Sum_probs=156.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.+.++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ....
T Consensus 22 ~l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~ 93 (224)
T cd03220 22 KLGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGG 93 (224)
T ss_pred hhhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----cccc
Confidence 3788999999975 3699999999999999999999999999999999999999999999999875311 1111
Q ss_pred EEEccCCcCccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
++ ....|++||+.++.. ...... .+.++++..++.+.++.. ...||||||||++||||++
T Consensus 94 ~~------~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgG~~qrv~laral~ 158 (224)
T cd03220 94 GF------NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLP---------VKTYSSGMKARLAFAIATA 158 (224)
T ss_pred cC------CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC---------hhhCCHHHHHHHHHHHHHh
Confidence 11 135799999976421 111111 122333333433333222 2579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
.+|+++||||||++||+.+++.+.+.|+++.+ +|.|||++||+++.+.. ||++++|++|++++.|
T Consensus 159 ~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 159 LEPDILLIDEVLAVGDAAFQEKCQRRLRELLK---QGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999998864 37899999999999865 9999999999998764
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=322.61 Aligned_cols=190 Identities=22% Similarity=0.364 Sum_probs=157.2
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++ +.++ ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 789999999964 2355 599999999999999999999999999999999999999999999875432 34599
Q ss_pred EEccCCcC-ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 017091 212 FVGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 290 (377)
Q Consensus 212 ~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~i 290 (377)
|++|++.+ +..|++||+.+........+.+..+++..++.+..++.+ .+||||||||++||||++.+|++
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~~rl~la~al~~~p~~ 144 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKC---------YSLSSGMQKIVAIARLIACQSDL 144 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccCh---------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 99998765 478999999874321112334555556666655444332 57999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeE
Q 017091 291 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 291 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
+||||||++||+.+++.+.+.+++..+ .+.|+|++||+++.++.+|-+
T Consensus 145 lllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 145 WLLDEVETNLSKENRDLLNNLIVMKAN---SGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCccccchhhee
Confidence 999999999999999999999986542 478999999999999888865
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-44 Score=401.82 Aligned_cols=217 Identities=18% Similarity=0.379 Sum_probs=184.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+|+|+++ .+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. .....++.|
T Consensus 1937 ~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1937 ILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred eEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 59999999999752 2469999999999999999999999999999999999999999999999999864 344567789
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
||+||++.++ ..|++||+.+... ..... +.+.+.++..++.++.++.+ ..||||||||++|||||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~---------~~LSGGqKqRLslA~AL 2085 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA---------GTYSGGNKRKLSTAIAL 2085 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 9999999888 5899999975311 11111 22334555666655554443 57999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+.+|+||||||||+|||+.+++.+++.|+++++ +|+|||++||++++++. ||||++|++|+++..|+++++.++
T Consensus 2086 i~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~---~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2086 IGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR---EGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 999999999999999999999999999999864 48899999999999976 999999999999999999998543
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=328.93 Aligned_cols=201 Identities=29% Similarity=0.516 Sum_probs=180.0
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC----HHHHhcceEEEccCCcCc-cccH
Q 017091 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLREKIGFVGQEPQLL-QMDI 224 (377)
Q Consensus 150 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~~r~~i~~v~Q~~~l~-~~tv 224 (377)
-=+++|+.+.-.++||-|+||||||||+|+|+|+.+|++|.|.+||.-+.+.. ...-+++|||||||..|| .+||
T Consensus 14 ~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 14 ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 34788998887899999999999999999999999999999999998775432 223467899999999999 6899
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHH
Q 017091 225 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304 (377)
Q Consensus 225 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~ 304 (377)
+.|+.||.+. .+..+..+..+..++..+++++| ..|||||||||+|+|||+..|++||+|||.|+||...
T Consensus 94 rgNL~YG~~~-~~~~~fd~iv~lLGI~hLL~R~P---------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 94 RGNLRYGMWK-SMRAQFDQLVALLGIEHLLDRYP---------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred ecchhhhhcc-cchHhHHHHHHHhCcHHHHhhCC---------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 9999999653 35667778888999999999999 6799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 305 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 305 ~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
+++++-.|++++++ -+.-|++|||.++++.+ ||+|++|++|++.+.|..++++...
T Consensus 164 K~EilpylERL~~e--~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 164 KREILPYLERLRDE--INIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hhHHHHHHHHHHHh--cCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 99999999999875 47889999999999876 9999999999999999999998754
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-44 Score=400.58 Aligned_cols=216 Identities=24% Similarity=0.400 Sum_probs=182.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||++.|+++ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. .....|+.+
T Consensus 928 ~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 928 GVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred eEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 59999999999632 2469999999999999999999999999999999999999999999999999864 345667889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
||+||++.+| ..||+||+.+... .... .+++.+.++..++.+..++. ..+|||||||||+|||||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~---------~~~LSGGqKQRLsLArAL 1076 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEE---------AQDLSGGMQRKLSVAIAF 1076 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC---------hhhCCHHHHHHHHHHHHH
Confidence 9999999888 5799999986421 1111 12233444444444433332 267999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+.+|++|||||||+|||+.+++.+.+.|++++ +|+|||++||+++++.. ||||++|++|+++..|+++++.++
T Consensus 1077 i~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~----~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1077 VGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999999999999999999999999999983 37899999999999976 999999999999999999988653
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=365.82 Aligned_cols=213 Identities=24% Similarity=0.436 Sum_probs=172.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH-HHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~ 209 (377)
.++++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .++++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 588999973 279999999999999999999999999999999999999999999999998765543 35678
Q ss_pred eEEEccCC---cCc-cccHHHHHhcCCCCC-------CCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHH
Q 017091 210 IGFVGQEP---QLL-QMDIKSNIMYGCPKD-------VKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQR 277 (377)
Q Consensus 210 i~~v~Q~~---~l~-~~tv~eni~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~LSgGq~QR 277 (377)
+||+||++ .++ ..|+.||+.++.... ....+ ....+.++++.+... .........||||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqr 403 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHAD-----EQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQK 403 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHH-----HHHHHHHHHHhcCCCCCCccCchhhCCHHHHHH
Confidence 99999997 355 589999998742100 01111 011234455554321 11122236799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
|+|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +|.|||++|||++.+.. ||+|++|++|+++..|+++
T Consensus 404 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 480 (501)
T PRK10762 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA---EGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTRE 480 (501)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccc
Confidence 9999999999999999999999999999999999999864 38899999999999875 9999999999999999887
Q ss_pred HHh
Q 017091 357 ELL 359 (377)
Q Consensus 357 ~l~ 359 (377)
++.
T Consensus 481 ~~~ 483 (501)
T PRK10762 481 QAT 483 (501)
T ss_pred cCC
Confidence 763
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=369.81 Aligned_cols=217 Identities=35% Similarity=0.492 Sum_probs=182.0
Q ss_pred cEEEEEEEEEcCCC-CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH---
Q 017091 131 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL--- 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~--- 206 (377)
+|+++|++++|++. ..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+..++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 58999999999642 12469999999999999999999999999999999999999999999999999987765543
Q ss_pred -hcceEEEccCCcCc-cccHHHHHhcCCCC-CCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 207 -REKIGFVGQEPQLL-QMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 207 -r~~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
++.++|+||++.+| ..|+.||+.+.... ... .++..+.++..++.+.++..+ .+|||||+||++
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~---------~~LS~Gq~qrv~ 154 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP---------SQLSGGQQQRVS 154 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCc---------ccCCHHHHHHHH
Confidence 56899999999988 47999999763210 111 112233444445444444333 679999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHh
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
|||||+++|++|||||||++||+.+++.+.+.++++++ +|+|+|++||+++.+..||++++|++|++++.|++++..
T Consensus 155 LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~---~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 155 IARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD---RGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999999999863 478999999999988789999999999999999998775
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-44 Score=364.09 Aligned_cols=214 Identities=24% Similarity=0.362 Sum_probs=172.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH-HHHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~ 209 (377)
.++++|+++. .+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ...++.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4889999731 38999999999999999999999999999999999999999999999998865433 345678
Q ss_pred eEEEccCCc---Cc-cccHHHHHhcCCCCCC-------CHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHH
Q 017091 210 IGFVGQEPQ---LL-QMDIKSNIMYGCPKDV-------KNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQR 277 (377)
Q Consensus 210 i~~v~Q~~~---l~-~~tv~eni~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~LSgGq~QR 277 (377)
++|+||++. +| ..|+.||+.++..... .... ....+.++++.+... ........+||||||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 404 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRW-----EAENADRFIRSLNIKTPSREQLIMNLSGGNQQK 404 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHH-----HHHHHHHHHHhcCcccCCccCccccCCHHHHHH
Confidence 999999973 55 6899999987532110 1100 011233445554321 11122246899999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
|+|||||+.+|++|||||||+|||+.+++.+.++|.++.+ .|.|||+||||++.+.. ||++++|++|+++..|+++
T Consensus 405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~ 481 (501)
T PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA---QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELARE 481 (501)
T ss_pred HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999999999999999999864 47899999999999965 9999999999999999887
Q ss_pred HHh
Q 017091 357 ELL 359 (377)
Q Consensus 357 ~l~ 359 (377)
+..
T Consensus 482 ~~~ 484 (501)
T PRK11288 482 QAT 484 (501)
T ss_pred cCC
Confidence 654
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=361.33 Aligned_cols=202 Identities=22% Similarity=0.379 Sum_probs=168.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. +.+
T Consensus 319 ~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDNG---PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeCCc---eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 59999999999743 5999999999999999999999999999999999999999999999873 469
Q ss_pred EEEccCCc--Cc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCH-HHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 211 GFVGQEPQ--LL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYV-HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 211 ~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
||++|++. ++ ..|+.+|+.+........+++...++..++ .+..+..+ .+||||||||++||||++.
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSV---------KVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcc---------cccCHHHHHHHHHHHHHhc
Confidence 99999974 44 479999986521111223344555555555 23333322 6799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEE-EEcChHHHhhc
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELLHK 361 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~-~~g~~~~l~~~ 361 (377)
+|++|||||||++||+.+.+.+.+.|+++ +.|||+||||++.+.. ||++++|++|+++ ..|+++++++.
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~------~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY------EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 99999999999999999999999999876 2499999999999876 9999999999998 77888887654
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=361.37 Aligned_cols=209 Identities=24% Similarity=0.432 Sum_probs=165.3
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. ..||
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999974 36999999999999999999999999999999999999999999999872 3599
Q ss_pred EEccCCcCc-cccHHHHHhcCCCC---------------CCCHH---HHHHH----------HHHcCHHHHHHhCCCCcc
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPK---------------DVKNE---DIEWA----------AKQAYVHEFILSLPCGYE 262 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~---------------~~~~~---~~~~~----------~~~~~l~~~~~~~~~~~~ 262 (377)
|++|++.++ ..|++||+.++... ..... .+.+. .....+.+.++.+.....
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 999999877 57999999864210 00000 00000 001123344554432211
Q ss_pred c-ccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCe
Q 017091 263 T-LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDR 340 (377)
Q Consensus 263 ~-~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~ 340 (377)
. .....+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+ .|.|||+||||++.+.. ||+
T Consensus 148 ~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~------~~~tiiivsHd~~~~~~~~d~ 221 (530)
T PRK15064 148 QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE------RNSTMIIISHDRHFLNSVCTH 221 (530)
T ss_pred HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh------CCCeEEEEeCCHHHHHhhcce
Confidence 1 112367999999999999999999999999999999999999999998863 26899999999999875 999
Q ss_pred EEEEeCCEEE-EEcChHHHhh
Q 017091 341 IVVIDDGRII-EVGNHAELLH 360 (377)
Q Consensus 341 v~~l~~G~i~-~~g~~~~l~~ 360 (377)
|++|++|+++ ..|+++++++
T Consensus 222 i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 222 MADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEEEeCCEEEEecCCHHHHHH
Confidence 9999999994 7899887764
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-43 Score=361.41 Aligned_cols=210 Identities=27% Similarity=0.423 Sum_probs=166.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+++||+++|+++ +++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ +..|
T Consensus 6 ~l~i~~l~~~y~~~--~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPPK--KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCCC--CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 59999999999721 3699999999999999999999999999999999999999999999975 1369
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCC---------------CCCHH----------HHHHHHH-------HcCHHHHHHhC
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPK---------------DVKNE----------DIEWAAK-------QAYVHEFILSL 257 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~---------------~~~~~----------~~~~~~~-------~~~l~~~~~~~ 257 (377)
|||||++.++ ..|+.||+.++... ..... ++.+..+ ...+.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 9999999887 57999999875210 00000 0000010 11233444444
Q ss_pred CCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh
Q 017091 258 PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 337 (377)
Q Consensus 258 ~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~ 337 (377)
.... ......+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++ +.|||+||||++.+..
T Consensus 153 gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~------~~tviiisHd~~~~~~ 225 (556)
T PRK11819 153 RCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY------PGTVVAVTHDRYFLDN 225 (556)
T ss_pred CCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC------CCeEEEEeCCHHHHHh
Confidence 3221 12223679999999999999999999999999999999999999999999876 2499999999999976
Q ss_pred -cCeEEEEeCCEEE-EEcChHHHhh
Q 017091 338 -VDRIVVIDDGRII-EVGNHAELLH 360 (377)
Q Consensus 338 -~d~v~~l~~G~i~-~~g~~~~l~~ 360 (377)
||+|++|++|+++ ..|+++++.+
T Consensus 226 ~~d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 226 VAGWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred hcCeEEEEeCCEEEEecCCHHHHHH
Confidence 9999999999986 7788887654
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=360.24 Aligned_cols=215 Identities=19% Similarity=0.333 Sum_probs=172.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH-Hhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~-~r~~ 209 (377)
.|+++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... .+++
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 589999983 1699999999999999999999999999999999999999999999999987665543 4567
Q ss_pred eEEEccCC---cCc-cccHHHHHhcCC----CCCCCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHHHHHHH
Q 017091 210 IGFVGQEP---QLL-QMDIKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 210 i~~v~Q~~---~l~-~~tv~eni~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~LSgGq~QRv~i 280 (377)
|+|+||++ .+| ..|+.+|+.... ........ ....+.++++.+... .........|||||||||+|
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~l 414 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAR-----ENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLI 414 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHH-----HHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHH
Confidence 99999985 356 579999985321 00001111 111234455554322 11122236799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++|||||||++||+.+++.+.+.|+++++ .|.|||+||||++.+.. ||++++|++|+++..|+++++.
T Consensus 415 a~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~---~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 415 AKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA---QNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 9999999999999999999999999999999999864 37899999999999976 9999999999999999988775
Q ss_pred hc
Q 017091 360 HK 361 (377)
Q Consensus 360 ~~ 361 (377)
.+
T Consensus 492 ~~ 493 (510)
T PRK15439 492 VD 493 (510)
T ss_pred HH
Confidence 43
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=339.32 Aligned_cols=184 Identities=32% Similarity=0.502 Sum_probs=154.5
Q ss_pred EEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCC-CCCH----
Q 017091 165 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPK-DVKN---- 238 (377)
Q Consensus 165 ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~~---- 238 (377)
|+||||||||||+|+|+|+++|++|+|.++|+++...+. .+++++|+||++.+| ..|++||+.++... ....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999876554 356899999999988 57999999876321 1111
Q ss_pred HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 239 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
+++.++++..++.++.++.| .+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++.++
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKP---------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHcCCcchhcCCh---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 22334455555544444433 679999999999999999999999999999999999999999999998653
Q ss_pred CCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 319 CKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
.|.|+|+||||++++.. ||+|++|++|++++.|+++++++.
T Consensus 150 --~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 150 --LGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred --cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 47899999999999865 999999999999999999999865
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=366.54 Aligned_cols=202 Identities=27% Similarity=0.453 Sum_probs=164.8
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC--CCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-ccc
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMD 223 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~--~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~t 223 (377)
+++|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||+++.. ..++++|||+|++.++ ..|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 46999999999999999999999999999999999999885 9999999998742 3456799999999988 579
Q ss_pred HHHHHhcCC----CCCCCHHHHHHHHHHcCHHHHHHhCCCC--cccccC---CCCCChHHHHHHHHHHHHcCCCCEEEEe
Q 017091 224 IKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILSLPCG--YETLVD---DDLLSGGQKQRIAIARAILRDPAILLLD 294 (377)
Q Consensus 224 v~eni~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~---~~~LSgGq~QRv~iAral~~~p~illlD 294 (377)
|+||+.+.. +...+.++.. ..++++++.+... .++.++ ...||||||||++|||||+.+|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKI-----LVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHH-----HHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999998742 1112222211 1123344443321 244443 2579999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh-H-HhcCeEEEEeCCEEEEEcChHHHhh
Q 017091 295 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-I-KAVDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 295 EPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~-~-~~~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|||+|||+.++..+.+.|+++.+ +|+|||++||+++. + +.||++++|++|++++.|+++++.+
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~---~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQ---KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHh---CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999999999999864 48999999999984 5 4599999999999999999988753
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=322.62 Aligned_cols=196 Identities=25% Similarity=0.373 Sum_probs=156.5
Q ss_pred EEcCCCCCCCceeeeeEEEe-----CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 017091 139 FHYPSRPTVPILNHVCLTIE-----ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 213 (377)
Q Consensus 139 ~~y~~~~~~~vL~~isl~i~-----~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 213 (377)
|+|++. ...+++++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .|+|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 457643 347888888886 69999999999999999999999999999999999984 59999
Q ss_pred ccCCcC-ccccHHHHHhcCCCCC-CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 017091 214 GQEPQL-LQMDIKSNIMYGCPKD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 291 (377)
Q Consensus 214 ~Q~~~l-~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~il 291 (377)
+|++.. +..|++||+.+..... .......+.++..++.+..++.+ .+|||||||||+|||||+.+|+++
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---------~~LSgGe~qrv~iaraL~~~p~ll 137 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREV---------PELSGGELQRVAIAACLSKDADIY 137 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999875 5789999997532111 11222344555555555444333 579999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEE--EEcChHHHh
Q 017091 292 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII--EVGNHAELL 359 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~--~~g~~~~l~ 359 (377)
||||||++||+.++..+.+.|+++.++ .++|||+||||++.+.. ||+|++|+++..+ ..++++++.
T Consensus 138 llDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 138 LLDEPSAYLDVEQRLMASKVIRRFAEN--NEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 999999999999999999999998642 47899999999999975 9999999765433 445666654
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=354.90 Aligned_cols=210 Identities=27% Similarity=0.415 Sum_probs=166.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+++||+++|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~~--~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPPK--KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCCC--CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 48999999999722 3699999999999999999999999999999999999999999999875 1369
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCC----------------CCCH---------HHHHHHHHHcC-------HHHHHHhC
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPK----------------DVKN---------EDIEWAAKQAY-------VHEFILSL 257 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~----------------~~~~---------~~~~~~~~~~~-------l~~~~~~~ 257 (377)
||+||++.++ +.|+.||+.++... .... .++.+.++..+ +.++++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 9999999887 57999999875210 0000 11222222222 22334443
Q ss_pred CCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh
Q 017091 258 PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 337 (377)
Q Consensus 258 ~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~ 337 (377)
.... ......+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++ +.|||+||||++.+..
T Consensus 151 ~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~------~~tvIiisHd~~~~~~ 223 (552)
T TIGR03719 151 RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY------PGTVVAVTHDRYFLDN 223 (552)
T ss_pred CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC------CCeEEEEeCCHHHHHh
Confidence 3211 11223679999999999999999999999999999999999999999998875 2499999999999976
Q ss_pred -cCeEEEEeCCEEE-EEcChHHHhh
Q 017091 338 -VDRIVVIDDGRII-EVGNHAELLH 360 (377)
Q Consensus 338 -~d~v~~l~~G~i~-~~g~~~~l~~ 360 (377)
||+|++|++|+++ ..|+++++.+
T Consensus 224 ~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 224 VAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred hcCeEEEEECCEEEEecCCHHHHHH
Confidence 9999999999976 6788887654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=327.69 Aligned_cols=228 Identities=30% Similarity=0.438 Sum_probs=187.1
Q ss_pred cEEEEEEEEEcCCC-CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCeEEECCEeCCCCCHH
Q 017091 131 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-----~~G~I~i~g~~i~~~~~~ 204 (377)
.++++|+++.|... ....++++|||+|++||.+||||+||||||-..+.++|+++. -+|+|.++|.++-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 58999999999632 235799999999999999999999999999999999999964 379999999999888877
Q ss_pred HHh----cceEEEccCCcCc--c-ccHHHHH----hcCC--CCCCCHHHHHHHHHHcCHHH---HHHhCCCCcccccCCC
Q 017091 205 WLR----EKIGFVGQEPQLL--Q-MDIKSNI----MYGC--PKDVKNEDIEWAAKQAYVHE---FILSLPCGYETLVDDD 268 (377)
Q Consensus 205 ~~r----~~i~~v~Q~~~l~--~-~tv~eni----~~~~--~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~ 268 (377)
++| .+|+++||+|.-- + .||...| .+.. ......+++.+.++.+++.+ .++.+| +
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP---------H 156 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP---------H 156 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC---------c
Confidence 665 3699999999532 2 3655444 3321 11222344555666666533 344455 7
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 347 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G 347 (377)
+|||||||||.||.||+.+|++||.||||.+||..-+.+|+++|++++++ .|.++++||||+..++. ||||+||.+|
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~--~gMa~lfITHDL~iVr~~ADrV~VM~~G 234 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAE--LGMAILFITHDLGIVRKFADRVYVMQHG 234 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH--hCcEEEEEeccHHHHHHhhhhEEEEecc
Confidence 89999999999999999999999999999999999999999999999875 59999999999999987 9999999999
Q ss_pred EEEEEcChHHHhhc-CHHHHHHH
Q 017091 348 RIIEVGNHAELLHK-GRLYAKLV 369 (377)
Q Consensus 348 ~i~~~g~~~~l~~~-~~~~~~~~ 369 (377)
+++|.|+.++++.. ...|.+.+
T Consensus 235 ~ivE~~~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 235 EIVETGTTETLFAAPQHPYTRKL 257 (534)
T ss_pred EEeecCcHHHHhhCCCChHHHHH
Confidence 99999999999976 34576544
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=355.02 Aligned_cols=209 Identities=22% Similarity=0.319 Sum_probs=164.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-CCCeEEECCEeCCC-CCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTD-LDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i~g~~i~~-~~~~~~r~ 208 (377)
.|+++|+++.|++. .+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++.. ......++
T Consensus 260 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYNDR---PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECCe---eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 59999999999743 599999999999999999999999999999999999876 79999999987632 22334567
Q ss_pred ceEEEccCCcCc-c--ccHHHHHhcCCCC------CCCH---HHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHH
Q 017091 209 KIGFVGQEPQLL-Q--MDIKSNIMYGCPK------DVKN---EDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQK 275 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~--~tv~eni~~~~~~------~~~~---~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~LSgGq~ 275 (377)
+|+|++|++.++ . .++.+++.++... .... +.+.+.++..++.+ ..+. ...+||||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~~LSgGq~ 407 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADA---------PFHSLSWGQQ 407 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccC---------chhhCCHHHH
Confidence 899999998654 2 4677776543110 0111 12233333443332 2222 2367999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-h-cCeEEEEeCCEEEEEc
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-A-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~-~d~v~~l~~G~i~~~g 353 (377)
|||+|||||+.+|++|||||||+|||+.+.+.+.+.|++++++ .+.|||+||||++.+. . ||++++|++|++++.-
T Consensus 408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~--~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE--GETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc--CCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999999999999999998642 2357999999999986 3 7999999999998754
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=355.32 Aligned_cols=214 Identities=22% Similarity=0.375 Sum_probs=168.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH-HHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~ 209 (377)
.|+++|+++.| +++|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.++...+.. .+++.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 59999999874 1499999999999999999999999999999999999999999999999998766543 34677
Q ss_pred eEEEccCCc---Cc-cccHHHHH-----hcCCCC-C-CCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHHHHH
Q 017091 210 IGFVGQEPQ---LL-QMDIKSNI-----MYGCPK-D-VKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQKQR 277 (377)
Q Consensus 210 i~~v~Q~~~---l~-~~tv~eni-----~~~~~~-~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~LSgGq~QR 277 (377)
++|+||++. +| ..|+.+|. .+.... . ....... ..+.++++.+..+. .......+||||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 399 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSMRVKTPGHRTQIGSLSGGNQQK 399 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhcCccCCCcccccccCCcHHHHH
Confidence 999999863 45 46776663 221110 0 0111111 11233444443221 1122346899999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChH
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 356 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~ 356 (377)
|+||||++.+|+||||||||+|||+.+++.+.+.|.++.+ .|.|||++|||++.+.. |||+++|++|+++..++.+
T Consensus 400 v~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~---~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 400 VIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK---KDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH---CCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999999999999999999864 47899999999999875 9999999999999888765
Q ss_pred H
Q 017091 357 E 357 (377)
Q Consensus 357 ~ 357 (377)
+
T Consensus 477 ~ 477 (491)
T PRK10982 477 T 477 (491)
T ss_pred c
Confidence 3
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-43 Score=326.59 Aligned_cols=203 Identities=24% Similarity=0.288 Sum_probs=157.5
Q ss_pred EEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEE-----------ECCEeCCCCCH
Q 017091 135 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-----------IDGFPLTDLDI 203 (377)
Q Consensus 135 ~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~-----------i~g~~i~~~~~ 203 (377)
.||+|+|+++ ..+|+|+|+ +++||+++|+||||||||||+|+|+|+++|++|+|. ++|+++.....
T Consensus 4 ~~~~~~y~~~--~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecCc--chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 4789999743 259999995 999999999999999999999999999999999996 78888765432
Q ss_pred HHHh--cceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 204 RWLR--EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 204 ~~~r--~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
...+ ..++|++|++.+++.++.+|+..........+...++++..++.+..+.. ..+||||||||++||
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~---------~~~LS~G~~qrv~la 151 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRN---------IDQLSGGELQRVAIA 151 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCC---------hhhCCHHHHHHHHHH
Confidence 2222 24789999887776566666654321111123334444444443333222 257999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
||++.+|+++||||||++||+.++..+.+.|+++++ .++|||++||+++.+.. ||+|++|+ |++.+.|
T Consensus 152 ral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~---~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 152 AALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE---DDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999999999864 37899999999999975 99999995 6666543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=291.43 Aligned_cols=143 Identities=35% Similarity=0.612 Sum_probs=133.3
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
++++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++
T Consensus 1 l~~~~l~~~~~~~---~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGGK---LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECCc---eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 4789999999753 5999999999999999999999999999999999999999999999984 3699
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 291 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~il 291 (377)
|+|| ||+||+||++||||++++|+++
T Consensus 67 ~~~~------------------------------------------------------lS~G~~~rv~laral~~~p~il 92 (144)
T cd03221 67 YFEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNLL 92 (144)
T ss_pred EEcc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 9998 7999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCE
Q 017091 292 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 348 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~ 348 (377)
||||||++||+.++..+.+.++++ ++|+|++||+++.+.. ||++++|++|+
T Consensus 93 llDEP~~~LD~~~~~~l~~~l~~~------~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 93 LLDEPTNHLDLESIEALEEALKEY------PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHc------CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999876 3599999999999965 99999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=309.85 Aligned_cols=187 Identities=19% Similarity=0.251 Sum_probs=147.8
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEE-ECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHH
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-IDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKS 226 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~-i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~e 226 (377)
+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|. ++|..+. +.+++.+| ..|++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~-------------~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP-------------LGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec-------------cccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 7775321 23456666 479999
Q ss_pred HHhcCCC-CCCCHHHHHH-HHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHH
Q 017091 227 NIMYGCP-KDVKNEDIEW-AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304 (377)
Q Consensus 227 ni~~~~~-~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~ 304 (377)
|+.+... .....++... ..+..++.+..+..+ ..||||||||++||||++.+|+++||||||+++|+.+
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~ 139 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRV---------SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNAT 139 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchH---------hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH
Confidence 9976421 1122222222 122233333332222 5699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 305 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 305 ~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
++.+.+.+.+.. +++|+|++||+++.+.. ||++++|++|++++.++.++..+.
T Consensus 140 ~~~~~~~l~~~~----~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 193 (213)
T PRK15177 140 QLRMQAALACQL----QQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATAL 193 (213)
T ss_pred HHHHHHHHHHHh----hCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHH
Confidence 999999876542 24689999999999865 999999999999999998887643
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=350.00 Aligned_cols=195 Identities=25% Similarity=0.300 Sum_probs=164.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++++|++++|++ ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ ..+
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 5999999999964 25999999999999999999999999999999999999999999985 149
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 289 (377)
+|+||++.++ ..||+||+.++...........++++..++.+..++.+ .+|||||||||+|||||+.+|+
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~---------~~LSGGe~QRvaiAraL~~~p~ 473 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNV---------KDLSGGELQRVAIAACLSRDAD 473 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCc---------ccCCHHHHHHHHHHHHHhcCCC
Confidence 9999998765 78999999875221111223445666666665555444 6799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
+|||||||++||+.++..+.+.|+++.++ .|.|+|+||||++++.. |||+++|++ ++...|+
T Consensus 474 llLLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 474 LYLLDEPSAHLDVEQRLAVAKAIRRIAEE--REATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999998643 47899999999999875 999999965 8877776
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=306.35 Aligned_cols=212 Identities=25% Similarity=0.419 Sum_probs=174.1
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH-HHHhc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLRE 208 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~ 208 (377)
..|+++||++.|+++ ++|+|+|++|++||..+|+||||||||||+++++|.++|++|.+.+.|+.....+. .++|+
T Consensus 30 ~li~l~~v~v~r~gk---~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 30 PLIELKNVSVRRNGK---KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred ceEEecceEEEECCE---eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 359999999999764 69999999999999999999999999999999999999999999999999987666 88999
Q ss_pred ceEEEccCCcC-c--cccHHHHHhcCC------CC-CCCHHH---HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 017091 209 KIGFVGQEPQL-L--QMDIKSNIMYGC------PK-DVKNED---IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 275 (377)
Q Consensus 209 ~i~~v~Q~~~l-~--~~tv~eni~~~~------~~-~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~ 275 (377)
+||+|+-.-.. | +.+++|-+.-|. .. ..++++ ..+.++..++.+..++ .-..||-|||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r---------~~~~LS~Ge~ 177 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR---------PFGSLSQGEQ 177 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccC---------chhhcCHhHH
Confidence 99999865422 2 567888775432 22 233332 2233444444443222 1257999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
|||.|||||+.+|++|||||||+|||...++.+.+.|.++... ..+.++|+|||..+++.. .++++.+++|+++..|.
T Consensus 178 rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~-~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 178 RRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS-PGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcC-CCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999999998653 346799999999999976 69999999999998773
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=355.35 Aligned_cols=203 Identities=28% Similarity=0.477 Sum_probs=169.5
Q ss_pred CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC---CCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-c
Q 017091 146 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-Q 221 (377)
Q Consensus 146 ~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~ 221 (377)
++++|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.+||.++. ...+++.+|||+|++.++ .
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 357999999999999999999999999999999999999885 899999999875 345678899999999888 5
Q ss_pred ccHHHHHhcCCCC----CCCHHHHHHHHHHcCHHHHHHhCCC--CcccccCC----CCCChHHHHHHHHHHHHcCCCCEE
Q 017091 222 MDIKSNIMYGCPK----DVKNEDIEWAAKQAYVHEFILSLPC--GYETLVDD----DLLSGGQKQRIAIARAILRDPAIL 291 (377)
Q Consensus 222 ~tv~eni~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~----~~LSgGq~QRv~iAral~~~p~il 291 (377)
+||+||+.|+... ....++ +...+++.++.++. ..++.++. ..|||||||||+|||||+.+|+++
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKE-----KRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL 188 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHH-----HHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence 7999999875321 112221 12234455555443 34666663 369999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch-hH-HhcCeEEEEeCCEEEEEcChHHHh
Q 017091 292 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TI-KAVDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~-~~-~~~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
+|||||+|||+.+...+++.|+++.+ +|+|+|+++|+++ .+ ..+|++++|++|++++.|+++++.
T Consensus 189 llDEPtsgLD~~~~~~l~~~L~~l~~---~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQ---KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred EeeCCCcchhHHHHHHHHHHHHHHHh---CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 99999999999999999999999864 4899999999996 44 569999999999999999998874
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=346.52 Aligned_cols=202 Identities=22% Similarity=0.335 Sum_probs=163.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + ..|
T Consensus 324 ~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 324 VIEAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred EEEEEeEEEEECCe---eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 59999999999743 599999999999999999999999999999999999999999999954 2 159
Q ss_pred EEEccCC-cCc-cccHHHHHhcCCCC-CC--CHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEP-QLL-QMDIKSNIMYGCPK-DV--KNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~-~l~-~~tv~eni~~~~~~-~~--~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
||+||++ .++ ..|+.||+.++... .. ........++..++.. ..+ ....+||||||||++||||+
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~~LSgG~~qrv~la~al 460 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQ---------KKVGVLSGGERNRLHLAKTL 460 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhc---------CchhhCCHHHHHHHHHHHHH
Confidence 9999997 555 57999999875321 11 1112222333333321 111 12367999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC-CEEE-EEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-GRII-EVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~-G~i~-~~g~~~~l~~~ 361 (377)
+.+|++|||||||++||+.+...+.+.|.++ .+ |||+||||++.+.. ||+|++|++ |++. ..|+.++++++
T Consensus 461 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 461 KQGGNVLLLDEPTNDLDVETLRALEEALLEF-----PG-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-----CC-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999999999999999999999886 24 89999999999875 999999996 7887 47888877654
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=299.78 Aligned_cols=219 Identities=26% Similarity=0.422 Sum_probs=179.8
Q ss_pred EEEEEEEEEcCCC--CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 132 VQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 132 i~~~~v~~~y~~~--~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
+++.|+.+.|... ..+++|+++|++|++|+++.|+|.||||||||++.|+|-++|++|+|.|||.+++.++.......
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~ 81 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhH
Confidence 4566777766422 13579999999999999999999999999999999999999999999999999999998887788
Q ss_pred eEEEccCCc--Cc-cccHHHHHhcCCCC----CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHH
Q 017091 210 IGFVGQEPQ--LL-QMDIKSNIMYGCPK----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAI 280 (377)
Q Consensus 210 i~~v~Q~~~--l~-~~tv~eni~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~i 280 (377)
++-|||+|. .+ ++||.||+.++..+ ..+.. .....+....+.+..++.|+.-.+.. .-|||||||-+++
T Consensus 82 larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~--ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSA--LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred HHHHhcchhhCCcccccHHHHHHHHHhcCcccccchh--hhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence 999999995 34 78999999874321 11111 11112223445567778887766653 4699999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcC
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~ 354 (377)
+.|.++.|+||+|||-|++|||.+.+.+++.=.++.++ .+.|.+||||+++.+- +.+|.++|++|+|+.+-+
T Consensus 160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~--~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEE--HKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHh--cCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 99999999999999999999999999999998887764 4789999999999874 589999999999997644
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=295.02 Aligned_cols=227 Identities=23% Similarity=0.428 Sum_probs=188.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECC-EeCCCCCHHHH-hc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG-FPLTDLDIRWL-RE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g-~~i~~~~~~~~-r~ 208 (377)
.++++||+++|++- .+|+++||++.+||.-+|+|||||||||++..|+|..+|++|+++++| .++..++...+ |.
T Consensus 5 iL~~~~vsVsF~GF---~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGGF---KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcce---eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 58999999999863 699999999999999999999999999999999999999999999999 89998887654 56
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHH----HHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
.||--||.|..| +.||+||+.+....+.+-... ....++..+++.+.....+.........||.||||++.|++-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMl 161 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGML 161 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhhee
Confidence 799999999999 789999998754322211000 011222334444444433333333346799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
++++|++|+||||++|+-.....+.-++|+.++ .+++|++|.|||.+++. |++|-||+.|++...|+.+++-++.
T Consensus 162 l~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la----~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~dp 237 (249)
T COG4674 162 LAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA----GKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237 (249)
T ss_pred eccCCcEEEecCccCCCcHHHHHHHHHHHHHHh----cCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcCc
Confidence 999999999999999999999999999999995 35799999999999986 9999999999999999999997765
Q ss_pred HH
Q 017091 363 RL 364 (377)
Q Consensus 363 ~~ 364 (377)
..
T Consensus 238 ~V 239 (249)
T COG4674 238 KV 239 (249)
T ss_pred ce
Confidence 43
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=289.24 Aligned_cols=232 Identities=28% Similarity=0.458 Sum_probs=185.0
Q ss_pred cEEEEEEEEEcCCC------CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH
Q 017091 131 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~ 204 (377)
-++++|++++|..+ ....+++.|||++++|+.+||+|.||||||||.|+|+|..+|++|+|++||+++...+..
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 47889999887532 124689999999999999999999999999999999999999999999999998766666
Q ss_pred HHhcceEEEccCCcC-cc--ccHHHHHhcCCC--CC----CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 017091 205 WLREKIGFVGQEPQL-LQ--MDIKSNIMYGCP--KD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 275 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l-~~--~tv~eni~~~~~--~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~ 275 (377)
.+.++|-++||||+- |+ ..|-.-+..+.. .+ ...+++.+.++.+|+ +|+ .+...++.||-|||
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL------~Pd--han~~~~~la~~QK 155 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL------LPD--HANYYPHMLAPGQK 155 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhcc------Ccc--ccccchhhcCchhH
Confidence 666789999999963 32 333333332211 11 123344445555544 332 23334467999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
||||+||||+.+|+|+|.||+.++||...+.++.++..++.++ .|.+-|.|+.++..++. +|+|+||++|+++|.|+
T Consensus 156 QRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek--~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 156 QRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEK--QGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHH--hCceEEEEechhhHhhhhcccEEEEecCceeecCC
Confidence 9999999999999999999999999999999999999999764 69999999999999997 99999999999999999
Q ss_pred hHHHhhcC--HHHHHHHHHH
Q 017091 355 HAELLHKG--RLYAKLVKRQ 372 (377)
Q Consensus 355 ~~~l~~~~--~~~~~~~~~~ 372 (377)
+.+++... ..-++++.+.
T Consensus 234 t~~v~a~P~~~~TkRlieSh 253 (267)
T COG4167 234 TADVLASPLHELTKRLIESH 253 (267)
T ss_pred hhhhhcCCccHHHHHHHHHH
Confidence 99998763 3445555543
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=345.75 Aligned_cols=202 Identities=21% Similarity=0.313 Sum_probs=161.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + ..|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEE
Confidence 5999999999974 3699999999999999999999999999999999999999999999854 2 159
Q ss_pred EEEccCCc-Cc-cccHHHHHhcCCCC-CCC--HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 211 GFVGQEPQ-LL-QMDIKSNIMYGCPK-DVK--NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 211 ~~v~Q~~~-l~-~~tv~eni~~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
||+||++. ++ ..|+.||+.++... ... .......++..++.+. .......+|||||||||+|||||+
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~LSgGe~qrv~la~al~ 459 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS--------DQQKKVGQLSGGERNRVHLAKTLK 459 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh--------HhcCchhhCCHHHHHHHHHHHHHh
Confidence 99999973 55 57999999875321 111 1112223333332110 111123679999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC-CEEE-EEcChHHHhh
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-GRII-EVGNHAELLH 360 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~-G~i~-~~g~~~~l~~ 360 (377)
.+|++|||||||++||+.+.+.+.+.|.++ .+ |||+||||++.+.. ||+|++|++ |+++ ..|+.+++.+
T Consensus 460 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 460 SGGNVLLLDEPTNDLDVETLRALEEALLEF-----AG-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-----CC-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999999999999999999999987 23 89999999999876 999999996 5876 4577766544
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=347.08 Aligned_cols=199 Identities=21% Similarity=0.333 Sum_probs=162.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||++.|++ +++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999974 36999999999999999999999999999999999999999999999741 259
Q ss_pred EEEccCC--cCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 211 GFVGQEP--QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 211 ~~v~Q~~--~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
||++|++ .+. ..|+.+++... ........+...+..+++. +..++. ...|||||||||+|||+|+.
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~~---------~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARL-APQELEQKLRDYLGGFGFQGDKVTEE---------TRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHh-CchhhHHHHHHHHHHcCCChhHhcCc---------hhhCCHHHHHHHHHHHHHhc
Confidence 9999975 233 45788876421 1112233344444444442 122222 26799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEE-EEcChHHHh
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELL 359 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~-~~g~~~~l~ 359 (377)
+|++|||||||++||+.+...+.+.|.++ .| |||+||||++++.. ||+|++|++|+++ ..|++++..
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-----~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF-----EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999999999999999886 24 99999999999975 9999999999997 778888764
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=345.59 Aligned_cols=200 Identities=22% Similarity=0.417 Sum_probs=160.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ +++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 5999999999974 36999999999999999999999999999999999999999999998 4322 59
Q ss_pred EEEccCC-cCc-cccHHHHHhcCCCCC-CC--HHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEP-QLL-QMDIKSNIMYGCPKD-VK--NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~-~l~-~~tv~eni~~~~~~~-~~--~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
||++|++ .++ ..||.||+.++.... .. ..++...+...++. +..++ ....|||||||||+|||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~~LSgGekqRl~la~al 455 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMT---------PVKALSGGERNRLLLARLF 455 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhC---------hhhhCCHHHHHHHHHHHHH
Confidence 9999986 355 579999998753211 01 22223333333331 11121 2257999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe-CCEEEE-EcChHHHh
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID-DGRIIE-VGNHAELL 359 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~-~G~i~~-~g~~~~l~ 359 (377)
+.+|++|||||||++||+.+...+.+.++++ +.|||+||||.+++.. ||++++|+ +|++.. .|+.++.+
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~------~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY------QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC------CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 9999999999999999999999999988876 3499999999999975 99999998 899976 46666653
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=293.70 Aligned_cols=156 Identities=29% Similarity=0.370 Sum_probs=136.4
Q ss_pred EEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 017091 135 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 214 (377)
Q Consensus 135 ~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 214 (377)
.||+++|++. .++++ +|++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ++|++
T Consensus 4 ~~l~~~~~~~---~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~ 67 (177)
T cd03222 4 PDCVKRYGVF---FLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKP 67 (177)
T ss_pred CCeEEEECCE---EEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEc
Confidence 5899999753 58888 49999999999999999999999999999999999999999853 78888
Q ss_pred cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEe
Q 017091 215 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 294 (377)
Q Consensus 215 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlD 294 (377)
|++. ||||||||++||||++.+|+++|||
T Consensus 68 q~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllLD 96 (177)
T cd03222 68 QYID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFD 96 (177)
T ss_pred ccCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 8542 7999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEE--cChHHHh
Q 017091 295 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV--GNHAELL 359 (377)
Q Consensus 295 EPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~--g~~~~l~ 359 (377)
|||++||+.+++.+.+.+.+++++ .+.|+|++||+++.+.. ||++++|+++-.+.. |.|....
T Consensus 97 EPts~LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 97 EPSAYLDIEQRLNAARAIRRLSEE--GKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 999999999999999999988642 24899999999999975 999999998765533 5554333
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=371.47 Aligned_cols=212 Identities=24% Similarity=0.445 Sum_probs=172.3
Q ss_pred cEEEEEEEEEcCCC-CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC---CCCCeEEECCEeCCCCCHHHH
Q 017091 131 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWL 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~---p~~G~I~i~g~~i~~~~~~~~ 206 (377)
.++++||+++|+.+ ..+++|+|||+++++||++||+||||||||||+++|+|+.+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 47999999999622 13579999999999999999999999999999999999997 78999999999874 246
Q ss_pred hcceEEEccCCcCc-cccHHHHHhcCC----CCCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHH
Q 017091 207 REKIGFVGQEPQLL-QMDIKSNIMYGC----PKDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQK 275 (377)
Q Consensus 207 r~~i~~v~Q~~~l~-~~tv~eni~~~~----~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~ 275 (377)
|+.+|||+|++.++ ..||+||+.++. +...+++ .+.++++..++.+. .++.++ +..||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESY-------ADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh-------CCCeeCCCCCCCCHHHh
Confidence 78899999987655 789999998742 1112222 22333444443332 233333 236999999
Q ss_pred HHHHHHHHHcCCCC-EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH--HhcCeEEEEeCC-EEEE
Q 017091 276 QRIAIARAILRDPA-ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI--KAVDRIVVIDDG-RIIE 351 (377)
Q Consensus 276 QRv~iAral~~~p~-illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~--~~~d~v~~l~~G-~i~~ 351 (377)
||++|||||+.+|+ ||+|||||||||+.++..+++.|+++++ +|+|||+++|+++.. ..+|++++|++| ++++
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~---~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~ 984 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD---HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVY 984 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEE
Confidence 99999999999997 9999999999999999999999999864 489999999999963 469999999997 9999
Q ss_pred EcChH
Q 017091 352 VGNHA 356 (377)
Q Consensus 352 ~g~~~ 356 (377)
.|++.
T Consensus 985 ~G~~~ 989 (1394)
T TIGR00956 985 FGDLG 989 (1394)
T ss_pred ECCcc
Confidence 99874
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=319.55 Aligned_cols=323 Identities=21% Similarity=0.252 Sum_probs=252.5
Q ss_pred hhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHH
Q 017091 3 RTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWL 82 (377)
Q Consensus 3 ~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~ 82 (377)
+.|..|+.|+.+.++.+...........+...+...+..+......++.++-+.+++.....|.++.|.++.....++.+
T Consensus 256 E~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v 335 (604)
T COG4178 256 EAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQV 335 (604)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHH
Confidence 57889999999988888777766554433333333333333333333445556677777889999999999888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCcccccc-ccc-ccccccEEEEEEEEEcCCCCCCCceeeee
Q 017091 83 IYATWRMVDNLSSLLQSIGATEKVFQLIDL------LPSNQFLSEG-VKL-QRLMGHVQFVNISFHYPSRPTVPILNHVC 154 (377)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~------~~~~~~~~~~-~~~-~~~~~~i~~~~v~~~y~~~~~~~vL~~is 154 (377)
...+..+...+..+..-.+.+.|+.++... +++....... ... ......|+++|++..-|++ ...|++.|
T Consensus 336 ~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ll~~l~ 413 (604)
T COG4178 336 HSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELN 413 (604)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--Ceeeccce
Confidence 999999999999999999999999887632 2111111000 000 1013469999999998865 37999999
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCC
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK 234 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~ 234 (377)
|+|++||.+-|.||||||||||+|+|+|+.|--+|+|.+-. -..+-|+||.|++..+|.+|-|+|+...
T Consensus 414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l~YP~~~ 482 (604)
T COG4178 414 FEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAA 482 (604)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHHHHhCCCCC
Confidence 99999999999999999999999999999999999886531 1358999999999999999999998654
Q ss_pred -CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHH
Q 017091 235 -DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 313 (377)
Q Consensus 235 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~ 313 (377)
+.+++++.+++.++++.++.+++... +.+ ...||+|||||+++||.++++|++++|||.||+||+.++..+.++++
T Consensus 483 ~~~~d~~l~~vL~~vgL~~L~~rl~~~-~~W--~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~ 559 (604)
T COG4178 483 PDFSDAELVAVLHKVGLGDLAERLDEE-DRW--DRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLK 559 (604)
T ss_pred CCCChHHHHHHHHHcCcHHHHHHHhcc-CcH--hhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHH
Confidence 37789999999999999999886522 111 24699999999999999999999999999999999999999999998
Q ss_pred HhhccCCCCeEEEEEecCchhHHhcCeEEEEe
Q 017091 314 ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID 345 (377)
Q Consensus 314 ~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~ 345 (377)
+- -.+.|||.|+|+.......++.+-+.
T Consensus 560 ~~----lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 560 EE----LPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred hh----CCCCEEEEeccchhhHHHHhhheeec
Confidence 64 25889999999988877766655553
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=284.09 Aligned_cols=155 Identities=45% Similarity=0.749 Sum_probs=143.4
Q ss_pred EEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 017091 134 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 213 (377)
Q Consensus 134 ~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 213 (377)
++|++|.|++. ++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.......+++.++|+
T Consensus 2 ~~~~~~~~~~~---~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCCe---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 68999999753 599999999999999999999999999999999999999999999999988766566677889999
Q ss_pred ccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEE
Q 017091 214 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLL 293 (377)
Q Consensus 214 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illl 293 (377)
|| |||||+||++||||++.+|+++||
T Consensus 79 ~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 79 PQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred ee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 899999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCE
Q 017091 294 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 348 (377)
Q Consensus 294 DEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~ 348 (377)
||||++||+.++..+.+.+.++.+ .++|+|++||+++.+.. ||++++|++|+
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRELAE---EGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999998864 26899999999999987 79999999874
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=345.44 Aligned_cols=200 Identities=27% Similarity=0.425 Sum_probs=159.2
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..|+++||++.|+++ .++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ +.+
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVR 573 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------cee
Confidence 369999999999643 3599999999999999999999999999999999999999999999865 236
Q ss_pred eEEEccCCcCccccHHHHHh--cC-CCCCCCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 210 IGFVGQEPQLLQMDIKSNIM--YG-CPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 210 i~~v~Q~~~l~~~tv~eni~--~~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
|||++|++. ...++.+|.. +. .......+++...++.+++.. ..... ...|||||||||+||||++
T Consensus 574 igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~---------~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 574 MAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP---------MYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCC---------ccccCHHHHHHHHHHHHHh
Confidence 999999863 2334444432 11 011223445555666665542 22222 2679999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEE-EEcChHHH
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAEL 358 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~-~~g~~~~l 358 (377)
.+|++|||||||++||+.+...+.+.+.++ .+ |||+||||++.+.. ||++++|++|+++ ..|++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-----~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-----QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999988887764 24 99999999999976 9999999999998 56776653
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=341.98 Aligned_cols=209 Identities=24% Similarity=0.352 Sum_probs=155.8
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++||+++|++. ++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~~---~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGVR---VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCCc---eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 7899999999753 69999999999999999999999999999999999999999999998842 378
Q ss_pred EEccCCcCccccHHHHHhcCCCC--C-----------CCHHHH---HHHH-------HHcCHHHHHHhCCCC-cccccCC
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPK--D-----------VKNEDI---EWAA-------KQAYVHEFILSLPCG-YETLVDD 267 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~--~-----------~~~~~~---~~~~-------~~~~l~~~~~~~~~~-~~~~~~~ 267 (377)
|++|++..+..++.+++.-.... . ...... .... ....+.+++..+... .......
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 147 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPV 147 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCch
Confidence 88876533334444443211000 0 000000 0000 011233445554332 1112223
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC
Q 017091 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 346 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~ 346 (377)
.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++ +.|||+||||.+++.. ||+|++|++
T Consensus 148 ~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~------~~tviivsHd~~~l~~~~d~i~~L~~ 221 (638)
T PRK10636 148 SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY------QGTLILISHDRDFLDPIVDKIIHIEQ 221 (638)
T ss_pred hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHhcCEEEEEeC
Confidence 679999999999999999999999999999999999999999888765 4599999999999976 999999999
Q ss_pred CEEEE-EcChHHHhh
Q 017091 347 GRIIE-VGNHAELLH 360 (377)
Q Consensus 347 G~i~~-~g~~~~l~~ 360 (377)
|++.. .|+.+....
T Consensus 222 G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 222 QSLFEYTGNYSSFEV 236 (638)
T ss_pred CEEEEecCCHHHHHH
Confidence 99974 677766553
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=286.23 Aligned_cols=217 Identities=29% Similarity=0.399 Sum_probs=179.6
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC--CCCCCCeEEECCEeCCCCCHHHH-
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL- 206 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--~~p~~G~I~i~g~~i~~~~~~~~- 206 (377)
..++++|++.+-.++ +.+|++|||+|++||+.+|.||||||||||.++|+|. |++++|+|.++|+|+..+++.++
T Consensus 2 ~~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERA 79 (251)
T COG0396 2 MMLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERA 79 (251)
T ss_pred ceeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHH
Confidence 468999999998653 3699999999999999999999999999999999998 58899999999999999988754
Q ss_pred hcceEEEccCCcCcc-ccHHHHHhcCCCC--C------CCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHHH
Q 017091 207 REKIGFVGQEPQLLQ-MDIKSNIMYGCPK--D------VKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 207 r~~i~~v~Q~~~l~~-~tv~eni~~~~~~--~------~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
|..|.+-+|.|.=++ .++.+.+..+... . ...+++.+.++..++++ ++++. ++ ..+|||||+
T Consensus 80 r~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~-------vN-~GFSGGEkK 151 (251)
T COG0396 80 RAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERY-------VN-EGFSGGEKK 151 (251)
T ss_pred hcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcc-------cC-CCcCcchHH
Confidence 567999999998775 4888887643211 0 11233444555555544 22221 11 359999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh--cCeEEEEeCCEEEEEcC
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~--~d~v~~l~~G~i~~~g~ 354 (377)
|..|+.+++.+|++.|||||-||||..+-+.+.+.+..++. .|.++++|||.-..+.+ .|+|.+|-+|+|+..|.
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~---~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~ 228 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE---EGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGD 228 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc---CCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999975 48999999999999886 49999999999999999
Q ss_pred hHHHhh
Q 017091 355 HAELLH 360 (377)
Q Consensus 355 ~~~l~~ 360 (377)
+ ++..
T Consensus 229 ~-el~~ 233 (251)
T COG0396 229 P-ELAE 233 (251)
T ss_pred H-HHHH
Confidence 9 6654
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=337.71 Aligned_cols=209 Identities=27% Similarity=0.418 Sum_probs=156.6
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
.+|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.. .
T Consensus 2 ~~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~ 67 (635)
T PRK11147 2 SLISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------I 67 (635)
T ss_pred cEEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------E
Confidence 35899999999975 369999999999999999999999999999999999999999999998731 2
Q ss_pred eEEEccCCcCc-cccHHHHHhcCC-----------------CCCCCHHHHHHH------H-------HHcCHHHHHHhCC
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGC-----------------PKDVKNEDIEWA------A-------KQAYVHEFILSLP 258 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~-----------------~~~~~~~~~~~~------~-------~~~~l~~~~~~~~ 258 (377)
+++++|.+... ..++.+++..+. ......+.+... . ....+.++++.+.
T Consensus 68 ~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 147 (635)
T PRK11147 68 VARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLG 147 (635)
T ss_pred EEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCC
Confidence 56677654321 244554432110 000000000000 0 0112344455543
Q ss_pred CCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-
Q 017091 259 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA- 337 (377)
Q Consensus 259 ~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~- 337 (377)
.. .......|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++ +.|||+||||..++..
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~------~~tvlivsHd~~~l~~~ 219 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF------QGSIIFISHDRSFIRNM 219 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC------CCEEEEEeCCHHHHHHh
Confidence 32 12223679999999999999999999999999999999999999999999876 2499999999999976
Q ss_pred cCeEEEEeCCEEEE-EcChHHHhh
Q 017091 338 VDRIVVIDDGRIIE-VGNHAELLH 360 (377)
Q Consensus 338 ~d~v~~l~~G~i~~-~g~~~~l~~ 360 (377)
||+|++|++|+++. .|++.+.+.
T Consensus 220 ~d~i~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 220 ATRIVDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred cCeEEEEECCEEEEecCCHHHHHH
Confidence 99999999999985 588776654
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=271.49 Aligned_cols=198 Identities=25% Similarity=0.434 Sum_probs=169.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC---CCeEEECCEeCCCCCHHHHh
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~~~~~r 207 (377)
++.++||+...+++ -.|.++||+|.+||++.|.||||||||||+.-+.|.+.++ +|++.+|+++++..+.. +
T Consensus 2 ~l~l~nvsl~l~g~---cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCCc---eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 47899999888754 5899999999999999999999999999999999999885 89999999999877654 5
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCCCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
+++|++|||+.+| ..+|.+|+.|..+... .+.....++++.++.++..+.| .+||||||-||++-|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP---------~tlSGGQrARvaL~R 147 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP---------ATLSGGQRARVALLR 147 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh---------hhcCcchHHHHHHHH
Confidence 7899999999999 6899999999765433 2333456788888888888777 679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 344 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l 344 (377)
+|+.+|+.++||||+|.||..-+.++.+....-.+ ..|..+|+||||...+....||+-|
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r--~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVR--AAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHH--hcCCCeEEEecccccCCCCCeeeee
Confidence 99999999999999999999999999887654322 3588999999999988855666655
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=351.98 Aligned_cols=213 Identities=25% Similarity=0.436 Sum_probs=171.8
Q ss_pred cEEEEEEEEEcCCC----------CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC--CCCeEEECCEeC
Q 017091 131 HVQFVNISFHYPSR----------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPL 198 (377)
Q Consensus 131 ~i~~~~v~~~y~~~----------~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i 198 (377)
.+.++||++..+.. ..+.+|+|||+++++|+++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 58999999987421 123699999999999999999999999999999999999763 789999999876
Q ss_pred CCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCC----CCCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccC---
Q 017091 199 TDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGC----PKDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVD--- 266 (377)
Q Consensus 199 ~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~----~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~--- 266 (377)
. ....++.+|||+|++.++ ..||+||+.+.. +...+.+ .+.+.++..++.+.. ++.++
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~-------~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLK-------DAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHh-------CCccCCCC
Confidence 4 234567799999998776 689999998742 1122222 233444555544433 23332
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh-H-HhcCeEEEE
Q 017091 267 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-I-KAVDRIVVI 344 (377)
Q Consensus 267 ~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~-~-~~~d~v~~l 344 (377)
...|||||||||+|||+|+.+|++|+|||||||||+.++..+++.|+++.+ .|+|||+++|+++. + ..||++++|
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~---~g~tVI~t~Hq~~~~i~~~~D~vllL 1093 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPSIDIFEAFDELLLM 1093 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCCCHHHHHhCCEEEEE
Confidence 247999999999999999999999999999999999999999999999864 48899999999984 4 559999999
Q ss_pred eC-CEEEEEcChH
Q 017091 345 DD-GRIIEVGNHA 356 (377)
Q Consensus 345 ~~-G~i~~~g~~~ 356 (377)
++ |+++..|++.
T Consensus 1094 ~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1094 KRGGQVIYSGPLG 1106 (1470)
T ss_pred cCCCEEEEECCcc
Confidence 96 8999999864
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=278.85 Aligned_cols=156 Identities=29% Similarity=0.431 Sum_probs=126.3
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
.++|+|+||++++|++++|+||||||||||+|++. +++|++.++|.. ... .++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 47999999999999999999999999999999985 379999998762 111 2345888877
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHcCC--CCEEEEeCcCCCCCHH
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRD--PAILLLDEATSALDSE 303 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~--p~illlDEPts~LD~~ 303 (377)
.+. ++.++.+.. ......+||||||||++||||++.+ |+++||||||++||+.
T Consensus 68 ---------------~~~---------l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~ 123 (176)
T cd03238 68 ---------------LQF---------LIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ 123 (176)
T ss_pred ---------------HHH---------HHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHH
Confidence 012 222222211 1112367999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEE
Q 017091 304 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 349 (377)
Q Consensus 304 ~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i 349 (377)
+.+.+.+.++++++ .|+|||++||+++.+..||++++|++|+.
T Consensus 124 ~~~~l~~~l~~~~~---~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 124 DINQLLEVIKGLID---LGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 99999999998853 48899999999999877999999976543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=292.80 Aligned_cols=203 Identities=25% Similarity=0.413 Sum_probs=156.2
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc-cCCcCc-cccH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG-QEPQLL-QMDI 224 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~l~-~~tv 224 (377)
.++++||||+|++|++++++|||||||||++|+|.|++.|++|.|.++|.+...- .++.-+++++|+ |...+. ..-+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~-~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRR-REEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchh-HHHHHHHHHHHhhhhheeeeechh
Confidence 3589999999999999999999999999999999999999999999999876542 334445687776 444443 3223
Q ss_pred HHHHhcC-CCCCCCHHHH----HHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCC
Q 017091 225 KSNIMYG-CPKDVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 299 (377)
Q Consensus 225 ~eni~~~-~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~ 299 (377)
.|-+..- .-.+..+.+. ....+..+++.++.. ..+.||-|||.|+.||.||+++|+||+|||||=|
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~---------~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW---------PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhh---------hhhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 3322110 0012222222 222222223322221 1257999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 300 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 300 LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||..++..+.+.+++..++ .+.||++.||+++.+.. ||||++|+.|+++.+|+.+++...
T Consensus 187 LDV~aq~~ir~Flke~n~~--~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 187 LDVNAQANIREFLKEYNEE--RQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred cchhHHHHHHHHHHHHHHh--hCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 9999999999999999764 68999999999999865 999999999999999999988654
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=317.47 Aligned_cols=211 Identities=32% Similarity=0.485 Sum_probs=164.3
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
|..|+++|++++|++ +++++|+||++.+|+++||||+||||||||||+|+|...|++|+|...+. .
T Consensus 1 m~~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~ 66 (530)
T COG0488 1 MSMITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------L 66 (530)
T ss_pred CceEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------c
Confidence 346999999999965 36999999999999999999999999999999999999999999987552 2
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCCC-CHHHHHHHH------------------H-------HcCHHHHHHhCCCCc
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPKDV-KNEDIEWAA------------------K-------QAYVHEFILSLPCGY 261 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~~-~~~~~~~~~------------------~-------~~~l~~~~~~~~~~~ 261 (377)
+|+|++|++.+. ..||.+.+..+...-. ...+...+. + ...+...+..++...
T Consensus 67 ~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~ 146 (530)
T COG0488 67 RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD 146 (530)
T ss_pred eEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCc
Confidence 599999999988 4699999876532100 000001100 0 022233344433222
Q ss_pred ccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCe
Q 017091 262 ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDR 340 (377)
Q Consensus 262 ~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~ 340 (377)
. .....+||||||.||+|||||+.+|++|||||||++||..+..-+.+.|.++ +| |+|+||||-+++.. |++
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-----~g-tviiVSHDR~FLd~V~t~ 219 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-----PG-TVIVVSHDRYFLDNVATH 219 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-----CC-cEEEEeCCHHHHHHHhhh
Confidence 1 1223679999999999999999999999999999999999999888888866 46 99999999999987 999
Q ss_pred EEEEeCCEEEEE-cChHHHhh
Q 017091 341 IVVIDDGRIIEV-GNHAELLH 360 (377)
Q Consensus 341 v~~l~~G~i~~~-g~~~~l~~ 360 (377)
|+.++.|++... |..+..++
T Consensus 220 I~~ld~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 220 ILELDRGKLTPYKGNYSSYLE 240 (530)
T ss_pred eEEecCCceeEecCCHHHHHH
Confidence 999999988654 66665544
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=331.13 Aligned_cols=192 Identities=23% Similarity=0.278 Sum_probs=153.4
Q ss_pred EEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEE-----------ECCEeCCCCCHH
Q 017091 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-----------IDGFPLTDLDIR 204 (377)
Q Consensus 136 ~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~-----------i~g~~i~~~~~~ 204 (377)
+++++|+.+ ..+|++++ .+++||++||+||||||||||+|+|+|+++|++|+|. ++|.++..+...
T Consensus 78 ~~~~~yg~~--~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGVN--GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecCC--ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 388999753 35999999 8999999999999999999999999999999999997 899887543211
Q ss_pred --HHhcceEEEcc----CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 017091 205 --WLREKIGFVGQ----EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278 (377)
Q Consensus 205 --~~r~~i~~v~Q----~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv 278 (377)
..+.++++.+| .|.+|.+|+.||+... + ..+.+.++++..++....++.+ .+||||||||+
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~-~~~~~~~~l~~l~l~~~~~~~~---------~~LSgGe~qrv 221 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---D-ERGKLDEVVERLGLENILDRDI---------SELSGGELQRV 221 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhh---h-HHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHH
Confidence 11223455554 5556667999998742 1 1234445555555544333322 57999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCC
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 347 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G 347 (377)
+|||||+++|++|||||||++||+.++..+.+.|+++. + |+|||+||||++.+.. ||+|++|+++
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~---~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA---E-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999985 3 7899999999999976 9999999873
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=270.66 Aligned_cols=228 Identities=25% Similarity=0.415 Sum_probs=174.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCE-----eCCCCCHHH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF-----PLTDLDIRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~-----~i~~~~~~~ 205 (377)
-+++.++++.|+.. ...+||||++.|||..+|||+||||||||+++|++-+.|++|+|.+.-. ++-.++..+
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 48999999999864 4789999999999999999999999999999999999999999998652 232333333
Q ss_pred ----HhcceEEEccCCc--Cc-c----ccHHHHHh-cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccc-CCCCCCh
Q 017091 206 ----LREKIGFVGQEPQ--LL-Q----MDIKSNIM-YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV-DDDLLSG 272 (377)
Q Consensus 206 ----~r~~i~~v~Q~~~--l~-~----~tv~eni~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~LSg 272 (377)
+|..-|||.|+|. |- . +.|-|-+. .|.. + ...+.. ...+|+++.....+..- -+..+||
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R-H--YG~iR~-----~a~~WL~~VEI~~~RiDD~PrtFSG 154 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR-H--YGNIRA-----EAQDWLEEVEIDLDRIDDLPRTFSG 154 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhh-h--hhhHHH-----HHHHHHHhcccCcccccCcccccch
Confidence 3456899999994 21 2 23333322 2211 1 111111 12344444332222111 1367999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEE
Q 017091 273 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 351 (377)
Q Consensus 273 Gq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~ 351 (377)
|++||+.|||-|+..|+++++||||.|||..-+.+++++++.+..+ -+.++++||||+..++. +||.++|++|++++
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~--l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE--LGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHh--cCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 9999999999999999999999999999999999999999998764 48899999999999986 99999999999999
Q ss_pred EcChHHHhhc-CHHHHHHHHH
Q 017091 352 VGNHAELLHK-GRLYAKLVKR 371 (377)
Q Consensus 352 ~g~~~~l~~~-~~~~~~~~~~ 371 (377)
.|-.+.++.+ ...|.+++-+
T Consensus 233 ~GLTDrvLDDP~hPYTQLLVS 253 (258)
T COG4107 233 SGLTDRVLDDPHHPYTQLLVS 253 (258)
T ss_pred cccccccccCCCCchHHHHHH
Confidence 9999988876 4558776643
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-37 Score=289.15 Aligned_cols=273 Identities=26% Similarity=0.301 Sum_probs=212.6
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCC
Q 017091 65 GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSR 144 (377)
Q Consensus 65 g~lt~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~ 144 (377)
+.-+......+.+....+-.|+.++...+..+..+.+|..++.++-..|+....+... ..| .-..|+++||.|.|...
T Consensus 258 ~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~~q-~~p-~~~~lelrnvrfay~~~ 335 (546)
T COG4615 258 GWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQ-AFP-DWKTLELRNVRFAYQDN 335 (546)
T ss_pred ccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCCCC-cCC-cccceeeeeeeeccCcc
Confidence 3334444444555566677899999999999999999999998876544332222111 111 13369999999999864
Q ss_pred CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccH
Q 017091 145 PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI 224 (377)
Q Consensus 145 ~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv 224 (377)
. --+..||++|++||++.|+|.|||||||++++|.|+++|++|+|++||.+++.-+++++|+-++-||-|.++|+.++
T Consensus 336 ~--FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll 413 (546)
T COG4615 336 A--FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL 413 (546)
T ss_pred c--ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh
Confidence 2 46899999999999999999999999999999999999999999999999999899999999999999999996543
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHH
Q 017091 225 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304 (377)
Q Consensus 225 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~ 304 (377)
+.....+.+.+...+++..+.....- .++ ......||.|||+|+++--|++-+.||+++||=.+.-||.-
T Consensus 414 ------~~e~~as~q~i~~~LqrLel~~ktsl-~d~---~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaF 483 (546)
T COG4615 414 ------GPEGKASPQLIEKWLQRLELAHKTSL-NDG---RFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAF 483 (546)
T ss_pred ------CCccCCChHHHHHHHHHHHHhhhhcc-cCC---cccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHH
Confidence 21222445556666655444332211 111 11113599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEc
Q 017091 305 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 305 ~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g 353 (377)
++.+.+.+.-+.++ .|+||+.||||-.....|||++.|++|++++..
T Consensus 484 RR~FY~~lLp~LK~--qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 484 RREFYQVLLPLLKE--QGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHHHhHHHHH--hCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 99998876554443 699999999999999999999999999999864
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=280.82 Aligned_cols=191 Identities=27% Similarity=0.441 Sum_probs=158.7
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
.++|+||||++++||.+||+|+||||||||+|+|+|.++|++|+|.++|+--.-+. -..||-| +.|.+|
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~-----lg~Gf~p------elTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIE-----LGAGFDP------ELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhh-----cccCCCc------ccchHH
Confidence 57999999999999999999999999999999999999999999999996321111 1233322 479999
Q ss_pred HHhc-----CCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCC
Q 017091 227 NIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 301 (377)
Q Consensus 227 ni~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD 301 (377)
||.+ |......++...+..+-+.+.+|++. |. .++|.||+-|+++|-|...+|+|||+||..+.-|
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-Pv--------ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD 179 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-PV--------KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGD 179 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-ch--------hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCC
Confidence 9864 33222334445556666777777764 32 5689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 302 ~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
+.-+++-.+.+.++.+ +++|+|+||||++.++. |||+++|++|+++..|+++++.+
T Consensus 180 ~~F~~K~~~rl~e~~~---~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 180 AAFQEKCLERLNELVE---KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HHHHHHHHHHHHHHHH---cCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 9999999999988854 46899999999999976 99999999999999999999975
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=350.12 Aligned_cols=205 Identities=21% Similarity=0.278 Sum_probs=163.1
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC----CCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-c
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY----EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-Q 221 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~----~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~ 221 (377)
+++|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.+||+++.+.. ...|+.++|++|++.++ .
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 46999999999999999999999999999999999986 579999999999875432 33566799999998777 5
Q ss_pred ccHHHHHhcCCC----C----CCCHHHHHHHHHHcCHHHHHHhCCC--CcccccC---CCCCChHHHHHHHHHHHHcCCC
Q 017091 222 MDIKSNIMYGCP----K----DVKNEDIEWAAKQAYVHEFILSLPC--GYETLVD---DDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 222 ~tv~eni~~~~~----~----~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~---~~~LSgGq~QRv~iAral~~~p 288 (377)
.||+||+.++.. . ....++..+. ..++.++.+.. -.++.++ ...|||||||||+|||||+.+|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p 228 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKH----IADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGA 228 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH----HHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCC
Confidence 899999987421 0 1122211110 01122333222 2344443 2579999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCc-hhHH-hcCeEEEEeCCEEEEEcChHHH
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-STIK-AVDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l-~~~~-~~d~v~~l~~G~i~~~g~~~~l 358 (377)
++++|||||+|||+.++..+.+.|+++.++ .|+|+|+++|++ +.+. .+|+|++|++|+++..|+++++
T Consensus 229 ~vlllDEPTsgLD~~~~~~i~~~L~~la~~--~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 229 KIQCWDNATRGLDSATALEFIRALKTSANI--LDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHHHh--cCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 999999999999999999999999998653 488999999997 4554 4999999999999999999877
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=326.80 Aligned_cols=221 Identities=23% Similarity=0.306 Sum_probs=159.6
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC---CCCCCeEEECCEeCCCC--CH-
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY---EPSDGQIYIDGFPLTDL--DI- 203 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~---~p~~G~I~i~g~~i~~~--~~- 203 (377)
..|+++|++|+|++. ++|+|+||+|++|+++|||||||||||||+|+|+|.. .|++|+|.+.++++... +.
T Consensus 176 ~~I~i~nls~~y~~~---~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVGGR---DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeCCC---EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 369999999999753 5999999999999999999999999999999999864 58999998766543211 11
Q ss_pred -----------HHHhcceEEEccCCcCccccHHHHHhcCCCCCCCH----HHHHHHHHHc----------CHHHHHHhCC
Q 017091 204 -----------RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN----EDIEWAAKQA----------YVHEFILSLP 258 (377)
Q Consensus 204 -----------~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~----~~~~~~~~~~----------~l~~~~~~~~ 258 (377)
..++..+++++|++.+...+..+|........... +++.++.+.. .+...+..+.
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lg 332 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLS 332 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCC
Confidence 11244588999987654333333332211101111 1222222222 1223333333
Q ss_pred CCcc-cccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh
Q 017091 259 CGYE-TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 337 (377)
Q Consensus 259 ~~~~-~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~ 337 (377)
.... ......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+||||++.+..
T Consensus 333 l~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~------~~tviivsHd~~~l~~ 406 (718)
T PLN03073 333 FTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW------PKTFIVVSHAREFLNT 406 (718)
T ss_pred CChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc------CCEEEEEECCHHHHHH
Confidence 2100 11123679999999999999999999999999999999999999999999876 5699999999999976
Q ss_pred -cCeEEEEeCCEEE-EEcChHHHh
Q 017091 338 -VDRIVVIDDGRII-EVGNHAELL 359 (377)
Q Consensus 338 -~d~v~~l~~G~i~-~~g~~~~l~ 359 (377)
||+|++|++|++. ..|+.++..
T Consensus 407 ~~d~i~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 407 VVTDILHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred hCCEEEEEECCEEEEeCCCHHHHH
Confidence 9999999999996 567766554
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=343.97 Aligned_cols=208 Identities=23% Similarity=0.392 Sum_probs=165.6
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC---CCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cc
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QM 222 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ 222 (377)
+++|+|+|+.|+|||+++|+||||||||||||+|+|.++|+ +|+|.+||.++.+.. .++.++||+|++.++ .+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 46999999999999999999999999999999999999998 999999999886543 256799999998777 68
Q ss_pred cHHHHHhcCCC-C----------CCCHHH----------HHHHHHH---------cCHHHHHHhCCCC--cccccCC---
Q 017091 223 DIKSNIMYGCP-K----------DVKNED----------IEWAAKQ---------AYVHEFILSLPCG--YETLVDD--- 267 (377)
Q Consensus 223 tv~eni~~~~~-~----------~~~~~~----------~~~~~~~---------~~l~~~~~~~~~~--~~~~~~~--- 267 (377)
||+||+.|+.. . ....++ +....+. ...+..++.+... .+|.++.
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999987421 0 000110 0000000 0123455554432 3455542
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch-hH-HhcCeEEEEe
Q 017091 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TI-KAVDRIVVID 345 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~-~~-~~~d~v~~l~ 345 (377)
..|||||||||+||++|+.+|+++++||||+|||+.+..++.+.|+++.+. .|+|+|+++|++. .+ ..+|+|++|+
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~--~g~Tviis~Hqp~~~i~~lfD~vilL~ 412 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHL--TEATVLMSLLQPAPETFDLFDDIILLS 412 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHh--cCCEEEEEecCCCHHHHHHhheEEEee
Confidence 579999999999999999999999999999999999999999999998643 4789999999974 55 4599999999
Q ss_pred CCEEEEEcChHHHh
Q 017091 346 DGRIIEVGNHAELL 359 (377)
Q Consensus 346 ~G~i~~~g~~~~l~ 359 (377)
+|+++..|+++++.
T Consensus 413 ~G~ivy~G~~~~~~ 426 (1470)
T PLN03140 413 EGQIVYQGPRDHIL 426 (1470)
T ss_pred CceEEEeCCHHHHH
Confidence 99999999988875
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=315.71 Aligned_cols=218 Identities=35% Similarity=0.559 Sum_probs=178.8
Q ss_pred cEEEEEEEEEcCCCC--CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC---CCCeEEECCEeCCCCCHHH
Q 017091 131 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SDGQIYIDGFPLTDLDIRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~--~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p---~~G~I~i~g~~i~~~~~~~ 205 (377)
.+.++|++..-++.. .+++|+|||.+++|||+.||.||||||||||+++|+|..++ .+|+|++||++. +.+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~---~~~~ 101 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR---DSRS 101 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC---chhh
Confidence 488999998886542 46899999999999999999999999999999999999974 799999999654 3466
Q ss_pred HhcceEEEccCCcCc-cccHHHHHhcCC----CCCCCHHHHHHHHHHcCHHHHHHhCCCC--cccccCC---CCCChHHH
Q 017091 206 LREKIGFVGQEPQLL-QMDIKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILSLPCG--YETLVDD---DLLSGGQK 275 (377)
Q Consensus 206 ~r~~i~~v~Q~~~l~-~~tv~eni~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~---~~LSgGq~ 275 (377)
+++.+|||.|+..++ ..||+|++.|.. +...+.++ +...+++.+..++.. -++.++. ..+|||||
T Consensus 102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~-----k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGEr 176 (613)
T KOG0061|consen 102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEE-----KRERVEEVISELGLEKCADTLIGNPGIRGLSGGER 176 (613)
T ss_pred hhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHHcCChhhccceecCCCCCccccchh
Confidence 788899999999988 689999997642 22112222 122334445554433 3444442 46999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh-H-HhcCeEEEEeCCEEEEEc
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-I-KAVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~-~-~~~d~v~~l~~G~i~~~g 353 (377)
+||+||.-|+.||+||+|||||||||..+..++.+.|+++.+ .|+|||++-|.++. + ...|++++|.+|+++..|
T Consensus 177 kRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~---~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 177 KRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLAR---SGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred hHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHh---CCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 999999999999999999999999999999999999999975 49999999999974 3 569999999999999999
Q ss_pred ChHHHh
Q 017091 354 NHAELL 359 (377)
Q Consensus 354 ~~~~l~ 359 (377)
+++++.
T Consensus 254 ~~~~~~ 259 (613)
T KOG0061|consen 254 SPRELL 259 (613)
T ss_pred CHHHHH
Confidence 998764
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=263.64 Aligned_cols=189 Identities=24% Similarity=0.404 Sum_probs=159.0
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
++.+|++..-++ ..++.++||++.+||.+-|.||||||||||||+|+|+.+|++|+|.|+|.++.... +..++.+-
T Consensus 3 L~a~~L~~~R~e---~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCERGE---RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALL 78 (209)
T ss_pred chhhhhhhccCc---ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHH
Confidence 677888876654 47999999999999999999999999999999999999999999999999887653 33567789
Q ss_pred EEccCCcCc-cccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
|+...+-+= .+|++||+.|... .....+.+++++..+++..+. ++|. .+||-|||+||+|||-++..+
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~-dlp~--------~~LSAGQqRRvAlArL~ls~~ 149 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLE-DLPV--------GQLSAGQQRRVALARLWLSPA 149 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccccc-ccch--------hhcchhHHHHHHHHHHHcCCC
Confidence 999888775 7899999987422 113467788899998887643 3454 569999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 336 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~ 336 (377)
+++||||||++||+.....+...+..... +|-.||.+||..-.+.
T Consensus 150 pLWiLDEP~taLDk~g~a~l~~l~~~H~~---~GGiVllttHq~l~~~ 194 (209)
T COG4133 150 PLWILDEPFTALDKEGVALLTALMAAHAA---QGGIVLLTTHQPLPIA 194 (209)
T ss_pred CceeecCcccccCHHHHHHHHHHHHHHhc---CCCEEEEecCCccCCC
Confidence 99999999999999999999988887653 4678999999876553
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=288.93 Aligned_cols=202 Identities=28% Similarity=0.431 Sum_probs=165.3
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..++++|++++|++. +.+++++||.|.+|+.+||+||||+|||||+|+|+|...|.+|+|.+.-. -+
T Consensus 320 ~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~ 386 (530)
T COG0488 320 LVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VK 386 (530)
T ss_pred eeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eE
Confidence 359999999999753 47999999999999999999999999999999999999999999987431 25
Q ss_pred eEEEccCC-cCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 210 IGFVGQEP-QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 210 i~~v~Q~~-~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
+||.+|+. .++ ..|+.|++.-..+ ...+..+...+..+++..--...| ...||||||-|+.+|+.++.+
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~-~~~e~~~r~~L~~f~F~~~~~~~~--------v~~LSGGEk~Rl~La~ll~~~ 457 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFP-DGDEQEVRAYLGRFGFTGEDQEKP--------VGVLSGGEKARLLLAKLLLQP 457 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCc-cccHHHHHHHHHHcCCChHHHhCc--------hhhcCHhHHHHHHHHHHhccC
Confidence 99999988 344 4689999976532 222455666666655533222222 256999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEE-cChHHHhh
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV-GNHAELLH 360 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~-g~~~~l~~ 360 (377)
|.+|||||||+.||..+...+.+.|.++ .| |||+||||-.++.. |++++.+++ ++... |+.++..+
T Consensus 458 pNvLiLDEPTNhLDi~s~~aLe~aL~~f-----~G-tvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 458 PNLLLLDEPTNHLDIESLEALEEALLDF-----EG-TVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHhC-----CC-eEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 9999999999999999999999999987 24 99999999999987 999999998 66655 66665543
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=316.79 Aligned_cols=217 Identities=21% Similarity=0.403 Sum_probs=182.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC-HHHHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-~~~~r~~ 209 (377)
.+.++|+++.|+... .+++++||.|++||+.|+.|+|||||||++|+|.|..+|++|++.++|.++.... ..+.++.
T Consensus 564 ~~~~~~L~k~y~~~~--~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGKD--GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred eEEEcceeeeecchh--hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 588999999998652 2999999999999999999999999999999999999999999999999987533 3347889
Q ss_pred eEEEccCCcCc-cccHHHHHhcCC-CCCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGC-PKDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~-~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
+||+||+..++ .+|.+|.+.+-. -..... +.+.+.++..++.+..+. ....+|||+|+|+++|-|
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~---------~~~~ySgG~kRkLs~aia 712 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK---------QVRTYSGGNKRRLSFAIA 712 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc---------chhhCCCcchhhHHHHHH
Confidence 99999999888 689999996521 111122 223444444444443332 236799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
++.+|++++|||||+|+||.+++.+++++.++++ .|+.+|++||.+++.+. |||+.+|.+|++...|+++++-++
T Consensus 713 lig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k---~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 713 LIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK---NGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 9999999999999999999999999999999975 35699999999999987 999999999999999999998643
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=273.15 Aligned_cols=328 Identities=21% Similarity=0.266 Sum_probs=235.2
Q ss_pred hhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCcCHHHHHHHH--
Q 017091 3 RTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMI----GQVSPEQLTKYV-- 76 (377)
Q Consensus 3 ~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~----g~lt~g~l~~~~-- 76 (377)
+.|..|++++.+..+..+..+++.......-.+..++..+.+++-.+..++..++.+..+.. +.+++..+...+
T Consensus 276 E~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~ 355 (659)
T KOG0060|consen 276 EEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISN 355 (659)
T ss_pred hhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhh
Confidence 57788999988888777777665554332222211222222332223333322222222222 456777765443
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-------------ccc-------ccc-cccccccccEE
Q 017091 77 --LYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSN-------------QFL-------SEG-VKLQRLMGHVQ 133 (377)
Q Consensus 77 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~-------------~~~-------~~~-~~~~~~~~~i~ 133 (377)
.++..++..+..+......+....+-..|+.++.+.-.+. ..+ ..+ ....+....|+
T Consensus 356 na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~ 435 (659)
T KOG0060|consen 356 NAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIE 435 (659)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEE
Confidence 2334455666666666666666677778887776432110 000 000 00111123699
Q ss_pred EEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 017091 134 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 213 (377)
Q Consensus 134 ~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 213 (377)
+++|+++-|.+ +..+++|+||+|+.|+.+.|.||||||||+|+|.+.|+.+..+|.+.--...- -+.+-|+
T Consensus 436 ~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~--------~~~lffl 506 (659)
T KOG0060|consen 436 FEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG--------PKDLFFL 506 (659)
T ss_pred eeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC--------CCceEEe
Confidence 99999998874 34688999999999999999999999999999999999999999997533211 1459999
Q ss_pred ccCCcCccccHHHHHhcCCC------CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC---CCCCChHHHHHHHHHHHH
Q 017091 214 GQEPQLLQMDIKSNIMYGCP------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD---DDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 214 ~Q~~~l~~~tv~eni~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~LSgGq~QRv~iAral 284 (377)
||.|++-.+|.||.+.|+.. ...+++++.+.++.+++...+++.. |+++.+. ...||+||+||++.||-+
T Consensus 507 PQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~g-gld~~~~~dW~dvLS~GEqQRLa~ARLf 585 (659)
T KOG0060|consen 507 PQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREG-GLDQQVDWDWMDVLSPGEQQRLAFARLF 585 (659)
T ss_pred cCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhC-CCCchhhccHHhhcCHHHHHHHHHHHHH
Confidence 99999888999999998632 2356788999999999998888765 7875554 257999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeC
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~ 346 (377)
+++|++-+|||.||++|.+.+..+.+.+++. |.|.|-|+|+.+..+.-|.++-|+.
T Consensus 586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~------giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 586 YHKPKFAILDECTSAVTEDVEGALYRKCREM------GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred hcCCceEEeechhhhccHHHHHHHHHHHHHc------CCeEEEeccHHHHHhhhhEEEEecC
Confidence 9999999999999999999999999888865 8999999999999998999999975
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=250.99 Aligned_cols=205 Identities=29% Similarity=0.440 Sum_probs=154.5
Q ss_pred cEEEEEEEEEcC----CCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCE----eCCCCC
Q 017091 131 HVQFVNISFHYP----SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF----PLTDLD 202 (377)
Q Consensus 131 ~i~~~~v~~~y~----~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~----~i~~~~ 202 (377)
.+.++||+|+|. ++-.-++++|+||+++.||++++-||||||||||+|+|.|-|.|++|+|++.-. |+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 378999999883 111247999999999999999999999999999999999999999999998543 232333
Q ss_pred HH---H-HhcceEEEccCCcCc-cccHHHHHh-----cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh
Q 017091 203 IR---W-LREKIGFVGQEPQLL-QMDIKSNIM-----YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG 272 (377)
Q Consensus 203 ~~---~-~r~~i~~v~Q~~~l~-~~tv~eni~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSg 272 (377)
+. + .|+.||||+|.-... ..+..|.++ .|.+.+....+....+.+.++.+-+..++ +.++||
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La--------PaTFSG 155 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA--------PATFSG 155 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC--------CcccCC
Confidence 32 2 355699999965433 334344332 33322211222333344444444444443 367999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC
Q 017091 273 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 346 (377)
Q Consensus 273 Gq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~ 346 (377)
||||||.|||.++.+-+||||||||++||..+++-+.++|.+.+. +|..+|=|-||-+.-+. |||++-|..
T Consensus 156 GEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka---~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 156 GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA---RGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred chheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHh---cCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999998764 58999999999777665 999988753
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=265.79 Aligned_cols=192 Identities=26% Similarity=0.341 Sum_probs=125.8
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHH-HHHhhCCCCCCCeEEECC-------EeCC---CCCHHHHh-cceEEEc
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFV-NLLLRLYEPSDGQIYIDG-------FPLT---DLDIRWLR-EKIGFVG 214 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl-~~l~gl~~p~~G~I~i~g-------~~i~---~~~~~~~r-~~i~~v~ 214 (377)
.++|+|+||+|++||+++|+||||||||||+ ..+. .+|++.+.. ..+. .......+ ...++..
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 4699999999999999999999999999996 4442 234432210 0000 00001111 1244445
Q ss_pred cCCcC-c--cccHH---HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHcCC
Q 017091 215 QEPQL-L--QMDIK---SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 215 Q~~~l-~--~~tv~---eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
|++.. . ..++. +...+.... ...+... +. .+.++.+..... ......+||||||||++|||||+.+
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~---~~---~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~ 155 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLL-FARVGIR---ER---LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSG 155 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHH-hhhhhHH---HH---HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhC
Confidence 54421 1 12322 221110000 0000000 00 123444333221 1223468999999999999999999
Q ss_pred C--CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE------eCCEEEEEc
Q 017091 288 P--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVG 353 (377)
Q Consensus 288 p--~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l------~~G~i~~~g 353 (377)
| ++|||||||++||+.+...+.+.|+++++ .|.|+|+||||++.+..||++++| ++|+|+++|
T Consensus 156 p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~---~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 156 LTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD---LGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh---CCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 8 59999999999999999999999998853 478999999999988779999999 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=245.98 Aligned_cols=134 Identities=44% Similarity=0.719 Sum_probs=113.7
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHH
Q 017091 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNI 228 (377)
Q Consensus 150 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni 228 (377)
|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+....++.++|++|++.++ ..|++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 78999999999999999999999999999999999999999999999998877778889999999998888 4679999
Q ss_pred hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCCEEEEeCcCC
Q 017091 229 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATS 298 (377)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~illlDEPts 298 (377)
..++++.+.++..++.++.+ ..++ ...||||||||++|||||+++|+++||||||+
T Consensus 80 -------~~~~~~~~~l~~l~~~~~~~-------~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -------ESDERIEEVLKKLGLEDLLD-------RKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -------HHHHHHHHHHHHTTHGGGTG-------SBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -------cccccccccccccccccccc-------cccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 12344556666665544222 2221 25799999999999999999999999999997
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=255.02 Aligned_cols=164 Identities=24% Similarity=0.328 Sum_probs=128.1
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCC---------CeEEECCEeCCCCCHHHHhcceEEEccCCcCcc
Q 017091 151 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---------GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 221 (377)
Q Consensus 151 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~---------G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 221 (377)
+++++++++| +++|+||||||||||+++|+|+.+|.. |++.++|++.... ..+++|+|+||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 6789999999 999999999999999999999987653 4677788765431 2356799999999776
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCcC
Q 017091 222 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEAT 297 (377)
Q Consensus 222 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~----~~p~illlDEPt 297 (377)
++.. ..+++.++++. + ++ .......||||||||++|||+++ .+|+++||||||
T Consensus 89 --------~~~~---~~~~~~~~l~~----------~-~~-~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 89 --------YSII---SQGDVSEIIEA----------P-GK-KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred --------eeEE---ehhhHHHHHhC----------C-Cc-cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 2211 12233333332 1 11 11123579999999999999996 567999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeC
Q 017091 298 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346 (377)
Q Consensus 298 s~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~ 346 (377)
++||+.+...+.+.|+++. ++.|||+|||+++.+..||+++.+..
T Consensus 146 ~~LD~~~~~~l~~~l~~~~----~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 146 AALDDANVERFARLLKEFS----KETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred ccCCHHHHHHHHHHHHHhc----cCCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999999999884 35799999999998878999999864
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=261.42 Aligned_cols=195 Identities=27% Similarity=0.401 Sum_probs=138.5
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh-----h-CC----CCCCC-----------eEEECCEeCCCCC---H
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-----R-LY----EPSDG-----------QIYIDGFPLTDLD---I 203 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~-----g-l~----~p~~G-----------~I~i~g~~i~~~~---~ 203 (377)
..|+|||++|+.|.+++|+|+||||||||++.+. . +. .|..+ -|.+|..++..-+ +
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4799999999999999999999999999998662 1 11 12222 3566666654321 1
Q ss_pred -------HHHhc----------------ceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCC
Q 017091 204 -------RWLRE----------------KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPC 259 (377)
Q Consensus 204 -------~~~r~----------------~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 259 (377)
..+|+ .+.|..++...+ .+|+.||+.|.... ....+.. +.++.+..
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~-~~~~~~~---------~~L~~vgL 158 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI-PKIARKL---------QTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh-hhHHHHH---------HHHHHcCC
Confidence 01111 144444444332 56777777653211 0111222 23333333
Q ss_pred Ccc-cccCCCCCChHHHHHHHHHHHHcCC---CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH
Q 017091 260 GYE-TLVDDDLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 260 ~~~-~~~~~~~LSgGq~QRv~iAral~~~---p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
++. ......+|||||+||++|||+|+.+ |+++||||||++||+.....+.+.|+++.+ .|.|+|+|||+++.+
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~---~g~tvIiitH~~~~i 235 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD---KGNTVVVIEHNLDVI 235 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHH
Confidence 321 1122367999999999999999996 799999999999999999999999999864 478999999999999
Q ss_pred HhcCeEEEE------eCCEEEEEcCh
Q 017091 336 KAVDRIVVI------DDGRIIEVGNH 355 (377)
Q Consensus 336 ~~~d~v~~l------~~G~i~~~g~~ 355 (377)
..||++++| ++|+|++.|++
T Consensus 236 ~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 236 KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 889999999 89999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=246.70 Aligned_cols=212 Identities=22% Similarity=0.364 Sum_probs=173.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++++||+..- -|-.+|..+..||++-+|||||||||||+-.++|+. |.+|+|.++|.++..++..++.++-
T Consensus 3 l~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhR 74 (248)
T COG4138 3 LMQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHR 74 (248)
T ss_pred eeeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHH
Confidence 47888887532 477899999999999999999999999999999998 6899999999999999888888889
Q ss_pred EEEccCC-cCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC---
Q 017091 211 GFVGQEP-QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR--- 286 (377)
Q Consensus 211 ~~v~Q~~-~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~--- 286 (377)
+|+.|+. ..|.+-|+..+.+..|.......+.+.+...++.+.+.+. .+.|||||.|||-+|-..++
T Consensus 75 AYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs---------~~qLSGGEWQRVRLAav~LQv~P 145 (248)
T COG4138 75 AYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRS---------TNQLSGGEWQRVRLAAVVLQITP 145 (248)
T ss_pred HHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhh---------hhhcCcccceeeEEeEEEEEecC
Confidence 9999876 4678999999987644322223333444444333322211 26799999999999998875
Q ss_pred --C--CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh-HHhcCeEEEEeCCEEEEEcChHHHhhc
Q 017091 287 --D--PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 287 --~--p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~-~~~~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
| .++||+|||.++||...+..+-..|.++.+ .|.+|||.+||++. ++.||+++.+..|++...|..+|++..
T Consensus 146 d~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~---~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 146 DANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ---QGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh---CCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 3 379999999999999999999999998864 69999999999984 678999999999999999999999875
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
+
T Consensus 223 ~ 223 (248)
T COG4138 223 P 223 (248)
T ss_pred H
Confidence 3
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-31 Score=264.57 Aligned_cols=217 Identities=26% Similarity=0.430 Sum_probs=172.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH-HHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~ 209 (377)
.++++|++.. ..++|+||++++||++||.|--|||+|=|+++|.|..++.+|+|.+||+++...++. ..+..
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 3667766531 258999999999999999999999999999999999999999999999998876654 57788
Q ss_pred eEEEccCC---cCc-cccHHHHHhcCCCCCCCHH-HHHHHHHHcCHHHHHHhCCCCcccc-cCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEP---QLL-QMDIKSNIMYGCPKDVKNE-DIEWAAKQAYVHEFILSLPCGYETL-VDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~---~l~-~~tv~eni~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~LSgGq~QRv~iAra 283 (377)
|+|||.|- -++ ..+|++|+.+......... -+....++....+++..+....... ....+||||-||||.|||.
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarw 415 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARW 415 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHH
Confidence 99999876 355 7899999977521111100 1222333334455666553221111 1235799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChHH
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~~ 357 (377)
|..+|++|||||||.|+|.-++.+|.++|+++.+ +|++||+||-++.++- .||||+||++|+|+..-+.++
T Consensus 416 L~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~---~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 416 LATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA---EGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HhcCCCEEEECCCCcCcccchHHHHHHHHHHHHH---CCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999999999999999999999999999975 5999999999999986 599999999999998655554
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=243.85 Aligned_cols=191 Identities=20% Similarity=0.194 Sum_probs=136.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEe-CCcEEEEEcCCCCcHHHHHHHHhh-CCCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIE-ANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~-~Ge~~~ivG~nGsGKSTLl~~l~g-l~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
.|+++|+. +|.+. ++++|+.. +|++++|+||||||||||+++|++ ++.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 48899997 77532 56777654 589999999999999999999995 555555555443 1111122223456
Q ss_pred ceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHH--HHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 209 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWA--AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 209 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
.|++++|++..... +. .+. ..+.+...+. +...++.++++..+ ..|||||+||++||||++.
T Consensus 77 ~v~~~f~~~~~~~~-~~---r~~---gl~~~~~~~~~~l~~g~l~~~l~~~~---------~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 77 EVSFTFQLGGKKYR-VE---RSR---GLDYDQFTRIVLLPQGEFDRFLARPV---------STLSGGETFLASLSLALAL 140 (213)
T ss_pred EEEEEEEECCeEEE-EE---Eec---CCCHHHHHHhhhhhhcchHHHhcCCc---------cccCHHHHHHHHHHHHHHh
Confidence 69999998743211 11 111 2222322221 22333444444333 5799999999999999985
Q ss_pred ----------CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCE
Q 017091 287 ----------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 348 (377)
Q Consensus 287 ----------~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~ 348 (377)
+|+++||||||++||+.+...+.+.+.++++ .+.|+|+|||+++.+.. ||+++++++|-
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~---~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT---ENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 5789999999999999999999999998853 37899999999998876 89999999884
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=247.03 Aligned_cols=190 Identities=22% Similarity=0.291 Sum_probs=129.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh----------------hCCCCCCC-----
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL----------------RLYEPSDG----- 189 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~----------------gl~~p~~G----- 189 (377)
.|+++|. ++|++ ..++++++ |++++|+||||||||||+++|+ ++..+.+|
T Consensus 3 ~i~~~nf-ksy~~---~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 3 QVIIQGF-KSYKD---QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEEeCc-cCccc---CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 3677776 46754 35888887 7899999999999999999998 45556666
Q ss_pred ---eEEECCEeCC-CC--CHHHHhcceEEEccCCcCcc--ccHHHHHhc----CCCCCC-----CHHHHHHHHHHcCHHH
Q 017091 190 ---QIYIDGFPLT-DL--DIRWLREKIGFVGQEPQLLQ--MDIKSNIMY----GCPKDV-----KNEDIEWAAKQAYVHE 252 (377)
Q Consensus 190 ---~I~i~g~~i~-~~--~~~~~r~~i~~v~Q~~~l~~--~tv~eni~~----~~~~~~-----~~~~~~~~~~~~~l~~ 252 (377)
+|.+++.+-. .. ....+++.+++++|++.++. .|..|+..+ +..... ...++.+. ..+.+
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l---~~l~~ 150 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSL---TNMKQ 150 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHh---hhccc
Confidence 6666553211 00 11234567899888877663 355444322 111100 00011111 11100
Q ss_pred HHHhCCCCcccccCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEE
Q 017091 253 FILSLPCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVI 328 (377)
Q Consensus 253 ~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~----~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~i 328 (377)
. .......||||||||++||||++ .+|+++|+||||++||+.+.+.+.+.|+++. ++.++|++
T Consensus 151 ~---------~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~----~~~~ii~~ 217 (243)
T cd03272 151 D---------EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELS----DGAQFITT 217 (243)
T ss_pred c---------ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHh----CCCEEEEE
Confidence 0 01123579999999999999996 3689999999999999999999999999884 26788999
Q ss_pred ecCchhHHhcCeEEEEe
Q 017091 329 AHRLSTIKAVDRIVVID 345 (377)
Q Consensus 329 tH~l~~~~~~d~v~~l~ 345 (377)
||+.+....||++++|.
T Consensus 218 ~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 218 TFRPELLEVADKFYGVK 234 (243)
T ss_pred ecCHHHHhhCCEEEEEE
Confidence 99877666799999986
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=244.31 Aligned_cols=199 Identities=15% Similarity=0.235 Sum_probs=137.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC-CCeEEECCE-eCCCCC--HHHH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGF-PLTDLD--IRWL 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~-~i~~~~--~~~~ 206 (377)
.|+++|. ++|.+. .++.+ +. ..+++|+||||||||||+++|++++.|. .|++++.|. ++-... ....
T Consensus 5 ~~~~~~f-~~~~~~---~~~~~----~~-~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~ 75 (251)
T cd03273 5 EIILDGF-KSYATR---TVISG----FD-PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGIT 75 (251)
T ss_pred EEEEeCc-cccCcC---Eeecc----CC-CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCc
Confidence 3677776 566432 12222 22 5699999999999999999999999886 468888776 432111 1122
Q ss_pred hcceEEEccCCc---------Cc-cccHHHHHhcCCCC-------CCCHHHHHHHHHHcCHH--------------HHHH
Q 017091 207 REKIGFVGQEPQ---------LL-QMDIKSNIMYGCPK-------DVKNEDIEWAAKQAYVH--------------EFIL 255 (377)
Q Consensus 207 r~~i~~v~Q~~~---------l~-~~tv~eni~~~~~~-------~~~~~~~~~~~~~~~l~--------------~~~~ 255 (377)
+..|++++|++. +. ..||.+|+..+... ....+++.+.++.+++. +++.
T Consensus 76 ~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~ 155 (251)
T cd03273 76 KASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLN 155 (251)
T ss_pred EEEEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHH
Confidence 457999999862 22 46888877654211 11233444455555442 0000
Q ss_pred hCCCCcccccCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 017091 256 SLPCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR 331 (377)
Q Consensus 256 ~~~~~~~~~~~~~~LSgGq~QRv~iAral~----~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~ 331 (377)
. .........+||||||||++|||||+ .+|+++|+||||++||+.+.+.+.+.|+++. +|.|+|+|||+
T Consensus 156 ~---~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~----~g~~ii~iSH~ 228 (251)
T cd03273 156 M---GGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF----KGSQFIVVSLK 228 (251)
T ss_pred h---HHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc----CCCEEEEEECC
Confidence 0 00011123579999999999999997 5789999999999999999999999999873 37899999999
Q ss_pred chhHHhcCeEEEEe
Q 017091 332 LSTIKAVDRIVVID 345 (377)
Q Consensus 332 l~~~~~~d~v~~l~ 345 (377)
.+.+..||+++-+.
T Consensus 229 ~~~~~~~d~v~~~~ 242 (251)
T cd03273 229 EGMFNNANVLFRTR 242 (251)
T ss_pred HHHHHhCCEEEEEE
Confidence 77778899998875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-30 Score=231.83 Aligned_cols=165 Identities=22% Similarity=0.309 Sum_probs=127.7
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHh----hCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCC-----cCc-cc
Q 017091 153 VCLTIEANEVVAIVGLSGSGKSTFVNLLL----RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP-----QLL-QM 222 (377)
Q Consensus 153 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~----gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-----~l~-~~ 222 (377)
.++++.+| +++|+||||||||||+++|. |..+|++|.+..+...+.. ...+..|++++|++ .+. ..
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566777 99999999999999999994 9999988877622222222 22356799999998 223 35
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH------HHHHHHHcCCCCEEEEeCc
Q 017091 223 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR------IAIARAILRDPAILLLDEA 296 (377)
Q Consensus 223 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR------v~iAral~~~p~illlDEP 296 (377)
|+.+|+.+. + .+++. +.++..+ ..||+||+|| ++||||++.+|+++|+|||
T Consensus 92 ~~~~~~~~~-~----~~~~~---------~~~~~~~---------~~LS~G~~~~~~la~rlala~al~~~p~illlDEP 148 (204)
T cd03240 92 AILENVIFC-H----QGESN---------WPLLDMR---------GRCSGGEKVLASLIIRLALAETFGSNCGILALDEP 148 (204)
T ss_pred hHhhceeee-c----hHHHH---------HHHhcCc---------cccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 899998764 1 22221 2223333 5799999996 7899999999999999999
Q ss_pred CCCCCHHHHH-HHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeC
Q 017091 297 TSALDSESEH-YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346 (377)
Q Consensus 297 ts~LD~~~~~-~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~ 346 (377)
|++||+.+.. .+.+.+.+++++ .+.|+|++||+++.+..||++++|++
T Consensus 149 ~~~LD~~~~~~~l~~~l~~~~~~--~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 149 TTNLDEENIEESLAEIIEERKSQ--KNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred ccccCHHHHHHHHHHHHHHHHhc--cCCEEEEEEecHHHHhhCCEEEEEee
Confidence 9999999999 999999988542 26899999999998878999999964
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-30 Score=253.25 Aligned_cols=200 Identities=25% Similarity=0.381 Sum_probs=159.6
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
+.+.+.||+|.|++++ .++++++|-|..++.+|+|||||||||||||++.|.+.|..|.|.-.-. .+
T Consensus 388 pvi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~ 454 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NK 454 (614)
T ss_pred CeEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------cc
Confidence 3589999999998753 6999999999999999999999999999999999999999998864322 23
Q ss_pred eEEEccCCc---CccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 210 IGFVGQEPQ---LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 210 i~~v~Q~~~---l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
+++..|+.. .+..+..|++.-..+.....+.+...+.++++.......|. .+||+|||.||++||.++.
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~--------~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM--------SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch--------hhcccccchhHHHHHHHhc
Confidence 455555542 24667888876432322345566667777766544433332 5799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEE-EcChH
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE-VGNHA 356 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~-~g~~~ 356 (377)
+|.+|||||||++||..+...+.+.|.++ .-+||+||||...+.. +++|++.++|.+.. .|+..
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe~------~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINEF------PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhcc------CCceeeeechhhHHHHHHHHhHhhccCceeecCccHH
Confidence 99999999999999999999999988876 2389999999999976 99999999988764 35443
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-28 Score=236.04 Aligned_cols=317 Identities=21% Similarity=0.272 Sum_probs=216.5
Q ss_pred hhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------cCCcC--
Q 017091 3 RTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIM------------IGQVS-- 68 (377)
Q Consensus 3 ~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~------------~g~lt-- 68 (377)
++|..|+..+.+.+..++..+.+........+...++...-.++.- -.|-|.-+|+ .++.+
T Consensus 314 EEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mK-----YvWsg~GlvmvsiPI~~~t~~s~~~~~~~ 388 (728)
T KOG0064|consen 314 EEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMK-----YTWSGTGLVMVSIPILTSTLASEGTLQLS 388 (728)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhccCceEEEEeeeeecccCCCCccccc
Confidence 5788888888888888887777666544443333333322222210 1232222221 12211
Q ss_pred -HHH--HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C----------CCCcccc------ccc
Q 017091 69 -PEQ--LTKYV---LYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL---L----------PSNQFLS------EGV 123 (377)
Q Consensus 69 -~g~--l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~---~----------~~~~~~~------~~~ 123 (377)
.|. .-.|+ -+.......+.+++..+.++.+..+-..|++++++. . ++..... ++.
T Consensus 389 e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~ 468 (728)
T KOG0064|consen 389 EEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSN 468 (728)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCC
Confidence 111 11222 223333455667777777777777777787755421 1 1110000 000
Q ss_pred ccc-----cccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeC
Q 017091 124 KLQ-----RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 198 (377)
Q Consensus 124 ~~~-----~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i 198 (377)
+.+ .....|.++||-.--|.. ..++..+||+|++|-.+.|+||||||||+|+|+|.|+.|...|...+
T Consensus 469 ~l~~~~~i~~~~gI~lenIpvItP~~--~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~----- 541 (728)
T KOG0064|consen 469 PLPTTDAIRNFNGIILENIPVITPAG--DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI----- 541 (728)
T ss_pred cCCccchhhcccceEEecCceeccCc--ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec-----
Confidence 000 011248999998887764 36889999999999999999999999999999999999987776543
Q ss_pred CCCCHHHHhcceEEEccCCcCccccHHHHHhcCCC------CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC-CCCC
Q 017091 199 TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLS 271 (377)
Q Consensus 199 ~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~LS 271 (377)
+ .+.++-|+||.|++--+|.+|.|-|+.. ...++.++...++.+.++..+++ ..|.+...+- ..||
T Consensus 542 ---P---~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr-~~g~da~~dWkd~Ls 614 (728)
T KOG0064|consen 542 ---P---RPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQR-EGGWDAVRDWKDVLS 614 (728)
T ss_pred ---C---CCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHh-ccChhhhccHHhhcc
Confidence 1 1345999999998778899999988642 34566778888888888765554 3456665553 4699
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE
Q 017091 272 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 344 (377)
Q Consensus 272 gGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l 344 (377)
||||||+++||.+.++|+.-+|||.||+..++.+..+.+..++. |.+.|-|||+++..+.-...+-.
T Consensus 615 gGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~------gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 615 GGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA------GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred chHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc------CceEEEeecCccHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999888765 89999999999988765444444
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-30 Score=235.44 Aligned_cols=185 Identities=22% Similarity=0.245 Sum_probs=127.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++|.. +|++. .+++++++ ++++|+|||||||||++++|. +++|.+... ..++++
T Consensus 5 ~l~l~nfk-~~~~~---~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~~----~~~~~i 61 (212)
T cd03274 5 KLVLENFK-SYAGE---QVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRASK----MRQKKL 61 (212)
T ss_pred EEEEECcc-cCCCC---eeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHHH----hhhhhH
Confidence 47888885 78643 59999988 899999999999999999997 334543321 123569
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCCCCHHHH-----HH-HHH----HcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDI-----EW-AAK----QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~-----~~-~~~----~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
++++|+..++ ..|+++++.+..... ..+.. .. ... ...+. .+..++...++. ...||+|||||++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~~~~~~~~v~~~~~~-~~~~L~~~~~~~--~~~lS~G~~~r~~ 137 (212)
T cd03274 62 SDLIHNSAGHPNLDSCSVEVHFQEII-DKPLLKSKGIDLDHNRFLILQGEVE-QIAQMPKKSWKN--ISNLSGGEKTLSS 137 (212)
T ss_pred HHHhcCCCCCCCCceEEEEEEEEeCC-CHHHHHHCCcCCCCCceEEcCCcEE-Eeeccccccccc--hhhcCHHHHHHHH
Confidence 9999988765 456666654431110 00000 00 000 00000 011223222222 2469999999999
Q ss_pred HHHHHcC----CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeC
Q 017091 280 IARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346 (377)
Q Consensus 280 iAral~~----~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~ 346 (377)
||||++. +|+++++||||++||+.+...+.+.++++. ++.|+|++||+.+....||+|++|..
T Consensus 138 la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~----~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 138 LALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT----KNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc----CCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 9999974 589999999999999999999999999884 35699999999776677999999964
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-29 Score=217.81 Aligned_cols=228 Identities=23% Similarity=0.340 Sum_probs=177.4
Q ss_pred cEEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC----CCCeEEECCEeCCCCCHHH
Q 017091 131 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p----~~G~I~i~g~~i~~~~~~~ 205 (377)
-+.++|++..+.... ...+++++|+++.+||+-|+||+||||||-..|.|+|..+- +.-..++++.++-.+++++
T Consensus 3 LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred cccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence 356777777774322 34699999999999999999999999999999999999762 4566788888888888877
Q ss_pred Hhc----ceEEEccCCcC--c-cccH----HHHHhcC----CC---CCCCHHHHHHHHHHcCHHH---HHHhCCCCcccc
Q 017091 206 LRE----KIGFVGQEPQL--L-QMDI----KSNIMYG----CP---KDVKNEDIEWAAKQAYVHE---FILSLPCGYETL 264 (377)
Q Consensus 206 ~r~----~i~~v~Q~~~l--~-~~tv----~eni~~~----~~---~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~ 264 (377)
.|+ .|+++||+|.- - +.+| .+||-.. .. ..-...+..+.+.++|+.+ ....+|
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP------ 156 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP------ 156 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc------
Confidence 664 58899999963 2 3344 3444211 00 0111233445556666643 233444
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEE
Q 017091 265 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVV 343 (377)
Q Consensus 265 ~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~ 343 (377)
.+|--||-|+|.||.|++.+|++||.||||+++|+.++.+++++|..+.+. +|.||++++||+..+.. ||+|-|
T Consensus 157 ---~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn--~~TtILL~s~Dl~~is~W~d~i~V 231 (330)
T COG4170 157 ---YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQN--SNTTILLISHDLQMISQWADKINV 231 (330)
T ss_pred ---chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhcc--CCceEEEEcccHHHHHHHhhheEE
Confidence 579999999999999999999999999999999999999999999998764 68899999999999965 999999
Q ss_pred EeCCEEEEEcChHHHhhc-CHHHHHHH
Q 017091 344 IDDGRIIEVGNHAELLHK-GRLYAKLV 369 (377)
Q Consensus 344 l~~G~i~~~g~~~~l~~~-~~~~~~~~ 369 (377)
|.-|+-+|.+..+++++. +..|.+.+
T Consensus 232 lYCGQ~~ESa~~e~l~~~PhHPYTqAL 258 (330)
T COG4170 232 LYCGQTVESAPSEELVTMPHHPYTQAL 258 (330)
T ss_pred EEecccccccchhHHhcCCCCchHHHH
Confidence 999999999999999875 34465544
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-28 Score=269.72 Aligned_cols=214 Identities=21% Similarity=0.310 Sum_probs=146.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHH---------HHhhCCCCCCC----e----EEE
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN---------LLLRLYEPSDG----Q----IYI 193 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~---------~l~gl~~p~~G----~----I~i 193 (377)
.++++|++. ..|+|+||+|++||+++|+|+||||||||++ .|.|...|..+ . |.+
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 366776641 3799999999999999999999999999999 55664333111 1 234
Q ss_pred CCEeCCCCC----HH------HHh---------c-----ceEEEccC------------------C--------------
Q 017091 194 DGFPLTDLD----IR------WLR---------E-----KIGFVGQE------------------P-------------- 217 (377)
Q Consensus 194 ~g~~i~~~~----~~------~~r---------~-----~i~~v~Q~------------------~-------------- 217 (377)
|-.++...+ .. ++| + ...|.|+. +
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 333332210 00 222 1 12234442 0
Q ss_pred ------cCc-cccHHHHHhcCCCCC----CCHHHHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHHHHHHHc
Q 017091 218 ------QLL-QMDIKSNIMYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 218 ------~l~-~~tv~eni~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~ 285 (377)
..+ ..||.||+.++.... ....++.+ . + +.++.+..++. ......+|||||+||++|||||+
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~---~--l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~ 825 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHE---K--I-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELL 825 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHH---H--H-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHh
Confidence 022 347888887652100 00111111 1 1 23344333322 12223679999999999999997
Q ss_pred ---CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEe------CCEEEEEcChH
Q 017091 286 ---RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID------DGRIIEVGNHA 356 (377)
Q Consensus 286 ---~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~------~G~i~~~g~~~ 356 (377)
.+|+++||||||++||+.+.+.+.+.|.++.+ .|.|||+|||+++.+..||++++|. +|+++..|+++
T Consensus 826 ~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~---~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 826 APSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH---QGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred hcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 69999999999999999999999999999864 4889999999999996699999996 79999999999
Q ss_pred HHhhc
Q 017091 357 ELLHK 361 (377)
Q Consensus 357 ~l~~~ 361 (377)
++...
T Consensus 903 el~~~ 907 (1809)
T PRK00635 903 ELIHL 907 (1809)
T ss_pred HHHhc
Confidence 98764
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-28 Score=260.07 Aligned_cols=111 Identities=31% Similarity=0.487 Sum_probs=94.5
Q ss_pred HHHHhCCCCccc-ccCCCCCChHHHHHHHHHHHHcCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEE
Q 017091 252 EFILSLPCGYET-LVDDDLLSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 327 (377)
Q Consensus 252 ~~~~~~~~~~~~-~~~~~~LSgGq~QRv~iAral~~~p---~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~ 327 (377)
+.++.+..++.. .....+|||||+||+.|||+|+.+| +++||||||+|||+.....+.+.|+++.+ .|.|||+
T Consensus 812 ~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~---~G~TVIi 888 (943)
T PRK00349 812 QTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD---KGNTVVV 888 (943)
T ss_pred HHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEE
Confidence 345555544422 2224679999999999999999999 99999999999999999999999999864 4889999
Q ss_pred EecCchhHHhcCeEEEE------eCCEEEEEcChHHHhhcCHHH
Q 017091 328 IAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGRLY 365 (377)
Q Consensus 328 itH~l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~~~~ 365 (377)
|||+++.+..||+|++| ++|+|++.|+++++......+
T Consensus 889 itH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~ 932 (943)
T PRK00349 889 IEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASY 932 (943)
T ss_pred EecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccH
Confidence 99999999889999999 799999999999998766444
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=231.91 Aligned_cols=217 Identities=26% Similarity=0.462 Sum_probs=174.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeC-CCCCHHHHh-c
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL-TDLDIRWLR-E 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i-~~~~~~~~r-~ 208 (377)
.++++|++..-.. +.+.+++|||+|++||++||.|-.|-|-+-|+.+|+|+.+|.+|+|.++|+++ ...++.++| .
T Consensus 257 vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 257 VLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred EEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 5999999986543 24689999999999999999999999999999999999999999999999997 566776655 5
Q ss_pred ceEEEccCCc---C-ccccHHHHHhcCCCCC--------CCHHHHHHHHHHcCHHHHHHhCCCC-cccccCCCCCChHHH
Q 017091 209 KIGFVGQEPQ---L-LQMDIKSNIMYGCPKD--------VKNEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQK 275 (377)
Q Consensus 209 ~i~~v~Q~~~---l-~~~tv~eni~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~LSgGq~ 275 (377)
.+||||.|.+ + ..+|+.||+.++.... .....+.. ...+.++++.-- -........||||.+
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~-----~a~~li~~fdVr~~~~~~~a~~LSGGNq 409 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRK-----FARELIEEFDVRAPSPDAPARSLSGGNQ 409 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHH-----HHHHHHHHcCccCCCCCcchhhcCCcce
Confidence 6999999874 3 4789999997753211 11122221 123344443211 111112257999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
||+-+||-|.++|++||+.+||-|||..+.+.+.+.|.+.++ .|+.|++||-|++++-. ||||.||.+|+|+...+
T Consensus 410 QK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~---~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~ 486 (501)
T COG3845 410 QKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD---AGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVP 486 (501)
T ss_pred ehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh---cCCEEEEEehhHHHHHHhhheeeeeeCCceecccc
Confidence 999999999999999999999999999999999999998864 59999999999999865 99999999999998877
Q ss_pred hHH
Q 017091 355 HAE 357 (377)
Q Consensus 355 ~~~ 357 (377)
+++
T Consensus 487 ~~~ 489 (501)
T COG3845 487 PEE 489 (501)
T ss_pred ccc
Confidence 765
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-29 Score=264.80 Aligned_cols=212 Identities=28% Similarity=0.483 Sum_probs=167.5
Q ss_pred EEEEEEEEcCCC-CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC--CCCCeEEECCEeCCCCCHHHHhcc
Q 017091 133 QFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 133 ~~~~v~~~y~~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..+|+.+.-+.+ ..+++|+|||=-++||-.+||+|+|||||||||++|+|-.. ..+|+|+++|.+..+ +..++.
T Consensus 789 ~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~ 865 (1391)
T KOG0065|consen 789 YWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARV 865 (1391)
T ss_pred EEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccc
Confidence 344454443211 23579999999999999999999999999999999998753 248999999998753 567888
Q ss_pred eEEEccCC-cCccccHHHHHhcCC----CCCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHH
Q 017091 210 IGFVGQEP-QLLQMDIKSNIMYGC----PKDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRI 278 (377)
Q Consensus 210 i~~v~Q~~-~l~~~tv~eni~~~~----~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv 278 (377)
+|||.|+. ++-..||+|-+.|.. +.+.+. +.+++..+..+++++.+.+ +| +..||..||+|+
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~dai-------VG~~G~GLs~eQRKrL 938 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADAL-------VGLPGSGLSTEQRKRL 938 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhh-------ccCCCCCCCHHHhcee
Confidence 99999977 455789999998742 223332 2344455555555443332 22 256999999999
Q ss_pred HHHHHHcCCC-CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh--HHhcCeEEEEe-CCEEEEEcC
Q 017091 279 AIARAILRDP-AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVID-DGRIIEVGN 354 (377)
Q Consensus 279 ~iAral~~~p-~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~--~~~~d~v~~l~-~G~i~~~g~ 354 (377)
.||--|+.|| .||+|||||||||..+...+++.++++.+ .|+||+++-|.++. .+..|+++.|+ +|+.+..|+
T Consensus 939 TIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~---tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~ 1015 (1391)
T KOG0065|consen 939 TIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD---TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGP 1015 (1391)
T ss_pred eEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh---cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecC
Confidence 9999999999 99999999999999999999999999974 69999999999985 36699999997 689999997
Q ss_pred hHH
Q 017091 355 HAE 357 (377)
Q Consensus 355 ~~~ 357 (377)
..+
T Consensus 1016 lG~ 1018 (1391)
T KOG0065|consen 1016 LGE 1018 (1391)
T ss_pred ccc
Confidence 643
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=223.24 Aligned_cols=202 Identities=19% Similarity=0.215 Sum_probs=132.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEe-C-CC-----CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-L-TD-----LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~-i-~~-----~~~ 203 (377)
.|+++|. ++|.+. . +|...++ +++|+||||||||||+.+|+++..+..|++..++.+ + .. .+.
T Consensus 3 ~i~l~nf-~~~~~~---~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~ 72 (247)
T cd03275 3 RLELENF-KSYKGR---H-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDS 72 (247)
T ss_pred EEEEECc-cccCCC---e-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCC
Confidence 3778886 566421 1 1222334 999999999999999999999998888887654421 1 10 111
Q ss_pred HHHhcceEEEccCCc--CccccHHHHH-hcCC-CCCCCHHHHHHHHHHcCHH--------------HHHHhCCCCccccc
Q 017091 204 RWLREKIGFVGQEPQ--LLQMDIKSNI-MYGC-PKDVKNEDIEWAAKQAYVH--------------EFILSLPCGYETLV 265 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~--l~~~tv~eni-~~~~-~~~~~~~~~~~~~~~~~l~--------------~~~~~~~~~~~~~~ 265 (377)
....-.+.|..|++. .+..++.+.. .+.. ....+.+++.+.++..++. ++.+..|.+. ...
T Consensus 73 ~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~-~~~ 151 (247)
T cd03275 73 NSAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGK-RFR 151 (247)
T ss_pred ceEEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcch-hhh
Confidence 122233555555442 2233333221 1111 1123345555566666552 2222222111 011
Q ss_pred CCCCCChHHHHHHHHHHHHcCC----CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeE
Q 017091 266 DDDLLSGGQKQRIAIARAILRD----PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 266 ~~~~LSgGq~QRv~iAral~~~----p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
...+||||||||++||||++.+ |+++||||||++||+.....+.+.|.++.+ .|.++|+|||+.+.+..||++
T Consensus 152 ~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~---~g~~vi~isH~~~~~~~~d~i 228 (247)
T cd03275 152 DMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG---PNFQFIVISLKEEFFSKADAL 228 (247)
T ss_pred hHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc---CCcEEEEEECCHHHHhhCCeE
Confidence 1256999999999999999864 999999999999999999999999998853 378999999998888789999
Q ss_pred EEEeC
Q 017091 342 VVIDD 346 (377)
Q Consensus 342 ~~l~~ 346 (377)
++|..
T Consensus 229 ~~~~~ 233 (247)
T cd03275 229 VGVYR 233 (247)
T ss_pred EEEEe
Confidence 99864
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=223.00 Aligned_cols=172 Identities=27% Similarity=0.376 Sum_probs=135.3
Q ss_pred ceeeeeEEE-----eCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCc-Cccc
Q 017091 149 ILNHVCLTI-----EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ-LLQM 222 (377)
Q Consensus 149 vL~~isl~i-----~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-l~~~ 222 (377)
.+.++.|++ ..||+++++||||-||||++|+|+|.++|++|+ ..+ -+|+|=||-.. -|++
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~g 416 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDG 416 (591)
T ss_pred ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCC
Confidence 455666665 456889999999999999999999999999997 222 24889898653 2689
Q ss_pred cHHHHHhcCCCCCCC-HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCC
Q 017091 223 DIKSNIMYGCPKDVK-NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 301 (377)
Q Consensus 223 tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD 301 (377)
||.+.+.-..+.... ..-..+..+-..+++.+++.- .+|||||.|||+||.||.++++++|||||++.||
T Consensus 417 tV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v---------~~LSGGELQRvaIaa~L~reADlYllDEPSA~LD 487 (591)
T COG1245 417 TVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPV---------DELSGGELQRVAIAAALSREADLYLLDEPSAYLD 487 (591)
T ss_pred cHHHHHHHhhhhhcccchhHHhhcCccchHHHHhccc---------ccCCchhHHHHHHHHHhccccCEEEecCchhhcc
Confidence 999988643221111 111123445556666655432 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe
Q 017091 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 345 (377)
Q Consensus 302 ~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~ 345 (377)
.+.+-.+.+.|+++... .++|.++|.||+-.+.. +||++|++
T Consensus 488 vEqR~~vakvIRR~~e~--~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 488 VEQRIIVAKVIRRFIEN--NEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHHHHHhh--cCceEEEEecceehhhhhhceEEEEe
Confidence 99999999999998753 57899999999999987 99999996
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=247.03 Aligned_cols=89 Identities=34% Similarity=0.540 Sum_probs=82.7
Q ss_pred CCCCChHHHHHHHHHHHHcC---CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEE
Q 017091 267 DDLLSGGQKQRIAIARAILR---DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 343 (377)
Q Consensus 267 ~~~LSgGq~QRv~iAral~~---~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~ 343 (377)
..+|||||+||++|||+|+. +|+++||||||++||+.....+.+.|+++.+ .|.|||+|||+++.+..||+|++
T Consensus 826 ~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~---~G~TVIvi~H~~~~i~~aD~ii~ 902 (924)
T TIGR00630 826 ATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD---QGNTVVVIEHNLDVIKTADYIID 902 (924)
T ss_pred cccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCCEEEE
Confidence 36799999999999999997 5999999999999999999999999999864 48899999999999988999999
Q ss_pred E------eCCEEEEEcChHHH
Q 017091 344 I------DDGRIIEVGNHAEL 358 (377)
Q Consensus 344 l------~~G~i~~~g~~~~l 358 (377)
| ++|+|++.|+++++
T Consensus 903 Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 903 LGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred ecCCccCCCCEEEEeCCHHHh
Confidence 9 79999999999875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-27 Score=210.26 Aligned_cols=177 Identities=20% Similarity=0.202 Sum_probs=118.5
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC-CHHHHhcceEEEccCCcCccccHHHH
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLREKIGFVGQEPQLLQMDIKSN 227 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~-~~~~~r~~i~~v~Q~~~l~~~tv~en 227 (377)
.++++++++.+| +.+|+||||||||||+..|.-....... ....|..+..+ ....-...|.+.+|+..++. |
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~ 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C
Confidence 346788888887 8899999999999999999754332211 11112211110 00011345788888766554 1
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH----cCCCCEEEEeCcCCCCCHH
Q 017091 228 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI----LRDPAILLLDEATSALDSE 303 (377)
Q Consensus 228 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral----~~~p~illlDEPts~LD~~ 303 (377)
+ ..... ...+.++++. . ........+||+|||||++||+|+ +.+|+++||||||++||+.
T Consensus 84 -----~--~~~~~------~~~~~~~l~~-~--~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 -----P--LCVLS------QDMARSFLTS-N--KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred -----c--CCHHH------HHHHHHHhcc-c--cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 1 11111 1112233332 1 111122367999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCE
Q 017091 304 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 348 (377)
Q Consensus 304 ~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~ 348 (377)
+...+.+.|.++.++...+.|||++||+++.+..+|+|.+|..++
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 999999999887532112468999999999998889999998753
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-26 Score=223.25 Aligned_cols=218 Identities=22% Similarity=0.371 Sum_probs=139.6
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE--CCEeCCCCCHHHHh
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI--DGFPLTDLDIRWLR 207 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i--~g~~i~~~~~~~~r 207 (377)
..+.++|++++|.+ ..+++|++|++.+|+.+||+|+|||||||+|++|.|-..|..=++-+ -.+++..-....+.
T Consensus 74 ~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~ 150 (614)
T KOG0927|consen 74 RDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQ 150 (614)
T ss_pred ccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHH
Confidence 35999999999975 36999999999999999999999999999999999998886544322 11111110001111
Q ss_pred cceEEEccCCcCccccHHHHHhcCCCCCCCHH---HHHHHHHHcCH-------HHHHHhCCCCcccccC---CCCCChHH
Q 017091 208 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE---DIEWAAKQAYV-------HEFILSLPCGYETLVD---DDLLSGGQ 274 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~---~~~~~~~~~~l-------~~~~~~~~~~~~~~~~---~~~LSgGq 274 (377)
.-+-...+...-.. --.|.+.-.+. +...+ .+..-++..+. ...+..+ |.....- ...||||+
T Consensus 151 ~v~~~~~~e~~rle-~~~E~l~~~~d-~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~gl--gf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 151 AVVMETDHERKRLE-YLAEDLAQACD-DKEKDELDELYERLDEMDNDTFEAKAAKILHGL--GFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHhhhhHHHHHHHH-HHHHHHHhhcc-chhhhHHHHHHHHHHhhCchhHHHHHHHHHHhc--CCCHhHHHHHhhccCchH
Confidence 00001111000000 00111111100 00000 11111111111 1111111 2111111 24699999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCe-EEEEEecCchhHHh-cCeEEEEeCCE-EEE
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-TVIVIAHRLSTIKA-VDRIVVIDDGR-IIE 351 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~-tvi~itH~l~~~~~-~d~v~~l~~G~-i~~ 351 (377)
|.|++|||||..+|++|||||||++||+++..-+.+.|.+. .+ ++|+++|.-+++.. |..|+.|++++ +..
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~------d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y 300 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY------DRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYY 300 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc------cCceEEEEecchhhhhhHhhhhheecccceeee
Confidence 99999999999999999999999999999998888888776 33 89999999999976 99999999999 556
Q ss_pred EcChHHHhh
Q 017091 352 VGNHAELLH 360 (377)
Q Consensus 352 ~g~~~~l~~ 360 (377)
.|+.+....
T Consensus 301 ~Gnydqy~~ 309 (614)
T KOG0927|consen 301 EGNYDQYVK 309 (614)
T ss_pred cCCHHHHhh
Confidence 777776653
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-26 Score=221.89 Aligned_cols=195 Identities=23% Similarity=0.336 Sum_probs=161.4
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
+.+++.+|+|.|+.+.. +.+.+++++++.-+.++++|+||+||||++|++.|-..|..|.+.+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 46999999999975432 799999999999999999999999999999999999999999887654 567
Q ss_pred eEEEccCCcC-ccccH--HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 210 IGFVGQEPQL-LQMDI--KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 210 i~~v~Q~~~l-~~~tv--~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
|+|-+|...= ++..+ .|-..-. .+...+++++..+..+|+..-+...+. ..||||||-||++|.+...
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~-~pG~~~ee~r~hl~~~Gl~g~la~~si--------~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKS-FPGKTEEEIRRHLGSFGLSGELALQSI--------ASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHh-CCCCCHHHHHHHHHhcCCCchhhhccc--------cccCCcchhHHHHHHHhcC
Confidence 9999997642 34333 3333222 224478888888888887655543331 4699999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEE
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 351 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~ 351 (377)
+|.+|+|||||+.||.++-..+.+.|+.+ +-.||+||||.+++.. |+.+|+.++|++..
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~F------~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKNF------NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHhc------CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 99999999999999999998888888877 2379999999999987 99999999999975
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-26 Score=224.70 Aligned_cols=199 Identities=23% Similarity=0.296 Sum_probs=138.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|..+|++..|+++ .+|++-++++..|..+||+||||+|||||||+|+. |.|.....+ .++|-
T Consensus 80 Di~~~~fdLa~G~k---~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g-- 142 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGK---ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRG-- 142 (582)
T ss_pred ceeeeeeeeeecch---hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheec--
Confidence 58999999999864 69999999999999999999999999999999987 444333221 11111
Q ss_pred EEEccCC-cCc-cccHHHHHhcCC--CCCCCHHHHHH-HHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 211 GFVGQEP-QLL-QMDIKSNIMYGC--PKDVKNEDIEW-AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 211 ~~v~Q~~-~l~-~~tv~eni~~~~--~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
-+++... .+- +.++.+-+.-.. ....+.+++.. ++.-.+..+-....|. ..||||-|-|++|||||.
T Consensus 143 ~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt--------~slSGGWrMrlaLARAlf 214 (582)
T KOG0062|consen 143 DDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT--------KSLSGGWRMRLALARALF 214 (582)
T ss_pred cchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc--------cccCcchhhHHHHHHHHh
Confidence 1111111 111 222333332110 00001222322 3334444333333332 579999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEE-EEcChHHHhh
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELLH 360 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~-~~g~~~~l~~ 360 (377)
.+||||||||||+.||..+..-+.+.|..+ +.|+|+||||-+++.. |..|+.+++-++- +.|+.+++..
T Consensus 215 ~~pDlLLLDEPTNhLDv~av~WLe~yL~t~------~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 215 AKPDLLLLDEPTNHLDVVAVAWLENYLQTW------KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred cCCCEEeecCCcccchhHHHHHHHHHHhhC------CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 999999999999999999988888887765 4799999999999976 8889999886663 4577766654
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=215.26 Aligned_cols=198 Identities=26% Similarity=0.420 Sum_probs=150.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.+-+.||+|.|++. ++.+++++|-|.-...+|||||||.||||||++|.|-+.|..|+.+-+ .|-+|
T Consensus 586 vLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRI 652 (807)
T ss_pred eeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeee
Confidence 57899999999874 589999999999999999999999999999999999999999987532 24469
Q ss_pred EEEccCCc--Cc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 211 GFVGQEPQ--LL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 211 ~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
|+..|+.. |- ..|-.|.+.-.. ....++.+..+-.+++...... +....|||||+-||++|---+..
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~F--Nlpyq~ARK~LG~fGL~sHAHT--------ikikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKF--NLPYQEARKQLGTFGLASHAHT--------IKIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhc--CCChHHHHHHhhhhhhhhccce--------EeeeecCCcchHHHHHHHHhcCC
Confidence 99998763 32 457777775432 2233334444444444322111 11246999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhc-CeEEEEeCCEEEE-EcChHH
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIE-VGNHAE 357 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~-d~v~~l~~G~i~~-~g~~~~ 357 (377)
|+||||||||++||.++...+.+.|.++. -.|||||||-.++... -..||+++..|-+ .|..++
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIney~------GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINEYN------GGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHhcc------CcEEEEecccceeeecCceEEEEccCChhhccccHHH
Confidence 99999999999999999999999998872 3799999999988652 3566666654433 344443
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=182.65 Aligned_cols=206 Identities=21% Similarity=0.318 Sum_probs=150.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC-CCH------
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-LDI------ 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~-~~~------ 203 (377)
.|++.++.|+|+.. .|++-|+|++++.|....+||.||||||||+|+|+|-.-.-.|.|.+.|.+--. -..
T Consensus 13 aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred eEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 59999999999865 389999999999999999999999999999999999887777999999976422 111
Q ss_pred ----HHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 204 ----RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 204 ----~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
.++++.+++--.-|.--..++.+-| ++... ...++-+ .+++-+. .+-.-.-+.+|-|||+||.
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~g-~dp~Rre---------~LI~iLD--Idl~WRmHkvSDGqrRRVQ 157 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVGG-DDPERRE---------KLIDILD--IDLRWRMHKVSDGQRRRVQ 157 (291)
T ss_pred eEecccccccccccccccccccccHHHHH-hhccC-CChhHhh---------hhhhhee--ccceEEEeeccccchhhhH
Confidence 1223333332222211134554433 33221 1112111 1122211 1111122569999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
|+..|++.=++|||||-|-.||..++..+++.+++-.++ +|.|||+.||-.+-++. ..+++.|.+|+++..-
T Consensus 158 icMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~--RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l 230 (291)
T KOG2355|consen 158 ICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQ--RGATIVYATHIFDGLETWPTHLVYIKSGKLVDNL 230 (291)
T ss_pred HHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhh--cCcEEEEEeeeccchhhcchhEEEecCCeeeecc
Confidence 999999999999999999999999999999999876553 58999999999988765 9999999999998743
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-23 Score=184.84 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=72.9
Q ss_pred hCCCCcccccCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 017091 256 SLPCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR 331 (377)
Q Consensus 256 ~~~~~~~~~~~~~~LSgGq~QRv~iAral~----~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~ 331 (377)
.+|.|..+.+ ||||||||++|||+++ .+|+++|+|||+++||+.....+.+.+.++.+ .|.|+|++||+
T Consensus 85 ~~~~~~~~~~----LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~---~g~tiIiiSH~ 157 (178)
T cd03239 85 LVLQGKVEQI----LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK---HTSQFIVITLK 157 (178)
T ss_pred EecCCcCccc----CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEECC
Confidence 3455544444 8999999999999996 69999999999999999999999999998853 36899999999
Q ss_pred chhHHhcCeEEEEeC
Q 017091 332 LSTIKAVDRIVVIDD 346 (377)
Q Consensus 332 l~~~~~~d~v~~l~~ 346 (377)
++.+..+|+++.+.+
T Consensus 158 ~~~~~~adrvi~i~~ 172 (178)
T cd03239 158 KEMFENADKLIGVLF 172 (178)
T ss_pred HHHHhhCCeEEEEEE
Confidence 998888999999975
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=189.64 Aligned_cols=147 Identities=17% Similarity=0.125 Sum_probs=108.3
Q ss_pred ceeeeeEEEeCCc-EEEEEcCCCCcHHHHHHHHh--------hCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcC
Q 017091 149 ILNHVCLTIEANE-VVAIVGLSGSGKSTFVNLLL--------RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL 219 (377)
Q Consensus 149 vL~~isl~i~~Ge-~~~ivG~nGsGKSTLl~~l~--------gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 219 (377)
.+-++||++.+|+ +++|+||||||||||+|+|. |.+.|.... ..++|+.|....
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~-----------------~~~~~~~~~~~~ 78 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG-----------------SSLPVFENIFAD 78 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc-----------------ccCcCccEEEEe
Confidence 4568999999995 79999999999999999998 444332110 124444443211
Q ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCC
Q 017091 220 LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 299 (377)
Q Consensus 220 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~ 299 (377)
+ +. .+ .+.. + ...+|+||||++.+++++ .+|+++|+||||++
T Consensus 79 l----------g~-----~~-------------~l~~---~------~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~g 120 (200)
T cd03280 79 I----------GD-----EQ-------------SIEQ---S------LSTFSSHMKNIARILQHA-DPDSLVLLDELGSG 120 (200)
T ss_pred c----------Cc-----hh-------------hhhc---C------cchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCC
Confidence 0 00 00 0110 0 035899999999999885 89999999999999
Q ss_pred CCHHHHHHHH-HHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEc
Q 017091 300 LDSESEHYVK-GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 300 LD~~~~~~i~-~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g 353 (377)
+|+.....+. ..++.+.+ .+.|+|++||+.+....||++++|++|++..++
T Consensus 121 lD~~~~~~i~~~~l~~l~~---~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 121 TDPVEGAALAIAILEELLE---RGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCHHHHHHHHHHHHHHHHh---cCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 9999988886 46777653 378999999996655669999999999998763
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-22 Score=183.28 Aligned_cols=183 Identities=15% Similarity=0.127 Sum_probs=111.1
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH-h-----cceEEEccCCcCcccc
Q 017091 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-R-----EKIGFVGQEPQLLQMD 223 (377)
Q Consensus 150 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r-----~~i~~v~Q~~~l~~~t 223 (377)
++++.+++.+| +.+|+||||||||||+..|.-..-...... .... ...++ + ..|-..++...- .=
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~~-----~~~~~i~~g~~~~~v~~~~~~~~~--~~ 84 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRAK-----KVGEFVKRGCDEGTIEIELYGNPG--NI 84 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-cccc-----CHHHHhhCCCCcEEEEEEEEeCCC--cc
Confidence 35566666555 779999999999999999876552211100 0000 01111 1 112222221100 00
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccc-ccCCCCCChHHHHHHHHHHHH----cCCCCEEEEeCcCC
Q 017091 224 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET-LVDDDLLSGGQKQRIAIARAI----LRDPAILLLDEATS 298 (377)
Q Consensus 224 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~LSgGq~QRv~iAral----~~~p~illlDEPts 298 (377)
..+|+.+. ...+.+.+..... -.+.+..++.+... ...+..||||||||+.+|+++ +.+|+++|+||||+
T Consensus 85 ~~~n~~~~----~~q~~~~~~~~~~-~~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~ 159 (213)
T cd03277 85 QVDNLCQF----LPQDRVGEFAKLS-PIELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ 159 (213)
T ss_pred ccCCceEE----EchHHHHHHHhCC-hHhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence 13333321 1223333333322 22444555544322 223468999999999877554 58999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCC-eEEEEEecCchhHH-hcC--eEEEEeCCE
Q 017091 299 ALDSESEHYVKGVLHALRNDCKTK-RTVIVIAHRLSTIK-AVD--RIVVIDDGR 348 (377)
Q Consensus 299 ~LD~~~~~~i~~~l~~l~~~~~~g-~tvi~itH~l~~~~-~~d--~v~~l~~G~ 348 (377)
+||+.+...+.+.+.++.++ .| .|+|++||++.... .|| +|++|++|+
T Consensus 160 ~LD~~~~~~i~~~l~~~~~~--~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 160 GMDPTNERKVFDMLVETACK--EGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred cCCHHHHHHHHHHHHHHhhc--CCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 99999999999999988542 24 58999999987654 465 788888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-22 Score=191.91 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=68.8
Q ss_pred CCChHHHHHHHHHHHHcC----CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE
Q 017091 269 LLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 344 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~----~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l 344 (377)
.|||||+||+++|++++. +|+++|+||||++||+.+...+.+.+.++. .+.|+|++||+++....||++++|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~----~~~tii~isH~~~~~~~~d~~~~l 245 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS----RSHQVLCITHLPQVAAMADNHFLV 245 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh----CCCEEEEEechHHHHHhcCcEEEE
Confidence 499999999999997654 999999999999999999999999999874 367999999999977779999999
Q ss_pred eCCEE
Q 017091 345 DDGRI 349 (377)
Q Consensus 345 ~~G~i 349 (377)
++|..
T Consensus 246 ~~~~~ 250 (276)
T cd03241 246 EKEVE 250 (276)
T ss_pred EEecC
Confidence 88643
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-22 Score=216.38 Aligned_cols=205 Identities=23% Similarity=0.385 Sum_probs=163.7
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC---CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cc
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QM 222 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ 222 (377)
..+|+|+|.-++||+.+.++||.|||||||++.++|-.+- ..|+|.+||.+.+.... ++.++|++|+...+ .+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 4699999999999999999999999999999999998753 35799999999887654 67799999987666 79
Q ss_pred cHHHHHhcCCC-------CC-CCHHHHHHHHHHcCHHHHHHhC--CCCcccccCC---CCCChHHHHHHHHHHHHcCCCC
Q 017091 223 DIKSNIMYGCP-------KD-VKNEDIEWAAKQAYVHEFILSL--PCGYETLVDD---DLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 223 tv~eni~~~~~-------~~-~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~---~~LSgGq~QRv~iAral~~~p~ 289 (377)
||+|-+.|... .+ ..+++-..+ -.+..++.+ ....+|.+|. ...|||||+||.+|-+++.+|+
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~----~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~ 280 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAA----MTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPAS 280 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHH----HHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcc
Confidence 99999977421 01 111111110 111222222 3356777774 4699999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh--HHhcCeEEEEeCCEEEEEcChHHHhh
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~--~~~~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
++..||+|.|||..+.-++.+.|+++.+. .+.|.+++-|..+. ....|.|++|.+|+++..|+.++.+.
T Consensus 281 ~~~~De~t~GLDSsTal~iik~lr~~a~~--~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 281 ILFWDEITRGLDSSTAFQIIKALRQLAHI--TGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred eeeeecccccccHHHHHHHHHHHHHHHhh--hcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 99999999999999999999999998764 47789998888764 45589999999999999999888753
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-22 Score=192.77 Aligned_cols=190 Identities=24% Similarity=0.301 Sum_probs=130.2
Q ss_pred EEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeC-----CCCCH-------
Q 017091 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL-----TDLDI------- 203 (377)
Q Consensus 136 ~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i-----~~~~~------- 203 (377)
++.-+|+.+. ..|..+- ..++|+++||+||||-||||-+|+|+|.+.|.=|+- ++.+- ..+.-
T Consensus 79 e~vHRYg~Ng--FkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF 153 (591)
T COG1245 79 EVVHRYGVNG--FKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYF 153 (591)
T ss_pred cceeeccCCc--eEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHH
Confidence 3556776432 2333322 367899999999999999999999999999987753 22110 00000
Q ss_pred HHHhc---ceEEEcc----CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 204 RWLRE---KIGFVGQ----EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 204 ~~~r~---~i~~v~Q----~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
+.+.. ++..=|| -|-.+.++|.|-+.-... .....+..++.++.+.+++- .++|||||.|
T Consensus 154 ~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de----~g~~devve~l~L~nvl~r~---------v~~LSGGELQ 220 (591)
T COG1245 154 KKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDE----RGKFDEVVERLGLENVLDRD---------VSELSGGELQ 220 (591)
T ss_pred HHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhh----cCcHHHHHHHhcchhhhhhh---------hhhcCchHHH
Confidence 01110 1222233 233345677776643211 01123344445555544432 2579999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 346 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~ 346 (377)
|+|||.|++++++++++|||||-||...+-...+.++++.+ .+++||+|.||+..+.. +|-|.++..
T Consensus 221 r~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~---~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 221 RVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAE---DGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhc---cCCeEEEEechHHHHHHhhheeEEEec
Confidence 99999999999999999999999999999999999999964 37899999999999987 899988863
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-21 Score=170.35 Aligned_cols=137 Identities=24% Similarity=0.283 Sum_probs=100.8
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEE-EccCCcCccccHHHHHhcC
Q 017091 153 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF-VGQEPQLLQMDIKSNIMYG 231 (377)
Q Consensus 153 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~-v~Q~~~l~~~tv~eni~~~ 231 (377)
.++.+.++.++.|+|||||||||+++.+....-..+|.+.... +. +.|+ +++....|
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~----------- 71 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL----------- 71 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE-----------
Confidence 3444555669999999999999999998766655555443310 00 1111 11111000
Q ss_pred CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC----CCCEEEEeCcCCCCCHHHHHH
Q 017091 232 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHY 307 (377)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~----~p~illlDEPts~LD~~~~~~ 307 (377)
+.. ...||+||+||+++||+|.. +|+++|+|||++++|+.....
T Consensus 72 ----------------------i~~----------~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 72 ----------------------IFT----------RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred ----------------------ehh----------eeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 000 02389999999999999986 789999999999999999999
Q ss_pred HHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeC
Q 017091 308 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346 (377)
Q Consensus 308 i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~ 346 (377)
+.+.+.++.+ ++.++|++||+++....+|+++.|+.
T Consensus 120 l~~~l~~~~~---~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 120 LAEAILEHLV---KGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHh---cCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 9999988754 26799999999999988999999964
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-21 Score=184.29 Aligned_cols=180 Identities=26% Similarity=0.406 Sum_probs=137.2
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC--------CCCCCCeEEECCEeCCCCCHHHHhcceEEEccC--
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--------YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE-- 216 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--------~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~-- 216 (377)
..+|+|+||+++||++++|+|+|||||||++++|+|. |+|++|.|.+--..+ -+++|-+
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~E 464 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYE 464 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-----------hhccCcccc
Confidence 4689999999999999999999999999999999997 679999987632221 2344443
Q ss_pred CcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCc
Q 017091 217 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 296 (377)
Q Consensus 217 ~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEP 296 (377)
|.+-..|+.|.+.-- ..+ .....+.+..+++.+..-. ......||-|||.|..||+++...|.+++.||-
T Consensus 465 p~f~~~tilehl~s~-tGD--~~~AveILnraGlsDAvly-------Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 465 PEFGEVTILEHLRSK-TGD--LNAAVEILNRAGLSDAVLY-------RRKFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred cccCchhHHHHHhhc-cCc--hhHHHHHHHhhccchhhhh-------hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 332245777776531 111 1122345666666543211 111257999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh--cCeEEEEeCCEE
Q 017091 297 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRI 349 (377)
Q Consensus 297 ts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~--~d~v~~l~~G~i 349 (377)
-|.||+.+..++..-|.++.++ .|.|++++||+.+.... -|.++.+.=|+.
T Consensus 535 ~AhLD~~TA~rVArkiselaRe--~giTlivvThrpEv~~AL~PD~li~vgYg~v 587 (593)
T COG2401 535 AAHLDELTAVRVARKISELARE--AGITLIVVTHRPEVGNALRPDTLILVGYGKV 587 (593)
T ss_pred hhhcCHHHHHHHHHHHHHHHHH--hCCeEEEEecCHHHHhccCCceeEEeecccc
Confidence 9999999999999999999865 58999999999999864 599988876654
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-21 Score=213.86 Aligned_cols=111 Identities=24% Similarity=0.350 Sum_probs=96.2
Q ss_pred HHHHhCCCCcccccCC-CCCChHHHHHHHHHHHHcCC---CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEE
Q 017091 252 EFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 327 (377)
Q Consensus 252 ~~~~~~~~~~~~~~~~-~~LSgGq~QRv~iAral~~~---p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~ 327 (377)
+.+..+..||.+.-.. .+|||||.||+-||.-|..+ +.++||||||.||++...+++++.|+++.. .|.|||+
T Consensus 1681 ~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~---~g~tviv 1757 (1809)
T PRK00635 1681 QALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVS---LGHSVIY 1757 (1809)
T ss_pred HHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh---cCCeEEE
Confidence 3456667777665443 57999999999999999876 789999999999999999999999999874 5899999
Q ss_pred EecCchhHHhcCeEEEE------eCCEEEEEcChHHHhhcCHHH
Q 017091 328 IAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGRLY 365 (377)
Q Consensus 328 itH~l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~~~~ 365 (377)
|.||++.++.||+|+-| +.|+|++.|+|+++.+....|
T Consensus 1758 ieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~ 1801 (1809)
T PRK00635 1758 IDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKDSL 1801 (1809)
T ss_pred EeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCc
Confidence 99999999999999999 468999999999998765444
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=193.21 Aligned_cols=110 Identities=32% Similarity=0.491 Sum_probs=94.0
Q ss_pred hCCCCcccccCC-CCCChHHHHHHHHHHHHcCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 017091 256 SLPCGYETLVDD-DLLSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR 331 (377)
Q Consensus 256 ~~~~~~~~~~~~-~~LSgGq~QRv~iAral~~~p---~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~ 331 (377)
....||-+.--+ .+|||||.|||=||.-|.+.. -++||||||.||-....+++++.|.++.. +|.|||+|.|+
T Consensus 808 dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd---~GnTViVIEHN 884 (935)
T COG0178 808 DVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD---KGNTVIVIEHN 884 (935)
T ss_pred HcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecc
Confidence 334454433222 579999999999999999887 99999999999999999999999999974 58999999999
Q ss_pred chhHHhcCeEEEE------eCCEEEEEcChHHHhhcCHHHHHH
Q 017091 332 LSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGRLYAKL 368 (377)
Q Consensus 332 l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~~~~~~~ 368 (377)
|+.++.||+|+-| ..|+|++.|+|+++.+....|.--
T Consensus 885 LdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~ 927 (935)
T COG0178 885 LDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGK 927 (935)
T ss_pred cceEeecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchhHH
Confidence 9999999999999 479999999999999876655443
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-21 Score=176.52 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=110.4
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE-EEccCCcCccccHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG-FVGQEPQLLQMDIKS 226 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~-~v~Q~~~l~~~tv~e 226 (377)
.+.+|++++.+++++++|+||||||||||+++++- ..+..++| |||.+...+ .+.+
T Consensus 18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~--~~~~ 74 (222)
T cd03285 18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADI--PIVD 74 (222)
T ss_pred eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEE--eccc
Confidence 68999999999999999999999999999999981 12234566 777654321 1122
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH--cCCCCEEEEeCc---CCCCC
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LRDPAILLLDEA---TSALD 301 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral--~~~p~illlDEP---ts~LD 301 (377)
.+. ...++.+.+ ...+|.|++|+..+++++ +.+|+++||||| |+++|
T Consensus 75 ~il----------------~~~~l~d~~------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD 126 (222)
T cd03285 75 CIL----------------ARVGASDSQ------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD 126 (222)
T ss_pred eeE----------------eeeccccch------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence 211 111111111 135899999999999999 899999999999 99999
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcC
Q 017091 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 302 ~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~ 354 (377)
+...... .++.+.+ ..|.++|++||+.+....||++..+++|++...++
T Consensus 127 ~~~~~~~--il~~l~~--~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 127 GFGLAWA--IAEYIAT--QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHH--HHHHHHh--cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 9877533 3344432 14789999999744445699999999999977654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.9e-21 Score=172.07 Aligned_cols=144 Identities=19% Similarity=0.246 Sum_probs=100.7
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKS 226 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~e 226 (377)
.+++|++|+. |++++|+||||||||||+|+|+|... +...|.++... .+++|...+| ..|+.|
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccchh
Confidence 5788887765 79999999999999999999988553 22356554321 3666755566 689999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHH
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~ 306 (377)
|+.++... ...+. ..+.+.++.+. + .+|+++|+||||+++|+....
T Consensus 79 ~l~~~~s~--~~~e~------~~~~~iL~~~~-----------~---------------~~p~llllDEp~~glD~~~~~ 124 (199)
T cd03283 79 DLRDGISY--FYAEL------RRLKEIVEKAK-----------K---------------GEPVLFLLDEIFKGTNSRERQ 124 (199)
T ss_pred ccccccCh--HHHHH------HHHHHHHHhcc-----------C---------------CCCeEEEEecccCCCCHHHHH
Confidence 99876321 11111 12334444322 1 799999999999999999887
Q ss_pred HHH-HHHHHhhccCCCCeEEEEEecCchhHHh---cCeEEEE
Q 017091 307 YVK-GVLHALRNDCKTKRTVIVIAHRLSTIKA---VDRIVVI 344 (377)
Q Consensus 307 ~i~-~~l~~l~~~~~~g~tvi~itH~l~~~~~---~d~v~~l 344 (377)
.+. ..++.+.+ .+.|+|++||+++.+.. .++|-.+
T Consensus 125 ~l~~~ll~~l~~---~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 125 AASAAVLKFLKN---KNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHH---CCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 765 46777753 37899999999998754 3455443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-20 Score=169.06 Aligned_cols=155 Identities=12% Similarity=0.097 Sum_probs=104.8
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC-CCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHh
Q 017091 151 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 229 (377)
Q Consensus 151 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl-~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~ 229 (377)
-..++++.+|++++|+||||||||||+++|++. +.+..|.... . .+..+++..|....+ ...+++.
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~----------~-~~~~i~~~dqi~~~~--~~~d~i~ 86 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP----------A-ESASIPLVDRIFTRI--GAEDSIS 86 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc----------c-cccccCCcCEEEEEe--cCccccc
Confidence 445566668999999999999999999999943 3233332110 0 012344433321111 1111110
Q ss_pred cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHH
Q 017091 230 YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309 (377)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~ 309 (377)
. + ...+|++++| +..+.+++.+|+++|+||||+++|+.....+.
T Consensus 87 ~-----------------------------~------~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 87 D-----------------------------G------RSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred C-----------------------------C------ceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 0 0 0235666655 66667888999999999999999999887775
Q ss_pred H-HHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHH
Q 017091 310 G-VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 310 ~-~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~ 357 (377)
. .++.+.+ .+.++|++||+.+.+..++++..++.|++...+...+
T Consensus 131 ~~ll~~l~~---~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 131 YAVLEHLLE---KGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHh---cCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCe
Confidence 5 4555543 3789999999998888899999999999988876543
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-19 Score=167.66 Aligned_cols=74 Identities=23% Similarity=0.343 Sum_probs=62.4
Q ss_pred CCChHHHHHHHHHHHHc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-c
Q 017091 269 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-V 338 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~---------~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~ 338 (377)
.+|+||||+++|||+|+ .+|+++|+||||++||+.....+.+.+.++ + .+++++|+...+.. |
T Consensus 183 ~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~------~-q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 183 FGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR------V-QTFVTTTDLADFDALW 255 (270)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC------C-CEEEEeCCchhccchh
Confidence 48999999999999985 799999999999999999999998888764 2 46667766666543 5
Q ss_pred ---CeEEEEeCCEE
Q 017091 339 ---DRIVVIDDGRI 349 (377)
Q Consensus 339 ---d~v~~l~~G~i 349 (377)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.7e-19 Score=188.34 Aligned_cols=106 Identities=31% Similarity=0.477 Sum_probs=92.0
Q ss_pred HHHhCCCCccc-ccCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEe
Q 017091 253 FILSLPCGYET-LVDDDLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 329 (377)
Q Consensus 253 ~~~~~~~~~~~-~~~~~~LSgGq~QRv~iAral~~~p--~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~it 329 (377)
+++.+..++.+ .....+|||||+|||+|||||..+| +++||||||++||+.....+.+.|+++++ .|.|||+|+
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~---~G~TVIvVe 548 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD---LGNTLIVVE 548 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh---CCCEEEEEe
Confidence 45555544332 3334689999999999999999997 99999999999999999999999999964 489999999
Q ss_pred cCchhHHhcCeEEEE------eCCEEEEEcChHHHhhc
Q 017091 330 HRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHK 361 (377)
Q Consensus 330 H~l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~ 361 (377)
||++.+..||+|++| ++|+|+..|+++++...
T Consensus 549 H~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 549 HDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred CCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 999998889999999 99999999999998654
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=186.20 Aligned_cols=105 Identities=30% Similarity=0.464 Sum_probs=90.6
Q ss_pred HHhCCCCccc-ccCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 017091 254 ILSLPCGYET-LVDDDLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 330 (377)
Q Consensus 254 ~~~~~~~~~~-~~~~~~LSgGq~QRv~iAral~~~p--~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH 330 (377)
+..+..++.+ .....+|||||+|||.|||||+.+| +++||||||+|||+.....+.+.|+++++ .|.|||+|+|
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~---~G~TVIvVeH 547 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD---LGNTVIVVEH 547 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh---CCCEEEEEEC
Confidence 4444444332 2234689999999999999999986 89999999999999999999999999964 4899999999
Q ss_pred CchhHHhcCeEEEE------eCCEEEEEcChHHHhhc
Q 017091 331 RLSTIKAVDRIVVI------DDGRIIEVGNHAELLHK 361 (377)
Q Consensus 331 ~l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~ 361 (377)
|++.+..||+|++| ++|+|+..|+++++...
T Consensus 548 d~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 548 DEETIRAADYVIDIGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred CHHHHhhCCEEEEecccccCCCCEEeeccCHHHHhcC
Confidence 99999889999999 99999999999998643
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-19 Score=174.81 Aligned_cols=203 Identities=19% Similarity=0.352 Sum_probs=133.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhh--CCCCCCCeEEECCEeCCCCCHHH---
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRW--- 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g--l~~p~~G~I~i~g~~i~~~~~~~--- 205 (377)
.|.++|.+.+-.++ ..+.|.|+.|-.|..+++|||||-||||||+.|+. +--|..=.+++..+.+..-+...
T Consensus 264 DIKiEnF~ISA~Gk---~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~t 340 (807)
T KOG0066|consen 264 DIKIENFDISAQGK---LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDT 340 (807)
T ss_pred cceeeeeeeecccc---eeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHH
Confidence 48899988887543 58999999999999999999999999999999984 33344445666666553221110
Q ss_pred -H---hcceEEEccCCcC---c---cccHHHHHh--------cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC
Q 017091 206 -L---REKIGFVGQEPQL---L---QMDIKSNIM--------YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 267 (377)
Q Consensus 206 -~---r~~i~~v~Q~~~l---~---~~tv~eni~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 267 (377)
+ .++..++-.+..| | ..|+.|-+. .|. .....+.++.+.-.++..-+...| .
T Consensus 341 vl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA--~sAEarARRILAGLGFskEMQ~rP--------t 410 (807)
T KOG0066|consen 341 VLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGA--DSAEARARRILAGLGFSKEMQERP--------T 410 (807)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcc--ccchhHHHHHHhhcCCChhHhcCC--------c
Confidence 0 1112222221111 0 112322221 110 000111111221122222222222 1
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC
Q 017091 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 346 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~ 346 (377)
..+|||-|-||+|||||..+|-+|.|||||+.||.....-+-+.|..+ .+|.++|+||-.++.. |..|+.|++
T Consensus 411 ~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW------kKTLLIVSHDQgFLD~VCtdIIHLD~ 484 (807)
T KOG0066|consen 411 TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW------KKTLLIVSHDQGFLDSVCTDIIHLDN 484 (807)
T ss_pred cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh------hheeEEEecccchHHHHHHHHhhhhh
Confidence 469999999999999999999999999999999998877666677666 4699999999999986 999999998
Q ss_pred CEEEEE
Q 017091 347 GRIIEV 352 (377)
Q Consensus 347 G~i~~~ 352 (377)
-++...
T Consensus 485 qkLhyY 490 (807)
T KOG0066|consen 485 QKLHYY 490 (807)
T ss_pred hhhhhh
Confidence 887543
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-18 Score=156.65 Aligned_cols=139 Identities=19% Similarity=0.218 Sum_probs=98.2
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEE-EccCCcCccccHH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF-VGQEPQLLQMDIK 225 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~-v~Q~~~l~~~tv~ 225 (377)
..+.+|++|++++|++++|+||||+||||++|+++++. +..++|+ ||-.. ...++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 36999999999999999999999999999999998874 2223442 22211 134666
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHH
Q 017091 226 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305 (377)
Q Consensus 226 eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~ 305 (377)
|+|...... .+.. ..+.+.+|+|++|+ ..+-+++.+|+++|+|||++|+|+...
T Consensus 73 d~I~~~~~~---~d~~----------------------~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~ 126 (204)
T cd03282 73 NRLLSRLSN---DDSM----------------------ERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADG 126 (204)
T ss_pred hheeEecCC---cccc----------------------chhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHH
Confidence 776432110 0000 00114589999975 555668899999999999999999765
Q ss_pred HHH-HHHHHHhhccCCCCeEEEEEecCchhHHh
Q 017091 306 HYV-KGVLHALRNDCKTKRTVIVIAHRLSTIKA 337 (377)
Q Consensus 306 ~~i-~~~l~~l~~~~~~g~tvi~itH~l~~~~~ 337 (377)
..+ ...++.+.+ .+.++|++||+.+.+..
T Consensus 127 ~~l~~~il~~l~~---~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 127 FAISLAILECLIK---KESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHHHHHHHHHHh---cCCEEEEECChHHHHHH
Confidence 544 445666653 37899999999998765
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-17 Score=159.18 Aligned_cols=182 Identities=23% Similarity=0.399 Sum_probs=132.6
Q ss_pred EEcCCCCCCCceeeeeEEEeCCc-----EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 017091 139 FHYPSRPTVPILNHVCLTIEANE-----VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 213 (377)
Q Consensus 139 ~~y~~~~~~~vL~~isl~i~~Ge-----~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 213 (377)
++|++. +.-+.+..|.|+.|+ ++..+|+||.||||++++++|.++|++|. ++..+ .|+|=
T Consensus 343 y~Yp~m--~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSyk 407 (592)
T KOG0063|consen 343 YSYPKM--KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYK 407 (592)
T ss_pred eccCcc--eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceecc
Confidence 446653 357889999999985 58899999999999999999999999761 22222 37777
Q ss_pred ccCCcC-ccccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 017091 214 GQEPQL-LQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 291 (377)
Q Consensus 214 ~Q~~~l-~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~il 291 (377)
||...- +.+||++-+.--.+ ......-+.+..+...++..+++-- .+|||||+|||++|.+|-..++++
T Consensus 408 pqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqev---------q~lSggelQRval~KOGGKpAdvY 478 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEV---------QGLSGGELQRVALALCLGKPADVY 478 (592)
T ss_pred ccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHh---------hcCCchhhHHHHHHHhcCCCCceE
Confidence 886543 56788776532111 0111222333444444444444322 469999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC
Q 017091 292 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 346 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~ 346 (377)
+.|||.+-||.+.+..--..++++-- ..++|-.+|.||+-...+ +|||++.+.
T Consensus 479 liDEpsAylDSeQRi~AskvikRfil--hakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 479 LIDEPSAYLDSEQRIIASKVIKRFIL--HAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred EecCchhhcChHHHHHHHHHHHHHHH--hccchhhhhhhHHHHHHhhcceeEEEec
Confidence 99999999999988776666766532 246799999999998876 999999863
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-17 Score=157.56 Aligned_cols=142 Identities=22% Similarity=0.312 Sum_probs=102.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC-HHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 239 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~ 239 (377)
..++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..++...++++||+......+|.||. + +
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~----~----k- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC----P----K- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc----h----H-
Confidence 578999999999999999999999999999999999997654 45666678899996532244454431 0 0
Q ss_pred HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 240 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
..| ...++|+ .+|+++|+|||++ .+.+...++.+.
T Consensus 183 -------------------------------~~~---~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~--- 217 (270)
T TIGR02858 183 -------------------------------AEG---MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALH--- 217 (270)
T ss_pred -------------------------------HHH---HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHh---
Confidence 001 1233344 5999999999974 233445555542
Q ss_pred CCCeEEEEEecCchh--H------------HhcCeEEEEeCCEEEEEcChHHHh
Q 017091 320 KTKRTVIVIAHRLST--I------------KAVDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 320 ~~g~tvi~itH~l~~--~------------~~~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
.|.|+|++||+.+. + ..+||+++|++|+ ..|++++++
T Consensus 218 -~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 218 -AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred -CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 48899999997665 3 2279999999886 667776654
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.2e-18 Score=154.28 Aligned_cols=155 Identities=17% Similarity=0.213 Sum_probs=101.4
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKS 226 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~e 226 (377)
.+.+|++++.++ ++++|+|||||||||++|++++..-.. . .|..+ +.. +..++++.| +| ..++.|
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~--~---~g~~v---p~~--~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA--Q---IGSFV---PAS--KAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh--c---cCCee---ccc--cceecceee---EeccCCchh
Confidence 588999999987 999999999999999999998754211 1 11111 111 245777765 33 455666
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH--cCCCCEEEEeCc---CCCCC
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LRDPAILLLDEA---TSALD 301 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral--~~~p~illlDEP---ts~LD 301 (377)
|+..+. |.=...+..+++++ +.+|+++||||| |+++|
T Consensus 85 ~ls~g~--------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD 126 (216)
T cd03284 85 DLAGGR--------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTSTYD 126 (216)
T ss_pred hhccCc--------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHH
Confidence 655431 11111222333333 579999999999 99999
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHH
Q 017091 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 302 ~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l 358 (377)
.... ....++.+.+. .+.++|++||+.+....+|++..+++|++...++.+++
T Consensus 127 ~~~~--~~~il~~l~~~--~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 127 GLSI--AWAIVEYLHEK--IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHHH--HHHHHHHHHhc--cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 8652 23344444321 36799999999876666888777788888776655554
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-18 Score=159.54 Aligned_cols=195 Identities=18% Similarity=0.216 Sum_probs=121.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeE--EECCEeCCCCCHHHHhcce---EEEccCCcCccccHHHHHh
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI--YIDGFPLTDLDIRWLREKI---GFVGQEPQLLQMDIKSNIM 229 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I--~i~g~~i~~~~~~~~r~~i---~~v~Q~~~l~~~tv~eni~ 229 (377)
+.+.+||.++|+||+|+|||||++.+.+......+++ ++-...-...+..++.+.+ -++.+-. .+....+.
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~----~~~~~~~~ 86 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFD----EPPERHVQ 86 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCC----CCHHHHHH
Confidence 5789999999999999999999999999887654433 2221111113344443333 1111100 01111110
Q ss_pred cCCCCCCCHHHHHHHHHHcC-----HHHHHHhCCCCcccccC--CCCCChHH--------HHHHHHHHHHcCCCCEEEEe
Q 017091 230 YGCPKDVKNEDIEWAAKQAY-----VHEFILSLPCGYETLVD--DDLLSGGQ--------KQRIAIARAILRDPAILLLD 294 (377)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~--~~~LSgGq--------~QRv~iAral~~~p~illlD 294 (377)
.. ... .+...... ..+ +-+-+.+++..+++..+ +..+|||+ +||+++||++.++++|.+|
T Consensus 87 ~~--~~~-~~~a~~~~-~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l- 161 (249)
T cd01128 87 VA--EMV-LEKAKRLV-EHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII- 161 (249)
T ss_pred HH--HHH-HHHHHHHH-HCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-
Confidence 00 000 00000000 001 01223445555555554 35689999 9999999999999999999
Q ss_pred CcCCCCCHHHHHH-HHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 017091 295 EATSALDSESEHY-VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 369 (377)
Q Consensus 295 EPts~LD~~~~~~-i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 369 (377)
||+.+|+.++.. ++ +.+++. .+.|.|++||++.....+|.|.+|+.|++ +++++..++.|..++
T Consensus 162 -~T~~~d~~~~~~~~i--~~~~~~---~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~~ 226 (249)
T cd01128 162 -ATALVDTGSRMDDVI--FEEFKG---TGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRMW 226 (249)
T ss_pred -eeheecCCCcccchH--HHHHhc---CCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHHH
Confidence 999999755543 43 444432 36799999999999999999999999997 566665555666554
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.1e-18 Score=136.01 Aligned_cols=77 Identities=22% Similarity=0.175 Sum_probs=70.2
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
..+|++++|++++|++++|+||||||||||++++. +|++.++|.++..++....++.++++||+ +|..|++|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 36999999999999999999999999999999986 89999999999888777777778888888 89999999
Q ss_pred HHhcC
Q 017091 227 NIMYG 231 (377)
Q Consensus 227 ni~~~ 231 (377)
||.+.
T Consensus 74 Ni~~~ 78 (107)
T cd00820 74 NIFLI 78 (107)
T ss_pred hceee
Confidence 99873
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=148.86 Aligned_cols=75 Identities=25% Similarity=0.395 Sum_probs=65.3
Q ss_pred CCChHHHHHHHHHHHHc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh--
Q 017091 269 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-- 337 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~---------~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-- 337 (377)
.+|.||+|+++||++++ .+|+|+|||||+++||+..+..+.+.+.++ +..++++||+.+.+..
T Consensus 273 ~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~------~~qv~it~~~~~~~~~~~ 346 (361)
T PRK00064 273 FGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL------GAQVFITTTDLEDLADLL 346 (361)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc------CCEEEEEcCChhhhhhhh
Confidence 49999999999999985 799999999999999999999998888754 3478999999877643
Q ss_pred -cCeEEEEeCCEE
Q 017091 338 -VDRIVVIDDGRI 349 (377)
Q Consensus 338 -~d~v~~l~~G~i 349 (377)
.++++.|++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 358999999987
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-15 Score=138.22 Aligned_cols=137 Identities=18% Similarity=0.199 Sum_probs=92.0
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh--hCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc--ccH
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ--MDI 224 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~--gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~--~tv 224 (377)
|=+|+++.=..+.+++|+||||+|||||+|.+. +++ +..|...... ...++|..|...-+. .++
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccCh
Confidence 445555532223799999999999999999998 434 5667654422 124777777542221 111
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHH
Q 017091 225 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304 (377)
Q Consensus 225 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~ 304 (377)
.+++ ..| .-+.||+++|++++.+|+++|+|||++|+|+..
T Consensus 86 ~~~~----------------------S~f------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~ 125 (213)
T cd03281 86 SSGQ----------------------SAF------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTED 125 (213)
T ss_pred hhcc----------------------chH------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHH
Confidence 1111 001 345699999999999999999999999999975
Q ss_pred H-HHHHHHHHHhhccCCCCeEEEEEecCchhHHh
Q 017091 305 E-HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 337 (377)
Q Consensus 305 ~-~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~ 337 (377)
. ..+...++.+.+....+.++|++||+++.+..
T Consensus 126 ~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 126 GAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 4 44456777775421123589999999998765
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-15 Score=158.93 Aligned_cols=147 Identities=20% Similarity=0.251 Sum_probs=99.4
Q ss_pred cEEEEEEEEEcCCCCCCCcee-----eeeEEEeCC-cEEEEEcCCCCcHHHHHHHHhhC-CCCCCCeEEECCEeCCCCCH
Q 017091 131 HVQFVNISFHYPSRPTVPILN-----HVCLTIEAN-EVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~-----~isl~i~~G-e~~~ivG~nGsGKSTLl~~l~gl-~~p~~G~I~i~g~~i~~~~~ 203 (377)
.+.++++.. |+++ .+|+++.++ ++++|+||||+|||||+|+++|. +.+..|-
T Consensus 295 ~i~l~~~rh--------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~------------- 353 (771)
T TIGR01069 295 KIILENARH--------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI------------- 353 (771)
T ss_pred CEEEccccC--------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC-------------
Confidence 466766643 3443 378889887 99999999999999999999987 3333331
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
+||..... ...+.+++... ..+++ .+.. + .+++|+|++|+..++++
T Consensus 354 --------~Vpa~~~~-~~~~~d~i~~~----i~~~~------------si~~---~------LStfS~~m~~~~~il~~ 399 (771)
T TIGR01069 354 --------PIPANEHS-EIPYFEEIFAD----IGDEQ------------SIEQ---N------LSTFSGHMKNISAILSK 399 (771)
T ss_pred --------CccCCccc-cccchhheeee----cChHh------------HHhh---h------hhHHHHHHHHHHHHHHh
Confidence 33333210 01112222110 01100 0000 0 14589999999999988
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHH-HHHHHHhhccCCCCeEEEEEecCchhHH
Q 017091 284 ILRDPAILLLDEATSALDSESEHYV-KGVLHALRNDCKTKRTVIVIAHRLSTIK 336 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i-~~~l~~l~~~~~~g~tvi~itH~l~~~~ 336 (377)
+ .+|+++|+|||++|+|+.....+ ..++..+.+ .|.++|++||+.+...
T Consensus 400 ~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~---~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 400 T-TENSLVLFDELGAGTDPDEGSALAISILEYLLK---QNAQVLITTHYKELKA 449 (771)
T ss_pred c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh---cCCEEEEECChHHHHH
Confidence 7 89999999999999999999888 456777653 4789999999987643
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-14 Score=143.75 Aligned_cols=180 Identities=21% Similarity=0.229 Sum_probs=118.5
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeC---CC-----CCHHHHhcceEEEccCCc
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL---TD-----LDIRWLREKIGFVGQEPQ 218 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i---~~-----~~~~~~r~~i~~v~Q~~~ 218 (377)
..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|++- .+ ++...+++.|.++.+...
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 4689999 99999999999999999999999999999999999999965443 32 233446677888875321
Q ss_pred CccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh-HHHHH-HHHHHHHcCCCCEEEEeCc
Q 017091 219 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG-GQKQR-IAIARAILRDPAILLLDEA 296 (377)
Q Consensus 219 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSg-Gq~QR-v~iAral~~~p~illlDEP 296 (377)
-. -.+...+....-+.++... .|.+..+--.+|+- -|-|| +++ .+.+|+ .
T Consensus 225 ~~-----------------~~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dsltr~A~A~rEisl---~~ge~P------~ 276 (438)
T PRK07721 225 PA-----------------LMRIKGAYTATAIAEYFRD--QGLNVMLMMDSVTRVAMAQREIGL---AVGEPP------T 276 (438)
T ss_pred CH-----------------HHHHHHHHHHHHHHHHHHH--CCCcEEEEEeChHHHHHHHHHHHH---hcCCCC------c
Confidence 10 0001111111111222221 12222221122221 11111 111 123454 5
Q ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCe-----EEEEEecCchhHHhcCeEEEEeCCEEEEEcChHH
Q 017091 297 TSALDSESEHYVKGVLHALRNDCKTKR-----TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 297 ts~LD~~~~~~i~~~l~~l~~~~~~g~-----tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~ 357 (377)
|+|+||.....+.+.++++.+. ..|. ||++.+||++. ..||++..+.+|+|+.+++..+
T Consensus 277 ~~G~dp~~~~~l~~ller~~~~-~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 277 TKGYTPSVFAILPKLLERTGTN-ASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred cccCCHHHHHHHHHHHHHhcCC-CCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 7999999999999999988532 2575 99999999995 5599999999999999987654
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-15 Score=138.88 Aligned_cols=72 Identities=26% Similarity=0.512 Sum_probs=56.8
Q ss_pred CCChHHHHHHHHHHHH----cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE
Q 017091 269 LLSGGQKQRIAIARAI----LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 344 (377)
Q Consensus 269 ~LSgGq~QRv~iAral----~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l 344 (377)
.||||||.+++||--| ..+++++|||||.++||+.....+.+.|+++. ++.-+|++||+...+..||+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~----~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELS----KQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHT----TTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccccccccccccccccc
Confidence 6999999999998655 46889999999999999999999999999884 346799999999999999987665
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.5e-16 Score=137.31 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=50.6
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHH-HHHHHhhccCCCCeEEEEEecCchhHHhcCe
Q 017091 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK-GVLHALRNDCKTKRTVIVIAHRLSTIKAVDR 340 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~-~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~ 340 (377)
+.+|+|++|...+++. +.+|+++|+|||++++|+.....+. ..++.+.+. .+.++|++||+++....+|+
T Consensus 60 s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~--~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 60 STFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEK--IGALTLFATHYHELTKLADE 130 (185)
T ss_pred cHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhc--CCCeEEEEecHHHHHHHhhc
Confidence 4578888774433332 3499999999999999999776664 455666431 37899999999976665663
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.6e-15 Score=165.15 Aligned_cols=122 Identities=21% Similarity=0.249 Sum_probs=99.3
Q ss_pred CccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC-CCCCChHHHH------HHHHHHHHcCCCCEE
Q 017091 219 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD-DDLLSGGQKQ------RIAIARAILRDPAIL 291 (377)
Q Consensus 219 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~LSgGq~Q------Rv~iAral~~~p~il 291 (377)
.|.+|+.|||.+ .+ +.+++ ..+++.++..+|+..+|.| ++.++ ...||||||| |++||||++.+|++|
T Consensus 1153 ~~~~~~~~~i~~-~~-~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RS-DADEN--VSASDKRRNYNYRVVMLKG-DTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred HcCccHHHHhhc-CC-CCChH--HHHHHHcCchHHHhccCCC-CeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence 478999999999 33 44443 4677778899999999988 77665 3689999999 999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhhccC--CCCeEEEEEecCchhHHh------cCeEEEEe
Q 017091 292 LLDEATSALDSESEHYVKGVLHALRNDC--KTKRTVIVIAHRLSTIKA------VDRIVVID 345 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~~~~--~~g~tvi~itH~l~~~~~------~d~v~~l~ 345 (377)
+|||||++||+.+...+.+.|..+.... ..|.|||+||||++++.. ||+.+-+.
T Consensus 1228 ~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1228 ALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLK 1289 (1311)
T ss_pred EeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeee
Confidence 9999999999999999999888764211 137899999999998753 46666554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.4e-14 Score=128.49 Aligned_cols=137 Identities=18% Similarity=0.206 Sum_probs=90.0
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhh-CCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK 225 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g-l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~ 225 (377)
.+.+|++|++.+|++++|+||||+||||+++++++ .+.+..|...+.. . ..++|..| +| .....
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~----------~~~~~~~~---i~~~~~~~ 84 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S----------ATLSIFDS---VLTRMGAS 84 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c----------eEEeccce---EEEEecCc
Confidence 58999999999999999999999999999999999 6778888765432 1 12444333 22 11122
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHH
Q 017091 226 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305 (377)
Q Consensus 226 eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~ 305 (377)
|++.-+. ..| ..|-+|++-+-.-+.+|+++|+|||.+|.|+...
T Consensus 85 d~~~~~~------------------StF------------------~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~ 128 (222)
T cd03287 85 DSIQHGM------------------STF------------------MVELSETSHILSNCTSRSLVILDELGRGTSTHDG 128 (222)
T ss_pred ccccccc------------------chH------------------HHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhH
Confidence 2221110 000 1122333322233568999999999888886655
Q ss_pred HHH-HHHHHHhhccCCCCeEEEEEecCchhHH
Q 017091 306 HYV-KGVLHALRNDCKTKRTVIVIAHRLSTIK 336 (377)
Q Consensus 306 ~~i-~~~l~~l~~~~~~g~tvi~itH~l~~~~ 336 (377)
..+ ...++.+.+. .+.++|++||+.+...
T Consensus 129 ~~i~~~il~~l~~~--~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 129 IAIAYATLHYLLEE--KKCLVLFVTHYPSLGE 158 (222)
T ss_pred HHHHHHHHHHHHhc--cCCeEEEEcccHHHHH
Confidence 553 4556666532 3789999999998754
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.6e-15 Score=133.29 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCcC-----CCCCHHHHHHHHHHHHHhh
Q 017091 273 GQKQRIAIARAILRDPAILLLDEAT-----SALDSESEHYVKGVLHALR 316 (377)
Q Consensus 273 Gq~QRv~iAral~~~p~illlDEPt-----s~LD~~~~~~i~~~l~~l~ 316 (377)
-|++++.|||+++.+|+++++|||| ++||+...+.+.+.+++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999999885
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-14 Score=138.16 Aligned_cols=173 Identities=25% Similarity=0.319 Sum_probs=111.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC----CCHHHH------------hc--ceEEEccCCc
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRWL------------RE--KIGFVGQEPQ 218 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~----~~~~~~------------r~--~i~~v~Q~~~ 218 (377)
-+||+..++||.||-||||-+++++|-.+|.-|.-. ++-+... ..-.++ +. +..||.|-|.
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHH
Confidence 357999999999999999999999999999877431 1111110 000000 00 0111111111
Q ss_pred CccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCC
Q 017091 219 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS 298 (377)
Q Consensus 219 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts 298 (377)
...++|.+++.--.. .....++++...+...+++ ....||||+-||.+||.+-+++.++.++|||.|
T Consensus 176 ~~k~~v~~~l~~~~~----r~~~~~~~~~~~L~~~~~r---------e~~~lsggelqrfaia~~~vq~advyMFDEpSs 242 (592)
T KOG0063|consen 176 AVKGTVGSLLDRKDE----RDNKEEVCDQLDLNNLLDR---------EVEQLSGGELQRFAIAMVCVQKADVYMFDEPSS 242 (592)
T ss_pred HHHHHHHHHHHHHhh----cccHHHHHHHHHHhhHHHh---------hhhhcccchhhhhhhhhhhhhhcceeEecCCcc
Confidence 112333333321100 0011122222222222221 125699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC
Q 017091 299 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 346 (377)
Q Consensus 299 ~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~ 346 (377)
.||.+.+-+-...|+.+.. .++=||+|.||++.+.. .|-|.++..
T Consensus 243 YLDVKQRLkaA~~IRsl~~---p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 243 YLDVKQRLKAAITIRSLIN---PDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred cchHHHhhhHHHHHHHhhC---CCCeEEEEEeechHHHhhhcceeEEec
Confidence 9999998888888888753 46789999999999987 898888863
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.9e-14 Score=145.28 Aligned_cols=76 Identities=18% Similarity=0.330 Sum_probs=70.0
Q ss_pred CCChHHHHHHHHHHHHcCC----CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE
Q 017091 269 LLSGGQKQRIAIARAILRD----PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 344 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~----p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l 344 (377)
.|||||+||++|||+++.. |+++||||||+|||+.+...+.+.|+++. .+.+||+|||++..+..||++++|
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~----~~~~vi~iTH~~~~~~~ad~~~~l 515 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS----ERHQVLCVTHLPQVAAHADAHFKV 515 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh----cCCEEEEEEChHHHHHhcCeEEEE
Confidence 5899999999999999985 69999999999999999999999999984 368999999999988889999999
Q ss_pred eCCE
Q 017091 345 DDGR 348 (377)
Q Consensus 345 ~~G~ 348 (377)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 9864
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-13 Score=147.93 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=59.7
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHH-HHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEE
Q 017091 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG-VLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVI 344 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~-~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l 344 (377)
+++|+|++|++.|++++ .+|+++|+|||++|+||.....+.. ++..+.+ .|.++|++||+.+.... +++..++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~---~~~~vIitTH~~el~~~~~~~~~v~ 463 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK---RGAKIIATTHYKELKALMYNREGVE 463 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH---CCCEEEEECChHHHHHHHhcCCCeE
Confidence 45899999999999999 8999999999999999998887754 5566643 47899999999888765 5554433
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-13 Score=140.46 Aligned_cols=76 Identities=20% Similarity=0.338 Sum_probs=69.3
Q ss_pred CCChHHHHHHHHHHHHcC----CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE
Q 017091 269 LLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 344 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~----~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l 344 (377)
.|||||+||++||++++. +|+++|||||++|||+.+...+.+.|+++. .+.+||+|||++..+..||+++++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~----~~~qvi~iTH~~~~~~~ad~~~~v 505 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG----ESTQVMCVTHLPQVAGCGHQHFFV 505 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHHHHhCCEEEEE
Confidence 389999999999999997 689999999999999999999999999984 357999999999988889999999
Q ss_pred eCCE
Q 017091 345 DDGR 348 (377)
Q Consensus 345 ~~G~ 348 (377)
.++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8753
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-13 Score=142.95 Aligned_cols=77 Identities=32% Similarity=0.495 Sum_probs=68.6
Q ss_pred CCCChHHHHHHHHHHHHc----------CCCCEEEEeCcC-CCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH
Q 017091 268 DLLSGGQKQRIAIARAIL----------RDPAILLLDEAT-SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 336 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~----------~~p~illlDEPt-s~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~ 336 (377)
..||||||||++|||||+ .+|+++|||||| ++||+.+...+.+.|.++ .|.|||+|||+++...
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-----~~~~iiiish~~~~~~ 541 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-----KDTNVFVISHKDHDPQ 541 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-----CCCeEEEEECchhchh
Confidence 469999999999999987 599999999998 789999999999999887 2679999999988777
Q ss_pred hcCeEEEEeC-CEE
Q 017091 337 AVDRIVVIDD-GRI 349 (377)
Q Consensus 337 ~~d~v~~l~~-G~i 349 (377)
.||++++|++ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 7999999986 543
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.6e-13 Score=136.71 Aligned_cols=111 Identities=34% Similarity=0.501 Sum_probs=97.5
Q ss_pred HHHHhCCCCcccccCC-CCCChHHHHHHHHHHHHcCC--CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEE
Q 017091 252 EFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRD--PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVI 328 (377)
Q Consensus 252 ~~~~~~~~~~~~~~~~-~~LSgGq~QRv~iAral~~~--p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~i 328 (377)
.|+.....+|.|.-+. .+|||||.||+.||.-+-.+ -=+++||||+.||-+..-+++++.|++++. .|.|+|+|
T Consensus 463 ~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRD---lGNTviVV 539 (935)
T COG0178 463 GFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD---LGNTVIVV 539 (935)
T ss_pred HHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHh---cCCeEEEE
Confidence 4566777888887664 68999999999999999765 468899999999999999999999999975 58999999
Q ss_pred ecCchhHHhcCeEEEE------eCCEEEEEcChHHHhhcCHHH
Q 017091 329 AHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGRLY 365 (377)
Q Consensus 329 tH~l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~~~~ 365 (377)
.||.+++..||+|+-| +.|+|++.|++++++++....
T Consensus 540 EHDedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~Sl 582 (935)
T COG0178 540 EHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPESL 582 (935)
T ss_pred ecCHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcch
Confidence 9999999999999998 579999999999999886433
|
|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.8e-12 Score=123.95 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=59.4
Q ss_pred CChHHHHHHHHHHHHc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCe
Q 017091 270 LSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDR 340 (377)
Q Consensus 270 LSgGq~QRv~iAral~---------~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~ 340 (377)
+|+||++++++|+.|+ .+|+++|||||+|.||+.....+.+.|... ..++|..| +.-..+|+
T Consensus 264 ~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~------~q~~it~t---~~~~~~~~ 334 (349)
T PRK14079 264 ASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL------PQAIVAGT---EAPPGAAL 334 (349)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC------CcEEEEcC---CCCCCCce
Confidence 8999999999999998 899999999999999999999998887543 12333333 23334899
Q ss_pred EEEEeCCEEEEE
Q 017091 341 IVVIDDGRIIEV 352 (377)
Q Consensus 341 v~~l~~G~i~~~ 352 (377)
++.+++|++...
T Consensus 335 ~~~~~~~~~~~~ 346 (349)
T PRK14079 335 TLRIEAGVFTPE 346 (349)
T ss_pred EEEEeccEecCC
Confidence 999999987543
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.5e-12 Score=117.84 Aligned_cols=157 Identities=13% Similarity=0.239 Sum_probs=92.4
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHH-HHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF-VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTL-l~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+.++++.+.+++ .+++|+++.|+|+|||||||| ++++.++.++....+++.... ++.++
T Consensus 8 ~~~~~ld~~l~g------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~----~~~~~---- 67 (230)
T PRK08533 8 LSRDELHKRLGG------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL----TTTEF---- 67 (230)
T ss_pred EEEeeeehhhCC------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC----CHHHH----
Confidence 567777776653 278999999999999999999 699998876543333333211 11111
Q ss_pred EEEccCCcCccccHHHHH-hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC-CCCCChHHHHHHHHHHHHc---
Q 017091 211 GFVGQEPQLLQMDIKSNI-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD-DDLLSGGQKQRIAIARAIL--- 285 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~LSgGq~QRv~iAral~--- 285 (377)
.++. .++. + ++++... + .+ .... ...+|+++.++-.+++.+-
T Consensus 68 --------------~~~~~~~g~--~--------------~~~~~~~-~-~l-~~~~~~~~~~~~~~~~~~l~~il~~~~ 114 (230)
T PRK08533 68 --------------IKQMMSLGY--D--------------INKKLIS-G-KL-LYIPVYPLLSGNSEKRKFLKKLMNTRR 114 (230)
T ss_pred --------------HHHHHHhCC--c--------------hHHHhhc-C-cE-EEEEecccccChHHHHHHHHHHHHHHH
Confidence 1111 1110 0 0000000 0 00 0000 0125666655555444443
Q ss_pred -CCCCEEEEeCcCCCC----CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh--------HHh-cCeEEEEe
Q 017091 286 -RDPAILLLDEATSAL----DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--------IKA-VDRIVVID 345 (377)
Q Consensus 286 -~~p~illlDEPts~L----D~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~--------~~~-~d~v~~l~ 345 (377)
.+|+++++||||+++ |+...+.+.+.++.+++ .|.|++ +||+... +.. ||-|+.|+
T Consensus 115 ~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~---~g~tvi-~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 115 FYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS---LNKVII-LTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred hcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh---CCCEEE-EEecccccccccceeEEEeeeEEEEEE
Confidence 369999999999999 77777888888888854 366555 5666543 233 68888776
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.2e-13 Score=117.99 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=61.4
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeC--cCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDE--ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDE--Pts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~ 346 (377)
.+||+++-++.+++..+.+|+++++|| |+..+|+.. .+.+.++.+ .+.++|+++|+-.....+|+|..+.+
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~----~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~ 150 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKF----VKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPG 150 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHH----HHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCC
Confidence 489999999999999999999999999 555556544 444444432 37899999999544456999999999
Q ss_pred CEEEEE
Q 017091 347 GRIIEV 352 (377)
Q Consensus 347 G~i~~~ 352 (377)
|+|.+.
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 999876
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-12 Score=144.47 Aligned_cols=77 Identities=26% Similarity=0.338 Sum_probs=70.8
Q ss_pred CCCChHHHHHHHHHHHHcC----------CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh
Q 017091 268 DLLSGGQKQRIAIARAILR----------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 337 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~----------~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~ 337 (377)
..|||||++||+||+||+. +|++||+||||++||+.+...+++.|..+.. .|++|++|||+++....
T Consensus 949 ~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~---~g~~i~iisH~~~~~~~ 1025 (1042)
T TIGR00618 949 ATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE---GSKMIGIISHVPEFRER 1025 (1042)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCcHHHHHh
Confidence 5799999999999999986 7999999999999999999999999999864 48899999999999876
Q ss_pred -cCeEEEEeCC
Q 017091 338 -VDRIVVIDDG 347 (377)
Q Consensus 338 -~d~v~~l~~G 347 (377)
+|+|.|++.|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 8999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-12 Score=123.61 Aligned_cols=145 Identities=16% Similarity=0.215 Sum_probs=99.4
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCC
Q 017091 153 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 232 (377)
Q Consensus 153 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~ 232 (377)
+++.+++|+.++|+||+|||||||+++|+++++|..|.+.+.+ ..++.... +..+.++.+... + +
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~-~~~~~l~~~~~~-------~----~- 201 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPH-PNYVHLFYSKGG-------Q----G- 201 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCC-CCEEEEEecCCC-------C----C-
Confidence 5577889999999999999999999999999999999888853 22222111 122222221100 0 0
Q ss_pred CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHH
Q 017091 233 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 312 (377)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l 312 (377)
. ...| ..-.++.+|-.+|+++++|||.+ .++.+.+
T Consensus 202 ~----------------------------------~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l 236 (308)
T TIGR02788 202 L----------------------------------AKVT----PKDLLQSCLRMRPDRIILGELRG-------DEAFDFI 236 (308)
T ss_pred c----------------------------------CccC----HHHHHHHHhcCCCCeEEEeccCC-------HHHHHHH
Confidence 0 0011 11134567788999999999996 2345666
Q ss_pred HHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhh
Q 017091 313 HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 313 ~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
+.+.. .+.+++.++|..+.....||+..|..|++...|.+.+.+.
T Consensus 237 ~a~~~---g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 237 RAVNT---GHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred HHHhc---CCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHHH
Confidence 66542 2346799999999766799999999999998888887763
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-12 Score=139.10 Aligned_cols=76 Identities=25% Similarity=0.409 Sum_probs=66.6
Q ss_pred CCCChHHHH------HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeE
Q 017091 268 DLLSGGQKQ------RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 268 ~~LSgGq~Q------Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
..|||||+| |++|||+++.+|+++|+||||++||+.....+.+.|..+.. .+.+||+|||+++....||++
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~---~~~~iiiith~~~~~~~~d~~ 863 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR---KIPQVIIVSHDEELKDAADYV 863 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHhCCeE
Confidence 469999999 56666788999999999999999999999999999988753 357999999999877779999
Q ss_pred EEEeC
Q 017091 342 VVIDD 346 (377)
Q Consensus 342 ~~l~~ 346 (377)
++|+.
T Consensus 864 ~~l~~ 868 (880)
T PRK03918 864 IRVSL 868 (880)
T ss_pred EEEEe
Confidence 99983
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.4e-12 Score=114.19 Aligned_cols=138 Identities=16% Similarity=0.181 Sum_probs=88.4
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC-CCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK 225 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~ 225 (377)
.+-+|++|+.++|++++|+||||+||||+++.+.+..-.. .|- .+ +.+ ...++++. .+| .....
T Consensus 18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~v---pa~--~~~i~~~~---~i~~~~~~~ 83 (218)
T cd03286 18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DV---PAK--SMRLSLVD---RIFTRIGAR 83 (218)
T ss_pred eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------cc---Ccc--ccEecccc---EEEEecCcc
Confidence 6899999999999999999999999999999998764221 121 11 000 11122221 122 22333
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHH
Q 017091 226 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305 (377)
Q Consensus 226 eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~ 305 (377)
|++..+.. + + ..|.+++.-.-..+.+|+++|+|||++|+|+...
T Consensus 84 d~~~~~~S---t--------------------------------F-~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg 127 (218)
T cd03286 84 DDIMKGES---T--------------------------------F-MVELSETANILRHATPDSLVILDELGRGTSTHDG 127 (218)
T ss_pred cccccCcc---h--------------------------------H-HHHHHHHHHHHHhCCCCeEEEEecccCCCCchHH
Confidence 44332210 0 0 0122333222333468999999999999999988
Q ss_pred HHHHHH-HHHhhccCCCCeEEEEEecCchhHHh
Q 017091 306 HYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKA 337 (377)
Q Consensus 306 ~~i~~~-l~~l~~~~~~g~tvi~itH~l~~~~~ 337 (377)
..+... ++.+.+. .+.++|++||+++.+..
T Consensus 128 ~~la~ail~~L~~~--~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 128 YAIAHAVLEYLVKK--VKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHHHHHHh--cCCcEEEEeccHHHHHH
Confidence 888777 5666531 37899999999998754
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.7e-12 Score=137.39 Aligned_cols=78 Identities=28% Similarity=0.441 Sum_probs=66.9
Q ss_pred CCCCChHHHHHHHH------HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCC-eEEEEEecCchhHHhcC
Q 017091 267 DDLLSGGQKQRIAI------ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK-RTVIVIAHRLSTIKAVD 339 (377)
Q Consensus 267 ~~~LSgGq~QRv~i------Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g-~tvi~itH~l~~~~~~d 339 (377)
...|||||++|++| ||+++.+|++++|||||++||+.....+.+++...... ..+ .|+|+||||++.+..||
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~-~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKD-SSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEECchHHHHhcC
Confidence 35799999999975 59999999999999999999999999999988754322 123 48999999999888899
Q ss_pred eEEEEe
Q 017091 340 RIVVID 345 (377)
Q Consensus 340 ~v~~l~ 345 (377)
+++.+.
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999997
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-12 Score=128.70 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=56.2
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC-eEEECCEeCCCCCHHHHhcceEEEccCC
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEP 217 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 217 (377)
.+|++|||++++||+++|+|||||||||||+ +|+.+|++| +|.++|.++...+..++.. .-+|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~-LR~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMET-LDEIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHH-HHHHHHhh
Confidence 5899999999999999999999999999999 788889888 7999999998765443221 11888864
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.2e-12 Score=116.27 Aligned_cols=64 Identities=25% Similarity=0.383 Sum_probs=52.7
Q ss_pred CCChHHHHHHHHHHHHcCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH
Q 017091 269 LLSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p---~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
.+|.|++|.+.++.++...+ .++++|||-++|+|..++.+.+.|.+..+ .+.-+|++||.+..+
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~---~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK---KNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG---GSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc---cCCEEEEeCccchhc
Confidence 47999999999998888766 89999999999999999999999988753 267899999998765
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-11 Score=106.61 Aligned_cols=75 Identities=13% Similarity=0.169 Sum_probs=61.0
Q ss_pred CCCChHHHH------HHHHHHHHcCCCCEEEEeCcCCCCC---HHHHHHHHHHHHHhhccCCCCeEEEEEecCchh----
Q 017091 268 DLLSGGQKQ------RIAIARAILRDPAILLLDEATSALD---SESEHYVKGVLHALRNDCKTKRTVIVIAHRLST---- 334 (377)
Q Consensus 268 ~~LSgGq~Q------Rv~iAral~~~p~illlDEPts~LD---~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~---- 334 (377)
..+|+|++| +...+.+...+|+++++|||++.+| +.....+.+.++.+++ .|.|+|+++|+...
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~---~g~tvi~v~~~~~~~~~~ 146 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR---FGVTTLLTSEQSGLEGTG 146 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH---CCCEEEEEeccccCCCcc
Confidence 468999998 5555555667999999999999999 7777888888888764 48899999998764
Q ss_pred -----HHh-cCeEEEEe
Q 017091 335 -----IKA-VDRIVVID 345 (377)
Q Consensus 335 -----~~~-~d~v~~l~ 345 (377)
+.. ||.|+.|+
T Consensus 147 ~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 147 FGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cCcCceeEeeeEEEEEE
Confidence 454 89999997
|
A related protein is found in archaea. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-10 Score=101.42 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=64.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 347 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G 347 (377)
..|.||-=---+.+.+- +.-++|||||-|+|.|.-+-.++..|+++.+ .|.-+||+||.+=.+.. --+|+-++.+
T Consensus 129 ~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~---sGaQ~IiATHSPiLlAiP~A~I~~~~~~ 204 (233)
T COG3910 129 HMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLAD---SGAQIIIATHSPILLAIPGAEIYEISES 204 (233)
T ss_pred hhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHh---cCCeEEEEecChhheeCCCcEEEEEecC
Confidence 47999977666667654 5689999999999999999999999999865 47889999999888765 6789988877
Q ss_pred EEE
Q 017091 348 RII 350 (377)
Q Consensus 348 ~i~ 350 (377)
-+.
T Consensus 205 g~~ 207 (233)
T COG3910 205 GIE 207 (233)
T ss_pred Ccc
Confidence 643
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.4e-11 Score=119.03 Aligned_cols=169 Identities=17% Similarity=0.163 Sum_probs=116.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++-++++..|..+ ..+++++ |.+.+|+.++|+|+||+|||||+++|+|..+|+.|.|.+.|+.-
T Consensus 130 ~~~r~~i~~~l~TG--iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg------------ 194 (432)
T PRK06793 130 AFEREEITDVFETG--IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG------------ 194 (432)
T ss_pred chheechhhccCCC--CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc------------
Confidence 36777788778643 4688885 99999999999999999999999999999999988887766542
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc-----
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL----- 285 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~----- 285 (377)
.++.|.+..- +...++..- --.....+-|.|+|+|++.+.+.+
T Consensus 195 -----------~ev~e~~~~~-------------l~~~gl~~t--------vvv~~tsd~s~~~r~ra~~~a~~iAEyfr 242 (432)
T PRK06793 195 -----------REVKDFIRKE-------------LGEEGMRKS--------VVVVATSDESHLMQLRAAKLATSIAEYFR 242 (432)
T ss_pred -----------ccHHHHHHHH-------------hhhccccee--------EEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1223322210 000000000 000112457999999999999988
Q ss_pred --CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcC
Q 017091 286 --RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 286 --~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~ 354 (377)
.++-++++|+||...|+. +++-..+.+.- ..|.+..+.||-...++++.+ .++|.|....+
T Consensus 243 ~~G~~VLlilDslTr~a~A~--reisl~~~e~p---~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 243 DQGNNVLLMMDSVTRFADAR--RSVDIAVKELP---IGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HcCCcEEEEecchHHHHHHH--HHHHHHhcCCC---CCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 789999999999999996 44444555442 247888888885445555544 36888865543
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.9e-11 Score=132.73 Aligned_cols=77 Identities=30% Similarity=0.292 Sum_probs=67.8
Q ss_pred CCCCChHHHHHHHHHHHHcC--------CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-
Q 017091 267 DDLLSGGQKQRIAIARAILR--------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA- 337 (377)
Q Consensus 267 ~~~LSgGq~QRv~iAral~~--------~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~- 337 (377)
...|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+++ .|+||++|||.......
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~---~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA---SGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---CCCEEEEEecHHHHHHhc
Confidence 46799999999999999996 8999999999999999999999999999964 48999999997777766
Q ss_pred cCeEEEEeC
Q 017091 338 VDRIVVIDD 346 (377)
Q Consensus 338 ~d~v~~l~~ 346 (377)
..+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 567776654
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=99.21 E-value=2e-11 Score=136.78 Aligned_cols=74 Identities=27% Similarity=0.446 Sum_probs=65.8
Q ss_pred CCCChHHHHHHHHHHHH----cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEE
Q 017091 268 DLLSGGQKQRIAIARAI----LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 343 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral----~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~ 343 (377)
..|||||+||++||+++ +.+|+++||||||++||+.+...+.++|..+.+ +.++|+|||+++.+..||+++.
T Consensus 1088 ~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~----~~~~i~~sh~~~~~~~~d~~~~ 1163 (1179)
T TIGR02168 1088 SLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK----NTQFIVITHNKGTMEVADQLYG 1163 (1179)
T ss_pred cccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc----CCEEEEEEcChhHHHHhhhHee
Confidence 46999999999999998 477899999999999999999999999998842 4689999999998878999876
Q ss_pred Ee
Q 017091 344 ID 345 (377)
Q Consensus 344 l~ 345 (377)
+.
T Consensus 1164 ~~ 1165 (1179)
T TIGR02168 1164 VT 1165 (1179)
T ss_pred ee
Confidence 54
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.7e-11 Score=126.48 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=59.5
Q ss_pred HcCCCCEEEEeCcCCCC-CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH----------hcCeEEEEeCCEEEEE
Q 017091 284 ILRDPAILLLDEATSAL-DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK----------AVDRIVVIDDGRIIEV 352 (377)
Q Consensus 284 l~~~p~illlDEPts~L-D~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~----------~~d~v~~l~~G~i~~~ 352 (377)
+..+|+++++|||+.+| |+...+.+.+.++.+++ .|.+++++||+++.+. .|+++++|.+|++...
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK---~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~ 725 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK---ANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREP 725 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCcccccc
Confidence 36799999999999999 69999999999998864 4789999999998763 5999999999998766
Q ss_pred cCh
Q 017091 353 GNH 355 (377)
Q Consensus 353 g~~ 355 (377)
+..
T Consensus 726 ~~~ 728 (818)
T PRK13830 726 GTR 728 (818)
T ss_pred chH
Confidence 643
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=99.65 Aligned_cols=129 Identities=17% Similarity=0.101 Sum_probs=77.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
+++|.||||+||||+++.+++...+..|.+.+.+.+... ...+ ++.... .
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~~~------------------~~~~~~-~-------- 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EELT------------------ERLIGE-S-------- 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HHHH------------------HHHhhh-h--------
Confidence 368999999999999999999887766666554432211 0000 000000 0
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccC-CCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCC----------CCHHHHHHHHH
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVD-DDLLSGGQKQRIAIARAILRDPAILLLDEATSA----------LDSESEHYVKG 310 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~-~~~LSgGq~QRv~iAral~~~p~illlDEPts~----------LD~~~~~~i~~ 310 (377)
.... ......... ....+.++.++++.+++...+|+++++|||++- .|....+.+.+
T Consensus 51 -----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (165)
T cd01120 51 -----LKGA-------LDNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRE 118 (165)
T ss_pred -----hccc-------cccEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 0000 000000000 122456666788899999999999999999954 44454555555
Q ss_pred HHHHhhccCCCCeEEEEEecCchhH
Q 017091 311 VLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 311 ~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
++...++ .+.|+|+++|.....
T Consensus 119 l~~~~~~---~~~~vv~~~~~~~~~ 140 (165)
T cd01120 119 LLERARK---GGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHhc---CCceEEEEEecCCcc
Confidence 5555432 488999999977543
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-10 Score=125.72 Aligned_cols=77 Identities=30% Similarity=0.491 Sum_probs=67.0
Q ss_pred CCCChHHHH------HHHHHHHHcCC-----C-CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCC-eEEEEEecCchh
Q 017091 268 DLLSGGQKQ------RIAIARAILRD-----P-AILLLDEATSALDSESEHYVKGVLHALRNDCKTK-RTVIVIAHRLST 334 (377)
Q Consensus 268 ~~LSgGq~Q------Rv~iAral~~~-----p-~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g-~tvi~itH~l~~ 334 (377)
..||||||| |+++|++++.+ | +++|+||||++||+.....+.+.|..+.. .| .+||+||||++.
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~---~~~~qviiish~~~~ 856 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRR---LGVEQIVVVSHDDEL 856 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHh---cCCCeEEEEECChHH
Confidence 479999999 99999999864 3 67999999999999999999999998853 24 479999999999
Q ss_pred HHhcCeEEEEeCC
Q 017091 335 IKAVDRIVVIDDG 347 (377)
Q Consensus 335 ~~~~d~v~~l~~G 347 (377)
+..||+++.|...
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 9889999999743
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.2e-10 Score=103.55 Aligned_cols=74 Identities=11% Similarity=0.161 Sum_probs=53.5
Q ss_pred CCChHHHHHHHHHHHHcC--CCCEEEEeCcCCCCC---HHHHHHHHHHHHHhhccCCCCeEEEEEecCchh-------HH
Q 017091 269 LLSGGQKQRIAIARAILR--DPAILLLDEATSALD---SESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-------IK 336 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~--~p~illlDEPts~LD---~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~-------~~ 336 (377)
..|.++.+.+..++.++. +|+++++||||+.+| ......+.+.++.+++ .|.|+++++|+... +.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~---~g~tvllt~~~~~~~~~~~~~~~ 176 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD---LGKTILITLHPYAFSEELLSRIR 176 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCcCCHHHHHHHH
Confidence 357788999999999997 999999999996544 4444444444554443 47899999997654 33
Q ss_pred h-cCeEEEEe
Q 017091 337 A-VDRIVVID 345 (377)
Q Consensus 337 ~-~d~v~~l~ 345 (377)
. +|-++.|+
T Consensus 177 ~l~DgvI~L~ 186 (234)
T PRK06067 177 SICDVYLKLR 186 (234)
T ss_pred hheEEEEEEE
Confidence 3 67777776
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-10 Score=129.31 Aligned_cols=75 Identities=21% Similarity=0.271 Sum_probs=66.8
Q ss_pred CCCChHHHHHHHHHHHHcC----CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEE
Q 017091 268 DLLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 343 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~----~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~ 343 (377)
..||||||++++||++|+. +||++|||||+++||+.+...+.+.|.++. .+.++|+|||+...+..||+++.
T Consensus 1073 ~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~----~~~~~i~~t~~~~~~~~~d~~~~ 1148 (1164)
T TIGR02169 1073 EAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKA----GEAQFIVVSLRSPMIEYADRAIG 1148 (1164)
T ss_pred hhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhc----CCCeEEEEECcHHHHHhcceeEe
Confidence 3699999999999999984 789999999999999999999999998874 34689999999988888999987
Q ss_pred EeC
Q 017091 344 IDD 346 (377)
Q Consensus 344 l~~ 346 (377)
+..
T Consensus 1149 ~~~ 1151 (1164)
T TIGR02169 1149 VTM 1151 (1164)
T ss_pred EEE
Confidence 753
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.8e-10 Score=101.92 Aligned_cols=118 Identities=27% Similarity=0.385 Sum_probs=73.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC-CCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
++.|+||+||||||+++.|++.+++. .|.|.....++. +.. ....+++.|.. .+. +
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~---~~~~~~i~q~~------------vg~--~----- 59 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVH---ESKRSLINQRE------------VGL--D----- 59 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-ccc---cCccceeeecc------------cCC--C-----
Confidence 68999999999999999999888644 567665444331 100 00111222210 000 0
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCC
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 320 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~ 320 (377)
+ ..++. +++++|..+|+++++|||. |+++...+ ++.. .
T Consensus 60 -----------------~---------~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~---l~~a----~ 97 (198)
T cd01131 60 -----------------T---------LSFEN------ALKAALRQDPDVILVGEMR---DLETIRLA---LTAA----E 97 (198)
T ss_pred -----------------c---------cCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHH---HHHH----H
Confidence 0 00111 4779999999999999996 66543333 3322 2
Q ss_pred CCeEEEEEecCchhHHhcCeEEEE
Q 017091 321 TKRTVIVIAHRLSTIKAVDRIVVI 344 (377)
Q Consensus 321 ~g~tvi~itH~l~~~~~~d~v~~l 344 (377)
.|..++.++|..+.....||++.|
T Consensus 98 ~G~~v~~t~Ha~~~~~~~~Rl~~l 121 (198)
T cd01131 98 TGHLVMSTLHTNSAAKTIDRIIDV 121 (198)
T ss_pred cCCEEEEEecCCcHHHHHhHHHhh
Confidence 478899999998876656776655
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=7e-10 Score=110.69 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=70.0
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEEC---CEeCCCCCHHH-
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID---GFPLTDLDIRW- 205 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~---g~~i~~~~~~~- 205 (377)
..++.++++..|..+ ..+++.++ +|.+||+++|+||||||||||+++|+++.+|+.|.|.+. |.++..+....
T Consensus 138 ~~~~r~~v~~~l~TG--i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 138 PAMTRARVETGLRTG--VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCeEeecceEEcCCC--cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 358999999999753 46899996 999999999999999999999999999999999999885 45555443222
Q ss_pred ---HhcceEEEccCC
Q 017091 206 ---LREKIGFVGQEP 217 (377)
Q Consensus 206 ---~r~~i~~v~Q~~ 217 (377)
+++.|++++|..
T Consensus 215 ~~~r~rtI~vV~qsd 229 (450)
T PRK06002 215 ADNLKKAVAVVATSD 229 (450)
T ss_pred HHhhCCeEEEEEcCC
Confidence 345799999965
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.7e-08 Score=81.55 Aligned_cols=119 Identities=35% Similarity=0.444 Sum_probs=78.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCC-CeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK 237 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~-G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 237 (377)
++..+.|+||+||||||+++.|+..+.... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 367899999999999999999999887554 3444444332211111000
Q ss_pred HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHH-----H
Q 017091 238 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV-----L 312 (377)
Q Consensus 238 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~-----l 312 (377)
...... ......+++..+..+++|-..+|+++++||+..-.+.......... .
T Consensus 51 -------------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~ 108 (148)
T smart00382 51 -------------LIIVGG---------KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLL 108 (148)
T ss_pred -------------hhhhhc---------cCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHH
Confidence 000000 0023678888888888988888999999999999999877655431 1
Q ss_pred HHhhccCCCCeEEEEEecC
Q 017091 313 HALRNDCKTKRTVIVIAHR 331 (377)
Q Consensus 313 ~~l~~~~~~g~tvi~itH~ 331 (377)
..... ..+..+|+++|.
T Consensus 109 ~~~~~--~~~~~~i~~~~~ 125 (148)
T smart00382 109 LLLKS--EKNLTVILTTND 125 (148)
T ss_pred HHHHh--cCCCEEEEEeCC
Confidence 11111 246788888884
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-10 Score=118.42 Aligned_cols=157 Identities=11% Similarity=0.148 Sum_probs=98.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHH--hhCCCCCCCeEEECCEeCCCCCHHHHh---cceEEEccCCcCccccHHHHHhc
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLL--LRLYEPSDGQIYIDGFPLTDLDIRWLR---EKIGFVGQEPQLLQMDIKSNIMY 230 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l--~gl~~p~~G~I~i~g~~i~~~~~~~~r---~~i~~v~Q~~~l~~~tv~eni~~ 230 (377)
-+++|..+.|.||+|||||||..-+ .|..++.+.-+++.... ++.+++ +.+||-.++..- . +++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE----~~~~l~~~~~~~G~~~~~~~~-~----g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE----SPQDIIKNARSFGWDLQKLVD-E----GKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec----CHHHHHHHHHHcCCCHHHHhh-c----CceEE
Confidence 4889999999999999999999866 46665555666665532 233333 346665553310 0 01111
Q ss_pred CCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH--HHHcCCCCEEEEeCcCCCCCHHHHHHH
Q 017091 231 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA--RAILRDPAILLLDEATSALDSESEHYV 308 (377)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA--ral~~~p~illlDEPts~LD~~~~~~i 308 (377)
-... .........+..++.++++.++ ..+|+|++|||.|+ .++...|+.. ...++.+
T Consensus 88 ~~~~--~~~~~~~~~~~~~l~~~l~~i~---------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l 146 (484)
T TIGR02655 88 LDAS--PDPEGQDVVGGFDLSALIERIN---------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREI 146 (484)
T ss_pred EecC--chhccccccccCCHHHHHHHHH---------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHH
Confidence 0000 0000011223344555555544 45899999999999 6666665543 4667778
Q ss_pred HHHHHHhhccCCCCeEEEEEecCchh--------H-Hh-cCeEEEEe
Q 017091 309 KGVLHALRNDCKTKRTVIVIAHRLST--------I-KA-VDRIVVID 345 (377)
Q Consensus 309 ~~~l~~l~~~~~~g~tvi~itH~l~~--------~-~~-~d~v~~l~ 345 (377)
.++++.+++ .|+|+|+++|+.+. + .. ||.|+.|+
T Consensus 147 ~~Li~~L~~---~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 147 FRLVARLKQ---IGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHH---CCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 888888764 48999999998764 2 44 89999887
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-09 Score=103.31 Aligned_cols=82 Identities=20% Similarity=0.222 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCcee-----------eeeEEEeCCcEEEEE
Q 017091 98 QSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN-----------HVCLTIEANEVVAIV 166 (377)
Q Consensus 98 ~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~-----------~isl~i~~Ge~~~iv 166 (377)
++..+.+|++++++.++.+..+ +....+.++|+||++.||+. +.+|+ |+++.|.+|+.++|+
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~~~-----~e~~~~ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~~~Iv 174 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNGDD-----PEKAKNRVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQRGLIV 174 (415)
T ss_pred eccccHhHHHHHhCCCccCCCC-----ccccCCCeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCEEEEE
Confidence 3456789999999987663221 11123469999999999864 36897 999999999999999
Q ss_pred cCCCCcHHHHHHHHhhCCCC
Q 017091 167 GLSGSGKSTFVNLLLRLYEP 186 (377)
Q Consensus 167 G~nGsGKSTLl~~l~gl~~p 186 (377)
||+|||||||++.|...+..
T Consensus 175 G~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 175 APPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCCCCChhHHHHHHHHhhcc
Confidence 99999999999999998753
|
Members of this family differ in the specificity of RNA binding. |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.6e-09 Score=94.41 Aligned_cols=65 Identities=26% Similarity=0.347 Sum_probs=50.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCC------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHH
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYE------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 225 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~ 225 (377)
++|++++|+||||||||||+++|++.++ |..|+ ++|.++...+...+++. +.++..++..++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEEC
Confidence 5899999999999999999999999985 77888 58888766666665553 2355555566776
Q ss_pred HH
Q 017091 226 SN 227 (377)
Q Consensus 226 en 227 (377)
+|
T Consensus 78 ~~ 79 (205)
T PRK00300 78 GN 79 (205)
T ss_pred Cc
Confidence 66
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.9e-09 Score=107.41 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=62.8
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCe---EEECCEeCCCCCHHH------HhcceEEEccCC
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ---IYIDGFPLTDLDIRW------LREKIGFVGQEP 217 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~---I~i~g~~i~~~~~~~------~r~~i~~v~Q~~ 217 (377)
..+++++ |++.+|++++|+|+||||||||+++|+|+.+|+.+. |-.+|.++..+.... .|..+++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 4699999 999999999999999999999999999999988643 333444443322221 244699999998
Q ss_pred cCc-cccHHHHHh
Q 017091 218 QLL-QMDIKSNIM 229 (377)
Q Consensus 218 ~l~-~~tv~eni~ 229 (377)
..+ ..++.++..
T Consensus 222 s~~~rl~a~e~a~ 234 (434)
T PRK07196 222 SPLMRIKATELCH 234 (434)
T ss_pred ChhhhHHHHHHHH
Confidence 776 667777764
|
|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.5e-09 Score=103.56 Aligned_cols=62 Identities=32% Similarity=0.458 Sum_probs=55.7
Q ss_pred CCChHHHHHHHHHHHHcC---------CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH
Q 017091 269 LLSGGQKQRIAIARAILR---------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 336 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~---------~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~ 336 (377)
.+|.||+++++||.+|+. +|+|||||||+|+||+..+..+.+.|... |.+++++||+++.+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~------~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL------GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc------CCEEEEEecChhhcc
Confidence 399999999999999999 99999999999999999999999888643 568999999987653
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.4e-09 Score=98.45 Aligned_cols=46 Identities=15% Similarity=0.288 Sum_probs=38.3
Q ss_pred HcCCCCEEEEeCcCCC------CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 017091 284 ILRDPAILLLDEATSA------LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 332 (377)
Q Consensus 284 l~~~p~illlDEPts~------LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l 332 (377)
...+|+++|+| |+++ +|+.....+++.|.++.++ .|.|||+++|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~--~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQ--TGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHH--hCCEEEEEeccC
Confidence 35799999999 7764 6998888899988888653 489999999976
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.4e-09 Score=104.23 Aligned_cols=63 Identities=17% Similarity=0.282 Sum_probs=49.6
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 228 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni 228 (377)
++++.++.+++|.+++++||||+||||++..|++.+.+..|. .+|+++.+|+ |..++.|++
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt--~RigA~EQL 305 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS--YRIGGHEQL 305 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc--cchhHHHHH
Confidence 344555567789999999999999999999999988766653 2578899887 566778887
Q ss_pred hc
Q 017091 229 MY 230 (377)
Q Consensus 229 ~~ 230 (377)
.+
T Consensus 306 r~ 307 (484)
T PRK06995 306 RI 307 (484)
T ss_pred HH
Confidence 54
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.6e-09 Score=93.31 Aligned_cols=79 Identities=23% Similarity=0.279 Sum_probs=58.3
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCc--Cc-cccHH
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ--LL-QMDIK 225 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--l~-~~tv~ 225 (377)
..+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..-...+ .+..+++++|... .+ ..+..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 455566789999999999999999999999999999999999999774322221 2345677766543 22 35677
Q ss_pred HHHhc
Q 017091 226 SNIMY 230 (377)
Q Consensus 226 eni~~ 230 (377)
+.+..
T Consensus 91 ~~l~~ 95 (186)
T cd01130 91 DLLRS 95 (186)
T ss_pred HHHHH
Confidence 76643
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.6e-09 Score=109.13 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 017091 45 TLYRSTQVMAVLLGGMSIMIGQVSPE---QLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 121 (377)
Q Consensus 45 ~~~~~~~~~~~~~g~~~v~~g~lt~g---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~ 121 (377)
.+..+...+++|+|+|+++.|.++.| .+++|..+...+..| ..+...+.++.....+.+|+.++.+...+..
T Consensus 101 ~i~~~~~~~il~ig~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~---- 175 (644)
T PRK10733 101 SIFISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREPS---- 175 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHH----
Confidence 33444567788899999999999998 777777666666666 4556666677666677777777666432110
Q ss_pred ccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 122 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 122 ~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.. + .+...+++| +.|+||+|+||||+.+.+++..
T Consensus 176 --~~---------~----------------~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~ 209 (644)
T PRK10733 176 --RF---------Q----------------KLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 209 (644)
T ss_pred --HH---------H----------------hcCCCCCCc--EEEECCCCCCHHHHHHHHHHHc
Confidence 00 0 011134455 8999999999999999998855
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.8e-08 Score=96.25 Aligned_cols=177 Identities=21% Similarity=0.217 Sum_probs=108.0
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH---HH-----HhcceEEEccCCc
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RW-----LREKIGFVGQEPQ 218 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~---~~-----~r~~i~~v~Q~~~ 218 (377)
..+++++ |.+.+|++++|+|+||+|||||+++|+|..+|+.|.+...|..-.+... .. +++.+-++.+..
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d- 228 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD- 228 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC-
Confidence 4699999 9999999999999999999999999999999999887776654433211 00 111122222111
Q ss_pred CccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh-HHHHHHHHHHHHcCCCCEEEEeCc-
Q 017091 219 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG-GQKQRIAIARAILRDPAILLLDEA- 296 (377)
Q Consensus 219 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSg-Gq~QRv~iAral~~~p~illlDEP- 296 (377)
...-++...+.-..-+.++... .|.+-.+--.+|+- -|-+| .++ +.+.||
T Consensus 229 ----------------~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslTr~A~A~R-Eis---------l~~ge~P 280 (440)
T TIGR01026 229 ----------------QSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVTRFAMAQR-EIG---------LAAGEPP 280 (440)
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChHHHHHHHH-HHH---------HhcCCCC
Confidence 0011122211111222333332 24433332233432 22222 222 123443
Q ss_pred -CCCCCHHHHHHHHHHHHHhhccCCCCe-------EEEEEecCchhHHhcCeEEEEeCCEEEEEcChHH
Q 017091 297 -TSALDSESEHYVKGVLHALRNDCKTKR-------TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 297 -ts~LD~~~~~~i~~~l~~l~~~~~~g~-------tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~ 357 (377)
+.|+||.....+.+++.+... .+. ||++-+||+.. .-+|++..+.+|+|+.+...++
T Consensus 281 ~~~Gypp~~~~~l~~l~ERag~---~~~GSIT~i~tVl~~~~d~~d-pi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 281 ATKGYTPSVFSTLPRLLERAGA---SGKGSITAFYTVLVEGDDMNE-PIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred cccccChhHHHHHHHHHHHhcc---CCCCeeeEEEEEEccCcCCCc-chhhhhccccceEEEEecchhh
Confidence 569999999999999888753 345 78889999832 2379999999999998876554
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-07 Score=99.47 Aligned_cols=54 Identities=30% Similarity=0.411 Sum_probs=48.3
Q ss_pred HHHHHcCCCCEEEEeCcCCCC-CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH
Q 017091 280 IARAILRDPAILLLDEATSAL-DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 336 (377)
Q Consensus 280 iAral~~~p~illlDEPts~L-D~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~ 336 (377)
|+|++..+|+++++|||+.+| |+..++.+.+.++.+++ .|.+++++||+++.+.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK---~g~~vil~TQs~~d~~ 734 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK---ANCLVLMATQSLSDAA 734 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHh
Confidence 678899999999999999999 79999999999998864 4779999999998774
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=3e-07 Score=99.86 Aligned_cols=136 Identities=21% Similarity=0.218 Sum_probs=81.5
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC-CCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY-EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~-~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
.|=+|+++. +.+.++.|+|||++||||++|.++-.. -..-| .|||-+.. ..++.|
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G---------------------~~VPa~~a--~i~~~d 651 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG---------------------SFVPAESA--RIGIVD 651 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC---------------------Cceeccce--EecccC
Confidence 466788887 667899999999999999999986431 11112 12222110 111111
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC--CCCEEEEeCc---CCCCC
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR--DPAILLLDEA---TSALD 301 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~--~p~illlDEP---ts~LD 301 (377)
.|... .|..+ .+. ..+|--+.....++++|-. ++.++|+||| |+.+|
T Consensus 652 ~I~tr----------------iga~d---~i~---------~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~d 703 (854)
T PRK05399 652 RIFTR----------------IGASD---DLA---------SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYD 703 (854)
T ss_pred eeeec----------------cCccc---ccc---------cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcch
Confidence 11100 00000 000 2256666666677776654 8999999999 99999
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcC
Q 017091 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD 339 (377)
Q Consensus 302 ~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d 339 (377)
..+ .....++.+.+. .+.++|++||..+....++
T Consensus 704 g~a--ia~aile~l~~~--~~~~~l~aTH~~el~~l~~ 737 (854)
T PRK05399 704 GLS--IAWAVAEYLHDK--IGAKTLFATHYHELTELEE 737 (854)
T ss_pred hHH--HHHHHHHHHHhc--CCceEEEEechHHHHHHhh
Confidence 544 345556666532 3578999999966544444
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.8e-08 Score=107.21 Aligned_cols=78 Identities=24% Similarity=0.331 Sum_probs=67.7
Q ss_pred CCCCChHHHHHHHHHHHHc------CC--CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhc
Q 017091 267 DDLLSGGQKQRIAIARAIL------RD--PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV 338 (377)
Q Consensus 267 ~~~LSgGq~QRv~iAral~------~~--p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~ 338 (377)
...|||||+=.++||-+|+ .+ -+.++|||||..||+.+...+.++|..+.. .+.+|++|||+.++...+
T Consensus 813 ~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~---~~~qiiIISH~eel~e~~ 889 (908)
T COG0419 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLS---DGRQIIIISHVEELKERA 889 (908)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHh---cCCeEEEEeChHHHHHhC
Confidence 3679999999877776664 45 699999999999999999999999999974 378999999999999899
Q ss_pred CeEEEEeCC
Q 017091 339 DRIVVIDDG 347 (377)
Q Consensus 339 d~v~~l~~G 347 (377)
|.++.++..
T Consensus 890 ~~~i~V~k~ 898 (908)
T COG0419 890 DVRIRVKKD 898 (908)
T ss_pred CeEEEEEec
Confidence 999888743
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-08 Score=90.45 Aligned_cols=33 Identities=9% Similarity=0.177 Sum_probs=26.3
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHH
Q 017091 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~ 303 (377)
.+.|.|++++..+ .+.+|+++|+|+|++..++.
T Consensus 82 ~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 82 YDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred cccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 4578888776554 57889999999999999863
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-07 Score=91.17 Aligned_cols=173 Identities=25% Similarity=0.365 Sum_probs=119.1
Q ss_pred EEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh-hCCCCCCCeEEECCEeCCCCCHHHHhcceEEEcc
Q 017091 137 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 215 (377)
Q Consensus 137 v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~-gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 215 (377)
|++..|.+. .+.+ +-|++| ++.|+|.+=-||||||+.|. |.|+.--| ||.+. |--
T Consensus 227 ve~~LP~~g---~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE~-----------VVT--- 282 (448)
T PF09818_consen 227 VEIELPNGG---TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGREF-----------VVT--- 282 (448)
T ss_pred EEEECCCCC---EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCceE-----------EEE---
Confidence 566666432 3444 468999 99999999999999999997 88876555 44331 110
Q ss_pred CCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC-CCCChHHHHHHHHHHHHcCCCCEEEEe
Q 017091 216 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLD 294 (377)
Q Consensus 216 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~LSgGq~QRv~iAral~~~p~illlD 294 (377)
++.-. .|+ ..+ . .....+.+..|+..+|.|.+|.... .+=||-.-|=..|..||=..+++||+|
T Consensus 283 ~~~av--kir-------AED--G----R~V~~vDISpFI~~LP~g~dT~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiD 347 (448)
T PF09818_consen 283 DPDAV--KIR-------AED--G----RSVEGVDISPFINNLPGGKDTTCFSTENASGSTSQAANIMEALEAGARLLLID 347 (448)
T ss_pred CCCce--EEE-------ecC--C----ceEeCccchHHHhhCCCCCCCCcccccCCCchHHHHHHHHHHHHcCCCEEEEc
Confidence 11000 000 000 0 1123456788999999999987543 468999999999999999999999999
Q ss_pred CcCCCC-----CHHHHHHH----------HHHHHHhhccCCCCeEEEEEecCchhH-HhcCeEEEEeCCEEE
Q 017091 295 EATSAL-----DSESEHYV----------KGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRII 350 (377)
Q Consensus 295 EPts~L-----D~~~~~~i----------~~~l~~l~~~~~~g~tvi~itH~l~~~-~~~d~v~~l~~G~i~ 350 (377)
|=||+- |...+..+ .+.++++.++ .|.++|+|+=-.... ..||+|++|++-+-.
T Consensus 348 EDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~--~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~ 417 (448)
T PF09818_consen 348 EDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEK--LGVSTILVVGGSGDYFDVADRVIMMDEYRPK 417 (448)
T ss_pred CcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHH--cCceEEEEeccchhhHhhCCEEEEecCccch
Confidence 999985 44444444 3344555443 588888887766654 569999999987653
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-08 Score=88.34 Aligned_cols=66 Identities=26% Similarity=0.360 Sum_probs=47.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHh-cceEEEccCCcCc-cccHHHHHhc
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR-EKIGFVGQEPQLL-QMDIKSNIMY 230 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r-~~i~~v~Q~~~l~-~~tv~eni~~ 230 (377)
+||+++|+|+||||||||+++|++++.| +.++|.++... ...+ ...|+.+|+...+ ..++.+|+.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999999877 68899887532 2222 2356666664433 3455555543
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.66 E-value=1e-07 Score=93.29 Aligned_cols=120 Identities=26% Similarity=0.358 Sum_probs=72.9
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCC-CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 235 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 235 (377)
..++..+.|.||+||||||+++.+.+.++ +..|.|..-..++... ......++.|.. .+
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q~e------------vg---- 178 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQRE------------VG---- 178 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEccc------------cC----
Confidence 45789999999999999999999998765 4467776544332110 000111111100 00
Q ss_pred CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHh
Q 017091 236 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 315 (377)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l 315 (377)
. ...+ ---++++||-++|+++++||+. |+.+....++. .
T Consensus 179 -------------------------~------~~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a---a 217 (343)
T TIGR01420 179 -------------------------L------DTLS----FANALRAALREDPDVILIGEMR---DLETVELALTA---A 217 (343)
T ss_pred -------------------------C------CCcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH---H
Confidence 0 0001 1123567888999999999997 88776544332 2
Q ss_pred hccCCCCeEEEEEecCchhHHhcCeE
Q 017091 316 RNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 316 ~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
..|.+++.+.|..+.....+|+
T Consensus 218 ----~tGh~v~~T~Ha~~~~~~~~Rl 239 (343)
T TIGR01420 218 ----ETGHLVFGTLHTNSAAQTIERI 239 (343)
T ss_pred ----HcCCcEEEEEcCCCHHHHHHHH
Confidence 2488999999986554333333
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.3e-08 Score=88.24 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=45.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 217 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 217 (377)
|++++|+||||||||||+++|++...| .+.+++..+........+..+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999998876 5888888777654444566788888875
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.3e-08 Score=98.51 Aligned_cols=70 Identities=26% Similarity=0.316 Sum_probs=59.1
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCC---CeEEECCEeCCCCCHHHH----hcceEEEccCC
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDIRWL----REKIGFVGQEP 217 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~---G~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~ 217 (377)
..+++++ +++.+||+++|+|+||+|||||+++|++...++. |.|-.+|.++..+..+.+ ++++++|+...
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 4699999 9999999999999999999999999999999987 889999988876543333 25678887644
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.7e-08 Score=110.81 Aligned_cols=60 Identities=28% Similarity=0.402 Sum_probs=53.4
Q ss_pred CCCChHHHHHHH----HHHH--------HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch
Q 017091 268 DLLSGGQKQRIA----IARA--------ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 333 (377)
Q Consensus 268 ~~LSgGq~QRv~----iAra--------l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~ 333 (377)
..||||||||++ +|++ +..+|++++|||||++||+.+...+++++.++ +.++||+||++.
T Consensus 1246 ~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l------~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1246 GPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL------DLDFVMTSEREW 1317 (1353)
T ss_pred cCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh------CCCEEEEccchh
Confidence 579999999996 5755 55899999999999999999999999999887 678999999874
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-07 Score=106.14 Aligned_cols=148 Identities=20% Similarity=0.286 Sum_probs=81.8
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC-CCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhc
Q 017091 152 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 230 (377)
Q Consensus 152 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl-~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~ 230 (377)
=+++..+++++++|+|++|+|||||++.+.+. ....+|.+++++..+... . . .+-.+++.-+ +.
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~-~----~--~~~~~~~~~~------~~-- 263 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS-M----E--IYSSANPDDY------NM-- 263 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc-h----h--hccccccccc------ch--
Confidence 34677788999999999999999999999544 455689998876322110 0 0 0001111000 00
Q ss_pred CCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHH
Q 017091 231 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 310 (377)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~ 310 (377)
...+ ...-+.+.+.... . . ... .++.++| +..++-+|+||+- |.. ..++
T Consensus 264 -------~~~l----~~~~l~~il~~~~--~--~--~~~-~~~~~~~------L~~krvLLVLDdv----~~~---~~l~ 312 (1153)
T PLN03210 264 -------KLHL----QRAFLSEILDKKD--I--K--IYH-LGAMEER------LKHRKVLIFIDDL----DDQ---DVLD 312 (1153)
T ss_pred -------hHHH----HHHHHHHHhCCCC--c--c--cCC-HHHHHHH------HhCCeEEEEEeCC----CCH---HHHH
Confidence 0000 0001112222111 0 0 011 2555655 3356667888884 332 3345
Q ss_pred HHHHhhccCCCCeEEEEEecCchhHHh--cCeEEEEe
Q 017091 311 VLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVID 345 (377)
Q Consensus 311 ~l~~l~~~~~~g~tvi~itH~l~~~~~--~d~v~~l~ 345 (377)
.+....+....|.+||++|||...+.. +|+++.+.
T Consensus 313 ~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 313 ALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVC 349 (1153)
T ss_pred HHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEec
Confidence 554433322458899999999998864 68887764
|
syringae 6; Provisional |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.60 E-value=3e-08 Score=91.31 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=39.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHh-hCCCCCCCeEEECCEeCCCCCHHH---HhcceEEEccCC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRW---LREKIGFVGQEP 217 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~-gl~~p~~G~I~i~g~~i~~~~~~~---~r~~i~~v~Q~~ 217 (377)
-+++|+.+.|.||+|||||||...++ ...++..+-+++.... +..+ ..+.+++.+|+.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~----~~~~i~~~~~~~g~~~~~~ 77 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE----SRESIIRQAAQFGMDFEKA 77 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHhCCCHHHH
Confidence 58899999999999999999988654 2334555566776532 2222 234467666653
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.5e-08 Score=94.66 Aligned_cols=80 Identities=21% Similarity=0.167 Sum_probs=65.5
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 228 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni 228 (377)
-++.+.-.+++|++++|+|+||+|||||++.|+|..+|..|+|.+++..-.. ...++++.+++|+..+++.....++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 4666777788999999999999999999999999999999999998754322 2235679999999988877677776
Q ss_pred hcC
Q 017091 229 MYG 231 (377)
Q Consensus 229 ~~~ 231 (377)
.+.
T Consensus 261 ~l~ 263 (356)
T PRK01889 261 QLW 263 (356)
T ss_pred ccc
Confidence 654
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.4e-07 Score=97.21 Aligned_cols=110 Identities=25% Similarity=0.261 Sum_probs=65.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC--------eEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhc
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--------QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 230 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G--------~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~ 230 (377)
..+.++|+||||||||||++++.++.++..| -|.++|..+. ++...+ .|..+
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i-------------------~~~ll 233 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREV-------------------TNPLL 233 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHH-------------------hHHhc
Confidence 3567999999999999999999999875544 3677765542 222111 11112
Q ss_pred CCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHH
Q 017091 231 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 310 (377)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~ 310 (377)
+...+.........++..++.+....+ ...+||| +|+||| +..||+..+..+.+
T Consensus 234 g~~~~~~~~~a~~~l~~~gl~~~~~g~---------v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 234 GSVHDPIYQGARRDLAETGVPEPKTGL---------VTDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred CCccHHHHHHHHHHHHHcCCCchhcCc---------hhhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 211000001111122222222211111 1357888 999999 79999999999998
Q ss_pred HHHH
Q 017091 311 VLHA 314 (377)
Q Consensus 311 ~l~~ 314 (377)
.+++
T Consensus 288 ~Le~ 291 (615)
T TIGR02903 288 VLED 291 (615)
T ss_pred HHhh
Confidence 8875
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.6e-07 Score=90.72 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=51.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCC--CCC-eEEECCEeCCCCCHHHHhcceEEEccCCc-----CccccHHHHHh
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDG-QIYIDGFPLTDLDIRWLREKIGFVGQEPQ-----LLQMDIKSNIM 229 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-----l~~~tv~eni~ 229 (377)
++|..++|+||+||||||+++.|++.+.+ ..+ .|.....++ .+....++...++++|... -|...+++++.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48999999999999999999999999853 334 565555444 3544444555678888642 35567777766
Q ss_pred c
Q 017091 230 Y 230 (377)
Q Consensus 230 ~ 230 (377)
.
T Consensus 211 ~ 211 (358)
T TIGR02524 211 R 211 (358)
T ss_pred c
Confidence 4
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.3e-06 Score=90.06 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=43.1
Q ss_pred HHcCCCCEEEEeCcCCCCC-HHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH
Q 017091 283 AILRDPAILLLDEATSALD-SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 283 al~~~p~illlDEPts~LD-~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
.+..+|.++++|||...|| +...+.+.+.++.+++ .|..++++||+++.+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK---~~~~~i~~TQ~~~d~ 688 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK---LNTFVIFATQSVEDA 688 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHH
Confidence 4567899999999999999 8888899999998864 477899999998763
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.6e-08 Score=87.07 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=27.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 186 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p 186 (377)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999875
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-07 Score=94.55 Aligned_cols=83 Identities=22% Similarity=0.239 Sum_probs=59.7
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-CCCeEEEC---CEeCCCCCHHHHh---cceEEE-----c
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYID---GFPLTDLDIRWLR---EKIGFV-----G 214 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i~---g~~i~~~~~~~~r---~~i~~v-----~ 214 (377)
..+++++ |++.+|++++|+|+||||||||+++|+|+.++ +.|.|.+. |.++.++....++ .+.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 4588988 99999999999999999999999999999854 44667664 4555444333332 235566 8
Q ss_pred cCCcC------ccccHHHHHhc
Q 017091 215 QEPQL------LQMDIKSNIMY 230 (377)
Q Consensus 215 Q~~~l------~~~tv~eni~~ 230 (377)
|+|.. ...++.|.+..
T Consensus 231 q~p~~rlnp~~va~~IAE~~r~ 252 (442)
T PRK06315 231 QSSQLRLNAAYVGTAIAEYFRD 252 (442)
T ss_pred CCHHHHhhHHHHHHHHHHHHHH
Confidence 98742 12467777754
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.2e-07 Score=80.40 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=42.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE-----------CCEeCCCCCHHHH-----hcceEEEccCCcCc
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-----------DGFPLTDLDIRWL-----REKIGFVGQEPQLL 220 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i-----------~g~~i~~~~~~~~-----r~~i~~v~Q~~~l~ 220 (377)
|++++|+||||||||||++.|++.+.+. |.+.+ +|.+....+..++ ...++.++|...++
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLS 76 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcc
Confidence 6789999999999999999999987654 65554 5555544444332 23477777776554
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.4e-07 Score=94.40 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=56.8
Q ss_pred EEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCC
Q 017091 134 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 199 (377)
Q Consensus 134 ~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~ 199 (377)
++|++..|+.. .+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++.+++..+.
T Consensus 187 ~~d~~~v~Gq~---~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVIGQE---QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEECcH---HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 45888888643 5999999999999999999999999999999999999999999999887664
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.6e-07 Score=92.28 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=56.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEe
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 197 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 197 (377)
.++.++++..|..+ ..+++++ |++.+||+++|+|+||+|||||+++|+|..+|+.|.+.+.|..
T Consensus 129 ~~~r~~v~~~l~tG--i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQPLMTG--IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred ceeccCHhheeCCC--ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 47778888888543 4699999 9999999999999999999999999999999999988887764
|
|
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-07 Score=91.74 Aligned_cols=60 Identities=25% Similarity=0.307 Sum_probs=48.9
Q ss_pred CceeeeeEEE---eCCcE-----EEEEcCCCCcHHHHHHHHhhCCCCC---CCeEEECCEeCCCCCHHHHh
Q 017091 148 PILNHVCLTI---EANEV-----VAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLR 207 (377)
Q Consensus 148 ~vL~~isl~i---~~Ge~-----~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~~~~~r 207 (377)
.+++++++.+ ++|+. +||+|+||||||||++.|.+++++. .|.|.+||..+.......++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~ 150 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLA 150 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHH
Confidence 4788888887 67776 9999999999999999999999875 68899999887654444443
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-06 Score=89.10 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=33.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCe-EEECCEe
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGFP 197 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~-I~i~g~~ 197 (377)
-+.+|+++.|.|++|+|||||+..++.......+. +++.+.+
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 58999999999999999999999887765444444 4556643
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.4e-07 Score=83.75 Aligned_cols=54 Identities=30% Similarity=0.491 Sum_probs=39.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCe----EEECCEeCCCCCHHHHhcceEEEccC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ----IYIDGFPLTDLDIRWLREKIGFVGQE 216 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~----I~i~g~~i~~~~~~~~r~~i~~v~Q~ 216 (377)
+..++||.||||||||||++.|++++++++|. |.+|+... + ...+...+++++.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~---~-~~~~~~~g~~~~~ 89 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL---D-NAVLDAHGLRPRK 89 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccC---C-HHHHHhccccccc
Confidence 35799999999999999999999999999998 44444221 2 2223345666653
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.9e-07 Score=66.74 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=31.0
Q ss_pred eeeeeEEEeC-CcEEEEEcCCCCcHHHHHHHHhhCCCCCC
Q 017091 150 LNHVCLTIEA-NEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188 (377)
Q Consensus 150 L~~isl~i~~-Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~ 188 (377)
+++-++++.+ |+.+.|+||||||||||+.++.=++-|..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4456677776 57999999999999999999886665543
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.9e-07 Score=87.34 Aligned_cols=58 Identities=26% Similarity=0.308 Sum_probs=49.2
Q ss_pred EEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEe
Q 017091 137 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 197 (377)
Q Consensus 137 v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 197 (377)
++..|.. ...+++++ |.+.+|++++|+|+||+|||||+++|+|..+|+.|.+..-|.+
T Consensus 49 ~~~~l~t--Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 49 IDEVLPT--GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred ceeEcCC--CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 3344543 24699999 9999999999999999999999999999999999888776654
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.9e-07 Score=88.12 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=53.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC------CHHHHhcceEEEccCCcCc-cccHHHHHh
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL------DIRWLREKIGFVGQEPQLL-QMDIKSNIM 229 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~------~~~~~r~~i~~v~Q~~~l~-~~tv~eni~ 229 (377)
++|++++++|||||||||++..|++.+.+..|+|.+.+.|.... .....+..+.+++|..... ..++++++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999999999999999998889999988776332 1122345688888854433 234455543
|
|
| >COG3044 Predicted ATPase of the ABC class [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=9e-06 Score=79.15 Aligned_cols=163 Identities=22% Similarity=0.206 Sum_probs=105.3
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHh-hCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCC
Q 017091 154 CLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC 232 (377)
Q Consensus 154 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~-gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~ 232 (377)
-+-|++| ++.|+|+|=-|||||+..|. |.+..--| ||.+. +|.. ..+-... .+|..
T Consensus 237 gmgIp~g-it~ItG~nfhGKTTLl~Aie~gvdnHipG----DGRE~-------------vVTd-~~lakae-ae~gr--- 293 (554)
T COG3044 237 GMGIPQG-ITLITGGNFHGKTTLLTAIERGVDNHIPG----DGRER-------------VVTD-VKLAKAE-AEEGR--- 293 (554)
T ss_pred ccCCCcc-eEEEecCCccchhHHHHHHHhcccccCCC----CCceE-------------EEeh-hhhhhhh-cccce---
Confidence 3568899 99999999999999999997 44433222 33221 0000 0000000 00000
Q ss_pred CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC-CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHH------
Q 017091 233 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE------ 305 (377)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~------ 305 (377)
...-..+..|++.+|.+-+|.... ..=||-+.+-..|=||+=...++|++||-+|+...--.
T Consensus 294 -----------~vsg~D~SlFi~~LPggkdTp~fvtgdASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake 362 (554)
T COG3044 294 -----------CVSGLDLSLFINHLPGGKDTPDFVTGDASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKE 362 (554)
T ss_pred -----------eeeccchHHHHHhCCCCCCCcccccCCCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHH
Confidence 111234567899999777776654 35799999999999999999999999999998753221
Q ss_pred ----HHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEE
Q 017091 306 ----HYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRII 350 (377)
Q Consensus 306 ----~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~ 350 (377)
+-+..+..+..+....+.++|.||--+..+. .+||+++|++-+-.
T Consensus 363 ~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddlla~aDRaIvMeDhrpk 412 (554)
T COG3044 363 SEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLAVADRAIVMEDHRPK 412 (554)
T ss_pred hcCcccchHHHHhhhhhccCceEEEEEeccchhhhhhcceEEEecccCcc
Confidence 1122222222221123489999999888765 59999999998765
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.6e-06 Score=69.49 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC--CCCeEEEEEecCch
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC--KTKRTVIVIAHRLS 333 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~--~~g~tvi~itH~l~ 333 (377)
.+......+...++.++++||.-.. ++.....+.+.+....... ..+..+|+++++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4555566677789999999998765 5566667777777764210 14678999998654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.2e-07 Score=84.61 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=37.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC--CCCCeEEECCEeCCCCCHHHHhcceEEE
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE--PSDGQIYIDGFPLTDLDIRWLREKIGFV 213 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v 213 (377)
++||.||||||||||+++|.+++. |++|+|.+-+.|--..+... ++..++.
T Consensus 64 IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~-l~~~g~~ 116 (290)
T TIGR00554 64 IISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQV-LKERNLM 116 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHH-HHHcCCc
Confidence 899999999999999999999998 78898877555543333333 3334543
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.1e-06 Score=74.51 Aligned_cols=85 Identities=21% Similarity=0.292 Sum_probs=74.9
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcCHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMS-IMIGQVSPEQLTKYVLYCE 80 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~g~lt~g~l~~~~~~~~ 80 (377)
+++||+||.|+++.+++.+..++..+...+..+...........+..+..++++++|+++ +..|.+|+|.++++..+..
T Consensus 190 ~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~ 269 (275)
T PF00664_consen 190 IRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSS 269 (275)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 589999999999999999999998888888877777777777777777778889999999 9999999999999999999
Q ss_pred HHHHHH
Q 017091 81 WLIYAT 86 (377)
Q Consensus 81 ~~~~~~ 86 (377)
.+..|+
T Consensus 270 ~~~~pl 275 (275)
T PF00664_consen 270 QLINPL 275 (275)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 888874
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.3e-06 Score=83.40 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=33.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEE-ECCE
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-IDGF 196 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~-i~g~ 196 (377)
-+.+|+++.|.|++|+|||||+..++.......+.+. +.+.
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 4889999999999999999999999877765556664 4554
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.8e-07 Score=88.47 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=47.9
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCC
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 199 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~ 199 (377)
..+++++ |++.+|++++|+|+||+|||||+++|+|..+++.|.|.+.|+.-.
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~~ 202 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERGR 202 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccChH
Confidence 4699999 999999999999999999999999999999999999998886543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 377 | ||||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-64 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-55 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-64 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-55 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 4e-64 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-63 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 7e-53 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-51 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-48 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-48 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 5e-46 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-44 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-44 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-44 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-44 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 6e-44 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 8e-44 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 3e-43 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 3e-43 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-41 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-41 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-39 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 4e-39 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 3e-38 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-38 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-36 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-36 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 3e-20 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-20 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-20 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 3e-20 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 4e-20 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-19 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-19 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 7e-19 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 4e-18 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 5e-17 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 5e-17 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 7e-17 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-15 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-15 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-15 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-15 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-14 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 7e-14 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-13 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-13 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-13 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 7e-13 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 3e-12 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 4e-12 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 6e-12 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 6e-12 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-11 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-11 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-11 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-11 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 4e-11 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 7e-11 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 1e-10 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-10 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-10 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-10 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-10 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 5e-10 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-09 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 1e-09 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 1e-09 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-09 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-09 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-09 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-09 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 5e-09 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 6e-09 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 6e-09 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-08 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 1e-08 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 4e-08 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 6e-08 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 2e-07 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 6e-07 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 1e-06 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 1e-06 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 1e-06 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 5e-06 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 2e-05 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 4e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 5e-05 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-04 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 2e-04 |
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 396 bits (1019), Expect = e-139
Identities = 94/259 (36%), Positives = 149/259 (57%), Gaps = 4/259 (1%)
Query: 119 LSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN 178
LS + + G V+F ++SF YP+ P V +L + T+ +V A+VG +GSGKST
Sbjct: 4 LSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAA 63
Query: 179 LLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN 238
LL LY+P+ G++ +DG PL D +L ++ VGQEP L + NI YG +
Sbjct: 64 LLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTM 123
Query: 239 EDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEA 296
E+I A ++ H+FI P GY+T V + + LSGGQ+Q +A+ARA++R P +L+LD A
Sbjct: 124 EEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNA 183
Query: 297 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHA 356
TSALD+ ++ V+ +L+ RTV++I +LS + I+ + +G + E G H
Sbjct: 184 TSALDAGNQLRVQRLLYESPE--WASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHL 241
Query: 357 ELLHKGRLYAKLVKRQTES 375
+L+ +G Y +V+
Sbjct: 242 QLMERGGCYRSMVEALAAP 260
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 421 bits (1084), Expect = e-137
Identities = 155/377 (41%), Positives = 222/377 (58%), Gaps = 8/377 (2%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMS 61
+RTV +G ++KEL RY LE+ + I++++ + + L ++ +A G
Sbjct: 257 IRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSL 316
Query: 62 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-NQFLS 120
++ + S Q+ ++ + N+ + + GA +VF++ID PS + F
Sbjct: 317 VISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSK 376
Query: 121 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 180
G K + G+++F NI F YPSR V IL + L +++ + VA+VG SG GKST V L+
Sbjct: 377 SGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
Query: 181 LRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240
RLY+P DG + IDG + +++R+LRE IG V QEP L I NI YG DV ++
Sbjct: 437 QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE-DVTMDE 495
Query: 241 IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATS 298
IE A K+A ++FI+ LP ++TLV + LSGGQKQRIAIARA++R+P ILLLDEATS
Sbjct: 496 IEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATS 555
Query: 299 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 358
ALD+ESE V AL + RT IVIAHRLST++ D I D G I+E GNH EL
Sbjct: 556 ALDTESE---AVVQAALDKARE-GRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDEL 611
Query: 359 LHKGRLYAKLVKRQTES 375
+ + +Y KLV QT
Sbjct: 612 MREKGIYFKLVMTQTAG 628
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 410 bits (1056), Expect = e-133
Identities = 144/385 (37%), Positives = 210/385 (54%), Gaps = 22/385 (5%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN-MSFITLYRSTQVMAVLL--G 58
RTV E+K Y L+ ++++ +G+ + +Y A G
Sbjct: 900 FRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMY---FSYAAAFRFG 956
Query: 59 GMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIG----ATEKVFQLIDLLP 114
+ ++ E + +++ V +SS + + ++I+ P
Sbjct: 957 AYLVTQQLMTFENVLLVFSA---IVFGAM-AVGQVSSFAPDYAKATVSASHIIRIIEKTP 1012
Query: 115 SNQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGK 173
S +G+K L G+VQF + F+YP+RP++P+L + L ++ + +A+VG SG GK
Sbjct: 1013 EIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGK 1072
Query: 174 STFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP 233
ST V LL R Y+P G +++DG + L+++WLR ++G V QEP L I NI YG
Sbjct: 1073 STVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDN 1132
Query: 234 -KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAI 290
+ V E+I AAK+A +H+FI SLP Y T V D LSGGQKQRIAIARA++R P I
Sbjct: 1133 SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHI 1192
Query: 291 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 350
LLLDEATSALD+ESE K V AL + RT IVIAHRLSTI+ D IVVI +G++
Sbjct: 1193 LLLDEATSALDTESE---KVVQEALDKARE-GRTCIVIAHRLSTIQNADLIVVIQNGKVK 1248
Query: 351 EVGNHAELLHKGRLYAKLVKRQTES 375
E G H +LL + +Y +V Q +
Sbjct: 1249 EHGTHQQLLAQKGIYFSMVSVQAGA 1273
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 388 bits (1000), Expect = e-132
Identities = 125/373 (33%), Positives = 199/373 (53%), Gaps = 9/373 (2%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMS 61
+ V ++G +E E R+ K+ ++ A + + + +
Sbjct: 214 HKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFP 273
Query: 62 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 121
++ ++ +T L+ + + + + + A + +F ++D
Sbjct: 274 SVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKD--EG 331
Query: 122 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 181
+ R G ++F N++F YP R P L ++ L I A + VA+VG SGSGKST +L+
Sbjct: 332 KRVIDRATGDLEFRNVTFTYPGREV-PALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 390
Query: 182 RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241
R Y+ +G I +DG L + + LR ++ V Q L + +NI Y ++ E I
Sbjct: 391 RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQI 450
Query: 242 EWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSA 299
E AA+ AY +FI + G +T++ ++ LLSGGQ+QRIAIARA+LRD IL+LDEATSA
Sbjct: 451 EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 510
Query: 300 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 359
LD+ESE ++ L L+ + RT +VIAHRLSTI+ D IVV++DG I+E G H+ELL
Sbjct: 511 LDTESERAIQAALDELQKN----RTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 566
Query: 360 HKGRLYAKLVKRQ 372
+ +YA+L K Q
Sbjct: 567 AQHGVYAQLHKMQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 381 bits (980), Expect = e-129
Identities = 132/375 (35%), Positives = 204/375 (54%), Gaps = 13/375 (3%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVL-LGGM 60
+ V YG +E E R+ + ++ A + I + S + AVL L +
Sbjct: 214 HKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSI-ADPVIQMIASLALFAVLFLASV 272
Query: 61 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQS-IGATEKVFQLIDLLPSNQFL 119
+ +++P T + + + + +++S Q + A + +F L+DL
Sbjct: 273 DSIRAELTPGTFTVVFSAM-FGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD-- 329
Query: 120 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 179
+ + +R+ G V +++F Y + P L+HV +I + VA+VG SGSGKST NL
Sbjct: 330 NGKYEAERVNGEVDVKDVTFTYQGKEK-PALSHVSFSIPQGKTVALVGRSGSGKSTIANL 388
Query: 180 LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 239
R Y+ G I +DG + D + LR V Q L I +NI Y + E
Sbjct: 389 FTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTRE 448
Query: 240 DIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEAT 297
IE AA+QA+ EFI ++P G +T++ ++ LSGGQ+QR+AIARA+LRD +L+LDEAT
Sbjct: 449 QIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEAT 508
Query: 298 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 357
SALD+ESE ++ L L+ + +TV+VIAHRLSTI+ D I+V+D+G IIE G HA+
Sbjct: 509 SALDTESERAIQAALDELQKN----KTVLVIAHRLSTIEQADEILVVDEGEIIERGRHAD 564
Query: 358 LLHKGRLYAKLVKRQ 372
LL + YA+L + Q
Sbjct: 565 LLAQDGAYAQLHRIQ 579
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 368 bits (947), Expect = e-124
Identities = 135/373 (36%), Positives = 200/373 (53%), Gaps = 8/373 (2%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMS 61
+ V+ + E+ E + ++ + + T+ ++ + +G
Sbjct: 210 ISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYL 269
Query: 62 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 121
+ G ++ L +V Y E L R+V + ++L QS + ++VFQLID +
Sbjct: 270 AISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVG 329
Query: 122 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 181
++ G + ++SF Y PIL + L+IE E VA VG+SG GKST +NL+
Sbjct: 330 AQPIEIKQGRIDIDHVSFQYNDNEA-PILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 388
Query: 182 RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241
R Y+ + GQI IDG + D LR +IG V Q+ L +K NI+ G P +E++
Sbjct: 389 RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP-TATDEEV 447
Query: 242 EWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSA 299
AAK A H+FI++LP GY+T V + LSGGQKQR++IAR L +P IL+LDEATSA
Sbjct: 448 VEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSA 507
Query: 300 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 359
LD ESE ++ L L D RT +++AHRLSTI D+IVVI++G I+E G H EL+
Sbjct: 508 LDLESESIIQEALDVLSKD----RTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 563
Query: 360 HKGRLYAKLVKRQ 372
K Y L Q
Sbjct: 564 AKQGAYEHLYSIQ 576
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 353 bits (908), Expect = e-123
Identities = 114/252 (45%), Positives = 153/252 (60%), Gaps = 9/252 (3%)
Query: 126 QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 185
+ F NI F Y IL+++ L+I+ EV+ IVG SGSGKST L+ R Y
Sbjct: 2 HHHHHDITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60
Query: 186 PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA 245
P +GQ+ IDG L D WLR ++G V Q+ LL I NI P + E + +AA
Sbjct: 61 PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAA 119
Query: 246 KQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303
K A H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD E
Sbjct: 120 KLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 304 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGR 363
SEH + +H + RTVI+IAHRLST+K DRI+V++ G+I+E G H ELL +
Sbjct: 180 SEHVIMRNMHKICKG----RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE 235
Query: 364 -LYAKLVKRQTE 374
LY+ L + Q++
Sbjct: 236 SLYSYLYQLQSD 247
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 351 bits (902), Expect = e-122
Identities = 98/243 (40%), Positives = 140/243 (57%), Gaps = 8/243 (3%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
+ ++ F Y IL + + N ++A G SG GKST +LL R Y+P+ G+I
Sbjct: 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 251
IDG P+ ++ + R +IGFV Q+ ++ I+ N+ YG D +ED+ A+
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 252 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309
F+ ++P T V + +SGGQ+QR+AIARA LR+P IL+LDEAT++LDSESE V+
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 310 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 369
L +L RT +VIAHRLSTI D+I I+ G+I G H EL+ LYAK V
Sbjct: 180 KALDSLMKG----RTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235
Query: 370 KRQ 372
Q
Sbjct: 236 SEQ 238
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 334 bits (860), Expect = e-115
Identities = 95/258 (36%), Positives = 153/258 (59%), Gaps = 8/258 (3%)
Query: 120 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 179
S ++ +++F +++F YP + L + I + A+VG +GSGKST L
Sbjct: 6 SLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKL 65
Query: 180 LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 239
L R Y+ +G I I G + + +R IG V Q+ L IK NI+YG D +E
Sbjct: 66 LYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL-DATDE 123
Query: 240 DIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEAT 297
++ A K A +++FI +LP ++T+V + LSGG++QRIAIAR +L+DP I++ DEAT
Sbjct: 124 EVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEAT 183
Query: 298 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 357
S+LDS++E+ + + LR + RT+I+IAHRLSTI + + I++++ G+I+E G H +
Sbjct: 184 SSLDSKTEYLFQKAVEDLRKN----RTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKD 239
Query: 358 LLHKGRLYAKLVKRQTES 375
LL YA++ Q+
Sbjct: 240 LLKLNGEYAEMWNMQSGG 257
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 319 bits (820), Expect = e-108
Identities = 110/280 (39%), Positives = 154/280 (55%), Gaps = 9/280 (3%)
Query: 98 QSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTI 157
E +F L+ + L L+ G ++F N+ F Y L V T+
Sbjct: 20 HMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSY--ADGRETLQDVSFTV 77
Query: 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 217
+ +A+VG SG+GKST + LL R Y+ S G I IDG ++ + LR IG V Q+
Sbjct: 78 MPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDT 137
Query: 218 QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 275
L I NI YG N+++E AA+ A +H+ I++ P GY T V + LSGG+K
Sbjct: 138 VLFNDTIADNIRYGRV-TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEK 196
Query: 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335
QR+AIAR IL+ P I+LLDEATSALD+ +E + +L C RT IV+AHRLST+
Sbjct: 197 QRVAIARTILKAPGIILLDEATSALDTSNERA---IQASLAKVCAN-RTTIVVAHRLSTV 252
Query: 336 KAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTES 375
D+I+VI DG I+E G H LL +G +YA + + Q
Sbjct: 253 VNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQ 292
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 304 bits (782), Expect = 5e-99
Identities = 120/376 (31%), Positives = 202/376 (53%), Gaps = 16/376 (4%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN--MSFITLYRSTQVMAVLLGG 59
+ ++++ EEKE+ ++ E L + + + G+ M+ + + GG
Sbjct: 226 LTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVN--NLGFALISGFGG 283
Query: 60 MSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQS-IGATEKVFQLIDLLPSNQF 118
+ ++ + ++ Y + N +++Q + + E++F+++DL +
Sbjct: 284 WLALKDIITVGTIATFIGYS-RQFTRPLNELSNQFNMIQMALASAERIFEILDL-EEEKD 341
Query: 119 LSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN 178
+ V+L+ + G ++F N+ F Y P+L + I+ + VA+VG +GSGK+T VN
Sbjct: 342 DPDAVELREVRGEIEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVN 399
Query: 179 LLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN 238
LL+R Y+ GQI +DG + + LR IG V Q+ L +K N+ YG P +
Sbjct: 400 LLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-GATD 458
Query: 239 EDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEA 296
E+I+ AAK + FI LP GYET++ D+ LS GQ+Q +AI RA L +P IL+LDEA
Sbjct: 459 EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEA 518
Query: 297 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHA 356
TS +D+++E ++ + L +T I+IAHRL+TIK D I+V+ DG I+E+G H
Sbjct: 519 TSNVDTKTEKSIQAAMWKLMEG----KTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHD 574
Query: 357 ELLHKGRLYAKLVKRQ 372
EL+ K Y +L Q
Sbjct: 575 ELIQKRGFYYELFTSQ 590
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 269 bits (690), Expect = 2e-85
Identities = 112/377 (29%), Positives = 201/377 (53%), Gaps = 16/377 (4%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLA--FIRIRESMAYGLWNMSFITLYRSTQVMAVL-LG 58
+R VR + EE E ++ E L I + + + + ++AVL G
Sbjct: 212 VRVVRAFRREEYENENFRKANESLRRSIISAFSLIV---FALPLFIFIVNMGMIAVLWFG 268
Query: 59 GMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLL-QSIGATEKVFQLIDLLPSNQ 117
G+ + Q+ + Y Y I + M+ N+ + + ++ + ++V ++++ P+ +
Sbjct: 269 GVLVRNNQMEIGSIMAYTNYL-MQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIE 327
Query: 118 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV 177
+ L + G V F N+ F Y T P+L+ V +++ +VA++G +GSGKST +
Sbjct: 328 EADNALALPNVEGSVSFENVEFRYFE-NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLM 386
Query: 178 NLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK 237
NL+ RL +P G++ +D + + ++ LR I V QE L IK N+ +G D
Sbjct: 387 NLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE-DAT 445
Query: 238 NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDE 295
+++I AAK A +H+FI+SLP GY++ V+ SGGQKQR++IARA+++ P +L+LD+
Sbjct: 446 DDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDD 505
Query: 296 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 355
TS++D +E K +L L+ K T +I ++ T D+I+V+ +G++ G H
Sbjct: 506 CTSSVDPITE---KRILDGLKRYTK-GCTTFIITQKIPTALLADKILVLHEGKVAGFGTH 561
Query: 356 AELLHKGRLYAKLVKRQ 372
ELL + Y ++ + Q
Sbjct: 562 KELLEHCKPYREIYESQ 578
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 3e-60
Identities = 60/251 (23%), Positives = 113/251 (45%), Gaps = 15/251 (5%)
Query: 130 GHVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
G + +++ Y IL ++ +I + V ++G +GSGKST ++ LRL
Sbjct: 18 GQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE- 74
Query: 189 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN-EDIEWAAKQ 247
G+I IDG + + R+ G + Q+ + + N+ P + ++I A +
Sbjct: 75 GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD---PNAAHSDQEIWKVADE 131
Query: 248 AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305
+ I P + ++ D +LS G KQ + +AR++L ILLLDE ++ LD +
Sbjct: 132 VGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY 191
Query: 306 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH-KGRL 364
++ L DC TVI+ R+ + D+ +VI++ ++ + + EL H
Sbjct: 192 QIIRRTLKQAFADC----TVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADR 247
Query: 365 YAKLVKRQTES 375
+ +
Sbjct: 248 FVAGFIGSPKM 258
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 6e-45
Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 29/249 (11%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++ ++++Y L + + I+ EV AI+G +G GKST + +PS G+I
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 192 YIDGFPLTD--LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYG-----CPKDVKNEDIE 242
D P+ I LRE IG V Q+P QL + ++ +G P+D + ++
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 243 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
A K+ + LS GQK+R+AIA ++ +P +L+LDE T+ LD
Sbjct: 126 NALKRTGIEHLKDKPT---------HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDP 176
Query: 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRII------EVGNH 355
+ +L ++ + T+I+ H + + D + V+ +GR+I EV
Sbjct: 177 MGVSEIMKLLVEMQKELGI--TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
Query: 356 AELLHKGRL 364
E++ K L
Sbjct: 235 KEVIRKVNL 243
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 9e-44
Identities = 57/250 (22%), Positives = 103/250 (41%), Gaps = 32/250 (12%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
+Q I + IL + I + + GL+G+GK+T +N+L + G +
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 192 YIDGFPL--TDLDIRWLREKIGFVGQEPQLLQMDIKSNI------------MYGCPKDVK 237
+ G +R+ IGFV L + G +D+
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHS---LLEKFQEGERVIDVVISGAFKSIGVYQDID 135
Query: 238 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDE 295
+E A + +L L G + LS G+KQR+ IARA++ P +L+LDE
Sbjct: 136 DEIRNEAHQ-------LLKL-VGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDE 187
Query: 296 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGN 354
+ LD + + +L +L + T +I + H + I +I+++ DG+ I+ G
Sbjct: 188 PAAGLDFIARESLLSILDSLSDSYPTL-AMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246
Query: 355 HAELLHKGRL 364
++L +
Sbjct: 247 VEDILTSENM 256
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 149 bits (380), Expect = 2e-43
Identities = 74/235 (31%), Positives = 122/235 (51%), Gaps = 26/235 (11%)
Query: 132 VQFVNISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 190
V+ N++ Y + L +V L I+ E V+I+G SGSGKST +N++ L +P++G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 191 IYIDGFPLTDLD------IRWLREKIGFVGQEPQLL-QMDIKSNIM----YGCPKDVKNE 239
+YID DLD IR R+KIGFV Q+ L+ + N+ + + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIR--RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 240 DIEWAAKQAYVHEFILSLPCGYETLVDDDL---LSGGQKQRIAIARAILRDPAILLLDEA 296
+ A + L + E + LSGGQ+QR+AIARA+ +P I+L D+
Sbjct: 120 ERRKRALEC------LKM-AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQP 172
Query: 297 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 351
T ALDS++ + +L L + +TV+V+ H ++ + +RI+ + DG +
Sbjct: 173 TWALDSKTGEKIMQLLKKLNE--EDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 2e-43
Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 30/242 (12%)
Query: 132 VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 190
++ NI+ + T+ LN+V L + A ++ ++G SG+GKST + + L P++G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 191 IYIDGFPLTDLD---IRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDI 241
+ +DG LT L + R +IG + Q LL + N+ PK
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK------- 137
Query: 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSA 299
+ V E +LSL G D LSGGQKQR+AIARA+ +P +LL D+ATSA
Sbjct: 138 --DEVKRRVTE-LLSL-VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA 193
Query: 300 LDSESEHYVKGVLHALR--NDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHA 356
LD + + +L L+ N + T+++I H + +K + D + VI +G +IE +
Sbjct: 194 LDPAT---TRSILELLKDINR-RLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS 249
Query: 357 EL 358
E+
Sbjct: 250 EV 251
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 148 bits (377), Expect = 9e-43
Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 28/240 (11%)
Query: 132 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 189
++ VN+S + L +V L I E + + G +GSGKST + ++ L EP+ G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 190 QIYIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYG-----CPKDVKNEDIE 242
+ DG +R IG Q P Q + + + +D ++
Sbjct: 63 DVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV-PLVK 118
Query: 243 WAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSAL 300
A + + L +++ D LSGG+K+R+AIA I+ +P IL+LDE L
Sbjct: 119 KAMEF-------VGLD--FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGL 169
Query: 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELL 359
D E + + ++ + +TVI+I+H + T+ VDR+VV++ G+ + G E L
Sbjct: 170 DREGKTDLLRIVEKWK---TLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 226
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 3e-42
Identities = 70/259 (27%), Positives = 124/259 (47%), Gaps = 49/259 (18%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
M + N +F + +R P LN + +I +VA+VG G GKS+ ++ LL + +
Sbjct: 1 MNSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE 59
Query: 189 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK----------- 237
G + I G + +V Q+ + ++ NI++GC +
Sbjct: 60 GHVAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACAL 106
Query: 238 NEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDE 295
D+E LP G T + + LSGGQKQR+++ARA+ + I L D+
Sbjct: 107 LPDLE-------------ILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 153
Query: 296 ATSALDSE-SEHYVKGVLH---ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 351
SA+D+ +H + V+ L+N +T I++ H +S + VD I+V+ G+I E
Sbjct: 154 PLSAVDAHVGKHIFENVIGPKGMLKN-----KTRILVTHSMSYLPQVDVIIVMSGGKISE 208
Query: 352 VGNHAELLHKGRLYAKLVK 370
+G++ ELL + +A+ ++
Sbjct: 209 MGSYQELLARDGAFAEFLR 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 5e-42
Identities = 56/257 (21%), Positives = 107/257 (41%), Gaps = 53/257 (20%)
Query: 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 189
V N++ + P+L + IE +++A+ G +G+GK++ + +++ EPS+G
Sbjct: 5 TEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 190 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK-----------N 238
+I G +I F Q ++ IK NI++G D
Sbjct: 64 KIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLE 110
Query: 239 EDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEA 296
EDI ++ + LSGGQ+ RI++ARA+ +D + LLD
Sbjct: 111 EDIS-------------KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 157
Query: 297 TSALDSES-----EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 351
LD + E V ++ +T I++ ++ +K D+I+++ +G
Sbjct: 158 FGYLDVLTEKEIFESCVCKLMA--------NKTRILVTSKMEHLKKADKILILHEGSSYF 209
Query: 352 VGNHAELLHKGRLYAKL 368
G +EL + ++
Sbjct: 210 YGTFSELQNLQPDFSSK 226
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 1e-41
Identities = 59/232 (25%), Positives = 111/232 (47%), Gaps = 29/232 (12%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++ NI IL + L+++ E V+I+G SGSGKST + +L L P++G++
Sbjct: 5 LRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 192 YIDGFPLTDLD------IRWLREKIGFVGQEPQLL-QMDIKSNIM----Y-GCPKDVKNE 239
+++G + + +R K+GFV Q L+ ++ N++ G PK E
Sbjct: 62 FLEGKEVDYTNEKELSLLR--NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKE 119
Query: 240 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 299
E+ + + + + P LSGG++QR+AIARA+ +P +L DE T
Sbjct: 120 RGEYLLSELGLGDKLSRKP---------YELSGGEQQRVAIARALANEPILLFADEPTGN 170
Query: 300 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 351
LDS + V + + + +++++ H + R + + DG+++
Sbjct: 171 LDSANTKRVMDIFLKIN---EGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 3e-41
Identities = 46/236 (19%), Positives = 87/236 (36%), Gaps = 27/236 (11%)
Query: 132 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 190
+Q N+ + L ++ L + E V I+G +GSGK+T + + L P G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-LPYSGN 59
Query: 191 IYIDGFPLTDLDIRWLREKIGFVGQEPQL--LQMDIKSNIMYGC-PKDVKNEDIEWAAKQ 247
I+I+G +++R +R I + P+ + + + + K + + K
Sbjct: 60 IFING-----MEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLK- 113
Query: 248 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 307
L L L S GQ + + A+ P I+ LDE +D+ H
Sbjct: 114 ------ALKLGEEILRRKLYKL-SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHV 166
Query: 308 VKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIE-VGNHAELLHK 361
+ + + I++ H L + G ++ + +ELL
Sbjct: 167 ISRYIKEY------GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 4e-41
Identities = 77/222 (34%), Positives = 113/222 (50%), Gaps = 24/222 (10%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWL 206
+L + + I EVV ++G SGSGKSTF+ L L + +G+I IDG L ++ +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 207 REKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAY-------VHEFILSLP 258
RE++G V Q L M + +NI P V+ E A +A + + + P
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLA-PMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP 157
Query: 259 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318
D LSGGQ QR+AIARA+ +P I+L DE TSALD E V VL ++
Sbjct: 158 ---------DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGEVLSVMKQL 205
Query: 319 CKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 359
T++V+ H + + V DR++ +D G IIE G +L
Sbjct: 206 ANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 6e-40
Identities = 57/258 (22%), Positives = 107/258 (41%), Gaps = 53/258 (20%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
++SF S P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 40 SLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
Query: 196 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK-----------NEDIEWA 244
+I F Q ++ IK NI+ G D EDI
Sbjct: 100 -------------RISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDIS-- 143
Query: 245 AKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
++ + LSGGQ+ RI++ARA+ +D + LLD LD
Sbjct: 144 -----------KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
Query: 303 ES-----EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 357
+ E V ++ +T I++ ++ +K D+I+++ +G G +E
Sbjct: 193 LTEKEIFESCVCKLMA--------NKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE 244
Query: 358 LLHKGRLYAKLVKRQTES 375
L + ++ +
Sbjct: 245 LQNLRPDFSSKLMGCDSF 262
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-38
Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 26/229 (11%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--------- 199
+L V L A +V++I+G SGSGKSTF+ + L +PS+G I ++G +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 200 ----DLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 254
+R LR ++ V Q L M + N+M P V A ++A
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-PIQVLGLSKHDARERA---LKY 136
Query: 255 LSLPCGYETLVDDDL---LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 311
L+ G + LSGGQ+QR++IARA+ +P +LL DE TSALD E V V
Sbjct: 137 LAK-VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE---LVGEV 192
Query: 312 LHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 359
L ++ + +T++V+ H + + V ++ + G+I E G+ ++
Sbjct: 193 LRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 3e-37
Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 38/244 (15%)
Query: 119 LSEGVKLQRLMGHVQFVNISFHYPS---RPTVPILNHVCLTIEANEVVAIVGLSGSGKST 175
L + + +F YPS +LN +E++ ++G +G+GK+T
Sbjct: 334 LQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTT 393
Query: 176 FVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCP 233
+ LL +P +GQ + L++ +KI QL I+ +
Sbjct: 394 LIKLLAGALKPDEGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFL---N 444
Query: 234 KDVKNEDIE----WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289
+ + ++ V LSGG+ QR+AI A+
Sbjct: 445 PQFQTDVVKPLRIDDIIDQEVQH-----------------LSGGELQRVAIVLALGIPAD 487
Query: 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGR 348
I L+DE ++ LDSE V+ K+T ++ H + D+++V +
Sbjct: 488 IYLIDEPSAYLDSEQRIICSKVIRRFIL--HNKKTAFIVEHDFIMATYLADKVIVFEGIP 545
Query: 349 IIEV 352
Sbjct: 546 SKNA 549
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 5e-34
Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 50/243 (20%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI---- 191
+++ Y + H T +V+ +VG +G GKST + +L +P+ G+
Sbjct: 82 HVTHRYSA---NSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPP 138
Query: 192 -------YIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGC-----PKDVK 237
Y G L + + L + I + + + IK + +
Sbjct: 139 EWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKS 198
Query: 238 NEDIEWAAKQ--------AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289
ED++ K + + LSGG+ QR AI + +++
Sbjct: 199 PEDVKRYIKILQLENVLKRDIEK-----------------LSGGELQRFAIGMSCVQEAD 241
Query: 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGR 348
+ + DE +S LD + +R+ + VI + H LS + + D + +I
Sbjct: 242 VYMFDEPSSYLDVKQ---RLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298
Query: 349 IIE 351
+
Sbjct: 299 SVY 301
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 5e-36
Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 20/216 (9%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209
L + IE E+ ++G +G+GK+T + ++ L +PS G + + G + + + +R+
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89
Query: 210 IGFVGQEPQL-LQMDIKSNI-----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 263
I ++ +E M + Y E +E A + A + E I Y
Sbjct: 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTY-- 147
Query: 264 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 323
S G +++ IARA++ +P + +LDE TS LD + V+ +L +
Sbjct: 148 -------SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE---GL 197
Query: 324 TVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 358
T++V +H + ++ + DRI +I +G I+E G EL
Sbjct: 198 TILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 4e-35
Identities = 63/234 (26%), Positives = 97/234 (41%), Gaps = 48/234 (20%)
Query: 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 190
V + + Y S L I+ EV+ IVG +G GK+TFV +L + EP++G+
Sbjct: 287 LVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 342
Query: 191 IYIDG-----FPLTDLDIR-----WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240
I D D L + +L K+ ++ K + D
Sbjct: 343 IEWDLTVAYKPQYIKADYEGTVYELLSKID-----ASKLNSNFYKTELL----KPLGIID 393
Query: 241 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 300
+ V+E LSGG+ QR+AIA +LRD I LLDE ++ L
Sbjct: 394 L----YDREVNE-----------------LSGGELQRVAIAATLLRDADIYLLDEPSAYL 432
Query: 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
D E V + L K ++T +V+ H + I V DR++V +G + G
Sbjct: 433 DVEQRLAVSRAIRHLME--KNEKTALVVEHDVLMIDYVSDRLMVF-EGEPGKYG 483
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 2e-32
Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 23/227 (10%)
Query: 135 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS------D 188
+ Y + + ++ VV IVG +G+GKST V +L P+
Sbjct: 25 EDCVHRYGVNA---FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDS 81
Query: 189 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQ 247
I F +L + + K G + + Q D+ + G ++ + E +
Sbjct: 82 WDGVIRAFRGNELQNYFEKLKNGEIRPVVKP-QYVDLIPKAVKGKVIELLKKADETGKLE 140
Query: 248 AYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305
V L E +++ ++ LSGG+ QR+AIA A+LR+ DE +S LD
Sbjct: 141 EVVKALEL------ENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQR 194
Query: 306 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIE 351
+ L + ++V+V+ H L+ + + D I V+ +
Sbjct: 195 LNAARAIRRLS---EEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVY 238
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 6e-35
Identities = 56/234 (23%), Positives = 95/234 (40%), Gaps = 23/234 (9%)
Query: 132 VQFVNISFHYPSRPT-----VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 186
+ VN+ + + ++ VV IVG +G+GK+T V +L P
Sbjct: 84 ISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIP 143
Query: 187 S------DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240
+ I F +L + R K G + + +D+ + G +++ +
Sbjct: 144 NLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV 203
Query: 241 IEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATS 298
E + V E L E ++D +L LSGG+ QR+AIA A+LR DE +S
Sbjct: 204 DEVGKFEEVVKELEL------ENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSS 257
Query: 299 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIE 351
LD V V+ L + V+V+ H L+ + + D I V+ +
Sbjct: 258 YLDIRQRLKVARVIRRLA---NEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVY 308
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 3e-33
Identities = 60/234 (25%), Positives = 96/234 (41%), Gaps = 48/234 (20%)
Query: 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 190
V++ + Y S L I EV+ IVG +G GK+TFV +L + EP++G+
Sbjct: 357 LVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 412
Query: 191 IYIDG---F--PLTDLDIR-----WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240
+ D + + L + +L K+ ++ K + D
Sbjct: 413 VEWDLTVAYKPQYIKAEYEGTVYELLSKID-----SSKLNSNFYKTELL----KPLGIID 463
Query: 241 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 300
+ V + LSGG+ QR+AIA +LRD I LLDE ++ L
Sbjct: 464 L----YDRNVED-----------------LSGGELQRVAIAATLLRDADIYLLDEPSAYL 502
Query: 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
D E V + L K ++T +V+ H + I V DR++V +G G
Sbjct: 503 DVEQRLAVSRAIRHLME--KNEKTALVVEHDVLMIDYVSDRLIVF-EGEPGRHG 553
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 2e-34
Identities = 40/214 (18%), Positives = 84/214 (39%), Gaps = 38/214 (17%)
Query: 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--------D 200
L + E++ I+G +G GK+TF +L+ +G + + L+ +
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPN 342
Query: 201 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 260
D +++ + ++ + K + + ++ V++
Sbjct: 343 YDGT-VQQYLENASKDALSTSSWFFEEVT----KRLNLHRL----LESNVND-------- 385
Query: 261 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 320
LSGG+ Q++ IA + ++ + +LD+ +S LD E + V + + +
Sbjct: 386 ---------LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTR--E 434
Query: 321 TKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 353
K +I H LS + DRI+V G + G
Sbjct: 435 RKAVTFIIDHDLSIHDYIADRIIVF-KGEPEKAG 467
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 3e-32
Identities = 42/209 (20%), Positives = 85/209 (40%), Gaps = 25/209 (11%)
Query: 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR-EKIGFVG 214
T + N ++ ++G +G GK+T + +L P+ G + D ++ R ++I
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGKDEVLKRFRGKEIYNYF 78
Query: 215 QEP---------QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 265
+E ++ ++ S + G ++ + E K + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNM------TNLW 132
Query: 266 DDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 323
+ D LSGG QR+ +A ++LR+ + + D+ +S LD + + L +
Sbjct: 133 NKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL----LKNK 188
Query: 324 TVIVIAHRLSTIKAV-DRIVVIDDGRIIE 351
VIV+ H L + + D I +I +
Sbjct: 189 YVIVVDHDLIVLDYLTDLIHIIYGESSVY 217
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 1e-33
Identities = 44/209 (21%), Positives = 84/209 (40%), Gaps = 32/209 (15%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209
L + +TIE VV G +G GK+T + + +P G+I +G I ++ K
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGV-----PITKVKGK 79
Query: 210 IGFVGQEPQL-LQMDIKSNI-----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 263
I F+ +E + ++ ++ + +YG + +I A + V +
Sbjct: 80 IFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLD----------- 126
Query: 264 LVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT 321
+ L LS G +R+ +A +L + I +LD+ A+D +S+H V + + +
Sbjct: 127 -LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 185
Query: 322 KRTVIVIAHRLSTIKAVDRIVVIDDGRII 350
+I LS D +
Sbjct: 186 --VIISSREELSY---CDVNENLHKYSTK 209
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 2e-31
Identities = 66/250 (26%), Positives = 118/250 (47%), Gaps = 36/250 (14%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
M + N+S + V L++V + IE E I+G SG+GK+TF+ ++ L PS
Sbjct: 1 MVRIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59
Query: 189 GQIYIDGFPLTDLDIRWLREK---IGFVGQE----PQLLQMDIKSNIMYG-----CPKDV 236
G++Y D + + + IG V Q P + NI + K+
Sbjct: 60 GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN---LTAFENIAFPLTNMKMSKEE 116
Query: 237 KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLD 294
+ +E AK IL + +++ LSG Q+QR+A+ARA+++DP++LLLD
Sbjct: 117 IRKRVEEVAK-------ILDI----HHVLNHFPRELSGAQQQRVALARALVKDPSLLLLD 165
Query: 295 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV---DRIVVIDDGRIIE 351
E S LD+ + ++ +++ T++V++H DR+ V+ G++++
Sbjct: 166 EPFSNLDARMRDSARALVKEVQSRLGV--TLLVVSH--DPADIFAIADRVGVLVKGKLVQ 221
Query: 352 VGNHAELLHK 361
VG +L
Sbjct: 222 VGKPEDLYDN 231
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-30
Identities = 43/221 (19%), Positives = 87/221 (39%), Gaps = 22/221 (9%)
Query: 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 207
L + + A E++ +VG +G+GKST + + + G I G PL L
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLA 72
Query: 208 EKIGFVGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 266
++ Q+ + + + E + A + + + +
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-------GRSTN 125
Query: 267 DDLLSGGQKQRIAIARAIL-------RDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319
LSGG+ QR+ +A +L +LLLDE ++LD + + L
Sbjct: 126 Q--LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS---ALDKILSALS 180
Query: 320 KTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 359
+ +++ +H L+ T++ R ++ G+++ G E+L
Sbjct: 181 QQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 5e-28
Identities = 78/251 (31%), Positives = 128/251 (50%), Gaps = 45/251 (17%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 184
M ++ NI + + LN++ L I+ E +A++G SGSGKST LL +Y
Sbjct: 1 MVEIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKST----LLYTIAGIY 53
Query: 185 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE----PQLLQMDIKSNIMYG-----CPKD 235
+P+ G+IY D +T+L + R +G V Q P M + NI + P++
Sbjct: 54 KPTSGKIYFDEKDVTELPPK-DRN-VGLVFQNWALYPH---MTVYKNIAFPLELRKAPRE 108
Query: 236 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLL 293
++ + AK +L + + L++ LSGGQ+QR+AIARA++++P +LLL
Sbjct: 109 EIDKKVREVAK-------MLHI----DKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLL 157
Query: 294 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV---DRIVVIDDGRII 350
DE S LD+ V+ L L+ + T + + H +A+ DRI VI +G I+
Sbjct: 158 DEPLSNLDALLRLEVRAELKRLQKELGI--TTVYVTH--DQAEALAMADRIAVIREGEIL 213
Query: 351 EVGNHAELLHK 361
+VG E+ +K
Sbjct: 214 QVGTPDEVYYK 224
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 1e-27
Identities = 64/243 (26%), Positives = 107/243 (44%), Gaps = 50/243 (20%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LYEPS 187
++FV + YP + V I E+V ++G SGSGK+T +LR L P+
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTT----ILRLIAGLERPT 68
Query: 188 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYG-----CPKDVKNEDI 241
G ++I G +TDL + + +G V Q L Q M + N+ +G PKD + +
Sbjct: 69 KGDVWIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARV 126
Query: 242 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 301
+ + + P LSGGQ+QR+A+ARA+ P +LL DE +A+D
Sbjct: 127 RELLRFMRLESYANRFP---------HELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
Query: 302 SESEHYVKGVLHALRNDCK-----TKRTVIVIAH------RLSTIKAVDRIVVIDDGRII 350
+ LR + T + + H ++ DR++V+ +G +
Sbjct: 178 -------TQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVA-----DRVLVLHEGNVE 225
Query: 351 EVG 353
+ G
Sbjct: 226 QFG 228
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-27
Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 41/227 (18%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
N+ F+Y + + + + +++A++G +G GKST ++LLL ++ P G+I +
Sbjct: 9 NLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ 66
Query: 196 FPLTDLDIRWLREKIGFVGQEPQ----LLQMDIKSNIMYGC-P-----KDVKNEDIEWAA 245
IGFV Q +DI ++ G K+ D + A
Sbjct: 67 -------------SIGFVPQFFSSPFAYSVLDI---VLMGRSTHINTFAKPKSHDYQ-VA 109
Query: 246 KQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303
QA L L + LSGGQ+Q I IARAI + ++LLDE TSALD
Sbjct: 110 MQA------LDY-LNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162
Query: 304 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 349
++ V +L L TV+ H+ + + A+ ++ ++++
Sbjct: 163 NQDIVLSLLIDLAQS--QNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 2e-26
Identities = 66/257 (25%), Positives = 116/257 (45%), Gaps = 63/257 (24%)
Query: 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LYEP 186
+ ++S + + P+LN + L+++ E++ I+G SG GK+T LLR +P
Sbjct: 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTT----LLRCLAGFEQP 56
Query: 187 SDGQIYIDGFPLTDLDIRWLREK--IGFVGQE----PQLLQMDIKSNIMYGCPKDVKNED 240
G+I + G + + + +G++ QE P + + NI YG + N
Sbjct: 57 DSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP---HLTVYRNIAYG----LGNGK 109
Query: 241 IEWAAKQAYVHEFILSLPCGYETLVD-DDL-------LSGGQKQRIAIARAILRDPAILL 292
A ++ + +L L +L LSGGQ+QR A+ARA+ DP ++L
Sbjct: 110 GRTAQERQRIEA-MLE-------LTGISELAGRYPHELSGGQQQRAALARALAPDPELIL 161
Query: 293 LDEATSALDSESEHYVKGVLHALRNDCKT--KR---TVIVIAH------RLSTIKAVDRI 341
LDE SALD + + +R D + + + ++H + + DRI
Sbjct: 162 LDEPFSALD-------EQLRRQIREDMIAALRANGKSAVFVSHDREEALQYA-----DRI 209
Query: 342 VVIDDGRIIEVGNHAEL 358
V+ GRI++ + EL
Sbjct: 210 AVMKQGRILQTASPHEL 226
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 7e-26
Identities = 68/261 (26%), Positives = 112/261 (42%), Gaps = 65/261 (24%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 184
M ++ VN+ ++ V ++ V ++ E VA++G SG GK+T L +Y
Sbjct: 1 MPSIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTT----TLLMLAGIY 53
Query: 185 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE----PQLLQMDIKSNIMYG-----CPKD 235
+P+ G+IY D + D+ + RE +G V Q P M + NI + KD
Sbjct: 54 KPTSGEIYFDDVLVNDIPPK-YRE-VGMVFQNYALYPH---MTVFENIAFPLRARRISKD 108
Query: 236 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLL 293
+ + A+ L + + L+D LSGGQ+QR+A+ARA+++ P +LL
Sbjct: 109 EVEKRVVEIAR-------KLLI----DNLLDRKPTQLSGGQQQRVALARALVKQPKVLLF 157
Query: 294 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH-RLST---------IKAV---DR 340
DE S LD+ LR R I L +A+ R
Sbjct: 158 DEPLSNLDA-----------NLRM---IMRAEIKHLQQELGITSVYVTHDQAEAMTMASR 203
Query: 341 IVVIDDGRIIEVGNHAELLHK 361
I V + G++++ G E+
Sbjct: 204 IAVFNQGKLVQYGTPDEVYDS 224
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 7e-26
Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 29/219 (13%)
Query: 151 NHVCLTIE-ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209
+ + E + ++G +G+GKS F+ L+ + +P G++ ++G +T L R
Sbjct: 14 FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRG 71
Query: 210 IGFVGQEPQLL-QMDIKSNIMYG---CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 265
IGFV Q+ L + + NI YG + ++ + A++ + + P
Sbjct: 72 IGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP------- 124
Query: 266 DDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV 325
LSGG++QR+A+ARA++ P +LLLDE SA+D +++ + L ++ + +
Sbjct: 125 --ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR--EFDVPI 180
Query: 326 IVIAH------RLSTIKAVDRIVVIDDGRIIEVGNHAEL 358
+ + H L+ D + V+ +GRI+E G EL
Sbjct: 181 LHVTHDLIEAAMLA-----DEVAVMLNGRIVEKGKLKEL 214
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 3e-25
Identities = 69/265 (26%), Positives = 112/265 (42%), Gaps = 67/265 (25%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 184
M V+ V++ + V ++ L ++ E + ++G SG GK+T LR L
Sbjct: 1 MAGVRLVDVWKVFGEVTAVREMS---LEVKDGEFMILLGPSGCGKTT----TLRMIAGLE 53
Query: 185 EPSDGQIYIDGFPLTDLDIRWLRE----KIGFVGQE----PQLLQMDIKSNIMYG----- 231
EPS GQIYI + D + I V Q P M + NI +
Sbjct: 54 EPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPH---MTVYDNIAFPLKLRK 110
Query: 232 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 289
P+ ++ + A+ +L L L++ LSGGQ+QR+A+ RAI+R P
Sbjct: 111 VPRQEIDQRVREVAE-------LLGL----TELLNRKPRELSGGQRQRVALGRAIVRKPQ 159
Query: 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH-RLST---------IKAV- 338
+ L+DE S LD++ LR R + +L ++A+
Sbjct: 160 VFLMDEPLSNLDAK-----------LRVR---MRAELKKLQRQLGVTTIYVTHDQVEAMT 205
Query: 339 --DRIVVIDDGRIIEVGNHAELLHK 361
DRI V++ G + +VG+ E+ K
Sbjct: 206 MGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 5e-25
Identities = 74/261 (28%), Positives = 124/261 (47%), Gaps = 65/261 (24%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 184
M V+ N++ + + +N + LTI+ E + ++G SG GK+T LR L
Sbjct: 9 MVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTT----TLRMIAGLE 61
Query: 185 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE----PQLLQMDIKSNIMYG-----CPKD 235
EP++G+IY +T L + R I V Q P M + NI + PKD
Sbjct: 62 EPTEGRIYFGDRDVTYLPPK-DRN-ISMVFQSYAVWPH---MTVYENIAFPLKIKKFPKD 116
Query: 236 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLL 293
++ + WAA+ +L + E L++ LSGGQ+QR+A+ARAI+ +P +LL+
Sbjct: 117 EIDKRVRWAAE-------LLQI----EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM 165
Query: 294 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH-RLST---------IKAV---DR 340
DE S LD++ LR R I +L ++A+ DR
Sbjct: 166 DEPLSNLDAK-----------LRVA---MRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDR 211
Query: 341 IVVIDDGRIIEVGNHAELLHK 361
I V++ G+++++G+ E+ +
Sbjct: 212 IAVMNRGQLLQIGSPTEVYLR 232
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-24
Identities = 68/248 (27%), Positives = 112/248 (45%), Gaps = 55/248 (22%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LYEPS 187
++ ++S + + L+++ L +E+ E I+G +G+GK+ L + P
Sbjct: 2 IEIESLSRKWKNF----SLDNLSLKVESGEYFVILGPTGAGKTL----FLELIAGFHVPD 53
Query: 188 DGQIYIDGFPLTDLDIRWLREKIGFVGQE----PQLLQMDIKSNIMYG--CPKDVKNEDI 241
G+I +DG +TDL + I FV Q P M++K N+ +G K + +
Sbjct: 54 SGRILLDGKDVTDLSPE--KHDIAFVYQNYSLFPH---MNVKKNLEFGMRMKKIKDPKRV 108
Query: 242 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 301
A+ + + P LSGG++QR+A+ARA++ +P ILLLDE SALD
Sbjct: 109 LDTARDLKIEHLLDRNP---------LTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
Query: 302 SESEHYVKGVLHALRNDCK-----TKRTVIVIAH------RLSTIKAVDRIVVIDDGRII 350
R K TV+ I H ++ DRI V+ DG++I
Sbjct: 160 -------PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMA-----DRIAVVMDGKLI 207
Query: 351 EVGNHAEL 358
+VG E+
Sbjct: 208 QVGKPEEI 215
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 3e-23
Identities = 76/266 (28%), Positives = 110/266 (41%), Gaps = 75/266 (28%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 184
M VQ N++ + V + + L I E V VG SG GKST LLR L
Sbjct: 1 MASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKST----LLRMIAGLE 53
Query: 185 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE----PQLLQMDIKSNIMYG-----CPKD 235
+ G ++I + D +G V Q P + + N+ +G K+
Sbjct: 54 TITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPH---LSVAENMSFGLKLAGAKKE 108
Query: 236 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL-------LSGGQKQRIAIARAILRDP 288
V N+ + A+ +L L L LSGGQ+QR+AI R ++ +P
Sbjct: 109 VINQRVNQVAE-------VLQL---------AHLLDRKPKALSGGQRQRVAIGRTLVAEP 152
Query: 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH-RLST---------IKAV 338
++ LLDE S LD+ ALR R I H RL ++A+
Sbjct: 153 SVFLLDEPLSNLDA-----------ALRVQ---MRIEISRLHKRLGRTMIYVTHDQVEAM 198
Query: 339 ---DRIVVIDDGRIIEVGNHAELLHK 361
D+IVV+D GR+ +VG EL H
Sbjct: 199 TLADKIVVLDAGRVAQVGKPLELYHY 224
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 9e-20
Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 37/231 (16%)
Query: 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209
L+ V +++ +V I+G +GSGKST +N++ + +G++Y + +T+ + +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE----PAE 78
Query: 210 IGFVG-----QEPQLL-QMDIKSNIMYGC-------------PKDVKNEDIEWAAKQAY- 249
+ G Q PQ L +M + N++ G K + E E ++A+
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKE--EEMVEKAFK 136
Query: 250 VHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 307
+ EF+ L D LSGGQ + + I RA++ +P ++++DE + + H
Sbjct: 137 ILEFL-----KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 308 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAE 357
+ + L+ T ++I HRL + D + V+ +G+II G E
Sbjct: 192 IFNHVLELKAK---GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 84.7 bits (209), Expect = 6e-18
Identities = 55/312 (17%), Positives = 102/312 (32%), Gaps = 73/312 (23%)
Query: 61 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 120
I++ ++ + ++ L A + + + N +
Sbjct: 364 KIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVG 423
Query: 121 EGVKLQRLMG-HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 179
+ G + S Y ++ +LN L ++ I G +G GKST +
Sbjct: 424 PNFDDEEDEGEDLCNCEFSLAYGAKI---LLNKTQLRLKRARRYGICGPNGCGKSTLMRA 480
Query: 180 LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 239
+ +DGFP + + +V + D
Sbjct: 481 IAN--------GQVDGFPTQE------ECRTVYVEHDIDGTHSDTS-------------- 512
Query: 240 DIEWAAKQAYVHEFILSLPCGYETLVDDDL----------------LSGGQKQRIAIARA 283
V +F+ G + + D L LSGG K ++A+ARA
Sbjct: 513 ----------VLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARA 562
Query: 284 ILRDPAILLLDEATSALDSES----EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV- 338
+LR+ ILLLDE T+ LD+ + +Y+ T I I+H + V
Sbjct: 563 VLRNADILLLDEPTNHLDTVNVAWLVNYLN----------TCGITSITISHDSVFLDNVC 612
Query: 339 DRIVVIDDGRII 350
+ I+ + ++
Sbjct: 613 EYIINYEGLKLR 624
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 72.0 bits (176), Expect = 8e-14
Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 14/155 (9%)
Query: 197 PLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 256
P+ +D W+ + ++D+K + G + + ++IE + L
Sbjct: 836 PMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIE-----EHCSMLGLD 890
Query: 257 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 316
+ + LSGGQK ++ +A + P +++LDE T+ LD +S + + AL+
Sbjct: 891 PEIVSHSRIRG--LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS---LGALSKALK 945
Query: 317 NDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 350
+ VI+I H K + + + + DGR+
Sbjct: 946 E---FEGGVIIITHSAEFTKNLTEEVWAVKDGRMT 977
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 9e-07
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 193
N+ F YP P + + + +A++G +G+GKST +N+L P+ G++Y
Sbjct: 676 NMEFQYPGTSK-PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT 732
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 71.3 bits (176), Expect = 2e-14
Identities = 51/240 (21%), Positives = 107/240 (44%), Gaps = 37/240 (15%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
++ +Y + + + + L + ++V ++G +G+GK+T ++ + L G+I +G
Sbjct: 11 SLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67
Query: 196 FPLTDLDIRWL-REKIGFVGQEPQLL-QMDIKSNIMYGC----PKDVKNEDIEWAAKQAY 249
+T+ + R I V + ++ ++ + N+M G K+ D+EW
Sbjct: 68 QDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW------ 121
Query: 250 VHEF--IL----SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303
+ L G LSGG++Q +AI RA++ P +L++DE + L
Sbjct: 122 IFSLFPRLKERLKQLGGT--------LSGGEQQMLAIGRALMSRPKLLMMDEPSLGL--- 170
Query: 304 SEHYVKGVLHALRNDCKTKRTVIVI---AHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 360
+ V V ++ + T++++ A +K V++ G+I+ G +ELL
Sbjct: 171 APILVSEVFEVIQKINQEGTTILLVEQNALG--ALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 2e-13
Identities = 69/237 (29%), Positives = 106/237 (44%), Gaps = 43/237 (18%)
Query: 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIRW 205
IL V L + EV A++G +G+GKST +L Y G+I +DG + +L
Sbjct: 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP-D 75
Query: 206 LREKIG-FVG-QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAY------VHEFILSL 257
R + G F+ Q P + G V + A QA V EF +
Sbjct: 76 ERARKGLFLAFQYPVEVP---------G----VTIANFLRLALQAKLGREVGVAEFWTKV 122
Query: 258 PCGYETL-VDDDLL--------SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 308
E L D+ L SGG+K+R I + ++ +P +LDE S LD ++ V
Sbjct: 123 KKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVV 182
Query: 309 -KGVLHALRNDCKTKRTVIVIAH--R-LSTIKAVDRIVVIDDGRIIEVGNHAELLHK 361
+GV +A+R +VI H R L+ I+ D++ V+ DGR++ G EL +
Sbjct: 183 ARGV-NAMRGP---NFGALVITHYQRILNYIQ-PDKVHVMMDGRVVATGG-PELALE 233
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 1e-12
Identities = 69/253 (27%), Positives = 110/253 (43%), Gaps = 47/253 (18%)
Query: 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIRW 205
IL + L + EV AI+G +GSGKST L YE + G + G L L
Sbjct: 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP-E 92
Query: 206 LREKIG-FVG-QEP---------QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 254
R G F+ Q P LQ + + Y + + +F
Sbjct: 93 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLD------------RFDFQ 140
Query: 255 LSLPCGYETL-VDDDLL--------SGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305
+ L + +DLL SGG+K+R I + + +P + +LDE+ S LD ++
Sbjct: 141 DLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDAL 200
Query: 306 HYVKGVLHALRNDCKTKRTVIVIAH--R-LSTIKAVDRIVVIDDGRIIEVGNH---AELL 359
V +++LR+ KR+ I++ H R L IK D + V+ GRI++ G+ +L
Sbjct: 201 KVVADGVNSLRDG---KRSFIIVTHYQRILDYIKP-DYVHVLYQGRIVKSGDFTLVKQLE 256
Query: 360 HKGRLYAKLVKRQ 372
+G Y L ++Q
Sbjct: 257 EQG--YGWLTEQQ 267
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 5e-11
Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 21/156 (13%)
Query: 203 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE 262
E I V + L + S I ++ +E + Y + +
Sbjct: 180 SGGTEELIEKVKKYKALAREAALSKI-----GELASEIFAEFTEGKYSEVVVRAEENKVR 234
Query: 263 TLVDDD-------LLSGGQKQ------RIAIARAILRDPAILLLDEATSALDSESEHYVK 309
V + LSGG++ R+A++ + + ++L+LDE T LD E +
Sbjct: 235 LFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI 294
Query: 310 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID 345
++ VI+++H A D ++ I
Sbjct: 295 TIMERYLKK---IPQVILVSHDEELKDAADHVIRIS 327
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 8e-10
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 252 EFILSLPCGYETL-VDDDLLSGGQKQRIAIA------RAILRDPAILLLDEATSALDSES 304
E + L +E LSGG++ + +A + + ++L+LDE T LD E
Sbjct: 39 ENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEER 98
Query: 305 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 342
+ ++ VI+++H A D ++
Sbjct: 99 RRKLITIMERYLK---KIPQVILVSHDEELKDAADHVI 133
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 3e-09
Identities = 55/351 (15%), Positives = 97/351 (27%), Gaps = 115/351 (32%)
Query: 70 EQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLM 129
+ + K +L + +D++ + S A +L L S Q E V Q+ +
Sbjct: 39 QDMPKSIL--------SKEEIDHI---IMSKDAVSGTLRLFWTLLSKQ--EEMV--QKFV 83
Query: 130 GHVQFVNISFHY---------PSRPTV-------PILN--------HVC----------- 154
V +N F PS T + N +V
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 155 -LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SDGQIYIDGFPLTDLDIRWLREKI 210
L + + V I G+ GSGK+ + Y+ D +I+ WL +
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF------------WL--NL 189
Query: 211 GFVGQEPQLLQM--DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 268
+L+M + I P D H + L
Sbjct: 190 KNCNSPETVLEMLQKLLYQID---PNWTSRSD----------HSSNIKLRIHSIQAELRR 236
Query: 269 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVI 328
LL + +L+L + +A CK ++
Sbjct: 237 LLKSKPYEN-----------CLLVLLNVQN----------AKAWNAFNLSCKI----LLT 271
Query: 329 AHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG---RLYAKLVKRQTESL 376
+ K V + I + +H+ L L K + + + L
Sbjct: 272 ----TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 3e-04
Identities = 50/264 (18%), Positives = 82/264 (31%), Gaps = 65/264 (24%)
Query: 81 WLIYATWRMVDNLSSLLQSIGATE--KVFQLIDLLPSNQFLSEGVKLQRLMGH-----VQ 133
W ++ + S L + E K+F + + P + + + L + V
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-LSLIWFDVIKSDVM 405
Query: 134 FVNISFH-------YPSRPTVPILN-HVCLTIEANEVVA----IVGLSGSGKSTFVNLLL 181
V H P T+ I + ++ L ++ A IV K+ + L+
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 182 RLYEPSDGQIY---------------IDGFPLTDLDIRWLREKI-------GFVGQEPQL 219
Y D Y + F + LD R+L +KI G
Sbjct: 466 PPYL--DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 220 LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQR 277
LQ +K Y C D K E + A + F+ + DLL R
Sbjct: 524 LQ-QLKFYKPYICDNDPKYERLV----NAILD-FLPK--IEENLICSKYTDLL------R 569
Query: 278 IAIARAILRDPAILLLDEATSALD 301
IA L + +EA +
Sbjct: 570 IA-----LMAEDEAIFEEAHKQVQ 588
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 268 DLLSGGQKQRI------AIARAILRDPA-ILLLDEATSALDSESEHYVKGVLHALRNDCK 320
D LSGG++ + AIA A++ + ++LDE T LD + + +++
Sbjct: 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSI-- 336
Query: 321 TKRTVIVIAHRLSTIKAVDRIVVI 344
+I+I H D I+ +
Sbjct: 337 --PQMIIITHHRELEDVADVIINV 358
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQ---IYIDGF--PLTDLDIRWLREKIGF 212
+VA+ G GSGKST N L + +DGF L+ R L + G
Sbjct: 24 LVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 270 LSGGQK------QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 323
LSGG++ +++A +DE S+LD+E++ + VL L +
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL---NK 336
Query: 324 TVIVIAH 330
++ I H
Sbjct: 337 VIVFITH 343
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} Length = 916 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 33/84 (39%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 270 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALR---NDCKTKR 323
LSGG+ QRI +A + + + +LDE T L E + VLH L N
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGN------ 859
Query: 324 TVIVIAHRLSTIKAVDRIVVIDDG 347
TVIVI H L IK D I ID G
Sbjct: 860 TVIVIEHNLDVIKNADHI--IDLG 881
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Length = 842 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 5e-04
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 270 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALR---NDCKTKR 323
LSGG+ QRI +A + R + +LDE T+ L ++ L L N
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGN------ 784
Query: 324 TVIVIAHRLSTIKAVDRIVVIDDG 347
TVI + H++ + A D + +D G
Sbjct: 785 TVIAVEHKMQVVAASDWV--LDIG 806
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Length = 178 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 6e-04
Identities = 27/201 (13%), Positives = 52/201 (25%), Gaps = 34/201 (16%)
Query: 163 VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM 222
+ I G G GK+T V ++ + + + R I G++
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 223 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282
S + G Y V A
Sbjct: 63 FFTSKKLVG----------------------------SYGVNVQYFEELAIPILERAYRE 94
Query: 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 342
A ++++DE ++ S+ + V + + V+ V I
Sbjct: 95 AKKDRRKVIIIDE-IGKMELFSKKFRDLVRQIMHDP---NVNVVATIPIRDVHPLVKEIR 150
Query: 343 VIDDGRIIEV--GNHAELLHK 361
+ +IE+ N +L
Sbjct: 151 RLPGAVLIELTPENRDVILED 171
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A Length = 972 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 14/84 (16%)
Query: 270 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALR---NDCKTKR 323
LSGG+ QR+ +A + R + +LDE T+ L + + VLH L +
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD------ 899
Query: 324 TVIVIAHRLSTIKAVDRIVVIDDG 347
TV+VI H L IK D I ID G
Sbjct: 900 TVLVIEHNLDVIKTADYI--IDLG 921
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A Length = 392 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 7e-04
Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 9/156 (5%)
Query: 163 VAIVGLSGSGKSTFVN-LLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 221
I+ G+GKS LLLR Y I ID + + + + K+G G
Sbjct: 38 WTILAKPGAGKSFTAKMLLLREYMQGSRVIIID----PEREYKEMCRKLG--GVWINCTG 91
Query: 222 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281
+ K N + + V+ ED E A Q+ + I +L + + D L+ +K + A
Sbjct: 92 GEGKINPLQVRLRPVEEEDEENAVFQSPLALHIQTLRTFFSLYLRD--LTDTEKAALEDA 149
Query: 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 317
+ A + D + ++ VK +
Sbjct: 150 LVEVYKEAGITWDTDPRGVPNDKWPTVKELYEYCVK 185
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} Length = 670 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 7e-04
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 14/84 (16%)
Query: 270 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALR---NDCKTKR 323
LSGG+ QR+ +A + R + +LDE T+ L + + VLH L +
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD------ 597
Query: 324 TVIVIAHRLSTIKAVDRIVVIDDG 347
TV+VI H L IK D I ID G
Sbjct: 598 TVLVIEHNLDVIKTADYI--IDLG 619
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 377 | |||
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 100.0 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.96 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.96 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.96 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.96 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.94 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.94 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.94 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.93 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.93 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.93 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.93 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.92 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.91 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.91 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.91 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.9 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.9 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.9 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.89 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.88 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.88 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.87 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.87 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.86 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.86 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.86 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.85 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.85 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.85 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.84 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.84 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.84 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.84 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.83 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.83 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.82 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.82 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.82 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.82 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.82 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.81 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.81 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.81 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.8 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.8 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.79 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.79 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.78 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.77 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.74 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.74 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.73 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.73 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.71 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.7 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.7 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.67 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.66 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.65 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.65 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.64 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.63 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.63 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.63 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.61 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.58 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.58 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.55 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.54 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.54 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.53 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.52 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.52 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.51 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.49 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.48 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.46 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.42 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.37 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.34 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.3 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.3 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.28 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.26 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.26 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.26 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.25 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.25 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.23 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.18 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 99.16 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 99.15 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 99.14 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.14 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 99.14 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.13 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.12 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.05 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 99.01 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.92 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.91 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.9 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.83 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.83 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.82 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.8 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.76 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.76 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.75 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.74 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.74 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.73 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.73 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.7 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.7 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.67 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.66 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.58 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.53 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.53 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.51 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.49 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.4 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.38 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.37 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.35 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.34 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.32 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.24 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.24 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.16 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 98.15 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.15 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.14 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.11 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 98.08 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 98.08 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.04 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 98.03 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.03 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.03 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.98 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.98 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.97 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.95 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.89 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.88 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.88 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.86 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.8 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.8 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.79 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.77 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.72 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.71 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.71 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.67 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.65 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.64 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.58 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.57 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.56 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.56 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.55 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.53 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.52 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.51 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.49 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.49 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.45 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.42 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 97.41 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.4 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.39 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.38 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.38 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.32 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.31 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 97.29 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.28 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.23 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.22 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.16 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 97.09 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.08 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.05 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 97.04 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 97.04 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 97.01 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.01 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.96 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.96 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.94 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.94 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.9 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.9 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.9 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.89 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.86 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.86 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.86 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.84 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.84 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.82 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.82 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.8 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.79 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.78 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.74 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.74 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.7 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.66 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.65 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.65 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.65 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.61 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.59 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.59 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.54 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.54 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.52 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.52 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.51 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.48 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 96.48 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.47 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.45 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.43 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.39 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.36 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.36 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.34 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.33 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.32 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.31 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.3 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.29 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.27 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.27 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.27 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.27 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.25 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.25 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.24 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.22 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.22 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.22 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.22 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.21 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.21 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.2 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.18 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.17 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.17 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.17 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.16 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.16 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 96.16 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.15 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.14 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.14 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.14 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.13 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.13 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.12 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.11 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.11 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.1 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.08 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 96.08 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.07 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.07 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.07 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.05 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.04 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.04 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.02 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.01 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.0 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 95.98 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 95.97 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.97 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.97 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.97 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 95.96 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 95.96 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 95.96 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.94 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 95.91 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.9 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.89 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 95.88 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.88 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.88 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.87 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 95.86 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.86 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 95.86 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.84 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 95.84 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 95.79 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.79 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 95.79 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 95.76 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 95.75 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 95.75 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.75 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 95.74 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 95.74 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 95.74 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.74 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 95.72 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 95.72 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.71 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 95.71 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 95.7 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.69 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 95.69 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 95.68 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.68 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 95.67 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.67 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.66 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 95.65 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 95.63 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 95.61 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 95.61 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.61 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.61 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.61 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 95.6 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.6 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.6 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 95.57 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 95.57 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.56 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.55 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.54 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.54 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.54 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 95.54 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 95.53 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.52 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 95.52 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.51 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 95.5 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.5 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 95.5 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 95.5 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.49 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.49 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 95.49 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 95.49 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 95.48 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.48 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.47 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.47 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.46 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.45 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.45 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.44 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.42 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 95.41 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.39 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.39 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.38 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.37 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.34 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 95.34 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.33 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.33 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.31 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.3 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.3 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 95.3 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.27 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.27 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 95.27 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 95.27 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.26 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 95.23 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.23 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.22 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 95.22 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 95.21 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.19 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 95.19 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 95.18 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 95.11 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 95.11 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.1 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 95.01 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 94.98 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 94.96 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 94.96 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 94.96 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 94.93 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 94.91 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 94.86 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 94.85 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 94.83 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.7 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 94.69 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 94.62 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 94.6 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 94.48 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.46 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 94.46 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 94.4 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 94.39 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 94.36 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 94.24 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.21 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 94.16 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 94.14 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 94.11 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 94.08 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 94.05 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 94.03 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 94.02 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 93.95 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 93.94 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 93.92 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 93.91 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 93.91 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 92.97 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 93.87 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 93.84 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 93.82 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 93.81 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 93.81 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 93.8 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 93.79 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 93.76 |
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-72 Score=585.43 Aligned_cols=367 Identities=29% Similarity=0.478 Sum_probs=328.0
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|.+..++..+...+..+......+....+..+..++++++|++++..|.+++|.+++++.|...
T Consensus 212 i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~ 291 (587)
T 3qf4_A 212 VRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQ 291 (587)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence 68999999999999999999999888877776666666666666666777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..+.++..+++|+.++++.+++..........++..+.|+++||+|+|+++ ++++|+|+||+|++||
T Consensus 292 ~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge 370 (587)
T 3qf4_A 292 IMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGS 370 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCC
Confidence 999999999999999999999999999999876543221111122234579999999999753 3579999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+||||||||||+++|+|+++|++|+|.+||+++.+++..++|++|+||||+|.+|++||+||+.++.+ ..+++++
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~ 449 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE-DATDDEI 449 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCS-SCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999853 4567888
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.+++.++++.+|.|+++.++. .+||||||||++|||||+++|++||||||||+||+.+++.+.+.++++.
T Consensus 450 ~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--- 526 (587)
T 3qf4_A 450 VEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--- 526 (587)
T ss_dssp HHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS---
T ss_pred HHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC---
Confidence 88999999999999999999998874 6899999999999999999999999999999999999999999999873
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHhh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 374 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 374 (377)
+|+|+|+||||++.+..||||++|++|+|++.|+|+|++++++.|++++..|..
T Consensus 527 -~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~ 580 (587)
T 3qf4_A 527 -KGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYESQFG 580 (587)
T ss_dssp -TTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHHHHHHHHHHC-
T ss_pred -CCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHHhc
Confidence 489999999999999889999999999999999999999999999999988754
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-73 Score=632.81 Aligned_cols=367 Identities=38% Similarity=0.534 Sum_probs=335.7
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|.+..++..+...+.....+...+...++..+..++++|+|++++..|.+|+|.+++++.+...
T Consensus 285 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~ 364 (1321)
T 4f4c_A 285 IRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMM 364 (1321)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 68999999999999999999999888888777777776666667767777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc-cccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEG-VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
+..|+..+...+..++.+..+++|++++++.+|+....... ....+..+.|+++||+|+|++.++.++|+|+||+|++|
T Consensus 365 ~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G 444 (1321)
T 4f4c_A 365 GSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAG 444 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCC
Confidence 99999999999999999999999999999988764332221 21223345799999999998765678999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
|++|||||||||||||+++|+|+|+|++|+|.+||+|+++++..++|++||||+|+|++|++||+|||.||.+ +.++++
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~-~~~~~~ 523 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE-GITREE 523 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT-TCCHHH
T ss_pred cEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcc-cchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999954 678999
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
+.++++.++++++++.+|.|++|.+++ .+|||||||||+||||++++|+|||||||||+||+++++.+.+.|.++.
T Consensus 524 v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-- 601 (1321)
T 4f4c_A 524 MVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-- 601 (1321)
T ss_dssp HHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--
T ss_pred HHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh--
Confidence 999999999999999999999999985 5899999999999999999999999999999999999999999999885
Q ss_pred CCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 319 CKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
+|+|+|+|||++++++.||+|++|++|+|++.|+|+||+++++.|++++..|.
T Consensus 602 --~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 602 --KGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQT 654 (1321)
T ss_dssp --TTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHHH
T ss_pred --CCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhhh
Confidence 48999999999999999999999999999999999999999999999998764
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-73 Score=585.94 Aligned_cols=365 Identities=37% Similarity=0.562 Sum_probs=328.5
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|.+..++..+...+..+..+........+..+..++++++|++++..|.+|+|.+++++.|...
T Consensus 210 i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~ 289 (578)
T 4a82_A 210 ISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLEL 289 (578)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence 58999999999999999999999888888877776676666666667777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..+.++..+++|+.++++.+++..........+...+.|+++||+|+|++. ++++|+|+||++++||
T Consensus 290 ~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~ 368 (578)
T 4a82_A 290 LFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGE 368 (578)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCC
Confidence 999999999999999999999999999999877643221111112233569999999999753 3479999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+..++|++||||||+|.+|++||+||+.++.+ ..+++++
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~ 447 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP-TATDEEV 447 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS-SCCHHHH
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999854 4567888
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.+++.++++.+|.|++|.++. .+||||||||++|||||+++|++||||||||+||+.+++.+.+.++++.
T Consensus 448 ~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--- 524 (578)
T 4a82_A 448 VEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--- 524 (578)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT---
T ss_pred HHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc---
Confidence 89999999999999999999999984 6899999999999999999999999999999999999999999999884
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHH
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 372 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 372 (377)
+++|+|+||||++.++.||+|++|++|++++.|+|+|++++++.|++++..|
T Consensus 525 -~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~q 576 (578)
T 4a82_A 525 -KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQ 576 (578)
T ss_dssp -TTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHTTT
T ss_pred -CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHhh
Confidence 4789999999999998899999999999999999999999999999998765
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-71 Score=575.33 Aligned_cols=365 Identities=35% Similarity=0.528 Sum_probs=327.7
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|.+..++..+...+..+...........+..+..++++++|++++..|.+|+|.+++++.+...
T Consensus 214 i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~ 293 (582)
T 3b5x_A 214 HKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFG 293 (582)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999998888887777776666667667777788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..++.+..+++|+.++++.+++... ...+.++..+.|+++||+|+|+++ ++++|+|+||++++||
T Consensus 294 ~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~--~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~ 370 (582)
T 3b5x_A 294 LMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN--GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGK 370 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCC
Confidence 9999999999999999999999999999988765321 111112223469999999999753 2469999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+..++|++||||||+|.+|++|++||+.++..+..+++++
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 450 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQI 450 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHH
Confidence 99999999999999999999999999999999999998888888999999999999999999999999975234567788
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.++++++++++|.|++|.++. .+||||||||++|||||+++|++||||||||+||+.+++.+.+.|+++.
T Consensus 451 ~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--- 527 (582)
T 3b5x_A 451 EQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ--- 527 (582)
T ss_pred HHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc---
Confidence 89999999999999999999999874 6899999999999999999999999999999999999999999999884
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
+|+|+|+||||++.++.||+|++|++|++++.|++++++++++.|++++..|.
T Consensus 528 -~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b5x_A 528 -KNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQF 580 (582)
T ss_pred -CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHhh
Confidence 37899999999999988999999999999999999999999999999998774
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-73 Score=632.75 Aligned_cols=369 Identities=37% Similarity=0.520 Sum_probs=312.1
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHH--HHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQ--LTKYVLYC 79 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~--l~~~~~~~ 79 (377)
+++||+|+.|+.+.++|.+..+...+...+.....+....+...+..+..++++++|++++..+..+.+. +++++.+.
T Consensus 945 i~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~ 1024 (1321)
T 4f4c_A 945 VRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAI 1024 (1321)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHH
Confidence 5899999999999999999998888877766666666555555555666778889999999888766554 34344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeC
Q 017091 80 EWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEA 159 (377)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~ 159 (377)
.....++..+...+..+..+..+++|++++++.+++..........++..+.|+++||+|+|+++++.+||+|+||+|+|
T Consensus 1025 ~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~ 1104 (1321)
T 4f4c_A 1025 TISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEP 1104 (1321)
T ss_dssp HTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECC
Confidence 44445677777888899999999999999999887644322222233445679999999999876556799999999999
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCC-CCCCCH
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC-PKDVKN 238 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~ 238 (377)
||++|||||||||||||+++|.|+|+|++|+|++||+|+++++.+++|++|+||||+|.||++||+|||.||. +.+.++
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd 1184 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTM 1184 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCH
T ss_pred CCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985 346789
Q ss_pred HHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh
Q 017091 239 EDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 316 (377)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~ 316 (377)
++++++++.+++++++..+|.|++|.+++ .+||||||||+||||||+++|+|||||||||+||+++++.|++.|+++.
T Consensus 1185 ~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~ 1264 (1321)
T 4f4c_A 1185 AQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR 1264 (1321)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999984 6899999999999999999999999999999999999999999998763
Q ss_pred ccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHhh
Q 017091 317 NDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 374 (377)
Q Consensus 317 ~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 374 (377)
+|+|+|+|||+++++..||||+||++|+|+|.|+|+||+++++.|++|++.|..
T Consensus 1265 ----~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A 1265 ----EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMT 1318 (1321)
T ss_dssp ----SSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC------------
T ss_pred ----CCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999999999999998764
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-71 Score=576.00 Aligned_cols=365 Identities=35% Similarity=0.539 Sum_probs=327.6
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|.+..++..+...+..+...+......++..+..++++++|++++..|.+|+|.+++++.|...
T Consensus 214 i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 293 (582)
T 3b60_A 214 HKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIA 293 (582)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999988888877777777666666666777788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..+..+..+++|+.++++.+++... .....++..+.|+++||+|+|+++ ++++|+|+||+|++||
T Consensus 294 ~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~--~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~ 370 (582)
T 3b60_A 294 LMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE--GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGK 370 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC--CCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC--CCCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCC
Confidence 9999999999999999999999999999998765321 111112223469999999999742 1469999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+..++|++||||||+|.+|++|++||+.++..+..+++++
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 450 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQI 450 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHH
Confidence 99999999999999999999999999999999999999888888899999999999999999999999975234567888
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.++++++++++|.|++|.++. .+||||||||++|||||+++|++||||||||+||+.+++.+.+.++++.
T Consensus 451 ~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--- 527 (582)
T 3b60_A 451 EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--- 527 (582)
T ss_dssp HHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH---
T ss_pred HHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh---
Confidence 99999999999999999999999984 6899999999999999999999999999999999999999999999885
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
+|+|+|+||||++.++.||+|++|++|++++.|++++++++++.|++++..|.
T Consensus 528 -~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b60_A 528 -KNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQF 580 (582)
T ss_dssp -TTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHHHTC
T ss_pred -CCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHhc
Confidence 37899999999999988999999999999999999999998889999998774
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-72 Score=582.07 Aligned_cols=365 Identities=32% Similarity=0.553 Sum_probs=328.1
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|.+..++..+...+..+..+........+..+..++++++|++++..|.+++|.+++++.|...
T Consensus 226 i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~ 305 (598)
T 3qf4_B 226 LTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQ 305 (598)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTS
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999888877777666666666666666777788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCc
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge 161 (377)
+..|+..+...+..+..+..+++|+.++++.+++...+ .....++..+.|+++||+|+|+++ +++|+|+||++++||
T Consensus 306 ~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~isl~i~~G~ 382 (598)
T 3qf4_B 306 FTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDP-DAVELREVRGEIEFKNVWFSYDKK--KPVLKDITFHIKPGQ 382 (598)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCS-SCCCCCSCCCCEEEEEEECCSSSS--SCSCCSEEEECCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCCCCCCCCeEEEEEEEEECCCC--CccccceEEEEcCCC
Confidence 99999999999999999999999999999987764321 111122234579999999999753 469999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+..++|++||||||+|.+|++||+||+.++.+ ..+++++
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~ 461 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-GATDEEI 461 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST-TCCTTHH
T ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999853 4566778
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.++++.++++++++.+|.|++|.++. .+||||||||++|||||+++|++||||||||+||+.+++.+.+.++++.
T Consensus 462 ~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--- 538 (598)
T 3qf4_B 462 KEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--- 538 (598)
T ss_dssp HHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH---
T ss_pred HHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc---
Confidence 88999999999999999999999874 6899999999999999999999999999999999999999999999884
Q ss_pred CCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHhh
Q 017091 320 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 374 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 374 (377)
+|+|+|+||||++.++.||+|++|++|++++.|+|++++++++.|++++..|..
T Consensus 539 -~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 539 -EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQYG 592 (598)
T ss_dssp -TTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHHHHHHG
T ss_pred -CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHhh
Confidence 378999999999999889999999999999999999999999999999988754
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-68 Score=591.45 Aligned_cols=367 Identities=42% Similarity=0.615 Sum_probs=327.4
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|.+..++..+...+.....+...+...++..+..++++|+|++++..|.+++|.+++++.+...
T Consensus 257 i~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~ 336 (1284)
T 3g5u_A 257 IRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLI 336 (1284)
T ss_dssp HHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999888887777666666666666667777888999999999999999999988888778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc-ccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL-SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
+..|+..+...+..++.+..+++|++++++.+|+.... ..+...+...+.|+++||+|+|+++++.++|+|+||+|++|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 416 (1284)
T 3g5u_A 337 GAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSG 416 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCC
Confidence 88899999999999999999999999999987754321 11111222345799999999998643457999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 240 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 240 (377)
|++||+||||||||||+++|+|+++|++|+|.+||+++..++..++|++||||||+|.+|++||+|||.++.+ ..++++
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~-~~~~~~ 495 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE-DVTMDE 495 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS-SCCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC-CCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999853 567888
Q ss_pred HHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 241 IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
++++++.++++++++.+|.|++|.++. .+|||||||||+|||||+++|+|||||||||+||+++++.+.+.++.+.
T Consensus 496 ~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-- 573 (1284)
T 3g5u_A 496 IEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-- 573 (1284)
T ss_dssp HHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--
Confidence 999999999999999999999999884 6899999999999999999999999999999999999999999998774
Q ss_pred CCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHh
Q 017091 319 CKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 373 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 373 (377)
+|+|+|+||||++++..||+|++|++|+|++.|+|+++++.++.|.+++..|.
T Consensus 574 --~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 574 --EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626 (1284)
T ss_dssp --TTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC
T ss_pred --CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHhh
Confidence 48899999999999988999999999999999999999999999998886653
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-66 Score=497.53 Aligned_cols=275 Identities=40% Similarity=0.595 Sum_probs=241.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCc
Q 017091 93 LSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSG 172 (377)
Q Consensus 93 ~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsG 172 (377)
...++.+..+++|++++++.+++..........+...+.|+++||+|+|++. .++|+||||+|++||++||+||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~--~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG--RETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTT--CEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCC--CceeeeeeEEEcCCCEEEEECCCCch
Confidence 4466778889999999998765432211111112223469999999999743 46999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHH
Q 017091 173 KSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE 252 (377)
Q Consensus 173 KSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~ 252 (377)
||||+|+|+|+++|++|+|.++|+++..++...+|++||||||++.+|++||+|||.++.. ....++++++++.+++.+
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~-~~~~~~~~~~~~~~~l~~ 171 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV-TAGNDEVEAAAQAAGIHD 171 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST-TCCHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc-cCCHHHHHHHHHHhCcHH
Confidence 9999999999999999999999999999999899999999999999999999999999853 456778889999999999
Q ss_pred HHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 017091 253 FILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 330 (377)
Q Consensus 253 ~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH 330 (377)
+++.+|.|+++.++. .+|||||||||+|||||+++|+|||||||||+||+.++..+++.|+++. +++|+|+|||
T Consensus 172 ~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~----~~~Tvi~itH 247 (306)
T 3nh6_A 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC----ANRTTIVVAH 247 (306)
T ss_dssp HHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH----TTSEEEEECC
T ss_pred HHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc----CCCEEEEEEc
Confidence 999999999999874 5899999999999999999999999999999999999999999999885 3689999999
Q ss_pred CchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHhh
Q 017091 331 RLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 374 (377)
Q Consensus 331 ~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 374 (377)
|++.+..||+|++|++|+|++.|+++++++.++.|+++|..|..
T Consensus 248 ~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 248 RLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQG 291 (306)
T ss_dssp SHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHHC
T ss_pred ChHHHHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHHh
Confidence 99999889999999999999999999999999999999987653
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-66 Score=574.95 Aligned_cols=369 Identities=38% Similarity=0.556 Sum_probs=325.6
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+|+.|+.+.++|.+..+...+...+.....+....+...+..+..++++|+|++++..|.++++.++++..+...
T Consensus 900 i~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~ 979 (1284)
T 3g5u_A 900 FRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVF 979 (1284)
T ss_dssp CTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 57999999999999999999988888777777776666666666667777888999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc-cccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 160 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~G 160 (377)
...|+..+...+..+..+..+++|+.++++.+|+..... .+...+...+.|+++||+|+|+++++.++|+|+||+|++|
T Consensus 980 ~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~G 1059 (1284)
T 3g5u_A 980 GAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKG 1059 (1284)
T ss_dssp HHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCC
Confidence 778888887777788899999999999999877643211 1111122345799999999998643347999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCC-CCCHH
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVKNE 239 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~ 239 (377)
|++||+||||||||||+++|+|+++|++|+|.+||+++...+...+|++|+||||+|.+|++||+|||.++.+. ..+++
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~ 1139 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYE 1139 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998542 35678
Q ss_pred HHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc
Q 017091 240 DIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 317 (377)
Q Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~ 317 (377)
++.++++.++++++++.+|.|++|.+++ .+|||||||||+|||||+++|+|||||||||+||+.+++.+.+.|++..
T Consensus 1140 ~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~- 1218 (1284)
T 3g5u_A 1140 EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR- 1218 (1284)
T ss_dssp HHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-
Confidence 8889999999999999999999999984 5899999999999999999999999999999999999999999998763
Q ss_pred cCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHHHhh
Q 017091 318 DCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 374 (377)
Q Consensus 318 ~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 374 (377)
+|+|+|+||||++++..||||++|++|+|++.|+|++++++++.|++++..|..
T Consensus 1219 ---~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g~y~~l~~~q~~ 1272 (1284)
T 3g5u_A 1219 ---EGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAG 1272 (1284)
T ss_dssp ---SSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSCSHHHHHHHHHC-
T ss_pred ---CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHhh
Confidence 489999999999999889999999999999999999999999999999988754
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-59 Score=434.69 Aligned_cols=236 Identities=48% Similarity=0.748 Sum_probs=213.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+|+|++. ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...++++|
T Consensus 7 ~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 7 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred ceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 58999999999421 23699999999999999999999999999999999999999999999999999887777778889
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p 288 (377)
|||||++.+|+.||+||+.++.+ ....+++.++++.+++.++++.+|.|+++.++. .+|||||||||+|||||+++|
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEeCCCccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999998899999998742 345667778888999999999999899887763 689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc-CHHHHH
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAK 367 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~ 367 (377)
++|||||||++||+.++..+.+.|+++. +|+|||+||||++.+..||+|++|++|++++.|++++++.. .+.|.+
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~----~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 240 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKIC----KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHH----TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHH
Confidence 9999999999999999999999999984 37899999999998877999999999999999999999887 778888
Q ss_pred HHHHH
Q 017091 368 LVKRQ 372 (377)
Q Consensus 368 ~~~~~ 372 (377)
++..+
T Consensus 241 l~~~~ 245 (247)
T 2ff7_A 241 LYQLQ 245 (247)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88755
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-58 Score=436.49 Aligned_cols=241 Identities=38% Similarity=0.667 Sum_probs=210.6
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
+.|+++||+|+|++....++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...++++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 36999999999975212469999999999999999999999999999999999999999999999999977776777888
Q ss_pred eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCC
Q 017091 210 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 210 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~ 287 (377)
|+||||++.+|+.||+||+.++.......+++..+++..++.++++.+|.++++..+ ..+|||||||||+|||||+.+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 999999999998899999998743221214455666677888999999888877665 468999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHH
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 367 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~ 367 (377)
|++||||||||+||+.++..+.+.|+++.++ .|+|||+||||++.+..||+|++|++|++++.|++++++.....|.+
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~--~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~ 252 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEW--ASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRS 252 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTT--TTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhh--cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHH
Confidence 9999999999999999999999999988532 48899999999999877999999999999999999999888788888
Q ss_pred HHHHH
Q 017091 368 LVKRQ 372 (377)
Q Consensus 368 ~~~~~ 372 (377)
++..+
T Consensus 253 ~~~~~ 257 (271)
T 2ixe_A 253 MVEAL 257 (271)
T ss_dssp HHHC-
T ss_pred HHHHh
Confidence 87665
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-58 Score=428.97 Aligned_cols=238 Identities=39% Similarity=0.659 Sum_probs=212.3
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..|+++||+|+|++...+++|+|+||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|+++...+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 359999999999753224699999999999999999999999999999999999987 8999999999987777778889
Q ss_pred eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCC
Q 017091 210 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 210 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~ 287 (377)
|+||||++.+|+.||+||+.++.. ....+++.++++.+++.++++.+|.++++.++ ..+|||||||||+|||||+.+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 173 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD 173 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCcccccCHHHHHhccCC-CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcC
Confidence 999999999998899999998743 33456677788888999999889988887665 468999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHH
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 367 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~ 367 (377)
|++|||||||++||+.++..+.+.|++++ +++|||+||||++.+..||+|++|++|++++.|++++++...+.|.+
T Consensus 174 p~lllLDEPts~LD~~~~~~i~~~l~~l~----~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 249 (260)
T 2ghi_A 174 PKIVIFDEATSSLDSKTEYLFQKAVEDLR----KNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAE 249 (260)
T ss_dssp CSEEEEECCCCTTCHHHHHHHHHHHHHHT----TTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhc----CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHH
Confidence 99999999999999999999999999884 37899999999998877999999999999999999999887778888
Q ss_pred HHHHHh
Q 017091 368 LVKRQT 373 (377)
Q Consensus 368 ~~~~~~ 373 (377)
++..+.
T Consensus 250 ~~~~~~ 255 (260)
T 2ghi_A 250 MWNMQS 255 (260)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 887664
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-59 Score=432.96 Aligned_cols=235 Identities=42% Similarity=0.670 Sum_probs=210.6
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++||+|+|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+|++|+
T Consensus 2 l~~~~l~~~y~~~--~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCCC--CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 7899999999532 46999999999999999999999999999999999999999999999999997766556678899
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~ 289 (377)
||||++.+|+.|++||+.++.......+++.++++.+++.++++++|.|+++..+ ..+|||||||||+|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999998899999998732234566777888888888888999988888766 36899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHH
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 369 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 369 (377)
+|||||||++||+.+++.+.+.|+++. +|+|||+||||++.+..||+|++|++|++++.|++++++.....|.+++
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~----~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 235 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLM----KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHH----TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhc----CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHH
Confidence 999999999999999999999999885 3789999999999887799999999999999999999988877888887
Q ss_pred HHH
Q 017091 370 KRQ 372 (377)
Q Consensus 370 ~~~ 372 (377)
..+
T Consensus 236 ~~~ 238 (243)
T 1mv5_A 236 SEQ 238 (243)
T ss_dssp HCC
T ss_pred Hhh
Confidence 654
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-57 Score=443.51 Aligned_cols=222 Identities=30% Similarity=0.459 Sum_probs=189.2
Q ss_pred ccEEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH---
Q 017091 130 GHVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW--- 205 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~--- 205 (377)
.+|+++||+|+|+++. ..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+..+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 4699999999996431 246999999999999999999999999999999999999999999999999998887654
Q ss_pred HhcceEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 206 LREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 206 ~r~~i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
+|++||||||++.+| ..||+||+.++.. ..... +++.++++.+++.++.++.| .+|||||||||+
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~---------~~LSGGqkQRVa 173 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP---------SNLSGGQKQRVA 173 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT---------TTSCHHHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHH
Confidence 467899999999988 5799999987521 11122 23444555555544444433 689999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHH
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l 358 (377)
|||||+.+|++||||||||+||+.++..+++.|++++++ .|.|||+||||++.+.. ||||++|++|++++.|+++++
T Consensus 174 IArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~--~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRR--LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--SCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999753 48999999999999975 999999999999999999999
Q ss_pred hhcC
Q 017091 359 LHKG 362 (377)
Q Consensus 359 ~~~~ 362 (377)
+.+.
T Consensus 252 ~~~p 255 (366)
T 3tui_C 252 FSHP 255 (366)
T ss_dssp HSSC
T ss_pred HhCC
Confidence 8753
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-57 Score=427.02 Aligned_cols=223 Identities=28% Similarity=0.469 Sum_probs=184.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC--CCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~--~~~~~~r~ 208 (377)
.|+++||+|+|++. .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 59999999999753 359999999999999999999999999999999999999999999999999852 22345678
Q ss_pred ceEEEccCC--cCccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 209 KIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 209 ~i~~v~Q~~--~l~~~tv~eni~~~~~-~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
+||||||+| .+|..||+||+.++.. .....+ ++.++++.+++.++.++. ..+|||||||||+||
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~---------~~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKP---------THCLSFGQKKRVAIA 155 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSB---------GGGSCHHHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC---------cccCCHHHHHHHHHH
Confidence 899999998 4678899999987531 112222 233344444443322222 367999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|||+.+|++||||||||+||+.++..+++.|++++++ .|+|||+||||++.+.. ||||++|++|++++.|++++++.
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~--~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE--LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH--HCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999998632 38899999999999975 99999999999999999999987
Q ss_pred cCHHHH
Q 017091 361 KGRLYA 366 (377)
Q Consensus 361 ~~~~~~ 366 (377)
....+.
T Consensus 234 ~~~~~~ 239 (275)
T 3gfo_A 234 EKEVIR 239 (275)
T ss_dssp HHHHHH
T ss_pred CHHHHH
Confidence 654443
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-57 Score=417.24 Aligned_cols=221 Identities=32% Similarity=0.458 Sum_probs=176.6
Q ss_pred EEEEEEEEEcCCCC-CCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH----
Q 017091 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL---- 206 (377)
Q Consensus 132 i~~~~v~~~y~~~~-~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~---- 206 (377)
|+++||+|+|+++. ..++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 79999999997432 1359999999999999999999999999999999999999999999999999988876543
Q ss_pred hcceEEEccCCcCcc-ccHHHHHhcCCC----CCCCHHHHHHHHHHcCHHHHHHhCCCCccc-ccCCCCCChHHHHHHHH
Q 017091 207 REKIGFVGQEPQLLQ-MDIKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFILSLPCGYET-LVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 207 r~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~LSgGq~QRv~i 280 (377)
+++||||||++.+|+ .||+||+.++.. .....++..+ .+.+.++.+...... ...+.+|||||||||+|
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~i 156 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRK-----RALECLKMAELEERFANHKPNQLSGGQQQRVAI 156 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHH-----HHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHH-----HHHHHHHHCCCChhhhhCChhhCCHHHHHHHHH
Confidence 456999999999884 699999986421 1112221111 122233333221111 12236799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++|||||||++||+.++..+.+.|++++++ .|+|||+||||++.+..||+|++|++|++++.++++++.
T Consensus 157 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~--~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 157 ARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE--DGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence 99999999999999999999999999999999998642 388999999999976669999999999999999887753
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-56 Score=418.71 Aligned_cols=217 Identities=27% Similarity=0.424 Sum_probs=186.3
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ +++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5999999999975 3699999999999999999999999999999999999999999999999999988888888889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC---CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKD---VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
+|++|++.++ ..||+||+.++.... ...+++.++++.+++.++.++ ...+|||||||||+|||||++
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~LSgGq~QRv~iAraL~~ 158 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR---------DYRVLSGGEQQRVQLARVLAQ 158 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS---------BGGGCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcC---------CcccCCHHHHHHHHHHHHHhc
Confidence 9999999874 789999998864211 112334444444443322222 225799999999999999999
Q ss_pred ------CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 287 ------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 287 ------~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
+|++|||||||||||+.++..+.+.|++++++ .++|||+||||++.+.. ||||++|++|++++.|++++++
T Consensus 159 ~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~--~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 159 LWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ--EPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp TCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH--SSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred ccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc--CCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999999998653 36899999999999875 9999999999999999999997
Q ss_pred hc
Q 017091 360 HK 361 (377)
Q Consensus 360 ~~ 361 (377)
+.
T Consensus 237 ~~ 238 (266)
T 4g1u_C 237 NA 238 (266)
T ss_dssp CH
T ss_pred Cc
Confidence 64
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-56 Score=431.69 Aligned_cols=218 Identities=28% Similarity=0.494 Sum_probs=185.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC--CHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--DIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~--~~~~~r~ 208 (377)
.|+++||+|+|++ .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .....++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 5899999999974 3699999999999999999999999999999999999999999999999998321 1223467
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCC-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPKD-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
+||||||++.+| .+||+||+.|+.... .. .+++.++++.+++.++.++.| .+|||||||||+|||
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---------~~LSGGq~QRValAr 151 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP---------HELSGGQQQRAALAR 151 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG---------GGSCHHHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHH
Confidence 899999999998 589999999975321 11 233455566666555544444 679999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|++||||||||+||+..+..+++.+.++.++ .|.|+|+||||++++.. ||||++|++|+|++.|++++++.+
T Consensus 152 AL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~--~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 152 ALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA--NGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--TTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999888877543 48999999999999865 999999999999999999999876
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 230 p 230 (359)
T 3fvq_A 230 P 230 (359)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-55 Score=407.24 Aligned_cols=227 Identities=27% Similarity=0.472 Sum_probs=194.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+|+|++. ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 58999999999742 24699999999999999999999999999999999999999999999998 39
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p 288 (377)
+||||++.++..|++||+.++... ..+...++.+..++.+.+..+|.++++..+ +.+|||||||||+|||||+.+|
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 146 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQL--EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 146 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSCC--CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEcCCCcCCCcCHHHHhhCcccc--CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999988889999999987432 223344556666666777777777666554 4689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHH
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 368 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 368 (377)
++|||||||++||+.++..+.+.|.+..+. .+|+|||+||||++.+..||+|++|++|++++.|+++++++..+.|.++
T Consensus 147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 225 (237)
T 2cbz_A 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGM-LKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEF 225 (237)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHTTSTTST-TTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHH
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHHhh-cCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHH
Confidence 999999999999999999999988532111 2478999999999988779999999999999999999999888889888
Q ss_pred HHHHhh
Q 017091 369 VKRQTE 374 (377)
Q Consensus 369 ~~~~~~ 374 (377)
+..|..
T Consensus 226 ~~~~~~ 231 (237)
T 2cbz_A 226 LRTYAS 231 (237)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 887654
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-56 Score=434.68 Aligned_cols=217 Identities=29% Similarity=0.474 Sum_probs=186.1
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
..|+++||+|+|++ .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++. ++.
T Consensus 2 ~~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ 76 (381)
T 3rlf_A 2 ASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERG 76 (381)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSC
T ss_pred CEEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCC
Confidence 35999999999974 3699999999999999999999999999999999999999999999999999877654 467
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
||||||++.+| .+||+|||.|+.. ..... +++.++++.+++.++.++.| .+|||||||||+||||
T Consensus 77 ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p---------~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRT 147 (381)
T ss_dssp EEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG---------GGSCHHHHHHHHHHHH
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hHCCHHHHHHHHHHHH
Confidence 99999999998 5799999988632 11222 23444555555544443333 6799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|+.+|++||||||||+||+..+..+.+.|++++++ .|.|+|+||||++++.. ||||++|++|++++.|++++++...
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 99999999999999999999999999999998653 48999999999999865 9999999999999999999998753
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-55 Score=433.26 Aligned_cols=226 Identities=25% Similarity=0.426 Sum_probs=205.4
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
.+.|+++||+|+|+++ ..++|+||||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...+...+|+
T Consensus 17 ~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 3569999999999632 2479999999999999999999999999999999999998 9999999999999888888888
Q ss_pred ceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcC
Q 017091 209 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 209 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~ 286 (377)
.||||||++.+|++||+||+.+.. ....+++.++++.+++.++++++|.++++.++. .+|||||||||+|||||++
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEcCCcccCccCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 999999999999999999998542 345677888999999999999999888887764 5699999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
+|++||||||||+||+.++..+++.|+++. .+.|+|+||||++.+..||||++|++|+|++.|++++++++.
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~----~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAF----ADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTT----TTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHh----CCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999998763 478999999999888779999999999999999999998763
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-55 Score=413.71 Aligned_cols=217 Identities=34% Similarity=0.493 Sum_probs=181.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCC--CCCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~--~~~~~~~r~ 208 (377)
+|+++||+|+|++ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ......+++
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 5999999999964 36999999999999999999999999999999999999999999999999985 233445677
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCC--CCCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGC--PKDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~--~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
+||||||++.+| ..||+||+.++. ...... +++.++++.+++.++.++. ..+|||||||||+||
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~---------~~~LSgGqkQRv~lA 171 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY---------PDSLSGGQAQRVAIA 171 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSC---------GGGSCHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCC---------hhhCCHHHHHHHHHH
Confidence 899999999888 469999998742 111122 1233334444433322222 367999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|||+.+|++|||||||++||+.+++.+.+.|+++++ .|+|||+||||++.+.. ||+|++|++|++++.|+++++++
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN---EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999864 37899999999999875 99999999999999999999986
Q ss_pred cC
Q 017091 361 KG 362 (377)
Q Consensus 361 ~~ 362 (377)
..
T Consensus 249 ~~ 250 (263)
T 2olj_A 249 RP 250 (263)
T ss_dssp SC
T ss_pred Cc
Confidence 53
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-55 Score=406.15 Aligned_cols=216 Identities=22% Similarity=0.393 Sum_probs=180.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH-hcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~ 209 (377)
+|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+ +++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4999999999974 369999999999999999999999999999999999999999999999999987766544 456
Q ss_pred eEEEccCCcCcc-ccHHHHHhcCCCCCCCH----HHHHHHHHHcC-HHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKN----EDIEWAAKQAY-VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~----~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
|||+||++.+|. .|++||+.++....... +.+.+.++..+ +.++.++ ...+|||||||||+||||
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~---------~~~~LSgGq~qrv~lAra 153 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQ---------LGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTS---------BSSSSCHHHHHHHHHHHH
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcC---------ChhhCCHHHHHHHHHHHH
Confidence 999999998885 69999998863111111 12223333331 3322222 136799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
|+.+|++|||||||++||+.+++.+.+.|+++++ .|+|||+||||++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 154 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ---EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 9999999999999999999999999999999864 37899999999998764 999999999999999999998764
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-55 Score=409.84 Aligned_cols=217 Identities=30% Similarity=0.459 Sum_probs=183.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC----------
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD---------- 200 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~---------- 200 (377)
+|+++||+++|++ .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4999999999964 369999999999999999999999999999999999999999999999999861
Q ss_pred CCH---HHHhcceEEEccCCcCc-cccHHHHHhcCC--CCCCC----HHHHHHHHHHcCHHHH-HHhCCCCcccccCCCC
Q 017091 201 LDI---RWLREKIGFVGQEPQLL-QMDIKSNIMYGC--PKDVK----NEDIEWAAKQAYVHEF-ILSLPCGYETLVDDDL 269 (377)
Q Consensus 201 ~~~---~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~--~~~~~----~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~ 269 (377)
.+. ..++++||||||++.+| ..||+||+.++. ..... .+++.++++.+++.++ .++.| .+
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---------~~ 153 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP---------VH 153 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG---------GG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCc---------cc
Confidence 333 24567899999999888 569999998741 11112 1234455566665555 44433 67
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCE
Q 017091 270 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 348 (377)
Q Consensus 270 LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~ 348 (377)
|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++++ +|+|||+||||++.+.. ||+|++|++|+
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 230 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE---EGKTMVVVTHEMGFARHVSSHVIFLHQGK 230 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH---TTCCEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999864 38899999999999875 99999999999
Q ss_pred EEEEcChHHHhhcC
Q 017091 349 IIEVGNHAELLHKG 362 (377)
Q Consensus 349 i~~~g~~~~l~~~~ 362 (377)
+++.|+++++++..
T Consensus 231 i~~~g~~~~~~~~~ 244 (262)
T 1b0u_A 231 IEEEGDPEQVFGNP 244 (262)
T ss_dssp EEEEECHHHHHHSC
T ss_pred EEEeCCHHHHHhCc
Confidence 99999999998653
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-55 Score=409.26 Aligned_cols=217 Identities=26% Similarity=0.391 Sum_probs=183.0
Q ss_pred ccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHh
Q 017091 128 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 207 (377)
Q Consensus 128 ~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r 207 (377)
.|+.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....++
T Consensus 12 ~~~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~ 87 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVR 87 (256)
T ss_dssp --CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHH
T ss_pred cCCeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHh
Confidence 5678999999999964 369999999999999999999999999999999999999999999999999875 445667
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
++|||+||++.+| ..|++||+.++.. ..... +++.++++.+++.++.++. ..+|||||||||+||
T Consensus 88 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---------~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 88 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDR---------VSTYSKGMVRKLLIA 158 (256)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSB---------GGGCCHHHHHHHHHH
T ss_pred hcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCC---------hhhCCHHHHHHHHHH
Confidence 8899999999887 4699999987421 01111 2333444544444333322 267999999999999
Q ss_pred HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 282 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 282 ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
|||+.+|++|||||||++||+.++..+.+.|+++++ .|+|||++|||++.+.. ||++++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ---EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999864 37899999999999976 99999999999999999999864
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-54 Score=398.68 Aligned_cols=219 Identities=25% Similarity=0.427 Sum_probs=188.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+|+|+++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +|
T Consensus 6 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 6 EVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 59999999999632 24699999999999999999999999999999999999999999999998 39
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p 288 (377)
+|+||++.+|+.|++||+.++.. .......+.++..++.++++.+|.+.++.++ ..+|||||||||+|||||+++|
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSC--CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEecCCcccCCCHHHHhhccCC--cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999998899999998742 2233445566677888888888877776655 3689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHH-HHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHH
Q 017091 289 AILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 367 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l-~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~ 367 (377)
++|||||||++||+.+++.+.+.+ .++. .++|||++|||++.+..||++++|++|++++.|+++++.+....|.+
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~----~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 225 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLM----ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSS 225 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCT----TTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHHH
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhh----CCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHH
Confidence 999999999999999999998863 4442 37899999999998877999999999999999999999876555655
Q ss_pred HH
Q 017091 368 LV 369 (377)
Q Consensus 368 ~~ 369 (377)
++
T Consensus 226 ~~ 227 (229)
T 2pze_A 226 KL 227 (229)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-55 Score=408.96 Aligned_cols=216 Identities=25% Similarity=0.384 Sum_probs=178.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH-HHhcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~-~~r~~ 209 (377)
+|+++||+|+|++ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. ..+++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 5999999999964 3699999999999999999999999999999999999999999999999999766543 34678
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCC---C-----------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPK---D-----------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 274 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~---~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq 274 (377)
||||||++.+| ..||+||+.++... . ....+. ...+.++++.+...........+|||||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGq 158 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFLKLSHLYDRKAGELSGGQ 158 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHH-----HHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHH-----HHHHHHHHHHcCCchhhCCCchhCCHHH
Confidence 99999999888 57999999886321 1 111111 1112344444432111111236799999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
||||+|||||+.+|++|||||||++||+.+++.+.+.|+++++ .|+|||+||||++.+.. ||+|++|++|++++.|
T Consensus 159 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (257)
T 1g6h_A 159 MKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA---KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235 (257)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999999999999864 38899999999999865 9999999999999999
Q ss_pred ChHH
Q 017091 354 NHAE 357 (377)
Q Consensus 354 ~~~~ 357 (377)
++++
T Consensus 236 ~~~~ 239 (257)
T 1g6h_A 236 RGEE 239 (257)
T ss_dssp ESHH
T ss_pred CHHH
Confidence 9998
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-55 Score=424.46 Aligned_cols=216 Identities=27% Similarity=0.498 Sum_probs=186.0
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 5899999999964 3699999999999999999999999999999999999999999999999999876543 5679
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC-CC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKD-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
|||||++.+| .+||+||+.|+.... .. .+++.++++.+++.++.++.| .+|||||||||+|||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP---------TQLSGGQQQRVALARAL 148 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 9999999998 579999999874321 11 123445555555554444443 67999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
+.+|++||||||||+||+.++..+.+.|+++.++ .|.|+|+||||++++.. ||||++|++|++++.|++++++++.
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE--LGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999999999998643 37899999999999865 9999999999999999999998754
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-55 Score=401.87 Aligned_cols=213 Identities=26% Similarity=0.405 Sum_probs=174.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH---Hh
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~r 207 (377)
+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+... ++
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 4899999999974 36999999999999999999999999999999999999999999999999997766432 33
Q ss_pred -cceEEEccCCcCc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 208 -EKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 208 -~~i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
++|+||||++.+| ..|++||+.++.. ......+.. ..+.+.++.+...........+|||||||||+|||||
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral 155 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK-----ERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARAL 155 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHT
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 6799999999888 5799999987421 111111111 1123334443322111222367999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcC
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~ 354 (377)
+.+|++|||||||++||+.++..+.+.|+++++ +|+|||+||||++.+..||++++|++|++++.|+
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~---~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKINE---GGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 999999999999999999999999999999864 3789999999999886699999999999999885
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-55 Score=425.41 Aligned_cols=216 Identities=33% Similarity=0.514 Sum_probs=182.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 5899999999964 3699999999999999999999999999999999999999999999999999876543 4679
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
|||||++.+| .+||+||+.|+.. ..... +++.++++.+++.++.++. +.+|||||||||+|||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~---------~~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRY---------PWQLSGGQQQRVAIARAL 148 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCC---------GGGSCHHHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCC---------hhhCCHHHHHHHHHHHHH
Confidence 9999999998 5799999988631 11122 2233344444443333222 367999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
+.+|++||||||||+||+..+..+.+.|+++.++ .|.|+|+||||++++.. ||+|++|++|+|++.|++++++++.
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKE--LGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999999998643 37899999999999865 9999999999999999999998754
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-54 Score=423.55 Aligned_cols=218 Identities=30% Similarity=0.506 Sum_probs=181.8
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
|..|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. ++
T Consensus 9 M~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r 83 (372)
T 1v43_A 9 MVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DR 83 (372)
T ss_dssp CCCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GG
T ss_pred eeeEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hC
Confidence 446999999999964 3699999999999999999999999999999999999999999999999999876543 46
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
+||||||++.+| .+||+||+.|+... .... +++.++++.+++.++.++.| .+|||||||||+|||
T Consensus 84 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRvalAr 154 (372)
T 1v43_A 84 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP---------AQLSGGQRQRVAVAR 154 (372)
T ss_dssp TEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT---------TTCCSSCHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHH
Confidence 799999999988 57999999997532 1222 23344555555544444433 689999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|++||||||||+||+..+..+.+.|++++++ .|.|+|+||||++++.. ||||++|++|++++.|++++++.+
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK--LKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998643 37899999999999864 999999999999999999999875
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 233 p 233 (372)
T 1v43_A 233 P 233 (372)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-54 Score=421.71 Aligned_cols=216 Identities=28% Similarity=0.504 Sum_probs=184.5
Q ss_pred cEEEEEEEEEc-CCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 131 HVQFVNISFHY-PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 131 ~i~~~~v~~~y-~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
.|+++||+|+| ++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .+++
T Consensus 14 ~l~~~~l~~~y~g~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 14 TIEFVGVEKIYPGG---ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEECCTTS---TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred eEEEEEEEEEEcCC---CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 59999999999 53 369999999999999999999999999999999999999999999999999976553 3678
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
||||||++.+| .+||+||+.|+.. .... .+++.++++.+++.++.++.| .+|||||||||+||||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---------~~LSGGq~QRvalArA 159 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP---------HELSGGQQQRVALARA 159 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc---------ccCCHHHHHHHHHHHH
Confidence 99999999998 5799999988531 1112 223444555555544444333 6799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|+.+|++||||||||+||+.++..+.+.|+++.++ .|.|+|+||||++++.. ||||++|++|+|++.|++++++++.
T Consensus 160 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDE--MGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999998643 37899999999999865 9999999999999999999998753
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-55 Score=424.12 Aligned_cols=218 Identities=30% Similarity=0.476 Sum_probs=184.1
Q ss_pred cEEEEEEEEEcCCCCCCC--ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC---HHH
Q 017091 131 HVQFVNISFHYPSRPTVP--ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~--vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~---~~~ 205 (377)
+|+++||+|+|++ .+ +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 5899999999964 36 999999999999999999999999999999999999999999999999986411 122
Q ss_pred HhcceEEEccCCcCc-cccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 206 LREKIGFVGQEPQLL-QMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 206 ~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
.+++||||||++.+| .+||+||+.|+... .... +++.++++.+++.++.++.| .+|||||||||+
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~---------~~LSGGq~QRva 150 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP---------RELSGAQQQRVA 150 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHH
Confidence 467899999999998 57999999987432 1122 23344455555544433333 679999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHH
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l 358 (377)
|||||+.+|++||||||||+||+.++..+.+.|+++.++ .|.|+|+||||++++.. ||||++|++|++++.|+++++
T Consensus 151 lAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR--LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHH--HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999998643 37899999999999865 999999999999999999999
Q ss_pred hhcC
Q 017091 359 LHKG 362 (377)
Q Consensus 359 ~~~~ 362 (377)
+++.
T Consensus 229 ~~~p 232 (353)
T 1oxx_K 229 YDNP 232 (353)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 8754
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-54 Score=405.01 Aligned_cols=216 Identities=30% Similarity=0.488 Sum_probs=185.3
Q ss_pred cEEEEEEEEEcCCCCC--CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~--~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
+|+++||+|+|+.+.. +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++... .+++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhh
Confidence 4899999999962111 3699999999999999999999999999999999999999999999999998532 5677
Q ss_pred ceEEEccCC--cCccccHHHHHhcCCCC----CCCHHHHHHHHHHcCHH--HHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 209 KIGFVGQEP--QLLQMDIKSNIMYGCPK----DVKNEDIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 209 ~i~~v~Q~~--~l~~~tv~eni~~~~~~----~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+||||||++ .++..|++||+.++... ....+++.++++.+++. ++.++.| .+|||||||||+|
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---------~~LSgGq~qRv~l 149 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP---------FFLSGGEKRRVAI 149 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG---------GGSCHHHHHHHHH
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh---------hhCCHHHHHHHHH
Confidence 899999996 45678999999886321 12234566677777776 6555544 5799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++|||||||++||+.++..+.+.|+++++ .|+|||+||||++.+.. ||++++|++|++++.|++++++
T Consensus 150 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 226 (266)
T 2yz2_A 150 ASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT---LGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 226 (266)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999864 37899999999999875 9999999999999999999987
Q ss_pred hc
Q 017091 360 HK 361 (377)
Q Consensus 360 ~~ 361 (377)
..
T Consensus 227 ~~ 228 (266)
T 2yz2_A 227 EK 228 (266)
T ss_dssp HH
T ss_pred cC
Confidence 54
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-54 Score=410.71 Aligned_cols=216 Identities=25% Similarity=0.388 Sum_probs=179.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCC--CCCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~--~~~~~~~r~ 208 (377)
.|+++||+|+|++ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..+...+++
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999974 36999999999999999999999999999999999999999999999999987 666667788
Q ss_pred ceEEEccCCcC-cc--ccHHHHHhcCCCC------CCCH---HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH
Q 017091 209 KIGFVGQEPQL-LQ--MDIKSNIMYGCPK------DVKN---EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 276 (377)
Q Consensus 209 ~i~~v~Q~~~l-~~--~tv~eni~~~~~~------~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q 276 (377)
+||||||++.+ |. .||+||+.++... .... +++.++++.+++.++.++ ...+|||||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~LSgGqkq 168 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQ---------YIGYLSTGEKQ 168 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTS---------BGGGSCHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcC---------ChhhCCHHHHH
Confidence 89999999864 43 4999999986321 0111 122233333333222211 23679999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEE--EEEecCchhHHh-cCeEEEEeCCEEEEEc
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV--IVIAHRLSTIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tv--i~itH~l~~~~~-~d~v~~l~~G~i~~~g 353 (377)
||+|||||+.+|++|||||||++||+.+++.+.+.|++++++ |+|| |+||||++.+.. ||+|++|++|++++.|
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~---g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS---YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH---CTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC---CCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999998642 7899 999999999864 9999999999999999
Q ss_pred ChHHHhhc
Q 017091 354 NHAELLHK 361 (377)
Q Consensus 354 ~~~~l~~~ 361 (377)
+++++.+.
T Consensus 246 ~~~~~~~~ 253 (279)
T 2ihy_A 246 AVEDILTS 253 (279)
T ss_dssp EHHHHCSH
T ss_pred CHHHHhcc
Confidence 99998754
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-54 Score=424.33 Aligned_cols=216 Identities=30% Similarity=0.454 Sum_probs=183.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC------CCHH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD------LDIR 204 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~------~~~~ 204 (377)
+|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .++
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 5899999999964 369999999999999999999999999999999999999999999999999865 443
Q ss_pred HHhcceEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 017091 205 WLREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv 278 (377)
.+++||||||++.+| .+||+||+.|+.. ..... +++.++++.+++.++.++.| .+|||||||||
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRv 148 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP---------RELSGGQRQRV 148 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG---------GGSCHHHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc---------ccCCHHHHHHH
Confidence 256799999999998 5899999988531 11122 23444555555544444333 67999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHH
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~ 357 (377)
+|||||+.+|++||||||||+||+..+..+.+.|+++.++ .|.|+|+||||++++.. ||+|++|++|++++.|++++
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ--LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999998643 37899999999999865 99999999999999999999
Q ss_pred HhhcC
Q 017091 358 LLHKG 362 (377)
Q Consensus 358 l~~~~ 362 (377)
++++.
T Consensus 227 l~~~p 231 (372)
T 1g29_1 227 VYDKP 231 (372)
T ss_dssp HHHSC
T ss_pred HHhCc
Confidence 98753
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-54 Score=418.19 Aligned_cols=214 Identities=33% Similarity=0.552 Sum_probs=184.3
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++||+|+|++ . +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .+++||
T Consensus 2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 789999999963 4 9999999999999999999999999999999999999999999999999976544 356799
Q ss_pred EEccCCcCc-cccHHHHHhcCCCC--CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPK--DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
||||++.+| .+||+||+.|+... ....+++.++++..++.++.++.| .+|||||||||+|||||+.+|
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~---------~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP---------LTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG---------GGSCHHHHHHHHHHHHTTSCC
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHHHHHcCC
Confidence 999999998 57999999885310 111244555666665544444433 679999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
++||||||||+||+.+++.+.+.|++++++ .|.|+|+||||++++.. ||||++|++|++++.|++++++++.
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~--~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSVLHKK--NKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999998653 48899999999998865 9999999999999999999998753
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-54 Score=398.15 Aligned_cols=215 Identities=27% Similarity=0.419 Sum_probs=177.1
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++||+++|++ +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ..+++||
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 789999999952 59999999999 999999999999999999999999999999999999986533 2467899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCE
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 290 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~i 290 (377)
||||++.+| ..|++||+.++.... .... . ...+.+.++.+...........+|||||||||+|||||+.+|++
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~-~~~~--~---~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 147 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNV-ERVE--R---DRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRL 147 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTS-CHHH--H---HHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHc-CCch--H---HHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 999999888 469999999864211 1111 0 11123444444322111222367999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 291 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 291 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|||||||++||+.+++.+.+.|++++++ .|+|||++|||++.+.. ||++++|++|++++.|+++++++..
T Consensus 148 llLDEPts~LD~~~~~~~~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 148 LLLDEPLSAVDLKTKGVLMEELRFVQRE--FDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp BEEESTTSSCCHHHHHHHHHHHHHHHHH--HTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 9999999999999999999999998542 37899999999998865 9999999999999999999997654
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=396.73 Aligned_cols=210 Identities=21% Similarity=0.325 Sum_probs=182.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+++||+|+ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++...+...++++|
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 4899999986 3899999999999999999999999999999999999999 9999999999777777778889
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 289 (377)
+|+||++.+| ..|++||+.++.......+++.++++..++.++.++. ..+|||||||||+|||||+.+|+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgGq~qrv~lAraL~~~p~ 146 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS---------TNQLSGGEWQRVRLAAVVLQITP 146 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSB---------GGGCCHHHHHHHHHHHHHHHHCT
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCC---------hhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999887 5799999998632222244555666666654443332 25799999999999999999999
Q ss_pred -------EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChHHHhh
Q 017091 290 -------ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 290 -------illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
+|||||||++||+.+++.+.+.|+++.+ +|+|||++|||++.+. .||++++|++|++++.|+++++.+
T Consensus 147 ~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 147 QANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ---QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred cCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999864 3789999999999985 599999999999999999999875
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-53 Score=397.02 Aligned_cols=212 Identities=24% Similarity=0.329 Sum_probs=169.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC--CCCCCCeEEECCEeCCCCCHHHH-h
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-R 207 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--~~p~~G~I~i~g~~i~~~~~~~~-r 207 (377)
+|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+.... +
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 5899999999964 3699999999999999999999999999999999999 89999999999999987766544 4
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCC----CCCCH----HHHHHHHHHcCH-HHHHHhCCCCcccccCCCC-CChHHHH
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCP----KDVKN----EDIEWAAKQAYV-HEFILSLPCGYETLVDDDL-LSGGQKQ 276 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~----~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~-LSgGq~Q 276 (377)
..++|+||++.+| ..|++||+.++.. ..... +++.++++..++ .++.+ ....+ |||||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~~~LSgGqkQ 150 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS---------RYLNEGFSGGEKK 150 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG---------SBTTCC----HHH
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhc---------CCcccCCCHHHHH
Confidence 5699999999988 4799999976421 00111 122223333332 11111 12356 9999999
Q ss_pred HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh--cCeEEEEeCCEEEEEcC
Q 017091 277 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~--~d~v~~l~~G~i~~~g~ 354 (377)
||+|||||+.+|++|||||||++||+.+++.+.+.|+++++ .|+|||+||||++.+.. ||+|++|++|++++.|+
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG---PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGG 227 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS---TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeC
Confidence 99999999999999999999999999999999999999843 48899999999999875 59999999999999999
Q ss_pred hHH
Q 017091 355 HAE 357 (377)
Q Consensus 355 ~~~ 357 (377)
++.
T Consensus 228 ~~~ 230 (250)
T 2d2e_A 228 PEL 230 (250)
T ss_dssp HHH
T ss_pred HHH
Confidence 873
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-52 Score=394.81 Aligned_cols=219 Identities=25% Similarity=0.311 Sum_probs=176.3
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC--CCCCCCeEEECCEeCCCCCHHHH-
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL- 206 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--~~p~~G~I~i~g~~i~~~~~~~~- 206 (377)
.+|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+...+
T Consensus 19 ~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 95 (267)
T 2zu0_C 19 HMLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95 (267)
T ss_dssp -CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred ceEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence 35999999999964 3699999999999999999999999999999999999 57999999999999877665544
Q ss_pred hcceEEEccCCcCc-cccHHHHHhcCC--------CCCCCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCC-CCChHHH
Q 017091 207 REKIGFVGQEPQLL-QMDIKSNIMYGC--------PKDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDD-LLSGGQK 275 (377)
Q Consensus 207 r~~i~~v~Q~~~l~-~~tv~eni~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~-~LSgGq~ 275 (377)
+..|+|+||++.+| ..|+.||+.++. ......++.. ..+.++++.+.... ....... +||||||
T Consensus 96 ~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 96 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQ-----DLMEEKIALLKMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp HHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHH-----HHHHHHHHHTTCCTTTTTSBTTTTCCHHHH
T ss_pred hCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHH-----HHHHHHHHHcCCChhHhcCCcccCCCHHHH
Confidence 44699999999888 579999986531 0011121111 12334455443210 1111223 5999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh--cCeEEEEeCCEEEEEc
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~--~d~v~~l~~G~i~~~g 353 (377)
|||+|||||+.+|++|||||||++||+.+++.+.+.|+++++ .|+|||+||||++.+.. ||+|++|++|++++.|
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~---~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g 247 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD---GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC---SSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999998843 48899999999999864 8999999999999999
Q ss_pred ChHHHh
Q 017091 354 NHAELL 359 (377)
Q Consensus 354 ~~~~l~ 359 (377)
+++++.
T Consensus 248 ~~~~~~ 253 (267)
T 2zu0_C 248 DFTLVK 253 (267)
T ss_dssp CTTHHH
T ss_pred CHHHHh
Confidence 998764
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-52 Score=387.91 Aligned_cols=204 Identities=26% Similarity=0.400 Sum_probs=170.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+++||+++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|. ++++|
T Consensus 4 ~l~i~~l~~~y~~~--~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETTT--TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCCC--CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 48999999999721 3699999999999999999999999999999999999999999998 24579
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCC------CCH---HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKD------VKN---EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~------~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
|||||++.++ ..||+||+.++.... ... +++.++++..++.++.++. ..+|||||||||+|
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgGq~qrv~l 139 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE---------FTSLSGGQRQLILI 139 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSB---------GGGSCHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCC---------hhhCCHHHHHHHHH
Confidence 9999999887 689999998863110 111 2233444444443332222 36799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++|||||||++||+.++..+.+.|++++++ .|+|||++|||++.+. .||++++|++|+ ++.|++++++
T Consensus 140 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 140 ARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQS--QNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHT--SCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 99999999999999999999999999999999998642 3789999999999986 499999999999 9999999987
Q ss_pred hc
Q 017091 360 HK 361 (377)
Q Consensus 360 ~~ 361 (377)
+.
T Consensus 217 ~~ 218 (253)
T 2nq2_C 217 TS 218 (253)
T ss_dssp CH
T ss_pred Cc
Confidence 54
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-51 Score=388.47 Aligned_cols=235 Identities=25% Similarity=0.389 Sum_probs=179.2
Q ss_pred HHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 105 KVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 105 rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
|+.++++.+++... .. . .....+.|+++||+|.+ +++|+|+||+|++||+++|+||||||||||+|+|+|++
T Consensus 17 ~~~~~~~~~~~~~~-~~-~-~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 17 GFGELFEKAKQNNN-NR-K-TSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp HHHHHHHHCC--------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred HHHHHhcccccccc-cc-c-ccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 56666666543221 11 1 11122359999999864 25999999999999999999999999999999999999
Q ss_pred CCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccc
Q 017091 185 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 264 (377)
Q Consensus 185 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 264 (377)
+|++|+|.++| +|+|+||++.+|+.|++||+. +.. .........++..++.++++.+|.++++.
T Consensus 89 ~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~enl~-~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 152 (290)
T 2bbs_A 89 EPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENII-GVS--YDEYRYRSVIKACQLEEDISKFAEKDNIV 152 (290)
T ss_dssp CEEEEEEECCS-------------CEEEECSSCCCCSSBHHHHHH-TTC--CCHHHHHHHHHHTTCHHHHHTSTTGGGCB
T ss_pred CCCCcEEEECC-------------EEEEEeCCCccCcccHHHHhh-Ccc--cchHHHHHHHHHhChHHHHHhccccccch
Confidence 99999999988 499999999999889999998 532 22334455666778888888888777766
Q ss_pred cC--CCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHH-HHhhccCCCCeEEEEEecCchhHHhcCeE
Q 017091 265 VD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 265 ~~--~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l-~~l~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
++ ..+||||||||++|||||+.+|++|||||||++||+.++..+.+.+ +++ ..|+|||+||||++.+..||++
T Consensus 153 ~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~----~~~~tviivtHd~~~~~~~d~i 228 (290)
T 2bbs_A 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL----MANKTRILVTSKMEHLKKADKI 228 (290)
T ss_dssp C----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCC----TTTSEEEEECCCHHHHHHSSEE
T ss_pred hcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHh----hCCCEEEEEecCHHHHHcCCEE
Confidence 55 3689999999999999999999999999999999999999998864 344 2478999999999988779999
Q ss_pred EEEeCCEEEEEcChHHHhhcCHHHHH
Q 017091 342 VVIDDGRIIEVGNHAELLHKGRLYAK 367 (377)
Q Consensus 342 ~~l~~G~i~~~g~~~~l~~~~~~~~~ 367 (377)
++|++|++++.|++++++.....|.+
T Consensus 229 ~~l~~G~i~~~g~~~~l~~~~~~~~~ 254 (290)
T 2bbs_A 229 LILHEGSSYFYGTFSELQNLRPDFSS 254 (290)
T ss_dssp EEEETTEEEEEECHHHHHHHCHHHHH
T ss_pred EEEECCeEEEeCCHHHHhhhcHHHHH
Confidence 99999999999999999764444443
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=386.59 Aligned_cols=209 Identities=21% Similarity=0.296 Sum_probs=175.2
Q ss_pred EEEEEEEEEcCCC-CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 132 VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 132 i~~~~v~~~y~~~-~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
|+++||+++|++. ..+++|+|+||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++... .. +++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 00369999999999 9999999999999999999999999 9999999999998653 22 6789
Q ss_pred E-EEccCCcCccccHHHHHhcCCC-CCCCHHHHHHHHHHcCHH-HHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 211 G-FVGQEPQLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 211 ~-~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
+ |+||++.+ ..|++||+.++.. .....+++.++++..++. +..++. ..+||||||||++|||||+.+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~~LSgGqkqRv~lAraL~~~ 146 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRK---------LYKLSAGQSVLVRTSLALASQ 146 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSB---------GGGSCHHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCC---------hhhCCHHHHHHHHHHHHHHhC
Confidence 9 99999988 8999999987421 122344455555554443 322222 367999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cC-eEEEEeCCEEEEEcChHHHhhc
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VD-RIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d-~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
|++|||||||++||+.+++.+.+.|+++. . |||++|||++.+.. || ++++|++|++++.|+++++.+.
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~L~~~~-----~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 147 PEIVGLDEPFENVDAARRHVISRYIKEYG-----K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHSC-----S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHhc-----C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999872 3 99999999999865 99 9999999999999999998753
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-51 Score=369.94 Aligned_cols=196 Identities=23% Similarity=0.371 Sum_probs=161.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .+++.|
T Consensus 10 ~l~~~~ls~~y~~----~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESSS----EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeCC----eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 5999999999963 5999999999999999999999999999999999999999999999999875 256789
Q ss_pred EEEccCCcCcc-ccHHHHHhcCCC--C-CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 211 GFVGQEPQLLQ-MDIKSNIMYGCP--K-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 211 ~~v~Q~~~l~~-~tv~eni~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
+||||++.+|. .|++||+.++.. . ....+++.++++..++.+. .....+||||||||++|||||+.
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~LSgGqkqrv~laraL~~ 150 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL----------KKKLGELSQGTIRRVQLASTLLV 150 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT----------TSBGGGSCHHHHHHHHHHHHTTS
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC----------CCChhhCCHHHHHHHHHHHHHHh
Confidence 99999998884 699999987421 0 1123344444444433221 12236799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
+|++|||||||++||+.++..+.+.|+++++ .|+|||++|||++.+.. ||+|+++ +|+|
T Consensus 151 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~---~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 151 NAEIYVLDDPVVAIDEDSKHKVLKSILEILK---EKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHHH---HHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999864 27899999999999876 7887755 4554
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-43 Score=361.97 Aligned_cols=203 Identities=27% Similarity=0.315 Sum_probs=164.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++++|+++.|++ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+ +.+|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 5999999999964 3799999999999999999999999999999999999999999976 1369
Q ss_pred EEEccCCcC-ccccHHHHHhcC-CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQL-LQMDIKSNIMYG-CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l-~~~tv~eni~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
||+||++.+ +..||.||+... .......+.+.++++..++.++. .....+|||||||||+|||||+.+|
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSGGe~QRv~iAraL~~~p 490 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY---------DRNVEDLSGGELQRVAIAATLLRDA 490 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTT---------TSBGGGCCHHHHHHHHHHHHHTSCC
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHh---------cCChhhCCHHHHHHHHHHHHHHhCC
Confidence 999999876 478999998652 00000112222233332222111 1123579999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC--CEEEEEcChHHHhhc
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLHK 361 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~--G~i~~~g~~~~l~~~ 361 (377)
++|||||||++||+.++..+.+.|+++.++ .|.|||+||||++++.. ||||++|++ |++...|+++++++.
T Consensus 491 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 491 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 999999999999999999999999998542 47899999999999975 999999986 888889999888753
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-43 Score=358.61 Aligned_cols=202 Identities=28% Similarity=0.317 Sum_probs=162.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++++|+++.|++ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+ ...|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 5999999999963 3799999999999999999999999999999999999999999975 1359
Q ss_pred EEEccCCcC-ccccHHHHHhcC-CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQL-LQMDIKSNIMYG-CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l-~~~tv~eni~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
||+||++.. +..||.|++... .......+.+. ++++.+...........+|||||||||+|||||+.+|
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~---------~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p 420 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKT---------ELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDA 420 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHH---------HTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCC
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHH---------HHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 999999876 478999987642 00000111222 2233322111111123679999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC--CEEEEEcChHHHhh
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLH 360 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~--G~i~~~g~~~~l~~ 360 (377)
++|||||||++||+.++..+.+.|+++.++ .|.|||+||||++++.. ||||++|++ |+++..|++++++.
T Consensus 421 ~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~--~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 421 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999998532 37899999999999875 999999986 78888999988875
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=353.05 Aligned_cols=202 Identities=20% Similarity=0.269 Sum_probs=163.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++++|+++.|++ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ ..+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 5899999999964 378999999999999999999999999999999999999999998764 358
Q ss_pred EEEccCCcC-ccccHHHHHhcCCCCC--CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 211 GFVGQEPQL-LQMDIKSNIMYGCPKD--VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 211 ~~v~Q~~~l-~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
+|+||+... +..||++|+.+..... .....+.++++..++.++.++. ..+|||||||||+|||||+.+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSGGq~QRv~iAraL~~~ 403 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESN---------VNDLSGGELQKLYIAATLAKE 403 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSB---------GGGCCHHHHHHHHHHHHHHSC
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCC---------hhhCCHHHHHHHHHHHHHHcC
Confidence 999999765 4789999997632111 1122233344444443322222 267999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC--CEEEEEcChHHHh
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELL 359 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~--G~i~~~g~~~~l~ 359 (377)
|++|||||||++||+.++..+.+.|+++.++ .|.|||+||||++++.. ||||++|++ |.+...+++.++.
T Consensus 404 p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~--~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 404 ADLYVLDQPSSYLDVEERYIVAKAIKRVTRE--RKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999998653 48899999999999976 999999986 5666667766554
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-41 Score=346.94 Aligned_cols=198 Identities=25% Similarity=0.265 Sum_probs=156.4
Q ss_pred cEEE--------EEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeE---------EE
Q 017091 131 HVQF--------VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI---------YI 193 (377)
Q Consensus 131 ~i~~--------~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I---------~i 193 (377)
.|++ +||+++|++. ..+|+|+| +|++||+++|+||||||||||+|+|+|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 4888 8999999753 24899999 999999999999999999999999999999999996 45
Q ss_pred CCEeCCCCCHH--HHhcceEEEccCCcC----ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC
Q 017091 194 DGFPLTDLDIR--WLREKIGFVGQEPQL----LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 267 (377)
Q Consensus 194 ~g~~i~~~~~~--~~r~~i~~v~Q~~~l----~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 267 (377)
+|.++...... ..+..+++++|.... +..|+.||+.... ..+++.++++..++.+..++. .
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~----~~~~~~~~L~~lgL~~~~~~~---------~ 226 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD----EVGKFEEVVKELELENVLDRE---------L 226 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC----CSSCHHHHHHHTTCTTGGGSB---------G
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH----HHHHHHHHHHHcCCCchhCCC---------h
Confidence 56544221111 123458899987533 3459999987521 122344555555554333332 2
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC
Q 017091 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 346 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~ 346 (377)
.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++.+ .|.|||+||||++.+.. ||+|++|++
T Consensus 227 ~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~---~g~tvIivsHdl~~~~~~adri~vl~~ 303 (607)
T 3bk7_A 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN---EGKAVLVVEHDLAVLDYLSDVIHVVYG 303 (607)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEES
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEecChHHHHhhCCEEEEECC
Confidence 67999999999999999999999999999999999999999999999864 38899999999999875 999999986
Q ss_pred C
Q 017091 347 G 347 (377)
Q Consensus 347 G 347 (377)
+
T Consensus 304 ~ 304 (607)
T 3bk7_A 304 E 304 (607)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=343.87 Aligned_cols=202 Identities=22% Similarity=0.341 Sum_probs=162.2
Q ss_pred EEEEEEcCCCCCCCceeeeeEEEeCC-----cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcc
Q 017091 135 VNISFHYPSRPTVPILNHVCLTIEAN-----EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 209 (377)
Q Consensus 135 ~~v~~~y~~~~~~~vL~~isl~i~~G-----e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 209 (377)
++++++|++. ..+++++||++.+| |+++|+||||||||||+|+|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 5677888742 35899999999999 7899999999999999999999999999962 11 246
Q ss_pred eEEEccCCcC-ccccHHHHHhcCCCCC-CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 210 IGFVGQEPQL-LQMDIKSNIMYGCPKD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 210 i~~v~Q~~~l-~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
++|+||+... |..|+++|+....... ...+...++++..++.++.++ ...+|||||||||+|||||+.+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~---------~~~~LSGGqkQRv~iAraL~~~ 485 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQ---------EVQHLSGGELQRVAIVLALGIP 485 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSS---------BSSSCCHHHHHHHHHHHHTTSC
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcC---------ChhhCCHHHHHHHHHHHHHHhC
Confidence 9999999754 5789999986432211 123333334444443322222 2367999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeC--CEEEEEcChHHHhhcC
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLHKG 362 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~--G~i~~~g~~~~l~~~~ 362 (377)
|++|||||||+|||+.++..+.+.|+++.++ .|.|||+||||++++.. ||||++|++ |+++..|+|+++++..
T Consensus 486 p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~--~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~ 561 (608)
T 3j16_B 486 ADIYLIDEPSAYLDSEQRIICSKVIRRFILH--NKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGC 561 (608)
T ss_dssp CSEEEECCTTTTCCHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhhh
Confidence 9999999999999999999999999998542 48899999999999976 999999996 9999999999998753
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-40 Score=352.68 Aligned_cols=197 Identities=26% Similarity=0.428 Sum_probs=147.9
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+|+|++. .+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. .+|
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 59999999999753 246999999999999999999999999999999999999999999999862 136
Q ss_pred EEEccCCcC-----ccccHHHHHh--------------------------------------------------------
Q 017091 211 GFVGQEPQL-----LQMDIKSNIM-------------------------------------------------------- 229 (377)
Q Consensus 211 ~~v~Q~~~l-----~~~tv~eni~-------------------------------------------------------- 229 (377)
+|++|++.. ...|+.+++.
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 666665421 1234444432
Q ss_pred ----------cCC----------------------------------------CCCCCHHHHHHHHHHcCHHHHHHhCCC
Q 017091 230 ----------YGC----------------------------------------PKDVKNEDIEWAAKQAYVHEFILSLPC 259 (377)
Q Consensus 230 ----------~~~----------------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~ 259 (377)
++. ......+++ .+.++.+..
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i---------~~~Le~lGL 889 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEI---------EEHCSMLGL 889 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHH---------HHHHHHTTC
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHH---------HHHHHHcCC
Confidence 110 000011122 333343322
Q ss_pred Ccc--cccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh
Q 017091 260 GYE--TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 337 (377)
Q Consensus 260 ~~~--~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~ 337 (377)
... ......+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++ +.|||+||||++++..
T Consensus 890 ~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~------g~tVIiISHD~e~v~~ 963 (986)
T 2iw3_A 890 DPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF------EGGVIIITHSAEFTKN 963 (986)
T ss_dssp CHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC------SSEEEEECSCHHHHTT
T ss_pred CchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh------CCEEEEEECCHHHHHH
Confidence 110 11123579999999999999999999999999999999999999998888754 4699999999999965
Q ss_pred -cCeEEEEeCCEEEEEcC
Q 017091 338 -VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 338 -~d~v~~l~~G~i~~~g~ 354 (377)
||+|++|++|+++..|+
T Consensus 964 l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 964 LTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp TCCEEECCBTTBCCC---
T ss_pred hCCEEEEEECCEEEEeCC
Confidence 99999999999987764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-40 Score=346.11 Aligned_cols=210 Identities=23% Similarity=0.345 Sum_probs=138.0
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHH---------------------HHHhhCCCCC-------CCeEEECCEeC
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFV---------------------NLLLRLYEPS-------DGQIYIDGFPL 198 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl---------------------~~l~gl~~p~-------~G~I~i~g~~i 198 (377)
.++|+||||+|++||++||+||||||||||+ +++.|+.+|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3699999999999999999999999999998 9999999998 45566666554
Q ss_pred CCCCHHHHhcceEEEccCCcC--------------------ccccHHHHHhcCCCCCCC--HHHHHHH-HH-HcCHHHHH
Q 017091 199 TDLDIRWLREKIGFVGQEPQL--------------------LQMDIKSNIMYGCPKDVK--NEDIEWA-AK-QAYVHEFI 254 (377)
Q Consensus 199 ~~~~~~~~r~~i~~v~Q~~~l--------------------~~~tv~eni~~~~~~~~~--~~~~~~~-~~-~~~l~~~~ 254 (377)
.. ..++.+++++|.+.+ ..+|++||+.+....... ..+.... .+ .....+.+
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFL 186 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHH
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHH
Confidence 32 123456666665432 246899999774211100 0010000 00 00011234
Q ss_pred HhCCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 017091 255 LSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR 331 (377)
Q Consensus 255 ~~~~~~~~-~~~~~~~LSgGq~QRv~iAral~~~p~--illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~ 331 (377)
+.+..+.. ......+|||||||||+|||||+.+|+ +|||||||++||+.+...+.+.|+++++ .|.|||+||||
T Consensus 187 ~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~---~g~tvi~vtHd 263 (670)
T 3ux8_A 187 QNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD---LGNTLIVVEHD 263 (670)
T ss_dssp HHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH---TTCEEEEECCC
T ss_pred HHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH---cCCEEEEEeCC
Confidence 44433221 122236799999999999999999998 9999999999999999999999999964 48899999999
Q ss_pred chhHHhcCeEEEE------eCCEEEEEcChHHHhhcCH
Q 017091 332 LSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGR 363 (377)
Q Consensus 332 l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~~ 363 (377)
++.+..||+|++| ++|++++.|+++++.+...
T Consensus 264 ~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 264 EDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp HHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred HHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 9988789999999 8999999999999987654
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-41 Score=342.37 Aligned_cols=197 Identities=24% Similarity=0.273 Sum_probs=150.6
Q ss_pred EEE-EEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeE---------EECCEeCCCC
Q 017091 132 VQF-VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI---------YIDGFPLTDL 201 (377)
Q Consensus 132 i~~-~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I---------~i~g~~i~~~ 201 (377)
.++ +||+|+|++. ..+|+|+| +|++||+++|+||||||||||+|+|+|+++|++|++ .++|.++...
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 455 5999999753 24899999 999999999999999999999999999999999995 3556543211
Q ss_pred CHHH--HhcceEEEccCCcCc----cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 017091 202 DIRW--LREKIGFVGQEPQLL----QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 275 (377)
Q Consensus 202 ~~~~--~r~~i~~v~Q~~~l~----~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~ 275 (377)
.... .+..+++++|+..++ ..|+.||+.... ..+++.++++..++.+..++ ...+||||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~----~~~~~~~~l~~lgl~~~~~~---------~~~~LSgGek 164 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD----ETGKLEEVVKALELENVLER---------EIQHLSGGEL 164 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC----SSSCHHHHHHHTTCTTTTTS---------BGGGCCHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh----HHHHHHHHHHHcCCChhhhC---------ChhhCCHHHH
Confidence 0111 124589999976433 248889886421 11223444555444322111 2367999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCC
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 347 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G 347 (377)
|||+|||||+.+|++|||||||++||+.++..+.+.|+++++ .|.|||+||||++.+.. ||+|++|++|
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~---~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE---EGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999999999864 38899999999999876 9999999864
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=332.70 Aligned_cols=196 Identities=27% Similarity=0.370 Sum_probs=161.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.+...|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+| |+| +|.+... +.++
T Consensus 435 ~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 435 DLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred eeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 4778899999974 369999999999999999999999999999999996 554 4544311 1247
Q ss_pred EEEccCC-cCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCH-HHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 211 GFVGQEP-QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYV-HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 211 ~~v~Q~~-~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
+|++|++ .++ ..|+.||+.+.. ... .+++.+.++..++ .+..++.+ .+||||||||++|||||+.+
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~-~~~-~~~v~~~L~~lgL~~~~~~~~~---------~~LSGGqkQRvaLArAL~~~ 566 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESG-VGT-KEAIKDKLIEFGFTDEMIAMPI---------SALSGGWKMKLALARAVLRN 566 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTC-SSC-HHHHHHHHHHTTCCHHHHHSBG---------GGCCHHHHHHHHHHHHHHTT
T ss_pred EEEcccccccccCCcHHHHHHHhh-cCH-HHHHHHHHHHcCCChhhhcCCc---------ccCCHHHHHHHHHHHHHhcC
Confidence 8999985 444 679999998621 112 5566777777777 44555443 56999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEE-EEcChHHHhh
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELLH 360 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~-~~g~~~~l~~ 360 (377)
|++|||||||++||+.+++.+.+.|++ .|.|+|+||||++.+.. ||+|++|++|+++ ..|+++++..
T Consensus 567 P~lLLLDEPTs~LD~~~~~~l~~~L~~------~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 567 ADILLLDEPTNHLDTVNVAWLVNYLNT------CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHH------SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHh------CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999999999999986 27899999999999976 9999999999997 5899998865
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=333.99 Aligned_cols=205 Identities=30% Similarity=0.408 Sum_probs=147.5
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh----------------------hCCCCCCCeEEECCEeCCCCCHH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL----------------------RLYEPSDGQIYIDGFPLTDLDIR 204 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~----------------------gl~~p~~G~I~i~g~~i~~~~~~ 204 (377)
.++|+||||+|++||++||+||||||||||+++|+ |+.. .+|.|.+++.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~-~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH-LDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG-CSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc-cCceeEeccccCCCCCCc
Confidence 35899999999999999999999999999998754 3333 346888888877543210
Q ss_pred HHh-----------------------------------------cceEEEccCCcC------------------------
Q 017091 205 WLR-----------------------------------------EKIGFVGQEPQL------------------------ 219 (377)
Q Consensus 205 ~~r-----------------------------------------~~i~~v~Q~~~l------------------------ 219 (377)
... ...|+++|+..+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 000 012333332211
Q ss_pred ---------ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccc-ccCCCCCChHHHHHHHHHHHHcCCC-
Q 017091 220 ---------LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET-LVDDDLLSGGQKQRIAIARAILRDP- 288 (377)
Q Consensus 220 ---------~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~LSgGq~QRv~iAral~~~p- 288 (377)
+..|++||+.+... . . ..... .+.+..+..+... .....+|||||||||+|||||+.+|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~--~-~-~~~~~------~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFAS--I-P-KIKRK------LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTT--C-H-HHHHH------HHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHH--h-h-hHHHH------HHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 13688888877522 1 1 11111 1233333332211 1223689999999999999999887
Q ss_pred --CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE------eCCEEEEEcChHHHhh
Q 017091 289 --AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLH 360 (377)
Q Consensus 289 --~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~ 360 (377)
++|||||||+|||+.+...+++.|+++++ .|.|||+||||++.+..||||++| ++|+|++.|+++++.+
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~---~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVD---NGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence 59999999999999999999999999964 389999999999988779999999 8999999999999986
Q ss_pred cCHHH
Q 017091 361 KGRLY 365 (377)
Q Consensus 361 ~~~~~ 365 (377)
....|
T Consensus 641 ~~~~~ 645 (670)
T 3ux8_A 641 VKESH 645 (670)
T ss_dssp CTTCH
T ss_pred CCccH
Confidence 54433
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-38 Score=324.78 Aligned_cols=197 Identities=22% Similarity=0.297 Sum_probs=145.0
Q ss_pred EEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEE-----------ECCEeCCCCCHH
Q 017091 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-----------IDGFPLTDLDIR 204 (377)
Q Consensus 136 ~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~-----------i~g~~i~~~~~~ 204 (377)
|++++|+.. ...|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. +.|.++..+...
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 467888753 24778777 6999999999999999999999999999999999982 333322111111
Q ss_pred HHhcce--EEEccCCcCc-------cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 017091 205 WLREKI--GFVGQEPQLL-------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 275 (377)
Q Consensus 205 ~~r~~i--~~v~Q~~~l~-------~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~ 275 (377)
.+...+ .+.+|....+ ..++.+++... .....+.+.++++..++....++.+ .+||||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~--~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGe~ 227 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR--MEKSPEDVKRYIKILQLENVLKRDI---------EKLSGGEL 227 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH--CCSCHHHHHHHHHHHTCTGGGGSCT---------TTCCHHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh--hhhHHHHHHHHHHHcCCcchhCCCh---------HHCCHHHH
Confidence 122223 2334432211 12566665542 1223455566666666544444333 67999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEE
Q 017091 276 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i 349 (377)
|||+|||||+.+|++||||||||+||+.+...+.+.|+++++ .|+|||+||||++.+.. ||+|++|++|..
T Consensus 228 Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~---~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA---PTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT---TTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999999999999999999999999999999999999864 48899999999999976 999999987654
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-38 Score=319.72 Aligned_cols=192 Identities=20% Similarity=0.285 Sum_probs=142.4
Q ss_pred EEEEEcCCCCCCCceeeeeEE-EeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeE-----------EECCEeCCCCCH
Q 017091 136 NISFHYPSRPTVPILNHVCLT-IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-----------YIDGFPLTDLDI 203 (377)
Q Consensus 136 ~v~~~y~~~~~~~vL~~isl~-i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I-----------~i~g~~i~~~~~ 203 (377)
+++.+|+.+ .++-..|. +++||++||+||||||||||+|+|+|+++|++|+| .++|.++..+..
T Consensus 4 ~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 467789753 34555554 45899999999999999999999999999999998 577766532211
Q ss_pred HHHhc--c----eEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 204 RWLRE--K----IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 204 ~~~r~--~----i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..... . +.+++|.+.++.+++.+++..... .+...++++..++....++. ..+||||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~----~~~~~~~l~~l~l~~~~~~~---------~~~LSgGe~Qr 146 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE----RGKKDEVKELLNMTNLWNKD---------ANILSGGGLQR 146 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCC----SSCHHHHHHHTTCGGGTTSB---------GGGCCHHHHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcchh----HHHHHHHHHHcCCchhhcCC---------hhhCCHHHHHH
Confidence 11111 2 333444444556788887753211 12234455555543322221 25799999999
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCE
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 348 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~ 348 (377)
|+|||||+.+|++||||||||+||+.++..+.+.|++++ .|+|||+||||++.+.. ||+|++|++|.
T Consensus 147 v~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~----~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 147 LLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL----KNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC----TTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh----CCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999999999999999999999999999999999999984 37899999999999876 99999998754
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=323.25 Aligned_cols=238 Identities=14% Similarity=0.160 Sum_probs=188.8
Q ss_pred HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEc
Q 017091 62 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHY 141 (377)
Q Consensus 62 v~~g~lt~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y 141 (377)
...+..+-+.+.+|+.+..+ ..|+..++..+..++.+..+..|+.++++.+++.... . ..++...+.|+++||+|+|
T Consensus 35 ~a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~-~-~~~~~~~~~i~~~~vs~~y 111 (305)
T 2v9p_A 35 YALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATG-E-GSWKSILTFFNYQNIELIT 111 (305)
T ss_dssp HHHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCS-S-CCTHHHHHHHHHTTCCHHH
T ss_pred HHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-C-CcccccCCeEEEEEEEEEc
Confidence 34455667788888877666 4789999999999999999999999999875432111 1 1111122358999999999
Q ss_pred CCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc
Q 017091 142 PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 221 (377)
Q Consensus 142 ~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 221 (377)
+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.+|.
T Consensus 112 ~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~ 166 (305)
T 2v9p_A 112 F----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWL 166 (305)
T ss_dssp H----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGG
T ss_pred C----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccc
Confidence 6 26999999999999999999999999999999999999 8988 467899999999
Q ss_pred ccHHH-HHhcCCCCCCCHHHHHHHHHHcCHHHHHHh-CCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCC
Q 017091 222 MDIKS-NIMYGCPKDVKNEDIEWAAKQAYVHEFILS-LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 299 (377)
Q Consensus 222 ~tv~e-ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~ 299 (377)
.|+++ ||.++. +.++ .++++++. +|.+++ +..|||||||| |||++++|+||| ||+
T Consensus 167 ~ti~~~ni~~~~--~~~~----------~~~~~i~~~L~~gld----g~~LSgGqkQR---ARAll~~p~iLl----Ts~ 223 (305)
T 2v9p_A 167 ASLADTRAALVD--DATH----------ACWRYFDTYLRNALD----GYPVSIDRKHK---AAVQIKAPPLLV----TSN 223 (305)
T ss_dssp GGGTTCSCEEEE--EECH----------HHHHHHHHTTTGGGG----TCCEECCCSSC---CCCEECCCCEEE----EES
T ss_pred ccHHHHhhccCc--cccH----------HHHHHHHHHhHccCC----ccCcCHHHHHH---HHHHhCCCCEEE----ECC
Confidence 99997 998852 2222 23455666 676666 56899999999 999999999999 999
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHHHHH
Q 017091 300 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 371 (377)
Q Consensus 300 LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 371 (377)
||+.++..+.. +||+++.+..||+| +|++|++++.|+++++ ++.|++++..
T Consensus 224 LD~~~~~~i~~-----------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~~ 274 (305)
T 2v9p_A 224 IDVQAEDRYLY-----------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWGR 274 (305)
T ss_dssp SCSTTCGGGGG-----------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTTT
T ss_pred CCHHHHHHHHH-----------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHHH
Confidence 99998866631 29999988889999 9999999999999999 5678777654
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=316.19 Aligned_cols=209 Identities=30% Similarity=0.440 Sum_probs=150.2
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHH---------HHHhhCCCCC------CC------eEEECCEeCCCCC---H
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFV---------NLLLRLYEPS------DG------QIYIDGFPLTDLD---I 203 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl---------~~l~gl~~p~------~G------~I~i~g~~i~~~~---~ 203 (377)
..|+||||+|++|++++|+||||||||||+ +++.+...+. +| .+.++..++.... +
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 4444443333 33 2445554443211 0
Q ss_pred H-------HH-------------------------------hcceEEEccCCcCc-------------------------
Q 017091 204 R-------WL-------------------------------REKIGFVGQEPQLL------------------------- 220 (377)
Q Consensus 204 ~-------~~-------------------------------r~~i~~v~Q~~~l~------------------------- 220 (377)
. .. .+..|+++++..++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0 00 12357777766543
Q ss_pred --------cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccc-cCCCCCChHHHHHHHHHHHHcCCC---
Q 017091 221 --------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL-VDDDLLSGGQKQRIAIARAILRDP--- 288 (377)
Q Consensus 221 --------~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~LSgGq~QRv~iAral~~~p--- 288 (377)
.+|+.|++.+... . . ... ...+.++.+..++... ....+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~--~-~-~~~------~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p 827 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN--I-P-SIK------RTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGR 827 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT--C-H-HHH------HHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred cCCHHHHhhCCHHHHHHHHhc--c-h-hHH------HHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 2355555554311 0 0 011 1223444444443221 224689999999999999999875
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE------eCCEEEEEcChHHHhhcC
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~ 362 (377)
++|||||||+|||+.+++.+++.|+++.+ .|.|||+||||++.++.||+|++| ++|+|++.|+|+++++..
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~---~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~ 904 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVD---RGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNP 904 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCC
Confidence 79999999999999999999999999864 488999999999999889999999 899999999999999887
Q ss_pred HHHHHHH
Q 017091 363 RLYAKLV 369 (377)
Q Consensus 363 ~~~~~~~ 369 (377)
+.|...+
T Consensus 905 ~syt~~~ 911 (916)
T 3pih_A 905 HSYTGRF 911 (916)
T ss_dssp TCHHHHH
T ss_pred chHHHHH
Confidence 7676544
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=311.96 Aligned_cols=215 Identities=28% Similarity=0.402 Sum_probs=156.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh-hCC-------CCCCC-------------
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLY-------EPSDG------------- 189 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~-gl~-------~p~~G------------- 189 (377)
.|+++|++. .+|+||||+|++||+++|+|+||||||||+++|+ |.+ .+..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 488888851 3799999999999999999999999999999864 221 12333
Q ss_pred eEEECCEeCCCCC---HH-------HH---------hcceEEEccCCcC---------------------c---------
Q 017091 190 QIYIDGFPLTDLD---IR-------WL---------REKIGFVGQEPQL---------------------L--------- 220 (377)
Q Consensus 190 ~I~i~g~~i~~~~---~~-------~~---------r~~i~~v~Q~~~l---------------------~--------- 220 (377)
.|.+++.++...+ +. .. .+.+||++|.+.+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 3788888774321 11 11 1336888875321 0
Q ss_pred -------------------------cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCc-ccccCCCCCChHH
Q 017091 221 -------------------------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQ 274 (377)
Q Consensus 221 -------------------------~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~LSgGq 274 (377)
.+|+.||+.+... . . .... ..+.++.+..++ .......+|||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~--~-~-~~~~------~~~~L~~~gL~~~~l~~~~~~LSGGe 850 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS--I-P-KIKR------KLETLYDVGLGYMKLGQPATTLSGGE 850 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS--C-H-HHHH------HHHHHHHTTCSSSBTTCCGGGCCHHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc--c-h-hHHH------HHHHHHHcCCCcccccCchhhCCHHH
Confidence 1355555554311 1 1 1111 134455554433 1122246899999
Q ss_pred HHHHHHHHHHcCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE------e
Q 017091 275 KQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------D 345 (377)
Q Consensus 275 ~QRv~iAral~~~p---~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l------~ 345 (377)
||||+|||+|+.+| ++|||||||+|||+.+...+++.|+++.+ .|.|||+||||++.+..||+|++| +
T Consensus 851 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~---~G~TVIvisHdl~~i~~aDrIivL~p~gG~~ 927 (972)
T 2r6f_A 851 AQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD---NGDTVLVIEHNLDVIKTADYIIDLGPEGGDR 927 (972)
T ss_dssp HHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEECSSSTTS
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHhCCEEEEEcCCCCCC
Confidence 99999999999875 99999999999999999999999999864 488999999999998779999999 7
Q ss_pred CCEEEEEcChHHHhhcCHHHH
Q 017091 346 DGRIIEVGNHAELLHKGRLYA 366 (377)
Q Consensus 346 ~G~i~~~g~~~~l~~~~~~~~ 366 (377)
+|+|+..|+++++......|.
T Consensus 928 ~G~Iv~~g~~~el~~~~~~~t 948 (972)
T 2r6f_A 928 GGQIVAVGTPEEVAEVKESHT 948 (972)
T ss_dssp CCSEEEEESHHHHHTCTTCHH
T ss_pred CCEEEEecCHHHHHhCchhHH
Confidence 899999999999987654443
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-35 Score=309.34 Aligned_cols=217 Identities=24% Similarity=0.335 Sum_probs=155.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHH-HhhCC-------CC----------------
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL-LLRLY-------EP---------------- 186 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~-l~gl~-------~p---------------- 186 (377)
.|+++|+++ .+|+||||+|++||++||+|+||||||||+++ |+|++ +|
T Consensus 502 ~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 502 WLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp EEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred eEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 499999975 16999999999999999999999999999996 76554 23
Q ss_pred --CCC-------eEEECCEeCCCCCH----------HHHhc---------ceEEEccCC---------------------
Q 017091 187 --SDG-------QIYIDGFPLTDLDI----------RWLRE---------KIGFVGQEP--------------------- 217 (377)
Q Consensus 187 --~~G-------~I~i~g~~i~~~~~----------~~~r~---------~i~~v~Q~~--------------------- 217 (377)
.+| .|.+++.++...+. ..+|+ ..||.++..
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 466 68899888753321 12222 123322211
Q ss_pred -cCc-------------------------cccHHHHHhcCCC-----CCCCHHHHHHHHHHcCHHHHHHhCCCCccc-cc
Q 017091 218 -QLL-------------------------QMDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYET-LV 265 (377)
Q Consensus 218 -~l~-------------------------~~tv~eni~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~ 265 (377)
.++ ..++.||+.+... ..... .. ....+.++.+..++.. ..
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~-~~------~~~~~~L~~~gL~~~~l~~ 726 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADES-AI------FRALDTLREVGLGYLRLGQ 726 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSH-HH------HHHHHHHHHTTCTTSBTTC
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcch-HH------HHHHHHHHHcCCCcccccC
Confidence 111 1345555432100 00001 11 1234456665544422 22
Q ss_pred CCCCCChHHHHHHHHHHHHcCC---CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEE
Q 017091 266 DDDLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 342 (377)
Q Consensus 266 ~~~~LSgGq~QRv~iAral~~~---p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~ 342 (377)
...+|||||||||+|||+|+++ |++|||||||+|||+.+.+.+.+.|+++.+ .|.|||+||||++++..||||+
T Consensus 727 ~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~---~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 727 PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD---AGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEE
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHhCCEEE
Confidence 2468999999999999999996 799999999999999999999999999864 4889999999999996699999
Q ss_pred EE------eCCEEEEEcChHHHhhcCHHH
Q 017091 343 VI------DDGRIIEVGNHAELLHKGRLY 365 (377)
Q Consensus 343 ~l------~~G~i~~~g~~~~l~~~~~~~ 365 (377)
+| ++|+|++.|+++++++....|
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~~~~ 832 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAAGSV 832 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCTTCS
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCchhH
Confidence 99 799999999999998765433
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=319.60 Aligned_cols=192 Identities=16% Similarity=0.135 Sum_probs=149.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC-e-EEECCEeCCCCCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-Q-IYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~-I~i~g~~i~~~~~~~~r~ 208 (377)
+++++||+|+|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |.+||. .++
T Consensus 118 mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~ 179 (460)
T 2npi_A 118 MKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQ 179 (460)
T ss_dssp HHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTS
T ss_pred hhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccC
Confidence 467777777763 69999999999999999999999999999999999999 9 999981 257
Q ss_pred ceEEEccCCcCc----cccHHHHHhcCCCC--CC-CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL----QMDIKSNIMYGCPK--DV-KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 281 (377)
Q Consensus 209 ~i~~v~Q~~~l~----~~tv~eni~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iA 281 (377)
.++|+||++.+| ..|++||+ ++... .. ..+.+..+++.+ |+.......+|||||||||+||
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~~~~LSgGq~qrlalA 247 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINENKDLYLECISQLGQV 247 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGGCHHHHHHHHHHHHHH
T ss_pred Ceeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccchhhhhHHHHHHHHHH
Confidence 799999998654 35899998 65321 00 011111112222 2222222457999999999999
Q ss_pred HH--HcCCCCE----EEEeC-cCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch------hHHh-cCe-----EE
Q 017091 282 RA--ILRDPAI----LLLDE-ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS------TIKA-VDR-----IV 342 (377)
Q Consensus 282 ra--l~~~p~i----lllDE-Pts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~------~~~~-~d~-----v~ 342 (377)
|| |+.+|++ ||||| ||++||+. .+.+.++++++ +.|+|+|||+.+ .+.. ||+ |+
T Consensus 248 ra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~------~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi 320 (460)
T 2npi_A 248 VGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL------NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIF 320 (460)
T ss_dssp HHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT------TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEE
T ss_pred HHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh------CCCEEEEEccCchhhhHHHHHHhcccccCCEEE
Confidence 99 9999999 99999 99999999 66666666554 679999999988 5554 999 99
Q ss_pred EEe-CCEEEEEcChHHHhh
Q 017091 343 VID-DGRIIEVGNHAELLH 360 (377)
Q Consensus 343 ~l~-~G~i~~~g~~~~l~~ 360 (377)
+|+ +|+++ .|+++++.+
T Consensus 321 ~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 321 FIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp EECCCTTCC-CCCHHHHHH
T ss_pred EEeCCCcEE-ECCHHHHhh
Confidence 999 99999 999988753
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=277.21 Aligned_cols=199 Identities=17% Similarity=0.202 Sum_probs=143.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC--------------------------------------CCCCe
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--------------------------------------PSDGQ 190 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--------------------------------------p~~G~ 190 (377)
+++++||++.+| +++|+||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 799999999999 999999999999999999977764 45788
Q ss_pred EEECCEeCCCCCHHHHhcc-eEEEccCCcCccccHHHHHhcCCCCCCCH-------------------------------
Q 017091 191 IYIDGFPLTDLDIRWLREK-IGFVGQEPQLLQMDIKSNIMYGCPKDVKN------------------------------- 238 (377)
Q Consensus 191 I~i~g~~i~~~~~~~~r~~-i~~v~Q~~~l~~~tv~eni~~~~~~~~~~------------------------------- 238 (377)
+++||++++..+..++... +++++|++.++..+..++..+-.. ....
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~-~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDR-RVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHH-HhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 9999999875445555555 899999987764443333222100 0000
Q ss_pred -------------HHHHHH-----------HH--HcCHHHHHHhCCCC------------------ccc---cc--CCCC
Q 017091 239 -------------EDIEWA-----------AK--QAYVHEFILSLPCG------------------YET---LV--DDDL 269 (377)
Q Consensus 239 -------------~~~~~~-----------~~--~~~l~~~~~~~~~~------------------~~~---~~--~~~~ 269 (377)
+++... .+ ...+.+.+..+... .+. .. ++.+
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 000000 00 00112223332211 000 00 1111
Q ss_pred --------CChHHHHHHHHHHHHcCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcC
Q 017091 270 --------LSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD 339 (377)
Q Consensus 270 --------LSgGq~QRv~iAral~~~p--~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d 339 (377)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|+++. +|.|||+|||+++.+..||
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~----~~~~vi~itH~~~~~~~~d 363 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA----DTRQVLVVTHLAQIAARAH 363 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSCHHHHTTCS
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh----CCCEEEEEeCcHHHHhhcC
Confidence 7999999999999999999 9999999999999999999999999984 3789999999998887799
Q ss_pred eEEEE----eCCEEEEEc
Q 017091 340 RIVVI----DDGRIIEVG 353 (377)
Q Consensus 340 ~v~~l----~~G~i~~~g 353 (377)
++++| ++|+++...
T Consensus 364 ~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 364 HHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEeccCCceEEEE
Confidence 99999 999997654
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-30 Score=245.50 Aligned_cols=202 Identities=23% Similarity=0.278 Sum_probs=136.9
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC----------------------------------------------
Q 017091 151 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY---------------------------------------------- 184 (377)
Q Consensus 151 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~---------------------------------------------- 184 (377)
++++|++.+| +++|+||||||||||+++|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578899999 99999999999999999999553
Q ss_pred ----CCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCC--C------------CHHHHHHHH
Q 017091 185 ----EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKD--V------------KNEDIEWAA 245 (377)
Q Consensus 185 ----~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~--~------------~~~~~~~~~ 245 (377)
.+.+|.+.+||.++...........+++.||+..++ .+++.+|+....... . ..+++.+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 334578899998874333445556789889888766 788988886531100 0 001111111
Q ss_pred HHc------------CHH-HHHHhCCCCccccc--------CCCCCChHHHHHHHHHHHHc----CCCCEEEEeCcCCCC
Q 017091 246 KQA------------YVH-EFILSLPCGYETLV--------DDDLLSGGQKQRIAIARAIL----RDPAILLLDEATSAL 300 (377)
Q Consensus 246 ~~~------------~l~-~~~~~~~~~~~~~~--------~~~~LSgGq~QRv~iAral~----~~p~illlDEPts~L 300 (377)
... .+. ...+.++.+++..+ ....||||||||++|||||+ .+|++|||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 100 000 00111222333221 12479999999999999997 689999999999999
Q ss_pred CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeE--EEEeCCEEE-EEcChHH
Q 017091 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI--VVIDDGRII-EVGNHAE 357 (377)
Q Consensus 301 D~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v--~~l~~G~i~-~~g~~~~ 357 (377)
|+...+.+.+.++++. .+.|+|+|||+++....||++ ++|.+|... ...+.++
T Consensus 255 D~~~~~~l~~~l~~~~----~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 255 DDYNAERFKRLLKENS----KHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp CHHHHHHHHHHHHHHT----TTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred CHHHHHHHHHHHHHhc----CCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 9999999999999873 378999999998777779986 888887543 3344443
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-33 Score=250.43 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=100.8
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 227 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 227 (377)
.+|+|+ ++||+++|+||||||||||+|+|+|+ +|++|+|.. .++.. +....++.+||+||++ +||
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC-CchhhhcceEEecCCH-------HHH
Confidence 589986 89999999999999999999999999 999999943 33321 1123467899999987 445
Q ss_pred H-hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHH
Q 017091 228 I-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306 (377)
Q Consensus 228 i-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~ 306 (377)
+ .+..+ ....+........+.++++. + | |||||++|||||+.+|++|||||||++ ++.
T Consensus 79 l~~~~~~---~~~~~~~~~~~~~~~~~l~~---g---------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~ 137 (208)
T 3b85_A 79 IDPYLRP---LHDALRDMVEPEVIPKLMEA---G---------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPA 137 (208)
T ss_dssp -CTTTHH---HHHHHTTTSCTTHHHHHHHT---T---------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHH
T ss_pred HHHHHHH---HHHHHHHhccHHHHHHHHHh---C---------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHH
Confidence 4 22100 00000000000112333332 1 2 999999999999999999999999999 788
Q ss_pred HHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCE
Q 017091 307 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 348 (377)
Q Consensus 307 ~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~ 348 (377)
.+.+.|+++ + .|+||| +|||++.+.. ....++|.
T Consensus 138 ~l~~~l~~l-~---~g~tii-vtHd~~~~~~---~~~~~~G~ 171 (208)
T 3b85_A 138 QMKMFLTRL-G---FGSKMV-VTGDITQVDL---PGGQKSGL 171 (208)
T ss_dssp HHHHHHTTB-C---TTCEEE-EEEC---------------CC
T ss_pred HHHHHHHHh-c---CCCEEE-EECCHHHHhC---cCCCCCcH
Confidence 888888877 3 478999 9999987643 33345553
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=239.78 Aligned_cols=81 Identities=28% Similarity=0.449 Sum_probs=75.0
Q ss_pred CCCChHHHHHHHHHHHHc------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeE
Q 017091 268 DLLSGGQKQRIAIARAIL------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~------~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
.+|||||||||+|||||+ .+|++|||||||++||+.+...+.+.|+++.+ .|+|||+||||++.+..||++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~---~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER---LNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG---SSSEEEEEESCHHHHTTCSCE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEecchHHHHhCCEE
Confidence 479999999999999999 79999999999999999999999999999864 489999999999987779999
Q ss_pred EEEeCCEEEE
Q 017091 342 VVIDDGRIIE 351 (377)
Q Consensus 342 ~~l~~G~i~~ 351 (377)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999975
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-30 Score=224.33 Aligned_cols=149 Identities=19% Similarity=0.252 Sum_probs=106.2
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcC--ccccHHHHHh
Q 017091 152 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL--LQMDIKSNIM 229 (377)
Q Consensus 152 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l--~~~tv~eni~ 229 (377)
||||++++||+++|+||||||||||+|++.+ |...+ +...++ |+++|++.- +..++++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999652 22222 122222 777887632 2333333321
Q ss_pred cCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC-CCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHH-----
Q 017091 230 YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD-DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE----- 303 (377)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~----- 303 (377)
. .. .... ..++..... ....|||||||++||||++.+|++|+|||||++||+.
T Consensus 64 ~-------------~~-----~~~~---~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 Y-------------IV-----SKRL---QLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp H-------------HH-----HHHH---HTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred H-------------HH-----HHHH---hCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 00 0001 123333222 2457999999999999999999999999999999999
Q ss_pred -----------HHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeE
Q 017091 304 -----------SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 304 -----------~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
....+.+.++++++ .|.|+|+||||++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~---~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQR---EGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHH---HTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHh---cCCcEEEEeCCHHHhhhhhhc
Confidence 55888888887764 389999999999999877664
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-31 Score=259.07 Aligned_cols=206 Identities=13% Similarity=0.172 Sum_probs=140.5
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCcccccccccc-cccccEE---------E
Q 017091 66 QVSPEQLTKYVLYCEWLIYATWRMVD-NLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ-RLMGHVQ---------F 134 (377)
Q Consensus 66 ~lt~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-~~~~~i~---------~ 134 (377)
.+|.+.+.+++.+...+..+ .+.. ....+..+..+..|+..+++.|..... ....... .....++ +
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~~~-~~~~~ir~~~~~~i~l~~l~~~g~~ 151 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVNDE-TISISIRIPSKTTYPHSFFEEQGFY 151 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSSTT-CCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccCCC-CceEEEeCCCCCCCCHHHHHhCCCc
Confidence 68999998888776655443 1221 111222233344566666543322110 0000000 0011233 4
Q ss_pred EEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEc
Q 017091 135 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 214 (377)
Q Consensus 135 ~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 214 (377)
++++| | . ++++++||++++|++++|+||||||||||+++|+|+++|++|.|.++|.+. +.....++.+++++
T Consensus 152 ~~v~f-y--~---~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~~ 223 (330)
T 2pt7_A 152 NLLDN-K--E---QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLFF 223 (330)
T ss_dssp TTSTT-H--H---HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEEC
T ss_pred Cchhh-H--H---HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEEe
Confidence 45555 4 1 389999999999999999999999999999999999999999999998652 21111234455443
Q ss_pred cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEe
Q 017091 215 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 294 (377)
Q Consensus 215 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlD 294 (377)
+ |||+||++|||||..+|++||+|
T Consensus 224 g--------------------------------------------------------gg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 224 G--------------------------------------------------------GNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp B--------------------------------------------------------TTBCHHHHHHHHTTSCCSEEEEC
T ss_pred C--------------------------------------------------------CChhHHHHHHHHhhhCCCEEEEc
Confidence 0 89999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCE
Q 017091 295 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 348 (377)
Q Consensus 295 EPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~ 348 (377)
|||+. ++.+.|+.+.. .+.|+|+++|+++....|||+++|.+|.
T Consensus 248 E~~~~-------e~~~~l~~~~~---g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 248 ELRSS-------EAYDFYNVLCS---GHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp CCCST-------HHHHHHHHHHT---TCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred CCChH-------HHHHHHHHHhc---CCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 99982 35566776642 2358999999999667799999998875
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-30 Score=256.07 Aligned_cols=176 Identities=19% Similarity=0.186 Sum_probs=135.3
Q ss_pred CceeeeeEEEeCCc--------------------EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHh
Q 017091 148 PILNHVCLTIEANE--------------------VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 207 (377)
Q Consensus 148 ~vL~~isl~i~~Ge--------------------~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r 207 (377)
.+|++|||++++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.+++ +
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999997653 1
Q ss_pred cceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChH--HHHHHHHHHHHc
Q 017091 208 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG--QKQRIAIARAIL 285 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgG--q~QRv~iAral~ 285 (377)
.++++|++.....|+.||+.++.. ...+.+.++..++.+. +... . |||| |+||++|||||+
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~----~~~~~~~L~~~~L~~~--------~~~~--~-lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST----NFPPDTYLEKMKFYEY--------DFFI--I-ISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS----SCCHHHHHHHTTGGGC--------SEEE--E-EESSCCCHHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccch----HHHHHHHHHHcCCCcc--------CCeE--E-eCCCCccHHHHHHHHHHH
Confidence 288999875447899998876532 1223344444443211 1111 2 8999 999999999999
Q ss_pred C----------CCCEEEEeCcCCCCCHHHHHHHHHHHHHhh-----cc-CCCCeEEEEEecCchh--HHh-cCeEE-EEe
Q 017091 286 R----------DPAILLLDEATSALDSESEHYVKGVLHALR-----ND-CKTKRTVIVIAHRLST--IKA-VDRIV-VID 345 (377)
Q Consensus 286 ~----------~p~illlDEPts~LD~~~~~~i~~~l~~l~-----~~-~~~g~tvi~itH~l~~--~~~-~d~v~-~l~ 345 (377)
. +|++++|||||++||+.++.++.+.++++. +. .....+++++||+++. ++. ||++. .|.
T Consensus 173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 9 999999999999999999999999998874 21 1123678899999886 765 88874 444
Q ss_pred CC
Q 017091 346 DG 347 (377)
Q Consensus 346 ~G 347 (377)
.|
T Consensus 253 eg 254 (413)
T 1tq4_A 253 IY 254 (413)
T ss_dssp GG
T ss_pred cc
Confidence 44
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-28 Score=218.03 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=102.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
+++|+||||||||||+|+|+|++. |.++|.+.........++++||++|++ ++.+|+. +.. ....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~-~~~~--- 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSK-FFTS--- 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EET-TCCC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhh-cCCc---
Confidence 689999999999999999999985 567776543222113467899999986 2222321 100 0000
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHH-----HcCCCCEEEEeC--cCCCCCHHHHHHHHHHH
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARA-----ILRDPAILLLDE--ATSALDSESEHYVKGVL 312 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAra-----l~~~p~illlDE--Pts~LD~~~~~~i~~~l 312 (377)
+...+ ..+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.+
T Consensus 67 --------------------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l 126 (178)
T 1ye8_A 67 --------------------KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIM 126 (178)
T ss_dssp --------------------SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHH
T ss_pred --------------------cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHH
Confidence 00111 24699999999999996 999999999999 99999999998888877
Q ss_pred HHhhccCCCCeEEEEEec---CchhHHh-cCeEEEEeCCEEEE
Q 017091 313 HALRNDCKTKRTVIVIAH---RLSTIKA-VDRIVVIDDGRIIE 351 (377)
Q Consensus 313 ~~l~~~~~~g~tvi~itH---~l~~~~~-~d~v~~l~~G~i~~ 351 (377)
.+ .+.|+|++|| +.+.+.. ||+ .+|++++
T Consensus 127 ~~------~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 127 HD------PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp TC------TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred hc------CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 54 2567888885 8888875 887 4566655
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-29 Score=227.68 Aligned_cols=171 Identities=15% Similarity=0.113 Sum_probs=113.2
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK 225 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~ 225 (377)
.++++| .+|++||+++|+||||||||||+|+|+|+++ .|.+++...........++.++|+||++.+| ..|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468888 7999999999999999999999999999996 3555442211111112356799999999877 56777
Q ss_pred HHHhcCC-------CCCCCHHHHHHH----------HHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC
Q 017091 226 SNIMYGC-------PKDVKNEDIEWA----------AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 226 eni~~~~-------~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p 288 (377)
+|+.... .......++.+. ++..++.++.+..| ..|| ||+.+|
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~lS-----------~l~~~p 142 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP---------EAVT-----------VFLAPP 142 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT---------TSEE-----------EEEECS
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC---------CcEE-----------EEEECC
Confidence 7763210 001112222222 22334444445544 3456 899999
Q ss_pred CEEEEeCcCCCC----CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEe
Q 017091 289 AILLLDEATSAL----DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 345 (377)
Q Consensus 289 ~illlDEPts~L----D~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~ 345 (377)
++++|||||+++ |+..++++.+.+++++++ .|.|+|+||||++.+.. ||+|++|.
T Consensus 143 ~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~--~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 143 SWQDLQARLIGRGTETADVIQRRLDTARIELAAQ--GDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGG--GGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh--ccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999999999998 788999999999998643 47899999999999875 99999984
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-28 Score=246.17 Aligned_cols=199 Identities=18% Similarity=0.112 Sum_probs=153.2
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCE---eCCCCC----
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLD---- 202 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~---~i~~~~---- 202 (377)
..++++|+++.|+.+ ..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|++|.|.++|+ ++..+.
T Consensus 130 ~~l~~~~v~~~~~tg--~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG--VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCCS--CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCCC--ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 358999999999732 4699999 999999999999999999999999999999999999999998 443321
Q ss_pred -HHHHhcceEEEccC-CcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 203 -IRWLREKIGFVGQE-PQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 203 -~~~~r~~i~~v~Q~-~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
...+++.++|++|+ ..++ ..|+.+|+.+.. + .... ....+..+++ ....||+|| |||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e-~~~~-~~~~v~~~ld----------~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------E-DFRD-RGQHVLLIMD----------SLTRYAMAQ-REIA 267 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------H-HHHT-TTCEEEEEEE----------CHHHHHHHH-HHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH------H-HHHh-CCCCHHHHHH----------hHHHHHHHH-HHHH
Confidence 23467789999995 3334 679999987631 0 0000 0000000000 013589999 9999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC-CCCe-----EEEEEecCchhHHhcCeEEEEeCCEEEEEc
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC-KTKR-----TVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~-~~g~-----tvi~itH~l~~~~~~d~v~~l~~G~i~~~g 353 (377)
|| +.+|++ |+|||+.....+.+++.++.+.. ..|. ||+++|||++ ...||++++|.+|+|+..+
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECH
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeC
Confidence 99 899998 99999999999999998875310 1264 9999999999 5569999999999999999
Q ss_pred ChHHHhh
Q 017091 354 NHAELLH 360 (377)
Q Consensus 354 ~~~~l~~ 360 (377)
+++++..
T Consensus 338 ~~~~~~~ 344 (438)
T 2dpy_A 338 RLAEAGH 344 (438)
T ss_dssp HHHHTTC
T ss_pred CHHHccC
Confidence 8887643
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-28 Score=233.17 Aligned_cols=175 Identities=15% Similarity=0.156 Sum_probs=126.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH----HHH--hcceEEEccCCc-Cc-
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWL--REKIGFVGQEPQ-LL- 220 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~----~~~--r~~i~~v~Q~~~-l~- 220 (377)
.++++||++++|++++|+||||||||||++.|+|+++|++|+|.++|.|+..... ..+ +..|+|++|++. ++
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 3467899999999999999999999999999999999999999999998754321 222 357999999987 66
Q ss_pred cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC--EEEEeCc
Q 017091 221 QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA--ILLLDEA 296 (377)
Q Consensus 221 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~--illlDEP 296 (377)
..|++||+.++..... +. .+++.. |...... ..+|| |||++||||++.+|+ +|+|| |
T Consensus 169 ~~~v~e~l~~~~~~~~-d~------------~lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-p 229 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEGY-DV------------VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-G 229 (302)
T ss_dssp HHHHHHHHHHHHHTTC-SE------------EEECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-G
T ss_pred HHHHHHHHHHHHHcCC-cc------------hHHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-C
Confidence 5799999976421110 00 011111 1111000 13588 999999999999999 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEec---------CchhHHh-cCeEEEEeCCEEE
Q 017091 297 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH---------RLSTIKA-VDRIVVIDDGRII 350 (377)
Q Consensus 297 ts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH---------~l~~~~~-~d~v~~l~~G~i~ 350 (377)
|+|||+.++. +++.+. .|.|+|++|| .++.+.. .+.|.++..|+.+
T Consensus 230 tsglD~~~~~------~~~~~~--~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 230 NTGLNMLPQA------REFNEV--VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGGGHHHH------HHHHHH--TCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCCcCHHHHH------HHHHHh--cCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 9999998652 333321 3789999999 3344444 6899999999753
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.5e-30 Score=232.93 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=101.3
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH-HHHhcceEEEccCCcCcc-cc-H
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKIGFVGQEPQLLQ-MD-I 224 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~i~~v~Q~~~l~~-~t-v 224 (377)
..|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++...++ ...+..++|+||++.+|. .+ .
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 6 99999 877644322 223567999999987763 22 1
Q ss_pred HHHHhc---CCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH-----HHHHcCCCCEEEEeC
Q 017091 225 KSNIMY---GCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI-----ARAILRDPAILLLDE 295 (377)
Q Consensus 225 ~eni~~---~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i-----Aral~~~p~illlDE 295 (377)
.+++.+ ... .......+.++++.. . .... ...|||||+||++| ||+++.+|++++|||
T Consensus 87 ~~~l~~~~~~~~~~g~~~~~i~~~l~~~---------~---~~il-~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde 153 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTLKSEYDKAKEQN---------K---ICLF-EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLS 153 (218)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTT---------C---EEEE-EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHH
T ss_pred cchhhhhhcccccCCCcHHHHHHHHhCC---------C---cEEE-EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHH
Confidence 222221 100 001122233333221 1 1111 14689999999999 899999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhc
Q 017091 296 ATSALDSESEHYVKGVLHALRN 317 (377)
Q Consensus 296 Pts~LD~~~~~~i~~~l~~l~~ 317 (377)
||+++|..++..+.+.+.++.+
T Consensus 154 ~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 154 RLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999988887643
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-27 Score=228.97 Aligned_cols=172 Identities=15% Similarity=0.160 Sum_probs=126.6
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH----HHH--hcceEEEccCCc-Cc-cc
Q 017091 151 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWL--REKIGFVGQEPQ-LL-QM 222 (377)
Q Consensus 151 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~----~~~--r~~i~~v~Q~~~-l~-~~ 222 (377)
.++||++++|++++|+||||||||||++.|+|+++|++|+|.++|.|+..... ..+ +..|+|++|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 46899999999999999999999999999999999999999999998754321 122 457999999987 66 57
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCCC--EEEEeCcCC
Q 017091 223 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPA--ILLLDEATS 298 (377)
Q Consensus 223 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p~--illlDEPts 298 (377)
|++||+.++..... +. .+++.. |...... ..+|| |||++||||++.+|+ +|+|| ||+
T Consensus 228 tv~e~l~~~~~~~~-d~------------~lldt~--Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptt 288 (359)
T 2og2_A 228 VLSKAVKRGKEEGY-DV------------VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 288 (359)
T ss_dssp HHHHHHHHHHHTTC-SE------------EEEECC--CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGG
T ss_pred hHHHHHHHHHhCCC-HH------------HHHHhc--CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCC
Confidence 99999976421110 00 011111 1111000 13588 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCeEEEEEec---------CchhHHh-cCeEEEEeCCEE
Q 017091 299 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAH---------RLSTIKA-VDRIVVIDDGRI 349 (377)
Q Consensus 299 ~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH---------~l~~~~~-~d~v~~l~~G~i 349 (377)
|||+.++. +++.+. .|.|+|++|| .++.+.. .+.|.++..|+.
T Consensus 289 glD~~~~~------~~~~~~--~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 289 GLNMLPQA------REFNEV--VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGHHHH------HHHHHH--TCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCHHHHH------HHHHHh--cCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99998652 233221 3789999999 3344444 689999999975
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-27 Score=221.87 Aligned_cols=147 Identities=19% Similarity=0.205 Sum_probs=95.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCC--CCH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKD--VKN 238 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~--~~~ 238 (377)
.++|+||||||||||+|+|+|+.+|++|+|.++|.++... ..++.++|++|++.++ ..||.||+.++.... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 5899999999999999999999999999999999887432 2356799999999887 679999999875321 112
Q ss_pred HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhcc
Q 017091 239 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 318 (377)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~ 318 (377)
+.+..... .++.+.++ .+||||||||+++|||++. ++++|||+++||+.. .+.++.+++
T Consensus 81 ~~i~~~~~----~~~~~~~~---------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~- 139 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK---------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK- 139 (270)
T ss_dssp HHHHHHHH----HHHHHHHH---------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT-
T ss_pred HHHHHHHH----HHHHhhhH---------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh-
Confidence 22333222 23333333 3599999999999999886 999999999999986 344555542
Q ss_pred CCCCeEEEEEecCchhH
Q 017091 319 CKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 319 ~~~g~tvi~itH~l~~~ 335 (377)
. .++|+|.|..+.+
T Consensus 140 --~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 140 --V-VNIIPVIAKADTM 153 (270)
T ss_dssp --T-SEEEEEETTGGGS
T ss_pred --c-CcEEEEEeccccC
Confidence 2 6889898887654
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-24 Score=208.40 Aligned_cols=81 Identities=19% Similarity=0.304 Sum_probs=74.8
Q ss_pred CCChHHHHHHHHHHHHc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcC
Q 017091 269 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD 339 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~---------~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d 339 (377)
.||||||||++|||+|+ .+|+|||||||||+||+..+..+.+.+.++ +.|+|++||. +. .||
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~------~qt~i~~th~-~~--~~~ 335 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV------PQAIVTGTEL-AP--GAA 335 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS------SEEEEEESSC-CT--TCS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc------CcEEEEEEec-cc--cCC
Confidence 59999999999999999 899999999999999999999999999876 2699999994 44 899
Q ss_pred eEEEEeCCEEEEEcChHHH
Q 017091 340 RIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 340 ~v~~l~~G~i~~~g~~~~l 358 (377)
++++|++|+++..|+++++
T Consensus 336 ~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEEETTEEEECCCTTTS
T ss_pred EEEEEECCEEEecCCHHHH
Confidence 9999999999999999876
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-28 Score=233.12 Aligned_cols=207 Identities=17% Similarity=0.185 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHhcCCCCcccccccccccccccEEEEEEEEEcCCCCCCCceeeeeEE-----------------------
Q 017091 100 IGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLT----------------------- 156 (377)
Q Consensus 100 ~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vL~~isl~----------------------- 156 (377)
..++.++.+.+..+.+.. +....+.....|+++||++.|. ++++++++.
T Consensus 15 r~~~~~l~~~~~~~~~~~---~~~~l~~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (312)
T 3aez_A 15 RRQWRALRMSTPLALTEE---ELVGLRGLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPD 86 (312)
T ss_dssp HHHHHGGGTTCCCCCCHH---HHHTTCCTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSS
T ss_pred HHHHHHHHhcCCCCCCHH---HHHhccCCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccC
Confidence 345566655444433221 1111222334699999999994 477877765
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 236 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 236 (377)
+++|+++||+||||||||||+++|+|+++|+.|. .++++|+|++.+++.|++||+.+......
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~ 149 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGF 149 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTS
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCC
Confidence 8999999999999999999999999999998663 46999999998886699999875321111
Q ss_pred CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh
Q 017091 237 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 316 (377)
Q Consensus 237 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~ 316 (377)
.... +...+.++++.+..+.. ......|||||+||+++|||++.+|+|||+|||++.+|+.. ..+.++
T Consensus 150 ~~~~-----d~~~~~~~L~~l~~~~~-~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~- 217 (312)
T 3aez_A 150 PESY-----NRRALMRFVTSVKSGSD-YACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDL- 217 (312)
T ss_dssp GGGB-----CHHHHHHHHHHHHTTCS-CEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGG-
T ss_pred ChHH-----HHHHHHHHHHHhCCCcc-cCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHh-
Confidence 1100 00112223333322221 11124699999999999999999999999999999998622 112222
Q ss_pred ccCCCCeEEEEEecCchhH-Hh-cCeEEEEeCCE
Q 017091 317 NDCKTKRTVIVIAHRLSTI-KA-VDRIVVIDDGR 348 (377)
Q Consensus 317 ~~~~~g~tvi~itH~l~~~-~~-~d~v~~l~~G~ 348 (377)
.+ .+|+|+|+.+.. .. ++|.+.+.+|.
T Consensus 218 ----~D-~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 218 ----FD-FSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp ----CS-EEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred ----cC-cEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 23 458888888765 33 67776666653
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-26 Score=219.64 Aligned_cols=194 Identities=16% Similarity=0.140 Sum_probs=141.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC-------CCH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-------LDI 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~-------~~~ 203 (377)
.++++++++.|+.+ ..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++... ...
T Consensus 45 ~i~~~~l~~~~~tg--~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFILG--VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECCS--CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCCC--CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 58899999999732 4699999 9999999999999999999999999999999999999998865211 111
Q ss_pred HHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccc---CCCCCChHHHHHHHH
Q 017091 204 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV---DDDLLSGGQKQRIAI 280 (377)
Q Consensus 204 ~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~LSgGq~QRv~i 280 (377)
..+++.+.+++|... +. .+++..+.....+.++.... +.+... ....||+|| ||+++
T Consensus 122 ~~~~~~v~~~~~~~~----~~-------------~~r~~~~~~~~~~ae~~~~~--~~~vl~~ld~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----PA-------------LERMKAAFTATTIAEYFRDQ--GKNVLLMMDSVTRYARAA-RDVGL 181 (347)
T ss_dssp HHHTTEEEEEECTTS----CH-------------HHHHHHHHHHHHHHHHHHTT--TCEEEEEEETHHHHHHHH-HHHHH
T ss_pred hhhhceEEEEECCCC----CH-------------HHHHHHHHHHHHHHHHHHhc--cccHHHHHhhHHHHHHHH-HHHHH
Confidence 123344566665321 11 12222222222333332221 211111 124689999 99999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCe-----EEEEEecCchhHHhcCeEEEEeCCEEEEEcCh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-----TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~-----tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~ 355 (377)
| +.+|++ |+|||+.....+.++++++.+. +.|. ||+++|||++ ...||++++|.+|+|+.++++
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~-~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l 250 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPA-PKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTREL 250 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEEC-SSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCC-CCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCH
Confidence 9 688887 9999999999999999888541 2477 9999999999 445999999999999999988
Q ss_pred HHH
Q 017091 356 AEL 358 (377)
Q Consensus 356 ~~l 358 (377)
+++
T Consensus 251 ~~~ 253 (347)
T 2obl_A 251 AEE 253 (347)
T ss_dssp HTT
T ss_pred HHc
Confidence 765
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-24 Score=230.77 Aligned_cols=171 Identities=16% Similarity=0.173 Sum_probs=123.3
Q ss_pred cEEEEE-----EEEEcCCCCCCCceeeeeEEEeC-------CcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeC
Q 017091 131 HVQFVN-----ISFHYPSRPTVPILNHVCLTIEA-------NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 198 (377)
Q Consensus 131 ~i~~~~-----v~~~y~~~~~~~vL~~isl~i~~-------Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i 198 (377)
.|+++| |++.|++. ..+++|++|++++ |++++|+||||||||||+|++ |++.+
T Consensus 750 ~l~i~~~rHP~l~~~~~~~--~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFFGD--DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CEEEEEECCCC------CC--CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred eEEEEeccccEEEEEecCC--ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 599999 99999432 3699999999987 999999999999999999999 99863
Q ss_pred CCCCHHHHhcceE-EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHH
Q 017091 199 TDLDIRWLREKIG-FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 277 (377)
Q Consensus 199 ~~~~~~~~r~~i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QR 277 (377)
..++| ||||++. ..++.|+|.... ++.+.+.. + ...+|+++++
T Consensus 815 --------~aqiG~~Vpq~~~--~l~v~d~I~~ri----------------g~~d~~~~---~------~stf~~em~~- 858 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC--RLTPIDRVFTRL----------------GASDRIMS---G------ESTFFVELSE- 858 (1022)
T ss_dssp --------HHTTTCCEESSEE--EECCCSBEEEEC----------------C------------------CHHHHHHHH-
T ss_pred --------HhheeEEeccCcC--CCCHHHHHHHHc----------------CCHHHHhh---c------hhhhHHHHHH-
Confidence 23566 9999873 567777764211 11111110 1 1346777665
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHH-HHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEE--EEc
Q 017091 278 IAIARAILRDPAILLLDEATSALDSES-EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII--EVG 353 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~-~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~--~~g 353 (377)
+++|++++.+|+++||||||+|+|+.. ...+++.++.+.+. .|+++|++||+++.+.. +|++.++ +|++. +.|
T Consensus 859 ~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~--~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAET--IKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHT--SCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 999999999999999999999999987 45578888888642 37899999999999876 8998887 58877 445
Q ss_pred Ch
Q 017091 354 NH 355 (377)
Q Consensus 354 ~~ 355 (377)
.+
T Consensus 936 ~~ 937 (1022)
T 2o8b_B 936 EC 937 (1022)
T ss_dssp --
T ss_pred Cc
Confidence 44
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-26 Score=233.20 Aligned_cols=167 Identities=12% Similarity=0.104 Sum_probs=120.9
Q ss_pred CCceeeeeE-EEeCCcEEEEEcCCCCcHHHHHHH--HhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcccc
Q 017091 147 VPILNHVCL-TIEANEVVAIVGLSGSGKSTFVNL--LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD 223 (377)
Q Consensus 147 ~~vL~~isl-~i~~Ge~~~ivG~nGsGKSTLl~~--l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~t 223 (377)
.++|+++|| .|++|++++|+||||||||||+++ ++|+++|++|.|+++|.+. .......++.+||++|++...
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~--- 100 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE--- 100 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT---
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc---
Confidence 469999999 999999999999999999999999 7899999999999999873 112234456799999987521
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCC-----
Q 017091 224 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS----- 298 (377)
Q Consensus 224 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts----- 298 (377)
+|+.+..... .. +..++++..++.++.++.+ ..|||| +|+++++||||+
T Consensus 101 --~~l~~~~~~~-~~-~~~~~l~~~~l~~~~~~~~---------~~LS~g-------------~~~~lilDe~t~~~~~~ 154 (525)
T 1tf7_A 101 --GKLFILDASP-DP-EGQEVVGGFDLSALIERIN---------YAIQKY-------------RARRVSIDSVTSVFQQY 154 (525)
T ss_dssp --TSEEEEECCC-CS-SCCSCCSSHHHHHHHHHHH---------HHHHHH-------------TCSEEEEECSTTTSTTT
T ss_pred --CcEEEEecCc-cc-chhhhhcccCHHHHHHHHH---------HHHHHc-------------CCCEEEECCHHHHHHhc
Confidence 1111100000 00 0001112223333333332 236666 488999999998
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH---------Hh-cCeEEEEeC
Q 017091 299 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI---------KA-VDRIVVIDD 346 (377)
Q Consensus 299 ~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~---------~~-~d~v~~l~~ 346 (377)
+||+..++.+.++++.+++ .|.|||++||+++.+ .. ||+|++|++
T Consensus 155 ~lD~~~~~~l~~ll~~l~~---~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 155 DASSVVRRELFRLVARLKQ---IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp CCHHHHHHHHHHHHHHHHH---HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHH---CCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 4699999999999999875 389999999999874 55 999999998
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.3e-24 Score=200.37 Aligned_cols=183 Identities=16% Similarity=0.149 Sum_probs=121.0
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC-eEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
++|+++++.+++|++++|+||||||||||++.|+|...|++| .|.+.+.+. +...+++++..+.++..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~---~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE---SVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS---CHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC---CHHHHHHHHHHHHcCCCh---hhcc
Confidence 489999999999999999999999999999999999999988 786654332 445555555555544322 2223
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH-HHHHHHHHHHcCCCCEEEEeCcCC---C---
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ-KQRIAIARAILRDPAILLLDEATS---A--- 299 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq-~QRv~iAral~~~p~illlDEPts---~--- 299 (377)
++..+. ...++..+. +.++++..+..+.. ....+|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 97 ~l~~~~---~~~~~~~~~-----~~~~l~~~~l~i~~--~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 97 SLKREI---IENGKFDQW-----FDELFGNDTFHLYD--SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHHH---HHHTHHHHH-----HHHHHSSSCEEEEC--CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred ccccCC---CCHHHHHHH-----HHHHhccCCEEEEC--CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 333210 011111111 12222222211110 114589999 67777 999999999999999999 5
Q ss_pred CCH-HHHHHHHHHHHHhhccCCCCeEEEEEecCc--h--------------------hHH-hcCeEEEEeCCEE
Q 017091 300 LDS-ESEHYVKGVLHALRNDCKTKRTVIVIAHRL--S--------------------TIK-AVDRIVVIDDGRI 349 (377)
Q Consensus 300 LD~-~~~~~i~~~l~~l~~~~~~g~tvi~itH~l--~--------------------~~~-~~d~v~~l~~G~i 349 (377)
+|+ .....+.+.|+++.++ .|.|||++||+. + .+. .||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~--~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKS--TGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHH--HCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHH--hCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 455 5667788888888653 488999999995 4 555 4999999998875
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-22 Score=193.90 Aligned_cols=75 Identities=27% Similarity=0.441 Sum_probs=67.3
Q ss_pred CCCChHHHH------HHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeE
Q 017091 268 DLLSGGQKQ------RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 268 ~~LSgGq~Q------Rv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
..||||||| |+++|||++.+|++|||||||++||+.....+.+.|+++.+ .|.|||+||||.+....||++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~---~~~~vi~~sH~~~~~~~~d~~ 323 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK---KIPQVILVSHDEELKDAADHV 323 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG---GSSEEEEEESCGGGGGGCSEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEEChHHHHHhCCEE
Confidence 469999999 67888999999999999999999999999999999998854 367999999997766679999
Q ss_pred EEEe
Q 017091 342 VVID 345 (377)
Q Consensus 342 ~~l~ 345 (377)
++|+
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.2e-23 Score=208.73 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=69.8
Q ss_pred CC-ChHHHHHHHHHHHHcCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEe
Q 017091 269 LL-SGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID 345 (377)
Q Consensus 269 ~L-SgGq~QRv~iAral~~~p--~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~ 345 (377)
.| ||||||||+|||||+.+| ++|||||||+|||+.+...+.+.|+++.+ |.|||+|||+++.+..||++++|+
T Consensus 396 ~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~----~~~vi~itH~~~~~~~~d~~~~~~ 471 (517)
T 4ad8_A 396 DVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD----TRQVLVVTHLAQIAARAHHHYKVE 471 (517)
T ss_dssp SSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH----HSEEEEECCCHHHHHHSSEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC----CCEEEEEecCHHHHHhCCEEEEEe
Confidence 46 999999999999999999 99999999999999999999999999853 689999999999888899999996
Q ss_pred CC
Q 017091 346 DG 347 (377)
Q Consensus 346 ~G 347 (377)
++
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-23 Score=221.88 Aligned_cols=164 Identities=25% Similarity=0.324 Sum_probs=119.5
Q ss_pred HHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCC----CC--CCCHHHHHHHHHHcC
Q 017091 176 FVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC----PK--DVKNEDIEWAAKQAY 249 (377)
Q Consensus 176 Ll~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~----~~--~~~~~~~~~~~~~~~ 249 (377)
...|..+.++|.+|+|.++|+++..+. .+++.+|+.+.. .. ...........+ .
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~~~------------------~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~--~ 443 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHEFT------------------ELSISEELEFLKNLNLTEREREIVGELLKEIE--K 443 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHHHH------------------HSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHH--H
T ss_pred chhcccccCChHhcCcEECCccHHHhh------------------hCCHHHHHHHHHhccCcHHHHHHHHhhHHHHH--H
Confidence 345556678899999999999874321 234444443210 00 001111111111 1
Q ss_pred HHHHHHhCCCCccc-ccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEE
Q 017091 250 VHEFILSLPCGYET-LVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 326 (377)
Q Consensus 250 l~~~~~~~~~~~~~-~~~~~~LSgGq~QRv~iAral~~~p~--illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi 326 (377)
..+++..+..++.. .....+|||||||||+|||||+++|+ +|||||||++||+.....+++.|+++++ .|.|||
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~---~G~Tvi 520 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD---LGNTVI 520 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT---TTCEEE
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh---cCCEEE
Confidence 23455555544332 22346899999999999999999887 9999999999999999999999999963 489999
Q ss_pred EEecCchhHHhcCeEEEE------eCCEEEEEcChHHHhhcC
Q 017091 327 VIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 327 ~itH~l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~~ 362 (377)
+||||++.+..||+|++| ++|++++.|+++++++..
T Consensus 521 vVtHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 521 VVEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp EECCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred EEeCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 999999998889999999 899999999999998754
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=209.97 Aligned_cols=168 Identities=12% Similarity=0.138 Sum_probs=118.8
Q ss_pred cEEEEEEEEEcCCC--CCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHH--------hhCCCCCCCeEEECCEeCCC
Q 017091 131 HVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL--------LRLYEPSDGQIYIDGFPLTD 200 (377)
Q Consensus 131 ~i~~~~v~~~y~~~--~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l--------~gl~~p~~G~I~i~g~~i~~ 200 (377)
.|++++...-+-.. ....+++|++|++++|++++|+||||||||||+|++ .|.+-|.++..
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------- 701 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------- 701 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE---------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc---------
Confidence 47787765444221 124689999999999999999999999999999999 44444432211
Q ss_pred CCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 201 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 201 ~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
++.+. .+|. .++ +.+.+ . ..+|+|++++..+
T Consensus 702 ---------~~~~d---~i~~-------~ig------------------~~d~l---~---------~~lStf~~e~~~~ 732 (934)
T 3thx_A 702 ---------VSIVD---CILA-------RVG------------------AGDSQ---L---------KGVSTFMAEMLET 732 (934)
T ss_dssp ---------EECCS---EEEE-------ECC---------------------------------------CHHHHHHHHH
T ss_pred ---------chHHH---HHHH-------hcC------------------chhhH---H---------HhHhhhHHHHHHH
Confidence 11100 0110 011 11101 0 2378888888888
Q ss_pred HHHH--cCCCCEEEEeCcCCCCCHHHHHHH-HHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHH
Q 017091 281 ARAI--LRDPAILLLDEATSALDSESEHYV-KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 281 Aral--~~~p~illlDEPts~LD~~~~~~i-~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~ 357 (377)
|+++ +.+|+++||||||+|+|+.....+ ..+++.+.++ .|+|+|++||+.+....||++..+++|++...++.++
T Consensus 733 a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~--~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 733 ASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATK--IGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHT--TCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc--CCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 8888 999999999999999999988777 6666777542 4889999999988877899999999999987766554
Q ss_pred H
Q 017091 358 L 358 (377)
Q Consensus 358 l 358 (377)
+
T Consensus 811 l 811 (934)
T 3thx_A 811 L 811 (934)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-23 Score=193.41 Aligned_cols=131 Identities=24% Similarity=0.322 Sum_probs=97.7
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC-CCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~---------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR---------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH----------
Confidence 4899999 9999999999999999999999999999998 999999987653211 1122233221
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHH
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~ 306 (377)
. .+++. ..| |++|||||..+|++|++|||| |+.+..
T Consensus 79 --------------------~-----------~gl~~----~~l------~~~la~aL~~~p~illlDEp~---D~~~~~ 114 (261)
T 2eyu_A 79 --------------------E-----------VGEDT----KSF------ADALRAALREDPDVIFVGEMR---DLETVE 114 (261)
T ss_dssp --------------------E-----------BTTTB----SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHH
T ss_pred --------------------H-----------hCCCH----HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHH
Confidence 0 01110 112 899999999999999999999 988765
Q ss_pred HHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEe
Q 017091 307 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID 345 (377)
Q Consensus 307 ~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~ 345 (377)
.+ ++... .|.+|++++|+.+....|||+++|.
T Consensus 115 ~~---l~~~~----~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 115 TA---LRAAE----TGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HH---HHHHH----TTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HH---HHHHc----cCCEEEEEeCcchHHHHHHHHhhhc
Confidence 44 33332 4789999999988655678775553
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-22 Score=208.21 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=113.7
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHh-cCC
Q 017091 154 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM-YGC 232 (377)
Q Consensus 154 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~-~~~ 232 (377)
+..+++|++++|+||||||||||++.++|...|. |+ +.+.|++|++. ..+.++.. ++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g- 332 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWG- 332 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTS-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcC-
Confidence 4489999999999999999999999999998874 53 11456666652 23334432 22
Q ss_pred CCCCCHHHHHHHHHHcCHHHHHHhCCCCccc--ccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHH-----HH
Q 017091 233 PKDVKNEDIEWAAKQAYVHEFILSLPCGYET--LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE-----SE 305 (377)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~-----~~ 305 (377)
...++ +.. .++.. ...+..|||||+||+++||++..+|++||+| ||++||+. .+
T Consensus 333 ---~~~~~------------~~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 333 ---MDFEE------------MER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp ---CCHHH------------HHH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred ---CCHHH------------HHh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 11111 111 01111 1123569999999999999999999999999 99999999 89
Q ss_pred HHHHHHHHHhhccCCCCeEEEEEecCc----------hhHHh-cCeEEEEeCCE
Q 017091 306 HYVKGVLHALRNDCKTKRTVIVIAHRL----------STIKA-VDRIVVIDDGR 348 (377)
Q Consensus 306 ~~i~~~l~~l~~~~~~g~tvi~itH~l----------~~~~~-~d~v~~l~~G~ 348 (377)
+.+.++++.+++ .|.|+|++||+. ..+.. ||+|++|++|+
T Consensus 394 ~~i~~ll~~l~~---~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQ---EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHH---TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHh---CCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999999988864 489999999999 66665 99999999886
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-23 Score=192.34 Aligned_cols=170 Identities=11% Similarity=0.137 Sum_probs=104.3
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
+++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++.....|+.+
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~ 77 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAEQ 77 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHhH
Confidence 46999999999999999999999999999999999976 655554 2467899999996333579999
Q ss_pred HHhcCCCC-CCC-HHH--HHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCH
Q 017091 227 NIMYGCPK-DVK-NED--IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302 (377)
Q Consensus 227 ni~~~~~~-~~~-~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~ 302 (377)
|+.+.... ... .+. ..... +.++.+...... ....||+||+||+++ ++++.+|+++|+|||....|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~------~~L~~l~~~~~~--~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~ 148 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMH------RTLKNIVEGKTV--EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ 148 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHH------HHHHHHHTTCCE--EECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH
T ss_pred hhhhhccCCCCCCcccccHHHHH------HHHHHHHCCCCe--ecccccccccCccCc-eEEecCCCEEEEeCccccccH
Confidence 87643211 111 110 11111 111111111111 125699999999988 688999999999999888876
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEEecCchhH-Hh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 303 ~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~-~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
. +.++ .+.+|+++||+...+ +. ++++ ++|+ +.+++.+
T Consensus 149 ~--------l~~~-----~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 149 E--------IRDM-----FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp H--------HHTT-----CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred H--------HHHh-----cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 3 2222 378999999974444 44 4444 6664 5666653
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-22 Score=183.60 Aligned_cols=149 Identities=22% Similarity=0.222 Sum_probs=101.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-------CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-------SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 228 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni 228 (377)
.|++|++++|+||||||||||+++|+|.+.| ..|.+++++.+. .. .+++++++|+..++..++.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999996555 344778877542 11 2347778888777766888888
Q ss_pred hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH-------cCCCCEEEEeCcCCCCC
Q 017091 229 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI-------LRDPAILLLDEATSALD 301 (377)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral-------~~~p~illlDEPts~LD 301 (377)
.+.... .... +++.+..++++ ..+|+++++||||+.+|
T Consensus 95 ~~~~~~--~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 95 YVARAF--NSNH---------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp EEEECC--SHHH---------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred EEEecC--ChHH---------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 764221 1111 11112222222 35899999999999999
Q ss_pred HH-------H-----HHHHHHHHHHhhccCCCCeEEEEEecCch----hHHh-cCeEEEEeCC
Q 017091 302 SE-------S-----EHYVKGVLHALRNDCKTKRTVIVIAHRLS----TIKA-VDRIVVIDDG 347 (377)
Q Consensus 302 ~~-------~-----~~~i~~~l~~l~~~~~~g~tvi~itH~l~----~~~~-~d~v~~l~~G 347 (377)
+. . ...+.+.|.++.++ .|.|||++||..+ .+.. ||++++|++|
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~--~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANL--YDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHH--HTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHH--CCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 84 2 12566666666543 4899999999554 4765 8999999875
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-22 Score=210.42 Aligned_cols=148 Identities=20% Similarity=0.201 Sum_probs=110.3
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-CCCCeEEECCEeCCCCCHHHHhc
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
+.|++++...-.-...+..+++|+||+ |++++|+||||||||||+|+|+|+.. |+.|.+. + . .+.
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p--a-----~~~ 614 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P--A-----EEA 614 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S--S-----SEE
T ss_pred CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e--h-----hcc
Confidence 358888873322110124699999999 99999999999999999999999974 7788652 1 0 134
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH--c
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--L 285 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral--~ 285 (377)
.+++++| +| ..++.||+.. .+|+|++|++.+|+++ +
T Consensus 615 ~i~~v~~---i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~~a 653 (765)
T 1ewq_A 615 HLPLFDG---IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILKEA 653 (765)
T ss_dssp EECCCSE---EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHHHC
T ss_pred ceeeHHH---hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHHhc
Confidence 6888877 44 3466555432 2689999999999999 9
Q ss_pred CCCCEEEEeCc---CCCCCHHHH-HHHHHHHHHhhccCCCCeEEEEEecCchhHHhc
Q 017091 286 RDPAILLLDEA---TSALDSESE-HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV 338 (377)
Q Consensus 286 ~~p~illlDEP---ts~LD~~~~-~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~ 338 (377)
.+|+++||||| |++||+.+. ..+.+.+.+ .|.|+|++||+.+....+
T Consensus 654 ~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~------~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 654 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHE------RRAYTLFATHYFELTALG 704 (765)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH------HTCEEEEECCCHHHHTCC
T ss_pred cCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh------CCCEEEEEeCCHHHHHhh
Confidence 99999999999 999999875 467777765 278999999998876543
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.7e-22 Score=210.94 Aligned_cols=181 Identities=20% Similarity=0.263 Sum_probs=129.0
Q ss_pred CCCCcHHHHHHHHhhC---------CCCCCCeEEECCEeCCC---CCHHHHhcceEEEccCCcCccccHHHHHhcCCCCC
Q 017091 168 LSGSGKSTFVNLLLRL---------YEPSDGQIYIDGFPLTD---LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 235 (377)
Q Consensus 168 ~nGsGKSTLl~~l~gl---------~~p~~G~I~i~g~~i~~---~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 235 (377)
.+..||+++.+.+... +.|.+|+|.++|+++.+ ++..+....+.-++|++... .+ +...+.
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~-~~--~~~~~~---- 342 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPG-HA--ERVKNR---- 342 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSC-ST--TSSSSC----
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhc-cc--chhhcc----
Confidence 4567899999887763 56789999999998866 33333333333334433211 11 111121
Q ss_pred CCHHHHH-----HHHHHcCHHHHHHhCCCCccc-ccCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCcCCCCCHHHHHH
Q 017091 236 VKNEDIE-----WAAKQAYVHEFILSLPCGYET-LVDDDLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHY 307 (377)
Q Consensus 236 ~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~-~~~~~~LSgGq~QRv~iAral~~~p--~illlDEPts~LD~~~~~~ 307 (377)
.....+. +..++ +. .+..+..++.+ .....+|||||||||+||++|..+| ++|||||||++||+...+.
T Consensus 343 ~~~~~i~~~i~~ei~~r--l~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~ 419 (842)
T 2vf7_A 343 PEQAIALQRMAADLVKR--LD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEA 419 (842)
T ss_dssp SSHHHHHHHHHHHHHHH--HH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHH
T ss_pred hhhHHHHHHHHHHHHHH--HH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHH
Confidence 1111111 12122 22 35555554322 2223689999999999999999999 5999999999999999999
Q ss_pred HHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE------eCCEEEEEcChHHHhhc
Q 017091 308 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHK 361 (377)
Q Consensus 308 i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~ 361 (377)
+.+.|+++++ .|.|||+|+||++.+..||+|++| ++|+++..|+++++...
T Consensus 420 L~~~l~~L~~---~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 420 LLSALENLKR---GGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp HHHHHHHHHT---TTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred HHHHHHHHHH---cCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 9999999964 489999999999988779999999 79999999999998875
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-21 Score=206.84 Aligned_cols=136 Identities=22% Similarity=0.379 Sum_probs=104.8
Q ss_pred ccccHHHHHhcCCCCCCCHHH-------HHHHHHHcCHHHHHHhCCCCccc-ccCCCCCChHHHHHHHHHHHHcCCC--C
Q 017091 220 LQMDIKSNIMYGCPKDVKNED-------IEWAAKQAYVHEFILSLPCGYET-LVDDDLLSGGQKQRIAIARAILRDP--A 289 (377)
Q Consensus 220 ~~~tv~eni~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~LSgGq~QRv~iAral~~~p--~ 289 (377)
..+||.|++.|........++ +.+..++ + +++..+..++.+ .....+|||||+|||+||++|..+| +
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~R--l-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ 526 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDR--L-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGV 526 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHH--H-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--H-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCC
Confidence 467898988874222222211 1122222 2 345555554332 2234689999999999999999985 9
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE------eCCEEEEEcChHHHhhc
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHK 361 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l------~~G~i~~~g~~~~l~~~ 361 (377)
+|||||||++||+...+.+.+.|+++++ .|.|||+|+||++++..||+|++| ++|++++.|+++++...
T Consensus 527 llILDEPTagLdp~~~~~L~~~L~~Lr~---~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 527 LYVLDEPSIGLHQRDNDRLIATLKSMRD---LGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp EEEEECTTTTCCGGGHHHHHHHHHHHHT---TTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred EEEEeCcccCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 9999999999999999999999999964 589999999999998889999999 79999999999998764
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-23 Score=195.71 Aligned_cols=164 Identities=16% Similarity=0.109 Sum_probs=83.7
Q ss_pred EEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC-CCCCCCeEEECCEeCCCCCHHHHhcceEEE
Q 017091 135 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLDIRWLREKIGFV 213 (377)
Q Consensus 135 ~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl-~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 213 (377)
+||++.|++ +.++++++|+| +|+||||||||||++.|.|. ..|++| |.++|.++.. . .. .+.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t-~~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T-VQ-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c-ce-EeeEEEE
Confidence 478999975 36999999988 99999999999999999998 889999 9888877643 1 11 3568999
Q ss_pred ccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEE
Q 017091 214 GQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 292 (377)
Q Consensus 214 ~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ill 292 (377)
+|+..++ ..|+.|+..++.... ..+......+. +.+..+..+ .++|||||||+.+|||++ +++
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~-~~e~~~~l~~~--l~~~~~~~~---------~~~sgg~rqrv~~ara~~----ll~ 132 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAIN-CRDCFKTIISY--IDEQFERYL---------HDESGLNRRHIIDNRVHC----CFY 132 (301)
T ss_dssp EC---CCEEEEEEEEC------------CTTHHHH--HHHHHHHHH---------HHHTSSCCTTCCCCCCCE----EEE
T ss_pred ecCCCcccCcchhhhhhhhhhcC-cHHHHHHHHHH--HHHHHHHHH---------HHhCHHhhhhhhhhhhhh----eee
Confidence 9987665 678988877653211 00110011110 112222211 348999999999999986 999
Q ss_pred EeCcCCC-CCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch
Q 017091 293 LDEATSA-LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 333 (377)
Q Consensus 293 lDEPts~-LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~ 333 (377)
+||||++ ||+... +.++++.+ ..+.++|+.+||+.
T Consensus 133 ldePt~~~Ld~~~~----~~l~~l~~--~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 133 FISPFGHGLKPLDV----AFMKAIHN--KVNIVPVIAKADTL 168 (301)
T ss_dssp EECSSSSSCCHHHH----HHHHHHTT--TSCEEEEECCGGGS
T ss_pred eecCcccCCCHHHH----HHHHHHHh--cCCEEEEEEeCCCC
Confidence 9999985 999863 45555543 24789999999984
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-21 Score=191.68 Aligned_cols=74 Identities=27% Similarity=0.372 Sum_probs=67.2
Q ss_pred CCChHHHHHHHHHHHHc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE
Q 017091 269 LLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 344 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~----~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l 344 (377)
.||||||||++||++|+ .+|+++||||||++||+.....+.+.|.++.+ .+.++|+|||+...+..||+++++
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~---~~~~~ii~th~~~~~~~~d~~~~~ 409 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN---PDLQFIVISLKNTMFEKSDALVGV 409 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB---TTBEEEEECSCHHHHTTCSEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHhCCEEEEE
Confidence 39999999999999999 68999999999999999999999999998742 367999999998777779999998
Q ss_pred e
Q 017091 345 D 345 (377)
Q Consensus 345 ~ 345 (377)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-23 Score=217.43 Aligned_cols=191 Identities=17% Similarity=0.227 Sum_probs=120.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeee----------eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-CCCeEEECCEeCC
Q 017091 131 HVQFVNISFHYPSRPTVPILNHV----------CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLT 199 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~i----------sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i~g~~i~ 199 (377)
.++++|+++.|++. .+++|+.+ +++++. +||+||||||||||+++|+|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 47899999999642 12455554 366665 999999999999999999999988 8999999999863
Q ss_pred C--CC-HHHHhcceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHH
Q 017091 200 D--LD-IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 275 (377)
Q Consensus 200 ~--~~-~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~ 275 (377)
. .+ ...+++.++|+||++.++ ..||++|+.+.. .. ...... .+| +
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~----------~~---------~~~~~~---------~~s---~ 134 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ----------NA---------IAGEGM---------GIS---H 134 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH----------HH---------HHCSSS---------CCC---S
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH----------HH---------hcCCcc---------ccc---h
Confidence 1 11 234678899999999887 579999886520 00 000000 111 1
Q ss_pred HHHHHHHHHcCCCCEEEEeCc------CCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH--------Hh----
Q 017091 276 QRIAIARAILRDPAILLLDEA------TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI--------KA---- 337 (377)
Q Consensus 276 QRv~iAral~~~p~illlDEP------ts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~--------~~---- 337 (377)
+++.++.+....|+++|+||| |++||+..+..+.++++++.+. ..+.+++++||+++.. ..
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~-~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQR-QETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTS-SSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhc-CCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 334444455568999999999 9999999999999999996433 3478899999998632 22
Q ss_pred -cCeEEEEeCCEEEEEcChHH
Q 017091 338 -VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 338 -~d~v~~l~~G~i~~~g~~~~ 357 (377)
...|+|+.++.++..|+.++
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTC
T ss_pred CCceEEEecchhhcCcccHHH
Confidence 24588999888887776543
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.2e-23 Score=182.75 Aligned_cols=157 Identities=18% Similarity=0.217 Sum_probs=108.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHH
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 239 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~ 239 (377)
|++++|+||||||||||+++|+|+++ ++| |.++|.+.... ..+++++||++|+.. ++ ++++... .....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~~---g~-~~~l~~~-~~~~~-- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTLS---GT-RGPLSRV-GLEPP-- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEETT---SC-EEEEEEC-CCCCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEecc---cc-eehhhcc-cccCC--
Confidence 78999999999999999999999999 999 99999887543 245788999999862 11 1122110 00000
Q ss_pred HHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHH-HHHH---HHcCCCCEEEEeC--cCCCCCHHHHHHHHHH
Q 017091 240 DIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRI-AIAR---AILRDPAILLLDE--ATSALDSESEHYVKGV 311 (377)
Q Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv-~iAr---al~~~p~illlDE--Pts~LD~~~~~~i~~~ 311 (377)
+......++ ...+|+|||+++ ++++ |++.+|+++|+|| |+..+|+...+.+.+.
T Consensus 70 ------------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 70 ------------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp ------------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred ------------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 000001122 135899999998 5555 6899999999999 8999999876666666
Q ss_pred HHHhhccCCCCeEEEE----EecCchhHHhcCeEEEEeCCEEEEEc
Q 017091 312 LHALRNDCKTKRTVIV----IAHRLSTIKAVDRIVVIDDGRIIEVG 353 (377)
Q Consensus 312 l~~l~~~~~~g~tvi~----itH~l~~~~~~d~v~~l~~G~i~~~g 353 (377)
+.. ..++|+ |+||.+ ...+|+|..+++|+|++..
T Consensus 132 l~~-------~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 132 LST-------PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHC-------SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred HhC-------CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 552 234443 349875 3346777777888888754
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-20 Score=158.42 Aligned_cols=79 Identities=25% Similarity=0.433 Sum_probs=69.7
Q ss_pred CCCChHHHHHHHHH------HHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeE
Q 017091 268 DLLSGGQKQRIAIA------RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 341 (377)
Q Consensus 268 ~~LSgGq~QRv~iA------ral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v 341 (377)
.+||||||||++|| |||+.+|+++||||||++||+.+...+.+.+.++.+ .|.|||+|||+++....||++
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiiivsH~~~~~~~~d~i 132 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK---KIPQVILVSHDEELKDAADHV 132 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG---GSSEEEEEESCGGGGGGCSEE
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc---cCCEEEEEEChHHHHHhCCEE
Confidence 57999999999876 999999999999999999999999999999998854 378999999999655569999
Q ss_pred EEE--eCCEE
Q 017091 342 VVI--DDGRI 349 (377)
Q Consensus 342 ~~l--~~G~i 349 (377)
++| ++|..
T Consensus 133 i~l~~~~g~s 142 (148)
T 1f2t_B 133 IRISLENGSS 142 (148)
T ss_dssp EEEEEETTEE
T ss_pred EEEEcCCCeE
Confidence 999 45643
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-21 Score=190.07 Aligned_cols=164 Identities=23% Similarity=0.231 Sum_probs=111.6
Q ss_pred Cceeee-eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC--CCCC----Ce-EEECCEeCCCCCHHHHhcceEEEccCCcC
Q 017091 148 PILNHV-CLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSD----GQ-IYIDGFPLTDLDIRWLREKIGFVGQEPQL 219 (377)
Q Consensus 148 ~vL~~i-sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~--~p~~----G~-I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 219 (377)
+.|+.+ ++.|++|++++|+||||||||||++.+++.. +|++ |+ |++++.+. . .++++++++|.+.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~----~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F----RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C----CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C----CHHHHHHHHHHcCC
Confidence 356666 6899999999999999999999999999998 6776 67 89998764 1 13568889999888
Q ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc-------CCCCEEE
Q 017091 220 LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL-------RDPAILL 292 (377)
Q Consensus 220 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~-------~~p~ill 292 (377)
+..++.+|+.+... .. |.+|+|++.++++++ .+|+++|
T Consensus 192 ~~~~v~~ni~~~~~--~~---------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 192 DPDEVLKHIYVARA--FN---------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp CHHHHGGGEEEEEC--CS---------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred CHHHHhhCEEEEec--CC---------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 76788999877421 11 233445555555554 7899999
Q ss_pred EeCcCCCCCHHH------------HHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcC
Q 017091 293 LDEATSALDSES------------EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 293 lDEPts~LD~~~------------~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~ 354 (377)
+||||+++|+.. ..+++..|.++.++ .+.|||+++|....... ++.......|++++++.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~--~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANL--YDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEECC---------------CCCCCTTC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHH--cCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 999999999862 24455555555443 48899999998775532 33445555666555444
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-21 Score=175.95 Aligned_cols=167 Identities=10% Similarity=0.024 Sum_probs=116.8
Q ss_pred CCceeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHh---cceEEEccCCcCccc
Q 017091 147 VPILNHVCL-TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR---EKIGFVGQEPQLLQM 222 (377)
Q Consensus 147 ~~vL~~isl-~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r---~~i~~v~Q~~~l~~~ 222 (377)
.+.|+++.. .+++|++++|+||||||||||++.|++...+.+|.|.+.+.+. +...++ ..+++.+|+....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-- 83 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIEK-- 83 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBTT--
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhhC--
Confidence 357899988 8999999999999999999999999998888889988866543 222222 2344444432110
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCcCCCC
Q 017091 223 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSAL 300 (377)
Q Consensus 223 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~--illlDEPts~L 300 (377)
++.+- . .... . .. + .+ . ....|.++.++...+.+...+|+ ++++||||+.+
T Consensus 84 ----~~~~~-~-~~~~-~-------------~~--~-~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 84 ----KLIII-D-ALMK-E-------------KE--D-QW---S-LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp ----TEEEE-E-CCC--------------------C-TT---B-CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred ----CEEEE-e-cccc-c-------------cC--c-ee---e-ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 11110 0 0000 0 00 0 00 0 02359999999888888888999 99999999888
Q ss_pred --CHHHHHHHHHHHHHhhccCCCCeEEEEEecCc--------hhHHh-cCeEEEEeCC
Q 017091 301 --DSESEHYVKGVLHALRNDCKTKRTVIVIAHRL--------STIKA-VDRIVVIDDG 347 (377)
Q Consensus 301 --D~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l--------~~~~~-~d~v~~l~~G 347 (377)
|+.....+.+.|+++.++ .|.|||++||+. ..+.. ||+|++|+..
T Consensus 137 ~~d~~~~~~~~~~l~~~~~~--~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 137 LDKPAMARKISYYLKRVLNK--WNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSCGGGHHHHHHHHHHHHHH--TTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHh--CCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 998888999999888653 489999999999 44655 9999999854
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-21 Score=206.32 Aligned_cols=158 Identities=15% Similarity=0.168 Sum_probs=104.1
Q ss_pred cEEEEEEEEEc-----CCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH
Q 017091 131 HVQFVNISFHY-----PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 205 (377)
Q Consensus 131 ~i~~~~v~~~y-----~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~ 205 (377)
.|.+++...-. +. .+..|++|+||++++|++++|+||||||||||+|+++++.-..
T Consensus 640 ~i~i~~~rHP~le~~~~~-~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a------------------ 700 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGE-QDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA------------------ 700 (918)
T ss_dssp EEEEEEECCHHHHHHTCS-CSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH------------------
T ss_pred cEEEEeccchhhhhhhcc-CCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh------------------
Confidence 47777654322 11 1347999999999999999999999999999999997642110
Q ss_pred HhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 206 LREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 206 ~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
+.-.++|++...+ .+.+.+.- ..++.+.+.. +...+|+|++|++.|+++ +
T Consensus 701 --q~g~~vpa~~~~i--~~~d~i~~----------------~ig~~d~l~~---------~~stfs~em~~~~~il~~-a 750 (918)
T 3thx_B 701 --QIGSYVPAEEATI--GIVDGIFT----------------RMGAADNIYK---------GRSTFMEELTDTAEIIRK-A 750 (918)
T ss_dssp --HHTCCBSSSEEEE--ECCSEEEE----------------EC-------------------CCHHHHHHHHHHHHHH-C
T ss_pred --hcCccccchhhhh--hHHHHHHH----------------hCChHHHHHH---------hHHHhhHHHHHHHHHHHh-c
Confidence 0011233221100 00000100 0011111111 014689999999999999 8
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHH-HHHHHhhccCCCCeEEEEEecCchhHHhcC
Q 017091 286 RDPAILLLDEATSALDSESEHYVK-GVLHALRNDCKTKRTVIVIAHRLSTIKAVD 339 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~-~~l~~l~~~~~~g~tvi~itH~l~~~~~~d 339 (377)
.+|+++||||||+|||+.....+. .+++.+.++ .|.|+|++||+++....||
T Consensus 751 ~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~--~g~tvl~vTH~~el~~l~~ 803 (918)
T 3thx_B 751 TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRD--VKSLTLFVTHYPPVCELEK 803 (918)
T ss_dssp CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHT--TCCEEEEECSCGGGGGHHH
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHh--cCCeEEEEeCcHHHHHHHh
Confidence 999999999999999999888887 667776542 4889999999998765444
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.4e-22 Score=188.77 Aligned_cols=166 Identities=19% Similarity=0.127 Sum_probs=110.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH----HHH--hcceEEEccCCcCc-cccHHHHHhcC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWL--REKIGFVGQEPQLL-QMDIKSNIMYG 231 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~----~~~--r~~i~~v~Q~~~l~-~~tv~eni~~~ 231 (377)
+|++++|+||||||||||+++|+|+++|++|+|.++|.|+..... ..+ +..++|++|++.++ ..++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999865431 122 45699999999877 46889998653
Q ss_pred CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCcCCCCCHHHHHHHH
Q 017091 232 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSESEHYVK 309 (377)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~--illlDEPts~LD~~~~~~i~ 309 (377)
.. ..... .+++. + |... .....++..++||++||||++.+|+ ++.|| |+++. .+.
T Consensus 181 ~~------------~~~d~-~llDt-~-G~~~-~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~------~~~ 237 (304)
T 1rj9_A 181 KA------------RGYDL-LFVDT-A-GRLH-TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQ------NGL 237 (304)
T ss_dssp HH------------HTCSE-EEECC-C-CCCT-TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCT------HHH
T ss_pred Hh------------CCCCE-EEecC-C-CCCC-chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHH------HHH
Confidence 10 00000 00111 1 1100 0001246667999999999999999 45555 44444 444
Q ss_pred HHHHHhhccCCCCeEEEEEecCchhHHh----------cCeEEEEeCCEE
Q 017091 310 GVLHALRNDCKTKRTVIVIAHRLSTIKA----------VDRIVVIDDGRI 349 (377)
Q Consensus 310 ~~l~~l~~~~~~g~tvi~itH~l~~~~~----------~d~v~~l~~G~i 349 (377)
+.++++.+. .|.|+|++||+.+..+. --.|.++-.|+-
T Consensus 238 ~~~~~~~~~--~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge~ 285 (304)
T 1rj9_A 238 EQAKKFHEA--VGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEG 285 (304)
T ss_dssp HHHHHHHHH--HCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSSS
T ss_pred HHHHHHHHH--cCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCCC
Confidence 555555432 37899999998544211 135677776653
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-23 Score=187.31 Aligned_cols=143 Identities=12% Similarity=0.110 Sum_probs=105.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc---cccHHHHHhcCC-
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL---QMDIKSNIMYGC- 232 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~---~~tv~eni~~~~- 232 (377)
.++|+++||+||||||||||+++|+|++.| .++|++|++.++ ..|+.+|+.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999875 589999999776 357888876532
Q ss_pred -CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH----HHHHHHHHHHcCCCCEEEEeCcCCC-------C
Q 017091 233 -PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ----KQRIAIARAILRDPAILLLDEATSA-------L 300 (377)
Q Consensus 233 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq----~QRv~iAral~~~p~illlDEPts~-------L 300 (377)
+.....+.+.+.++..++.+. .. .....+|+|| +||+++||+++.+|+++++||||++ |
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~-------~~--~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLP-------VE--MPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCC-------EE--ECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCC-------cC--CCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 111223334444333221111 11 1224689996 5789999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 017091 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 332 (377)
Q Consensus 301 D~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l 332 (377)
|+..+..+.+.+.+..++ +|+|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~--~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLE--RGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHH--SCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 999999899888765322 478999999984
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-24 Score=209.80 Aligned_cols=228 Identities=13% Similarity=0.115 Sum_probs=150.6
Q ss_pred HHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccc-ccccc
Q 017091 54 AVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ-RLMGH 131 (377)
Q Consensus 54 ~~~~g~~~v~~-g~lt~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~-~~~~~ 131 (377)
+.+.|++.+.. +.+|.+.+.+|+.+...+..| .+......+..+..+..|+..++ +|............ .....
T Consensus 51 v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~ 126 (361)
T 2gza_A 51 CERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTR 126 (361)
T ss_dssp EEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCC
T ss_pred EEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCC
Confidence 34567776665 889999999988877766554 22222222333344556777666 33321110001110 01122
Q ss_pred E---------EEEEEEEE---cCCCCCCCce---------eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCe
Q 017091 132 V---------QFVNISFH---YPSRPTVPIL---------NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 190 (377)
Q Consensus 132 i---------~~~~v~~~---y~~~~~~~vL---------~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~ 190 (377)
+ +++||+|+ |+.. +.++| +++||++++|++++|+||||||||||+++|+|+++|++|.
T Consensus 127 itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~ 205 (361)
T 2gza_A 127 RTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL 205 (361)
T ss_dssp CCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE
T ss_pred CCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE
Confidence 4 78899998 8531 12355 9999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHHhcceEEEc-cCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCC
Q 017091 191 IYIDGFPLTDLDIRWLREKIGFVG-QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL 269 (377)
Q Consensus 191 I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 269 (377)
|.++|. ..+.....++.++|++ |++.+ +
T Consensus 206 I~ie~~--~e~~~~~~~~~v~~v~~q~~~~----------------------------------------~--------- 234 (361)
T 2gza_A 206 ITIEDV--PELFLPDHPNHVHLFYPSEAKE----------------------------------------E--------- 234 (361)
T ss_dssp EEEESS--SCCCCTTCSSEEEEECC-------------------------------------------------------
T ss_pred EEECCc--cccCccccCCEEEEeecCcccc----------------------------------------c---------
Confidence 999985 2333333567789998 65421 0
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCC
Q 017091 270 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG 347 (377)
Q Consensus 270 LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G 347 (377)
++++..+|-.|++++..+|+.+++|||.. .++.+.++.+.. ...|++.++|..+....+||+..|..+
T Consensus 235 ~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~---g~~~~l~t~H~~~~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 235 ENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAAS---GHGGSITSCHAGSCELTFERLALMVLQ 302 (361)
T ss_dssp ----CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHT---TCCSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred cccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhc---CCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 12333478888889989999999999986 234556666642 234789999997755568888877765
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-23 Score=203.58 Aligned_cols=178 Identities=16% Similarity=0.095 Sum_probs=127.0
Q ss_pred ceeeeeEEEeC--CcEEEEEcCCCCcHHHHHHHHhhCCCCCC----CeEEEC----CEeCCCCCHHHHhcceEEEccCCc
Q 017091 149 ILNHVCLTIEA--NEVVAIVGLSGSGKSTFVNLLLRLYEPSD----GQIYID----GFPLTDLDIRWLREKIGFVGQEPQ 218 (377)
Q Consensus 149 vL~~isl~i~~--Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~----G~I~i~----g~~i~~~~~~~~r~~i~~v~Q~~~ 218 (377)
+.+.|+++|++ |++++|+||||||||||+++|+|+++|++ |+|.++ |.++ ..+..++ .+|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45789999999 99999999999999999999999999999 999873 5544 3334444 45999999988
Q ss_pred CccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc-CCCCEEEEeC--
Q 017091 219 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL-RDPAILLLDE-- 295 (377)
Q Consensus 219 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~-~~p~illlDE-- 295 (377)
+|..|+.||+.++.. .... . . . ..+|+|++||..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~---~~~~--~---~------~-------------~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~ 287 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDT---DFIT--T---Q------A-------------FCIQYEGKAHPFLDSMIKEYPFDVTILLKNN 287 (365)
T ss_dssp HHHHHHCSSEEEESS---CHHH--H---H------H-------------HHHHHHSCCCHHHHHHHHHSCCSEEEEEECC
T ss_pred HHHHhccCCEEEEeC---CchH--H---H------H-------------HHHHHcCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 888899999987532 1100 0 0 0 013567788888888874 6999999999
Q ss_pred -cC------CCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHh
Q 017091 296 -AT------SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 296 -Pt------s~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
|+ +++|+..+..+.+.|.++.++ .+.++|+++|.-.....++++..+++ ++..++++++.
T Consensus 288 ~p~~~~g~~~sld~~~r~~l~~~l~~l~~~--~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 288 TEWVDDGLRSLGSQKQRQQFQQLLKKLLDK--YKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQ 354 (365)
T ss_dssp CC-----------CCSHHHHHHHHHHHHHG--GGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCC
T ss_pred CCcccCCCcCCccHHHHHHHHHHHHHHHHH--cCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhh
Confidence 65 589999999999999876532 36799999976333233666666543 34455555553
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-22 Score=176.60 Aligned_cols=136 Identities=15% Similarity=0.206 Sum_probs=96.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCC---CCeEEECCEeCCCCC---HHHHh-cceE----EEccCCcCccccHHHHHh
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLD---IRWLR-EKIG----FVGQEPQLLQMDIKSNIM 229 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~i~~~~---~~~~r-~~i~----~v~Q~~~l~~~tv~eni~ 229 (377)
++++|+|+||||||||+++|+|+++|+ .|.|.+||.++.+++ ...+| +++| +++|++.+| +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 589999999999999999999999998 899999999876654 34566 4678 899988776 111
Q ss_pred cCCCCCCCHHHHHHHHHHcCHHHHHHh-CCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE-------EEeCcCCC--
Q 017091 230 YGCPKDVKNEDIEWAAKQAYVHEFILS-LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL-------LLDEATSA-- 299 (377)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~il-------llDEPts~-- 299 (377)
+ .. +. .+++.+++.. +| ++++.+++. |||||+||++||||++++|++. +=|.|..+
T Consensus 77 -~-----~~-~~-----~a~l~~~i~~~l~-g~dt~i~Eg-lSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~ 142 (171)
T 2f1r_A 77 -V-----SE-EE-----GNDLDWIYERYLS-DYDLVITEG-FSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHK 142 (171)
T ss_dssp -C-----CH-HH-----HTCHHHHHHHHTT-TCSEEEEES-CGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSC
T ss_pred -C-----Ch-hh-----hhCHHHHHHhhCC-CCCEEEECC-cCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCc
Confidence 1 11 11 5688999998 99 999998865 9999999999999999999873 22444322
Q ss_pred -CCHHHHHHHHHHHHHhh
Q 017091 300 -LDSESEHYVKGVLHALR 316 (377)
Q Consensus 300 -LD~~~~~~i~~~l~~l~ 316 (377)
+|....+.+.+.+.+..
T Consensus 143 ~f~~~~~~~~a~~i~~~~ 160 (171)
T 2f1r_A 143 WFRRDEVERIAEFILSLL 160 (171)
T ss_dssp EECTTCHHHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHHH
Confidence 33344456667665543
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.6e-22 Score=177.57 Aligned_cols=170 Identities=20% Similarity=0.230 Sum_probs=96.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC-----CCCCCeEEEC-------CEeC
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY-----EPSDGQIYID-------GFPL 198 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~-----~p~~G~I~i~-------g~~i 198 (377)
.|+++|++|.|+. +++++ |.+++|..++|+|+||||||||++.|+|.. .|+.|.+.+. +..+
T Consensus 3 ~l~~~~~~~~~~~----~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l 76 (210)
T 1pui_A 3 NLNYQQTHFVMSA----PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL 76 (210)
T ss_dssp --------CEEEE----SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE
T ss_pred chhhhhhhheeec----CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE
Confidence 4789999999962 47888 899999999999999999999999999998 8888877542 2222
Q ss_pred C---CCC--------HHHHhcceEEEccCCcCcc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC
Q 017091 199 T---DLD--------IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 266 (377)
Q Consensus 199 ~---~~~--------~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 266 (377)
. ... ...+++.+++++|....+. ..+..++..+ ..... .+ +.+++........-...
T Consensus 77 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~----~~~~~-~~------~~~~~~~~~~~~~~v~n 145 (210)
T 1pui_A 77 VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP----LKDLD-QQ------MIEWAVDSNIAVLVLLT 145 (210)
T ss_dssp EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC----CCHHH-HH------HHHHHHHTTCCEEEEEE
T ss_pred EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC----CchhH-HH------HHHHHHHcCCCeEEEEe
Confidence 1 110 0122333444444332221 1221122211 11111 01 11222221111000011
Q ss_pred -CCCCChHHHHH-HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc
Q 017091 267 -DDLLSGGQKQR-IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 317 (377)
Q Consensus 267 -~~~LSgGq~QR-v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~ 317 (377)
...+|+||+|| +..+++++.+|+++++|||||++|+....++.+.|.++..
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 24689999999 8999999999999999999999999999999999988753
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-20 Score=180.48 Aligned_cols=146 Identities=23% Similarity=0.257 Sum_probs=102.0
Q ss_pred EEEEEEcCCCCCCCceeeeeE-------EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC-CCeEEECCEeCCCCCHHHH
Q 017091 135 VNISFHYPSRPTVPILNHVCL-------TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWL 206 (377)
Q Consensus 135 ~~v~~~y~~~~~~~vL~~isl-------~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~~i~~~~~~~~ 206 (377)
.+++++|... ..+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ +|.|...+.++. +. .
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---h
Confidence 4566666432 2456777776 78899999999999999999999999999987 566654443332 21 1
Q ss_pred hcceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 207 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 207 r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
+...++++|...... . ++-.+ +|||||..
T Consensus 167 ~~~~~~v~q~~~~~~-------------~----------------------------------~~~~~----~La~aL~~ 195 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD-------------T----------------------------------LGFSE----ALRSALRE 195 (356)
T ss_dssp CCSSSEEEEEEBTTT-------------B----------------------------------SCHHH----HHHHHTTS
T ss_pred hccccceeeeeeccc-------------c----------------------------------CCHHH----HHHHHhhh
Confidence 233456665432110 0 01111 99999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeC
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~ 346 (377)
+|++|++|||| |+++.+.+.+ +.. .|.||++++|+.+.+..+||++.|..
T Consensus 196 ~PdvillDEp~---d~e~~~~~~~----~~~---~G~~vl~t~H~~~~~~~~dRli~l~~ 245 (356)
T 3jvv_A 196 DPDIILVGEMR---DLETIRLALT----AAE---TGHLVFGTLHTTSAAKTIDRVVDVFP 245 (356)
T ss_dssp CCSEEEESCCC---SHHHHHHHHH----HHH---TTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred CcCEEecCCCC---CHHHHHHHHH----HHh---cCCEEEEEEccChHHHHHHHHhhhcC
Confidence 99999999999 7666443333 322 48899999999998877999888744
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.3e-20 Score=194.24 Aligned_cols=151 Identities=14% Similarity=0.148 Sum_probs=102.7
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC-CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDI 224 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv 224 (377)
..+++|+||+ ++|++++|+||||||||||+|+|+|+..+ ..|. .+.. .+..+++++| +| ..++
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa-----~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA-----QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----SEEEECCCCE---EEEEEC-
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----hcccceeHHH---HHhhCCH
Confidence 4699999999 99999999999999999999999997532 2231 1111 1234666665 34 3455
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHH
Q 017091 225 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304 (377)
Q Consensus 225 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~ 304 (377)
.||+..+. ..+|+++++ ++.+...+.+|+++|||||++|+|+..
T Consensus 660 ~d~l~~~~-----------------------------------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d 703 (800)
T 1wb9_A 660 ADDLASGR-----------------------------------STFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYD 703 (800)
T ss_dssp ---------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSH
T ss_pred HHHHHhhh-----------------------------------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhH
Confidence 55543210 235666654 444555689999999999999999876
Q ss_pred HHHH-HHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEE
Q 017091 305 EHYV-KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 350 (377)
Q Consensus 305 ~~~i-~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~ 350 (377)
...+ ...++.+.+. .|.++|++||+++....||++..+++|++.
T Consensus 704 ~~~i~~~ll~~l~~~--~g~~vl~~TH~~el~~l~d~~~~v~n~~~~ 748 (800)
T 1wb9_A 704 GLSLAWACAENLANK--IKALTLFATHYFELTQLPEKMEGVANVHLD 748 (800)
T ss_dssp HHHHHHHHHHHHHHT--TCCEEEEECSCGGGGGHHHHSTTEEEEEEE
T ss_pred HHHHHHHHHHHHHhc--cCCeEEEEeCCHHHHHHhhhhhceEEEEEE
Confidence 6664 6777777542 378999999999877667776555555554
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-20 Score=186.10 Aligned_cols=164 Identities=20% Similarity=0.148 Sum_probs=99.8
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ +.+++++||+| +|+||||||||||+++|+|...|..| .+|.++... ....+..+
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~i 77 (418)
T 2qag_C 11 YVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQS 77 (418)
T ss_dssp ----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred cEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeeeE
Confidence 5899999999975 36999999998 99999999999999999999886665 233322211 11123568
Q ss_pred EEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 289 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~ 289 (377)
++++|++.++ ..|+.||+.++... .....+.. +.++++. .++.+++||++||||++.+|+
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~--~~~~~~~~-----i~~~i~~------------~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAV--DNSNCWQP-----VIDYIDS------------KFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp ECC------CEEEEEEECC-------------CHH-----HHHHHHH------------HHHHHTTTSCC-CCCCCCCC-
T ss_pred EEEEecCCcccceeeeechhhhhhc--cchhhHHH-----HHHHHHH------------HHHHHHHHHHHHHHHhccCCC
Confidence 9999988776 78999998876321 11111111 1122221 256777899999999999999
Q ss_pred ---EEEEeCcC-CCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh
Q 017091 290 ---ILLLDEAT-SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 334 (377)
Q Consensus 290 ---illlDEPt-s~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~ 334 (377)
+|++|||| ++||+... +.++.+. .+.++|+|.|..+.
T Consensus 139 ~~vlL~ldePt~~~L~~~d~----~~lk~L~----~~v~iIlVinK~Dl 179 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDI----EFMKRLH----EKVNIIPLIAKADT 179 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHH----HHHHHHT----TTSEEEEEEESTTS
T ss_pred eeEEEEEecCcccCCCHHHH----HHHHHHh----ccCcEEEEEEcccC
Confidence 99999999 69998763 3445553 25678888776554
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-19 Score=164.99 Aligned_cols=144 Identities=11% Similarity=0.095 Sum_probs=100.6
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC--CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc-ccH----HH
Q 017091 154 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDI----KS 226 (377)
Q Consensus 154 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~tv----~e 226 (377)
--..++|++++|+||||||||||+++|+|+++| .+|.|.+.+.+... ..+..++|+||++.+|. .++ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 346899999999999999999999999999986 78999998876532 12467999999988773 455 45
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHH
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~ 306 (377)
|+.+...... .| +++ ++.++..++++||| ||+.+..
T Consensus 86 ~~~~~~~~yg---------------------------------~~---~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 86 HAEVFGNYYG---------------------------------TS---REA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp EEEETTEEEE---------------------------------EE---HHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred HHHHHhccCC---------------------------------CC---HHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 5443210000 01 111 23334457999999 9999998
Q ss_pred HHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhh
Q 017091 307 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 307 ~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
.+.+.+. .+.||+++||+++.+.. |+ +.+| .++++++..
T Consensus 122 ~i~~~l~-------~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 122 QIRQKMP-------HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHCT-------TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHcc-------CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 8887654 37899999999998865 32 5667 567777653
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-18 Score=162.40 Aligned_cols=153 Identities=15% Similarity=0.169 Sum_probs=96.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH-hcCCCC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI-MYGCPK 234 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni-~~~~~~ 234 (377)
.+++|++++|+||||||||||++.+++... .|.+ +.|.+... ...+.|+..+... ..+...+ .++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-- 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-- 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT--
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh--
Confidence 478999999999999999999999998664 5766 34544321 2357787665432 1122222 1221
Q ss_pred CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCC--CCCHHHH---HHHH
Q 017091 235 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS--ALDSESE---HYVK 309 (377)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts--~LD~~~~---~~i~ 309 (377)
...........+...+.+ ........||+||+|++ ++++.+|+++|+||||+ ++|+... ..++
T Consensus 93 ~~~~~~~~~~~~~l~l~~---------~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~ 160 (279)
T 1nlf_A 93 HLSAEERQAVADGLLIQP---------LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI 160 (279)
T ss_dssp TSCHHHHHHHHHHEEECC---------CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred hcChhhhhhccCceEEee---------cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence 122222222222222111 01112357999998865 68889999999999999 9998544 6777
Q ss_pred HHHHHhhccCCCCeEEEEEecCchhH
Q 017091 310 GVLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 310 ~~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
+.|+++.++ .|+|||+++|+....
T Consensus 161 ~~L~~l~~~--~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 161 GRMEAIAAD--TGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHH--HCCEEEEEEEC----
T ss_pred HHHHHHHHH--cCCEEEEEecCCCcc
Confidence 778777543 488999999998654
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-20 Score=169.37 Aligned_cols=158 Identities=19% Similarity=0.287 Sum_probs=109.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCC-------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccH
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYE-------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI 224 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv 224 (377)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ +|+++++..++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999886 78898 588887777777777665 68888888899
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH-HHcCCCCEEEEeCcCCCCCHH
Q 017091 225 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR-AILRDPAILLLDEATSALDSE 303 (377)
Q Consensus 225 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr-al~~~p~illlDEPts~LD~~ 303 (377)
.+|+ +|. +.+++.++++..... ..+..+.|+.+... +++ .|| +++.+|++++|||||+++|..
T Consensus 77 ~~n~-~g~----~~~~i~~~~~~~~~~-~~~~~~~g~~~~~~---------~~~-~~~~~~l~~p~~~ilde~~~~~d~~ 140 (198)
T 1lvg_A 77 SGNL-YGT----SKEAVRAVQAMNRIC-VLDVDLQGVRSIKK---------TDL-CPIYIFVQPPSLDVLEQRLRLRNTE 140 (198)
T ss_dssp TTEE-EEE----EHHHHHHHHHTTCEE-EEECCHHHHHHHTT---------SSC-CCEEEEEECSCHHHHHHHHHHHTCS
T ss_pred cCcc-CCC----CHHHHHHHHHcCCcE-EEECCHHHHHHHHh---------cCC-CcEEEEEeCCCHHHHHHHHHhcCCC
Confidence 8887 652 345555555431100 00000111111110 012 566 788999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeC
Q 017091 304 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346 (377)
Q Consensus 304 ~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~ 346 (377)
+++.+.+.|....++ +.++| +. ..+|+|+++++
T Consensus 141 ~e~~i~~~l~~~~~~-------~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 141 TEESLAKRLAAARTD-------MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CHHHHHHHHHHHHHH-------TTGGG--ST-TTCSEEEECSS
T ss_pred CHHHHHHHHHHHHHH-------HHHhh--cc-CCceEEEECCC
Confidence 999999988877532 24567 33 56999988864
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5e-19 Score=175.08 Aligned_cols=179 Identities=16% Similarity=0.177 Sum_probs=115.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~--~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
.+++++ ++.|++ .+ |+++||++++|++ ++|+||||||||||+++|+|+. ++|.++....+...++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 366777 888964 35 9999999999999 9999999999999999999984 3454443322233355
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCCCCCHHH----HHHHHHHcCHHHHHHhC-------CCCccccc-------C--C
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNED----IEWAAKQAYVHEFILSL-------PCGYETLV-------D--D 267 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~-------~~~~~~~~-------~--~ 267 (377)
.++|++|++.++ ..|+.||+.++.. ..... +...++ ..+.+++... +...++.+ . .
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~--~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ--INKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC---CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred eEEEEeecCccccccchhhhhhhhhc--cccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 799999999887 6899999998743 22211 111111 1223333332 11112221 1 1
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHH-hhccCCCCeEEEEEecC
Q 017091 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA-LRNDCKTKRTVIVIAHR 331 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~-l~~~~~~g~tvi~itH~ 331 (377)
..|+-.+ +.++++|..+++++++|||+..|.+.....+.+.+++ +. ..|.+|+.++.+
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~---~~gi~I~~is~~ 218 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV---SNGVQIYQFPTD 218 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB---TTBCCCCCCC--
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH---HcCCcEEecCCC
Confidence 2466665 8999999999999999999999999888888888876 64 358899998865
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-17 Score=144.63 Aligned_cols=78 Identities=26% Similarity=0.386 Sum_probs=68.1
Q ss_pred CCCChHHHHHHHHHHHHc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEE
Q 017091 268 DLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 343 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~----~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~ 343 (377)
..||||||||++|||+|+ ++|+++||||||++||+.+...+.+.|+++. .+.++|+|||+...+..||+++.
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~----~~~~~ivith~~~~~~~ad~i~~ 138 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS----KESQFIVITLRDVMMANADKIIG 138 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSCHHHHTTCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc----cCCEEEEEEecHHHHHhCCEEEE
Confidence 469999999999999997 4579999999999999999999999999884 34689999999888778999985
Q ss_pred E--eCCEE
Q 017091 344 I--DDGRI 349 (377)
Q Consensus 344 l--~~G~i 349 (377)
+ ++|..
T Consensus 139 v~~~~g~s 146 (173)
T 3kta_B 139 VSMRDGVS 146 (173)
T ss_dssp EEEETTEE
T ss_pred EEecCCEE
Confidence 5 56754
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-18 Score=168.74 Aligned_cols=128 Identities=23% Similarity=0.338 Sum_probs=95.3
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCC-CCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
++|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++. + .++..+++++|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~--------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQRE--------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEE---------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeee---------
Confidence 3566665 7899999999999999999999999999998 899988776653 2 2456788998841
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHH
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~ 306 (377)
++ ++ + ..+ +.+|+++|..+|+++++|||+ |+++.
T Consensus 191 ---~g------------------~~------~---------~~~------~~~l~~~L~~~pd~illdE~~---d~e~~- 224 (372)
T 2ewv_A 191 ---VG------------------ED------T---------KSF------ADALRAALREDPDVIFVGEMR---DLETV- 224 (372)
T ss_dssp ---BT------------------TT------B---------SCS------HHHHHHHTTSCCSEEEESCCC---SHHHH-
T ss_pred ---cC------------------CC------H---------HHH------HHHHHHHhhhCcCEEEECCCC---CHHHH-
Confidence 11 00 0 124 469999999999999999999 77653
Q ss_pred HHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEE
Q 017091 307 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 342 (377)
Q Consensus 307 ~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~ 342 (377)
...++.. ..|.+++.++|+.+....+||++
T Consensus 225 --~~~l~~~----~~g~~vi~t~H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 225 --ETALRAA----ETGHLVFGTLHTNTAIDTIHRIV 254 (372)
T ss_dssp --HHHHHHH----TTTCEEEECCCCCSHHHHHHHHH
T ss_pred --HHHHHHH----hcCCEEEEEECcchHHHHHHHHH
Confidence 3344443 24789999999977444466653
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8.4e-17 Score=144.76 Aligned_cols=153 Identities=16% Similarity=0.095 Sum_probs=97.5
Q ss_pred CceeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 148 PILNHVCL-TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 148 ~vL~~isl-~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
+.|+++.. .+++|++++|+||||||||||++.+++ ++..+.++++..+ ..+.. .+.+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~------------------~~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPE------------------RLVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHH------------------HHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHH------------------HHHH
Confidence 46777765 799999999999999999999999999 3333333433321 01111 1111
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHH--HHHHHHHHHHcCC-CCEEEEeCcCCCCCHH
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ--KQRIAIARAILRD-PAILLLDEATSALDSE 303 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq--~QRv~iAral~~~-p~illlDEPts~LD~~ 303 (377)
..... ....+ ++.+.+. ...+|+++ +|+++.+|+++.+ |+++++||||+.+|+.
T Consensus 65 ~~~~~---~~~~~------------~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~ 121 (220)
T 2cvh_A 65 MAETR---GLNPE------------EALSRFI--------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE 121 (220)
T ss_dssp HHHTT---TCCHH------------HHHHHEE--------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred HHHhc---CCChH------------HHhhcEE--------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence 11100 01111 1111111 01245553 6789999999986 9999999999999974
Q ss_pred HH--------HHHHHHHHHhhccCCCCeEEEEEecCch-------------hHHh-cCeEEEEeCC
Q 017091 304 SE--------HYVKGVLHALRNDCKTKRTVIVIAHRLS-------------TIKA-VDRIVVIDDG 347 (377)
Q Consensus 304 ~~--------~~i~~~l~~l~~~~~~g~tvi~itH~l~-------------~~~~-~d~v~~l~~G 347 (377)
.. ..+.+.|+++.++ .+.|+|+++|... .+.. ||+|++|+..
T Consensus 122 ~~~~~~~~~~~~~~~~L~~l~~~--~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 122 ENRSGLIAELSRQLQVLLWIARK--HNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGSSTTHHHHHHHHHHHHHHHHH--HTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CchHHHHHHHHHHHHHHHHHHHH--cCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 32 3344456666443 3789999999865 4554 9999999754
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.8e-19 Score=169.46 Aligned_cols=151 Identities=18% Similarity=0.157 Sum_probs=104.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC--------CCCCCeEEECCEeCCCCC---------------HHHHhcceEEE---c
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY--------EPSDGQIYIDGFPLTDLD---------------IRWLREKIGFV---G 214 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~--------~p~~G~I~i~g~~i~~~~---------------~~~~r~~i~~v---~ 214 (377)
++++|+|+||||||||+|.|+|+. .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999999986542 23456678888 6
Q ss_pred cCCcC-ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCC-CCcccccCC-------CCCChHHHHHHHHHHHHc
Q 017091 215 QEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLP-CGYETLVDD-------DLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 215 Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~-------~~LSgGq~QRv~iAral~ 285 (377)
|++.+ +..++.||..++.+ ..+...... . .+.-...+ .+.-+.++. .+||+||+||+..+++++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p-----~~~~~~~~~-~-~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill 157 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP-----GPIIQTFFS-H-EVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILL 157 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH-----HHHHHHHHH-S-HHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCH-----HHHHHHHhc-C-ccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEE
Confidence 87764 57899998877532 111111100 0 00000000 011111110 148999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 333 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~ 333 (377)
.+|+++ ||| +.+.+.+++++ .+.||+++||+..
T Consensus 158 ~k~dl~--de~---------~~l~~~l~~l~----~~~~ii~~sh~~~ 190 (318)
T 1nij_A 158 TKTDVA--GEA---------EKLHERLARIN----ARAPVYTVTHGDI 190 (318)
T ss_dssp ECTTTC--SCT---------HHHHHHHHHHC----SSSCEEECCSSCC
T ss_pred ECcccC--CHH---------HHHHHHHHHhC----CCCeEEEecccCC
Confidence 999987 998 56778887773 4789999999643
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.1e-19 Score=157.74 Aligned_cols=140 Identities=16% Similarity=0.066 Sum_probs=90.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCC-
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK- 234 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~- 234 (377)
.+++|++++|+||||||||||+++|+|. |+.|.|.++|.++.... ..++.++|++|++. ...++.+|+.+....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998 78999999997653211 11234788888654 456888887542100
Q ss_pred --CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHH
Q 017091 235 --DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 312 (377)
Q Consensus 235 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l 312 (377)
......+........+..+.. . ......+|+|++||+++||++.++|+++ +|+...+.+.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~-~------~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~ 144 (191)
T 1zp6_A 80 AKEGYFVILDGVVRPDWLPAFTA-L------ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQF 144 (191)
T ss_dssp HHTSCEEEECSCCCTTTTHHHHT-T------CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHT
T ss_pred hccCCeEEEeccCcHHHHHHHHh-c------CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHH
Confidence 000000000000001111110 0 0011359999999999999999999876 6887777777766
Q ss_pred HHh
Q 017091 313 HAL 315 (377)
Q Consensus 313 ~~l 315 (377)
..+
T Consensus 145 ~~l 147 (191)
T 1zp6_A 145 ADL 147 (191)
T ss_dssp TCC
T ss_pred hcc
Confidence 655
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.9e-20 Score=177.75 Aligned_cols=175 Identities=13% Similarity=0.115 Sum_probs=118.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC----HHHH
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWL 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~~ 206 (377)
.|+++|+++.|+. ..+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... ....
T Consensus 29 ~ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~ 105 (337)
T 2qm8_A 29 LAESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGD 105 (337)
T ss_dssp HHTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCC
T ss_pred HHeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHH
Confidence 4677788888853 25999999999999999999999999999999999999999999999998875322 1224
Q ss_pred hcceEEEccCCcCcc----------c---cHHHHHh-c---CCC------C--CCCHHHHHHH---------------HH
Q 017091 207 REKIGFVGQEPQLLQ----------M---DIKSNIM-Y---GCP------K--DVKNEDIEWA---------------AK 246 (377)
Q Consensus 207 r~~i~~v~Q~~~l~~----------~---tv~eni~-~---~~~------~--~~~~~~~~~~---------------~~ 246 (377)
+.++++++|++.+|. + ++.|.+. + +.. . ......+.+. .+
T Consensus 106 ~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~ 185 (337)
T 2qm8_A 106 KTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQ 185 (337)
T ss_dssp GGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-----
T ss_pred hhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHH
Confidence 667999999998773 1 1222220 0 000 0 0000000000 00
Q ss_pred --HcCHHHHHHhCCCC--cc-ccc-CCCCCChHHHHHHHHHHHHcC------CCCEEEEeCcCCCCCHHHHHHHHHHHHH
Q 017091 247 --QAYVHEFILSLPCG--YE-TLV-DDDLLSGGQKQRIAIARAILR------DPAILLLDEATSALDSESEHYVKGVLHA 314 (377)
Q Consensus 247 --~~~l~~~~~~~~~~--~~-~~~-~~~~LSgGq~QRv~iAral~~------~p~illlDEPts~LD~~~~~~i~~~l~~ 314 (377)
..++.+ .+.- ++ ... ....+|+|++|++..|++++. +|+++. ||++|......+.+.|.+
T Consensus 186 ~i~~~i~~----~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 186 GIKKGIFE----LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp -CCTTHHH----HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHhc----cccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence 001111 1110 00 010 112478999999999999998 688886 999999999999999987
Q ss_pred hh
Q 017091 315 LR 316 (377)
Q Consensus 315 l~ 316 (377)
+.
T Consensus 258 ~~ 259 (337)
T 2qm8_A 258 HR 259 (337)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-16 Score=145.24 Aligned_cols=147 Identities=18% Similarity=0.276 Sum_probs=88.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhh--CCCC-----CCCeEEECCEeCCCC-CHHHHhcceEEEccCCcCccccHHHH
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLR--LYEP-----SDGQIYIDGFPLTDL-DIRWLREKIGFVGQEPQLLQMDIKSN 227 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~g--l~~p-----~~G~I~i~g~~i~~~-~~~~~r~~i~~v~Q~~~l~~~tv~en 227 (377)
-+++|++++|+||||||||||++.|++ ..+| ..|.+++++.+.... ....+.+.+++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5665 577888887652110 112233445554442 3444
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHH-HHHHHHHHc--CCCCEEEEeCcCCCCCHH-
Q 017091 228 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ-RIAIARAIL--RDPAILLLDEATSALDSE- 303 (377)
Q Consensus 228 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~Q-Rv~iAral~--~~p~illlDEPts~LD~~- 303 (377)
+.+... .+..+.. .+.-++.++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARA------------------------------------FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEEC------------------------------------CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEec------------------------------------CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 433211 1111111 111112222 689999999999999985
Q ss_pred ------H-----HHHHHHHHHHhhccCCCCeEEEEEecCchhH-------------------H-hcCeEEEEeCC
Q 017091 304 ------S-----EHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-------------------K-AVDRIVVIDDG 347 (377)
Q Consensus 304 ------~-----~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~-------------------~-~~d~v~~l~~G 347 (377)
. ...+...|.++.++ .|.|||+++|..... . .||.+++|+.|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~--~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADE--FGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHH--HCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHH--cCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 23344445554432 488999999965432 2 48999999865
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-20 Score=164.64 Aligned_cols=172 Identities=17% Similarity=0.064 Sum_probs=107.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCCCCH
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKN 238 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~ 238 (377)
|++++|+||||||||||+++|++ |.+|.+.++|.++... ..+++++|....+ ..++++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 68999999999999999999997 6789999998665321 2467788766433 457777775310
Q ss_pred HHHHHHHHHcCHHHHHHhCCCCcccccCCCCC--ChHHHHHHHHHH------HHcCCCCEEEEeCcCCCCCHHHHHHHHH
Q 017091 239 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLL--SGGQKQRIAIAR------AILRDPAILLLDEATSALDSESEHYVKG 310 (377)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L--SgGq~QRv~iAr------al~~~p~illlDEPts~LD~~~~~~i~~ 310 (377)
..... .+....++.. .+.........+ |+|++|++.++. +++.+|+...+|+ ++|+..... .+
T Consensus 67 ---~~~~~-~~~~~ild~~-~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~ 137 (189)
T 2bdt_A 67 ---VNFLL-AQNDVVLDYI-AFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VE 137 (189)
T ss_dssp ---HHHHH-TTCEEEEESC-CCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HH
T ss_pred ---HHHHh-cCCcEEEeec-cCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HH
Confidence 00000 0000000000 000000000123 888888888888 8888888888884 899988777 77
Q ss_pred HHHHhhccCCCCeEEEEEecC-chhHHh-cCeEEEEeCCEEEEEcChHHHhh
Q 017091 311 VLHALRNDCKTKRTVIVIAHR-LSTIKA-VDRIVVIDDGRIIEVGNHAELLH 360 (377)
Q Consensus 311 ~l~~l~~~~~~g~tvi~itH~-l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 360 (377)
.+..+.. .+.++|.+||. ++.+.. ||+|+ ++|+++..|+++-+-.
T Consensus 138 ~~~~~~~---~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~~ 184 (189)
T 2bdt_A 138 EFESKGI---DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLEH 184 (189)
T ss_dssp HHHHTTC---CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC--------
T ss_pred HHhhcCC---CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchhh
Confidence 7777642 36799999999 999876 99998 9999999998876643
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-18 Score=159.30 Aligned_cols=139 Identities=17% Similarity=0.133 Sum_probs=95.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHh---hCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCC--
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGC-- 232 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~---gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~-- 232 (377)
++++++|+||||||||||+++|+ |+..|++|+|.++|.+.. ......+++++|++.++ ..++.+|+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999998876532 12334566677877665 568888885310
Q ss_pred ---------CCCCCHHHHHHHHH--HcC------------HHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH-cCCC
Q 017091 233 ---------PKDVKNEDIEWAAK--QAY------------VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI-LRDP 288 (377)
Q Consensus 233 ---------~~~~~~~~~~~~~~--~~~------------l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral-~~~p 288 (377)
.......+...... ..+ +.....+. ...||| |+ ||+ +.+|
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~---------~~~lSg----rv---~al~~~~P 165 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRW---------IHPPSG----RV---YNLDFNPP 165 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE---------EETTTT----EE---EETTTSCC
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC---------CcCCCC----Cc---cccccCCC
Confidence 00011111111110 011 11111111 146898 66 788 9999
Q ss_pred CEEEEe----CcCCCCCHHHHHHHHHHHHHhhc
Q 017091 289 AILLLD----EATSALDSESEHYVKGVLHALRN 317 (377)
Q Consensus 289 ~illlD----EPts~LD~~~~~~i~~~l~~l~~ 317 (377)
++++|| |||++||+.+.+.+.+.+.++.+
T Consensus 166 ~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 166 HVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp SSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 999999 99999999999999999988754
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-18 Score=164.23 Aligned_cols=130 Identities=13% Similarity=0.105 Sum_probs=88.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCC--
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-- 235 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~-- 235 (377)
.++.+++|+|+||||||||++.|.+++.+. | . . ++.+.+|+||.++++.++++|+.++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 356899999999999999999999999763 2 0 1 34466779999999889999987642100
Q ss_pred CCHHHHHHHHHHcCHHHHHHhCCCCcccc------cC--CCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHH
Q 017091 236 VKNEDIEWAAKQAYVHEFILSLPCGYETL------VD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303 (377)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~--~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~ 303 (377)
........+.+...+.+++..++.|++|. +. +..+||||+||+++|++...+|+|||+||||+++|+.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 00000001111223556677777776542 22 3579999999999983333399999999999999985
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-17 Score=165.78 Aligned_cols=156 Identities=16% Similarity=0.171 Sum_probs=103.9
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC----HHH--HhcceEEEccCCcCc-cc
Q 017091 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRW--LREKIGFVGQEPQLL-QM 222 (377)
Q Consensus 150 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~----~~~--~r~~i~~v~Q~~~l~-~~ 222 (377)
-+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.+..... ... .|++|+|++|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 46899999999999999999999999999999999999999999887764321 111 366799999998766 67
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc-CCC-CEEEEeCcCCCC
Q 017091 223 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL-RDP-AILLLDEATSAL 300 (377)
Q Consensus 223 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~-~~p-~illlDEPts~L 300 (377)
++++|+.++...... .. +++.. |.... ...|-.--+|++.++|++. ..| .+||..+||+|.
T Consensus 363 tV~e~l~~a~~~~~D---------vV----LIDTa--Grl~~--~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq 425 (503)
T 2yhs_A 363 VIFDAIQAAKARNID---------VL----IADTA--GRLQN--KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 425 (503)
T ss_dssp HHHHHHHHHHHTTCS---------EE----EECCC--CSCCC--HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH
T ss_pred HHHHHHHHHHhcCCC---------EE----EEeCC--Cccch--hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH
Confidence 999999764211100 00 00000 00000 0011122358889999775 446 466666689887
Q ss_pred CHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 017091 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAH 330 (377)
Q Consensus 301 D~~~~~~i~~~l~~l~~~~~~g~tvi~itH 330 (377)
|... .++.+++. .+.|.|++||
T Consensus 426 ~al~------~ak~f~~~--~~itgvIlTK 447 (503)
T 2yhs_A 426 NAVS------QAKLFHEA--VGLTGITLTK 447 (503)
T ss_dssp HHHH------HHHHHHHH--TCCSEEEEEC
T ss_pred HHHH------HHHHHHhh--cCCCEEEEEc
Confidence 6543 23333321 3789999999
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-17 Score=143.10 Aligned_cols=89 Identities=15% Similarity=0.095 Sum_probs=72.7
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 212 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 212 (377)
+.+|+++.|++ ..+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++... ...+ .+
T Consensus 9 ~~~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~ 79 (158)
T 1htw_A 9 PDEFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GK 79 (158)
T ss_dssp CSHHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TE
T ss_pred CCHHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cc
Confidence 34456677753 36999999999999999999999999999999999999 9999999999877421 1111 28
Q ss_pred EccCCcCccccHHHHHhc
Q 017091 213 VGQEPQLLQMDIKSNIMY 230 (377)
Q Consensus 213 v~Q~~~l~~~tv~eni~~ 230 (377)
++|++.+|..|+.||+.+
T Consensus 80 ~~q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 80 MIYHFDLYRLADPEELEF 97 (158)
T ss_dssp EEEEEECTTCSCTTHHHH
T ss_pred ceeccccccCCcHHHHHH
Confidence 999988888899999853
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-15 Score=149.90 Aligned_cols=149 Identities=13% Similarity=0.199 Sum_probs=95.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHH--HhhCCCCCCC-----eEEECCEeCCC-CCHHHHhcceEEEccCCcCccccHHHH
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNL--LLRLYEPSDG-----QIYIDGFPLTD-LDIRWLREKIGFVGQEPQLLQMDIKSN 227 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~--l~gl~~p~~G-----~I~i~g~~i~~-~~~~~~r~~i~~v~Q~~~l~~~tv~en 227 (377)
-|++|++++|+||||||||||++. +.++.+|+.| .+++++.+... .....+.+++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 589999999999999999999994 4577776544 78888875311 112223445665544 56667
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH--cCCCCEEEEeCcCCCCCHHHH
Q 017091 228 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LRDPAILLLDEATSALDSESE 305 (377)
Q Consensus 228 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral--~~~p~illlDEPts~LD~~~~ 305 (377)
+.+... ...+.. .+.+.-++.+ -.+|+++++|||++.+|+...
T Consensus 247 i~~~~~--~~~~~~---------------------------------~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 247 VAYARA--YNADHQ---------------------------------LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp EEEEEC--CSHHHH---------------------------------HHHHHHHHHHHHHSCEEEEEEETGGGGCC----
T ss_pred EEEecc--CChHHH---------------------------------HHHHHHHHHHHHhcCCceEEecchhhhCchhhc
Confidence 665421 111111 1111111111 257999999999999997543
Q ss_pred ------------HHHHHHHHHhhccCCCCeEEEEEecCc-------------------hhHHh-cCeEEEEeCCE
Q 017091 306 ------------HYVKGVLHALRNDCKTKRTVIVIAHRL-------------------STIKA-VDRIVVIDDGR 348 (377)
Q Consensus 306 ------------~~i~~~l~~l~~~~~~g~tvi~itH~l-------------------~~~~~-~d~v~~l~~G~ 348 (377)
..+++.|+++.++ .|.|||+|+|.. ..+.. +|.+++|++++
T Consensus 292 g~g~l~~Rq~~l~~il~~L~~lake--~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 292 GRGELSARQMHLAKFMRALQRLADQ--FGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHH--HCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred CccchHHHHHHHHHHHHHHHHHHHH--cCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 4566777777653 489999999982 22454 89999998763
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-15 Score=145.44 Aligned_cols=166 Identities=14% Similarity=0.073 Sum_probs=109.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH----HHhc--ceEEEccCCcCc-cccHHHHH
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR----WLRE--KIGFVGQEPQLL-QMDIKSNI 228 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~----~~r~--~i~~v~Q~~~l~-~~tv~eni 228 (377)
..++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+...... .+++ .+.+++|...++ ..+++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999998765532 2233 466999998877 57899998
Q ss_pred hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHH
Q 017091 229 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 308 (377)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i 308 (377)
.++..... +.. +++.. |.. ..-..=..+.-.++|++..++++++||.+|. .| +
T Consensus 205 ~~~~~~~~---------d~v----liDta--G~~-----~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~------~ 257 (328)
T 3e70_C 205 QHAKARGI---------DVV----LIDTA--GRS-----ETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NA------I 257 (328)
T ss_dssp HHHHHHTC---------SEE----EEEEC--CSC-----CTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-TH------H
T ss_pred HHHHhccc---------hhh----HHhhc--cch-----hHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HH------H
Confidence 75310000 000 01111 100 0011122334458999999999999996654 33 3
Q ss_pred HHHHHHhhccCCCCeEEEEEecCchh---------HHh-cCeEEEEeCCEEE
Q 017091 309 KGVLHALRNDCKTKRTVIVIAHRLST---------IKA-VDRIVVIDDGRII 350 (377)
Q Consensus 309 ~~~l~~l~~~~~~g~tvi~itH~l~~---------~~~-~d~v~~l~~G~i~ 350 (377)
.+.++.+.+. .+.|+|++||.-+. +.. .-.|.++..|+.+
T Consensus 258 ~~~~~~~~~~--~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 258 VEQARQFNEA--VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHHHHHH--SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHHHHHh--cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 3444544432 37899999994322 222 4578888888765
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-16 Score=153.77 Aligned_cols=122 Identities=17% Similarity=0.120 Sum_probs=77.0
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-CCCCeEEEC-CEeCCCCCHHHHhcceEEEccCCcCc-cccH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYID-GFPLTDLDIRWLREKIGFVGQEPQLL-QMDI 224 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-p~~G~I~i~-g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv 224 (377)
..++++++. .+|++++|+||||||||||+|+|+|+.+ |++|+|.++ |.+.. ...+..+++++|++.++ ..++
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 357888875 4899999999999999999999999999 999999987 76542 12356799999999877 4688
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 225 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 225 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
+++... ....+++.. .+.++++.+...........+|| ||+||++||+++
T Consensus 279 ~e~~l~----~l~~~e~~~-----~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 279 REFGLW----HLEPEQITQ-----GFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp HTCCCC----CCCHHHHHH-----TSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred HHhhhc----CCCHHHHHH-----HHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 885221 223333221 12233333322111111225799 999999999875
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-18 Score=171.08 Aligned_cols=129 Identities=16% Similarity=0.171 Sum_probs=88.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC-C---HHHHhcceEEEc---------c
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-D---IRWLREKIGFVG---------Q 215 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~-~---~~~~r~~i~~v~---------Q 215 (377)
+|+++ + .++|++++|+||||||||||+++|+|+++|++|+|.+.|.++... + ...++.++++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 378999999999999999999999999999999999999876421 1 112344566655 9
Q ss_pred CCcCc--c-----ccHHHHHhcCCC--------CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 216 EPQLL--Q-----MDIKSNIMYGCP--------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 216 ~~~l~--~-----~tv~eni~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
+|.++ . .|+.+++.++.. ...........+...++..+. ....|||||+|| |
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-----------~~~~LSgg~~QR--L 302 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-----------ISSSLLGVLAQR--L 302 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-----------HHHHEEEEEEEE--E
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-----------HHHHHHHHHHHH--h
Confidence 88753 2 488898865311 011112222223333332221 114699999999 9
Q ss_pred HHHHcCCCCEEE
Q 017091 281 ARAILRDPAILL 292 (377)
Q Consensus 281 Aral~~~p~ill 292 (377)
||+++.+|++..
T Consensus 303 araL~~~p~~~~ 314 (418)
T 1p9r_A 303 VRTLCPDCKEPY 314 (418)
T ss_dssp EEEECTTTCEEE
T ss_pred hhhhcCCCCccC
Confidence 999999999875
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=141.54 Aligned_cols=74 Identities=27% Similarity=0.450 Sum_probs=65.6
Q ss_pred CCCChHHHHHH------HHHHHHcCC-CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCe
Q 017091 268 DLLSGGQKQRI------AIARAILRD-PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDR 340 (377)
Q Consensus 268 ~~LSgGq~QRv------~iAral~~~-p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~ 340 (377)
..|||||+||+ ++||+++.+ |++|||||||++||+.....+.+.|.++. .+.+||+|||+++....||+
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~----~~~~vi~~th~~~~~~~~d~ 354 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK----SIPQMIIITHHRELEDVADV 354 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC----SCSEEEEEESCGGGGGGCSE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc----cCCeEEEEEChHHHHhhCCE
Confidence 46999999988 567999999 99999999999999999999999998873 24689999999885556999
Q ss_pred EEEEe
Q 017091 341 IVVID 345 (377)
Q Consensus 341 v~~l~ 345 (377)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.8e-15 Score=142.60 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=77.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhh-CCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCCCCHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNE 239 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g-l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~ 239 (377)
.+.|+||||+||||+++++++ ++.|+.|.+.++|.++.... ..+..+++++|.+.+. ..+- .+ .....
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~ 107 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPSD-----MG---NNDRI 107 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC------------CCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHhh-----cC---CcchH
Confidence 389999999999999999999 89999999999998765322 2256799999987542 1110 00 01111
Q ss_pred HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccC
Q 017091 240 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 319 (377)
Q Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 319 (377)
.+.+..+ ++....+ +.... .||| +..+|+++|+|||++ ||+.+...+.+.+.+..
T Consensus 108 ~~~~~i~-----~~~~~~~--~~~~~---~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--- 162 (354)
T 1sxj_E 108 VIQELLK-----EVAQMEQ--VDFQD---SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--- 162 (354)
T ss_dssp HHHHHHH-----HHTTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST---
T ss_pred HHHHHHH-----HHHHhcc--ccccc---cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc---
Confidence 1222211 1111111 11000 3566 778999999999999 99999999999988763
Q ss_pred CCCeEEEEEecCchhH
Q 017091 320 KTKRTVIVIAHRLSTI 335 (377)
Q Consensus 320 ~~g~tvi~itH~l~~~ 335 (377)
.+.++|++||+++.+
T Consensus 163 -~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSPI 177 (354)
T ss_dssp -TTEEEEEEESCSCSS
T ss_pred -CCCEEEEEeCCHHHH
Confidence 468999999998754
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-15 Score=133.02 Aligned_cols=112 Identities=17% Similarity=0.167 Sum_probs=75.3
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCC
Q 017091 154 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP 233 (377)
Q Consensus 154 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~ 233 (377)
+|++++|+.++|+||||||||||++++++.+.|.+|.. +.| .+..+.+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~---------~~~~~~~~---- 80 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYF---------FDTKDLIF---- 80 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCE---------EEHHHHHH----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEE---------EEHHHHHH----
Confidence 45678899999999999999999999999987766621 111 11212110
Q ss_pred CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCC-CCCHHHHHHHHHHH
Q 017091 234 KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVKGVL 312 (377)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts-~LD~~~~~~i~~~l 312 (377)
.+... .... ... -+...+.+|++|+||||++ ++|+.....+.+++
T Consensus 81 ------~~~~~---------~~~~-----------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll 126 (180)
T 3ec2_A 81 ------RLKHL---------MDEG-----------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYII 126 (180)
T ss_dssp ------HHHHH---------HHHT-----------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred ------HHHHH---------hcCc-----------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 00000 0000 011 0112234899999999995 99999999999998
Q ss_pred HHhhccCCCCeEEEEEecCch
Q 017091 313 HALRNDCKTKRTVIVIAHRLS 333 (377)
Q Consensus 313 ~~l~~~~~~g~tvi~itH~l~ 333 (377)
....+ .|+++|++||...
T Consensus 127 ~~~~~---~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 127 TYRYN---NLKSTIITTNYSL 144 (180)
T ss_dssp HHHHH---TTCEEEEECCCCS
T ss_pred HHHHH---cCCCEEEEcCCCh
Confidence 87753 4789999999764
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.4e-16 Score=147.71 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=80.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE---CCEeCCCCCHHHHh-cceEEEccCCcC------ccccH
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLR-EKIGFVGQEPQL------LQMDI 224 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i---~g~~i~~~~~~~~r-~~i~~v~Q~~~l------~~~tv 224 (377)
+++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|++++.... ..+ +.+||++|+|.+ ...|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH
Confidence 345679999999999999999999999 99999999999 9988765432 222 369999999854 24688
Q ss_pred HHHH--hcC--------C----CCCCCHHHHHHHHHHcCHHH-HHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 225 KSNI--MYG--------C----PKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 225 ~eni--~~~--------~----~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
||+ .|+ . ........+.++++..++.+ ..+.++ ..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~---------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL---------KIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH---------HHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH---------HHHHHHHHHHHHHhc
Confidence 887 443 0 11122345677777777754 455544 458998899999987
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-14 Score=123.20 Aligned_cols=92 Identities=18% Similarity=0.324 Sum_probs=69.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC--eEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHH
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 226 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G--~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 226 (377)
+|+++ +|+.++|+||||||||||++++++.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 56666 8999999999999999999999999876 46 444443222110
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHH
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 306 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~ 306 (377)
+++.+|++|++|||++ +|+..++
T Consensus 79 --------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 79 --------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp --------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred --------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 2356899999999998 6666688
Q ss_pred HHHHHHHHhhccCCCCeE-EEEEecC
Q 017091 307 YVKGVLHALRNDCKTKRT-VIVIAHR 331 (377)
Q Consensus 307 ~i~~~l~~l~~~~~~g~t-vi~itH~ 331 (377)
.+.+.+..+.+ .|++ +|++||.
T Consensus 102 ~l~~li~~~~~---~g~~~iiits~~ 124 (149)
T 2kjq_A 102 LLFSIFNRFRN---SGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHH---HTCCEEEEEESS
T ss_pred HHHHHHHHHHH---cCCcEEEEECCC
Confidence 89899888764 3677 8888884
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.49 E-value=5.3e-17 Score=165.02 Aligned_cols=174 Identities=16% Similarity=0.189 Sum_probs=111.8
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKS 226 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~e 226 (377)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+--..+ -...++++.|..... ..|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~---~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY---HENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC---CSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC---CCCeEEEEeecccccCCcCHHH
Confidence 4789999999999999999999999999999999999999999999886522221 134577777665422 246666
Q ss_pred HHhcCCC--------CCCCHHHHHHHHHHc-------------CHHHHHHhC---CCCcccc----cC-----CCCCChH
Q 017091 227 NIMYGCP--------KDVKNEDIEWAAKQA-------------YVHEFILSL---PCGYETL----VD-----DDLLSGG 273 (377)
Q Consensus 227 ni~~~~~--------~~~~~~~~~~~~~~~-------------~l~~~~~~~---~~~~~~~----~~-----~~~LSgG 273 (377)
++..... ......+...+.+.. ...+.+.++ +.+.... +. ...+|+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 6543211 012222232222211 122333322 2222111 11 1247999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEE--EecCchhHHh-cC
Q 017091 274 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV--IAHRLSTIKA-VD 339 (377)
Q Consensus 274 q~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~--itH~l~~~~~-~d 339 (377)
|+||.++|. + | |+|||+.....+.+.+.++. ..++|+++ +||+++.+.. |+
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~---~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWD---PKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEE---TTTTEEEECSCCTHHHHHHHHHT
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEc---ccCCEEEEcccHHHHHHHHHHcC
Confidence 999987752 1 7 99999987766666666553 24778875 8999998864 64
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-16 Score=143.45 Aligned_cols=139 Identities=19% Similarity=0.156 Sum_probs=85.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhc----CC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY----GC 232 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~----~~ 232 (377)
.++|++++|+||||||||||+++|+|+++|+ | ..+++|+++...+..+..+|+.. +.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999875 4 13566666665554444444321 10
Q ss_pred CCCCCHHHHHHHHHHcCHHHHHHhCCCC--cccccC--CCCCChHHHHHHHHH-HHHcCCCCEEEEeCcCCCCCHHHHHH
Q 017091 233 PKDVKNEDIEWAAKQAYVHEFILSLPCG--YETLVD--DDLLSGGQKQRIAIA-RAILRDPAILLLDEATSALDSESEHY 307 (377)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~--~~~LSgGq~QRv~iA-ral~~~p~illlDEPts~LD~~~~~~ 307 (377)
+....... +.+++..++.+ ...... ...+|+||+||+++| ++++.++.++++|||.-
T Consensus 80 ~~~~~~~~---------~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~--------- 141 (208)
T 3c8u_A 80 PETFDFEG---------FQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW--------- 141 (208)
T ss_dssp GGGBCHHH---------HHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG---------
T ss_pred CchhhHHH---------HHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh---------
Confidence 00011111 11222222222 222222 245899999999998 88888888888888731
Q ss_pred HHHHHHHhhccCCCCeEEEEEecCchh-HHh-cCe
Q 017091 308 VKGVLHALRNDCKTKRTVIVIAHRLST-IKA-VDR 340 (377)
Q Consensus 308 i~~~l~~l~~~~~~g~tvi~itH~l~~-~~~-~d~ 340 (377)
..+... --.+++++++.+. +.+ +.|
T Consensus 142 -----~~l~~~---~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 142 -----RDLTAI---WDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp -----GGGGGT---CSEEEEECCCHHHHHHHHHHH
T ss_pred -----HHHHHh---cCEEEEEeCCHHHHHHHHHHH
Confidence 111111 1267888888876 333 555
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-17 Score=153.14 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=100.6
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCC-cCc-cccHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP-QLL-QMDIK 225 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~l~-~~tv~ 225 (377)
.+++++++++++| ++|+||||||||||+|+|+|...+ |.|.++|.++......+.++.++++||.+ ..+ ..++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4899999999999 999999999999999999999876 79999998886554445566799999985 333 45777
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCC-------
Q 017091 226 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS------- 298 (377)
Q Consensus 226 eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts------- 298 (377)
||+....... ..... .. .......++ ..|||||+||+.+++|+.++|++| |||+.
T Consensus 110 Deid~~~~~r-~~~~~-~~-----~~~~~~~~l---------~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~ 171 (274)
T 2x8a_A 110 DEVDALCPRR-SDRET-GA-----SVRVVNQLL---------TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK 171 (274)
T ss_dssp ETCTTTCC----------------CTTHHHHHH---------HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred ehhhhhhccc-CCCcc-hH-----HHHHHHHHH---------HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence 8876532211 11000 00 001111111 348999999999999999999985 99974
Q ss_pred -----CCCHHHHHHHHHHH
Q 017091 299 -----ALDSESEHYVKGVL 312 (377)
Q Consensus 299 -----~LD~~~~~~i~~~l 312 (377)
--|...+..+++.+
T Consensus 172 ~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEECCSCCHHHHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHHH
Confidence 23566665555543
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-14 Score=138.71 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=68.5
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE---CCEeCCCCCHHHHhcceEEEccCCc-------------
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQ------------- 218 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~------------- 218 (377)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+++.........+.+|||+|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 9988865432111236999999985
Q ss_pred ---Cc-cccHHHHHhcCCCC--CCCHHHHHHHHHHcCH-HHHHHhCC
Q 017091 219 ---LL-QMDIKSNIMYGCPK--DVKNEDIEWAAKQAYV-HEFILSLP 258 (377)
Q Consensus 219 ---l~-~~tv~eni~~~~~~--~~~~~~~~~~~~~~~l-~~~~~~~~ 258 (377)
+| ..|+ +|+.|+... ......+.++++..++ .+..+.+|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 34 4678 888875321 2234567788888888 46666665
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-14 Score=143.20 Aligned_cols=156 Identities=19% Similarity=0.180 Sum_probs=93.0
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHh
Q 017091 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 229 (377)
Q Consensus 150 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~ 229 (377)
-++++|+++.|+.++|+|+||||||||+++|+|..+ .+.+.+...+ ...+++++++.. ...++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 479999999999999999999999999999999853 3455544332 335788877641 1222333221
Q ss_pred cCC----CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHH
Q 017091 230 YGC----PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305 (377)
Q Consensus 230 ~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~ 305 (377)
+.. ....... .....+. .+.++..+... .....+||+|++|++++|++|+.+|.++++ +.+|+...
T Consensus 215 li~~a~~~~~L~~~-fl~~~er--a~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~ 284 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIAR--TRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE 284 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTS--SSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred cccchhhhhhhhHH-HHHHHHH--HHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence 110 0001111 1111110 00011111000 000135999999999999999999999999 99999766
Q ss_pred HHHHHHHHHhhccCCCCeEEEEEec
Q 017091 306 HYVKGVLHALRNDCKTKRTVIVIAH 330 (377)
Q Consensus 306 ~~i~~~l~~l~~~~~~g~tvi~itH 330 (377)
...+.+.+..+ ..+.+++++|.
T Consensus 285 -~~~~~l~~~l~--~~g~~vi~iSA 306 (416)
T 1udx_A 285 -EAVKALADALA--REGLAVLPVSA 306 (416)
T ss_dssp -HHHHHHHHHHH--TTTSCEEECCT
T ss_pred -HHHHHHHHHHH--hcCCeEEEEEC
Confidence 33344433322 23667776663
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-14 Score=138.90 Aligned_cols=139 Identities=18% Similarity=0.248 Sum_probs=96.6
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEE-------------------eCCcEEEEEcCCCCcHHHHHHHHhhCCC--CCC
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTI-------------------EANEVVAIVGLSGSGKSTFVNLLLRLYE--PSD 188 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i-------------------~~Ge~~~ivG~nGsGKSTLl~~l~gl~~--p~~ 188 (377)
..|+++||++.|. ++++++++.+ ++|+++||+||||||||||+++|+|++. |++
T Consensus 36 ~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 36 EDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp TTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred cccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 3589999999993 5999999988 8999999999999999999999999998 999
Q ss_pred CeEEE---CCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccc
Q 017091 189 GQIYI---DGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 264 (377)
Q Consensus 189 G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 264 (377)
|+|.+ ||.... . ..++.++++ |+..++ ..++.+|+.+... + .. + .+ .-..| .+
T Consensus 111 G~i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~-------l----~~-~-~~-~i~~P-~~--- 167 (308)
T 1sq5_A 111 RRVELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVKFVSD-------L----KS-G-VP-NVTAP-VY--- 167 (308)
T ss_dssp CCEEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHH-------H----TT-T-CS-CEEEC-CE---
T ss_pred CeEEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHHHHHH-------H----hC-C-CC-ceecc-cc---
Confidence 99999 887642 2 335568888 766655 5688887754210 0 00 0 00 00011 01
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCH
Q 017091 265 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302 (377)
Q Consensus 265 ~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~ 302 (377)
..+.+ +|+..+.+.+.+|+++|+|.|....++
T Consensus 168 ----~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 168 ----SHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp ----ETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred ----ccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 11222 333333345678999999999998873
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.6e-15 Score=135.98 Aligned_cols=192 Identities=12% Similarity=0.108 Sum_probs=76.9
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh-hCCCCCCCeEEECCEeCCCCCHHH-HhcceEEEccCCcCc-cccH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRW-LREKIGFVGQEPQLL-QMDI 224 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~-gl~~p~~G~I~i~g~~i~~~~~~~-~r~~i~~v~Q~~~l~-~~tv 224 (377)
+..+++||++++|++++|+||||||||||+++|+ |+++|. .++.++....+.. ....++|.++++..| ..+.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCccccCCCeEEEecHHHhhhhhh
Confidence 4689999999999999999999999999999999 998541 2222221111100 012345666665544 2333
Q ss_pred HHHHhc----CCC-CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh--HHHHHH-HHH-HHHcCCCCEEEEeC
Q 017091 225 KSNIMY----GCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG--GQKQRI-AIA-RAILRDPAILLLDE 295 (377)
Q Consensus 225 ~eni~~----~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSg--Gq~QRv-~iA-ral~~~p~illlDE 295 (377)
.+++.. ... .....+.+.+.++.. ....+. ..+.| .-+++. .-+ ..++..|+..++||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~vild-~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~ 156 (231)
T 3lnc_A 90 NGEIIEHAEVFGNFYGVPRKNLEDNVDKG------------VSTLLV-IDWQGAFKFMEMMREHVVSIFIMPPSMEELRR 156 (231)
T ss_dssp TTCEEEEEEETTEEEEEECTTHHHHHHHT------------CEEEEE-CCHHHHHHHHHHSGGGEEEEEEECSCHHHHHH
T ss_pred cCceehhhhhccccCCCCHHHHHHHHHcC------------CeEEEE-cCHHHHHHHHHhcCCCeEEEEEECCcHHHHHH
Confidence 333321 000 000011122222210 000000 00111 113333 111 23456778888899
Q ss_pred cCCCCCHHHHHHHHHHHHHhhcc--CCCCeEEEEEecCchhHH-hcCeEEEEeCCEEEEEcChHH
Q 017091 296 ATSALDSESEHYVKGVLHALRND--CKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 296 Pts~LD~~~~~~i~~~l~~l~~~--~~~g~tvi~itH~l~~~~-~~d~v~~l~~G~i~~~g~~~~ 357 (377)
++.+.|..+++.+.+.+.....+ ......+|+++|+++.+. .+++++...+++.....+.++
T Consensus 157 Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~~~~~~~~~ 221 (231)
T 3lnc_A 157 RLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKTCRQVGLRE 221 (231)
T ss_dssp C--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBGGGEESHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhccccCcchhh
Confidence 99999988877777666543211 012346777888877654 366665444454444444433
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-12 Score=131.87 Aligned_cols=53 Identities=15% Similarity=0.104 Sum_probs=50.1
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 201 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~ 201 (377)
++|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|+++...
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~ 70 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGS 70 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccC
Confidence 489999999999 99999999999999999999999999999999999887643
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.28 E-value=9e-13 Score=125.49 Aligned_cols=113 Identities=15% Similarity=0.241 Sum_probs=78.0
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcC
Q 017091 152 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 231 (377)
Q Consensus 152 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~ 231 (377)
.++++.++|++++|+|||||||||+++.|++.+.+..|+|.+.+.|... .. ..++
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r--~~-------------------a~eq---- 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR--AA-------------------AIEQ---- 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC--HH-------------------HHHH----
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc--HH-------------------HHHH----
Confidence 3456678899999999999999999999999999998999988776421 10 0111
Q ss_pred CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH---HHHHHHcCCCCEEEEeCcCCCCCHHHHHHH
Q 017091 232 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI---AIARAILRDPAILLLDEATSALDSESEHYV 308 (377)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv---~iAral~~~p~illlDEPts~LD~~~~~~i 308 (377)
+....+..+ ++ . ...+|+|+.|++ ++++|+..+|+++|+|||.. ......+
T Consensus 151 ---------L~~~~~~~g-------l~----~---~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l 204 (306)
T 1vma_A 151 ---------LKIWGERVG-------AT----V---ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNL 204 (306)
T ss_dssp ---------HHHHHHHHT-------CE----E---ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHH
T ss_pred ---------HHHHHHHcC-------Cc----E---EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHH
Confidence 111111111 11 0 024689999999 99999999999999999974 2233344
Q ss_pred HHHHHHh
Q 017091 309 KGVLHAL 315 (377)
Q Consensus 309 ~~~l~~l 315 (377)
++.+..+
T Consensus 205 ~~eL~~l 211 (306)
T 1vma_A 205 MEELRKV 211 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=9.4e-16 Score=147.90 Aligned_cols=172 Identities=14% Similarity=0.170 Sum_probs=107.4
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCC-------cEEEEEcCCCCcHHHHHHHHhhCC----CCCCCeEEECCEeCCC
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEAN-------EVVAIVGLSGSGKSTFVNLLLRLY----EPSDGQIYIDGFPLTD 200 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~G-------e~~~ivG~nGsGKSTLl~~l~gl~----~p~~G~I~i~g~~i~~ 200 (377)
++.++++..|+. ..+++++++.+++| +.++|+||||+|||||+++|+|.+ .|++|.+..++.++..
T Consensus 19 lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 445566666653 25899999999887 899999999999999999999998 7788888776655432
Q ss_pred CCHHHHhcceEEEccCCcCccccHHHHHhcCCC-CCCC----HHHHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHH
Q 017091 201 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQ 274 (377)
Q Consensus 201 ~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~LSgGq 274 (377)
......+..|.|++|...++. ++.|++..... .... ... ..+ .+...+.. .++. .......||+|+
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~---~~~--~i~~~l~~--~~li~at~~~~~Ls~~l 167 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGP---SAK--SIRIDIQP--FTLVGATTRSGLLSSPL 167 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC--------------------CC--CEEEEEESCGGGSCHHH
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCc---ccc--cccccCCC--eEEEEecCCcccCCHHH
Confidence 111111356999999877665 77777642110 0000 000 000 01111111 1111 111124699999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh
Q 017091 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 337 (377)
Q Consensus 275 ~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~ 337 (377)
+||++++ .+||+.+.+.+.+.|++..+. .+ ++|+.+.+..
T Consensus 168 ~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~--~~-----~~~~~~~~~~ 207 (334)
T 1in4_A 168 RSRFGII----------------LELDFYTVKELKEIIKRAASL--MD-----VEIEDAAAEM 207 (334)
T ss_dssp HTTCSEE----------------EECCCCCHHHHHHHHHHHHHH--TT-----CCBCHHHHHH
T ss_pred HHhcCce----------------eeCCCCCHHHHHHHHHHHHHH--cC-----CCcCHHHHHH
Confidence 9998655 788888888899988877543 23 4677766543
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-13 Score=129.69 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=44.3
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE---CCEeCCCCCHHHHhcceEEEccCCcCc-----cccHHH
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQLL-----QMDIKS 226 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~l~-----~~tv~e 226 (377)
+++.+|++++|+||||||||||+|+|+|+.+|.+|+|.+ +|+.++... ...+..+||++|.|.+. ..|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567799999999999999999999999999999999999 888765432 11222389999999654 3578 8
Q ss_pred HHh
Q 017091 227 NIM 229 (377)
Q Consensus 227 ni~ 229 (377)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 883
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.9e-13 Score=118.32 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=55.2
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHh
Q 017091 154 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIM 229 (377)
Q Consensus 154 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~ 229 (377)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|+||++..| ..++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57889999999999999999999999999974 5888887776544333466799999999877 456666654
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=8.7e-12 Score=118.20 Aligned_cols=142 Identities=15% Similarity=0.236 Sum_probs=89.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK 237 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 237 (377)
++|++++++|||||||||+++.|++.+.+++| +++.++.+|++ ..+..+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHHH-------
Confidence 47899999999999999999999999988778 24666666652 2233333321
Q ss_pred HHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhc
Q 017091 238 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 317 (377)
Q Consensus 238 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~ 317 (377)
..+..+ +|. .. ..+ +..-+.++++ +.+|+++|+| |+|+|+.....+.++.+-+..
T Consensus 156 ------~~~~~g-------l~~----~~---~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 156 ------YAELLQ-------APL----EV---CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp ------HHTTTT-------CCC----CB---CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred ------HHHhcC-------CCe----Ee---cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 111100 111 00 112 3344667775 4999999999 999998776555554443321
Q ss_pred cCCCCeEEEEE--ecCchhHHh-cCeEEEEeCCEEEEE
Q 017091 318 DCKTKRTVIVI--AHRLSTIKA-VDRIVVIDDGRIIEV 352 (377)
Q Consensus 318 ~~~~g~tvi~i--tH~l~~~~~-~d~v~~l~~G~i~~~ 352 (377)
. ....+++++ +|+.+.+.. ++++..++.+.++..
T Consensus 211 ~-~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 211 E-SSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp C-TTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred c-CCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 1 122234444 899887765 777666677777654
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=115.94 Aligned_cols=142 Identities=18% Similarity=0.170 Sum_probs=97.6
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
+.++++++.|+.. . ++++|+ +|++++++|+|||||||+++.|++++.+..|+|.+.+.|+.. .....
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~--~~~~~---- 143 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR--PAARE---- 143 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC--HHHHH----
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc--HhHHH----
Confidence 5567778888532 2 788888 999999999999999999999999999999999998877542 11000
Q ss_pred EEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEE
Q 017091 212 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 291 (377)
Q Consensus 212 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~il 291 (377)
| + ....+.. .++ -.......+..+.+|.+|+++...+++++
T Consensus 144 ---q------------l-------------~~~~~~~-------~l~----~~~~~~~~~p~~l~~~~l~~~~~~~~D~v 184 (295)
T 1ls1_A 144 ---Q------------L-------------RLLGEKV-------GVP----VLEVMDGESPESIRRRVEEKARLEARDLI 184 (295)
T ss_dssp ---H------------H-------------HHHHHHH-------TCC----EEECCTTCCHHHHHHHHHHHHHHHTCCEE
T ss_pred ---H------------H-------------HHhcccC-------CeE----EEEcCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 0 0 0000100 111 00000112445667899999988999999
Q ss_pred EEeCc-CCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEe
Q 017091 292 LLDEA-TSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 329 (377)
Q Consensus 292 llDEP-ts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~it 329 (377)
|+||| ++++|......+.+....+. ...+++++.
T Consensus 185 iiDtpp~~~~d~~~~~~l~~~~~~~~----~~~~~lv~~ 219 (295)
T 1ls1_A 185 LVDTAGRLQIDEPLMGELARLKEVLG----PDEVLLVLD 219 (295)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHC----CSEEEEEEE
T ss_pred EEeCCCCccccHHHHHHHHHHhhhcC----CCEEEEEEe
Confidence 99999 99999988777777766652 344555444
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.2e-12 Score=115.10 Aligned_cols=171 Identities=16% Similarity=0.209 Sum_probs=90.6
Q ss_pred Cceeee-eEEEeCCcEEEEEcCCCCcHHHHHH-HHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccH
Q 017091 148 PILNHV-CLTIEANEVVAIVGLSGSGKSTFVN-LLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDI 224 (377)
Q Consensus 148 ~vL~~i-sl~i~~Ge~~~ivG~nGsGKSTLl~-~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv 224 (377)
+.|+.+ .--+++|++++|+||||||||||+. ++.+..++..+.+++++.. ...........+|+.+|+.... +.++
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~~~g~~~~~~~~~~~l~~ 88 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMAQFGWDVKPYEEKGMFAM 88 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHHTTTCCCHHHHHHTSEEE
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHHHcCCCHHHHhhCCcEEE
Confidence 456666 5679999999999999999999955 5555555444455555432 1111112223456655532110 1111
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCcCCCC--
Q 017091 225 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSAL-- 300 (377)
Q Consensus 225 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~--~~p~illlDEPts~L-- 300 (377)
.+. + ..... .. ...+ . .......+ ..+....++.++ .+|+++++|+|++.+
T Consensus 89 ~~~--~--~~~~~-----------~~----~~~~--~--~~~~~~~~--~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~ 143 (247)
T 2dr3_A 89 VDA--F--TAGIG-----------KS----KEYE--K--YIVHDLTD--IREFIEVLRQAIRDINAKRVVVDSVTTLYIN 143 (247)
T ss_dssp EEC--S--TTTTC-----------C------CCC--S--CBCSCCSS--HHHHHHHHHHHHHHHTCCEEEEETSGGGTTT
T ss_pred Eec--c--hhhcc-----------cc----cccc--c--ccccCccC--HHHHHHHHHHHHHHhCCCEEEECCchHhhcC
Confidence 110 0 00000 00 0000 0 00001111 222233333333 479999999999988
Q ss_pred CHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh--------HH-hcCeEEEEeC
Q 017091 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--------IK-AVDRIVVIDD 346 (377)
Q Consensus 301 D~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~--------~~-~~d~v~~l~~ 346 (377)
|+....+....+.++.++ .|.|||+++|.... +. .||.|+.|+.
T Consensus 144 ~~~~~~~~l~~l~~~~~~--~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 144 KPAMARSIILQLKRVLAG--TGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp CGGGHHHHHHHHHHHHHH--TTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHH--CCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 554444454555554433 48899999998764 33 4899999964
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-14 Score=135.98 Aligned_cols=139 Identities=16% Similarity=0.164 Sum_probs=95.8
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
-+++++.+.|.. ..+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++........++.++
T Consensus 50 ~~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 122 (278)
T 1iy2_A 50 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 122 (278)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHH
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHH
Confidence 345667777753 35899999999999 99999999999999999999885 799999987764332233445688
Q ss_pred EEccCCc-Cc-cccHHHHH-hcCCCCCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 212 FVGQEPQ-LL-QMDIKSNI-MYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 212 ~v~Q~~~-l~-~~tv~eni-~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
+++|... .+ ..++.|++ .++..... ..++.... +..++ ..|||||+||+.+++|+
T Consensus 123 ~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~-----~~~ll-------------~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 123 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL-------------VEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHH-----HHHHH-------------HHHTTCCTTCCEEEEEE
T ss_pred HHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH-----HHHHH-------------HHHhCCCCCCCEEEEEe
Confidence 8888764 33 45677777 33311110 01111111 12222 23799999999999999
Q ss_pred cCCCCEEEEeCcC
Q 017091 285 LRDPAILLLDEAT 297 (377)
Q Consensus 285 ~~~p~illlDEPt 297 (377)
.++|++ +|++.
T Consensus 185 t~~p~~--ld~~l 195 (278)
T 1iy2_A 185 TNRPDI--LDPAL 195 (278)
T ss_dssp ESCTTS--SCHHH
T ss_pred cCCchh--CCHhH
Confidence 999987 67764
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.16 E-value=6.8e-13 Score=120.97 Aligned_cols=75 Identities=13% Similarity=0.180 Sum_probs=51.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH-------
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI------- 203 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~------- 203 (377)
.|+++|++..|+ . +|++.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~------~----~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA------R----TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE------E----EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC------C----EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 488888865442 1 566667 8999999999999999999999999999999999998743322
Q ss_pred -HHHhcceEEEccC
Q 017091 204 -RWLREKIGFVGQE 216 (377)
Q Consensus 204 -~~~r~~i~~v~Q~ 216 (377)
...+..++|++|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 1235679999985
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.1e-12 Score=129.30 Aligned_cols=166 Identities=16% Similarity=0.190 Sum_probs=95.1
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhh--CCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc---ccH-
Q 017091 151 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ---MDI- 224 (377)
Q Consensus 151 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g--l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~---~tv- 224 (377)
+.+++++.++..+.|.|++||||||+++.|.. ++.++.|++.+.+.|........+.. -|++.. ...
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~~Vvtd~~ 230 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLTEVVTDMK 230 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSSSCBCSHH
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccceeecCHH
Confidence 35788899999999999999999999999886 67777899988888765432221110 122210 011
Q ss_pred --HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH----------HHHHHHcCCCC-EE
Q 017091 225 --KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI----------AIARAILRDPA-IL 291 (377)
Q Consensus 225 --~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv----------~iAral~~~p~-il 291 (377)
.+.+... ....+++ .+.+...++.++.. |+... ...+|+||+|+. ++|+++...|. ++
T Consensus 231 ~a~~~L~~~--~~EmerR-~~ll~~~Gv~~i~~-----yn~~~-~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 231 DAANALRWC--VNEMERR-YKLMSALGVRNLAG-----YNEKI-AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HHHHHHHHH--HHHHHHH-HHHHHHTTCSSHHH-----HHHHH-HHHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HHHHHHHHH--HHHHHHH-HHHHHHcCCccHHH-----HHHHH-HHHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 1111110 0000000 11111111111000 00000 013678887752 46677788898 89
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhhccCC-CCeEEEEEecCch
Q 017091 292 LLDEATSALDSESEHYVKGVLHALRNDCK-TKRTVIVIAHRLS 333 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~~~~~-~g~tvi~itH~l~ 333 (377)
++||+++-+|.. ...+.+.+.++.+..+ .|.++|++||+++
T Consensus 302 vIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 302 LVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999999998843 3455566665543322 3889999999987
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=99.14 E-value=4.9e-12 Score=126.89 Aligned_cols=180 Identities=13% Similarity=0.151 Sum_probs=110.1
Q ss_pred CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC-eEEECCEeCCCCCHHHHhcce-EEEccCCcCccccH
Q 017091 147 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKI-GFVGQEPQLLQMDI 224 (377)
Q Consensus 147 ~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i-~~v~Q~~~l~~~tv 224 (377)
.+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+ .+...+..++ +.... ..
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~------~~- 259 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGN------IN- 259 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHT------CC-
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcC------CC-
Confidence 3578999888999999999999999999999999987766555 56665533 2333333221 11111 00
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCcCCCCCH
Q 017091 225 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDS 302 (377)
Q Consensus 225 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~--~~p~illlDEPts~LD~ 302 (377)
.+.+..| ....++.....+. .+.+...|.-. .....+|.+|.+ +.+|.+. .+|+++++|+++.-.++
T Consensus 260 ~~~l~~g---~l~~~~~~~~~~a---~~~l~~~~l~i---~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 260 AQNLRTG---KLTPEDWGKLTMA---MGSLSNAGIYI---DDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHHTS---CCCHHHHHHHHHH---HHHHHSSCEEE---ECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHHhcC---CCCHHHHHHHHHH---HHHHhcCCEEE---ECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 1122222 2233332222221 11222222111 112468999876 5667766 68999999999998743
Q ss_pred --------HHHHHHHHHHHHhhccCCCCeEEEEEec---------C--ch--------hHH-hcCeEEEEeCCEE
Q 017091 303 --------ESEHYVKGVLHALRNDCKTKRTVIVIAH---------R--LS--------TIK-AVDRIVVIDDGRI 349 (377)
Q Consensus 303 --------~~~~~i~~~l~~l~~~~~~g~tvi~itH---------~--l~--------~~~-~~d~v~~l~~G~i 349 (377)
.....+.+.|+.+.++ .+.+||+++| + +. .+. .||.|++|+.++.
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke--~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARE--LEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHH--HTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH--hCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 2234556666666543 4889999999 3 32 344 4999999986654
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-14 Score=132.63 Aligned_cols=140 Identities=16% Similarity=0.169 Sum_probs=96.2
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
.+++++.+.|.. ..+++++++++++| ++|+||||||||||+++|++... .|.|.++|.++........++.++
T Consensus 26 ~~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 456677777743 35899999999999 99999999999999999999885 789999987664332233345678
Q ss_pred EEccCCc-Cc-cccHHHHH-hcCCCCCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 212 FVGQEPQ-LL-QMDIKSNI-MYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 212 ~v~Q~~~-l~-~~tv~eni-~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
+++|... .+ ..++.|++ .++..... ..++..+. +..++. .|||||+||+.+++|+
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~-----~~~ll~-------------~l~g~~~~~~~i~~a~ 160 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLLV-------------EMDGFEKDTAIVVMAA 160 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH-----HHHHHH-------------HHHTCCTTCCEEEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH-----HHHHHH-------------HHhCCCCCCCEEEEEc
Confidence 8888753 33 45666776 33311110 01111111 122222 3799999999999999
Q ss_pred cCCCCEEEEeCcCC
Q 017091 285 LRDPAILLLDEATS 298 (377)
Q Consensus 285 ~~~p~illlDEPts 298 (377)
.++|++ +|++.-
T Consensus 161 t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 161 TNRPDI--LDPALL 172 (254)
T ss_dssp ESCGGG--SCGGGG
T ss_pred cCCchh--CCHHHc
Confidence 999987 688764
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=112.02 Aligned_cols=144 Identities=20% Similarity=0.257 Sum_probs=83.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE-CCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK 234 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i-~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~ 234 (377)
-+++|+++.|.||+|||||||+..++.......|.+.+ +... ..+.. +.+++|+.+++.. +.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~~-~a~~lG~~~~~l~-----------i~--- 119 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDPE-YAKKLGVDTDSLL-----------VS--- 119 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHH-HHHHTTCCGGGCE-----------EE---
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCHH-HHHHcCCCHHHeE-----------Ee---
Confidence 58899999999999999999988887654444444433 3221 11111 1111222111110 00
Q ss_pred CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC--CCEEEEeCcCCCC----------CH
Q 017091 235 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD--PAILLLDEATSAL----------DS 302 (377)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~--p~illlDEPts~L----------D~ 302 (377)
...+. .|-+.++++++.+ |+++++|||++.+ |+
T Consensus 120 ---------------------------------~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 120 ---------------------------------QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp ---------------------------------CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred ---------------------------------cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 00122 2334577777755 9999999999998 32
Q ss_pred ---HHHHHHHHHHHHhh---ccCCCCeEEEEEecCch----------------hHHh-cCeEEEEeCCEEEEEc
Q 017091 303 ---ESEHYVKGVLHALR---NDCKTKRTVIVIAHRLS----------------TIKA-VDRIVVIDDGRIIEVG 353 (377)
Q Consensus 303 ---~~~~~i~~~l~~l~---~~~~~g~tvi~itH~l~----------------~~~~-~d~v~~l~~G~i~~~g 353 (377)
...+.+.+.++++. ++ .+.|||+++|-.. .++. ||.++.++.++++..|
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~--~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNN--SGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH--HTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHH--hCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 12223444444442 22 4789999999543 1444 8999999877654433
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.8e-14 Score=140.15 Aligned_cols=170 Identities=14% Similarity=0.131 Sum_probs=105.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhh------------CCCCCCCeEEECCEeCCCCCH-HHHhcce---EEEccCCcC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLR------------LYEPSDGQIYIDGFPLTDLDI-RWLREKI---GFVGQEPQL 219 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~g------------l~~p~~G~I~i~g~~i~~~~~-~~~r~~i---~~v~Q~~~l 219 (377)
.+++|..++|+|+||||||||+++|+| ...|++|.|.++|..+..+.. ..-++.+ .++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 467899999999999999999999999 667999999998854321100 0001122 355566655
Q ss_pred cc-ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCc
Q 017091 220 LQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP--AILLLDEA 296 (377)
Q Consensus 220 ~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p--~illlDEP 296 (377)
.. .+..+++ .. .....++.+. ..+.-+...-+. ....+||+. +| +++++|||
T Consensus 96 ~~~~s~~e~L--------~~-~fl~~ir~~d--~il~Vvd~~~d~--~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGL--------GN-AFLSHVRAVD--AIYQVVRAFDDA--EIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSS--------CH-HHHHHHTTCS--EEEEEEECCCTT--CSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHH--------HH-HHHHHHHHHH--HHHHHHhccccc--eeeeecccc------------Ccchhhhhchhh
Confidence 42 2222211 01 1111111100 000000000000 011255542 89 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHh-hccCCCCeEEEEEecCchhHHh-cCeEE-EEeCC-EEEEEcCh
Q 017091 297 TSALDSESEHYVKGVLHAL-RNDCKTKRTVIVIAHRLSTIKA-VDRIV-VIDDG-RIIEVGNH 355 (377)
Q Consensus 297 ts~LD~~~~~~i~~~l~~l-~~~~~~g~tvi~itH~l~~~~~-~d~v~-~l~~G-~i~~~g~~ 355 (377)
++++|+...++.++.+... .+ .|.|++ +|.+..+.. ||++. +|++| +++..|+.
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~---~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSR---GANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC---SSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHh---cCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999998888888876 42 366653 999998865 99999 99999 88766654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-12 Score=113.25 Aligned_cols=141 Identities=21% Similarity=0.150 Sum_probs=76.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCC-----------CCCeEEECCEeCCC--CCHHHHhcceEEEccCCcCc--cccHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEP-----------SDGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLL--QMDIKS 226 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p-----------~~G~I~i~g~~i~~--~~~~~~r~~i~~v~Q~~~l~--~~tv~e 226 (377)
.++|+|+||||||||++.++|...| ++|+|.++|.++.- ++....++..++++|...-. ..+|.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57899999976421 11111112233333321100 011111
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcc-ccc-CCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHH
Q 017091 227 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLV-DDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304 (377)
Q Consensus 227 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~-~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~ 304 (377)
+... .+.+.+..... +.......... ..+ ....|..-..+.+.+|++++.+|+++++| ||++|..+
T Consensus 111 ~~~~-----~s~~~~~~~~~-----~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~ 178 (191)
T 1oix_A 111 IAKH-----LTYENVERWLK-----ELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTN 178 (191)
T ss_dssp TTCH-----HHHHTHHHHHH-----HHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTT
T ss_pred CcCH-----HHHHHHHHHHH-----HHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCC
Confidence 1100 00011111111 11110000000 000 11123332334578899999999999999 99999999
Q ss_pred HHHHHHHHHH
Q 017091 305 EHYVKGVLHA 314 (377)
Q Consensus 305 ~~~i~~~l~~ 314 (377)
..++++.|.+
T Consensus 179 v~~l~~~l~~ 188 (191)
T 1oix_A 179 VEAAFQTILT 188 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988888764
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.9e-12 Score=130.16 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=102.3
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCC-CeEEECCEeCCCCCHHHHhcceEEEccCC---------
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIRWLREKIGFVGQEP--------- 217 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~-G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~--------- 217 (377)
.+++++++.+.+|+.++|+||||||||||+++|++++++.. |.+.+++.+.... ...++++|+..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHHH
Confidence 69999999999999999999999999999999999999887 7888888765543 34588887654
Q ss_pred -------------cCc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 218 -------------QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 218 -------------~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
..+ ..++.+|+............+.. ......++..... ++... ...+|+|++|++..++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~--~~~~~~~L~G~~~--~~~~~-~g~~~~g~~~~i~~g~~ 197 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA--TGAHAGALLGDVR--HDPFQ-SGGLGTPAHERVEPGMI 197 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC--TTCCHHHHHCEEC--CCCC-----CCCCGGGGEECCHH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc--CCCCHHhcCceEE--echhh-cCCccccccccccCcee
Confidence 111 22333333322110000000000 0011222222111 01110 13589999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHH
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHA 314 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~ 314 (377)
...++.+|++||... |++.....+.+.|.+
T Consensus 198 ~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 198 HRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999988 899999888888874
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-11 Score=113.06 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=60.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHh---hCCCCCCCeEE--------ECCEeCC-CCCHHHHhcceEEEccCC------cC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQIY--------IDGFPLT-DLDIRWLREKIGFVGQEP------QL 219 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~---gl~~p~~G~I~--------i~g~~i~-~~~~~~~r~~i~~v~Q~~------~l 219 (377)
++|++++|+|||||||||++++|+ |+..|++|.|. .+|.++. ......+++.+++++|.+ .+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999999 9999884 345667888999999754 23
Q ss_pred ccccHHHHHh
Q 017091 220 LQMDIKSNIM 229 (377)
Q Consensus 220 ~~~tv~eni~ 229 (377)
+..++.+|+.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 4556666654
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-11 Score=112.00 Aligned_cols=125 Identities=17% Similarity=0.199 Sum_probs=76.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC---CCCCCeEEE--------CCEeCCC-CCHHHHhcceEEEccCCc------Ccc
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY---EPSDGQIYI--------DGFPLTD-LDIRWLREKIGFVGQEPQ------LLQ 221 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~---~p~~G~I~i--------~g~~i~~-~~~~~~r~~i~~v~Q~~~------l~~ 221 (377)
+.+++|+|||||||||++++|++.+ .+++|++.. +|.++.. ....++++++++++|++. +..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5689999999999999999999876 788999987 6776642 234567788999998752 234
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCccccc---CCCCCChHHHHHHHHHHHHcCCCCEEEEeCcC
Q 017091 222 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV---DDDLLSGGQKQRIAIARAILRDPAILLLDEAT 297 (377)
Q Consensus 222 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~LSgGq~QRv~iAral~~~p~illlDEPt 297 (377)
.++.+++. .+++..++..+...+.+.....+..+.+ ++.-++|+ .++++++.+++++++.+++
T Consensus 85 ~~v~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 85 EDVSGEIR--------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp EECHHHHT--------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eeCchhhC--------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 56666653 1233333333333222222111111100 11235555 3455677889999988765
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-10 Score=101.33 Aligned_cols=36 Identities=25% Similarity=0.191 Sum_probs=31.3
Q ss_pred HHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHh
Q 017091 278 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 315 (377)
Q Consensus 278 v~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l 315 (377)
...|++++.+|+++++| ||++|+....++++.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999 9999999998888877653
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=6.4e-10 Score=116.50 Aligned_cols=134 Identities=19% Similarity=0.182 Sum_probs=90.9
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCC--CCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcC
Q 017091 154 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 231 (377)
Q Consensus 154 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~ 231 (377)
|+++++|..++|+|++|+|||||++.|++...+ ..|+| .+|..+.++...+.++.+++.+|...++..++..||.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456788999999999999999999999987655 78999 788888888887888889999998877655555555421
Q ss_pred CCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHH
Q 017091 232 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 311 (377)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~ 311 (377)
+... + . + .+ .....-..++-++++| |+.++++.++.. ++.
T Consensus 82 -pG~~-~--f-----------------------------~-~~----~~~~l~~ad~~ilVvD-~~~g~~~qt~~~-~~~ 121 (665)
T 2dy1_A 82 -PGYG-D--F-----------------------------V-GE----IRGALEAADAALVAVS-AEAGVQVGTERA-WTV 121 (665)
T ss_dssp -CCSG-G--G-----------------------------H-HH----HHHHHHHCSEEEEEEE-TTTCSCHHHHHH-HHH
T ss_pred -CCcc-c--h-----------------------------H-HH----HHHHHhhcCcEEEEEc-CCcccchhHHHH-HHH
Confidence 1110 0 0 0 00 0111113467788888 999999887633 233
Q ss_pred HHHhhccCCCCeEEEEEecCchh
Q 017091 312 LHALRNDCKTKRTVIVIAHRLST 334 (377)
Q Consensus 312 l~~l~~~~~~g~tvi~itH~l~~ 334 (377)
+.. .+..+|++.|.++.
T Consensus 122 ~~~------~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 122 AER------LGLPRMVVVTKLDK 138 (665)
T ss_dssp HHH------TTCCEEEEEECGGG
T ss_pred HHH------ccCCEEEEecCCch
Confidence 322 25678888887764
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.83 E-value=9.4e-12 Score=121.66 Aligned_cols=136 Identities=13% Similarity=0.133 Sum_probs=84.0
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 227 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 227 (377)
.+++++|+.+++|++++|+||||||||||+++|+|. .+|++..-+ ... ......+|++||...++ .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~~---~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LPL---DRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SCT---TTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--ccc---hhHHHHHHHhcchhHHH----HHH
Confidence 589999999999999999999999999999999995 468776511 111 11222478888876532 222
Q ss_pred HhcCCC--CCC-CHHHHHHHHHHcCHHHHHHh---------CCCCccccc-------CCCCCChHHHHHHHHHHHHcCCC
Q 017091 228 IMYGCP--KDV-KNEDIEWAAKQAYVHEFILS---------LPCGYETLV-------DDDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 228 i~~~~~--~~~-~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~-------~~~~LSgGq~QRv~iAral~~~p 288 (377)
+..... ... ....+. ....+.+.++. .|...+... ....+++|++||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 222111 000 000110 11123333321 000001000 12458999999999998899999
Q ss_pred CEEE-EeCcCC
Q 017091 289 AILL-LDEATS 298 (377)
Q Consensus 289 ~ill-lDEPts 298 (377)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999997
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.3e-10 Score=99.92 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=48.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHH
Q 017091 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNI 228 (377)
Q Consensus 150 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni 228 (377)
..+-.++.++|++++|+||||||||||+++|++.+ |.+.++|.++... ....+..+++++|++..+ ..++.+|+
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 33334667889999999999999999999999987 8999999877531 112233478888876544 33444443
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-09 Score=105.47 Aligned_cols=174 Identities=16% Similarity=0.179 Sum_probs=86.4
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhh--CCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCc-Cc-c-c
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ-LL-Q-M 222 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g--l~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-l~-~-~ 222 (377)
.+|++++++++ .++|+|++|||||||++.|.| ++++.+|.+.-....+.-.+...-....+..++.+. .| + .
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFA 101 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHH
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHH
Confidence 58999999998 999999999999999999999 778888877544432211000000112333332221 11 1 0
Q ss_pred cHHH-----HHhc-CCCCCCCHHHHHHHHHHc---CHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEE
Q 017091 223 DIKS-----NIMY-GCPKDVKNEDIEWAAKQA---YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLL 293 (377)
Q Consensus 223 tv~e-----ni~~-~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illl 293 (377)
.+.+ +... +.....+...+. .+.. ...-.+-..| |+.......+.++.++|+..+++..+.+|+++|+
T Consensus 102 ~v~~~i~~~~~~~~g~~~~~s~~~i~--l~i~~~~~~~l~lvDtP-G~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iil 178 (360)
T 3t34_A 102 AVRKEIQDETDRETGRSKAISSVPIH--LSIYSPNVVNLTLIDLP-GLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIIL 178 (360)
T ss_dssp HHHHHHHHHHHHTSCTTCCCCCSCEE--EEEEETTSCSEEEEECC-CBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCcccceEE--EEEeCCCCCCeEEEECC-CCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEE
Confidence 1111 1111 000000000000 0000 0000001122 2211111124678899999999999999998888
Q ss_pred eCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 017091 294 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 330 (377)
Q Consensus 294 DEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH 330 (377)
.-..+..|..+ ....++++.+... ...+++++|.
T Consensus 179 vv~~~~~~~~~-~~~~~l~~~~~~~--~~~~i~V~nK 212 (360)
T 3t34_A 179 AISPANQDLAT-SDAIKISREVDPS--GDRTFGVLTK 212 (360)
T ss_dssp EEEETTSCGGG-CHHHHHHHHSCTT--CTTEEEEEEC
T ss_pred EeecccCCcCC-HHHHHHHHHhccc--CCCEEEEEeC
Confidence 75444555443 3445666666432 2357777776
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.80 E-value=7.9e-10 Score=98.39 Aligned_cols=71 Identities=24% Similarity=0.360 Sum_probs=56.4
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCCC-------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCcc
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 221 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 221 (377)
+...+|++++|+||||||||||++.|++.++ |..|+ ++|.+..-.+...+++.+ .|+.+++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 3445899999999999999999999999876 67787 688887767777776654 57777778
Q ss_pred ccHHHHHhcC
Q 017091 222 MDIKSNIMYG 231 (377)
Q Consensus 222 ~tv~eni~~~ 231 (377)
.++.+| .||
T Consensus 89 ~~~~~n-~YG 97 (197)
T 3ney_A 89 GSYQGN-MFG 97 (197)
T ss_dssp EEETTE-EEE
T ss_pred hhhhce-ecc
Confidence 888888 466
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2e-10 Score=102.07 Aligned_cols=61 Identities=33% Similarity=0.428 Sum_probs=47.2
Q ss_pred EEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeE--EECCEeCC
Q 017091 135 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI--YIDGFPLT 199 (377)
Q Consensus 135 ~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I--~i~g~~i~ 199 (377)
+|+++.++. ..+.+..++..++|++++|+|||||||||++++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~~---~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECS---VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CC---CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCcccccc---cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 466666643 357888999999999999999999999999999999997 78988 88886654
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.5e-10 Score=102.72 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=35.8
Q ss_pred cEEEEEE-EEEcCCCCCCCceeeeeEEEeC---CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 131 HVQFVNI-SFHYPSRPTVPILNHVCLTIEA---NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 131 ~i~~~~v-~~~y~~~~~~~vL~~isl~i~~---Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++++|+ +|+|++ ..++|+|+||+|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 24799999999999 9999999999999999999999855
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.7e-09 Score=92.84 Aligned_cols=69 Identities=17% Similarity=0.140 Sum_probs=49.3
Q ss_pred ce--eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCE--eCCCCCH----HHHhcceEEEccCCc
Q 017091 149 IL--NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF--PLTDLDI----RWLREKIGFVGQEPQ 218 (377)
Q Consensus 149 vL--~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~--~i~~~~~----~~~r~~i~~v~Q~~~ 218 (377)
.+ +++++++.+| +++|+||||||||||+++|.+++.+..|...-.+. ++-.... ...+..|.+++|++.
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 45 7899999999 99999999999999999999998887775432221 1111000 012456999999863
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.74 E-value=4e-09 Score=93.37 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=41.7
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC-eEEECCEeCCCCCHHHHhcceEEEccCCcCc
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEPQLL 220 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 220 (377)
+++++|++++|+|||||||||++++|++++.|+.| .+ +....... ......++|++|++..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i---~~~~~~~~-~~~~~~~~~~~~~~~~~ 63 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSI---SMTTRQMR-EGEVDGVDYFFKTRDAF 63 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCC---CEECSCCC-TTCCBTTTBEECCHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEec---ccccCCCC-CCccCCCceEEcCHHHH
Confidence 46889999999999999999999999999977666 33 22222111 11123488888876443
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-08 Score=102.39 Aligned_cols=118 Identities=19% Similarity=0.312 Sum_probs=78.0
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 227 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 227 (377)
..++++++.+++| +.|+||+|+|||||++++++... + | ++..+..+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~------------------------~------~-f~~is~~~~ 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN------------------------V------P-FFHISGSDF 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT------------------------C------C-EEEEEGGGT
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC------------------------C------C-eeeCCHHHH
Confidence 4678888888888 88999999999999999998321 0 0 011111111
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcC----------
Q 017091 228 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT---------- 297 (377)
Q Consensus 228 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPt---------- 297 (377)
+.. +. | .|++++|-.+++|....|.+|++||+.
T Consensus 86 ~~~--------------------------~~-g----------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 86 VEL--------------------------FV-G----------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp TTC--------------------------CT-T----------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred HHH--------------------------Hh-c----------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 000 00 1 367889999999999999999999993
Q ss_pred CCCCHHHHHHHHHHHHHhhcc-CCCCeEEEEEecCchhH
Q 017091 298 SALDSESEHYVKGVLHALRND-CKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 298 s~LD~~~~~~i~~~l~~l~~~-~~~g~tvi~itH~l~~~ 335 (377)
++.|+...+.+.+++..+... ...+..||.+||+++.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 467777666666666655311 01367899999998653
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=9.5e-10 Score=96.14 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCC-CCCeEEE
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYI 193 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~i 193 (377)
+|++++|+||||||||||+++|++++++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6899999999999999999999999874 5566644
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-07 Score=91.59 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=45.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeE-EECCEeCCCCCHHHHhcceEEEccCCc
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-YIDGFPLTDLDIRWLREKIGFVGQEPQ 218 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I-~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 218 (377)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++.... +. .+.+++|+.+|+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~-~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DP-VYAKNLGVDLKSLL 117 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH-HHHHHHTCCGGGCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--ch-HHHHHcCCchhhhh
Confidence 489999999999999999999999999888777876 55554322 22 24455777766543
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.70 E-value=4.3e-09 Score=100.65 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=59.5
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCH----HHH-----hcceEEE-ccCCc
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWL-----REKIGFV-GQEPQ 218 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~----~~~-----r~~i~~v-~Q~~~ 218 (377)
+++++||++++|++++|+|+|||||||++..|++.+.+..|+|.+.+.|+..... ..+ +..+.++ +|...
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 3478899999999999999999999999999999999999999998887654221 223 4568888 66543
Q ss_pred Ccc-ccHHHHH
Q 017091 219 LLQ-MDIKSNI 228 (377)
Q Consensus 219 l~~-~tv~eni 228 (377)
..+ .++.+++
T Consensus 174 ~~p~~~~~~~l 184 (320)
T 1zu4_A 174 ADPASVVFDAI 184 (320)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 332 2344443
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-10 Score=117.53 Aligned_cols=140 Identities=16% Similarity=0.167 Sum_probs=95.4
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 212 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 212 (377)
+++++...|.. ..+++++++++++| +.|+||||+|||||+++|++... .|.+.++|.++.........+++..
T Consensus 42 ~l~~lv~~l~~---~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHHC---GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhhc---hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 44555545542 25899999999999 99999999999999999999874 7899999988765433334455778
Q ss_pred EccCCc-Cc-cccHHHHHh-cCCCCCC----CHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 213 VGQEPQ-LL-QMDIKSNIM-YGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 213 v~Q~~~-l~-~~tv~eni~-~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
++|... .. ...+.|+|. ++..... ..++..+. +..++. .||||++|+..+++|..
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~-----l~~LL~-------------~Ldg~~~~~~viviAat 176 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLLV-------------EMDGFEKDTAIVVMAAT 176 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHH-----HHHHHH-------------HGGGCCSSCCCEEEECC
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHH-----HHHHHH-------------HhcccccCccEEEEEec
Confidence 888764 22 345667773 3321110 11111111 122332 27899999999999999
Q ss_pred CCCCEEEEeCcCCC
Q 017091 286 RDPAILLLDEATSA 299 (377)
Q Consensus 286 ~~p~illlDEPts~ 299 (377)
++|++ ||||.-.
T Consensus 177 n~p~~--LD~aLlr 188 (499)
T 2dhr_A 177 NRPDI--LDPALLR 188 (499)
T ss_dssp SCGGG--SCTTTSS
T ss_pred CChhh--cCccccc
Confidence 99987 8998763
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-08 Score=99.74 Aligned_cols=142 Identities=18% Similarity=0.254 Sum_probs=81.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcC----ccccHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE-----------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL----LQMDIKS 226 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~-----------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l----~~~tv~e 226 (377)
+++|+|++|||||||++.|+|... |++|.|.++|.++. +....|++.+.|.- |..| .+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~t-l~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVT-LS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHH-HH
Confidence 499999999999999999999875 67799999997652 22346776664431 1112 22
Q ss_pred HH------hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCC-Cccc-c-cC-CCCCChHHHHHHHHH----HHH-cCCCCEE
Q 017091 227 NI------MYGCPKDVKNEDIEWAAKQAYVHEFILSLPC-GYET-L-VD-DDLLSGGQKQRIAIA----RAI-LRDPAIL 291 (377)
Q Consensus 227 ni------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~-~-~~-~~~LSgGq~QRv~iA----ral-~~~p~il 291 (377)
.+ .+...............+ ...+.+..+.. +... . .+ ...+|+|++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 22 111110111100111111 11222322211 1100 0 11 134788888988877 666 545555
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhh
Q 017091 292 LLDEATSALDSESEHYVKGVLHALR 316 (377)
Q Consensus 292 llDEPts~LD~~~~~~i~~~l~~l~ 316 (377)
+|+|++|......+.+.|.++.
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHh
Confidence 8999999999999988887653
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.2e-08 Score=88.67 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=24.9
Q ss_pred EcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 140 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 140 ~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+|+.++...+++||||++++|++++|+|++||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 454444457999999999999999999999999999999999766
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.1e-08 Score=89.02 Aligned_cols=70 Identities=20% Similarity=0.196 Sum_probs=43.3
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH---HhcCeEEEEeC
Q 017091 270 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI---KAVDRIVVIDD 346 (377)
Q Consensus 270 LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~---~~~d~v~~l~~ 346 (377)
.+.|+.+|..+++.+..+|+.+..+ .+.++|.....+.+.+... .+.++|+.+|.+... ..||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-----~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-----TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-----CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-----CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3688999999999888888654333 3456666665555554432 245788888987654 34899999863
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-08 Score=90.68 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=38.8
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccc
Q 017091 154 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM 222 (377)
Q Consensus 154 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ 222 (377)
-=++++|++++|+|++||||||+++.|.+.++ .+.+++|++.++..
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 34678899999999999999999999999874 37888888877643
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.51 E-value=8.6e-08 Score=102.02 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=52.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCcCC-CCCHHHHHHHHHHHHHhhccCCCCeEEEE-EecCchhHHh-cC
Q 017091 269 LLSGGQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVKGVLHALRNDCKTKRTVIV-IAHRLSTIKA-VD 339 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~illlDEPts-~LD~~~~~~i~~~l~~l~~~~~~g~tvi~-itH~l~~~~~-~d 339 (377)
.+|+|+.+|..++++++.+++++|+|||.. +||......+++.+.... ...+++++ +||+.+.+.. ++
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~---~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR---PDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC---TTCEEEEEESCSCCHHHHHHTT
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC---CCceEEEEeccccHHHHHHHhc
Confidence 379999999999999999999999999997 999876555555554432 23567777 5999887653 54
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.49 E-value=1e-07 Score=91.58 Aligned_cols=130 Identities=12% Similarity=0.128 Sum_probs=80.6
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHH
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 228 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni 228 (377)
-|+.+.--+.+|+++.|.|++|+|||||+.-++.-.....+ .+.|+.= .++..+-.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~-------------------~Vl~fSl-----Ems~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR-------------------GVAVFSL-----EMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------------EEEEEES-----SSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-------------------eEEEEeC-----CCCHHHHH
Confidence 56666556899999999999999999999888754322111 2334321 12211110
Q ss_pred hcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHH
Q 017091 229 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 308 (377)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i 308 (377)
.++........+..+.. ..||.++++|++.|...+.+++++|.|+|...+| .+
T Consensus 91 ----------~Rlls~~~~v~~~~l~~------------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i 143 (338)
T 4a1f_A 91 ----------LRALSDLTSINMHDLES------------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QI 143 (338)
T ss_dssp ----------HHHHHHHHCCCHHHHHH------------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HH
T ss_pred ----------HHHHHHhhCCCHHHHhc------------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HH
Confidence 01111111222222221 2589999999999999999999999999876544 34
Q ss_pred HHHHHHhhccCCCCeEEEEEec
Q 017091 309 KGVLHALRNDCKTKRTVIVIAH 330 (377)
Q Consensus 309 ~~~l~~l~~~~~~g~tvi~itH 330 (377)
...+++++++ ..|..+|+|-|
T Consensus 144 ~~~ir~l~~~-~gg~~lIVIDy 164 (338)
T 4a1f_A 144 RLQLRKLKSQ-HKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHH-CTTEEEEEEEE
T ss_pred HHHHHHHHHh-cCCCCEEEEec
Confidence 5555555443 11678888754
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=4e-08 Score=84.82 Aligned_cols=38 Identities=26% Similarity=0.442 Sum_probs=33.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 199 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~ 199 (377)
.+|++++|+|+|||||||+++.|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999875 88999887664
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.4e-07 Score=87.85 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=47.7
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEe-CcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEe--cCch
Q 017091 268 DLLSGGQKQRIAIARAILRDPAILLLD-EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA--HRLS 333 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~~~p~illlD-EPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~it--H~l~ 333 (377)
..+|+|++|++. +.+...++-++++| +|++++|......+.+.+.... .+..+|+|. ||+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~----~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF----KDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT----TTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc----CCCCEEEEEECcccC
Confidence 357999999887 66666788889999 9999999988877777776542 266788888 8874
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.37 E-value=8.4e-08 Score=85.13 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=39.7
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 202 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~ 202 (377)
.++|++++|+|+||||||||++.|.+++++..|.|.+.+.+....+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 5678999999999999999999999999988999988776654433
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-07 Score=85.69 Aligned_cols=63 Identities=22% Similarity=0.153 Sum_probs=48.2
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCC------CHHH----HhcceEEEccCCcCc
Q 017091 154 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL------DIRW----LREKIGFVGQEPQLL 220 (377)
Q Consensus 154 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~------~~~~----~r~~i~~v~Q~~~l~ 220 (377)
+.+.++|++++|.|+||||||||+++|+|+ .|+|.+.+.+.... .... .++.+++++|.+.++
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~ 86 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTL 86 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHH
Confidence 345678999999999999999999999998 78999998875321 1211 134688999877554
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.34 E-value=9.6e-07 Score=85.34 Aligned_cols=49 Identities=10% Similarity=0.078 Sum_probs=34.6
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
.+|.+|++||+... |+.....+.+.+.++......+.++|++||+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 46889999999876 88777777666655432101367899999998543
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.5e-07 Score=84.09 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=29.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCC-CCCeEE
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIY 192 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p-~~G~I~ 192 (377)
++|++++|+||||||||||++.|++.++| ..+.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~ 41 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSIS 41 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEe
Confidence 57999999999999999999999999987 333333
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.24 E-value=1e-07 Score=91.09 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=36.8
Q ss_pred CceeeeeEEEeCCc------EEEEEcCCCCcHHHHHHHHhhCCC--CCCCeEE
Q 017091 148 PILNHVCLTIEANE------VVAIVGLSGSGKSTFVNLLLRLYE--PSDGQIY 192 (377)
Q Consensus 148 ~vL~~isl~i~~Ge------~~~ivG~nGsGKSTLl~~l~gl~~--p~~G~I~ 192 (377)
+.|++++..+.+++ ++||+||||||||||+++|.+++. |++|.+.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~ 126 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVE 126 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEE
Confidence 46777777777776 999999999999999999999987 4555543
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.8e-07 Score=95.67 Aligned_cols=61 Identities=30% Similarity=0.343 Sum_probs=47.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC-eEE-ECCEeCCC-------CCHH---HHhcceEEEccC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIY-IDGFPLTD-------LDIR---WLREKIGFVGQE 216 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~-i~g~~i~~-------~~~~---~~r~~i~~v~Q~ 216 (377)
.+++|++++|+|+||||||||+++|+|.+.|++| +|. +||.++.. ++.. ..++++++++|+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~ 437 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE 437 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999987 784 89876532 1221 223457777775
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=6.7e-07 Score=85.41 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=25.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
-+++|+++.|.||+|||||||+..++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999888764
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=98.15 E-value=5.7e-07 Score=85.06 Aligned_cols=146 Identities=17% Similarity=0.142 Sum_probs=77.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEEC-CEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCH
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID-GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN 238 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~-g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~ 238 (377)
+.+++|+|++|+|||||++.|.|.. +.+. +.+- ....+..++++++..-+ ++.| .+....
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~-----tTr~~~~gi~~~~~~~i--~~iD------TpG~~~ 68 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQ-----TTRHRIVGIHTEGAYQA--IYVD------TPGLHM 68 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSS-----CCSSCEEEEEEETTEEE--EEES------SSSCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCC-----cceeeEEEEEEECCeeE--EEEE------CcCCCc
Confidence 4489999999999999999999863 2221 1110 11133467777754311 1111 111110
Q ss_pred HHHHHHHHHcCHHHHHHhCCC---Ccccc---cCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCcCCCCCHHH-HHHHH
Q 017091 239 EDIEWAAKQAYVHEFILSLPC---GYETL---VDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDSES-EHYVK 309 (377)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~~~---~~~~~---~~~~~LSgGq~QRv~iAral~--~~p~illlDEPts~LD~~~-~~~i~ 309 (377)
.....+.. .+...... ..+.. +....+|+|++ .+++++. ..|.++++ +.+|... ...+.
T Consensus 69 -~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~ 136 (301)
T 1ega_A 69 -EEKRAINR----LMNKAASSSIGDVELVIFVVEGTRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLL 136 (301)
T ss_dssp -HHHHHHHH----HHTCCTTSCCCCEEEEEEEEETTCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHH
T ss_pred -cchhhHHH----HHHHHHHHHHhcCCEEEEEEeCCCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHH
Confidence 00111110 11111011 11111 11223898886 5566666 78999998 7888876 56677
Q ss_pred HHHHHhhccCCCCeEEEEEecCchhHH
Q 017091 310 GVLHALRNDCKTKRTVIVIAHRLSTIK 336 (377)
Q Consensus 310 ~~l~~l~~~~~~g~tvi~itH~l~~~~ 336 (377)
+.+.++.+.......+.+++|+-..+.
T Consensus 137 ~~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 137 PHLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp HHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred HHHHHHHHhcCcCceEEEECCCCCCHH
Confidence 777777643211236667777765543
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-06 Score=84.71 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=25.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999988874
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.6e-07 Score=89.69 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=48.7
Q ss_pred cccEEEEEEEEEcCCCCCCCcee--------------eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 129 MGHVQFVNISFHYPSRPTVPILN--------------HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~--------------~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+.+.|+||++.|+.. +..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 131 ~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3468999999999864 46888 899999999999999999999999999999876
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.11 E-value=8.4e-06 Score=80.78 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 198 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i 198 (377)
++.+++++||+||||||++..|++.+.+..++|.+-+.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999998888898866664
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.9e-06 Score=81.58 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=26.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCCCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~ 188 (377)
.++..+.|.||+|+|||||++.+++...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999998776543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=98.08 E-value=4.7e-07 Score=92.62 Aligned_cols=60 Identities=10% Similarity=0.208 Sum_probs=48.7
Q ss_pred EEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEe
Q 017091 134 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 197 (377)
Q Consensus 134 ~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 197 (377)
++++.+.|.. ..+++++++++ +|+.++|+||||||||||+++|++...+..|.|.++|..
T Consensus 86 ~~~vk~~i~~---~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 86 LEKVKERILE---YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR 145 (543)
T ss_dssp CHHHHHHHHH---HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred HHHHHHHHHH---HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence 4455555532 24788888888 899999999999999999999999999999999887743
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.7e-05 Score=71.69 Aligned_cols=75 Identities=19% Similarity=0.246 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHH----------HHHHHHHHHHHhhccC-CCCeEEEEEecCchh-----
Q 017091 271 SGGQKQRIAIARAILRDPAILLLDEATSALDSE----------SEHYVKGVLHALRNDC-KTKRTVIVIAHRLST----- 334 (377)
Q Consensus 271 SgGq~QRv~iAral~~~p~illlDEPts~LD~~----------~~~~i~~~l~~l~~~~-~~g~tvi~itH~l~~----- 334 (377)
+++++.|..++++...+|.+|++||+.+-++.. ....++..+....... ..+..+|.+|++++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 467778888888888899999999998876542 2223333333331100 023567778887643
Q ss_pred HHhcCeEEEEe
Q 017091 335 IKAVDRIVVID 345 (377)
Q Consensus 335 ~~~~d~v~~l~ 345 (377)
..++++++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 23477766654
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=6.6e-06 Score=81.88 Aligned_cols=44 Identities=14% Similarity=0.313 Sum_probs=35.2
Q ss_pred CCCCEEEEeCcCCCCCH-HHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 017091 286 RDPAILLLDEATSALDS-ESEHYVKGVLHALRNDCKTKRTVIVIAHRL 332 (377)
Q Consensus 286 ~~p~illlDEPts~LD~-~~~~~i~~~l~~l~~~~~~g~tvi~itH~l 332 (377)
.+|++|++||+..-.+. .++..+...+..+.. .|+.+|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~---~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD---SGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT---TTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH---CCCeEEEEECCC
Confidence 48999999999887764 677778888887653 478899999984
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.03 E-value=6.2e-07 Score=86.33 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=46.8
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCC
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 199 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~ 199 (377)
.+++++++.+.+|.+++|+|++|+|||||++.|++.+.+..|+|.+-+.+..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 4889999999999999999999999999999999999888888888766653
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.2e-06 Score=75.84 Aligned_cols=40 Identities=30% Similarity=0.314 Sum_probs=33.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC--eEEECCEeC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFPL 198 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G--~I~i~g~~i 198 (377)
.+|++++|+|++||||||++++|.+.++| .| .|.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 46899999999999999999999998866 56 666676544
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.98 E-value=2.7e-06 Score=72.82 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=27.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 195 (377)
.|++++|+|||||||||++++|++.+.+ +.+++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998753 45554
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.2e-05 Score=74.60 Aligned_cols=130 Identities=14% Similarity=0.215 Sum_probs=75.3
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 227 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~en 227 (377)
+.|+.+.--+++|+++.|.|++|+|||||+..++.-.-- .| ..+.|+.-+ ++..+-
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~slE-----~s~~~l 111 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSLE-----MGKKEN 111 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEESS-----SCHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEECC-----CCHHHH
Confidence 467777766999999999999999999999877742210 11 124443322 121111
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCC--CChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHH
Q 017091 228 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305 (377)
Q Consensus 228 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~ 305 (377)
. .++........+..+.. .. ||.++++|+..|...+.++++++.|+|...++
T Consensus 112 ~----------~R~~~~~~~i~~~~l~~------------~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~---- 165 (315)
T 3bh0_A 112 I----------KRLIVTAGSINAQKIKA------------ARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVN---- 165 (315)
T ss_dssp H----------HHHHHHHTTCCHHHHHS------------CHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHH----
T ss_pred H----------HHHHHHHcCCCHHHHhc------------CCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHH----
Confidence 0 00000000111222110 12 78899999999988888889999998864432
Q ss_pred HHHHHHHHHhhccCCCCeE--EEEEec
Q 017091 306 HYVKGVLHALRNDCKTKRT--VIVIAH 330 (377)
Q Consensus 306 ~~i~~~l~~l~~~~~~g~t--vi~itH 330 (377)
.+...++++.++ .+.. +|+|-|
T Consensus 166 -~i~~~i~~l~~~--~~~~~~lVVID~ 189 (315)
T 3bh0_A 166 -YIWSKTRQTKRK--NPGKRVIVMIDY 189 (315)
T ss_dssp -HHHHHHHHHHHT--SSSCCEEEEEEC
T ss_pred -HHHHHHHHHHHh--cCCCCeEEEEeC
Confidence 344445555432 2455 777754
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=4.1e-06 Score=83.27 Aligned_cols=68 Identities=31% Similarity=0.381 Sum_probs=40.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC------------CCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNI 228 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni 228 (377)
.++|+|+||+|||||++.|+|... |.+|.+.++|.++.-++..-.++..++.+|....| ..+..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 799999999999999999999854 67899999998664333222334445555655444 23444454
Q ss_pred h
Q 017091 229 M 229 (377)
Q Consensus 229 ~ 229 (377)
.
T Consensus 262 ~ 262 (439)
T 1mky_A 262 E 262 (439)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=8.2e-05 Score=67.23 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDG 189 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G 189 (377)
.++|+|++|+|||||++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999997766555
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=3.2e-06 Score=81.57 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=36.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 199 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~ 199 (377)
+++.+++|+|++|||||||++.|.|.+.|.+|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 356799999999999999999999999999999988776654
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.88 E-value=6e-06 Score=74.86 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=32.4
Q ss_pred ceeeeeEEEe---CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEEC
Q 017091 149 ILNHVCLTIE---ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 194 (377)
Q Consensus 149 vL~~isl~i~---~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~ 194 (377)
-|.++|+++. +|.+++|.|++||||||+++.|...+.+ .+.+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 3666666665 8999999999999999999999999887 6666543
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=8.1e-06 Score=68.95 Aligned_cols=31 Identities=26% Similarity=0.540 Sum_probs=25.4
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhh
Q 017091 151 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 151 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666665 999999999999999999873
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=3.5e-06 Score=75.04 Aligned_cols=43 Identities=28% Similarity=0.247 Sum_probs=37.4
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC--eEEECCEe
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFP 197 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G--~I~i~g~~ 197 (377)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.+++.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 45678999999999999999999999999988888 78887543
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=4.4e-06 Score=73.41 Aligned_cols=57 Identities=21% Similarity=0.440 Sum_probs=38.8
Q ss_pred EEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC--------CCCCCCeEEECCEe
Q 017091 138 SFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--------YEPSDGQIYIDGFP 197 (377)
Q Consensus 138 ~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl--------~~p~~G~I~i~g~~ 197 (377)
+++|++- ..+++++|+..+++ .++++|++|+|||||++.+.+- ..++.+.+.++|..
T Consensus 6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 4566653 36899999998887 5789999999999999999862 22345666666643
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.79 E-value=3.4e-05 Score=72.57 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=26.8
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+.++++..+.|.||+|+|||||++.+++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788999999999999999999999865
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.77 E-value=7.8e-06 Score=80.84 Aligned_cols=61 Identities=18% Similarity=0.191 Sum_probs=50.6
Q ss_pred EEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC
Q 017091 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 200 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~ 200 (377)
..+++++.|+.. . ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.+.|+..
T Consensus 78 v~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 78 VYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp HHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred HHHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 345667778642 1 678888 899999999999999999999999999999999998877643
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.72 E-value=2.2e-05 Score=68.38 Aligned_cols=48 Identities=21% Similarity=0.394 Sum_probs=27.1
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC----CCC----CCCeEEECCE
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL----YEP----SDGQIYIDGF 196 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl----~~p----~~G~I~i~g~ 196 (377)
.+++++|++.++. .++++|++|+|||||++.+.+- +.| +.+.+.++|.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 3789999988877 7899999999999999999972 223 3455556654
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=5.4e-05 Score=71.66 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEP 186 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p 186 (377)
+..+.|.||+|+|||||++.+++...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 467999999999999999999986643
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.71 E-value=3.6e-05 Score=69.60 Aligned_cols=143 Identities=17% Similarity=0.201 Sum_probs=74.9
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCc-cccHHHHHhcCCCCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKD 235 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~ 235 (377)
+..|+.++++||+||||||++.++........|. ...++++.+.|... ..++.+++.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 3568999999999999999988764321111110 12467777777654 456677765321111
Q ss_pred CCHHHHHHHHHHcCHHHHHHhCCCCcccccC--C---CCCChHHHHHHHHHHHHcCCCCEEEEeCcCC-CCCHHHHHHHH
Q 017091 236 VKNEDIEWAAKQAYVHEFILSLPCGYETLVD--D---DLLSGGQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVK 309 (377)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~---~~LSgGq~QRv~iAral~~~p~illlDEPts-~LD~~~~~~i~ 309 (377)
... ..+. . ...+.... . .-.+.|...+.. +..+.+-+++++||+-. ++|........
T Consensus 137 ~~~--------~~g~-----~--~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l 199 (235)
T 3llm_A 137 PGK--------SCGY-----S--VRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVL 199 (235)
T ss_dssp TTS--------SEEE-----E--ETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHH
T ss_pred cCc--------eEEE-----e--echhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHH
Confidence 000 0000 0 00000000 0 013567666653 34689999999999976 57776553333
Q ss_pred HHHHHhhccCCCCeEEEE-EecCchhH
Q 017091 310 GVLHALRNDCKTKRTVIV-IAHRLSTI 335 (377)
Q Consensus 310 ~~l~~l~~~~~~g~tvi~-itH~l~~~ 335 (377)
+.+.... ..-.++++ .|.+.+.+
T Consensus 200 ~~i~~~~---~~~~~il~SAT~~~~~~ 223 (235)
T 3llm_A 200 RDVVQAY---PEVRIVLMSATIDTSMF 223 (235)
T ss_dssp HHHHHHC---TTSEEEEEECSSCCHHH
T ss_pred HHHHhhC---CCCeEEEEecCCCHHHH
Confidence 3333321 11234444 34555544
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.67 E-value=2.6e-05 Score=66.77 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999865
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.65 E-value=6.7e-06 Score=72.77 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=26.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
...+|.+++|+||||||||||.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 457899999999999999999999998764
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.64 E-value=7.3e-06 Score=77.32 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=49.9
Q ss_pred EEEEEEEEcCCCCCCCceee-eeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCC
Q 017091 133 QFVNISFHYPSRPTVPILNH-VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 200 (377)
Q Consensus 133 ~~~~v~~~y~~~~~~~vL~~-isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~ 200 (377)
..+++...|++. . ++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...
T Consensus 76 ~~~~l~~~~~~~---~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 76 VYDELSNLFGGD---K--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp HHHHHHHHTTCS---C--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred HHHHHHHHhccc---c--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 345566667542 1 56 788876 99999999999999999999999999888999988777643
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00048 Score=66.50 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=28.8
Q ss_pred CceeeeeE---EEeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 148 PILNHVCL---TIEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 148 ~vL~~isl---~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+.|+.+ + -+++|+++.|.||+|||||||...++.-.
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345555 3 38899999999999999999998777543
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00017 Score=66.63 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+.++..+.|.||+|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4566789999999999999999998754
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.56 E-value=2.8e-06 Score=81.34 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=43.2
Q ss_pred CceeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeC
Q 017091 148 PILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 198 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~--~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i 198 (377)
.+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+.+.+.+.+.
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 589999999999998 999999999999999999999877776655444443
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=3.5e-05 Score=66.98 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=26.6
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 152 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 152 ~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
++|++..+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999875
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.55 E-value=2.7e-05 Score=67.56 Aligned_cols=40 Identities=38% Similarity=0.542 Sum_probs=33.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeE-EECC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-YIDG 195 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I-~i~g 195 (377)
...+|.+++|+|++||||||+.+.|++.+.+..|.+ .+++
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 345789999999999999999999999988777766 3443
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=4.8e-05 Score=67.51 Aligned_cols=30 Identities=27% Similarity=0.581 Sum_probs=24.7
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 017091 151 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 181 (377)
Q Consensus 151 ~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~ 181 (377)
.+.++++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3456666664 99999999999999999886
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.52 E-value=5.9e-05 Score=66.16 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
..+.|.||+|+|||||++.++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999997654
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=6.2e-06 Score=75.06 Aligned_cols=55 Identities=29% Similarity=0.259 Sum_probs=36.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHh---hCCCCCCCeEE--------ECCEeCCCCC-HHHHhcceEEEc
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQIY--------IDGFPLTDLD-IRWLREKIGFVG 214 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~---gl~~p~~G~I~--------i~g~~i~~~~-~~~~r~~i~~v~ 214 (377)
.-+++|.||+||||||+.+.|+ |+...+.|.++ -.|.++.... ..++...+.+.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~ 75 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGV 75 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEE
Confidence 3489999999999999999998 65556666662 3455544321 223444555655
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.49 E-value=6.7e-06 Score=79.69 Aligned_cols=57 Identities=28% Similarity=0.286 Sum_probs=36.8
Q ss_pred ccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECC
Q 017091 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195 (377)
Q Consensus 130 ~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 195 (377)
+.+.++|++..|+. +.++++++|+| +|+|++|+|||||++.|.|...+..|.+..++
T Consensus 16 ~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 16 GYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp -----CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred ceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 45888999888864 35889999977 99999999999999999988666666554444
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.49 E-value=4.5e-05 Score=68.07 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
++..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987554
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00011 Score=62.21 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999998653
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.42 E-value=7.5e-05 Score=64.15 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.++|-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.41 E-value=3.3e-05 Score=73.57 Aligned_cols=43 Identities=12% Similarity=0.301 Sum_probs=32.8
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 334 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~ 334 (377)
+++++++|| ...+++.....+.+.+.+.. ....+|++|++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~----~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS----GVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT----TTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC----CCceEEEEeCchhh
Confidence 678999999 67899988888888887653 34567778877654
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.40 E-value=7e-05 Score=65.77 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00074 Score=67.00 Aligned_cols=175 Identities=15% Similarity=0.165 Sum_probs=92.3
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC-eEEECCEeCCCCCHHHHhcce-EEEccCCcCccccHH
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKI-GFVGQEPQLLQMDIK 225 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i-~~v~Q~~~l~~~tv~ 225 (377)
+.|+.+.--+++|+++.|.|++|+|||||+.-++.-.....| .+.+-.. ..+..++..++ +.... +-...++
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl---E~~~~~l~~R~~~~~~~---i~~~~l~ 261 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL---EMPAAQLTLRMMCSEAR---IDMNRVR 261 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES---SSCHHHHHHHHHHHHTT---CCTTTCC
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC---CCCHHHHHHHHHHHHcC---CCHHHHh
Confidence 467777766999999999999999999999888765432223 3333221 12333332221 00000 0000000
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCcCCCCCH-
Q 017091 226 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDS- 302 (377)
Q Consensus 226 eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~--~~p~illlDEPts~LD~- 302 (377)
-+ ..++++.....+. .+.+...|.-. .....+|..+. .+.+|.+. .+|+++++|..+.-.+.
T Consensus 262 ----~g---~l~~~~~~~~~~a---~~~l~~~~l~i---~d~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~ 326 (444)
T 2q6t_A 262 ----LG---QLTDRDFSRLVDV---ASRLSEAPIYI---DDTPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPG 326 (444)
T ss_dssp ----GG---GCCHHHHHHHHHH---HHHHHTSCEEE---ECCTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-
T ss_pred ----CC---CCCHHHHHHHHHH---HHHHhcCCEEE---ECCCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCc
Confidence 00 1223332222211 12222222111 11234676654 44556665 58999999999865543
Q ss_pred -----HH----HHHHHHHHHHhhccCCCCeEEEEEecC-----------c--h------hHH-hcCeEEEEe
Q 017091 303 -----ES----EHYVKGVLHALRNDCKTKRTVIVIAHR-----------L--S------TIK-AVDRIVVID 345 (377)
Q Consensus 303 -----~~----~~~i~~~l~~l~~~~~~g~tvi~itH~-----------l--~------~~~-~~d~v~~l~ 345 (377)
.+ ...+...|+.+.++ .+.+||+++|- + + .+. .||.|++|.
T Consensus 327 ~~~~~~~r~~~i~~i~~~Lk~lAke--~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 327 SGKSGENRQQEIAAISRGLKALARE--LGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp ------CHHHHHHHHHHHHHHHHHH--HTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHH--hCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 11 23455556666553 47899999981 1 1 234 389999985
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.38 E-value=4.1e-05 Score=67.35 Aligned_cols=35 Identities=31% Similarity=0.528 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 198 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i 198 (377)
..+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4689999999999999999998865 4556655443
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.38 E-value=7.4e-05 Score=73.08 Aligned_cols=41 Identities=29% Similarity=0.490 Sum_probs=33.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhC-----------CCCCCCeEEECCE
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRL-----------YEPSDGQIYIDGF 196 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl-----------~~p~~G~I~i~g~ 196 (377)
.+..|..++|+|++|+|||||++.|+|. ..|..|.+.+.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567889999999999999999999998 6788888887663
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.32 E-value=4.9e-05 Score=69.64 Aligned_cols=41 Identities=22% Similarity=0.380 Sum_probs=33.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 198 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i 198 (377)
...++.++.|+|++||||||+.+.|+..+. .|.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 456678999999999999999999998764 35677777554
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.31 E-value=8.6e-05 Score=64.36 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCC---CCeEEECCEe
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFP 197 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~---~G~I~i~g~~ 197 (377)
.+++|+|+||||||||++.|.+.+++. -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 589999999999999999999876543 3667766544
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00038 Score=61.48 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=32.5
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
.+|.+|++||.-. +|+.....+.+.+.+. ..+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~----~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP----PEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC----CTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC----CCceEEEEEeCChHhC
Confidence 4688999999865 7887776666666543 2467788899887644
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00012 Score=62.97 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPS 187 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~ 187 (377)
.++|+|++|+|||||++.+++...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 58999999999999999999975443
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00015 Score=66.25 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=28.6
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCE
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF 196 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~ 196 (377)
.++++++.+++| +.|+||+|+|||||++.|++..... -+.+++.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~ 79 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGS 79 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSC
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHH
Confidence 455555555555 8999999999999999999876421 2445443
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=4.9e-05 Score=73.12 Aligned_cols=37 Identities=38% Similarity=0.445 Sum_probs=33.6
Q ss_pred CceeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHhhCC
Q 017091 148 PILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~--~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478889999999999 9999999999999999999864
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00018 Score=62.04 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00028 Score=63.70 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=27.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhh---CCCCCCCeEE
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLR---LYEPSDGQIY 192 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~g---l~~p~~G~I~ 192 (377)
=.+|.+++|+|++||||||+.+.|++ +..++.|.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~ 51 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY 51 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCee
Confidence 45688999999999999999999986 3334555543
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00031 Score=60.03 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997664
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00031 Score=59.44 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00027 Score=68.80 Aligned_cols=59 Identities=19% Similarity=0.390 Sum_probs=45.5
Q ss_pred CCCCEEEEeCcCCCCC---HHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH-------------HhcCeEEEEeCC
Q 017091 286 RDPAILLLDEATSALD---SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-------------KAVDRIVVIDDG 347 (377)
Q Consensus 286 ~~p~illlDEPts~LD---~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~-------------~~~d~v~~l~~G 347 (377)
..|.++++||.-.-++ +.....+.+.+++.++ .|..++++||+++.+ ..|+..+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk---~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK---YNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG---GTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh---hCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 3589999999999985 6677778888888764 488999999998754 236677777543
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0025 Score=52.88 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.+.-+.|.||+|+|||++.+.|.....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 456689999999999999999987654
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00034 Score=66.98 Aligned_cols=28 Identities=36% Similarity=0.589 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
..+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987653
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00037 Score=67.54 Aligned_cols=32 Identities=31% Similarity=0.493 Sum_probs=27.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 181 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~ 181 (377)
.+++..+++.+| +.+|+|||||||||++-+|.
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 357788888775 99999999999999999886
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00041 Score=60.41 Aligned_cols=32 Identities=38% Similarity=0.397 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEe
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 197 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 197 (377)
.+++|+|++||||||+.+.|+.. |-..++..+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 57999999999999999999985 666666543
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00038 Score=60.62 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999843
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00046 Score=59.36 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998744
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00081 Score=57.93 Aligned_cols=36 Identities=42% Similarity=0.575 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhh-C----CCCCCC----eEEECCEe
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR-L----YEPSDG----QIYIDGFP 197 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g-l----~~p~~G----~I~i~g~~ 197 (377)
.++|+|++|+|||||++.+.+ . +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 589999999999999976554 3 456655 55566643
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00013 Score=64.39 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPS 187 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~ 187 (377)
+++|.|++||||||+++.|...+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999887643
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00051 Score=60.92 Aligned_cols=32 Identities=44% Similarity=0.512 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 195 (377)
.+-+++|+|++||||||+.+.|..+ |-..++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 3468999999999999999999983 5445543
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0045 Score=59.41 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+...+.|.||+|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456689999999999999999998754
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0039 Score=60.29 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=24.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhh
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
-+++|+++.|.||+|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 478999999999999999999977664
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00087 Score=64.74 Aligned_cols=36 Identities=36% Similarity=0.508 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhh-----------CCCCCCCeEEECC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLR-----------LYEPSDGQIYIDG 195 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~g-----------l~~p~~G~I~i~g 195 (377)
|-.++|+|.+|+|||||++.|.+ -..|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45789999999999999999998 3467788887766
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00052 Score=57.79 Aligned_cols=19 Identities=58% Similarity=0.976 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLL 180 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l 180 (377)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00047 Score=59.51 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999998643
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00064 Score=63.50 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 195 (377)
.+..+.|+|||||||||+.+.|+.-++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999987543 35677765
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00013 Score=72.64 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCcCC-CCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH
Q 017091 273 GQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 273 Gq~QRv~iAral~~~p~illlDEPts-~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
.|.+....+...+.+++++|+..... ++... ...+.+.+++ .++.+|++.+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~------~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR------TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT------CCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH------cCCCEEEEEECccch
Confidence 46677777888888899888866554 34444 3445554432 367788888877654
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00056 Score=59.87 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.+.|+||||||||||++.|..-
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999988754
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00065 Score=58.40 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998644
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00059 Score=58.54 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl 183 (377)
=.++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0004 Score=59.59 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++..+.|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999998443
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00084 Score=58.52 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+|-+++|+|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999876
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.007 Score=60.00 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=28.6
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhh
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
+-|+.+.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 35665554689999999999999999999876664
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0007 Score=61.99 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++|+||+|||||||.+.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0008 Score=57.49 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00095 Score=56.78 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhh
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00098 Score=58.47 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+|.+++|+|+.||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998643
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00091 Score=57.82 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998644
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.001 Score=58.22 Aligned_cols=27 Identities=37% Similarity=0.525 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987654
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0015 Score=61.67 Aligned_cols=34 Identities=32% Similarity=0.307 Sum_probs=30.6
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhh
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
..+++..+.+ .|.-++|+|+||+||||+...+.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4788888888 789999999999999999999987
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0011 Score=58.17 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=24.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|.+++|+|+.||||||+.+.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999998643
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0075 Score=68.64 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=29.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeE
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I 191 (377)
+++|+.+.|.||+|+|||||+..++.......|.+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~V 763 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 763 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCe
Confidence 89999999999999999999999887654433443
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00092 Score=57.54 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEP 186 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p 186 (377)
.+++|+|++|||||||+..|++.+++
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999987653
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0013 Score=56.67 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999987543
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00045 Score=59.97 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=24.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++++.+++|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998654
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0012 Score=56.69 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987553
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0013 Score=57.35 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0011 Score=61.80 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeE
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I 191 (377)
..+.|+||+|+||||+++.|++...+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5799999999999999999999887766643
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0091 Score=57.25 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+..-+.|.||.|+|||||++.++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 445568999999999999999999754
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0013 Score=60.51 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=31.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEE
Q 017091 296 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIV 342 (377)
Q Consensus 296 Pts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~ 342 (377)
|||+.+......+.+.+.+.... ...+..+..|..+.++. ++++.
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~--~~~~~~~~~~~~~~~e~~~~~l~ 189 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEG--KVTTNPIIPRYDEDIEREIKHIS 189 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHT--CCCCCCCCCCCCHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhc--cccCCCCCcCCCHHHHHHHHHHH
Confidence 99999999988888888776542 23444566677776654 55543
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0012 Score=56.56 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=18.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998544
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0044 Score=52.10 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
+.-.++|+|++|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999874
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.041 Score=54.36 Aligned_cols=35 Identities=29% Similarity=0.501 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 193 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i 193 (377)
++.+++++|++||||||++.-|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45799999999999999999999877654335544
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0021 Score=57.06 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998654
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0019 Score=56.98 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999996543
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.002 Score=55.29 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
=.++|+|++|||||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999865
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0022 Score=54.24 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl 183 (377)
++++|+|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999764
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0038 Score=52.00 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0021 Score=57.42 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++.+++|+|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998644
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0022 Score=53.32 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0017 Score=56.49 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999754
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0025 Score=55.57 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+-+++|+|+.||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998644
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0022 Score=55.12 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0019 Score=54.67 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0024 Score=53.79 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998643
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0036 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0023 Score=56.49 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997544
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0026 Score=52.65 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998864
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0026 Score=52.56 Aligned_cols=23 Identities=43% Similarity=0.543 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999754
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0023 Score=52.76 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.002 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999998754
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.002 Score=55.24 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998643
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0026 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0025 Score=55.87 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl 183 (377)
-+++|+|+.||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999865
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0027 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0022 Score=57.01 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998654
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0026 Score=55.53 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
..+++|+|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998544
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0029 Score=52.80 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0025 Score=54.68 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
..+++|+|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998643
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0027 Score=52.94 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999998654
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0027 Score=58.21 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999874
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0026 Score=57.81 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
-+++|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998743
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0026 Score=58.85 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999964
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.003 Score=53.27 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999988743
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.003 Score=52.53 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998653
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.003 Score=52.41 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|++|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0028 Score=52.78 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0015 Score=61.19 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=19.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++-+++|.|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998744
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0032 Score=53.00 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0031 Score=57.78 Aligned_cols=25 Identities=36% Similarity=0.601 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
++.++.|+|++||||||+.+.|...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999865
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.003 Score=53.16 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0062 Score=53.25 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999988754
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0029 Score=53.28 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0028 Score=54.39 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl 183 (377)
-.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0036 Score=53.52 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.++|+|++|+|||||++.+.|-..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 579999999999999999998764
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0033 Score=56.97 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++-+++|+||+||||||+.+.|+.-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997543
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.003 Score=54.00 Aligned_cols=23 Identities=43% Similarity=0.525 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 78999999999999999998764
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0036 Score=51.97 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0037 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999863
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0038 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0038 Score=53.61 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0038 Score=53.11 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0039 Score=51.99 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl 183 (377)
=.++++|++|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999763
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.035 Score=53.64 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
++..+.|.||+|+|||+|++.++..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999865
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0034 Score=58.32 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhh
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~g 182 (377)
-+++|+|++||||||+.+.|..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.025 Score=56.73 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=23.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++..-+.|.||+|+|||++++.++...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4556679999999999999999998743
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0041 Score=51.60 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999975
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0033 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998753
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0043 Score=52.19 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.004 Score=52.30 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0044 Score=52.26 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++++|++|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0034 Score=57.87 Aligned_cols=23 Identities=43% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987653
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0045 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0041 Score=58.39 Aligned_cols=22 Identities=55% Similarity=0.690 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
+++|+|++|+|||||++.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0045 Score=52.35 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999864
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0045 Score=52.89 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0026 Score=53.96 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhh
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
.=.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999874
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0044 Score=55.23 Aligned_cols=23 Identities=43% Similarity=0.544 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997544
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0022 Score=63.82 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=34.7
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 193 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i 193 (377)
.+++.+ +.+-+|+..+|+|++|+|||||++.|++-.....|.|.+
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 355555 678899999999999999999999998765544444443
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0049 Score=52.00 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.016 Score=57.96 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=53.4
Q ss_pred CCCChHHHHHHHHHHHHc--C---------------CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 017091 268 DLLSGGQKQRIAIARAIL--R---------------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 330 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral~--~---------------~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH 330 (377)
..+||||+|-.-+|.+.. + .=.+++|||+ +-+|.+..+..+++++++ |.-+|++|=
T Consensus 378 g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l------glQliiatP 450 (483)
T 3euj_A 378 SALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL------DMQLLIAAP 450 (483)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT------TCEEEEEES
T ss_pred CCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc------CCEEEEECc
Confidence 458999999654444332 2 1257999999 999999999999999987 777888988
Q ss_pred CchhHHhcCeEEEEe
Q 017091 331 RLSTIKAVDRIVVID 345 (377)
Q Consensus 331 ~l~~~~~~d~v~~l~ 345 (377)
+ .....+|.++.+-
T Consensus 451 ~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 451 E-NISPERGTTYKLV 464 (483)
T ss_dssp S-SCCCSSSEEEECC
T ss_pred c-hhhhccCceEEEE
Confidence 7 3334588888774
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0042 Score=60.09 Aligned_cols=22 Identities=55% Similarity=0.715 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0057 Score=51.71 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.+..+.|+||.|+|||||++.++..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999987653
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0048 Score=52.40 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0052 Score=53.91 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0049 Score=57.93 Aligned_cols=22 Identities=55% Similarity=0.625 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
+++|+|+.|+|||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999985
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0054 Score=53.09 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.005 Score=54.57 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+|-++.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998654
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0055 Score=52.45 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0055 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999864
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0054 Score=52.97 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0049 Score=54.39 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998644
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0052 Score=52.42 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999875
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.005 Score=55.93 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|||||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999753
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0048 Score=55.61 Aligned_cols=29 Identities=17% Similarity=0.452 Sum_probs=22.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
..+|.++.|.|++||||||+++.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999987664
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0057 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0054 Score=52.77 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0056 Score=52.10 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.=.++++|++|+|||||++.+.+-
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999864
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0055 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6899999999999999999873
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=95.68 E-value=0.006 Score=51.57 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0083 Score=52.92 Aligned_cols=35 Identities=31% Similarity=0.244 Sum_probs=28.3
Q ss_pred CceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 148 ~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
..++..-+.+ .|..+.|+||+|||||||...|+.-
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3566666554 5789999999999999999988754
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0061 Score=52.13 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.006 Score=52.77 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0061 Score=56.06 Aligned_cols=30 Identities=40% Similarity=0.464 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCe
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 190 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~ 190 (377)
-.++++|.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 489999999999999999999876654443
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0033 Score=55.32 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
-.++|+|++|+|||||++.|.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999864
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0059 Score=52.95 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 68999999999999999999754
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.006 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998643
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0066 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.005 Score=54.33 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0066 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0072 Score=57.64 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
++.++.|+||+|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999997663
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0062 Score=51.49 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999984
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.006 Score=58.26 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999987653
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0068 Score=53.99 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=24.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
-+|.+++|.|++||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987664
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0063 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|||||||++.|++-.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999988753
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0067 Score=55.52 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|||||||++.+.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0065 Score=56.39 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhh
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0077 Score=53.93 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998654
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0064 Score=56.14 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0062 Score=52.44 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0066 Score=53.91 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0072 Score=51.91 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0073 Score=51.72 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0068 Score=51.73 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhh
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~g 182 (377)
=.++|+|+.|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999985
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0075 Score=51.98 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0074 Score=54.65 Aligned_cols=27 Identities=30% Similarity=0.577 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
+|.+++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0076 Score=51.46 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.082 Score=61.12 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
+++|+++.|.||+|+|||||+..++.-..
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a 408 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999887765443
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0076 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998753
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0069 Score=52.56 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0068 Score=52.01 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0068 Score=52.60 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999854
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.14 Score=51.25 Aligned_cols=34 Identities=29% Similarity=0.234 Sum_probs=27.5
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhh
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
.|+.+.--+++|+++.|.|++|+|||||+.-++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 4555543589999999999999999999866653
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0076 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl 183 (377)
=.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=95.48 E-value=0.009 Score=50.36 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl 183 (377)
=.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0053 Score=52.60 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998654
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0073 Score=59.31 Aligned_cols=27 Identities=44% Similarity=0.578 Sum_probs=23.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
-.+..++.|+|++||||||+.+.|+.-
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 345789999999999999999998763
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0061 Score=51.39 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0073 Score=52.64 Aligned_cols=23 Identities=17% Similarity=0.288 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999743
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0064 Score=51.70 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.008 Score=56.78 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+.+++|+||+|||||||...|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0079 Score=51.96 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.++|+|++|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999999988543
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0071 Score=56.45 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|||||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999874
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0086 Score=51.34 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6899999999999999888754
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0073 Score=51.01 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999987654
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0079 Score=52.67 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999975
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0091 Score=53.16 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
+|.++.+-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987664
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0086 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.012 Score=51.34 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998654
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.009 Score=51.55 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999854
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0093 Score=56.18 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=24.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhh
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
-+++|+++.|.||+|||||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999988774
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0084 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.009 Score=56.65 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
..++|+||+|||||||.+.|+.-+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999765
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.01 Score=53.60 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+..-+.|.||+|+||||+++.++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999998743
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0088 Score=51.86 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0086 Score=54.70 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.|.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999843
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.01 Score=53.34 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.+|.++++.|++||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999999987654
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.006 Score=51.69 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=9.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988753
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.01 Score=53.03 Aligned_cols=29 Identities=31% Similarity=0.567 Sum_probs=26.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 186 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p 186 (377)
.+|.++.+-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999987764
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0088 Score=54.86 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++++|++|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999754
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0095 Score=53.56 Aligned_cols=26 Identities=42% Similarity=0.576 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
|.+++|.|+.||||||+.+.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999997653
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.043 Score=57.95 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+.+.||+|+|||++.+.|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0081 Score=53.70 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=24.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+++..++.|+||.||||+|..+.|+--+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566789999999999999999998544
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0085 Score=55.34 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.|.|-.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999865
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.013 Score=52.21 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=37.3
Q ss_pred cCCCCEEEEeCcCC----CCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch----------hHHh-cCeEEEEe
Q 017091 285 LRDPAILLLDEATS----ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS----------TIKA-VDRIVVID 345 (377)
Q Consensus 285 ~~~p~illlDEPts----~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~----------~~~~-~d~v~~l~ 345 (377)
-.+|+++++|--+. .-|.....++...|+.+.++ .+.++++++|-.. .... ||-|+.|+
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~--~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE--MGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH--HCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHH--cCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35899999996542 11344445556666666543 4889999988432 1233 89888885
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.01 Score=50.90 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.016 Score=49.92 Aligned_cols=33 Identities=24% Similarity=0.179 Sum_probs=25.6
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhh
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++..-+. -.|.-+.|.|+||+|||||...+..
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44444444 4588999999999999999987764
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0088 Score=51.59 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhh
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~g 182 (377)
=.++|+|+.|+|||||++.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999964
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.003 Score=57.58 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=24.6
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 150 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
+.++++..+.| +.|.||+|+|||||++.++..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 33444444555 789999999999999999974
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.012 Score=52.22 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.011 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++-+++-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999998888653
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.1 Score=59.45 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=27.7
Q ss_pred ceeeeeE--EEeCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 149 ILNHVCL--TIEANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 149 vL~~isl--~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
-|+.+-= -+++|+++.|.||+|+|||||...++.-
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4555521 3899999999999999999998776643
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=95.01 E-value=0.0077 Score=55.00 Aligned_cols=27 Identities=41% Similarity=0.545 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++.+++|.|+.||||||+.+.|...+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467799999999999999999998766
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.013 Score=50.95 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999999864
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.0058 Score=53.59 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998854
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.013 Score=51.07 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|++|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999988875
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.014 Score=55.05 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
...++|+||+|||||||...|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998654
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=94.93 E-value=0.0038 Score=61.69 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEe
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 197 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~ 197 (377)
.+++++|++|+||||++..|++.+.....+|.+-..|
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 5899999999999999999999876444456554433
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.015 Score=51.39 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.015 Score=51.12 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.0088 Score=51.05 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhh
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~g 182 (377)
=.++++|++|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3699999999999999999854
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=94.83 E-value=0.0063 Score=52.53 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=4.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988764
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.014 Score=50.49 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=34.4
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCch-----------hHHhcCeEEEEe
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-----------TIKAVDRIVVID 345 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~-----------~~~~~d~v~~l~ 345 (377)
+++++++||.-- +|+. +.+.+..+.+ .|..|++..++.+ .+..||.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~~----~~~~l~~l~~---~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPS----LFEVVKDLLD---RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCTT----HHHHHHHHHH---TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHHH---CCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 678999999854 6543 3445555543 2778888888554 334589987775
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.016 Score=50.38 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999854
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.017 Score=56.43 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+++|+||+|||||||.+.|+.-+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998654
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.019 Score=50.78 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++.|+||.||||+|..+.|+.-+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.48 E-value=0.023 Score=52.74 Aligned_cols=29 Identities=31% Similarity=0.438 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDG 189 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G 189 (377)
-.++++|.+|+|||||++.|.|-.....|
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred ceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 46899999999999999999987644333
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.02 Score=54.46 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=29.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 195 (377)
.+|..+.|.||+|+|||||++.++.........+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 45678999999999999999999987754334444444
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.022 Score=52.84 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+..+.|.||+|+|||||++.++..+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999888765
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.021 Score=49.40 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=30.7
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchh
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 334 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~ 334 (377)
.+|.++++||. ..+++.....+.+.+.+. ..+..+|++|++...
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~----~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY----SKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT----TTTEEEEEEESCGGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc----CCCCeEEEEeCChhh
Confidence 36899999996 456777777777776654 235667777877654
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.023 Score=50.10 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999987664
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.021 Score=53.46 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+-.++|+|++|+|||||++.+.+-.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3478999999999999999987653
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=94.24 E-value=0.017 Score=55.52 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=22.8
Q ss_pred CCCChHHHHHHHHHHHH---cC--CCCEEEEeCcC
Q 017091 268 DLLSGGQKQRIAIARAI---LR--DPAILLLDEAT 297 (377)
Q Consensus 268 ~~LSgGq~QRv~iAral---~~--~p~illlDEPt 297 (377)
..+|+||+||.+++|+| ++ +++++++|||+
T Consensus 295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 45899999999999999 76 89999999997
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.026 Score=53.26 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+..-+.|.||.|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999865
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.024 Score=54.74 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
++..++++|++|+|||||++.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5678999999999999999999986
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.14 E-value=3.7e-05 Score=71.07 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=47.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCE--EEEeCcCCCCCHHH---------HHHHHHHHHHhhccCCCCeEEEEEecCch
Q 017091 269 LLSGGQKQRIAIARAILRDPAI--LLLDEATSALDSES---------EHYVKGVLHALRNDCKTKRTVIVIAHRLS 333 (377)
Q Consensus 269 ~LSgGq~QRv~iAral~~~p~i--lllDEPts~LD~~~---------~~~i~~~l~~l~~~~~~g~tvi~itH~l~ 333 (377)
.+|+| ||++++++++.+|++ +|+||+|+++|... +....+.+..+. +|+|.+.+.|++.
T Consensus 172 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~----~g~t~~~~a~r~~ 241 (261)
T 2eyu_A 172 PKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYK----QGLITLEDAMEAS 241 (261)
T ss_dssp CCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHH----TTSSCHHHHHHHC
T ss_pred ecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHH----cCCCCHHHHHHHh
Confidence 57889 999999999999999 99999999999863 234555666653 4888888888765
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.025 Score=54.20 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
-+++|+|+.|+|||||++.|++.+.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999987653
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.028 Score=53.21 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=25.0
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhh
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
--+++|..+.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3678899999999999999999998875
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=94.05 E-value=0.019 Score=50.39 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCCCEEEEeCcCC-----CCCHHHHHHHHHHHHHh
Q 017091 277 RIAIARAILRDPAILLLDEATS-----ALDSESEHYVKGVLHAL 315 (377)
Q Consensus 277 Rv~iAral~~~p~illlDEPts-----~LD~~~~~~i~~~l~~l 315 (377)
.-.|++.+..+|.+-..++|+. .+|+...+++.+.++..
T Consensus 166 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
T 3gj0_A 166 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVA 209 (221)
T ss_dssp HHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhh
Confidence 3466777777777777766655 56776666666665554
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.023 Score=56.03 Aligned_cols=22 Identities=50% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999884
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.044 Score=49.72 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEP 186 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p 186 (377)
.+..+.|.||+|+|||+|++.|......
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 3567889999999999999999987643
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.027 Score=51.41 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.+...+.|.||+|+|||||++.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457889999999999999999875
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=93.94 E-value=0.027 Score=54.95 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++++|||||++.|.|--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999853
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.016 Score=57.48 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=28.3
Q ss_pred eeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHhhCCCCC
Q 017091 151 NHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPS 187 (377)
Q Consensus 151 ~~isl~i~~Ge~--~~ivG~nGsGKSTLl~~l~gl~~p~ 187 (377)
+.+.-.++.|.. +.|.||+|+|||||++.|+......
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 344444555554 8999999999999999999887543
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.034 Score=52.15 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+..+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6889999999999999999998654
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=93.91 E-value=0.028 Score=53.69 Aligned_cols=25 Identities=32% Similarity=0.592 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+..+.|.||+|+||||+.+.|+..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999999876
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.01 Score=51.43 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 689999999999999988764
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=93.87 E-value=0.032 Score=51.84 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
...+.|.||+|+|||+|.+.|+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467888999999999999999755
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.025 Score=54.51 Aligned_cols=26 Identities=35% Similarity=0.638 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++..++++|++|+|||||++.|.|-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 57789999999999999999999863
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=93.82 E-value=0.036 Score=52.14 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.+..-+.|.||+|+|||+|++.++..
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34567899999999999999999875
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.035 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
-.+||+|+.||||||+.+.|+.-+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999997544
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.031 Score=51.50 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
..+.|.||+|+||||+++.++..+
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999766
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=93.80 E-value=0.37 Score=43.28 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=36.7
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecC-----------chhHHhcCeEEEEe
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR-----------LSTIKAVDRIVVID 345 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~-----------l~~~~~~d~v~~l~ 345 (377)
.+.+++++||.--..| ..++.+.+.+ .|+.||+..+| ..++..||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~------~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN------AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH------TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh------CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999988765 3344444443 37899999999 23356699998874
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=93.79 E-value=0.021 Score=54.63 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=93.76 E-value=0.048 Score=53.70 Aligned_cols=22 Identities=45% Similarity=0.584 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|.+++|||||++.+.|-
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~ 24 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKK 24 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999975
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 377 | ||||
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-95 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 8e-95 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-90 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-85 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-82 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-75 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-55 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 9e-51 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-47 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-46 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-45 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 9e-45 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-43 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-42 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-41 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-40 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-39 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 9e-38 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 5e-35 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-34 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 6e-26 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-11 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-11 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 1e-05 | |
| d1yj5a2 | 172 | c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p | 3e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 7e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.001 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 0.002 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 0.003 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 0.004 |
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 283 bits (726), Expect = 1e-95
Identities = 114/252 (45%), Positives = 161/252 (63%), Gaps = 7/252 (2%)
Query: 124 KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 183
+ R G ++F N++F YP R VP L ++ L I A + VA+VG SGSGKST +L+ R
Sbjct: 6 VIDRATGDLEFRNVTFTYPGRE-VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 64
Query: 184 YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEW 243
Y+ +G I +DG L + + LR ++ V Q L + +NI Y ++ E IE
Sbjct: 65 YDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEE 124
Query: 244 AAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD 301
AA+ AY +FI + G +T++ ++ LLSGGQ+QRIAIARA+LRD IL+LDEATSALD
Sbjct: 125 AARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 184
Query: 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 361
+ESE ++ L L+ + RT +VIAHRLSTI+ D IVV++DG I+E G H+ELL +
Sbjct: 185 TESERAIQAALDELQKN----RTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 240
Query: 362 GRLYAKLVKRQT 373
+YA+L K Q
Sbjct: 241 HGVYAQLHKMQF 252
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 281 bits (721), Expect = 8e-95
Identities = 113/250 (45%), Positives = 152/250 (60%), Gaps = 8/250 (3%)
Query: 125 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 184
++ G + ++SF Y PIL + L+IE E VA VG+SG GKST +NL+ R Y
Sbjct: 10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 185 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWA 244
+ + GQI IDG + D LR +IG V Q+ L +K NI+ G P +E++ A
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP-TATDEEVVEA 127
Query: 245 AKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
AK A H+FI++LP GY+T V + LSGGQKQR++IAR L +P IL+LDEATSALD
Sbjct: 128 AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 187
Query: 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 362
ESE ++ L L D RT +++AHRLSTI D+IVVI++G I+E G H EL+ K
Sbjct: 188 ESESIIQEALDVLSKD----RTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ 243
Query: 363 RLYAKLVKRQ 372
Y L Q
Sbjct: 244 GAYEHLYSIQ 253
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 269 bits (690), Expect = 3e-90
Identities = 102/250 (40%), Positives = 154/250 (61%), Gaps = 4/250 (1%)
Query: 123 VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 182
+ L G VQF ++SF YP+RP V +L + T+ EV A+VG +GSGKST LL
Sbjct: 3 LTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 62
Query: 183 LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIE 242
LY+P+ GQ+ +DG PL + R+L ++ VGQEPQ+ ++ NI YG + E+I
Sbjct: 63 LYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEIT 122
Query: 243 WAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSAL 300
AA ++ H FI LP GY+T VD+ LSGGQ+Q +A+ARA++R P +L+LD+ATSAL
Sbjct: 123 AAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSAL 182
Query: 301 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 360
D+ S+ V+ +L+ + R+V++I LS ++ D I+ ++ G I E G H +L+
Sbjct: 183 DANSQLQVEQLLYESPE--RYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME 240
Query: 361 KGRLYAKLVK 370
K Y +V+
Sbjct: 241 KKGCYWAMVQ 250
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 257 bits (659), Expect = 1e-85
Identities = 98/243 (40%), Positives = 140/243 (57%), Gaps = 8/243 (3%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
+ ++ F Y IL + + N ++A G SG GKST +LL R Y+P+ G+I
Sbjct: 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 251
IDG P+ ++ + R +IGFV Q+ ++ I+ N+ YG D +ED+ A+
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 252 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309
F+ ++P T V + +SGGQ+QR+AIARA LR+P IL+LDEAT++LDSESE V+
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 310 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 369
L +L RT +VIAHRLSTI D+I I+ G+I G H EL+ LYAK V
Sbjct: 180 KALDSLMKG----RTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235
Query: 370 KRQ 372
Q
Sbjct: 236 SEQ 238
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 249 bits (638), Expect = 2e-82
Identities = 113/246 (45%), Positives = 152/246 (61%), Gaps = 9/246 (3%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
+ F NI F Y + IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ+
Sbjct: 2 ITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 251
IDG L D WLR ++G V Q+ LL I NI + E + +AAK A H
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLA-NPGMSVEKVIYAAKLAGAH 119
Query: 252 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 309
+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 310 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL-HKGRLYAKL 368
+H + RTVI+IAHRLST+K DRI+V++ G+I+E G H ELL LY+ L
Sbjct: 180 RNMHKICKG----RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
Query: 369 VKRQTE 374
+ Q++
Sbjct: 236 YQLQSD 241
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 233 bits (596), Expect = 1e-75
Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 21/241 (8%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
N+SF + P+L ++ L IE E++AI G +GSGK++ + L+L E S+G I G
Sbjct: 38 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 97
Query: 196 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 255
++ F Q ++ IK NI++G D + K + + I
Sbjct: 98 -------------RVSFCSQFSWIMPGTIKENIIFGVSYD--EYRYKSVVKACQLQQDIT 142
Query: 256 SLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 313
T++ + LSGGQ+ RI++ARA+ +D + LLD LD +E V
Sbjct: 143 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQ---VFE 199
Query: 314 ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH-KGRLYAKLVKRQ 372
+ +T I++ ++ ++ D+I+++ G G +EL + +KL+
Sbjct: 200 SCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYD 259
Query: 373 T 373
T
Sbjct: 260 T 260
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 178 bits (453), Expect = 6e-55
Identities = 72/229 (31%), Positives = 120/229 (52%), Gaps = 10/229 (4%)
Query: 132 VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 190
++ N++ Y + L +V L I+ E V+I+G SGSGKST +N++ L +P++G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 191 IYIDGFPLTDLD----IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGC-PKDVKNEDIEWA 244
+YID DLD + R+KIGFV Q+ L+ + N+ K E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 245 AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 304
K+A + L + + LSGGQ+QR+AIARA+ +P I+L D+ T ALDS++
Sbjct: 122 RKRALECLKMAELEERFANHKPNQ-LSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 305 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 353
+ +L L + +TV+V+ H ++ + +RI+ + DG +
Sbjct: 181 GEKIMQLLKKLNE--EDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 168 bits (426), Expect = 9e-51
Identities = 69/240 (28%), Positives = 123/240 (51%), Gaps = 23/240 (9%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
M V+ N++ + + +N + LTI+ E + ++G SG GK+T + ++ L EP++
Sbjct: 4 MVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE 60
Query: 189 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIE 242
G+IY +T L + I V Q + M + NI + PKD ++ +
Sbjct: 61 GRIYFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR 118
Query: 243 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
WAA+ + E + P LSGGQ+QR+A+ARAI+ +P +LL+DE S LD+
Sbjct: 119 WAAELLQIEELLNRYPAQ---------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 169
Query: 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 361
+ ++ + L+ K K T I + H + DRI V++ G+++++G+ E+ +
Sbjct: 170 KLRVAMRAEIKKLQ--QKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 158 bits (401), Expect = 4e-47
Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 22/241 (9%)
Query: 132 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 190
++ NI+ + T+ LN+V L + A ++ ++G SG+GKST + + L P++G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 191 IYIDGFPLTDL---DIRWLREKIGFVGQEPQLL-QMDIKSNIM-----YGCPKDVKNEDI 241
+ +DG LT L ++ R +IG + Q LL + N+ PKD +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 242 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 301
+ + S P LSGGQKQR+AIARA+ +P +LL DEATSALD
Sbjct: 122 TELLSLVGLGDKHDSYP---------SNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
Query: 302 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 360
+ + +L + T+++I H + +K + D + VI +G +IE +E+
Sbjct: 173 PATTRSILELLKDINRRLGL--TILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 361 K 361
Sbjct: 231 H 231
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 157 bits (399), Expect = 1e-46
Identities = 68/251 (27%), Positives = 115/251 (45%), Gaps = 35/251 (13%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
+ +++ Y +L V L A +V++I+G SGSGKSTF+ + L +PS+G I
Sbjct: 3 LHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 192 YIDGFPLTDL-------------DIRWLREKIGFVGQEPQLL-QMDIKSNIMY------G 231
++G + + +R LR ++ V Q L M + N+M G
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 232 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 291
K E + + E + LSGGQ+QR++IARA+ +P +L
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPVH--------LSGGQQQRVSIARALAMEPDVL 171
Query: 292 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 350
L DE TSALD E V VL ++ + +T++V+ H + + V ++ + G+I
Sbjct: 172 LFDEPTSALDPEL---VGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228
Query: 351 EVGNHAELLHK 361
E G+ ++
Sbjct: 229 EEGDPEQVFGN 239
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 153 bits (387), Expect = 4e-45
Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 22/228 (9%)
Query: 148 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 207
L + + A E++ +VG +G+GKST + + + G I G PL L
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLA 71
Query: 208 EKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 266
++ Q+ + + + E + A + + +
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRST-------- 123
Query: 267 DDLLSGGQKQRIAIARAILR-------DPAILLLDEATSALDSESEHYVKGVLHALRNDC 319
+ LSGG+ QR+ +A +L+ +LLLDE ++LD + + +L AL C
Sbjct: 124 -NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL---C 179
Query: 320 KTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYA 366
+ +++ +H L+ R ++ G+++ G E+L L
Sbjct: 180 QQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQ 227
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 152 bits (385), Expect = 9e-45
Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 17/240 (7%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
M V+ V++ + V + + L ++ E + ++G SG GK+T + ++ L EPS
Sbjct: 1 MAGVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR 57
Query: 189 GQIYIDGFPLTDLD----IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWA 244
GQIYI + D + + I V Q L + + P ++ +
Sbjct: 58 GQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA-FPLKLRKVPRQEI 116
Query: 245 AKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDS 302
++ + L G L++ LSGGQ+QR+A+ RAI+R P + L+DE S LD+
Sbjct: 117 DQRV---REVAEL-LGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA 172
Query: 303 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 361
+ ++ L L+ T I + H + DRI V++ G + +VG+ E+ K
Sbjct: 173 KLRVRMRAELKKLQRQLGV--TTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 148 bits (374), Expect = 3e-43
Identities = 66/237 (27%), Positives = 108/237 (45%), Gaps = 23/237 (9%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
VQ N++ + V + + L I E V VG SG GKST + ++ L + G +
Sbjct: 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAA 245
+I + D +G V Q L + + N+ + G K+V N+ + A
Sbjct: 58 FIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 246 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 305
+ + + P LSGGQ+QR+AI R ++ +P++ LLDE S LD+
Sbjct: 116 EVLQLAHLLDRKP---------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 166
Query: 306 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 361
++ + L + RT+I + H + D+IVV+D GR+ +VG EL H
Sbjct: 167 VQMRIEISRLH--KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 147 bits (372), Expect = 1e-42
Identities = 56/247 (22%), Positives = 111/247 (44%), Gaps = 22/247 (8%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
M ++ NI ++ L+ V +++ +V I+G +GSGKST +N++ + +
Sbjct: 2 MEILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE 58
Query: 189 GQIYIDGFPLTDLDIRWL-REKIGFVGQEP-QLLQMDIKSNIMYGCPKDVKN-------- 238
G++Y + +T+ + L I Q P L +M + N++ G ++
Sbjct: 59 GRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYK 118
Query: 239 ---EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDE 295
E ++A+ L L Y+ + LSGGQ + + I RA++ +P ++++DE
Sbjct: 119 KWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIVMDE 176
Query: 296 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 354
+ + H + + L+ T ++I HRL + D + V+ +G+II G
Sbjct: 177 PIAGVAPGLAHDIFNHVLELK---AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233
Query: 355 HAELLHK 361
E +
Sbjct: 234 GEEEIKN 240
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 143 bits (363), Expect = 2e-41
Identities = 59/254 (23%), Positives = 114/254 (44%), Gaps = 29/254 (11%)
Query: 130 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 189
G V ++ + IL + IE E+ ++G +G+GK+T + ++ L +PS G
Sbjct: 1 GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 190 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNI-----MYGCPKDVKNEDIEW 243
+ + G + +R+ I ++ +E + M + Y E +E
Sbjct: 58 IVTVFGKN-VVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 244 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 303
A + A + E I S G +++ IARA++ +P + +LDE TS LD
Sbjct: 117 ATEIAGLGEKIKDRVST---------YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 167
Query: 304 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKG 362
+ V+ +L + T++V +H + ++ + DRI +I +G I+E G EL +
Sbjct: 168 NAREVRKILKQASQEG---LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 224
Query: 363 R------LYAKLVK 370
+ ++ ++VK
Sbjct: 225 KAQNIEEVFEEVVK 238
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 141 bits (356), Expect = 2e-40
Identities = 47/230 (20%), Positives = 99/230 (43%), Gaps = 17/230 (7%)
Query: 136 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195
++ +Y + + + + L + ++V ++G +G+GK+T ++ + L G+I +G
Sbjct: 11 SLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67
Query: 196 FPLTDLD--IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF 253
+T+ + ++ + N+M G E I+ E+
Sbjct: 68 QDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL------EW 121
Query: 254 ILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 311
I SL + + LSGG++Q +AI RA++ P +L++DE + L V V
Sbjct: 122 IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEV 181
Query: 312 LHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 360
+ + + T++++ V V++ G+I+ G +ELL
Sbjct: 182 IQKIN---QEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 138 bits (348), Expect = 2e-39
Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 22/243 (9%)
Query: 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 188
M + N+S + + V L++V + IE E I+G SG+GK+TF+ ++ L PS
Sbjct: 1 MVRIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59
Query: 189 GQIYIDGFPLTDLDIRWLRE---KIGFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNE 239
G++Y D + + KIG V Q L + NI + K+ +
Sbjct: 60 GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK 119
Query: 240 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 299
+E AK +H + P LSG Q+QR+A+ARA+++DP++LLLDE S
Sbjct: 120 RVEEVAKILDIHHVLNHFPRE---------LSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 300 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 358
LD+ + ++ ++ + T++V++H + I A+ DR+ V+ G++++VG +L
Sbjct: 171 LDARMRDSARALVKEVQ--SRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Query: 359 LHK 361
Sbjct: 229 YDN 231
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 133 bits (336), Expect = 9e-38
Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 21/234 (8%)
Query: 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191
++ ++S + + L+++ L +E+ E I+G +G+GK+ F+ L+ + P G+I
Sbjct: 2 IEIESLSRKWKNF----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 192 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGC--PKDVKNEDIEWAAKQA 248
+DG +TDL + I FV Q L M++K N+ +G K + + A+
Sbjct: 58 LLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 249 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 308
+ + P LSGG++QR+A+ARA++ +P ILLLDE SALD ++
Sbjct: 116 KIEHLLDRNPLT---------LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA 166
Query: 309 KGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 361
+ +L L K TV+ I H + + + DRI V+ DG++I+VG E+ K
Sbjct: 167 REMLSVLHKKNKL--TVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 126 bits (318), Expect = 5e-35
Identities = 59/221 (26%), Positives = 110/221 (49%), Gaps = 17/221 (7%)
Query: 152 HVCLTIEAN-EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210
+ + E + ++G +G+GKS F+ L+ + +P G++ ++G +T L R I
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGI 72
Query: 211 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-- 267
GFV Q+ L + + NI YG +V+ + + ++ ++ G L+D
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLR-NVERVERDRRVRE-------MAEKLGIAHLLDRKP 124
Query: 268 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 327
LSGG++QR+A+ARA++ P +LLLDE SA+D +++ + L ++ + ++
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ--REFDVPILH 182
Query: 328 IAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYAK 367
+ H L + D + V+ +GRI+E G EL
Sbjct: 183 VTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVA 223
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 123 bits (311), Expect = 2e-34
Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 28/216 (12%)
Query: 133 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 192
+ ++S Y P+L + +TIE VV G +G GK+T + + +P G+I
Sbjct: 4 EIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 193 IDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYG---CPKDVKNEDIEWAAKQA 248
+G I ++ KI F+ +E + + + ++ + V +I A +
Sbjct: 60 YNGV-----PITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 114
Query: 249 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 308
V + L LS G +R+ +A +L + I +LD+ A+D +S+H V
Sbjct: 115 EVLDLKKKLGE----------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 164
Query: 309 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 344
+ + + +I LS D +
Sbjct: 165 LKSILEILKEKGI--VIISSREELSY---CDVNENL 195
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 100 bits (250), Expect = 6e-26
Identities = 26/201 (12%), Positives = 46/201 (22%), Gaps = 34/201 (16%)
Query: 163 VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM 222
+ I G G GK+T V ++ + + + R I G++
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 223 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282
S + G Y V A
Sbjct: 63 FFTSKKLVGS----------------------------YGVNVQYFEELAIPILERAYRE 94
Query: 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 342
A ++++DE K + V+ V I
Sbjct: 95 AKKDRRKVIIIDEIGKMEL----FSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIR 150
Query: 343 VIDDGRIIEVG--NHAELLHK 361
+ +IE+ N +L
Sbjct: 151 RLPGAVLIELTPENRDVILED 171
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 1e-05
Identities = 25/177 (14%), Positives = 45/177 (25%), Gaps = 13/177 (7%)
Query: 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 221
V + G G GK+T ++ + + S + R + + + L
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62
Query: 222 MDIKSNI-----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQ 274
V E A S G V D+ +
Sbjct: 63 RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVL-RNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 275 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR 331
+ I R L P ++L ++ +RN K + +R
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPL-----ALVEEIRNRKDVKVFNVTKENR 173
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.1 bits (90), Expect = 3e-04
Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Query: 161 EVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ 218
EVV VG G+GKSTF+ L Y + LR+ V
Sbjct: 15 EVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTN 74
Query: 219 LLQMDIK 225
Sbjct: 75 PDVPSRA 81
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.9 bits (89), Expect = 7e-04
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 271 SGGQKQRIAI----ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 326
SGG+K A+ A + +LDE +ALD V+ + +R I
Sbjct: 334 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALD---ITNVQRIAAYIRRHRNPDLQFI 390
Query: 327 VIAHRLSTIKAVDRIVVI 344
VI+ + + + D +V +
Sbjct: 391 VISLKNTMFEKSDALVGV 408
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 37.3 bits (85), Expect = 0.001
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 205
++A SG+GK+T + L+ + + D+D+
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDK 47
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 37.6 bits (85), Expect = 0.002
Identities = 19/73 (26%), Positives = 36/73 (49%)
Query: 39 WNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ 98
+ T+ ++ + +G + G ++ L +V Y E L R+V + ++L Q
Sbjct: 247 SFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQ 306
Query: 99 SIGATEKVFQLID 111
S + ++VFQLID
Sbjct: 307 SFASMDRVFQLID 319
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 36.8 bits (83), Expect = 0.003
Identities = 12/113 (10%), Positives = 39/113 (34%)
Query: 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMS 61
+ V ++G +E E R+ K+ ++ A + + + +
Sbjct: 205 HKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFP 264
Query: 62 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 114
++ ++ +T L+ + + + + + A + +F ++D
Sbjct: 265 SVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 35.4 bits (80), Expect = 0.004
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 197
++ + G S +GKS V L + +D
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLI 40
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 377 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.88 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.81 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.53 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.38 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.37 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.24 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.23 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 99.17 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.34 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.2 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.79 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.7 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.61 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.6 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.59 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.56 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.54 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.47 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.42 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.34 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.34 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.32 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.29 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.27 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.25 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.22 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.21 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.2 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.19 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.16 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.13 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.1 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.08 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.06 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.01 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.98 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.96 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.93 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.88 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.88 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.87 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.86 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.77 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.77 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.74 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.73 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.71 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.69 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.69 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.68 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.67 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.66 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.65 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.65 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.64 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.63 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.62 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.61 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.61 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.6 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.6 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.57 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.56 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.51 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.51 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.5 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.49 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.48 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.48 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.48 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.47 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.42 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.35 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.34 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.33 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.32 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.31 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.28 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.27 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.23 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.23 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.22 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.19 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.18 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.17 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.16 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.15 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.12 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 96.08 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.06 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.01 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.01 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.0 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.97 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.92 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.89 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.86 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.86 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.86 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.84 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.81 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.79 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.79 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.78 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.78 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.77 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.76 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.76 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.74 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.7 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.7 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.67 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.66 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.65 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.65 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 95.64 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.64 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.62 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.61 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.61 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.59 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.55 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.54 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.51 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.5 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.45 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.45 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.45 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.44 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.44 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.43 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.42 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.42 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.4 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 95.33 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.27 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 95.26 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.26 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.26 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.23 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.22 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.22 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 95.21 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 95.21 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.16 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 95.13 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.13 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.12 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 95.11 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 95.06 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 95.04 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.03 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 94.98 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.98 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.96 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.96 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.96 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 94.94 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 94.92 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 94.92 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.89 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.84 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 94.84 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.83 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 94.79 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.78 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 94.78 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.75 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 94.71 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.64 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 94.61 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 94.6 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 94.58 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 94.57 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 94.57 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.57 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.54 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.49 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 94.47 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.42 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.41 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 94.39 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 94.17 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.14 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.1 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 94.06 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.01 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.0 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.97 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.8 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.78 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 93.77 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.73 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.71 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 93.61 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.59 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 93.07 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 93.0 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.92 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.82 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 92.71 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.62 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 92.13 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.05 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.05 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 91.89 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.88 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 91.78 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 91.75 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 91.46 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 91.37 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 91.1 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 90.95 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.26 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.99 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 89.95 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 89.85 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 89.66 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 89.64 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 89.53 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 89.41 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 88.59 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 88.26 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 88.24 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 87.73 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.82 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 86.81 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.8 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 86.59 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 85.83 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 85.44 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 85.22 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 84.82 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.58 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 84.5 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 84.1 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 84.1 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 83.9 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 83.29 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 83.2 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 83.09 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 82.99 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 82.94 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 82.7 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 82.53 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 82.3 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 81.04 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 80.29 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-69 Score=496.78 Aligned_cols=237 Identities=48% Similarity=0.732 Sum_probs=222.1
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+|+|++. .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++..++..++|++|
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CeEEEEEEEEeCCC-CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceE
Confidence 38999999999754 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~~p 288 (377)
+||||+|.+|++||+|||.++. +..+.+++..+++.+++.+++..+|.++++.++ +.+|||||||||+|||||+++|
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p 158 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLAN-PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 158 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTS-TTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEecccccCCccccccccccC-ccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhccc
Confidence 9999999999999999999984 356788899999999999999999999999887 4689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhc-CHHHHH
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAK 367 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~ 367 (377)
+|||||||||+||+.+++.+++.|+++. +++|+|+||||++.++.||||++|++|+|++.|+|++++++ ++.|++
T Consensus 159 ~ililDEpts~LD~~~~~~i~~~l~~l~----~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~ 234 (241)
T d2pmka1 159 KILIFDEATSALDYESEHVIMRNMHKIC----KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 234 (241)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHH----TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHH
T ss_pred chhhhhCCccccCHHHHHHHHHHHHHHh----CCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHH
Confidence 9999999999999999999999999985 47899999999999988999999999999999999999987 568999
Q ss_pred HHHHHh
Q 017091 368 LVKRQT 373 (377)
Q Consensus 368 ~~~~~~ 373 (377)
+|+.|.
T Consensus 235 l~~~Q~ 240 (241)
T d2pmka1 235 LYQLQS 240 (241)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 998875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.2e-69 Score=500.11 Aligned_cols=241 Identities=47% Similarity=0.745 Sum_probs=227.1
Q ss_pred ccccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHh
Q 017091 128 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 207 (377)
Q Consensus 128 ~~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r 207 (377)
..+.|+++||+|+|+++ ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++..++...+|
T Consensus 10 ~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r 88 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 88 (253)
T ss_dssp CCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred CceEEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhh
Confidence 34579999999999864 35799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHc
Q 017091 208 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 208 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~ 285 (377)
++|+||||++.+|+.|+++|+.++.....+++++.++++.+++.++++.+|.|+++.++. .+|||||||||+|||||+
T Consensus 89 ~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~ 168 (253)
T d3b60a1 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 168 (253)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred heEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHh
Confidence 999999999999999999999998655677888999999999999999999999999874 689999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHH
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLY 365 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~ 365 (377)
++|+|||||||||+||+.++..+++.|+++. +++|+|+||||++.++.||+|++|++|+|++.|+|++++++++.|
T Consensus 169 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~----~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y 244 (253)
T d3b60a1 169 RDSPILILDEATSALDTESERAIQAALDELQ----KNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVY 244 (253)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHH----TTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSH
T ss_pred cCCCEEEeccccccCCHHHHHHHHHHHHHhc----cCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHH
Confidence 9999999999999999999999999999985 378999999999999889999999999999999999999999999
Q ss_pred HHHHHHHh
Q 017091 366 AKLVKRQT 373 (377)
Q Consensus 366 ~~~~~~~~ 373 (377)
+++|+.|.
T Consensus 245 ~~l~~~Q~ 252 (253)
T d3b60a1 245 AQLHKMQF 252 (253)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHcc
Confidence 99999885
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-69 Score=499.44 Aligned_cols=240 Identities=42% Similarity=0.699 Sum_probs=223.5
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
.+.|+++||+|+|++.++.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+++..++..++|+
T Consensus 9 ~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 88 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 88 (251)
T ss_dssp CCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred cceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHH
Confidence 35699999999998754567999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccC--CCCCChHHHHHHHHHHHHcC
Q 017091 209 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 209 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~LSgGq~QRv~iAral~~ 286 (377)
+|+||||+|++|+.||+||+.++........+...+.+..++.++++.+|.++++.++ +.+|||||||||+|||||++
T Consensus 89 ~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~ 168 (251)
T d1jj7a_ 89 QVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIR 168 (251)
T ss_dssp HEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTT
T ss_pred HhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecccc
Confidence 9999999999999999999999865566677778888888999999999999999887 46899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHH
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYA 366 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~ 366 (377)
+|+|||||||||+||+.++..+++.|.++.++ .++|+|+||||++.++.||||++|++|+|++.|+|+|++++++.|+
T Consensus 169 ~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~--~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~ 246 (251)
T d1jj7a_ 169 KPCVLILDDATSALDANSQLQVEQLLYESPER--YSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYW 246 (251)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTCGGG--GGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHH
T ss_pred CCcEEEecCcCcccChhhHHHHHHHHHHHhhh--cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHH
Confidence 99999999999999999999999999988653 4789999999999998899999999999999999999999999999
Q ss_pred HHHH
Q 017091 367 KLVK 370 (377)
Q Consensus 367 ~~~~ 370 (377)
+||+
T Consensus 247 ~l~~ 250 (251)
T d1jj7a_ 247 AMVQ 250 (251)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 9874
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3.8e-69 Score=499.13 Aligned_cols=239 Identities=47% Similarity=0.749 Sum_probs=225.1
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
.+.|+++||+|+|+++ ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++..++..++|+
T Consensus 14 ~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~ 92 (255)
T d2hyda1 14 QGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 92 (255)
T ss_dssp SCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCEEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhh
Confidence 3579999999999865 357999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcC
Q 017091 209 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 209 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~ 286 (377)
+|+||||++.+|++||+|||.++.+ ..+++++.++++.+++.+++..+|.|++|.++. .+|||||||||+|||||++
T Consensus 93 ~i~~v~Q~~~lf~~Ti~eNi~~g~~-~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 93 QIGLVQQDNILFSDTVKENILLGRP-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCS-SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred eeeeeeccccCCCCCHHHHHhccCc-CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999854 567888999999999999999999999999874 6899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHH
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYA 366 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~ 366 (377)
+|+|||||||||+||+.++..+++.|+++. +++|+|+||||++.+..||||++|++|+|++.|+|+|++++++.|+
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~----~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~ 247 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLS----KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYE 247 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHH
Confidence 999999999999999999999999999884 4789999999999998899999999999999999999999999999
Q ss_pred HHHHHHh
Q 017091 367 KLVKRQT 373 (377)
Q Consensus 367 ~~~~~~~ 373 (377)
++|..|.
T Consensus 248 ~l~~~Q~ 254 (255)
T d2hyda1 248 HLYSIQN 254 (255)
T ss_dssp HHHTTTT
T ss_pred HHHHHcC
Confidence 9998763
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.9e-69 Score=498.49 Aligned_cols=238 Identities=41% Similarity=0.661 Sum_probs=222.5
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+++||+|+|++. +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++..++...+|++|
T Consensus 1 mle~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 78 (242)
T d1mv5a_ 1 MLSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQI 78 (242)
T ss_dssp CEEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTC
T ss_pred CEEEEEEEEECCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhhe
Confidence 38999999999754 4799999999999999999999999999999999999999999999999999999888899999
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p 288 (377)
|||||+|.+|++|++||+.++......++.++.+++.+++.+++..+|.++++.++. .+|||||||||+|||||+++|
T Consensus 79 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p 158 (242)
T d1mv5a_ 79 GFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP 158 (242)
T ss_dssp CEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987655667888888888888889999999999998874 589999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHH
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 368 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 368 (377)
+|||||||||+||+.++..+++.|+++. +|+|+|+||||++.+..||||++|++|+|++.|+|+|++++++.|+++
T Consensus 159 ~ililDEpts~LD~~~~~~i~~~l~~l~----~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l 234 (242)
T d1mv5a_ 159 KILMLDEATASLDSESESMVQKALDSLM----KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKY 234 (242)
T ss_dssp SEEEEECCSCSSCSSSCCHHHHHHHHHH----TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHH
T ss_pred CEEEecCCccccCHHHHHHHHHHHHHHc----CCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCChHHHHH
Confidence 9999999999999999999999999985 378999999999999889999999999999999999999999999999
Q ss_pred HHHHhh
Q 017091 369 VKRQTE 374 (377)
Q Consensus 369 ~~~~~~ 374 (377)
+..|..
T Consensus 235 ~~~Q~~ 240 (242)
T d1mv5a_ 235 VSEQLT 240 (242)
T ss_dssp HHCCCC
T ss_pred HHHHhh
Confidence 998753
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.3e-63 Score=453.28 Aligned_cols=218 Identities=30% Similarity=0.508 Sum_probs=184.9
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhc
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 208 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 208 (377)
|..|+++||+|+|++ .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++. ++
T Consensus 4 M~~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r 78 (239)
T d1v43a3 4 MVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DR 78 (239)
T ss_dssp CCCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GG
T ss_pred cCeEEEEEEEEEECC---EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cc
Confidence 556999999999975 4799999999999999999999999999999999999999999999999999887654 56
Q ss_pred ceEEEccCCcCc-cccHHHHHhcCCCC-CCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHH
Q 017091 209 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 282 (377)
Q Consensus 209 ~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAr 282 (377)
+||||||++.+| ..||+||+.++... ..+.+ ++.++++.+++.++.++.| .+|||||||||+|||
T Consensus 79 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSGGq~QRvaiAr 149 (239)
T d1v43a3 79 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP---------AQLSGGQRQRVAVAR 149 (239)
T ss_dssp TEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT---------TTCCSSCHHHHHHHH
T ss_pred eEEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCCh---------hhCCHHHHHHHHHHh
Confidence 799999999999 68999999987532 22322 2334455555554444444 689999999999999
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
||+.+|++|||||||++|||.++.++++.|++++++ .|+|+|+||||++++.. ||||++|++|+|++.|++++++++
T Consensus 150 aL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~--~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 227 (239)
T d1v43a3 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK--LKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227 (239)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred hhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999999654 48999999999999976 999999999999999999999877
Q ss_pred C
Q 017091 362 G 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 228 P 228 (239)
T d1v43a3 228 P 228 (239)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.3e-63 Score=449.07 Aligned_cols=215 Identities=30% Similarity=0.481 Sum_probs=162.3
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
|+++||+|+|++ .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. +++||
T Consensus 1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceee
Confidence 689999999975 4699999999999999999999999999999999999999999999999999877643 56799
Q ss_pred EEccCCcCc-cccHHHHHhcCCCC-----CCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHc
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPK-----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 285 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~ 285 (377)
||||++.+| .+||+||+.++... ...++++.++++.+++.++.++.| .+|||||||||+|||||+
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~---------~~LSGGqkQRvaiAraL~ 146 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTLV 146 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC------------------------------CHHHHHH
T ss_pred eeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 999999998 68999999986421 112344666777777777777666 679999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 286 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 286 ~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
.+|++|||||||++||+.++..+++.|+++.++ .|+|+|+||||++++.. ||||++|++|+|++.|++++++++.
T Consensus 147 ~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~--~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 222 (232)
T d2awna2 147 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 222 (232)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--SCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 999999999999999999999999999998764 58999999999999976 9999999999999999999999763
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.7e-63 Score=455.56 Aligned_cols=222 Identities=31% Similarity=0.476 Sum_probs=190.6
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC---HHH
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRW 205 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~---~~~ 205 (377)
|..|+++||+|+|+.+ +..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...
T Consensus 1 M~~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~ 79 (242)
T d1oxxk2 1 MVRIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (242)
T ss_dssp CCCEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred CCEEEEEeEEEEECCC-CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcch
Confidence 4469999999999643 357999999999999999999999999999999999999999999999999987644 234
Q ss_pred HhcceEEEccCCcCc-cccHHHHHhcCCCC-CCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHH
Q 017091 206 LREKIGFVGQEPQLL-QMDIKSNIMYGCPK-DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 206 ~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~-~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~ 279 (377)
+|++||||||++.+| .+||+|||.++... ..+. +++.++++.+++.++.++.| .+|||||||||+
T Consensus 80 ~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p---------~~LSGGqkQRva 150 (242)
T d1oxxk2 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP---------RELSGAQQQRVA 150 (242)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHH
T ss_pred hhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCCh---------hhCCHHHHhHHH
Confidence 567899999999999 57999999987432 2222 33445555555555444444 679999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHH
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 358 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l 358 (377)
|||||+.+|++|||||||++||+.++..+++.|++++++ .|.|+|+||||++.+.. ||||++|++|+|++.|+++++
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~--~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el 228 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR--LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHH--HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhc--cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999754 48999999999999865 999999999999999999999
Q ss_pred hhcC
Q 017091 359 LHKG 362 (377)
Q Consensus 359 ~~~~ 362 (377)
++++
T Consensus 229 ~~~P 232 (242)
T d1oxxk2 229 YDNP 232 (242)
T ss_dssp HHSC
T ss_pred HhCC
Confidence 9764
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.1e-62 Score=447.15 Aligned_cols=215 Identities=33% Similarity=0.553 Sum_probs=189.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
+|+++||+|+|++ .+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. |++|
T Consensus 1 mi~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~i 74 (229)
T d3d31a2 1 MIEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDI 74 (229)
T ss_dssp CEEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTC
T ss_pred CEEEEEEEEEeCC----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhcc
Confidence 3899999999963 489999999999999999999999999999999999999999999999999887654 5689
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC--CCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 287 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~ 287 (377)
|||||++.+| .+||+||+.++.. .....+++.++++..++.++.++.| .+|||||||||+|||||+.+
T Consensus 75 g~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP---------LTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG---------GGSCHHHHHHHHHHHHTTSC
T ss_pred eeeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCCh---------hhCCHHHhcchhhhhhhhcc
Confidence 9999999999 6899999987531 1223556666676666655554444 67999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|++|||||||++|||.++..+++.|++++++ .|.|||+||||++++.. ||||++|++|+|++.|++++++++.
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~--~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P 219 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKK--NKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CCceeecCCCcCCCHHHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999998754 48999999999999876 9999999999999999999998763
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.4e-62 Score=449.80 Aligned_cols=220 Identities=30% Similarity=0.444 Sum_probs=189.0
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHH----
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---- 204 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~---- 204 (377)
|..|+++||+|+|++ .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..
T Consensus 1 M~~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~ 77 (240)
T d1g2912 1 MAGVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP 77 (240)
T ss_dssp CEEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECC
T ss_pred CCcEEEEeEEEEECC---EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcc
Confidence 446999999999975 4699999999999999999999999999999999999999999999999998765432
Q ss_pred HHhcceEEEccCCcCc-cccHHHHHhcCCC-CCCCH----HHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHH
Q 017091 205 WLREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 278 (377)
Q Consensus 205 ~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv 278 (377)
..|++||||||++.+| ..||+||+.++.. ...+. +++.+.++.+++.++.++.| .+|||||||||
T Consensus 78 ~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p---------~~LSGGqkQRv 148 (240)
T d1g2912 78 PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP---------RELSGGQRQRV 148 (240)
T ss_dssp GGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG---------GGSCHHHHHHH
T ss_pred cccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHH
Confidence 2367899999999999 5799999987531 11222 33455566666555444444 67999999999
Q ss_pred HHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHH
Q 017091 279 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 357 (377)
Q Consensus 279 ~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~ 357 (377)
+|||||+.+|++|||||||+|||+.++..+++.|++++++ .|.|||+||||++++.. ||||++|++|+|++.|+++|
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~--~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~e 226 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ--LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhc--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999998754 48999999999999976 99999999999999999999
Q ss_pred HhhcC
Q 017091 358 LLHKG 362 (377)
Q Consensus 358 l~~~~ 362 (377)
++++.
T Consensus 227 l~~~P 231 (240)
T d1g2912 227 VYDKP 231 (240)
T ss_dssp HHHSC
T ss_pred HHhCC
Confidence 98763
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.8e-62 Score=446.86 Aligned_cols=221 Identities=32% Similarity=0.477 Sum_probs=191.2
Q ss_pred cEEEEEEEEEcCCCCC-CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHH---H
Q 017091 131 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~-~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~---~ 206 (377)
+|+++||+|+|+.+.. .++|+||||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++...+.++ +
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence 3899999999975422 25899999999999999999999999999999999999999999999999998877643 5
Q ss_pred hcceEEEccCCcCc-cccHHHHHhcCC-----CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHH
Q 017091 207 REKIGFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 280 (377)
Q Consensus 207 r~~i~~v~Q~~~l~-~~tv~eni~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~i 280 (377)
|++||||||++.+| ..||+||+.++. +.....+++.++++.+++.++.++.| .+|||||||||+|
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~---------~~LSGG~~QRvai 151 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP---------SNLSGGQKQRVAI 151 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCB---------SCCCHHHHHHHHH
T ss_pred hccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHH
Confidence 67899999999998 579999998742 11112344556677776665554444 6799999999999
Q ss_pred HHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHh
Q 017091 281 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 359 (377)
Q Consensus 281 Aral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 359 (377)
||||+.+|++|||||||++||+.++..+++.|++++++ .|.|+|+||||++.+.. ||||++|++|+|++.|++++++
T Consensus 152 AraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~--~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 152 ARALASNPKVLLCDEATSALDPATTRSILELLKDINRR--LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHH--HCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred hhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhc--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999764 48999999999999976 9999999999999999999998
Q ss_pred hcC
Q 017091 360 HKG 362 (377)
Q Consensus 360 ~~~ 362 (377)
++.
T Consensus 230 ~~P 232 (240)
T d3dhwc1 230 SHP 232 (240)
T ss_dssp CSS
T ss_pred hCC
Confidence 753
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.2e-61 Score=441.25 Aligned_cols=218 Identities=32% Similarity=0.476 Sum_probs=178.4
Q ss_pred cEEEEEEEEEcCCCCC-CCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH---
Q 017091 131 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL--- 206 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~-~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~--- 206 (377)
+|+++||+|+|+.+.. ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..++.+++
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 3899999999975321 248999999999999999999999999999999999999999999999999998887653
Q ss_pred -hcceEEEccCCcCc-cccHHHHHhcCCC----CCCCHHHHHHHHHHcCHHHHHHhCCCCcc-cccCCCCCChHHHHHHH
Q 017091 207 -REKIGFVGQEPQLL-QMDIKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIA 279 (377)
Q Consensus 207 -r~~i~~v~Q~~~l~-~~tv~eni~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~LSgGq~QRv~ 279 (377)
|++||||||++.++ ..||+||+.++.. .....++..+ .+.+.++.+..... ....+.+|||||||||+
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRva 155 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRK-----RALECLKMAELEERFANHKPNQLSGGQQQRVA 155 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHH-----HHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred hcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHH-----HHHHHHHhhchhhhhhcCChhhCCHHHHHHHH
Confidence 45699999999988 6899999987421 1222222111 12223333222111 11223679999999999
Q ss_pred HHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcCh
Q 017091 280 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 355 (377)
Q Consensus 280 iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~ 355 (377)
|||||+.+|++||||||||+||+.++..+++.|+++.++ .|+|+|+||||++.++.||||++|++|+|+++|++
T Consensus 156 IAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~--~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 156 IARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEE--DGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHh--hCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999999999999999999764 58999999999998877999999999999999864
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.1e-59 Score=436.61 Aligned_cols=225 Identities=29% Similarity=0.453 Sum_probs=188.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCC--------
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-------- 202 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~-------- 202 (377)
.|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEEEEEEEECC---EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence 4899999999975 36999999999999999999999999999999999999999999999999986432
Q ss_pred -----HHHHhcceEEEccCCcCc-cccHHHHHhcCC--CCCCCH----HHHHHHHHHcCHHHH-HHhCCCCcccccCCCC
Q 017091 203 -----IRWLREKIGFVGQEPQLL-QMDIKSNIMYGC--PKDVKN----EDIEWAAKQAYVHEF-ILSLPCGYETLVDDDL 269 (377)
Q Consensus 203 -----~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~--~~~~~~----~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~ 269 (377)
...+|++||||||++.+| .+||.||+.++. ...... +++.++++.+++.+. .+++| .+
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p---------~~ 149 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP---------VH 149 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG---------GG
T ss_pred ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCc---------cc
Confidence 134677899999999998 589999998642 112222 234445555555443 23344 67
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCE
Q 017091 270 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 348 (377)
Q Consensus 270 LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~ 348 (377)
|||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++++ +|+|||+||||++.+.. ||||++|++|+
T Consensus 150 LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~---~g~til~vtHdl~~~~~~adri~vm~~G~ 226 (258)
T d1b0ua_ 150 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE---EGKTMVVVTHEMGFARHVSSHVIFLHQGK 226 (258)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH---TTCCEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc---cCCceEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999975 38999999999999876 99999999999
Q ss_pred EEEEcChHHHhhcC-HHH-HHHHH
Q 017091 349 IIEVGNHAELLHKG-RLY-AKLVK 370 (377)
Q Consensus 349 i~~~g~~~~l~~~~-~~~-~~~~~ 370 (377)
|+++|++++++++. ..| ++++.
T Consensus 227 iv~~g~~~ev~~~P~~~~~~~ll~ 250 (258)
T d1b0ua_ 227 IEEEGDPEQVFGNPQSPRLQQFLK 250 (258)
T ss_dssp EEEEECHHHHHHSCCSHHHHHHHH
T ss_pred EEEEcCHHHHHhCCCCHHHHHHHh
Confidence 99999999998763 233 44443
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.5e-59 Score=429.23 Aligned_cols=217 Identities=22% Similarity=0.403 Sum_probs=183.6
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHH-hcc
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK 209 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~-r~~ 209 (377)
.|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+.... |..
T Consensus 6 ~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEeeEEEEECC---EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 5899999999975 369999999999999999999999999999999999999999999999999998876654 445
Q ss_pred eEEEccCCcCc-cccHHHHHhcCCCCCCCHHHHH----HHHHHc-CHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHH
Q 017091 210 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIE----WAAKQA-YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 283 (377)
Q Consensus 210 i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~----~~~~~~-~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAra 283 (377)
|+|+||++.+| .+||+||+.++.......+... ++.+.. ++.+..++. ..+|||||||||+||||
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~LSGG~~Qrv~iAra 153 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQL---------GGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSB---------SSSSCHHHHHHHHHHHH
T ss_pred ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCc---------hhhCCHHHHHHHHHHHH
Confidence 99999999999 5899999987543222222222 222221 222222222 26799999999999999
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcC
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 362 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~ 362 (377)
|+.+|++|||||||+||||.++.++++.|+++++ +|+|||+||||++.+.. ||||++|++|+|++.|+++++++++
T Consensus 154 L~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~---~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ---EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred HHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcCH
Confidence 9999999999999999999999999999999975 48999999999999865 9999999999999999999998764
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=7.2e-59 Score=431.02 Aligned_cols=221 Identities=25% Similarity=0.376 Sum_probs=183.4
Q ss_pred cccEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHh-
Q 017091 129 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR- 207 (377)
Q Consensus 129 ~~~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r- 207 (377)
|..|+++||+++|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...++.+++
T Consensus 2 M~iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 78 (254)
T d1g6ha_ 2 MEILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 78 (254)
T ss_dssp CEEEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred cceEEEEEEEEEECC---eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHH
Confidence 557999999999975 3699999999999999999999999999999999999999999999999999988887654
Q ss_pred cceEEEccCCcCc-cccHHHHHhcCCCCC--------------CCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCCh
Q 017091 208 EKIGFVGQEPQLL-QMDIKSNIMYGCPKD--------------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG 272 (377)
Q Consensus 208 ~~i~~v~Q~~~l~-~~tv~eni~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSg 272 (377)
..|+|+||++.+| ..||+||+.++.... ...++.. ..+.+.++.+...........+|||
T Consensus 79 ~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSg 153 (254)
T d1g6ha_ 79 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFLKLSHLYDRKAGELSG 153 (254)
T ss_dssp HTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHTTCGGGTTSBGGGSCH
T ss_pred hcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHH-----HHHHHHHHhcCcchhccCchhhCCc
Confidence 4599999999988 689999998753110 0111111 1122333333221111122367999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEE
Q 017091 273 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 351 (377)
Q Consensus 273 Gq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~ 351 (377)
||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||+||||++++.. ||||++|++|+|++
T Consensus 154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~---~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~ 230 (254)
T d1g6ha_ 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA---KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 230 (254)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999999999964 48999999999999865 99999999999999
Q ss_pred EcChHHHhh
Q 017091 352 VGNHAELLH 360 (377)
Q Consensus 352 ~g~~~~l~~ 360 (377)
+|+++|+..
T Consensus 231 ~g~~~e~~~ 239 (254)
T d1g6ha_ 231 EGRGEEEIK 239 (254)
T ss_dssp EEESHHHHH
T ss_pred EecHHHHhh
Confidence 999998754
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=9.8e-58 Score=418.83 Aligned_cols=215 Identities=26% Similarity=0.381 Sum_probs=182.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+++|++ ++||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ....|+.+
T Consensus 2 aI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i 77 (238)
T d1vpla_ 2 AVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLI 77 (238)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTE
T ss_pred CEEEEeEEEEECC---EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC-hHHHHhhE
Confidence 5899999999975 3699999999999999999999999999999999999999999999999998764 55778899
Q ss_pred EEEccCCcCc-cccHHHHHhcCCC-CCCCHHHH----HHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHH
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 284 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~~-~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral 284 (377)
||+||++.+| ++|+.||+.+... ......++ ...++..++.+..++. ..+||||||||++|||||
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~lSgG~~qrv~iA~al 148 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDR---------VSTYSKGMVRKLLIARAL 148 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSB---------GGGCCHHHHHHHHHHHHH
T ss_pred eEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhh---------hhhCCHHHHHHHHHHHHH
Confidence 9999999888 6899999965321 11223332 2233333333222222 257999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+.+|++|||||||+||||.++..+.+.++++++ .|+|||++|||++++.. ||||++|++|+|++.|+++++.++
T Consensus 149 ~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~---~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 149 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQ---EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999999999999999999999999999875 48999999999999976 999999999999999999999764
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.4e-57 Score=415.39 Aligned_cols=211 Identities=27% Similarity=0.467 Sum_probs=178.2
Q ss_pred EEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceE
Q 017091 132 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 211 (377)
Q Consensus 132 i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 211 (377)
+++ ++.++|++- .+ ||||++. +|+++|+||||||||||+|+|+|+++|++|+|.++|+++...++. |++||
T Consensus 3 l~v-~~~k~~g~~----~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGNF----RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETTE----EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECCE----EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCce
Confidence 677 678999742 34 8999995 689999999999999999999999999999999999999887654 67899
Q ss_pred EEccCCcCc-cccHHHHHhcCCCCCCCHH----HHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 212 FVGQEPQLL-QMDIKSNIMYGCPKDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 212 ~v~Q~~~l~-~~tv~eni~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
||||++.+| .+||+||+.|+.. ..... ++.++++.+++.++.++. +.+|||||||||+|||||+.
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~-~~~~~~~~~~v~~~l~~~gl~~~~~~~---------~~~LSGG~kQRvaiAral~~ 143 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLR-NVERVERDRRVREMAEKLGIAHLLDRK---------PARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCT-TSCHHHHHHHHHHHHHTTTCTTTTTCC---------GGGSCHHHHHHHHHHHHHTT
T ss_pred eeccchhhcccchhhHhhhhhhc-ccCHHHHHHHHHHHHHhcCcHhhhhCC---------hhhCCHHHHHHHHHHHHHhc
Confidence 999999999 5899999999853 23322 233334444443333333 36899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhcCH
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGR 363 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~~~ 363 (377)
+|++|||||||+|||+.++..+++.|+++.++ .|.|||+||||++++.. ||||++|++|+|++.|+++++++...
T Consensus 144 ~P~illlDEPts~LD~~~~~~i~~~i~~l~~~--~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~ 219 (240)
T d2onka1 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQRE--FDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKN 219 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHH--HTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCC
T ss_pred cCCceEecCccccCCHHHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCC
Confidence 99999999999999999999999999999653 48899999999999876 99999999999999999999987643
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.7e-57 Score=422.40 Aligned_cols=216 Identities=27% Similarity=0.430 Sum_probs=188.4
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++|+++ .+ ++||+||||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 38 ~i~~~~~~~--~g---~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i 99 (281)
T d1r0wa_ 38 NVSFSHLCL--VG---NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RV 99 (281)
T ss_dssp --CHHHHHH--TT---CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CE
T ss_pred cEEEEEcCC--CC---CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------EE
Confidence 355555543 32 3799999999999999999999999999999999999999999999988 48
Q ss_pred EEEccCCcCccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCC--CCCChHHHHHHHHHHHHcCCC
Q 017091 211 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP 288 (377)
Q Consensus 211 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~LSgGq~QRv~iAral~~~p 288 (377)
+|+||++.+|++||+||+.++. .........+.+.+.+...+..+|.++++.++. .+|||||||||+|||||+++|
T Consensus 100 ~~v~Q~~~l~~~tv~eni~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p 177 (281)
T d1r0wa_ 100 SFCSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177 (281)
T ss_dssp EEECSSCCCCSEEHHHHHTTTS--CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEeccccccCceeeccccccc--cccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999974 345667778888888889999999999988764 589999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeCCEEEEEcChHHHhhcCHHHHHH
Q 017091 289 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 368 (377)
Q Consensus 289 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 368 (377)
+|||||||||+||+.+++.+++.+.... ..++|+|+|||+++.++.||||++|++|+|++.|+|+|+++..+.|...
T Consensus 178 ~illLDEPts~LD~~~~~~i~~~~~~~~---~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~ 254 (281)
T d1r0wa_ 178 DLYLLDSPFGYLDVFTEEQVFESCVCKL---MANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSK 254 (281)
T ss_dssp SEEEEESCCCSSCHHHHHHHHHHCCCCC---TTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHH
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHHh---hCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhccCcHHHHH
Confidence 9999999999999999988877533221 3578999999999999889999999999999999999999877777655
Q ss_pred H
Q 017091 369 V 369 (377)
Q Consensus 369 ~ 369 (377)
+
T Consensus 255 ~ 255 (281)
T d1r0wa_ 255 L 255 (281)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.1e-53 Score=387.06 Aligned_cols=213 Identities=21% Similarity=0.325 Sum_probs=182.2
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.++++||+++| +|+||||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++..++...++...
T Consensus 3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECcccCc-------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhc
Confidence 48999997654 799999999999999999999999999999999976 6899999999999988888888889
Q ss_pred EEEccCCcC-ccccHHHHHhcCCCCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC---
Q 017091 211 GFVGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR--- 286 (377)
Q Consensus 211 ~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~--- 286 (377)
+|++|+... |..++++++.++.......+.+.+.++..++.+++++. ..+|||||||||+|||||++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~LSgG~~Qrv~iA~al~~~~p 145 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS---------TNQLSGGEWQRVRLAAVVLQITP 145 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSB---------GGGCCHHHHHHHHHHHHHHHHCT
T ss_pred eeeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcC---------hhhcCHHHHHHHHHHHHHHhhCc
Confidence 999998764 57899999987654444455555555555544333222 25799999999999999997
Q ss_pred ----CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHh-cCeEEEEeCCEEEEEcChHHHhhc
Q 017091 287 ----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 361 (377)
Q Consensus 287 ----~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 361 (377)
+|+||||||||+|||+.++..+.+.++++++ .|.|||++|||++.+.. ||||++|++|++++.|++++++++
T Consensus 146 ~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~---~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 146 QANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ---QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp TTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH---TTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence 7799999999999999999999999999975 48999999999998865 999999999999999999999875
Q ss_pred CH
Q 017091 362 GR 363 (377)
Q Consensus 362 ~~ 363 (377)
+.
T Consensus 223 ~~ 224 (231)
T d1l7vc_ 223 PN 224 (231)
T ss_dssp HH
T ss_pred hH
Confidence 43
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4.4e-48 Score=346.22 Aligned_cols=192 Identities=24% Similarity=0.374 Sum_probs=155.7
Q ss_pred cEEEEEEEEEcCCCCCCCceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcce
Q 017091 131 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 210 (377)
Q Consensus 131 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 210 (377)
.|+++||+|+|+ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||+++.. .+.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcE
Confidence 489999999994 269999999999999999999999999999999999999999999999999753 46789
Q ss_pred EEEccCCcCc-cccHHHHHhcCC---CCCCCHHHHHHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcC
Q 017091 211 GFVGQEPQLL-QMDIKSNIMYGC---PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 286 (377)
Q Consensus 211 ~~v~Q~~~l~-~~tv~eni~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~ 286 (377)
+|+||++.++ ..|+.||+.+.. .....++++.++++..++. ++.. ...+||||||||++|||||+.
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~--~~~~LSgG~~qrv~ia~al~~ 142 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL--------DLKK--KLGELSQGTIRRVQLASTLLV 142 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC--------CTTS--BGGGSCHHHHHHHHHHHHTTS
T ss_pred EEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCc--------cccc--ccCcCCCcHHHHHHHHHHHhc
Confidence 9999999887 679999986421 1233455554444433221 1111 125799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEEeC
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 346 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l~~ 346 (377)
+|+++||||||+|||+.++..+++.|.++.++ ++.++|.++|+++ .||++.+|++
T Consensus 143 ~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~--~~~~ii~~~~~l~---~~D~~~~l~~ 197 (200)
T d1sgwa_ 143 NAEIYVLDDPVVAIDEDSKHKVLKSILEILKE--KGIVIISSREELS---YCDVNENLHK 197 (200)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH--HSEEEEEESSCCT---TSSEEEEGGG
T ss_pred CCCEEEEcCcccccCHHHHHHHHHHHHHHHhC--CCEEEEEEechhh---hcchhhheee
Confidence 99999999999999999999999999988654 3666666666654 5999988854
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.81 E-value=5e-22 Score=171.39 Aligned_cols=161 Identities=14% Similarity=0.086 Sum_probs=103.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCEeCCCCCHHHHhcceEEEccCCcCccccHHHHHhcCCCCCCCHHHH
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 241 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 241 (377)
.++|+||||||||||++.|+|.++|+.|.+.+.+.+..............+.++...++..+...+...+. .....+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 78 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS-YGVNVQ-- 78 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT-EEECHH--
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhh-hhcCcc--
Confidence 48999999999999999999999999999999887654322110001111111222222222211111110 000000
Q ss_pred HHHHHHcCHHHHHHhCCCCcccccCCCCCChHHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCC
Q 017091 242 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT 321 (377)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~LSgGq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~ 321 (377)
. ..+|+|+++|.++++++..+|+++++|||....+. ...+.+.+.++.+ ..
T Consensus 79 -----------~--------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~--~~ 129 (178)
T d1ye8a1 79 -----------Y--------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMH--DP 129 (178)
T ss_dssp -----------H--------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHT--CT
T ss_pred -----------h--------------hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchh--hHHHHHHHHHHhc--cC
Confidence 0 12689999999999999999999999998544332 2344455555443 24
Q ss_pred CeEEEEEecCchhHHhcCeEEEEeCCEEEEEcC
Q 017091 322 KRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 354 (377)
Q Consensus 322 g~tvi~itH~l~~~~~~d~v~~l~~G~i~~~g~ 354 (377)
+.++|+++|+.+....||++..+.+|++++.+.
T Consensus 130 ~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 130 NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CCEEEEEEccHHHHHhhceEEEEeCCEEEEECC
Confidence 789999999987777799999999999988654
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.53 E-value=1.1e-14 Score=140.90 Aligned_cols=73 Identities=27% Similarity=0.395 Sum_probs=62.3
Q ss_pred CCChHHHHHHHHHHHH----cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEEE
Q 017091 269 LLSGGQKQRIAIARAI----LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 344 (377)
Q Consensus 269 ~LSgGq~QRv~iAral----~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~l 344 (377)
.||||||.+++||-.+ ..++++++||||+++||+.....+.+.|.++.. .+.-+|+|||++..+..||+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~---~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN---PDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB---TTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC---CCCEEEEEeCCHHHHHhcccEEEE
Confidence 4799999998876544 567889999999999999999999999988742 345699999999999999997755
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.38 E-value=1.4e-12 Score=120.87 Aligned_cols=75 Identities=29% Similarity=0.430 Sum_probs=64.2
Q ss_pred CCChHHHHHHHHHHHH----cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhHHhcCeEEE-
Q 017091 269 LLSGGQKQRIAIARAI----LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV- 343 (377)
Q Consensus 269 ~LSgGq~QRv~iAral----~~~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~~~~d~v~~- 343 (377)
.+|+|||+...++..+ ..+|+++++|||-++|+|....++.+.|++.. ++.-+|++||++..+..+|+++.
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~----~~~QviitTHsp~~~~~~d~~~~v 294 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS----KHTQFIVITHNKIVMEAADLLHGV 294 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT----TTSEEEEECCCTTGGGGCSEEEEE
T ss_pred hhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhc----cCCEEEEEECCHHHHHhcccEEEE
Confidence 5899999998776653 45789999999999999999999999999884 35679999999999999999855
Q ss_pred -EeCC
Q 017091 344 -IDDG 347 (377)
Q Consensus 344 -l~~G 347 (377)
+++|
T Consensus 295 ~~~~g 299 (308)
T d1e69a_ 295 TMVNG 299 (308)
T ss_dssp EESSS
T ss_pred EEeCC
Confidence 5566
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.24 E-value=4.6e-11 Score=109.21 Aligned_cols=114 Identities=11% Similarity=0.149 Sum_probs=104.3
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+|+.|+.+.+++++..++..+...+..+...........+..+..++++++|++++..|.+|+|++++++.+...
T Consensus 205 ~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~ 284 (319)
T d3b60a2 205 HKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIA 284 (319)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHH
T ss_pred CceeeehhccchhhhhhhhhhhhhhHHHHHHHHHHHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999888887777777776667777777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS 115 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~ 115 (377)
+..|+..+...+..++++..+.+|+.+++|.|||
T Consensus 285 ~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 285 LMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999876
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.23 E-value=8e-11 Score=107.90 Aligned_cols=114 Identities=19% Similarity=0.266 Sum_probs=104.3
Q ss_pred chhhhhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Q 017091 2 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 81 (377)
Q Consensus 2 ~~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~ 81 (377)
+++||+||.|+.+.++|++..++..+...+..+...........+..+..++++++|++++.+|.+|+|++++++.+...
T Consensus 210 ~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~ 289 (323)
T d2hyda2 210 ISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLEL 289 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHH
T ss_pred CchhhhHhhhccchhhhhcccccccchhhHHhhhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999999999888887777777777777777788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 017091 82 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS 115 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~ 115 (377)
+..|+..+...+..++++..+++|+.+++|++||
T Consensus 290 l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~e 323 (323)
T d2hyda2 290 LFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYD 323 (323)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 9999999999999999999999999999998765
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.34 E-value=2.1e-06 Score=75.56 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=36.5
Q ss_pred HcCCCCEEEEeCcCCCCCHHHHHHHHHH-HHHhhccCCCCeEEEEEecCchhHH
Q 017091 284 ILRDPAILLLDEATSALDSESEHYVKGV-LHALRNDCKTKRTVIVIAHRLSTIK 336 (377)
Q Consensus 284 l~~~p~illlDEPts~LD~~~~~~i~~~-l~~l~~~~~~g~tvi~itH~l~~~~ 336 (377)
-+.+..++|+||+..|=|+.....+... ++.+.+ .+..++++||..+...
T Consensus 111 ~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~---~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 111 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTA 161 (224)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHT
T ss_pred cCCCCcEEeecccccCcchhhhcchHHHHHHHHhh---cCcceEEeeechhhhh
Confidence 3456779999999999999766655444 444543 3678999999877654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.20 E-value=6.6e-06 Score=72.77 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=35.7
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHH-HHHHhhccCCCCeEEEEEecCchhH
Q 017091 285 LRDPAILLLDEATSALDSESEHYVKG-VLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 285 ~~~p~illlDEPts~LD~~~~~~i~~-~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
..+..++|+||+..|=|+.....+.. .+..+... .+..+|++||..+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~--~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK--IKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT--TCCEEEEECSCGGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhcc--ccceEEEecchHHHh
Confidence 45567999999999999987766654 45556432 356788899976654
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.70 E-value=5.3e-05 Score=67.69 Aligned_cols=33 Identities=36% Similarity=0.409 Sum_probs=27.3
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 181 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~ 181 (377)
-|+++..-+.+|+++.|.|++|+|||||+.-++
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 455554458999999999999999999987776
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.61 E-value=1.1e-05 Score=68.03 Aligned_cols=26 Identities=38% Similarity=0.400 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
|.++.|+||||||||||++.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987664
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=1.4e-06 Score=73.48 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=29.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.+++.+|++.+| +++|+|||||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 468888888876 9999999999999999999743
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.59 E-value=1.7e-05 Score=69.34 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=26.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 193 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i 193 (377)
+|++++++|+||+|||||++.|.+-..-..|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCccc
Confidence 58999999999999999999999877777787753
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=1.2e-05 Score=66.08 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
+++|+|++|||||||++-|...+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987554
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=3.6e-06 Score=69.86 Aligned_cols=35 Identities=20% Similarity=0.141 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECCE
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF 196 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g~ 196 (377)
.+.|+||+|||||||++.++..+....+.+.+.+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~ 37 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYT 37 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 58899999999999999999999877666655443
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.47 E-value=2.8e-05 Score=64.02 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.|++++|.||+||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999998765
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.42 E-value=3.2e-05 Score=63.69 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+|-++.|+|++||||||+.+.|+.-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998554
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.34 E-value=1.9e-05 Score=69.33 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 193 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i 193 (377)
+|..++++|+||+|||||++.|.|-..-..|+|.=
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence 58899999999999999999999877777788763
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=0.00015 Score=64.43 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=30.9
Q ss_pred HHcCCCCEEEEeCcCCCC-----CHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 017091 283 AILRDPAILLLDEATSAL-----DSESEHYVKGVLHALRNDCKTKRTVIVIAH 330 (377)
Q Consensus 283 al~~~p~illlDEPts~L-----D~~~~~~i~~~l~~l~~~~~~g~tvi~itH 330 (377)
.-..+|+++++|--++-. |......+...|+.+.+. .++++|++.|
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~--~~~~vi~v~H 178 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAAD--TGCSIVFLHH 178 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHH--HCCEEEEEEE
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhc--CCCceehhhh
Confidence 345799999999654321 444455666666666543 4789999988
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.32 E-value=4.9e-05 Score=62.37 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+.+.++.|.||+||||||+.+.|+.-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998654
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.29 E-value=4.3e-05 Score=63.04 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPS 187 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~ 187 (377)
.+++|+|++|||||||++-|...++..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 378999999999999998887766543
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.27 E-value=5.8e-05 Score=62.20 Aligned_cols=24 Identities=46% Similarity=0.639 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
..++|+||+|||||||++.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999765
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.25 E-value=7.5e-05 Score=61.30 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++|-.++|.||+||||||+.+.|+--+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998655
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.22 E-value=6.9e-05 Score=62.72 Aligned_cols=24 Identities=46% Similarity=0.576 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
++||.||+|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986554
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.21 E-value=8e-05 Score=61.00 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998774
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=8.9e-05 Score=63.82 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.|.++.|+||||||||||.+.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 48899999999999999999887543
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.19 E-value=7.4e-05 Score=61.72 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCCCCe
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 190 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~ 190 (377)
+.+++|.|++||||||+++.|+-.+......
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHcCCC
Confidence 3689999999999999999998766544333
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=8.9e-05 Score=59.68 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.13 E-value=0.0001 Score=59.24 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhh
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~g 182 (377)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999997754
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=7.3e-05 Score=62.60 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+|-++.|+|++||||||+.+.|+..+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999998654
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.08 E-value=0.00011 Score=59.74 Aligned_cols=32 Identities=34% Similarity=0.534 Sum_probs=25.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 195 (377)
.++.|+||+||||||+.+.|+..+. +.+.++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 4689999999999999999997663 3444444
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.06 E-value=0.00012 Score=59.68 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+||+||||||+.+.|+--+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999997543
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.01 E-value=0.0017 Score=53.79 Aligned_cols=24 Identities=50% Similarity=0.732 Sum_probs=20.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHh
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLL 181 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~ 181 (377)
++-+++.++|++||||||+.+-++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 445799999999999999999875
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.98 E-value=0.00067 Score=59.04 Aligned_cols=44 Identities=16% Similarity=0.342 Sum_probs=32.7
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
+.+++++||.-. |.......+.+.+.+. .....+|++|++++.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~----~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKY----SKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHS----TTTEEEEEEESCSCSS
T ss_pred CceEEEeccccc-cccccchhhhcccccc----cccccceeeeccccch
Confidence 567999999954 7888777777777654 2345689999988744
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.96 E-value=0.00032 Score=58.29 Aligned_cols=22 Identities=50% Similarity=0.605 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.+||+|++|+|||||++.|+|-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999874
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.0002 Score=61.29 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++||.|++||||||+.+.|.-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999987654
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.88 E-value=0.00022 Score=60.04 Aligned_cols=22 Identities=45% Similarity=0.730 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 017091 163 VAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++|+||||||||||++.|+.-.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999987543
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.88 E-value=0.0045 Score=54.26 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 017091 163 VAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+.+.||.|||||+|++.|+..+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6899999999999999999743
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.87 E-value=0.00021 Score=60.21 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999853
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.00025 Score=59.44 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl 183 (377)
..+.|+||||+|||||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999988754
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.77 E-value=0.0003 Score=59.45 Aligned_cols=21 Identities=43% Similarity=0.654 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 017091 163 VAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~gl 183 (377)
++|+||||||||||.+.|+-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998653
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.77 E-value=0.00031 Score=59.08 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
..+++|+||.||||||+.+.|+--+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998644
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.74 E-value=0.0021 Score=55.14 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=14.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
-.+++++||+|+||||.+-=|+..
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999876444433
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.73 E-value=0.00037 Score=57.32 Aligned_cols=23 Identities=43% Similarity=0.528 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|+|||||++.|+|-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999743
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.00049 Score=57.56 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=23.9
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhh
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
+++|+++.|.||+|||||||+.-++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999977764
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.69 E-value=0.00038 Score=60.12 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++|+|+.|||||||++.|....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 68999999999999999997643
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.69 E-value=0.00046 Score=57.80 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl 183 (377)
++|=.+.|+||.||||||..+.|+--
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHH
Confidence 46778899999999999999999943
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.68 E-value=0.0004 Score=56.90 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 017091 163 VAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+.|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999999999998665
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.67 E-value=0.00044 Score=55.41 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.+.|+|++|||||||++.+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998753
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.66 E-value=0.00026 Score=59.00 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 017091 163 VAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~gl 183 (377)
+||+|++++|||||++.|.|-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999764
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.65 E-value=0.00045 Score=57.20 Aligned_cols=22 Identities=55% Similarity=0.690 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
+++|+|++|+|||||++.|+|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.65 E-value=0.00047 Score=55.18 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.+.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999974
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.64 E-value=0.00039 Score=57.56 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.63 E-value=0.0004 Score=57.20 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+.+.|+|++||||||+.+.|+--+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999998544
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.00048 Score=56.66 Aligned_cols=22 Identities=50% Similarity=0.646 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
+++|+|.+|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.61 E-value=0.00041 Score=63.80 Aligned_cols=37 Identities=27% Similarity=0.486 Sum_probs=30.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 193 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i 193 (377)
++.|.-+.|+|+.|||||||++.|++..+|+.=-|.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 4456668999999999999999999999876544555
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.61 E-value=0.00051 Score=55.38 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHH
Q 017091 273 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 314 (377)
Q Consensus 273 Gq~QRv~iAral~~~p~illlDEPts~LD~~~~~~i~~~l~~ 314 (377)
.+.-.-.++..++.+..+-++ |+|+.+-....++++.|.+
T Consensus 124 ~~~i~~~~~~~~~~~~~~~~~--~~SA~~g~gv~e~~~~l~~ 163 (169)
T d1upta_ 124 SSEMANSLGLPALKDRKWQIF--KTSATKGTGLDEAMEWLVE 163 (169)
T ss_dssp HHHHHHHHTGGGCTTSCEEEE--ECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEE--EEeCCCCCCHHHHHHHHHH
Confidence 344444556666666666666 8999998888877766644
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.60 E-value=0.00039 Score=58.54 Aligned_cols=28 Identities=29% Similarity=0.574 Sum_probs=24.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++++.++.|+||.||||||+.+.|+--+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998754
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.60 E-value=0.00048 Score=57.95 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
-.+++|+||.||||||+.+.|+.-+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999766
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.57 E-value=0.00037 Score=57.22 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|||||||++.+.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998754
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.56 E-value=0.00056 Score=57.71 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|||||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999874
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.51 E-value=0.0006 Score=55.10 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl 183 (377)
=.++|+|+.|+|||||++.|.|.
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999975
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.00062 Score=57.00 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++.|+||.||||||..+.|+--+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998644
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.50 E-value=0.00048 Score=57.66 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++.|.||.||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998554
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.49 E-value=0.00061 Score=55.76 Aligned_cols=22 Identities=45% Similarity=0.619 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 017091 163 VAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+.|+|++||||||+.+.|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998654
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.48 E-value=0.0006 Score=56.20 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
++.|.|++||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 677899999999999999997764
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.48 E-value=0.00041 Score=57.51 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 017091 163 VAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~gl 183 (377)
+||+|++|+|||||++.|.|-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999875
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.48 E-value=0.00067 Score=55.97 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999997544
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.47 E-value=0.00061 Score=57.04 Aligned_cols=21 Identities=48% Similarity=0.656 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
++||+|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.42 E-value=0.00073 Score=57.69 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC---CCCCCeE
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY---EPSDGQI 191 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~---~p~~G~I 191 (377)
+++|-||+||||||..+.|+--+ .-++|.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl 37 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 37 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 57889999999999999999543 3445543
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.35 E-value=0.00089 Score=55.56 Aligned_cols=23 Identities=30% Similarity=0.653 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999655
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.34 E-value=0.00065 Score=56.96 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
-+++|-|+.||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998765
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.33 E-value=0.00091 Score=56.26 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
+++++|.+||||||+.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999997553
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.32 E-value=0.0012 Score=53.47 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|+.|||||||++.+.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999998754
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.00095 Score=56.66 Aligned_cols=30 Identities=33% Similarity=0.481 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh---hCCCCCCCeE
Q 017091 162 VVAIVGLSGSGKSTFVNLLL---RLYEPSDGQI 191 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~---gl~~p~~G~I 191 (377)
+++|.||.||||||+.+.|+ |+..-++|.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 89999999999999999998 4444456655
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.28 E-value=0.001 Score=57.02 Aligned_cols=42 Identities=26% Similarity=0.237 Sum_probs=31.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCC--CCCeEEECCEeCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLT 199 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p--~~G~I~i~g~~i~ 199 (377)
++|-++.+.|.|||||||+.+.|..-+.. ..-.+.+||..+.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence 56889999999999999999998743321 1235778887654
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.0006 Score=62.15 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
++||.|++||||||+.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 789999999999999999987763
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.23 E-value=0.0026 Score=51.88 Aligned_cols=29 Identities=34% Similarity=0.551 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhh-----CCCCCCCe
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR-----LYEPSDGQ 190 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g-----l~~p~~G~ 190 (377)
.++++|.+|+|||||++-+.+ -+.|+-|.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~ 37 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED 37 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCcceee
Confidence 478999999999999987765 24465553
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.23 E-value=0.0011 Score=56.48 Aligned_cols=20 Identities=45% Similarity=0.707 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 017091 162 VVAIVGLSGSGKSTFVNLLL 181 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~ 181 (377)
++||+|+.||||||+.+++.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.00054 Score=56.35 Aligned_cols=23 Identities=39% Similarity=0.406 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++++|||||++.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999998754
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.19 E-value=0.0011 Score=58.11 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEECC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 195 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i~g 195 (377)
..+.+.||+|||||||.+.|++.+. .+-+.+++
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh--cceEEEec
Confidence 3588999999999999999998764 23455555
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.18 E-value=0.0011 Score=58.64 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+|++|+|||||+|.|.|-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999864
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.0012 Score=54.62 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+.|+||.||||||..+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998544
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.16 E-value=0.00079 Score=58.05 Aligned_cols=27 Identities=44% Similarity=0.591 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
++.+++|-|+-||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998763
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.15 E-value=0.00043 Score=55.95 Aligned_cols=22 Identities=45% Similarity=0.558 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++.|.|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.12 E-value=0.0014 Score=54.19 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998554
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.003 Score=51.31 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998764
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.06 E-value=0.0017 Score=55.62 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=23.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHh
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLL 181 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~ 181 (377)
+++|+++.|.||+|||||||..-++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999997665
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.01 E-value=0.0016 Score=53.20 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|.+|||||||++.|.+-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.01 E-value=0.0017 Score=55.52 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
++|-+++|-|+-||||||+.+.|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999877553
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.00 E-value=0.0018 Score=55.02 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+|.+++|-|+-||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998654
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.97 E-value=0.0018 Score=54.61 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|+.|||||||++.+.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.92 E-value=0.0017 Score=53.81 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 017091 163 VAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+||+|+..||||||++.|.|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999998743
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.89 E-value=0.0021 Score=53.97 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++|+||.||||||+.+.|+--+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999654
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.86 E-value=0.0022 Score=53.09 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+.|+||.||||||+.+.|+--+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999998654
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.86 E-value=0.0022 Score=52.43 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++|+|++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 378999999999999998875
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.86 E-value=0.0022 Score=52.01 Aligned_cols=21 Identities=48% Similarity=0.744 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998765
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.84 E-value=0.0024 Score=55.39 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.+.|.||+|+||||++++++..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998653
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.81 E-value=0.0024 Score=52.16 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|++|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 388999999999999998764
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.79 E-value=0.0022 Score=60.45 Aligned_cols=24 Identities=46% Similarity=0.659 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.+||+|++|+|||||+|.|.|.-.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 389999999999999999999654
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.79 E-value=0.0021 Score=55.17 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+.|.||+|+||||++++++..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 37899999999999999998755
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.78 E-value=0.0024 Score=54.63 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
+|.+++|-|+-||||||++++|.-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999999999999986654
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.78 E-value=0.0043 Score=50.59 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++|+|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999987764
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.77 E-value=0.0026 Score=54.11 Aligned_cols=21 Identities=48% Similarity=0.615 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
++||+|..||||||..+++..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 789999999999999999864
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.76 E-value=0.0024 Score=55.48 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhh
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
.+.++.|.||.|+|||||++.++.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 457899999999999999998764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.76 E-value=0.0015 Score=59.90 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
-++||+||.|||||||+..|...+.
T Consensus 55 ~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 55 LRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999986654
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.0056 Score=49.79 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|++|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.70 E-value=0.0034 Score=50.92 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|++|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988753
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.70 E-value=0.0031 Score=53.50 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHH
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLL 180 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l 180 (377)
+++|+++.|.|++|+|||||+.-+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 899999999999999999998543
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.67 E-value=0.0033 Score=54.11 Aligned_cols=26 Identities=19% Similarity=0.470 Sum_probs=23.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhh
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
+++|..+.|.||+|||||||+.-++-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999966653
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.66 E-value=0.0014 Score=59.02 Aligned_cols=24 Identities=25% Similarity=0.588 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
++||.|+|||||||+.+.|.-.+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999877553
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.65 E-value=0.0023 Score=52.27 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|+.|+|||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999998865
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.0029 Score=54.45 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhh
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
+++|+++.|.||+|||||||...++.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999999877763
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.64 E-value=0.003 Score=51.84 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998765
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.64 E-value=0.003 Score=53.98 Aligned_cols=26 Identities=42% Similarity=0.664 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++.+++++||+|+||||.+-=|+..+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999875455544
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.62 E-value=0.0032 Score=53.73 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=23.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHh
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLL 181 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~ 181 (377)
+++|+++.|.|++|+|||||+.-++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999986665
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.61 E-value=0.0024 Score=55.04 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPS 187 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~ 187 (377)
.+.+.||+|+||||+.++|+.-+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCC
Confidence 36799999999999999999877644
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.61 E-value=0.0027 Score=54.38 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 017091 163 VAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+.+.||+|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999753
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.59 E-value=0.0033 Score=54.15 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=22.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHh
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLL 181 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~ 181 (377)
+++|+++.|.||+|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999986443
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.55 E-value=0.0046 Score=50.02 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987664
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.54 E-value=0.0036 Score=51.04 Aligned_cols=30 Identities=27% Similarity=0.279 Sum_probs=26.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
..++|.++++.|+=|||||||.|.++.-+-
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 346899999999999999999999986553
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.51 E-value=0.0031 Score=57.18 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.-+.++||+|||||+|.|.|+..+
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhcc
Confidence 455689999999999999999865
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.50 E-value=0.0057 Score=50.81 Aligned_cols=32 Identities=31% Similarity=0.313 Sum_probs=26.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 181 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~ 181 (377)
.++.-.+.+ .|.-+.|.|+||+|||||.-.+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 466666666 78899999999999999997665
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.45 E-value=0.0039 Score=51.50 Aligned_cols=21 Identities=38% Similarity=0.600 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987774
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.0039 Score=51.00 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|++|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4789999999999999987653
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.45 E-value=0.0041 Score=54.83 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+..-+.+.||+|||||++++.|+..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHc
Confidence 33567899999999999999999765
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.44 E-value=0.0035 Score=54.08 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 017091 163 VAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+.+.||.|+||||+++++++.+
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5699999999999999999754
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.44 E-value=0.0024 Score=54.80 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=17.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHh
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLL 181 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~ 181 (377)
+-.+++++||+|+||||.+-=|+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999998764444
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.43 E-value=0.0045 Score=53.62 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCCCCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEPSDG 189 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p~~G 189 (377)
..+.|.||.|+||||+++.++..++...+
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 57899999999999999999987754433
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.42 E-value=0.0041 Score=50.63 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++++|++|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 47899999999999999998754
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.42 E-value=0.0041 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++|+|++|+|||||++-+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999888753
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.40 E-value=0.004 Score=51.45 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q 017091 163 VAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~g 182 (377)
++|+|+.|+|||||++-+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 88999999999999988875
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.33 E-value=0.0053 Score=49.66 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.++++|++|+|||||++.+.+-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999987753
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.27 E-value=0.0044 Score=49.97 Aligned_cols=21 Identities=14% Similarity=0.407 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.26 E-value=0.005 Score=49.66 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|+.|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999997764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.26 E-value=0.0063 Score=49.71 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+.++|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 47899999999999999998754
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.26 E-value=0.0058 Score=49.71 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++|+|+.|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998875
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.23 E-value=0.0048 Score=51.74 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998655
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.22 E-value=0.0047 Score=55.35 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877543
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.22 E-value=0.0048 Score=53.12 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
++||+|+..||||||++.|.+-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999874
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.009 Score=49.13 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|++|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999997765
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.0052 Score=49.79 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++|+|++|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987765
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.0063 Score=49.66 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q 017091 163 VAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~g 182 (377)
++++|++|+|||||++-+..
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 88999999999999977654
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.13 E-value=0.0057 Score=49.56 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++|+|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999988874
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.13 E-value=0.0051 Score=50.38 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
.+.|+|++|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999887753
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.12 E-value=0.0058 Score=49.51 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++|+|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997764
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.11 E-value=0.011 Score=48.07 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.+.++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998775
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=95.06 E-value=0.0033 Score=51.75 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|++|+|||||++-+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998754
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.04 E-value=0.0061 Score=49.93 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999998875
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.03 E-value=0.0054 Score=53.67 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
-+.+.||.|||||++++.|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 4779999999999999999864
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.98 E-value=0.0065 Score=50.08 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++|+|.+|+|||||++-+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999987764
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.98 E-value=0.006 Score=54.14 Aligned_cols=49 Identities=31% Similarity=0.394 Sum_probs=33.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh---hCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 017091 162 VVAIVGLSGSGKSTFVNLLL---RLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 212 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~---gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 212 (377)
.++|+|+.|||||||+..|+ |.. ...|++. +|..+.++.+.+..+++++
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~-~~~g~v~-~g~~~~D~~~~E~~r~~ti 55 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAK-ERRGRVE-EGTTTTDYTPEAKLHRTTV 55 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCGG-GTCCSSCCSHHHHHTTSCC
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCc-hhhccch-hccccccchHHHHHhCCeE
Confidence 47999999999999999884 433 3456653 5555556666665555543
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.96 E-value=0.0059 Score=57.37 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.++-.+.|.||.||||||++..+.....
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 4566899999999999999999988654
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.96 E-value=0.006 Score=53.91 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=24.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+++..-+.|.||+|+|||+|++.+++.+
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 4445568899999999999999999876
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.96 E-value=0.0059 Score=52.09 Aligned_cols=44 Identities=16% Similarity=0.304 Sum_probs=29.3
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
+.+++++||.-. +....+..+...+... .....+++++++.+.+
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~----~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELY----SNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHT----TTTEEEEEEESCGGGS
T ss_pred ceEEEEEecccc-cchhHHHHHhhhcccc----ccceeeeeccCchhhh
Confidence 467999999764 4455555555555543 2456788888887654
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.94 E-value=0.0068 Score=49.18 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|+.|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999997664
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.92 E-value=0.0065 Score=49.62 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999987764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.92 E-value=0.0063 Score=50.77 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q 017091 163 VAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~g 182 (377)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999998774
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.89 E-value=0.0057 Score=54.77 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=27.6
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 154 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 154 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
=+.|.+|+..+|+|++|+|||||+..|+.-.
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999998744
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.84 E-value=0.0056 Score=52.37 Aligned_cols=25 Identities=40% Similarity=0.664 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.+++++||+|+||||.+-=|+..+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999987744554443
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.84 E-value=0.0069 Score=49.33 Aligned_cols=20 Identities=25% Similarity=0.634 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q 017091 163 VAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~g 182 (377)
++++|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999998764
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.83 E-value=0.0073 Score=51.45 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
..++.++||+|+||||.+-=|+..+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999998876666444
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.79 E-value=0.0081 Score=51.37 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh-hCCCCCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLL-RLYEPSDG 189 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~-gl~~p~~G 189 (377)
.+.|+|.+|+|||||++-+. +-..|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 67899999999999998764 55668877
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.78 E-value=0.0072 Score=55.09 Aligned_cols=23 Identities=43% Similarity=0.543 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl 183 (377)
-++||+||.|||||||+..|...
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEeeeCCCCCCHHHHHHHHHHH
Confidence 47999999999999999988864
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.78 E-value=0.0069 Score=49.75 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeE
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 191 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I 191 (377)
.+.++|..|+|||||++-+..-..|+.|-.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 478999999999999998876667787743
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.75 E-value=0.014 Score=48.26 Aligned_cols=32 Identities=31% Similarity=0.174 Sum_probs=24.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 017091 149 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 181 (377)
Q Consensus 149 vL~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~ 181 (377)
.++.-.+ .-.|.-+.|.|+||+|||||.-.+.
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHH
Confidence 4454444 3457889999999999999987655
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.71 E-value=0.011 Score=47.91 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|+.|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999988874
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.64 E-value=0.0077 Score=51.24 Aligned_cols=44 Identities=18% Similarity=0.344 Sum_probs=30.9
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
+.+++++||.- .+.......+...+.+.. ....++++|++...+
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~----~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYT----KNTRFCVLANYAHKL 142 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTT----TTEEEEEEESCGGGS
T ss_pred CeEEEEEeccc-cchhhHHHHHHHHhhhcc----cceeeccccCcHHHh
Confidence 35799999974 677777777777777652 345567777776654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.61 E-value=0.0052 Score=50.11 Aligned_cols=21 Identities=43% Similarity=0.670 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|++|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987643
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.60 E-value=0.015 Score=47.75 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.+.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999976653
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=94.58 E-value=0.0095 Score=48.36 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++|+|..|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998764
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.57 E-value=0.0056 Score=49.96 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=9.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999986654
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.57 E-value=0.0096 Score=48.28 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++|+|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997654
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=94.57 E-value=0.0057 Score=49.88 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+.++|++|+|||||++.+.+-.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999887533
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.54 E-value=0.0093 Score=51.26 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
++||+|+-||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999954
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.49 E-value=0.009 Score=52.79 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=31.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCC-CCCCCeEEECCEe
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLY-EPSDGQIYIDGFP 197 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~-~p~~G~I~i~g~~ 197 (377)
-+++|.++-|.||+|||||||+-.++.-. ++..--+++|...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence 48899999999999999999986666544 3433346666653
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.47 E-value=0.01 Score=47.90 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|.+|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998764
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.42 E-value=0.011 Score=51.85 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
-+.+.||+|||||+|++.++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 37899999999999999999854
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.41 E-value=0.01 Score=49.10 Aligned_cols=28 Identities=32% Similarity=0.578 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh--hCCCCCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLL--RLYEPSDG 189 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~--gl~~p~~G 189 (377)
.+.|+|.+|+|||||++-+. --+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 57899999999999999873 22468888
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.39 E-value=0.01 Score=48.95 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++|+|.+|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999987663
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=94.17 E-value=0.0061 Score=55.46 Aligned_cols=26 Identities=38% Similarity=0.408 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYEP 186 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~p 186 (377)
--+.|+||.|+|||||+|.+.++++|
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 35789999999999999999999976
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.14 E-value=0.02 Score=47.03 Aligned_cols=31 Identities=35% Similarity=0.235 Sum_probs=23.2
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 017091 150 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 181 (377)
Q Consensus 150 L~~isl~i~~Ge~~~ivG~nGsGKSTLl~~l~ 181 (377)
++. ++-.-.|.-+.|.|+||+|||||.-.+.
T Consensus 6 ~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 6 LHG-VLVDVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EES-EEEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEE-EEEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence 444 3334568899999999999999885554
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.10 E-value=0.01 Score=56.45 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
-+.++||+|||||-|.|.|++++.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999774
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.06 E-value=0.013 Score=48.54 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
.++++|++|+|||||++-+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999977653
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.01 E-value=0.015 Score=48.37 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 017091 163 VAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999864
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.00 E-value=0.009 Score=51.89 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
++.|.||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999998765
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.97 E-value=0.012 Score=52.45 Aligned_cols=24 Identities=50% Similarity=0.513 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
-+++|+||-++|||||++.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999864
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.80 E-value=0.014 Score=51.78 Aligned_cols=54 Identities=26% Similarity=0.377 Sum_probs=36.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCe-EEECCEeCCCCCHHHHhcceEE
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGFPLTDLDIRWLREKIGF 212 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~-I~i~g~~i~~~~~~~~r~~i~~ 212 (377)
-++.|.++-|.||+|||||||+-.++.......|. |+||... .+++... +++|.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a-~~~Gv 110 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYA-KKLGV 110 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHH-HHHTC
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHH-HHhCC
Confidence 47899999999999999999976666555444555 5556653 2444433 33453
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.78 E-value=0.013 Score=52.11 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++++|.-.||||||++.|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999965
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.77 E-value=0.016 Score=51.48 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh---hCCCCCCCeEEECCEeCCCCCHHHHhcceEE
Q 017091 162 VVAIVGLSGSGKSTFVNLLL---RLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 212 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~---gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 212 (377)
-+||+|+.|||||||+-.|+ |..+ ..|++. +|..+.+..+.+..+++++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si 59 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITI 59 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc-ccccee-cCceEEeccHHHHhcCCcc
Confidence 47999999999999998884 5443 345553 3333333444444444443
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.73 E-value=0.015 Score=51.53 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=31.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCe-EEECCE
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGF 196 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~-I~i~g~ 196 (377)
-++.|.++-|.||+|||||||.-.++...+-..|. ++||..
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence 47899999999999999999998877665433343 455554
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.71 E-value=0.015 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.++++|.-.||||||++.|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999975
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.61 E-value=0.019 Score=50.83 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=30.0
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhhC-CCCCCCeEEE
Q 017091 154 CLTIEANEVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYI 193 (377)
Q Consensus 154 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl-~~p~~G~I~i 193 (377)
=+.+-+|+..+|.|++|+|||||+..++.- .+.+.+-+.+
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~ 102 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 102 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEE
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEE
Confidence 367999999999999999999998777643 3333443333
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.59 E-value=0.017 Score=49.48 Aligned_cols=25 Identities=44% Similarity=0.611 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.+++|=|+-||||||+++.|.-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999987553
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=93.07 E-value=0.024 Score=52.34 Aligned_cols=30 Identities=30% Similarity=0.329 Sum_probs=26.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 156 TIEANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 156 ~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.++++..+.+.||.|+||||+.+.|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 346788999999999999999999999875
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.00 E-value=0.025 Score=47.73 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 017091 162 VVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~g 182 (377)
-+||+|+.++|||||+..|+.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 379999999999999999864
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.92 E-value=0.026 Score=50.99 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
..+.++||+|+|||.|.+.|+..+.
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCcchhHHHHHHHHhhcc
Confidence 3578999999999999999998763
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.82 E-value=0.023 Score=51.04 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
.+||||..-+|||||++.|.|--
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred cEeEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999998853
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.71 E-value=0.034 Score=49.52 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhC
Q 017091 161 EVVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 161 e~~~ivG~nGsGKSTLl~~l~gl 183 (377)
=.+||||..-||||||++.|++-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 35999999999999999999975
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.62 E-value=0.03 Score=45.80 Aligned_cols=28 Identities=32% Similarity=0.539 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC---CCCCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL---YEPSDG 189 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl---~~p~~G 189 (377)
.+.++|..|+|||||++-+..- +.|+-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 4789999999999999888643 345656
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.13 E-value=0.038 Score=48.70 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhh
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~g 182 (377)
..+++|+|.-|.|||||++.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998864
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.05 E-value=0.043 Score=45.92 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
-+||+|.-.+|||||+..|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 589999999999999999998653
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.05 E-value=0.027 Score=52.47 Aligned_cols=40 Identities=25% Similarity=0.207 Sum_probs=27.4
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH
Q 017091 290 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 290 illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
++++||.-+-..... +.+.+.+.+ +.|..+++++++++.+
T Consensus 279 ~l~lDE~~~~~~~~~---l~~~l~~~R---k~Gv~~~l~~Qs~~ql 318 (433)
T d1e9ra_ 279 WLFIDELASLEKLAS---LADALTKGR---KAGLRVVAGLQSTSQL 318 (433)
T ss_dssp EEEESCGGGSCBCSS---HHHHHHHCT---TTTEEEEEEESCHHHH
T ss_pred EEEechHhhhcccHH---HHHHHHHhC---CCCceEEEEeccHHHH
Confidence 678899766444222 445566554 3599999999998765
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.89 E-value=0.033 Score=47.52 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRL 183 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl 183 (377)
++.|.|.=|||||||++-++.-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6789999999999999998874
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.88 E-value=0.04 Score=46.71 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=33.1
Q ss_pred cCCCCEEEEeCcCCCC-CHHHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 017091 285 LRDPAILLLDEATSAL-DSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 332 (377)
Q Consensus 285 ~~~p~illlDEPts~L-D~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l 332 (377)
+.+.++|++|+--.=. ++..+..+..++..+.+ .|+.+|+++...
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~---~~~~iiits~~~ 140 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL---LEKQIILASDRH 140 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH---TTCEEEEEESSC
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhh---ccceEEEecCCc
Confidence 4589999999975433 56778888998888764 467777777643
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=91.78 E-value=0.04 Score=48.76 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=30.4
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE
Q 017091 154 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 193 (377)
Q Consensus 154 sl~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i 193 (377)
=+.+-+|+..+|+|++|+|||+|+..+..-..-+...+.+
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~ 100 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVY 100 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEE
T ss_pred cccccCCceEeeccCCCCChHHHHHHHHhhhcccCceeee
Confidence 3589999999999999999999998665544444444434
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=91.75 E-value=0.034 Score=50.32 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=22.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 155 LTIEANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 155 l~i~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
...++| .+.++||.|+|||.|.+.|++..
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 444544 56668999999999999999864
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.46 E-value=0.052 Score=47.81 Aligned_cols=33 Identities=39% Similarity=0.556 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC-----------CCCCCeEEEC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY-----------EPSDGQIYID 194 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~-----------~p~~G~I~i~ 194 (377)
.+||||-.-+|||||++.|++-- .|.-|.|.+.
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~ 47 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMP 47 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECC
T ss_pred eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecc
Confidence 68999999999999999999653 3455777554
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.37 E-value=0.049 Score=46.69 Aligned_cols=43 Identities=14% Similarity=0.140 Sum_probs=32.6
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH
Q 017091 288 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 288 p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
.+++|+||.=. |+......+++.+.+. ..+..+|++|++++-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~----~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEP----PEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSC----CTTEEEEEEESCGGGS
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcC----CCCeEEEEEcCCcccc
Confidence 56999999954 8888877777777643 2467889999998764
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=91.10 E-value=0.08 Score=48.02 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDG 189 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G 189 (377)
.+.|=|+-||||||+++.|..-+....+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~ 35 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSP 35 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSC
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCC
Confidence 5788899999999999999987765433
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.95 E-value=0.052 Score=45.61 Aligned_cols=44 Identities=7% Similarity=0.138 Sum_probs=30.6
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
+.+++|+||+ -.|...+...+++.+.+- ..+..+|++|++++-+
T Consensus 108 ~~kviIide~-d~l~~~a~n~Llk~lEep----~~~~~fIl~t~~~~~l 151 (207)
T d1a5ta2 108 GAKVVWVTDA-ALLTDAAANALLKTLEEP----PAETWFFLATREPERL 151 (207)
T ss_dssp SCEEEEESCG-GGBCHHHHHHHHHHHTSC----CTTEEEEEEESCGGGS
T ss_pred ccceEEechh-hhhhhhhhHHHHHHHHhh----cccceeeeeecChhhh
Confidence 4789999986 345666666666666553 2355678899998754
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=90.26 E-value=0.075 Score=44.37 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 017091 163 VAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+||+|.-++|||||++.|.+..
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHH
Confidence 7999999999999999998754
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.99 E-value=0.078 Score=46.60 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
-+.||||+|+|||+++.-++..+
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 56799999999999999888654
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=89.95 E-value=0.033 Score=42.62 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=18.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHH
Q 017091 157 IEANEVVAIVGLSGSGKSTFV 177 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl 177 (377)
+++|+.+.|.+|.|||||+.+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 467999999999999999544
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.85 E-value=0.086 Score=44.03 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
-+.||||+|.|||+++.-|+...
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHH
Confidence 46799999999999999888654
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=89.66 E-value=0.091 Score=47.61 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=25.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCeEEE
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 193 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~p~~G~I~i 193 (377)
.++|=|+=||||||+++.|.-.+......+.+
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~ 38 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILL 38 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCceEE
Confidence 48899999999999999999877644334444
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=89.64 E-value=0.074 Score=48.87 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 017091 163 VAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+..+||+|+|||-|.|.|+.+.
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eeeeCCCCccHHHHHHHHHhhc
Confidence 5577999999999999999876
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=89.53 E-value=0.082 Score=47.52 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-CCCCeEEECCEe
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFP 197 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~-p~~G~I~i~g~~ 197 (377)
.+.++||+|+|||.|.+.|+..+. ....-+.+|...
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~ 91 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 91 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 567999999999999999998752 223345565533
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.41 E-value=0.058 Score=47.88 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=24.8
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 017091 153 VCLTIEANEVVAIVGLSGSGKSTFVNLLL 181 (377)
Q Consensus 153 isl~i~~Ge~~~ivG~nGsGKSTLl~~l~ 181 (377)
.-+.+-+|+..+|.|++|+|||||+.-+.
T Consensus 61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 34689999999999999999999986444
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=88.59 E-value=0.099 Score=47.30 Aligned_cols=24 Identities=42% Similarity=0.436 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 162 VVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
.++|=|+-||||||+++.|...+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 478999999999999999986553
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=88.26 E-value=0.11 Score=43.94 Aligned_cols=38 Identities=11% Similarity=0.234 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCCCEEE----EeCcCCCCCHHHHHHHHHHHHHh
Q 017091 277 RIAIARAILRDPAILL----LDEATSALDSESEHYVKGVLHAL 315 (377)
Q Consensus 277 Rv~iAral~~~p~ill----lDEPts~LD~~~~~~i~~~l~~l 315 (377)
.+.+++++ ..|++++ +|.+...-|....+.+.+.+..+
T Consensus 132 ~l~~~~~~-~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~ 173 (224)
T d1jnya3 132 HIILAKTM-GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKF 173 (224)
T ss_dssp HHHHHHHT-TCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCceEEEEEcccCCCccccHHHHHHHHHHHHhH
Confidence 45666655 5667777 69888778876666666666554
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=88.24 E-value=0.11 Score=45.55 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=26.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCCCCCCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 189 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~~p~~G 189 (377)
++--++.+.||.++||||++++|..++ +.-|
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~ 132 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAHTV-PFYG 132 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS-SCEE
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHHHh-cchh
Confidence 455688999999999999999999988 4443
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=87.73 E-value=0.14 Score=43.42 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 017091 163 VAIVGLSGSGKSTFVNLLL 181 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~ 181 (377)
++++|.-.+|||||+..|+
T Consensus 12 i~viGHVd~GKSTL~~~Ll 30 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLL 30 (222)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999995
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=86.82 E-value=0.2 Score=44.80 Aligned_cols=19 Identities=42% Similarity=0.763 Sum_probs=17.1
Q ss_pred CCcEEEEEcCCCCcHHHHH
Q 017091 159 ANEVVAIVGLSGSGKSTFV 177 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl 177 (377)
.|++..+-|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 4789999999999999975
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=86.81 E-value=0.29 Score=44.54 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=17.3
Q ss_pred CCcEEEEEcCCCCcHHHHHH
Q 017091 159 ANEVVAIVGLSGSGKSTFVN 178 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~ 178 (377)
.+.++.|.||.|+||||++.
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~ 181 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVA 181 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHH
Confidence 35799999999999999874
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=86.80 E-value=0.14 Score=45.74 Aligned_cols=20 Identities=45% Similarity=0.778 Sum_probs=17.7
Q ss_pred eCCcEEEEEcCCCCcHHHHH
Q 017091 158 EANEVVAIVGLSGSGKSTFV 177 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl 177 (377)
+.|++..+-|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 35889999999999999976
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=86.59 E-value=0.13 Score=39.47 Aligned_cols=33 Identities=21% Similarity=0.133 Sum_probs=23.9
Q ss_pred HHcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhh
Q 017091 283 AILRDPAILLLDEATSALDSESEHYVKGVLHALR 316 (377)
Q Consensus 283 al~~~p~illlDEPts~LD~~~~~~i~~~l~~l~ 316 (377)
..+.+-+++|+||.- .+|..+...+...++.++
T Consensus 90 ~~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~~ 122 (136)
T d1a1va1 90 CSGGAYDIIICDECH-STDATSILGIGTVLDQAE 122 (136)
T ss_dssp GGGCCCSEEEEETTT-CCSHHHHHHHHHHHHHTT
T ss_pred hhhhcCCEEEEeccc-ccCHHHHHHHHHHHHHHH
Confidence 345678999999996 468877666666666553
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.83 E-value=0.22 Score=38.04 Aligned_cols=38 Identities=8% Similarity=0.019 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHh-hCCCCCCC-eEE-ECCE
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDG-QIY-IDGF 196 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l~-gl~~p~~G-~I~-i~g~ 196 (377)
.|=.+.+.|-+||||||+.+.|. .|.+-..| .|. +||.
T Consensus 5 qgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ 45 (122)
T d1g8fa3 5 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN 45 (122)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCC
Confidence 46678899999999999999984 55553333 354 3443
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=85.44 E-value=0.26 Score=42.89 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEPS 187 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p~ 187 (377)
+-.++|+|..-+|||||++.|.|-....
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~~~~ 139 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKNIAK 139 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred ceEEEEEecCccchhhhhhhhhccceEE
Confidence 3459999999999999999999965433
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=85.22 E-value=0.13 Score=44.99 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=20.4
Q ss_pred EeCCcEEEEEcCCCCcHHH--HHHHHhh
Q 017091 157 IEANEVVAIVGLSGSGKST--FVNLLLR 182 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKST--Ll~~l~g 182 (377)
+.+|+.+.|.+|+|||||+ |..++..
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~ 33 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVRE 33 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 5689999999999999997 3344433
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.82 E-value=0.23 Score=42.61 Aligned_cols=20 Identities=40% Similarity=0.519 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 017091 162 VVAIVGLSGSGKSTFVNLLL 181 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl~~l~ 181 (377)
-++|+|..++|||||+..|+
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 36899999999999998774
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=84.58 E-value=0.22 Score=44.66 Aligned_cols=19 Identities=42% Similarity=0.758 Sum_probs=17.5
Q ss_pred CCcEEEEEcCCCCcHHHHH
Q 017091 159 ANEVVAIVGLSGSGKSTFV 177 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl 177 (377)
.|++..+-|-||+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 5788899999999999997
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=84.50 E-value=0.19 Score=44.29 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=13.6
Q ss_pred EEEEEcCCCCcHHHHH
Q 017091 162 VVAIVGLSGSGKSTFV 177 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl 177 (377)
.+.|.|+.||||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4678999999999865
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=84.10 E-value=0.23 Score=43.21 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=13.6
Q ss_pred EEEEEcCCCCcHHHHH
Q 017091 162 VVAIVGLSGSGKSTFV 177 (377)
Q Consensus 162 ~~~ivG~nGsGKSTLl 177 (377)
-+.|+|+-||||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 4679999999999764
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=84.10 E-value=0.17 Score=42.33 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=25.9
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhhCCC
Q 017091 157 IEANEVVAIVGLSGSGKSTFVNLLLRLYE 185 (377)
Q Consensus 157 i~~Ge~~~ivG~nGsGKSTLl~~l~gl~~ 185 (377)
+++-.++.+.||.++|||++...|+.++.
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence 46678999999999999999999999873
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.90 E-value=0.15 Score=43.24 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=17.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHH
Q 017091 159 ANEVVAIVGLSGSGKSTFVNLL 180 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl~~l 180 (377)
.|+-+.|++|.|+|||+..-+.
T Consensus 57 ~g~~~~i~apTGsGKT~~~~~~ 78 (237)
T d1gkub1 57 RKESFAATAPTGVGKTSFGLAM 78 (237)
T ss_dssp TTCCEECCCCBTSCSHHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHHH
Confidence 5788889999999999765443
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=83.29 E-value=0.41 Score=41.04 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhCCCC
Q 017091 160 NEVVAIVGLSGSGKSTFVNLLLRLYEP 186 (377)
Q Consensus 160 Ge~~~ivG~nGsGKSTLl~~l~gl~~p 186 (377)
+.-+.|.||.|+||+++.+.|-..-+.
T Consensus 23 ~~pvlI~Ge~GtGK~~~A~~ih~~s~~ 49 (247)
T d1ny5a2 23 ECPVLITGESGVGKEVVARLIHKLSDR 49 (247)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhcCC
Confidence 456889999999999999999865443
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=83.20 E-value=0.36 Score=37.70 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCcHHH-HHHHHhhC
Q 017091 160 NEVVAIVGLSGSGKST-FVNLLLRL 183 (377)
Q Consensus 160 Ge~~~ivG~nGsGKST-Ll~~l~gl 183 (377)
|.+..|+||=.||||| |++.+-..
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~ 26 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRL 26 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHHH
Confidence 6788999999999999 77776554
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.09 E-value=0.23 Score=44.93 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 017091 163 VAIVGLSGSGKSTFVNLLL 181 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~ 181 (377)
+||+|+-|+|||||+..|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHH
Confidence 8999999999999999885
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=82.99 E-value=0.31 Score=48.28 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+..+.+.|.|+||||||+-.|.|+..+
T Consensus 84 ~~~QsIiisGeSGsGKTe~~k~il~yL 110 (684)
T d1lkxa_ 84 QENQCVIISGESGAGKTEASKKIMQFL 110 (684)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999886654
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.94 E-value=0.35 Score=40.02 Aligned_cols=44 Identities=5% Similarity=0.147 Sum_probs=34.0
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEEecCchhH
Q 017091 287 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 335 (377)
Q Consensus 287 ~p~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~g~tvi~itH~l~~~ 335 (377)
+.+|+|+||+ -.|...++..+++.|.+- ..+...|++|++++.+
T Consensus 79 ~~KviIId~a-d~l~~~aqNaLLK~LEEP----p~~t~fiLit~~~~~l 122 (198)
T d2gnoa2 79 TRKYVIVHDC-ERMTQQAANAFLKALEEP----PEYAVIVLNTRRWHYL 122 (198)
T ss_dssp SSEEEEETTG-GGBCHHHHHHTHHHHHSC----CTTEEEEEEESCGGGS
T ss_pred CCEEEEEeCc-cccchhhhhHHHHHHhCC----CCCceeeeccCChhhC
Confidence 4699999996 567888888888877764 2466789999998754
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=82.70 E-value=0.24 Score=42.62 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 017091 163 VAIVGLSGSGKSTFVNLLL 181 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~ 181 (377)
++|+|.-++|||||+..|.
T Consensus 27 i~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEECGGGTHHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHHH
Confidence 7999999999999998883
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=82.53 E-value=0.32 Score=48.46 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
...+.+.|.|+||||||.-.|.++..+
T Consensus 123 ~~nQsIiisGeSGaGKTe~~k~il~yL 149 (712)
T d1d0xa2 123 RQNQSLLITGESGAGKTENTKKVIQYL 149 (712)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999997765
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=82.30 E-value=0.26 Score=45.43 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=16.5
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q 017091 163 VAIVGLSGSGKSTFVNLLLR 182 (377)
Q Consensus 163 ~~ivG~nGsGKSTLl~~l~g 182 (377)
..||||+|.|||+++.-|+.
T Consensus 46 ~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHH
T ss_pred CeEECCCCCCHHHHHHHHHH
Confidence 46899999999999875553
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=81.04 E-value=0.38 Score=47.85 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhhCC
Q 017091 158 EANEVVAIVGLSGSGKSTFVNLLLRLY 184 (377)
Q Consensus 158 ~~Ge~~~ivG~nGsGKSTLl~~l~gl~ 184 (377)
+..+.+.|.|+||||||+-.|.|+..+
T Consensus 89 ~~~Q~IiisGeSGaGKTe~~k~il~yL 115 (710)
T d1br2a2 89 REDQSILCTGESGAGKTENTKKVIQYL 115 (710)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999887665
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.29 E-value=0.16 Score=41.84 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=15.6
Q ss_pred CCcEEEEEcCCCCcHHHHH
Q 017091 159 ANEVVAIVGLSGSGKSTFV 177 (377)
Q Consensus 159 ~Ge~~~ivG~nGsGKSTLl 177 (377)
.|+-+.|.+|+|||||+..
T Consensus 39 ~~~~~il~apTGsGKT~~a 57 (202)
T d2p6ra3 39 SGKNLLLAMPTAAGKTLLA 57 (202)
T ss_dssp TCSCEEEECSSHHHHHHHH
T ss_pred cCCCEEEEcCCCCchhHHH
Confidence 4566789999999999864
|