Citrus Sinensis ID: 017118

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------
Protein Sequence
MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCTVKCPSSGETADDIKMKKAENAGCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE
Secondary Structure (PSIPRED)
ccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccEEEEccccHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEEEccccEEcccccccccccccEEEEEEEEccccccEEEEEEccccccccccccEEEEEEccccccEEEEEcccccccccccccccccccccccccccccccccEEEccEEEEEEcccccccccEEEEEEccccccccccccccccccccEEEEEccccccccccccEEEccccccccccEEEEEEEEccccccccccccccEEEEEEEEEcccEEEEEccccccHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEcccccccccccccEEEcccccccccccccccccccccHHHHcccccccccHHHHHHHHHHHHccccccccccHEEHHHHHHHHHHHHHHHHHccccccccEEccEEcccccccccEEEEEEEEccccccEEEEccccHHHcccEEEEEEEEEEEccccEEEEEEccHHHHccccccccEEEEEcccccEEEEEcccccccccccccccccEEEcccEcccccccccEEEEEEEEEEEccccccccEEEEEEEcccccccccccccccccccccEEEEEcccEEEccccEEEEEEccEEEEcEccEEEEEEcccccccccccccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mslrnsclsrrisrsfgeahkssketglgaaddsvvssttsasmdsgaaaahssgswagLLPELLGEIIRRVettedswphrqnvvACACVCKRWREITKDivkspflsgkitfpsclkqpgprefphqclirrnkkTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLdagdlsqgsnayvgklssdflgtnftiydsrpphngakpsssrgsrrfaskqispqvpagnfevGQVSYKFNllksrgprrmvctvkcpssgetaddikmkkaenagctilrnksprwhEHLQCWCLNFHGRVTVASVKNFQLVAtvdqsqpggkgdeETVLLQFgkvgddiftmdyrqplSAFQAFAICLTSFGTKLACE
Flexible Loop (DISEMBL)
mslrnsclsrrisrsfgeahkssketglgaaddSVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRVEttedswphrqnvVACACVCKRWREITKdivkspflsgkitfpsclkqpgpREFPHQCLIRRNKKTSTFYLYLAltpsfsekGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTiydsrpphngakpsssrgsRRFASKqispqvpagnfevGQVSYKFnllksrgprrmvctvkcpssgetaddikmkKAENAGCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATvdqsqpggkgdEETVLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE
Low Complexity Region (SEG)
MSLRNSCLSRRISRSFGEAHKSSKETGLGaaddsvvssttsasmdsgaaaahssgswagLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCTVKCPSSGETADDIKMKKAENAGCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE
Disordered region (IsUnstruct)
********************************************************WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIY********************************NFEVGQVSYKFNLLKSRGPRRMVCTVKC****************NAGCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVD**********ETVLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKL***
Disordered Region (DISOPRED)
***************************************************************LLG*****************NVVACACVCKRWR*****************FPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPP****************************FEVGQVSYKFNLLKSRGPRRM**TVK********************CTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVA**************TVLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE
Disordered Region (DISEMBL)
********SRRISRS***************************************GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPP*******************ISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCTVKCPSSGETADDIKMKKAENAGCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE
Disordered Region (DISPRO)
*SLRNSCLSRRISRSFGEAHKSSKE*G*************************SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCTVKCPSSG****DIKMK***NAGCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQ*****KGDEETVLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLAC*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCTVKCPSSGETADDIKMKKAENAGCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	377	2.2.26 [Sep-21-2011]
Q93VI8	379	Tubby-like F-box protein	yes	no	0.965	0.960	0.716	1e-157
Q68Y48	372	Tubby-like F-box protein	yes	no	0.851	0.862	0.697	1e-134
Q5QM27	356	Tubby-like F-box protein	no	no	0.851	0.901	0.718	1e-131
Q688Y7	352	Tubby-like F-box protein	no	no	0.843	0.903	0.674	1e-130
Q94DT9	368	Tubby-like F-box protein	no	no	0.835	0.855	0.580	1e-107
Q8H485	406	Tubby-like F-box protein	no	no	0.875	0.812	0.515	1e-104
Q10LG8	403	Tubby-like F-box protein	no	no	0.846	0.791	0.522	1e-103
Q8VY21	406	Tubby-like F-box protein	no	no	0.912	0.847	0.485	1e-102
Q6Z2G9	428	Tubby-like F-box protein	no	no	0.854	0.752	0.513	1e-100
Q8GVE5	394	Tubby-like F-box protein	no	no	0.843	0.807	0.518	6e-96

>sp|Q93VI8|TLP7_ARATH Tubby-like F-box protein 7 OS=Arabidopsis thaliana GN=TULP7 PE=2 SV=1

 Score =  555 bits (1430), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 281/392 (71%), Positives = 309/392 (78%), Gaps = 28/392 (7%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           M L  S LSRRIS SF   H+   ET      +S+   +  A           S SW+ +
Sbjct: 1   MPLSRSLLSRRISNSF-RFHQG--ETTTAPESESIPPPSNMAG----------SSSWSAM 47

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPELLGEIIRRVE TED WP R++VV CACV K+WREIT D  +S   SGKITFPSCLK 
Sbjct: 48  LPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKITFPSCLKL 107

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGD 180
           PGPR+F +QCLI+RNKKTSTFYLYLALTPSF++KGKFLLAARR+R GA++EYIISLDA D
Sbjct: 108 PGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISLDADD 167

Query: 181 LSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAGNFEV 240
            SQGSNAYVGKL SDFLGTNFT+YDS+PPHNGAKPS+ + SRRFASKQISPQVPAGNFEV
Sbjct: 168 FSQGSNAYVGKLRSDFLGTNFTVYDSQPPHNGAKPSNGKASRRFASKQISPQVPAGNFEV 227

Query: 241 GQVSYKFNLLKSRGPRRMVCTVKCP-----------SSGETADDIK--MKKAENAG--CT 285
           G VSYKFNLLKSRGPRRMV T++CP           SS +   D+   MKK    G   T
Sbjct: 228 GHVSYKFNLLKSRGPRRMVSTLRCPSPSPSSSSAGLSSDQKPCDVTKIMKKPNKDGSSLT 287

Query: 286 ILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVG 345
           IL+NK+PRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQP GKGDEETVLLQFGKVG
Sbjct: 288 ILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPSGKGDEETVLLQFGKVG 347

Query: 346 DDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
           DD FTMDYRQPLSAFQAFAICLTSFGTKLACE
Sbjct: 348 DDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 379

Arabidopsis thaliana (taxid: 3702)

>sp|Q68Y48|TLP9_ORYSJ Tubby-like F-box protein 9 OS=Oryza sativa subsp. japonica GN=TULP9 PE=2 SV=1

 Score =  478 bits (1229), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 224/321 (69%), Positives = 255/321 (79%)

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPS 116
           W+ LLPELL EI+RRV+   + WP R++VVACACVC+RWR+    +V+ P   G+ITFPS
Sbjct: 52  WSRLLPELLTEIMRRVDAGAERWPPRRDVVACACVCRRWRDAAVSVVRPPLECGRITFPS 111

Query: 117 CLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISL 176
            LKQPGPR+ P  C IRRNKK STFYLYL+LT + ++KGKFLLAARR+R GAH+EYIIS 
Sbjct: 112 SLKQPGPRDAPMHCFIRRNKKNSTFYLYLSLTQALTDKGKFLLAARRFRNGAHTEYIISY 171

Query: 177 DAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAG 236
           D  DL  GSN+YVGKL SDFLGT F IYDS+PP++GAKPS S+ SRRFASKQI+P V  G
Sbjct: 172 DCDDLFPGSNSYVGKLRSDFLGTKFIIYDSQPPYDGAKPSRSQSSRRFASKQINPNVSGG 231

Query: 237 NFEVGQVSYKFNLLKSRGPRRMVCTVKCPSSGETADDIKMKKAENAGCTILRNKSPRWHE 296
           N+EVGQVSYKFN LKSRGPRRM C ++CP    TA D   K    +    LRNK+PRWHE
Sbjct: 232 NYEVGQVSYKFNFLKSRGPRRMQCNIQCPVGQSTASDPLKKLISTSSPLALRNKAPRWHE 291

Query: 297 HLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTMDYRQP 356
           HLQCWCLNFHGRVTVASVKNFQLVA    S P G  DEETV+LQFGK+ DD FTMDYRQP
Sbjct: 292 HLQCWCLNFHGRVTVASVKNFQLVAPAGTSDPWGIADEETVILQFGKIEDDAFTMDYRQP 351

Query: 357 LSAFQAFAICLTSFGTKLACE 377
           LSAFQAFAICLTSFGTKLACE
Sbjct: 352 LSAFQAFAICLTSFGTKLACE 372

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5QM27|TLP1_ORYSJ Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica GN=TULP1 PE=2 SV=1

 Score =  469 bits (1208), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/323 (71%), Positives = 271/323 (83%), Gaps = 2/323 (0%)

Query: 57  WAGLLPELLGEIIRRVETTE-DSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFP 115
           WA LLPEL+ E++RRVE +  + WP R++VV+CACVC+RWR+    +V+ P  SGKITFP
Sbjct: 34  WARLLPELMSEVVRRVEASGGERWPARKDVVSCACVCRRWRDAAVAVVRPPAESGKITFP 93

Query: 116 SCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIIS 175
           S LKQPGPREFP QC I+RNKK STFYLYL LT +  +KGKFL+AARR+RRG H+EYI+S
Sbjct: 94  SSLKQPGPREFPMQCFIKRNKKNSTFYLYLGLTNATVDKGKFLMAARRFRRGPHTEYIVS 153

Query: 176 LDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPA 235
           LDA DLSQGSNAY+GKL SDF GTNF IYDS+PP++GAK SSSR SRRF S++ISPQV A
Sbjct: 154 LDADDLSQGSNAYMGKLRSDFWGTNFKIYDSKPPYDGAKASSSRSSRRFGSRRISPQVSA 213

Query: 236 GNFEVGQVSYKFNLLKSRGPRRMVCTVKCPSSGETADD-IKMKKAENAGCTILRNKSPRW 294
           GN+EVGQVSYK+NLLKSRGPRRM C ++CPS+ ET ++ +K K  +  G T+LRNK+PRW
Sbjct: 214 GNYEVGQVSYKYNLLKSRGPRRMYCALECPSTQETWENCLKTKFRKPTGNTVLRNKAPRW 273

Query: 295 HEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTMDYR 354
           HEHLQCWCLNFHGRVTVASVKNFQLVA  D + P    DEETVLLQFGKV D+IFTMDYR
Sbjct: 274 HEHLQCWCLNFHGRVTVASVKNFQLVAAADPNDPASSKDEETVLLQFGKVDDNIFTMDYR 333

Query: 355 QPLSAFQAFAICLTSFGTKLACE 377
           QPLSAFQAFAI L+SFGTKLACE
Sbjct: 334 QPLSAFQAFAISLSSFGTKLACE 356

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q688Y7|TLP10_ORYSJ Tubby-like F-box protein 10 OS=Oryza sativa subsp. japonica GN=TULP10 PE=2 SV=1

 Score =  465 bits (1196), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/326 (67%), Positives = 264/326 (80%), Gaps = 8/326 (2%)

Query: 60  LLPELLGEIIRRVETTE-DSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCL 118
           LLPEL+ E++RRVE +  + WP R+++V+CACVC+RWRE    +V+    SG+ITFPS L
Sbjct: 27  LLPELVEEVVRRVEASGGERWPARKDLVSCACVCRRWREAAAAVVRPLPESGRITFPSSL 86

Query: 119 KQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDA 178
           KQPGP++FP QC ++RNKK S FYLYL L     +KGKFL+AARR+RRG H+EY+ISLDA
Sbjct: 87  KQPGPKDFPIQCFVKRNKKKSMFYLYLGLLNGTMDKGKFLMAARRFRRGPHTEYVISLDA 146

Query: 179 GDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSR------RFASKQISPQ 232
            DLSQGSNAYVGKL SDF GTNF IYD++PP++ AK SS+R S+      RF S++I PQ
Sbjct: 147 DDLSQGSNAYVGKLRSDFWGTNFKIYDNQPPYDDAKTSSTRSSQRFGSTHRFGSRRICPQ 206

Query: 233 VPAGNFEVGQVSYKFNLLKSRGPRRMVCTVKCPSSGETADD-IKMKKAENAGCTILRNKS 291
           + AGNF VGQ+SYK+NLLKSRGPRRM CT++CPS+ ET ++ +K K     G T+LRNK+
Sbjct: 207 ISAGNFNVGQISYKYNLLKSRGPRRMFCTMECPSTQETWENSLKTKSLRCTGTTVLRNKA 266

Query: 292 PRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTM 351
           PRWHEHLQCWCLNFHGRVTVASVKNFQLVAT D S P   GDEETV+LQFGKV  +IFTM
Sbjct: 267 PRWHEHLQCWCLNFHGRVTVASVKNFQLVATADPSHPDSVGDEETVILQFGKVDSNIFTM 326

Query: 352 DYRQPLSAFQAFAICLTSFGTKLACE 377
           DYRQPLSAFQAFAICL+SFGTKLACE
Sbjct: 327 DYRQPLSAFQAFAICLSSFGTKLACE 352

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94DT9|TLP2_ORYSJ Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1

 Score =  387 bits (995), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/322 (58%), Positives = 233/322 (72%), Gaps = 7/322 (2%)

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPS 116
           W+ L+P+LL +I+R VE   + WP R++VVACA VC+RWR++   +V+ P  SGKITFPS
Sbjct: 51  WSALVPDLLADILRCVEAGSERWPPRRDVVACASVCRRWRDVAVAVVQPPLESGKITFPS 110

Query: 117 CLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISL 176
            LKQPGPR+ P QC I+RNKK STF+LYL LT   ++  KFLLAARR RRG H EY I++
Sbjct: 111 SLKQPGPRDAPMQCFIKRNKKNSTFFLYLGLTQELTDDEKFLLAARRCRRGLHKEYAITI 170

Query: 177 DAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAG 236
           ++  L  GS + VG L S+F GT FTI D +PP+ GAK  SSR  R F +K   P V  G
Sbjct: 171 NSDGLFHGSQSCVGNLKSNFTGTKFTIRDWQPPYEGAKAFSSRSGRWFGNKHRCPLVSTG 230

Query: 237 NFEVGQVSYKFNLLKSRGPRRMVCTVKCPS-SGETADDIKMKKAENA--GCTILRNKSPR 293
           + EVG+VSYK++LL+ RGPRRM C+V+CP   G   D    K+  N+     +L +K P 
Sbjct: 231 DVEVGEVSYKYSLLRPRGPRRMSCSVQCPVLKGTAVDPQDGKRLSNSIPSSLVLNSKVPS 290

Query: 294 WHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTMDY 353
           WHEHLQCWCLNFHGRV VASVKNFQL+A V+  +P  K    TV+LQFGK+ DD+FTMDY
Sbjct: 291 WHEHLQCWCLNFHGRVMVASVKNFQLIAPVEPGEPSDK----TVVLQFGKIDDDVFTMDY 346

Query: 354 RQPLSAFQAFAICLTSFGTKLA 375
           RQPLSAFQAFAICL++FGTKLA
Sbjct: 347 RQPLSAFQAFAICLSNFGTKLA 368

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H485|TLP11_ORYSJ Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1

 Score =  377 bits (969), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/365 (51%), Positives = 243/365 (66%), Gaps = 35/365 (9%)

Query: 46  SGAAAAHSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKS 105
           S AA       W  L PELL E++ RVE +E  WP R++VVACA VC+ WR I ++IV++
Sbjct: 44  SAAALVMRESCWTQLPPELLREVLARVEESEGWWPRRRDVVACAGVCRSWRGIVREIVRT 103

Query: 106 PFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYR 165
           P  SG +TFP  LKQPGPR+ P +C I RN+ T T+YLY+ LT + ++ GKFLLAAR+ R
Sbjct: 104 PEASGNLTFPISLKQPGPRDAPMKCFIVRNRTTQTYYLYIGLTDALTDDGKFLLAARKCR 163

Query: 166 RGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFA 225
           R   +EY+ISLD  D+S+ +++YVGKL S+FLGT FTIYD+ PP+ G   S  + +R   
Sbjct: 164 RTTCTEYLISLDMNDISKRTDSYVGKLRSNFLGTKFTIYDAHPPYAGDVISKGQSARVIG 223

Query: 226 SKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCTVK-CPSSG---------------- 268
           S  +SP++PAGN+ V  +SY+ N+L SRGPRRM C +   P S                 
Sbjct: 224 SNHLSPRIPAGNYPVSHISYELNVLGSRGPRRMHCAMDSIPVSAIEQGGTAPTQTEFPLS 283

Query: 269 --ETADDIKMKKA--------------ENAGCTILRNKSPRWHEHLQCWCLNFHGRVTVA 312
             E+   I   K+              +N    +L+NKSPRWHEHLQCWCLNFHGRVTVA
Sbjct: 284 YHESFTSIPFFKSKSVRANNSTASLLTQNGSKLVLKNKSPRWHEHLQCWCLNFHGRVTVA 343

Query: 313 SVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGT 372
           SVKNFQLVA+ D+S P  + + + V+LQFGKVG D+FTMDYR P+SAFQAFAICL+SF T
Sbjct: 344 SVKNFQLVAS-DESNPTNQ-EHDDVILQFGKVGKDMFTMDYRYPISAFQAFAICLSSFDT 401

Query: 373 KLACE 377
           K+ACE
Sbjct: 402 KIACE 406

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/354 (52%), Positives = 244/354 (68%), Gaps = 35/354 (9%)

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPS 116
           WA L PELL E++ R+E +E  WP R++VVACA VC+ WR ITK+IV+ P  SGK+TFP 
Sbjct: 52  WAQLPPELLREVLVRIEESEVWWPSRRDVVACAGVCRSWRGITKEIVRVPEASGKLTFPI 111

Query: 117 CLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISL 176
            LKQPGPR+   +C IRRN+ T T+YLY+ LT + ++ GKFLLAAR+ R+   ++Y+ISL
Sbjct: 112 SLKQPGPRDGTLKCFIRRNRTTQTYYLYIGLTEALADDGKFLLAARKCRKPTCTDYLISL 171

Query: 177 DAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAG 236
           D  D+S+GSN Y+GKL S+FLGT FT+YD+ PP++GA  S SR +R     Q+SP+VPAG
Sbjct: 172 DMSDMSKGSNTYIGKLRSNFLGTKFTVYDAHPPYDGAVVSKSRSARVVGLNQVSPRVPAG 231

Query: 237 NFEVGQVSYKFNLLKSRGPRRMVCTV------------KCPSSGE----------TADDI 274
           N+ V  +SY+ N+L +RGPRRM C +            K P+  E          +    
Sbjct: 232 NYPVSHISYELNVLGARGPRRMNCIMDSIPTSAVQEGGKAPTQTEFPLSGLDSFPSISFF 291

Query: 275 KMKKAENAGCT-----------ILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATV 323
           + K A     T           +L+NKSPRWHE LQCWCLNF GRVTVASVKNFQLVA+ 
Sbjct: 292 RSKSARIDSATSQLSTQKEEKLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVAS- 350

Query: 324 DQSQPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
           D++ P  + +++ V+LQFGK+G D+FTMDYR P+SAFQ+FAICL+SF TK+ACE
Sbjct: 351 DENGPTNQ-EQDKVILQFGKIGKDLFTMDYRYPISAFQSFAICLSSFDTKIACE 403

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1

 Score =  371 bits (953), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/387 (48%), Positives = 249/387 (64%), Gaps = 43/387 (11%)

Query: 27  GLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVV 86
           G G +    V   TS  +D     A     WA + PELL +++ R+E +ED+WP R+NVV
Sbjct: 27  GYGRSRSQRVVQDTSVPVD-----AFKQSCWASMPPELLRDVLMRIEQSEDTWPSRKNVV 81

Query: 87  ACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLA 146
           +CA VC+ WREI K+IV+ P LS K+TFP  LKQPGPR    QC I RN+   T+YLYL 
Sbjct: 82  SCAGVCRNWREIVKEIVRVPELSSKLTFPISLKQPGPRGSLVQCYIMRNRSNQTYYLYLG 141

Query: 147 LTPSFS-EKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYD 205
           L  + S + GKFLLAA+R+RR   ++YIISL+  D+S+GSN Y+GKL S+FLGT FT+YD
Sbjct: 142 LNQAASNDDGKFLLAAKRFRRPTCTDYIISLNCDDVSRGSNTYIGKLRSNFLGTKFTVYD 201

Query: 206 SRPPHNGAKPSSSRGSRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCTVKC- 264
           ++P + G + + +R SR  + KQ+SP++P+GN+ V  +SY+ N+L SRGPRRM C +   
Sbjct: 202 AQPTNPGTQVTRTRSSRLLSLKQVSPRIPSGNYPVAHISYELNVLGSRGPRRMQCVMDAI 261

Query: 265 PSS----------------------------------GETADDIKMKKAENAGCTILRNK 290
           P+S                                   E+        A+  G  +L+NK
Sbjct: 262 PASAVEPGGTAPTQTELVHSNLDSFPSFSFFRSKSIRAESLPSGPSSAAQKEGLLVLKNK 321

Query: 291 SPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFT 350
           +PRWHE LQCWCLNF+GRVTVASVKNFQLVA   ++ P G  + E V+LQFGKVG D+FT
Sbjct: 322 APRWHEQLQCWCLNFNGRVTVASVKNFQLVAA-PENGPAGP-EHENVILQFGKVGKDVFT 379

Query: 351 MDYRQPLSAFQAFAICLTSFGTKLACE 377
           MDY+ P+SAFQAF ICL+SF TK+ACE
Sbjct: 380 MDYQYPISAFQAFTICLSSFDTKIACE 406

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z2G9|TLP5_ORYSJ Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1

 Score =  367 bits (941), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/364 (51%), Positives = 236/364 (64%), Gaps = 42/364 (11%)

Query: 55  GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITF 114
           G WA L PELL ++I+RVE +E +WP R+ VVACA VC+ WRE+TK++VK+    G+ITF
Sbjct: 66  GRWANLPPELLLDVIQRVEASEATWPARRQVVACAAVCRSWREVTKEVVKTLEECGRITF 125

Query: 115 PSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSF-SEKGKFLLAARRYRRGAHSEYI 173
           P  LKQPGPRE P QC +RR++ TST+ LYL L+PS   E  K LLAAR+ RR   + ++
Sbjct: 126 PISLKQPGPREHPVQCFVRRDRATSTYLLYLGLSPSLHGENDKLLLAARKIRRATRTSFV 185

Query: 174 ISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQV 233
           ISL + D S  S+ YVGKL  +FLGT FTI+DS+PP +     ++R S+R   KQ+SP++
Sbjct: 186 ISLVSNDFSLSSSTYVGKLKPNFLGTKFTIFDSQPPCDAVVLPNNRPSKRHF-KQVSPRL 244

Query: 234 PAGNFEVGQVSYKFNLLKSRGPRRMVCTV------------KCP---------------- 265
           P GN+ V  VSY+  +L++RGPRRM CT+            K P                
Sbjct: 245 PLGNYNVATVSYELTVLRNRGPRRMQCTMHSIPALCIQEGGKAPTPTGIIHSLDEQVPAL 304

Query: 266 ------------SSGETADDIKMKKAENAGCTILRNKSPRWHEHLQCWCLNFHGRVTVAS 313
                       SS   + D+      N    +L+NK+PRWHE LQCWCLNF GRVTVAS
Sbjct: 305 STSKGKEPAIEFSSTSLSADLSGPVCTNEVPLVLKNKAPRWHEQLQCWCLNFRGRVTVAS 364

Query: 314 VKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTK 373
           VKNFQLVA+VD S      ++E V+LQFGK+G DIFTMDYR PLSAFQAFAICLTSF TK
Sbjct: 365 VKNFQLVASVDPSLGIPAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLTSFDTK 424

Query: 374 LACE 377
            ACE
Sbjct: 425 PACE 428

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GVE5|TLP2_ARATH Tubby-like F-box protein 2 OS=Arabidopsis thaliana GN=TULP2 PE=2 SV=1

 Score =  351 bits (900), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 181/349 (51%), Positives = 228/349 (65%), Gaps = 31/349 (8%)

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPS 116
           WA L PELL +II RVE +E +WP R  VV+CA VCK WR IT +IV+ P   GK+TFP 
Sbjct: 48  WASLPPELLHDIIWRVEESETAWPARAAVVSCASVCKSWRGITMEIVRIPEQCGKLTFPI 107

Query: 117 CLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISL 176
            LKQPGPR+ P QC I+RN+ T+T+ LY  L PS +E  K LLAARR RR   +++IISL
Sbjct: 108 SLKQPGPRDSPIQCFIKRNRATATYILYYGLMPSETENDKLLLAARRIRRATCTDFIISL 167

Query: 177 DAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAG 236
            A + S+ S+ YVGKL S FLGT FTIYD++   + A+   ++ +RR   KQ +P++P  
Sbjct: 168 SAKNFSRSSSTYVGKLRSGFLGTKFTIYDNQTASSTAQ---AQPNRRLHPKQAAPKLPTN 224

Query: 237 NFEVGQVSYKFNLLKSRGPRRMVCTVK-CPSSGETADDIKMKKAENA--------GCTI- 286
           +  VG ++Y+ N+L++RGPRRM C +   P S   A+   ++  E          G TI 
Sbjct: 225 SSTVGNITYELNVLRTRGPRRMHCAMDSIPLSSVIAEPSVVQGIEEEVSSSPSPKGETIT 284

Query: 287 ------------------LRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQP 328
                             L+NKSPRWHE LQCWCLNF GRVTVASVKNFQLVA +D S  
Sbjct: 285 TDKEIPDNSPSLRDQPLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAEIDASLD 344

Query: 329 GGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
               + E V+LQFGK+G DIFTMDYR PLSAFQAFAIC++SF TK ACE
Sbjct: 345 APPEEHERVILQFGKIGKDIFTMDYRYPLSAFQAFAICISSFDTKPACE 393

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	377
356549655	381	PREDICTED: tubby-like F-box protein 7-li	0.976	0.965	0.725	1e-164
356544096	378	PREDICTED: tubby-like F-box protein 7-li	0.970	0.968	0.735	1e-164
224116990	332	predicted protein [Populus trichocarpa]	0.843	0.957	0.837	1e-163
255567112	381	conserved hypothetical protein [Ricinus	0.994	0.984	0.738	1e-161
359493774	401	PREDICTED: tubby-like F-box protein 7-li	0.973	0.915	0.705	1e-161
449438923	380	PREDICTED: tubby-like F-box protein 7-li	0.875	0.868	0.796	1e-161
302399099	378	TLP domain class transcription factor [M	0.984	0.981	0.742	1e-160
357452139	371	Tubby-like F-box protein [Medicago trunc	0.960	0.975	0.735	1e-159
359493776	406	PREDICTED: tubby-like F-box protein 7-li	0.973	0.903	0.699	1e-159
224114780	334	predicted protein [Populus trichocarpa]	0.843	0.952	0.814	1e-158

>gi|356549655|ref|XP_003543207.1| PREDICTED: tubby-like F-box protein 7-like [Glycine max]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 283/390 (72%), Positives = 320/390 (82%), Gaps = 22/390 (5%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           MSLR    SR+ SRSF E   +     +G  D             +G  +++ +  W+ +
Sbjct: 1   MSLRKVFRSRKFSRSFKEVLPAEGAAIVGGED---------GVAGAGEESSNGNNGWSNM 51

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPE+LGEI+RRV+  E+ WP+RQNVVACACVCKRWR+IT+++V+ P  +GKITFP+CLKQ
Sbjct: 52  LPEILGEIVRRVDAAEEQWPNRQNVVACACVCKRWRDITREVVRVPSHTGKITFPACLKQ 111

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGD 180
           PGPR+ PHQCLI+RNKKTSTFYLYLALTPSF++KGKFLLAARRYR G H+EYIISLDA D
Sbjct: 112 PGPRDVPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDADD 171

Query: 181 LSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAGNFEV 240
           LSQGSNAYVGKLSSDFLGTNFTIYDS+PPH+GAKPSS R SRRFASKQISPQVPAGNFEV
Sbjct: 172 LSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEV 231

Query: 241 GQVSYKFNLLKSRGPRRMVCTVKCP------SSGETADD-------IKMKKAENAGCTIL 287
           GQVSYKFNLLKSRGPRRMVC++KCP       S E++D        I  K+   +G TIL
Sbjct: 232 GQVSYKFNLLKSRGPRRMVCSLKCPVTPVVSPSVESSDSTPVNGHKIPDKEQVASGYTIL 291

Query: 288 RNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDD 347
           +NK+PRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDD
Sbjct: 292 KNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDD 351

Query: 348 IFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
            FTMDYRQPLSAFQAFAICLTSFGTKLACE
Sbjct: 352 TFTMDYRQPLSAFQAFAICLTSFGTKLACE 381

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544096|ref|XP_003540491.1| PREDICTED: tubby-like F-box protein 7-like [Glycine max]

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 286/389 (73%), Positives = 319/389 (82%), Gaps = 23/389 (5%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           MSLR    SR+ S+SF E   +      GAA +  V+ T         AA  ++  W+ +
Sbjct: 1   MSLRKVFRSRKFSKSFKEVLPAE-----GAAVEGGVAGTVEE------AANGNNNGWSSM 49

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPE+LGEI+RRV+  E+ WP+RQNVVACACVCKRWR+IT+++V+ P  +GKITFPSCLKQ
Sbjct: 50  LPEILGEIVRRVDAAEEQWPNRQNVVACACVCKRWRDITREVVRVPSHTGKITFPSCLKQ 109

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGD 180
           PGPR+ PHQCLI+RN+KTSTFYLYLALTPSF++KGKFLLAARRYR G H+EYIISLDA D
Sbjct: 110 PGPRDVPHQCLIKRNQKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDADD 169

Query: 181 LSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAGNFEV 240
           LSQGSNAYVGKLSSDFLGTNFTIYDS+PPH+GAKPSS R SRRFASKQISPQVPAGNFEV
Sbjct: 170 LSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEV 229

Query: 241 GQVSYKFNLLKSRGPRRMVCTVKCP----------SSGETADDIKMKKAENA--GCTILR 288
           GQVSYKFNLLKSRGPRRMVC++KCP          S     +  KM   E A  G TIL+
Sbjct: 230 GQVSYKFNLLKSRGPRRMVCSLKCPVTPVSPTSGSSDSTPVNGHKMHDKEQAASGYTILK 289

Query: 289 NKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDI 348
           NK+PRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDD 
Sbjct: 290 NKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDT 349

Query: 349 FTMDYRQPLSAFQAFAICLTSFGTKLACE 377
           FTMDYRQPLSAFQAFAICLTSFGTKLACE
Sbjct: 350 FTMDYRQPLSAFQAFAICLTSFGTKLACE 378

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116990|ref|XP_002331802.1| predicted protein [Populus trichocarpa] gi|222874498|gb|EEF11629.1| predicted protein [Populus trichocarpa]

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 278/332 (83%), Positives = 300/332 (90%), Gaps = 14/332 (4%)

Query: 60  LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKS-PFL------SGKI 112
           +LPELLGEII+RVE +ED WP RQNVVACACVCK+WRE+TKDIVKS P        SGKI
Sbjct: 1   MLPELLGEIIKRVEESEDRWPQRQNVVACACVCKKWREVTKDIVKSLPNNNNNNGSSGKI 60

Query: 113 TFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEY 172
           TFPSCLKQPGPR+ PHQCLI+RNKKTSTFYLYLALTPSF++KGKFLLAARRYR+G H+EY
Sbjct: 61  TFPSCLKQPGPRDLPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRQGVHTEY 120

Query: 173 IISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQ 232
           IISLDA DLSQGSNAYVGKLSSDFLGTNFTIYDS+PPH+GAKPSSSR SRRFASKQISPQ
Sbjct: 121 IISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSSRASRRFASKQISPQ 180

Query: 233 VPAGNFEVGQVSYKFNLLKSRGPRRMVCTVKCPSSGET-----ADDIKMKKAENA--GCT 285
           VPAGNFEVGQVSYKFNLLKSRGPRRMVC++KCP S ET      D+ KM + E+A  G T
Sbjct: 181 VPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKCPVSQETTNVKNVDNSKMTQLESASSGFT 240

Query: 286 ILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVG 345
           +LRNK+PRWHEHLQCWCLNFHGRVTVASVKNFQLVA +DQSQPGGKGDEETVLLQFGKVG
Sbjct: 241 VLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVAIMDQSQPGGKGDEETVLLQFGKVG 300

Query: 346 DDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
           DD FTMDYRQPLSAFQAFA+CLTSFGTKLACE
Sbjct: 301 DDTFTMDYRQPLSAFQAFALCLTSFGTKLACE 332

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567112|ref|XP_002524538.1| conserved hypothetical protein [Ricinus communis] gi|223536212|gb|EEF37865.1| conserved hypothetical protein [Ricinus communis]

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 283/383 (73%), Positives = 310/383 (80%), Gaps = 8/383 (2%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           MSL+    SRR S+SF   +   ++  L      V         D           W  +
Sbjct: 1   MSLKKLIRSRRFSKSFKCVNNHKEDIALVVP--GVHDGGGGGGGDELWGEWEERDGWGSM 58

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPELLGEII+RVE +ED WP RQNVVACACVCK+WREI KDIVKSP  +GKITFPSCLK 
Sbjct: 59  LPELLGEIIKRVEESEDRWPQRQNVVACACVCKKWREIAKDIVKSPNNTGKITFPSCLKL 118

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGD 180
           PGP + P+QCLI+RNKKTSTFYLYLALTPSF +KGKFLLAARRYR GA  EYIISLDA D
Sbjct: 119 PGPHDLPYQCLIKRNKKTSTFYLYLALTPSFMDKGKFLLAARRYRHGARMEYIISLDADD 178

Query: 181 LSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAGNFEV 240
           LSQGSNAYVGKLS+DFLGTNF IYDS+PPH+GAKPSSSR SRRFASKQISPQV AGN+EV
Sbjct: 179 LSQGSNAYVGKLSADFLGTNFIIYDSQPPHSGAKPSSSRASRRFASKQISPQVSAGNYEV 238

Query: 241 GQVSYKFNLLKSRGPRRMVCTVKCPSSG----ETADDIKMKKAEN--AGCTILRNKSPRW 294
           GQVSYKFNLLKSRGPRRMVC++KCP S     +   D KM+  E+  +GCTILRNK+PRW
Sbjct: 239 GQVSYKFNLLKSRGPRRMVCSLKCPISEVIVIDNHFDSKMEGQESSASGCTILRNKAPRW 298

Query: 295 HEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTMDYR 354
           HEHLQCWCLNFHGRVTVASVKNFQLVATVDQS+PGGKGDE+TVLLQFGKVGDD FTMDYR
Sbjct: 299 HEHLQCWCLNFHGRVTVASVKNFQLVATVDQSRPGGKGDEDTVLLQFGKVGDDTFTMDYR 358

Query: 355 QPLSAFQAFAICLTSFGTKLACE 377
           QPLSAFQAFAICLTSFGTKLACE
Sbjct: 359 QPLSAFQAFAICLTSFGTKLACE 381

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493774|ref|XP_003634665.1| PREDICTED: tubby-like F-box protein 7-like isoform 1 [Vitis vinifera]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 290/411 (70%), Positives = 326/411 (79%), Gaps = 44/411 (10%)

Query: 1   MSLRNSCLSRR---ISRSFGE-----AHKSSKETGL-------------------GAADD 33
           MSLR S LSRR   +S+SF E     + +S  E  L                   GAA D
Sbjct: 1   MSLRRSILSRRTFALSKSFKEFRTLDSSESRSEPALRPRIVDDDVSDEEEEDSGDGAAGD 60

Query: 34  SVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCK 93
           S +    S   DS          W+ +LPELLGEII+RVE +E+ WP R+NVV+CACVCK
Sbjct: 61  SGIRRVDSGRGDS----------WSTMLPELLGEIIQRVEASENRWPTRRNVVSCACVCK 110

Query: 94  RWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSE 153
           RWR+IT+++V+S   SG+ITFPSCLKQPGPR   HQCLI+RNKK STFYLYLAL+ SF++
Sbjct: 111 RWRDITREVVRSRLDSGQITFPSCLKQPGPRNSEHQCLIKRNKKNSTFYLYLALSSSFTD 170

Query: 154 KGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGA 213
           KGKFLLAARRYR GAH+EYIISLDA D+SQGSNAYVGKL SDFLGTNF IYDS+PPH+GA
Sbjct: 171 KGKFLLAARRYRHGAHTEYIISLDADDISQGSNAYVGKLRSDFLGTNFAIYDSQPPHSGA 230

Query: 214 KPSSSRGSRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCTVKCPSSGETA-- 271
           KPSSSR  RRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVC+++CPSSGETA  
Sbjct: 231 KPSSSRAGRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLRCPSSGETANN 290

Query: 272 ---DDIKMKKAENA--GCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQS 326
              D+  +KK + A  GC+IL+NK+PRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQS
Sbjct: 291 KSPDNSDLKKPDPAAPGCSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQS 350

Query: 327 QPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
           QPGGKGDEETVLLQFGKVG+D FTMDYRQPLSAF AFAICLTSFGTKLACE
Sbjct: 351 QPGGKGDEETVLLQFGKVGNDTFTMDYRQPLSAFLAFAICLTSFGTKLACE 401

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438923|ref|XP_004137237.1| PREDICTED: tubby-like F-box protein 7-like [Cucumis sativus] gi|449483168|ref|XP_004156511.1| PREDICTED: tubby-like F-box protein 7-like [Cucumis sativus]

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 270/339 (79%), Positives = 302/339 (89%), Gaps = 9/339 (2%)

Query: 48  AAAAHSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPF 107
           + A+H   SW+ +LPELL EII+RVE  E  WP+RQNVV+CACVCKRWR+ITK++ ++  
Sbjct: 42  SGASHPQSSWSSMLPELLREIIQRVEAEEHGWPNRQNVVSCACVCKRWRDITKEVARATP 101

Query: 108 LSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRG 167
            SGKITFPSCLKQPGP + PHQCLI+RNKKTSTF+LYLALTPSF++KGKFLLAARRYR G
Sbjct: 102 HSGKITFPSCLKQPGPSDLPHQCLIKRNKKTSTFFLYLALTPSFTDKGKFLLAARRYRHG 161

Query: 168 AHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASK 227
           AH+EYIISLDA DLSQGSNAYVGKLSSDFLGTNFTIYDS+PPHNGAKPS+S+ SRRFASK
Sbjct: 162 AHTEYIISLDAEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSNSKSSRRFASK 221

Query: 228 QISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCTVKCP-----SSGETADDIKMKKAE-- 280
           QISPQV AGNFEVGQVSYKFNLLKSRGPRRM+C++KCP      S +  ++ KMKK+E  
Sbjct: 222 QISPQVSAGNFEVGQVSYKFNLLKSRGPRRMICSLKCPLSEDNGSNKPCENSKMKKSEFL 281

Query: 281 --NAGCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVL 338
             ++G TILRNK+PRWHEHLQCWCLNFHGRVTVASVKNFQLVATVD +QPGGKGDEETVL
Sbjct: 282 SSSSGLTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDHTQPGGKGDEETVL 341

Query: 339 LQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
           LQFGKVGDD FTMDYRQPLSAFQAFAICLTSFGTKLACE
Sbjct: 342 LQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 380

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399099|gb|ADL36844.1| TLP domain class transcription factor [Malus x domestica]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 285/384 (74%), Positives = 320/384 (83%), Gaps = 13/384 (3%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           MSLR +  SR+ S+SF E   S ++   G  D  VV  +  A   S  +++      + +
Sbjct: 1   MSLRKAFRSRKFSKSFRELKLSDEDQARGG-DRRVVRDSDCADSSSSTSSSSW----SDM 55

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPELLGEIIRRVE +ED WPHR+NVVACACVCKRWR+ITK+I +SP  SGKITFPSCLKQ
Sbjct: 56  LPELLGEIIRRVEASEDKWPHRKNVVACACVCKRWRDITKEIARSPSYSGKITFPSCLKQ 115

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGD 180
           PGPR+FPHQCLI+RNKKTSTFYLYLALT SF++KGKFLLAARRYR G + EYIISLDA D
Sbjct: 116 PGPRDFPHQCLIKRNKKTSTFYLYLALTSSFTDKGKFLLAARRYRHGTNYEYIISLDADD 175

Query: 181 LSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAGNFEV 240
           +SQGSNAYVGKLSSDFLGTNFTIYDS+PPH+GAKP+SSR +RRFASKQISPQVPAGNFEV
Sbjct: 176 ISQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPASSRSTRRFASKQISPQVPAGNFEV 235

Query: 241 GQVSYKFNLLKSRGPRRMVCTVKCPSSGETA-----DDIKMKKA--ENAGCTILRNKSPR 293
           GQVSYKFNLLKSRGPRRM+C + CP S ETA     D++K+KK    ++G T LRNK+PR
Sbjct: 236 GQVSYKFNLLKSRGPRRMICPLICPPSDETAIGKPLDNLKLKKTACTSSGYTFLRNKAPR 295

Query: 294 WHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTMDY 353
           WH+ LQCWCLNFHGRVTVASVKNFQLVA VD SQPGGKGDEET  LQFGKVGDD FTMDY
Sbjct: 296 WHDQLQCWCLNFHGRVTVASVKNFQLVAAVDPSQPGGKGDEETA-LQFGKVGDDTFTMDY 354

Query: 354 RQPLSAFQAFAICLTSFGTKLACE 377
           RQPLSAFQAFAICLTSFGTKLACE
Sbjct: 355 RQPLSAFQAFAICLTSFGTKLACE 378

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452139|ref|XP_003596346.1| Tubby-like F-box protein [Medicago truncatula] gi|87241115|gb|ABD32973.1| Tubby; Cyclin-like F-box [Medicago truncatula] gi|355485394|gb|AES66597.1| Tubby-like F-box protein [Medicago truncatula]

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 284/386 (73%), Positives = 315/386 (81%), Gaps = 24/386 (6%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           MSL     SR+ S+SF E    S +T    ADD           D+G  +A  +  W+ +
Sbjct: 1   MSLMKVFRSRKYSKSFKEVQ--SIDT---VADDR---------RDAGGESADGT-DWSTM 45

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LP+LL EII+RV+  E+ WPHRQNVVACACVCKRWR+IT++IVKSP  +G ITFPSCLKQ
Sbjct: 46  LPDLLAEIIKRVDVAEEQWPHRQNVVACACVCKRWRDITREIVKSPQRNGTITFPSCLKQ 105

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGD 180
           PGPR+ PH CLI+R+KKTSTFYLYLALT SFS+KGKFLLAARRYR G H+EY ISLDA D
Sbjct: 106 PGPRDLPHHCLIKRSKKTSTFYLYLALTSSFSDKGKFLLAARRYRCGTHTEYAISLDADD 165

Query: 181 LSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAGNFEV 240
           LSQGSNAYVGKLSSDFLGTNFTIYDS+PPHNGAKPS +R SRRFASKQISPQVPAGNFE 
Sbjct: 166 LSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSCARASRRFASKQISPQVPAGNFEA 225

Query: 241 GQVSYKFNLLKSRGPRRMVCTVK--CPSSGETADD-----IKMKKAENAGC--TILRNKS 291
           G VSYKFNLLKSRGPRRM+C++K   PS GE++D       KM   E+A    TIL+NK+
Sbjct: 226 GDVSYKFNLLKSRGPRRMMCSLKFPVPSVGESSDSKSFDGQKMHSKEHAASAHTILKNKA 285

Query: 292 PRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTM 351
           PRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDD FTM
Sbjct: 286 PRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTM 345

Query: 352 DYRQPLSAFQAFAICLTSFGTKLACE 377
           DYRQPLSAFQAFAICLTSFGTKLACE
Sbjct: 346 DYRQPLSAFQAFAICLTSFGTKLACE 371

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493776|ref|XP_003634666.1| PREDICTED: tubby-like F-box protein 7-like isoform 2 [Vitis vinifera]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 291/416 (69%), Positives = 327/416 (78%), Gaps = 49/416 (11%)

Query: 1   MSLRNSCLSRR---ISRSFGE-----AHKSSKETGL-------------------GAADD 33
           MSLR S LSRR   +S+SF E     + +S  E  L                   GAA D
Sbjct: 1   MSLRRSILSRRTFALSKSFKEFRTLDSSESRSEPALRPRIVDDDVSDEEEEDSGDGAAGD 60

Query: 34  SVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCK 93
           S +    S   DS          W+ +LPELLGEII+RVE +E+ WP R+NVV+CACVCK
Sbjct: 61  SGIRRVDSGRGDS----------WSTMLPELLGEIIQRVEASENRWPTRRNVVSCACVCK 110

Query: 94  RWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALT----P 149
           RWR+IT+++V+S   SG+ITFPSCLKQPGPR   HQCLI+RNKK STFYLYLAL+    P
Sbjct: 111 RWRDITREVVRSRLDSGQITFPSCLKQPGPRNSEHQCLIKRNKKNSTFYLYLALSSVLFP 170

Query: 150 S-FSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRP 208
           S F++KGKFLLAARRYR GAH+EYIISLDA D+SQGSNAYVGKL SDFLGTNF IYDS+P
Sbjct: 171 SAFTDKGKFLLAARRYRHGAHTEYIISLDADDISQGSNAYVGKLRSDFLGTNFAIYDSQP 230

Query: 209 PHNGAKPSSSRGSRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCTVKCPSSG 268
           PH+GAKPSSSR  RRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVC+++CPSSG
Sbjct: 231 PHSGAKPSSSRAGRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLRCPSSG 290

Query: 269 ETA-----DDIKMKKAENA--GCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVA 321
           ETA     D+  +KK + A  GC+IL+NK+PRWHEHLQCWCLNFHGRVTVASVKNFQLVA
Sbjct: 291 ETANNKSPDNSDLKKPDPAAPGCSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVA 350

Query: 322 TVDQSQPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
           TVDQSQPGGKGDEETVLLQFGKVG+D FTMDYRQPLSAF AFAICLTSFGTKLACE
Sbjct: 351 TVDQSQPGGKGDEETVLLQFGKVGNDTFTMDYRQPLSAFLAFAICLTSFGTKLACE 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114780|ref|XP_002316855.1| predicted protein [Populus trichocarpa] gi|222859920|gb|EEE97467.1| predicted protein [Populus trichocarpa]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 272/334 (81%), Positives = 298/334 (89%), Gaps = 16/334 (4%)

Query: 60  LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLS---------G 110
           +LPELLGEII+RVE +ED WP RQ+VVACACVCK+WR++TKDIVKS   S         G
Sbjct: 1   MLPELLGEIIKRVEESEDRWPQRQSVVACACVCKKWRDVTKDIVKSLPNSSSSTNNASPG 60

Query: 111 KITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHS 170
           KITFPSCLKQPGPR+ PHQCLI+RNKKTSTFYLYLALTPSF +KGKFLLAARRYR+GAH+
Sbjct: 61  KITFPSCLKQPGPRDLPHQCLIKRNKKTSTFYLYLALTPSFMDKGKFLLAARRYRQGAHT 120

Query: 171 EYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQIS 230
           EYIISLDA +LSQGSNAYVGKLSSDFLGTNFTI+DS+PPH+GAKPSSSR SRRFASKQIS
Sbjct: 121 EYIISLDADELSQGSNAYVGKLSSDFLGTNFTIFDSQPPHSGAKPSSSRASRRFASKQIS 180

Query: 231 PQVPAGNFEVGQVSYKFNLLKSRGPRRMVCTVKCPSSGETA-----DDIKMKKAENA--G 283
           PQVPAGNFEVGQVSYKFNLLKSRGPRRMVC++KCP   ET      D+ KM   E+A  G
Sbjct: 181 PQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKCPVLQETINDKILDNSKMNGLESASSG 240

Query: 284 CTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGK 343
           CT+LRNK+PRWHEHLQCWCLNFHGRVTVASVKNFQLVAT+DQSQPGG+GDE+TVLLQFGK
Sbjct: 241 CTVLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATMDQSQPGGRGDEDTVLLQFGK 300

Query: 344 VGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
           VG+D FTMDYR PLSAFQAFAICLTSFGTKLACE
Sbjct: 301 VGEDTFTMDYRLPLSAFQAFAICLTSFGTKLACE 334

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	377
TAIR|locus:2009610	379	TLP7 "AT1G53320" [Arabidopsis	0.843	0.839	0.789	3.8e-142
TAIR|locus:2025327	455	TLP1 "AT1G76900" [Arabidopsis	0.551	0.457	0.525	3.8e-91
TAIR|locus:2032950	445	TLP10 "AT1G25280" [Arabidopsis	0.533	0.451	0.507	2.4e-89
TAIR|locus:2062121	394	TLP2 "AT2G18280" [Arabidopsis	0.557	0.532	0.5	1.5e-87
TAIR|locus:2081101	380	TLP9 "AT3G06380" [Arabidopsis	0.519	0.515	0.509	8.3e-83
TAIR|locus:2036730	413	TLP6 "AT1G47270" [Arabidopsis	0.509	0.464	0.478	4.5e-82
TAIR|locus:2180034	389	TLP11 "AT5G18680" [Arabidopsis	0.538	0.521	0.466	1.4e-78
TAIR|locus:2194686	429	TLP5 "AT1G43640" [Arabidopsis	0.546	0.480	0.509	1.8e-70
UNIPROTKB|Q16IR1	410	king-tubby2 "Protein king tubb	0.342	0.314	0.459	3.1e-38
UNIPROTKB|Q16KI5	410	king-tubby1 "Protein king tubb	0.342	0.314	0.459	3.1e-38

TAIR|locus:2009610 TLP7 "AT1G53320" [Arabidopsis thaliana (taxid:3702)]

 Score = 1364 (485.2 bits), Expect = 3.8e-142, Sum P(2) = 3.8e-142
 Identities = 263/333 (78%), Positives = 288/333 (86%)

Query:    60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             +LPELLGEIIRRVE TED WP R++VV CACV K+WREIT D  +S   SGKITFPSCLK
Sbjct:    47 MLPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKITFPSCLK 106

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAG 179
              PGPR+F +QCLI+RNKKTSTFYLYLALTPSF++KGKFLLAARR+R GA++EYIISLDA 
Sbjct:   107 LPGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISLDAD 166

Query:   180 DLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAGNFE 239
             D SQGSNAYVGKL SDFLGTNFT+YDS+PPHNGAKPS+ + SRRFASKQISPQVPAGNFE
Sbjct:   167 DFSQGSNAYVGKLRSDFLGTNFTVYDSQPPHNGAKPSNGKASRRFASKQISPQVPAGNFE 226

Query:   240 VGQVSYKFNLLKSRGPRRMVCTVKCPS-------SGETAD----DIK--MKKAENAGC-- 284
             VG VSYKFNLLKSRGPRRMV T++CPS       +G ++D    D+   MKK    G   
Sbjct:   227 VGHVSYKFNLLKSRGPRRMVSTLRCPSPSPSSSSAGLSSDQKPCDVTKIMKKPNKDGSSL 286

Query:   285 TILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKV 344
             TIL+NK+PRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQP GKGDEETVLLQFGKV
Sbjct:   287 TILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPSGKGDEETVLLQFGKV 346

Query:   345 GDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
             GDD FTMDYRQPLSAFQAFAICLTSFGTKLACE
Sbjct:   347 GDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 379

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2025327 TLP1 "AT1G76900" [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 3.8e-91, Sum P(2) = 3.8e-91
 Identities = 112/213 (52%), Positives = 159/213 (74%)

Query:    60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             L PELL ++I+R+E +E  WP R++VVACA VC+ WR++ K+IV+SP LSGKITFP  LK
Sbjct:    60 LPPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPVSLK 119

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSFS-EKGKFLLAARRYRRGAHSEYIISLDA 178
             QPGPR+   QC I+R+K   T++LYL L+P+   E GKFLL+A+R RR  ++EY+IS+ A
Sbjct:   120 QPGPRDATMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRIRRTTYTEYVISMHA 179

Query:   179 GDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNG--AKPSSSRG-SRRFASKQISPQVPA 235
               +S+ SN Y+GK+ S+FLGT F IYD++P +N   A+     G SRRF SK++SP+VP+
Sbjct:   180 DTISRSSNTYIGKIRSNFLGTKFIIYDTQPAYNSNIARAVQPVGLSRRFYSKRVSPKVPS 239

Query:   236 GNFEVGQVSYKFNLLKSRGPRRMVCTVKC-PSS 267
             G++++ QVSY+ N+L +RGPRRM C +   P+S
Sbjct:   240 GSYKIAQVSYELNVLGTRGPRRMHCAMNSIPAS 272

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2032950 TLP10 "AT1G25280" [Arabidopsis thaliana (taxid:3702)]

 Score = 558 (201.5 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
 Identities = 104/205 (50%), Positives = 154/205 (75%)

Query:    60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             L PELL ++I+R+E +E +WP R++VVACA VC+ WR + ++IV  P + GK+TFP  LK
Sbjct:    62 LPPELLFDVIKRLEESESNWPARKHVVACASVCRSWRAMCQEIVLGPEICGKLTFPVSLK 121

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSFS-EKGKFLLAARRYRRGAHSEYIISLDA 178
             QPGPR+   QC I+R+K   TF+L+L L+P+   E GKFLL+A+R RR   +EYIIS+DA
Sbjct:   122 QPGPRDAMIQCFIKRDKSKLTFHLFLCLSPALLVENGKFLLSAKRTRRTTRTEYIISMDA 181

Query:   179 GDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPS--SSRGSR-RFASKQISPQVPA 235
              ++S+ SN+Y+GKL S+FLGT F +YD++PP N +  +  + R SR RF S+++SP+VP+
Sbjct:   182 DNISRSSNSYLGKLRSNFLGTKFLVYDTQPPPNTSSSALITDRTSRSRFHSRRVSPKVPS 241

Query:   236 GNFEVGQVSYKFNLLKSRGPRRMVC 260
             G++ + Q++Y+ N+L +RGPRRM C
Sbjct:   242 GSYNIAQITYELNVLGTRGPRRMHC 266

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2062121 TLP2 "AT2G18280" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.5e-87, Sum P(2) = 1.5e-87
 Identities = 107/214 (50%), Positives = 145/214 (67%)

Query:    60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             L PELL +II RVE +E +WP R  VV+CA VCK WR IT +IV+ P   GK+TFP  LK
Sbjct:    51 LPPELLHDIIWRVEESETAWPARAAVVSCASVCKSWRGITMEIVRIPEQCGKLTFPISLK 110

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAG 179
             QPGPR+ P QC I+RN+ T+T+ LY  L PS +E  K LLAARR RR   +++IISL A 
Sbjct:   111 QPGPRDSPIQCFIKRNRATATYILYYGLMPSETENDKLLLAARRIRRATCTDFIISLSAK 170

Query:   180 DLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAGNFE 239
             + S+ S+ YVGKL S FLGT FTIYD++   + A+   ++ +RR   KQ +P++P  +  
Sbjct:   171 NFSRSSSTYVGKLRSGFLGTKFTIYDNQTASSTAQ---AQPNRRLHPKQAAPKLPTNSST 227

Query:   240 VGQVSYKFNLLKSRGPRRMVCTV-KCPSSGETAD 272
             VG ++Y+ N+L++RGPRRM C +   P S   A+
Sbjct:   228 VGNITYELNVLRTRGPRRMHCAMDSIPLSSVIAE 261

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2081101 TLP9 "AT3G06380" [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 8.3e-83, Sum P(2) = 8.3e-83
 Identities = 103/202 (50%), Positives = 140/202 (69%)

Query:    61 LPE-LLGEIIRRVETTEDS-WPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCL 118
             LPE LL EI+ RVET +   WP R+NVVACA VC+ WR +TK+IV  P  S K+TFP  L
Sbjct:    36 LPEELLREILIRVETVDGGDWPSRRNVVACAGVCRSWRILTKEIVAVPEFSSKLTFPISL 95

Query:   119 KQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDA 178
             KQ GPR+   QC I+RN+ T +++LYL LT S ++ GKFLLAA + +R   ++YIISL +
Sbjct:    96 KQSGPRDSLVQCFIKRNRNTQSYHLYLGLTTSLTDNGKFLLAASKLKRATCTDYIISLRS 155

Query:   179 GDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAGNF 238
              D+S+ SNAY+G++ S+FLGT FT++D       AK   SR S  F   ++SP+VP G++
Sbjct:   156 DDISKRSNAYLGRMRSNFLGTKFTVFDGSQT-GAAKMQKSRSSN-FI--KVSPRVPQGSY 211

Query:   239 EVGQVSYKFNLLKSRGPRRMVC 260
              +  +SY+ N+L SRGPRRM C
Sbjct:   212 PIAHISYELNVLGSRGPRRMRC 233

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2036730 TLP6 "AT1G47270" [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 4.5e-82, Sum P(2) = 4.5e-82
 Identities = 98/205 (47%), Positives = 140/205 (68%)

Query:    60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             L PELL +II+R+E+ +  WP R++VVACA VCK WRE+TK++VK P LSG ITFP  L+
Sbjct:    72 LPPELLLDIIQRIESEQSLWPGRRDVVACASVCKSWREMTKEVVKVPELSGLITFPISLR 131

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSFS-EKGKFLLAARRYRRGAHSEYIISLDA 178
             QPGPR+ P QC I+R + T  + LYL L+P+ S +K K LL+A+R RR   +E+++SL  
Sbjct:   132 QPGPRDAPIQCFIKRERATGIYRLYLGLSPALSGDKSKLLLSAKRVRRATGAEFVVSLSG 191

Query:   179 GDLSQGSNAYVGKLSSDFLGTNFTIYDSRPP-HNGAKPSSSRGSRRFASKQISPQVPAGN 237
              D S+ S+ Y+GKL S+FLGT FT+Y+++PP  N   P S          Q+SP V + +
Sbjct:   192 NDFSRSSSNYIGKLRSNFLGTKFTVYENQPPPFNRKLPPSM---------QVSPWVSSSS 242

Query:   238 --FEVGQVSYKFNLLKSRGPRRMVC 260
               + +  + Y+ N+L++RGPRRM C
Sbjct:   243 SSYNIASILYELNVLRTRGPRRMQC 267

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2180034 TLP11 "AT5G18680" [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 1.4e-78, Sum P(2) = 1.4e-78
 Identities = 97/208 (46%), Positives = 139/208 (66%)

Query:    63 ELLGEIIRRVETTEDS-WPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQP 121
             ELL EI+ RVE  +   WP R++VVACA VC+ WR +  + V  P +S K+TFP  LKQP
Sbjct:    45 ELLREILIRVEAADGGGWPSRRSVVACAGVCRGWRLLMNETVVVPEISSKLTFPISLKQP 104

Query:   122 GPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDL 181
             GPR+   QC I+RN+ T +++LYL LT S ++ GKFLLAA + +    ++YIISL + D+
Sbjct:   105 GPRDSLVQCFIKRNRITQSYHLYLGLTNSLTDDGKFLLAACKLKHTTCTDYIISLRSDDM 164

Query:   182 SQGSNAYVGKLSSDFLGTNFTIYDSRP-PHNGAKPSSSRGSRRFASKQISPQVPAGNFEV 240
             S+ S AYVGK+ S+FLGT FT++D    P  GA  +  R SR +   ++S +VP G++ V
Sbjct:   165 SRRSQAYVGKVRSNFLGTKFTVFDGNLLPSTGA--AKLRKSRSYNPAKVSAKVPLGSYPV 222

Query:   241 GQVSYKFNLLKSRGPRRMVCTVKC-PSS 267
               ++Y+ N+L SRGPR+M C +   P+S
Sbjct:   223 AHITYELNVLGSRGPRKMQCLMDTIPTS 250

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2194686 TLP5 "AT1G43640" [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
 Identities = 107/210 (50%), Positives = 155/210 (73%)

Query:    61 LPE-LLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             LP  LL +++++++ +E +WP R+ VVACA VCK WR + KDIVKSP  SGK+TFP  LK
Sbjct:    58 LPAALLRDVMKKLDESESTWPARKQVVACAGVCKTWRLMCKDIVKSPEFSGKLTFPVSLK 117

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSFS-EKGKFLLAARRYRRGAHSEYIISLDA 178
             QPGPR+   QC I+R+K   T++LYL+L+P+   E GKFLL+A+R RR  ++EY+IS+DA
Sbjct:   118 QPGPRDGIIQCYIKRDKSNMTYHLYLSLSPAILVESGKFLLSAKRSRRATYTEYVISMDA 177

Query:   179 GDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKP-SSSRGSRRFASKQISPQVPAGN 237
              ++S+ S+ Y+GKL S+FLGT F +YD+ P +N ++  S    SR F SK++SP+VP+G+
Sbjct:   178 DNISRSSSTYIGKLKSNFLGTKFIVYDTAPAYNSSQILSPPNRSRSFNSKKVSPKVPSGS 237

Query:   238 FEVGQVSYKFNLLKSRGPRRMVCTV-KCPS 266
             + + QV+Y+ NLL +RGPRRM C +   PS
Sbjct:   238 YNIAQVTYELNLLGTRGPRRMNCIMHSIPS 267

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009620 "response to fungus" evidence=IMP

UNIPROTKB|Q16IR1 king-tubby2 "Protein king tubby 2" [Aedes aegypti (taxid:7159)]

 Score = 276 (102.2 bits), Expect = 3.1e-38, Sum P(2) = 3.1e-38
 Identities = 73/159 (45%), Positives = 93/159 (58%)

Query:   236 GN--FEVGQVSYKFNLLKSRGPRRMVCTVKCPSSGETADDIKMK--------------KA 279
             GN   ++  V Y  N+L  +GPR M  TV  P  G T DD ++K              K+
Sbjct:   265 GNPRLDLAVVIYDTNILGFKGPRNM--TVLLP--GMTEDDQRVKISSADGQQGLLDSWKS 320

Query:   280 ENAGCTI-LRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVL 338
             +N    + L NK+P W++  Q + LNFHGRVT ASVKNFQLV     S P      + ++
Sbjct:   321 KNMDNVVELHNKTPIWNDETQSYVLNFHGRVTQASVKNFQLV---HDSDP------DYIV 371

Query:   339 LQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
             +QFG+  DDIFTMD+R PL AFQAFAI L+SF  KLACE
Sbjct:   372 MQFGRTSDDIFTMDFRYPLCAFQAFAIALSSFDGKLACE 410

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

UNIPROTKB|Q16KI5 king-tubby1 "Protein king tubby 1" [Aedes aegypti (taxid:7159)]

 Score = 276 (102.2 bits), Expect = 3.1e-38, Sum P(2) = 3.1e-38
 Identities = 73/159 (45%), Positives = 93/159 (58%)

Query:   236 GN--FEVGQVSYKFNLLKSRGPRRMVCTVKCPSSGETADDIKMK--------------KA 279
             GN   ++  V Y  N+L  +GPR M  TV  P  G T DD ++K              K+
Sbjct:   265 GNPRLDLAVVIYDTNILGFKGPRNM--TVLLP--GMTEDDQRVKISSADSQQGLLDSWKS 320

Query:   280 ENAGCTI-LRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVL 338
             +N    + L NK+P W++  Q + LNFHGRVT ASVKNFQLV     S P      + ++
Sbjct:   321 KNMDNVVELHNKTPIWNDETQSYVLNFHGRVTQASVKNFQLV---HDSDP------DYIV 371

Query:   339 LQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
             +QFG+  DDIFTMD+R PL AFQAFAI L+SF  KLACE
Sbjct:   372 MQFGRTSDDIFTMDFRYPLCAFQAFAIALSSFDGKLACE 410

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93VI8	TLP7_ARATH	No assigned EC number	0.7168	0.9655	0.9604	yes	no
Q5QM27	TLP1_ORYSJ	No assigned EC number	0.7182	0.8514	0.9016	no	no
Q68Y48	TLP9_ORYSJ	No assigned EC number	0.6978	0.8514	0.8629	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	377
pfam01167	243	pfam01167, Tub, Tub family	5e-95

>gnl|CDD|216339 pfam01167, Tub, Tub family

 Score =  283 bits (725), Expect = 5e-95
 Identities = 106/264 (40%), Positives = 143/264 (54%), Gaps = 36/264 (13%)

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSF-SEKG--KFLLAARRYRRGAHSEYIISLD 177
           P PR    QC I R+K    + L+         E G  KFLLAAR+ +R   S Y+ISLD
Sbjct: 1   PAPRGGTVQCRITRDKSGMDYGLFPTYYLHLERENGKKKFLLAARKRKRSKTSNYLISLD 60

Query: 178 AGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAGN 237
             DLS+  + Y+GKL S+FLGT FT++D+      A+  +             P+V +G 
Sbjct: 61  PTDLSRSGDGYIGKLRSNFLGTKFTVFDNGVNPQKARLVT-------------PKVASGR 107

Query: 238 FEVGQVSYKFNLLKSRGPRRMVCT--------VKCPSSGETADDIKM---KKAENAGCTI 286
            E+  V Y+ N+L  RGPR+M            + P       +  +   +        +
Sbjct: 108 QELAAVCYETNVLGFRGPRKMTVIMPGIPSSHERVPIQPLNDQESLLSRWQNKNKESLLV 167

Query: 287 LRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGD 346
           L NK+PRW++ LQ + LNFHGRVT ASVKNFQ+V            D + ++LQFG+V  
Sbjct: 168 LHNKAPRWNDQLQSYVLNFHGRVTQASVKNFQIVH---------ASDPDYIVLQFGRVAK 218

Query: 347 DIFTMDYRQPLSAFQAFAICLTSF 370
           D+FTMDYR PLSAFQAFAICL+SF
Sbjct: 219 DMFTMDYRYPLSAFQAFAICLSSF 242

Length = 243

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	377
KOG2502	355	consensus Tub family proteins [General function pr	100.0
PF01167	246	Tub: Tub family; InterPro: IPR000007 Tubby, an aut	100.0
KOG2503	565	consensus Tubby superfamily protein TULP4 [General	99.77
PF12043	346	DUF3527: Domain of unknown function (DUF3527); Int	98.35
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.1
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	97.72
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	97.67
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	97.57
KOG2997	366	consensus F-box protein FBX9 [General function pre	92.04
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	85.61

>KOG2502 consensus Tub family proteins [General function prediction only]

Probab=100.00  E-value=2.8e-118  Score=874.01  Aligned_cols=298  Identities=56%  Similarity=0.956  Sum_probs=272.0

Q ss_pred             CCCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHHHhcCCCccCCCCCCccccCCCCCCCceEEEEEe
Q 017118           55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRR  134 (377)
Q Consensus        55 ~~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~~v~~p~~~g~~tfp~sL~qPgPrd~~iQC~I~R  134 (377)
                      +.|++||||+|+|+|+|+|++|+.||+|++||+||+||+.||++++|||++|+.+|++|||+||+||||+|.++||+|+|
T Consensus        43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~R  122 (355)
T KOG2502|consen   43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKR  122 (355)
T ss_pred             chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCceeEEeeecCCCC--CCCCeeEEEEeccccCCceeEEEeccCCCccCCccceeeeecccceecEEEEecCCCCCCC
Q 017118          135 NKKTSTFYLYLALTPSF--SEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNG  212 (377)
Q Consensus       135 ~K~~~tY~LYl~l~~~~--~d~gkfLLaArK~rr~~tSnYiISld~~dlsr~s~~yvGKLRSNflGTkF~IYD~gpp~~~  212 (377)
                      ||+|.+|+||+.|..++  .|++||||||||+||+|++|||||+|++||||++++||||||||||||||||||+|     
T Consensus       123 dks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g-----  197 (355)
T KOG2502|consen  123 DKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNG-----  197 (355)
T ss_pred             ccCCCceeeeecccccccccccceeeeeeeeecccccceeEEeccccccccCccceeeeeecccccceEEEecCC-----
Confidence            99999999999998876  37899999999999999999999999999999999999999999999999999986     


Q ss_pred             CCCCCCCcccccccccccCCCCCcceeEEEEEEeecccCCCCCceeEEEeeCCC-C---------CCccchhhhhhcc--
Q 017118          213 AKPSSSRGSRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCTVKCPS-S---------GETADDIKMKKAE--  280 (377)
Q Consensus       213 ~~~~~~r~~r~~~~k~vsp~v~~g~~ela~V~Ye~Nvlg~rGPRrM~v~i~~P~-~---------~e~~~~~~~~~~~--  280 (377)
                      .+++     ++++      ++|.+++|||+|+||+||||+||||||+|+|++.. .         ++......+.+..  
T Consensus       198 ~~~~-----r~~~------~~~~~~~~la~V~Ye~NVLg~rGPRrM~~im~~i~~s~~~~~v~~q~~~~~~~~l~r~~~k  266 (355)
T KOG2502|consen  198 VNPS-----RRFN------KVPSGRQELAAVIYETNVLGFRGPRRMTVIMPGISPSAPGGRVPVQPENDHPSLLFRSQNK  266 (355)
T ss_pred             CCcc-----cccc------cCCcccceeeEEEEeeccccccCCceeEEeccCCCCCCCCCcccccccccccchhhhcccc
Confidence            3332     2232      68999999999999999999999999999998721 1         1111111222222  


Q ss_pred             -cCCeeEeeeCCCccccCCceEEeccCCcccccccceeEEEeccCCCCCCCCCCCCeEEEEeeeecCCeeEEEccCCCCH
Q 017118          281 -NAGCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSA  359 (377)
Q Consensus       281 -~~~~~~L~nK~P~wne~~~~y~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~d~~~iiLQFGKv~kd~F~mD~~yPlS~  359 (377)
                       .+++++|+||.|+|||++||||||||||||+||||||||||+.         +.++|||||||||+|+|||||+||||+
T Consensus       267 ~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~~---------~p~~iiLQFGrV~kD~FTmDYrYPlSa  337 (355)
T KOG2502|consen  267 DKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHAL---------DPEYIILQFGRVGKDVFTMDYRYPLSA  337 (355)
T ss_pred             CcccceEeecCCCccccccceEEEecCCeEEEeeecceEEeccC---------CCCEEEEEeeeeccceeeecccCccHH
Confidence             2489999999999999999999999999999999999999986         569999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccccC
Q 017118          360 FQAFAICLTSFGTKLACE  377 (377)
Q Consensus       360 ~QAFaI~LssfdtKlACE  377 (377)
                      ||||||||||||+|||||
T Consensus       338 ~QAFaIcLSSFdtKlaCe  355 (355)
T KOG2502|consen  338 FQAFAICLSSFDTKLACE  355 (355)
T ss_pred             HHHHHHHHHhccccccCC
Confidence            999999999999999998

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function

Probab=100.00  E-value=6.1e-81  Score=593.47  Aligned_cols=229  Identities=53%  Similarity=0.839  Sum_probs=180.0

Q ss_pred             CCCCCCceEEEEEeeecCceeEEeeecCCCCC-CCCeeEEEEeccccCCceeEEEeccCCCccCCccceeeeecccceec
Q 017118          121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFS-EKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGT  199 (377)
Q Consensus       121 PgPrd~~iQC~I~R~K~~~tY~LYl~l~~~~~-d~gkfLLaArK~rr~~tSnYiISld~~dlsr~s~~yvGKLRSNflGT  199 (377)
                      |||+|++|||+|+|||+|.+|+||+.|+.++. ++|+|||||||++++++||||||++++|++|++++|||||||||+||
T Consensus         1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT   80 (246)
T PF01167_consen    1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGT   80 (246)
T ss_dssp             B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TTSS
T ss_pred             CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeecccccee
Confidence            89999999999999999988777777776654 88999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCCcccccccccccCCCCCcceeEEEEEEeecccCCCCCceeEEEeeCCCCCCc-----c--c
Q 017118          200 NFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCTVKCPSSGET-----A--D  272 (377)
Q Consensus       200 kF~IYD~gpp~~~~~~~~~r~~r~~~~k~vsp~v~~g~~ela~V~Ye~Nvlg~rGPRrM~v~i~~P~~~e~-----~--~  272 (377)
                      +|+|||+|++.+...             ..+|..+.+++|||+|.|++||||++|||+|+|+||.+.....     .  .
T Consensus        81 ~F~iyD~g~~~~~~~-------------~~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~~~~  147 (246)
T PF01167_consen   81 EFTIYDNGPNPKKSK-------------SISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRVPFQ  147 (246)
T ss_dssp             EEEEEESSB-CCCST-------------CCTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B----
T ss_pred             EEEEECCCCCCcccc-------------ccCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccceeeeee
Confidence            999999996554332             1256677889999999999999999999999999998432211     0  0


Q ss_pred             ------hhhhhhc---ccCCeeEeeeCCCccccCCceEEeccCCcccccccceeEEEeccCCCCCCCCCCCCeEEEEeee
Q 017118          273 ------DIKMKKA---ENAGCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGK  343 (377)
Q Consensus       273 ------~~~~~~~---~~~~~~~L~nK~P~wne~~~~y~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~d~~~iiLQFGK  343 (377)
                            .......   ..++.++|+||.|+||+++++|+|||+||||+|||||||||+++         ++++|||||||
T Consensus       148 p~~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~SvKNFql~~~~---------~~~~~~lqfGk  218 (246)
T PF01167_consen  148 PLNQEKDSLLSRFQNKKKDELIVLKNKPPRWNEELQSYVLNFNGRVTVASVKNFQLVHPS---------DPDRIVLQFGK  218 (246)
T ss_dssp             -SS-CCCSHHHHHHCT-TTSEEEEEE---EEETTTTEEEEEETTSECC-BTTEEEEEBTT---------BTTSESEEEEE
T ss_pred             ccccccccccccccccCCcceEEEecCCCcEeccCCeEEeccCCeEeccccceeEEEccC---------CCCeEEEEEEE
Confidence                  0011111   12389999999999999999999999999999999999999875         57899999999


Q ss_pred             ecCCeeEEEccCCCCHHHHHHHHHHhcc
Q 017118          344 VGDDIFTMDYRQPLSAFQAFAICLTSFG  371 (377)
Q Consensus       344 v~kd~F~mD~~yPlS~~QAFaI~Lssfd  371 (377)
                      |++|+|+|||+|||||+|||||||||||
T Consensus       219 ~~~~~f~~d~~~Pls~~qAF~i~lssfd  246 (246)
T PF01167_consen  219 VGKDVFTMDFRYPLSPLQAFAIALSSFD  246 (246)
T ss_dssp             EETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred             ecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence            9999999999999999999999999998

This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.

>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]

Probab=99.77  E-value=1.5e-19  Score=184.36  Aligned_cols=80  Identities=41%  Similarity=0.767  Sum_probs=73.2

Q ss_pred             CeeEeeeCCCccccCCceEEeccCCcccccccceeEEEeccCCCCCCCCCCCCeEEEEeeeecCCeeEEEccCCCCHHHH
Q 017118          283 GCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQA  362 (377)
Q Consensus       283 ~~~~L~nK~P~wne~~~~y~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~d~~~iiLQFGKv~kd~F~mD~~yPlS~~QA  362 (377)
                      +..++.||+|.|||+.|-|+|||.||||+.|.||||+-..            .+.|||||+|+.+.|++||+||+|+.||
T Consensus       485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~------------gkQvmqFgRidg~aytldfqypfSa~Qa  552 (565)
T KOG2503|consen  485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELF------------GKQVMQFGRIDGPAYTLDFQYPFSAGQA  552 (565)
T ss_pred             eEEEeecCCccccccceEEEeccCCccchhhhccceEeec------------chhhheeccccCCcccCCCCCchHHHHH
Confidence            5679999999999999999999999999999999999653            4568999999999999999999999999


Q ss_pred             HHHHHHhccccc
Q 017118          363 FAICLTSFGTKL  374 (377)
Q Consensus       363 FaI~LssfdtKl  374 (377)
                      ||+||++.-..|
T Consensus       553 FavalanvtqRL  564 (565)
T KOG2503|consen  553 FAVALANVTQRL  564 (565)
T ss_pred             HHHHHhhhhhhc
Confidence            999999875443

>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised

Probab=98.35  E-value=6e-05  Score=76.01  Aligned_cols=72  Identities=22%  Similarity=0.428  Sum_probs=52.7

Q ss_pred             CeeEeeeCCCccccCCceEEeccCCcccccccceeEEEeccCCCCCCCCCCCCeEEEEeeeecCCeeEEEccCCCCHHHH
Q 017118          283 GCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQA  362 (377)
Q Consensus       283 ~~~~L~nK~P~wne~~~~y~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~d~~~iiLQFGKv~kd~F~mD~~yPlS~~QA  362 (377)
                      ...+|.|..-.          +=..+.+.+.-+=|.|.....        .++.-+|-+--+.++.|.+||+-.||++||
T Consensus       273 ~L~VL~n~~~~----------~~~~~~~~~~~~~feLf~QG~--------~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQA  334 (346)
T PF12043_consen  273 PLRVLSNQSQN----------SKKSSSSKESSHPFELFVQGS--------KEEDPAFSMVNVKEGLYSVEFHSSLSPLQA  334 (346)
T ss_pred             CeEEeCCCCcc----------ccccccccccCCceeeeeccc--------ccCCCceEEEEccCCeEEEEecCcchHHHH
Confidence            56777765221          112455556777788875421        233378999999999999999999999999


Q ss_pred             HHHHHHhccc
Q 017118          363 FAICLTSFGT  372 (377)
Q Consensus       363 FaI~Lssfdt  372 (377)
                      |+||++-+++
T Consensus       335 FSiciA~lh~  344 (346)
T PF12043_consen  335 FSICIAVLHS  344 (346)
T ss_pred             HHHhheeeec
Confidence            9999987764

This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.10  E-value=1.1e-06  Score=63.12  Aligned_cols=37  Identities=32%  Similarity=0.629  Sum_probs=31.3

Q ss_pred             CCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHH
Q 017118           57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (377)
Q Consensus        57 wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~  101 (377)
                      |..||+|+|.+|+..+       |. +|++.|+.|||+|++++.+
T Consensus         1 i~~LP~Eil~~If~~L-------~~-~dl~~~~~vcr~w~~~~~~   37 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYL-------DP-RDLLRLSLVCRRWRRIAND   37 (47)
T ss_dssp             CCCS-HHHHHHHHTTS--------H-HHHHHHTTSSHHHHHHHTC
T ss_pred             ChHhHHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHHCC
Confidence            7899999999999999       33 3899999999999998843

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=97.72  E-value=4.9e-06  Score=59.33  Aligned_cols=39  Identities=26%  Similarity=0.520  Sum_probs=31.8

Q ss_pred             CCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHHH
Q 017118           56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI  102 (377)
Q Consensus        56 ~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~~  102 (377)
                      .|.+||+|++.+|+.+++-        .++++|+.||+.|+.+++..
T Consensus         2 ~~~~LP~~il~~Il~~l~~--------~~~~~l~~vsk~~~~~~~~~   40 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDP--------KDLLRLSLVSKRWRSLVDSP   40 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-H--------HHHHHHCTT-HHHHHHHTTH
T ss_pred             CHHHCCHHHHHHHHHHCcH--------HHHHHHHHHhhHHHHHHcCC
Confidence            4789999999999999944        46999999999999998764

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=97.67  E-value=1.8e-05  Score=80.59  Aligned_cols=41  Identities=24%  Similarity=0.528  Sum_probs=38.0

Q ss_pred             CCCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHHH
Q 017118           55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI  102 (377)
Q Consensus        55 ~~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~~  102 (377)
                      ..|+.||+|||+.|..||       |++.|++.-++||++||..+...
T Consensus         2 ~~Ws~Lp~dll~~i~~~l-------~~~~d~~~~~~vC~sWr~a~~~~   42 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRL-------FSNVELKRFRSICRSWRSSVSGV   42 (373)
T ss_pred             CChhhCCHHHHHHHHhhC-------CcHHHHHHHHhhhhhHHHhcccc
Confidence            359999999999999999       99999999999999999987753

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=97.57  E-value=1.6e-05  Score=54.20  Aligned_cols=34  Identities=29%  Similarity=0.655  Sum_probs=30.9

Q ss_pred             CCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHH
Q 017118           60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (377)
Q Consensus        60 lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~  101 (377)
                      ||+|++.+|+.+|       +. +|+.+|+.|||+||.++.+
T Consensus         1 lP~~ll~~I~~~l-------~~-~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKL-------PP-KDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhcC
Confidence            7999999999999       55 7999999999999998865

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=92.04  E-value=0.056  Score=54.67  Aligned_cols=44  Identities=18%  Similarity=0.237  Sum_probs=33.3

Q ss_pred             CCCCCC---CCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHH
Q 017118           54 SGSWAG---LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (377)
Q Consensus        54 ~~~wa~---lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~  100 (377)
                      |++|-+   ||+|+|-.||+++=.+.-   .-++.+.||+|||.|+-.++
T Consensus       101 qp~~~~~~~LPdEvLm~I~~~vv~~~~---d~rsL~~~s~vCr~F~~~~R  147 (366)
T KOG2997|consen  101 QPELISISVLPDEVLMRIFRWVVSSLL---DLRSLEQLSLVCRGFYKCAR  147 (366)
T ss_pred             chhhhhhhhCCHHHHHHHHHHHHhhhc---chhhHHHhHhhHHHHHHHHc
Confidence            677765   999999999999943221   23678899999999776554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=85.61  E-value=0.21  Score=50.78  Aligned_cols=68  Identities=24%  Similarity=0.395  Sum_probs=52.8

Q ss_pred             CCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHH--HhcCCCccCCCCCCccccCCCCCCCc-eEEE
Q 017118           56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD--IVKSPFLSGKITFPSCLKQPGPREFP-HQCL  131 (377)
Q Consensus        56 ~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~--~v~~p~~~g~~tfp~sL~qPgPrd~~-iQC~  131 (377)
                      .|..||.|+|.+|+.-|        .-++...-+.||++|..++.+  .-.....-||---|+.|-|=.-|+.. ++|-
T Consensus        97 ~~~slpDEill~IFs~L--------~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rla  167 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCL--------CKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLA  167 (419)
T ss_pred             CcccCCHHHHHHHHHhc--------cHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcc
Confidence            39999999999999876        568999999999999998865  23445566776677777776677754 4664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	377
1s31_A	273	Crystal Structure Analysis Of The Human Tub Protein		1e-42
1c8z_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Leng		4e-42
1i7e_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Boun		1e-41
2fim_A	276	Structure Of The C-Terminal Domain Of Human Tubby-L		4e-39
3c5n_A	246	Structure Of Human Tulp1 In Complex With Ip3 Length		3e-36

>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273

Iteration: 1
 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/281 (37%), Positives = 154/281 (54%), Gaps = 54/281 (19%)
Query: 120 QPGPREFPHQCLIRRNKKT------STFYLYLALTPSFSEKGK--FLLAARRYRRGAHSE 171
           +P P+    +C I R+KK        T++L+L       E GK  FLLA R+ ++   S 
Sbjct: 24  RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLD-----REDGKKVFLLAGRKRKKSKTSN 78
Query: 172 YIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISP 231
           Y+IS+D  DLS+G ++Y+GKL S+ +GT FT+YD     NG  P           K  S 
Sbjct: 79  YLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYD-----NGVNPQ----------KASSS 123
Query: 232 QVPAGNF--EVGQVSYKFNLLKSRGPRRMVCTVKCPSSGETADDIKMK------------ 277
            + +G    E+  V Y+ N+L  +GPR+M  +V  P      + + ++            
Sbjct: 124 TLESGTLRQELAAVCYETNVLGFKGPRKM--SVIVPGMNMVHERVSIRPRNEHETLLARW 181
Query: 278 KAENAGCTI-LRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEET 336
           + +N    I L+NK+P W++  Q + LNFHGRVT ASVKNFQ++            D + 
Sbjct: 182 QNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIH---------GNDPDY 232
Query: 337 VLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
           +++QFG+V +D+FTMDY  PL A QAFAI L+SF +KLACE
Sbjct: 233 IVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 273

>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265

Iteration: 1
 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 105/281 (37%), Positives = 154/281 (54%), Gaps = 54/281 (19%)
Query: 120 QPGPREFPHQCLIRRNKKTS------TFYLYLALTPSFSEKGK--FLLAARRYRRGAHSE 171
           +P P+    +C I R+KK        T++L+L       E GK  FLLA R+ ++   S 
Sbjct: 16  RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLD-----REDGKKVFLLAGRKRKKSKTSN 70
Query: 172 YIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISP 231
           Y+IS+D  DLS+G ++Y+GKL S+ +GT FT+YD     NG  P           K  S 
Sbjct: 71  YLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYD-----NGVNPQ----------KASSS 115
Query: 232 QVPAGNF--EVGQVSYKFNLLKSRGPRRMVCTVKCPSSGETADDIKMK------------ 277
            + +G    E+  V Y+ N+L  +GPR+M  +V  P      + + ++            
Sbjct: 116 TLESGTLRQELAAVCYETNVLGFKGPRKM--SVIVPGMNMVHERVCIRPRNEHETLLARW 173
Query: 278 KAENAGCTI-LRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEET 336
           + +N    I L+NK+P W++  Q + LNFHGRVT ASVKNFQ++            D + 
Sbjct: 174 QNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIH---------GNDPDY 224
Query: 337 VLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
           +++QFG+V +D+FTMDY  PL A QAFAI L+SF +KLACE
Sbjct: 225 IVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265

>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265

Iteration: 1
 Score =  167 bits (422), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/281 (37%), Positives = 154/281 (54%), Gaps = 54/281 (19%)
Query: 120 QPGPREFPHQCLIRRNKKTS------TFYLYLALTPSFSEKGK--FLLAARRYRRGAHSE 171
           +P P+    +C I R+KK        T++L+L       E GK  FLLA R+ ++   S 
Sbjct: 16  RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLD-----REDGKKVFLLAGRKRKKSKTSN 70
Query: 172 YIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISP 231
           Y+IS+D  DLS+G ++Y+GKL S+ +GT FT+YD     NG  P           K  S 
Sbjct: 71  YLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYD-----NGVNPQ----------KASSS 115
Query: 232 QVPAGNF--EVGQVSYKFNLLKSRGPRRMVCTVKCPSSGETADDIKMK------------ 277
            + +G    E+  V Y+ N+L  +GPR+M  +V  P      + + ++            
Sbjct: 116 TLESGTLRQELAAVCYETNVLGFKGPRKM--SVIVPGMNMVHERVCIRPRNEHETLLARW 173
Query: 278 KAENAGCTI-LRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEET 336
           + +N    I L+NK+P W++  + + LNFHGRVT ASVKNFQ++            D + 
Sbjct: 174 QNKNTESIIELQNKTPVWNDDTESYVLNFHGRVTQASVKNFQIIH---------GNDPDY 224
Query: 337 VLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
           +++QFG+V +D+FTMDY  PL A QAFAI L+SF +KLACE
Sbjct: 225 IVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265

>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276

Iteration: 1
 Score =  158 bits (400), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 103/274 (37%), Positives = 143/274 (52%), Gaps = 44/274 (16%)
Query: 120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSF-----SEKGKFLLAARRYRRGAHSEYII 174
           +P P+    +C + R+KK     +Y    PS+     +EK  FLLA R+ +R   + Y+I
Sbjct: 31  RPAPQGRTVRCRLTRDKKGMDRGMY----PSYFLHLDTEKKVFLLAGRKRKRSKTANYLI 86
Query: 175 SLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVP 234
           S+D  +LS+G   ++GKL S+ LG  FT++D     NG  P   RG         S  V 
Sbjct: 87  SIDPTNLSRGGENFIGKLRSNLLGNRFTVFD-----NGQNPQ--RG--------YSTNVA 131
Query: 235 AGNFEVGQVSYKFNLLKSRGPRRMVCTV--------KCPSSGETADDIKMKKAEN---AG 283
           +   E+  V Y+ N+L  RGPRRM   +        + P     A D  + + +N     
Sbjct: 132 SLRQELAAVIYETNVLGFRGPRRMTVIIPGMSAENERVPIRPRNASDGLLVRWQNKTLES 191
Query: 284 CTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGK 343
              L NK P W++    + LNF GRVT ASVKNFQ+V            D + ++LQFG+
Sbjct: 192 LIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHA---------DDPDYIVLQFGR 242
Query: 344 VGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
           V +D FT+DYR PL A QAFAI L+SF  KLACE
Sbjct: 243 VAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276

>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/267 (36%), Positives = 138/267 (51%), Gaps = 44/267 (16%)
Query: 120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPSF-----SEKGKFLLAARRYRRGAHSEYII 174
           +P P+    +C + R+KK     +Y    PS+     +EK  FLLA R+ +R   + Y+I
Sbjct: 7   RPAPQGRTVRCRLTRDKKGMDRGMY----PSYFLHLDTEKKVFLLAGRKRKRSKTANYLI 62
Query: 175 SLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVP 234
           S+D  +LS+G   ++GKL S+ LG  FT++D     NG  P   RG         S  V 
Sbjct: 63  SIDPTNLSRGGENFIGKLRSNLLGNRFTVFD-----NGQNP--QRG--------YSTNVA 107
Query: 235 AGNFEVGQVSYKFNLLKSRGPRRMVCTV--------KCPSSGETADDIKMKKAEN---AG 283
           +   E+  V Y+ N+L  RGPRRM   +        + P     A D  + + +N     
Sbjct: 108 SLRQELAAVIYETNVLGFRGPRRMTVIIPGMSAENERVPIRPRNASDGLLVRWQNKTLES 167
Query: 284 CTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGK 343
              L NK P W++    + LNF GRVT ASVKNFQ+V            D + ++LQFG+
Sbjct: 168 LIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHA---------DDPDYIVLQFGR 218
Query: 344 VGDDIFTMDYRQPLSAFQAFAICLTSF 370
           V +D FT+DYR PL A QAFAI L+SF
Sbjct: 219 VAEDAFTLDYRYPLCALQAFAIALSSF 245

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	377
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	2e-88
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	3e-86
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	9e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-04

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276

 Score =  267 bits (683), Expect = 2e-88
 Identities = 95/272 (34%), Positives = 137/272 (50%), Gaps = 36/272 (13%)

Query: 118 LKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGK-FLLAARRYRRGAHSEYIISL 176
           + +P P+    +C + R+KK     +Y +       + K FLLA R+ +R   + Y+IS+
Sbjct: 29  VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 88

Query: 177 DAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAG 236
           D  +LS+G   ++GKL S+ LG  FT++D+                    +  S  V + 
Sbjct: 89  DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNP---------------QRGYSTNVASL 133

Query: 237 NFEVGQVSYKFNLLKSRGPRRMVCTV--------KCPSSGETADDIKMKKAENA---GCT 285
             E+  V Y+ N+L  RGPRRM   +        + P     A D  + + +N       
Sbjct: 134 RQELAAVIYETNVLGFRGPRRMTVIIPGMSAENERVPIRPRNASDGLLVRWQNKTLESLI 193

Query: 286 ILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVG 345
            L NK P W++    + LNF GRVT ASVKNFQ+V   D            ++LQFG+V 
Sbjct: 194 ELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPDY---------IVLQFGRVA 244

Query: 346 DDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
           +D FT+DYR PL A QAFAI L+SF  KLACE
Sbjct: 245 EDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246

 Score =  260 bits (665), Expect = 3e-86
 Identities = 90/265 (33%), Positives = 132/265 (49%), Gaps = 36/265 (13%)

Query: 118 LKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGK-FLLAARRYRRGAHSEYIISL 176
           + +P P+    +C + R+KK     +Y +       + K FLLA R+ +R   + Y+IS+
Sbjct: 5   VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 64

Query: 177 DAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAG 236
           D  +LS+G   ++GKL S+ LG  FT++D+                    +  S  V + 
Sbjct: 65  DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNP---------------QRGYSTNVASL 109

Query: 237 NFEVGQVSYKFNLLKSRGPRRMVCTV--------KCPSSGETADDIKMKKAENA---GCT 285
             E+  V Y+ N+L  RGPRRM   +        + P     A D  + + +N       
Sbjct: 110 RQELAAVIYETNVLGFRGPRRMTVIIPGMSAENERVPIRPRNASDGLLVRWQNKTLESLI 169

Query: 286 ILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVG 345
            L NK P W++    + LNF GRVT ASVKNFQ+V   D            ++LQFG+V 
Sbjct: 170 ELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPDY---------IVLQFGRVA 220

Query: 346 DDIFTMDYRQPLSAFQAFAICLTSF 370
           +D FT+DYR PL A QAFAI L+SF
Sbjct: 221 EDAFTLDYRYPLCALQAFAIALSSF 245

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 43.0 bits (100), Expect = 9e-05
 Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 7/89 (7%)

Query: 13  SRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRV 72
             S     ++S E     A     +             A +    A L   LL  ++  +
Sbjct: 7   PESVSHPEEASPEEQPEEAGAEASAEEEQLREAEEEEEAEAVEYLAELPEPLLLRVLAEL 66

Query: 73  ETTEDSWPHRQNVVACACVCKRWREITKD 101
                  P  + V AC  VC RW+E+   
Sbjct: 67  -------PATELVQACRLVCLRWKELVDG 88

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 7/54 (12%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 56  SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLS 109
           S    + +++ +++  +   +D         + + VC+RW +I  +  +   ++
Sbjct: 12  SCVATVDDVIEQVMTYITDPKD-------RDSASLVCRRWFKIDSETREHVTMA 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	377
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	100.0
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	100.0
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.3
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.29
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.18
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.14
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	95.75
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	95.69
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	95.17
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	94.77
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	94.62

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*

Probab=100.00  E-value=1.1e-87  Score=647.90  Aligned_cols=235  Identities=41%  Similarity=0.681  Sum_probs=183.9

Q ss_pred             CCccccCCCCCCCceEEEEEeeecC------ceeEEeeecCCCCCCCCeeEEEEeccccCCceeEEEeccCCCccCCccc
Q 017118          114 FPSCLKQPGPREFPHQCLIRRNKKT------STFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNA  187 (377)
Q Consensus       114 fp~sL~qPgPrd~~iQC~I~R~K~~------~tY~LYl~l~~~~~d~gkfLLaArK~rr~~tSnYiISld~~dlsr~s~~  187 (377)
                      +..||+||+|+|++|||+|+|||+|      ++|||||+     .++++|||||||+++++++||+||+|++||+|++++
T Consensus        25 ~~~fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~   99 (276)
T 2fim_A           25 PREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGEN   99 (276)
T ss_dssp             CTTGGGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC------C
T ss_pred             HHHHhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhcccCCce
Confidence            5569999999999999999999987      69999996     477899999999999999999999999999999999


Q ss_pred             eeeeecccceecEEEEecCCCCCCCCCCCCCCcccccccccccCCCCCcceeEEEEEEeecccCCCCCceeEEEeeCCCC
Q 017118          188 YVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCTVKCPSS  267 (377)
Q Consensus       188 yvGKLRSNflGTkF~IYD~gpp~~~~~~~~~r~~r~~~~k~vsp~v~~g~~ela~V~Ye~Nvlg~rGPRrM~v~i~~P~~  267 (377)
                      |||||||||+||+|+|||+|++.+               +..+|+++.+++|||+|.||+|++|++|||+|+|+||....
T Consensus       100 yvGKLrSNflGtkF~iyD~G~~p~---------------~~~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~~~  164 (276)
T 2fim_A          100 FIGKLRSNLLGNRFTVFDNGQNPQ---------------RGYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMSA  164 (276)
T ss_dssp             EEEEEEECSSSSEEEEECSSBCGG---------------GCTTSCGGGBCCEEEEEEEC---------CCEEEEEECBCT
T ss_pred             EEEEEEEccCCCEEEEECCCCCcc---------------cccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCccc
Confidence            999999999999999999984322               12356677889999999999999999999999999986432


Q ss_pred             CCc--------cchhhhhhc---ccCCeeEeeeCCCccccCCceEEeccCCcccccccceeEEEeccCCCCCCCCCCCCe
Q 017118          268 GET--------ADDIKMKKA---ENAGCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEET  336 (377)
Q Consensus       268 ~e~--------~~~~~~~~~---~~~~~~~L~nK~P~wne~~~~y~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~d~~~  336 (377)
                      +..        .++....+.   ..++.++|+||+|+|||++|||||||+||||+|||||||||+++         |++.
T Consensus       165 ~~~~~~~~p~~~~~~ll~~~~~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~aSvKNFQLv~~~---------d~~~  235 (276)
T 2fim_A          165 ENERVPIRPRNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHAD---------DPDY  235 (276)
T ss_dssp             TSCBCCCCCSSTTCSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSCCTTCEEEECTT---------CTTS
T ss_pred             CCCEecccCCCcccccchhhhccCCcceEeeeccCCcccccCCEEEEecCCeeeccccceEEEEecC---------CCCE
Confidence            111        111122221   22378999999999999999999999999999999999999875         5789


Q ss_pred             EEEEeeeecCCeeEEEccCCCCHHHHHHHHHHhcccccccC
Q 017118          337 VLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE  377 (377)
Q Consensus       337 iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfdtKlACE  377 (377)
                      ||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus       236 ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace  276 (276)
T 2fim_A          236 IVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE  276 (276)
T ss_dssp             CSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred             EEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence            99999999999999999999999999999999999999998

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A

Probab=100.00  E-value=5.2e-85  Score=620.34  Aligned_cols=227  Identities=40%  Similarity=0.677  Sum_probs=187.8

Q ss_pred             ccccCCCCCCCceEEEEEeeecC------ceeEEeeecCCCCCCCCeeEEEEeccccCCceeEEEeccCCCccCCcccee
Q 017118          116 SCLKQPGPREFPHQCLIRRNKKT------STFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYV  189 (377)
Q Consensus       116 ~sL~qPgPrd~~iQC~I~R~K~~------~tY~LYl~l~~~~~d~gkfLLaArK~rr~~tSnYiISld~~dlsr~s~~yv  189 (377)
                      .||+||+|+|++|||+|+|||+|      ++||||++     .++++|||||||++++++|||+||+|++||+|++++||
T Consensus         3 ~fl~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~-----~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yv   77 (246)
T 3c5n_A            3 EFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFI   77 (246)
T ss_dssp             TGGGSCCCTTCEEEEEEEECC------CCCEEEEEES-----SSSCCEEEEEEECTTCSSCEEEEESCTTC------CEE
T ss_pred             hHcCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe-----CCCcEEEEeeeeccCCCCceEEEEeCccccccCCceEE
Confidence            58999999999999999999998      58999986     35678999999999999999999999999999999999


Q ss_pred             eeecccceecEEEEecCCCCCCCCCCCCCCcccccccccccCCCCCcceeEEEEEEeecccCCCCCceeEEEeeCCCCCC
Q 017118          190 GKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCTVKCPSSGE  269 (377)
Q Consensus       190 GKLRSNflGTkF~IYD~gpp~~~~~~~~~r~~r~~~~k~vsp~v~~g~~ela~V~Ye~Nvlg~rGPRrM~v~i~~P~~~e  269 (377)
                      |||||||+||+|+|||+|++.+               +..+|+++.+++|||+|.||+|++|++|||+|+|+||.+..+.
T Consensus        78 GKLrsNf~Gt~F~iyD~g~~p~---------------~~~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~iP~~~~~~  142 (246)
T 3c5n_A           78 GKLRSNLLGNRFTVFDNGQNPQ---------------RGYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMSAEN  142 (246)
T ss_dssp             EEEEECSSSSEEEEECSCBCGG---------------GCTTSCGGGBCCEEEEEEECCCCCC---CCCEEEEEECBCTTS
T ss_pred             EEEEEccCCCEEEEECCCCCcc---------------cccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcccCC
Confidence            9999999999999999984322               1235667788999999999999999999999999998743211


Q ss_pred             c--------cchhhhhhc---ccCCeeEeeeCCCccccCCceEEeccCCcccccccceeEEEeccCCCCCCCCCCCCeEE
Q 017118          270 T--------ADDIKMKKA---ENAGCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVL  338 (377)
Q Consensus       270 ~--------~~~~~~~~~---~~~~~~~L~nK~P~wne~~~~y~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~d~~~ii  338 (377)
                      .        .++..+.+.   ..++.++|+||+|+|||++|||||||+||||+|||||||||+++         |++.||
T Consensus       143 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~nK~P~w~e~~~~y~LnF~GRvt~aSvKNFqLv~~~---------~~~~iv  213 (246)
T 3c5n_A          143 ERVPIRPRNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHAD---------DPDYIV  213 (246)
T ss_dssp             CBCCCCCSSTTSSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCTTSCCBCCTTCEEEEBTT---------BTTSCS
T ss_pred             CEeeccCCCccccchhhhhccCCcceEEEeccCCcccccCCEEEEecCCeeeccccceEEEEecC---------CCCEEE
Confidence            1        111122221   12378999999999999999999999999999999999999875         568999


Q ss_pred             EEeeeecCCeeEEEccCCCCHHHHHHHHHHhcc
Q 017118          339 LQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFG  371 (377)
Q Consensus       339 LQFGKv~kd~F~mD~~yPlS~~QAFaI~Lssfd  371 (377)
                      ||||||++|+|||||+|||||||||||||||||
T Consensus       214 lqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD  246 (246)
T 3c5n_A          214 LQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD  246 (246)
T ss_dssp             EEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred             EEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence            999999999999999999999999999999998

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.30  E-value=2.1e-07  Score=67.07  Aligned_cols=41  Identities=32%  Similarity=0.548  Sum_probs=33.6

Q ss_pred             CCCCCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHH
Q 017118           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (377)
Q Consensus        53 ~~~~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~  101 (377)
                      ++..|+.||+|+|..|+.+|       | .++++.|+.|||+|+.++.+
T Consensus         5 ~~~~~~~LP~eil~~I~~~L-------~-~~dl~~~~~Vck~w~~~~~~   45 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCL-------C-LPELLKVSGVCKRWYRLASD   45 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTS-------C-GGGHHHHHTTCHHHHHHHTC
T ss_pred             CCCCHHHCCHHHHHHHHHcC-------C-HHHHHHHHHHHHHHHHHhCC
Confidence            45679999999999999999       4 47899999999999998753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.29  E-value=6.8e-05  Score=69.50  Aligned_cols=40  Identities=30%  Similarity=0.519  Sum_probs=34.5

Q ss_pred             CCCCCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHH
Q 017118           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (377)
Q Consensus        53 ~~~~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~  100 (377)
                      ++..|.+||+|+|..|+.+|       |.+ +++.|+.|||+|++++.
T Consensus         5 ~~~~~~~LP~eil~~If~~L-------~~~-d~~~~~~vc~~W~~~~~   44 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCL-------CLP-ELLKVSGVCKRWYRLAS   44 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTS-------CHH-HHHHTTSSCHHHHHHHT
T ss_pred             ccCChhhCCHHHHHHHHHhC-------CHH-HHHHHHHHHHHHHHHhc
Confidence            46789999999999999999       544 88999999999999884

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.18  E-value=0.00013  Score=70.93  Aligned_cols=40  Identities=33%  Similarity=0.628  Sum_probs=34.7

Q ss_pred             CCCCCCCCHHHHHHHHhhhhccCCCCCccccee-eecccchhHHHHHHH
Q 017118           54 SGSWAGLLPELLGEIIRRVETTEDSWPHRQNVV-ACACVCKRWREITKD  101 (377)
Q Consensus        54 ~~~wa~lppell~~i~~r~e~~~~~wp~r~~vv-~ca~vc~~Wr~~~~~  101 (377)
                      ......||+|||.+|+.||       |.+ +++ .|++|||+||.++.+
T Consensus        48 ~~~~~~LP~ell~~Il~~L-------p~~-~L~~r~~~VCk~Wr~l~~~   88 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAEL-------PAT-ELVQACRLVCLRWKELVDG   88 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTS-------CHH-HHHHTGGGTCHHHHHHHTS
T ss_pred             ccChhhCCHHHHHHHHHcC-------CHH-HHHHHHHHHhHHHHHHhcC
Confidence            3457889999999999999       874 788 999999999998753

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.14  E-value=9.2e-05  Score=73.73  Aligned_cols=42  Identities=19%  Similarity=0.305  Sum_probs=31.2

Q ss_pred             CCCCCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHH
Q 017118           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (377)
Q Consensus        53 ~~~~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~  101 (377)
                      +...|+.||+|+|..|+.+|       |..+++++|+.|||+|+++...
T Consensus         2 ~~d~~~~LPdevL~~If~~L-------~~~~d~~~~s~vck~W~~~~~~   43 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFI-------QLDKDRNSVSLVCKSWYEIERW   43 (594)
T ss_dssp             --------CHHHHHHHHHTC-------CCHHHHHHHHTSCHHHHHHHHH
T ss_pred             cccchhhCCHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHhhhh
Confidence            56789999999999999999       8778999999999999999443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=95.75  E-value=0.0032  Score=59.94  Aligned_cols=40  Identities=18%  Similarity=0.304  Sum_probs=35.0

Q ss_pred             CCCCCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHH
Q 017118           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (377)
Q Consensus        53 ~~~~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~  100 (377)
                      ...-.+.||+||+..|+..|       + .++++.|+.|||+|++++.
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l-------~-~~~l~~~~~v~~~~~~~~~   54 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFL-------E-PKDLLQAAQTCRYWRILAE   54 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTS-------C-HHHHHHHTTSCHHHHHHHT
T ss_pred             cCChhHHCCHHHHHHHHHhC-------C-HHHHHHHHHHhHHHHhhcC
Confidence            56678999999999999999       4 3689999999999999874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=95.69  E-value=0.0014  Score=62.26  Aligned_cols=41  Identities=15%  Similarity=0.289  Sum_probs=35.8

Q ss_pred             CCCCCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHH
Q 017118           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (377)
Q Consensus        53 ~~~~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~  101 (377)
                      +..-++.||+|+|..|+..|       |. ++++.|+.|||.|++++.+
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l-------~~-~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTS-------CH-HHHHHHHTTCHHHHHHHTT
T ss_pred             ccCChHHCCHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHHcC
Confidence            55668889999999999999       54 5899999999999998764

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=95.17  E-value=0.0023  Score=62.65  Aligned_cols=38  Identities=13%  Similarity=0.228  Sum_probs=33.5

Q ss_pred             CCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHH
Q 017118           56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (377)
Q Consensus        56 ~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~  101 (377)
                      -|.+||.|++..|+..|       ++ +|+..||.|||.||.++.+
T Consensus         4 ~l~~LP~ei~l~IlsfL-------~p-~DL~~l~~vcr~Wr~la~D   41 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFL-------SP-HDLCQLGSTNHYWNETVRD   41 (312)
T ss_dssp             HHHHSCHHHHHHHHHTS-------CH-HHHHHHHTTCHHHHHHHTC
T ss_pred             hhHhCCHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHhcc
Confidence            37789999999999999       33 5799999999999999865

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=94.77  E-value=0.0068  Score=60.37  Aligned_cols=38  Identities=13%  Similarity=0.485  Sum_probs=33.6

Q ss_pred             CCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHH
Q 017118           57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (377)
Q Consensus        57 wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~  101 (377)
                      .+.||+|+|..|+.+|       +..+++++|+.|||+|+.+...
T Consensus        13 ~~~LPdeil~~I~~~L-------~~~~d~~~~s~vck~W~~~~~~   50 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYI-------TDPKDRDSASLVCRRWFKIDSE   50 (592)
T ss_dssp             CCCCGGGTHHHHHTTC-------CCHHHHHHHTTSCHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhc-------CCHHHHHHHHHHhHHHHHhhhc
Confidence            4589999999999999       5678999999999999999543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=94.62  E-value=0.0064  Score=57.97  Aligned_cols=41  Identities=22%  Similarity=0.472  Sum_probs=34.1

Q ss_pred             CCCCCCCCCHH----HHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHH
Q 017118           53 SSGSWAGLLPE----LLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (377)
Q Consensus        53 ~~~~wa~lppe----ll~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~  101 (377)
                      +..--+.||+|    ||..|+..|+.        +++..|+.|||+|++++.+
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~   51 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD   51 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcC
Confidence            44556779999    99999999933        6889999999999988853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	377
d1c8za_	265	d.23.1.1 (A:) Transcriptional factor tubby, C-term	2e-93
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	3e-04

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  278 bits (713), Expect = 2e-93
 Identities = 96/274 (35%), Positives = 138/274 (50%), Gaps = 36/274 (13%)

Query: 118 LKQPGPREFPHQCLIRRNKKTST---FYLYLALTPSFSEKGKFLLAARRYRRGAHSEYII 174
             +P P+    +C I R+KK      F  Y         K  FLLA R+ ++   S Y+I
Sbjct: 14  ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLI 73

Query: 175 SLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVP 234
           S+D  DLS+G ++Y+GKL S+ +GT FT+YD+      A  S+                 
Sbjct: 74  SVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT------------ 121

Query: 235 AGNFEVGQVSYKFNLLKSRGPRRMVCTVKC-----------PSSGETADDIKMKKAENAG 283
               E+  V Y+ N+L  +GPR+M   V             P +       + +      
Sbjct: 122 -LRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVCIRPRNEHETLLARWQNKNTES 180

Query: 284 CTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGK 343
              L+NK+P W++  Q + LNFHGRVT ASVKNFQ++            D + +++QFG+
Sbjct: 181 IIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIH---------GNDPDYIVMQFGR 231

Query: 344 VGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
           V +D+FTMDY  PL A QAFAI L+SF +KLACE
Sbjct: 232 VAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 3e-04
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 8/45 (17%)

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101
           W  L  ELL  I   +   E        ++  + VCKRW  +  D
Sbjct: 1   WDSLPDELLLGIFSCLCLPE--------LLKVSGVCKRWYRLASD 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	377
d1c8za_	265	Transcriptional factor tubby, C-terminal domain {M	100.0
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.32
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.49
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	97.27
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	96.45

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.5e-82  Score=604.22  Aligned_cols=239  Identities=40%  Similarity=0.678  Sum_probs=201.5

Q ss_pred             CCccccCCCCCCCceEEEEEeeecCc------eeEEeeecCCCCCCCCeeEEEEeccccCCceeEEEeccCCCccCCccc
Q 017118          114 FPSCLKQPGPREFPHQCLIRRNKKTS------TFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNA  187 (377)
Q Consensus       114 fp~sL~qPgPrd~~iQC~I~R~K~~~------tY~LYl~l~~~~~d~gkfLLaArK~rr~~tSnYiISld~~dlsr~s~~  187 (377)
                      ...||+||||+|++|||+|+|||++.      +|+|||+..   .++++|||||||+|+++++|||||+|++|++|++++
T Consensus        10 ~~~Fl~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~~---~gk~kfLLaArK~r~~~~~~yiIS~~~~d~sr~s~~   86 (265)
T d1c8za_          10 LEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDRE---DGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDS   86 (265)
T ss_dssp             HHHHHHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEECT---TSCEEEEEEEEEEESSSSEEEEEESCHHHHTTTCCC
T ss_pred             HHHHhcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEccC---CCceeEEEEEeeecCCCcceEEEEccHHHhcccccc
Confidence            34589999999999999999999875      577777632   244579999999999999999999999999999999


Q ss_pred             eeeeecccceecEEEEecCCCCCCCCCCCCCCcccccccccccCCCCCcceeEEEEEEeecccCCCCCceeEEEeeCCCC
Q 017118          188 YVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCTVKCPSS  267 (377)
Q Consensus       188 yvGKLRSNflGTkF~IYD~gpp~~~~~~~~~r~~r~~~~k~vsp~v~~g~~ela~V~Ye~Nvlg~rGPRrM~v~i~~P~~  267 (377)
                      |||||||||+||+|+|||+|++.+.++.             .++.....++|||+|.||+|+||++|||+|+|+||....
T Consensus        87 yvGKlrSNflGTkF~iYD~G~~p~~~~~-------------~~~~~~~~r~ela~V~Ye~n~l~~rGPR~m~~~ip~~~~  153 (265)
T d1c8za_          87 YIGKLRSNLMGTKFTVYDNGVNPQKASS-------------STLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNM  153 (265)
T ss_dssp             CSEEEEECTTSSEEEEECSSBCGGGCCT-------------TGGGSSSBCCEEEEEEECCCCSSCCSCCCEEEEEECBCT
T ss_pred             eeEEeeccccCCEEEEecCCCCcccccc-------------cccccCccceeeeEEEEeeehhccCCCceeEEEecCCCc
Confidence            9999999999999999999955443321             112223457899999999999999999999999986321


Q ss_pred             CCc---c-----chhhhhhc---ccCCeeEeeeCCCccccCCceEEeccCCcccccccceeEEEeccCCCCCCCCCCCCe
Q 017118          268 GET---A-----DDIKMKKA---ENAGCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEET  336 (377)
Q Consensus       268 ~e~---~-----~~~~~~~~---~~~~~~~L~nK~P~wne~~~~y~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~d~~~  336 (377)
                      ...   .     ........   ..+++++|+||+|+||+++++|+|||+|||++|||||||||+++         ++++
T Consensus       154 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~k~P~~n~~~~~~~LnF~gRv~~~SvKNFql~~~~---------~~~~  224 (265)
T d1c8za_         154 VHERVCIRPRNEHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGN---------DPDY  224 (265)
T ss_dssp             TSCBCCCCCSSTTSSHHHHHHTTCCSSEEEEEECCCEEETTTTEEEEEETTEEEECBTTEEEEECTT---------CTTS
T ss_pred             cccccccCCCCcchhhhHHhhccCcccceEEecCCCeeeccCCEEEeccCCEEeccccceEEEEeCC---------CCCE
Confidence            111   0     01122221   22488999999999999999999999999999999999999865         5688


Q ss_pred             EEEEeeeecCCeeEEEccCCCCHHHHHHHHHHhcccccccC
Q 017118          337 VLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE  377 (377)
Q Consensus       337 iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfdtKlACE  377 (377)
                      +|||||||++|+|+|||+|||||+|||||||||||+|||||
T Consensus       225 ~~lqfgKv~~~~f~~d~~~Pls~~qaF~i~lssf~~Klace  265 (265)
T d1c8za_         225 IVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE  265 (265)
T ss_dssp             CSEEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHSSCCCC
T ss_pred             EEEEEEEccCCeEEEEecCCCCHHHHHHHHHHHhccccccC
Confidence            99999999999999999999999999999999999999998

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=8.5e-08  Score=65.35  Aligned_cols=37  Identities=32%  Similarity=0.612  Sum_probs=33.2

Q ss_pred             CCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHH
Q 017118           57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (377)
Q Consensus        57 wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~  101 (377)
                      |..||.|++..|+.+|       |. +|++.|+.|||+|++++.+
T Consensus         1 f~~LP~eil~~If~~L-------~~-~dl~~~~~Vcr~w~~l~~~   37 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCL-------CL-PELLKVSGVCKRWYRLASD   37 (41)
T ss_dssp             CCSSCHHHHHHHHTTS-------CG-GGHHHHHTTCHHHHHHHTC
T ss_pred             CCcCCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhCC
Confidence            8899999999999999       53 5899999999999998753

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=1.2e-05  Score=62.66  Aligned_cols=41  Identities=20%  Similarity=0.333  Sum_probs=35.0

Q ss_pred             CCCCCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHH
Q 017118           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (377)
Q Consensus        53 ~~~~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~  101 (377)
                      +..-=+.||+|++..|+..|       |. +|+++|++|||+|++++.+
T Consensus        15 ~~D~i~~LP~Eil~~Ils~L-------d~-~dL~~~~~vcr~w~~l~~~   55 (102)
T d2ovrb1          15 QRDFISLLPKELALYVLSFL-------EP-KDLLQAAQTCRYWRILAED   55 (102)
T ss_dssp             CCSTTTSSCHHHHHHHHTTS-------CH-HHHHHHTTSCHHHHHHHTC
T ss_pred             ccCChhhCCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHHCC
Confidence            45556779999999999999       33 5899999999999998754

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=2.8e-05  Score=60.83  Aligned_cols=38  Identities=16%  Similarity=0.309  Sum_probs=32.9

Q ss_pred             CCCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHH
Q 017118           55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (377)
Q Consensus        55 ~~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~  100 (377)
                      +-.+.||+||+..|+..|       +. +++++|+.|||+|+.++.
T Consensus         4 D~~~~LP~Ell~~I~s~L-------d~-~dL~~~s~Vcr~W~~~~~   41 (100)
T d1nexb1           4 DLITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIR   41 (100)
T ss_dssp             CHHHHSCHHHHHHHHTTS-------CH-HHHHHHTTTCHHHHHHHH
T ss_pred             CchhhCCHHHHHHHHHCC-------CH-HHHHHHHHHHHHHHHHHH
Confidence            345689999999999999       44 589999999999999874

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0003  Score=56.16  Aligned_cols=41  Identities=22%  Similarity=0.464  Sum_probs=33.1

Q ss_pred             CCCCCCCCC----HHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHH
Q 017118           53 SSGSWAGLL----PELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (377)
Q Consensus        53 ~~~~wa~lp----pell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~  101 (377)
                      +.+-=++||    +|++..|+..|+.        +++..|+.|||+|++++.+
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~--------~dL~~~s~Vck~W~~l~~d   51 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD   51 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHHcC
Confidence            334445566    6999999999943        6899999999999999874