Citrus Sinensis ID: 017125

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------
Protein Sequence
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Secondary Structure (PSIPRED)
cccccccccEEEEcccccEEEccccccccccccccccccccccccccccccccccccHHHHHccccEEEcccccccccccHHHHHHHHHHHHccccccccccccEEEcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccEEEEEcccccEEEEcccccccccccEEEEEccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccEEcccHHHHHHHHccccccccEEEcccccEEEEcccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHccEEEEccccccccHHHHHHHHHHHcccccccEEEEcccccccccccccHHcccccccccccEEccHHcccccccEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEcccEEEEEEcccccccEEEEccEEEEccccccccccccccEEcHHHHHcHHHEEEEccEEccEEccHHHHHHHHHHHHHccccccHHHccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEHHHHHHHHcccccEEEEEEccccEEEEEEEccEEcHHHcEEEcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHcccccccccEEEEcccccEEEEccHHHHcHHHHccHHHHccccccHHHHHHHHHHcccHHHHHHHHccEEEEcHHHccccHHHHHHHHHHHHccccccccEEcccccccHHHHHHHHHHHcHHHHHccEEHHHHHHHcHHHHHHHcc
Coil and Loop (DISEMBL)
madaediqplvcdngtgmvkagfagddapravfpsivgrprhtgvmvgmgqkdayvgdeaqskrgiltlkypiehgivnnwddmEKIWHHTFYNelrvapeehpvllteaplnpkanrEKMTQIMFETFNTPAMYVAIQAVLSLYASGrttgivldsgdgvshtvpiyegyalpHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEksyelpdgqvitigaerfrcpevlfqpsmigmesagihettynsimkcdvdirKDLYGNivlsggstmfpgiADRMSKEItalapssmkikvvapperkysVWIGGSILASLSTFQQMWIAKaeydesgpsivhrkcf
Flexible Loop (DISEMBL)
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLteaplnpkanREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILtergysftttaerEIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAeydesgpsivhrkcf
Low Complexity Region (SEG)
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Disordered region (IsUnstruct)
*********LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTE***********MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEY*************
Disordered Region (DISOPRED)
****EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV**GMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYE***************YELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Disordered Region (DISEMBL)
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Disordered Region (DISPRO)
******IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	377	2.2.26 [Sep-21-2011]
O81221	377	Actin OS=Gossypium hirsut	N/A	no	1.0	1.0	0.976	0.0
Q10DV7	377	Actin-1 OS=Oryza sativa s	yes	no	1.0	1.0	0.973	0.0
A2XLF2	377	Actin-1 OS=Oryza sativa s	N/A	no	1.0	1.0	0.973	0.0
P30171	377	Actin-97 OS=Solanum tuber	N/A	no	1.0	1.0	0.970	0.0
P0CJ47	377	Actin-3 OS=Arabidopsis th	yes	no	1.0	1.0	0.968	0.0
P0CJ46	377	Actin-1 OS=Arabidopsis th	yes	no	1.0	1.0	0.968	0.0
Q05214	377	Actin OS=Nicotiana tabacu	N/A	no	1.0	1.0	0.968	0.0
P46258	377	Actin-3 OS=Pisum sativum	N/A	no	1.0	1.0	0.970	0.0
P53496	377	Actin-11 OS=Arabidopsis t	yes	no	1.0	1.0	0.962	0.0
P53497	377	Actin-12 OS=Arabidopsis t	yes	no	1.0	1.0	0.968	0.0

>sp|O81221|ACT_GOSHI Actin OS=Gossypium hirsutum PE=3 SV=1

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/377 (97%), Positives = 374/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTDALMKILTERGYSFTTTAEREIVRD+KEKLAYIALDYEQELET+K SS++EK
Sbjct: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSSIEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPSMIGME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           LSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KAEYDESGPSIVHRKCF 377
           KAEYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.
Gossypium hirsutum (taxid: 3635)

>sp|Q10DV7|ACT1_ORYSJ Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/377 (97%), Positives = 374/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTD LMKILTERGYSFTTTAEREIVRDMKEKL+YIALDY+QE+ETAK SS+VEK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYDQEMETAKTSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPS IGME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSFIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           LSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KAEYDESGPSIVHRKCF 377
           KAEYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XLF2|ACT1_ORYSI Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/377 (97%), Positives = 374/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTD LMKILTERGYSFTTTAEREIVRDMKEKL+YIALDY+QE+ETAK SS+VEK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYDQEMETAKTSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPS IGME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSFIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           LSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KAEYDESGPSIVHRKCF 377
           KAEYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P30171|ACT11_SOLTU Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/377 (97%), Positives = 375/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRH+GVMVGMGQKDAYVGDEA
Sbjct: 1   MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHSGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTD+LMKILTERGYSFTT+AEREIVRD+KEKLAYIALDYEQELET+K SS+VEK
Sbjct: 181 DLAGRDLTDSLMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELETSKTSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPSMIGME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           LSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KAEYDESGPSIVHRKCF 377
           KAEYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.

Solanum tuberosum (taxid: 4113)

>sp|P0CJ47|ACT3_ARATH Actin-3 OS=Arabidopsis thaliana GN=ACT3 PE=1 SV=1

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/377 (96%), Positives = 373/377 (98%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTDALMKILTERGYSFTTTAEREIVRD+KEKL YIALDYEQELETAK SS+VEK
Sbjct: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDIKEKLCYIALDYEQELETAKTSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           +YELPDGQVITIG+ERFRCPEVL+QPSMIGME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 NYELPDGQVITIGSERFRCPEVLYQPSMIGMENAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           LSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KAEYDESGPSIVHRKCF 377
           KAEYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth. This is considered as one of the reproductive actins.

Arabidopsis thaliana (taxid: 3702)

>sp|P0CJ46|ACT1_ARATH Actin-1 OS=Arabidopsis thaliana GN=ACT1 PE=1 SV=1

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/377 (96%), Positives = 373/377 (98%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTDALMKILTERGYSFTTTAEREIVRD+KEKL YIALDYEQELETAK SS+VEK
Sbjct: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDIKEKLCYIALDYEQELETAKTSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           +YELPDGQVITIG+ERFRCPEVL+QPSMIGME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 NYELPDGQVITIGSERFRCPEVLYQPSMIGMENAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           LSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KAEYDESGPSIVHRKCF 377
           KAEYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth. This is considered as one of the reproductive actins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q05214|ACT1_TOBAC Actin OS=Nicotiana tabacum PE=3 SV=1

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/377 (96%), Positives = 373/377 (98%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL+YIALD+EQE+ET+K SS+VEK
Sbjct: 181 DLAGRDLTDHLMKILTERGYSFTTTAEREIVRDVKEKLSYIALDFEQEMETSKTSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPSMIGME+AGIHETTYNSIMKCDVDIRKDLYG IV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGKIV 300

Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KAEYDESGPSIVHRKCF 377
           KAEYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.

Nicotiana tabacum (taxid: 4097)

>sp|P46258|ACT3_PEA Actin-3 OS=Pisum sativum PE=2 SV=1

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/377 (97%), Positives = 372/377 (98%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MA+AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MAEAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTD LMKILTERGY+FTT+AEREIVRDMKEKLAYIALDYEQELETAK SSAVEK
Sbjct: 181 DLAGRDLTDGLMKILTERGYTFTTSAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           +YELPDGQVITIGAERFRCPEV  QPSMIGMES GIHETT+NSIMKCDVDIRKDLYGNIV
Sbjct: 241 TYELPDGQVITIGAERFRCPEVTVQPSMIGMESPGIHETTFNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KAEYDESGPSIVHRKCF 377
           KAEYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.

Pisum sativum (taxid: 3888)

>sp|P53496|ACT11_ARATH Actin-11 OS=Arabidopsis thaliana GN=ACT11 PE=1 SV=1

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/377 (96%), Positives = 372/377 (98%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTD LMKILTERGYSFTT+AEREIVRD+KEKLAYIALDYEQE+ETA  SS+VEK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQEMETANTSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIG ERFRCPEVLFQPS++GME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGGERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           LSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KAEYDESGPSIVHRKCF 377
           KAEYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth. This is considered as one of the reproductive actins.

Arabidopsis thaliana (taxid: 3702)

>sp|P53497|ACT12_ARATH Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=1

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/377 (96%), Positives = 371/377 (98%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTD LMKILTERGYSFTTTAEREIVRDMKEKL+YIALDYEQELET+K SS+VEK
Sbjct: 181 DLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           S+ELPDGQVITIGAERFRCPEVLFQPSMIGME+ GIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SFELPDGQVITIGAERFRCPEVLFQPSMIGMENPGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           LSGG+TMF GI DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KAEYDESGPSIVHRKCF 377
           KAEYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth. This is considered as one of the reproductive actins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	377
346683575	377	actin 4 [Mangifera indica]	1.0	1.0	0.989	0.0
300484337	377	actin [Citrus maxima]	1.0	1.0	0.989	0.0
356530693	377	PREDICTED: actin-like [Glycine max]	1.0	1.0	0.989	0.0
449437577	377	PREDICTED: actin-like [Cucumis sativus]	1.0	1.0	0.984	0.0
333595899	377	actin [Platycodon grandiflorus]	1.0	1.0	0.986	0.0
224088196	377	actin 3 [Populus trichocarpa] gi|2241378	1.0	1.0	0.984	0.0
118481291	377	unknown [Populus trichocarpa]	1.0	1.0	0.984	0.0
359806047	377	uncharacterized protein LOC100807341 [Gl	1.0	1.0	0.986	0.0
356500435	377	PREDICTED: actin-like [Glycine max]	1.0	1.0	0.986	0.0
255579745	377	actin, putative [Ricinus communis] gi|22	1.0	1.0	0.984	0.0

>gi|346683575|gb|AEO45960.1| actin 4 [Mangifera indica]

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/377 (98%), Positives = 375/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAK SS+VEK
Sbjct: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPSMIGME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KAEYDESGPSIVHRKCF 377
           KAEYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Source: Mangifera indica

Species: Mangifera indica

Genus: Mangifera

Family: Anacardiaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300484337|gb|ADK20401.1| actin [Citrus maxima]

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/377 (98%), Positives = 376/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MA+AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MAEAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAK SSAVEK
Sbjct: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPSMIGME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KAEYDESGPSIVHRKCF 377
           KAEYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Source: Citrus maxima

Species: Citrus maxima

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530693|ref|XP_003533915.1| PREDICTED: actin-like [Glycine max]

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/377 (98%), Positives = 374/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTDALMKILTERGYSFTTTAEREIVRD+KEKLAYIALDYEQELETAK SSAVEK
Sbjct: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETAKTSSAVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPSMIGMES GIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESPGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KAEYDESGPSIVHRKCF 377
           KAEYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437577|ref|XP_004136568.1| PREDICTED: actin-like [Cucumis sativus] gi|449511328|ref|XP_004163927.1| PREDICTED: actin-like [Cucumis sativus]

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/377 (98%), Positives = 376/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD+EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELET+K SS+VEK
Sbjct: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPSMIGME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KAEYDESGPSIVHRKCF 377
           KAEYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|333595899|gb|AEF58501.1| actin [Platycodon grandiflorus]

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/377 (98%), Positives = 375/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAK SS+VEK
Sbjct: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPSMIGME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KAEYDESGPSIVHRKCF 377
           KAEYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Source: Platycodon grandiflorus

Species: Platycodon grandiflorus

Genus: Platycodon

Family: Campanulaceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088196|ref|XP_002308365.1| actin 3 [Populus trichocarpa] gi|224137838|ref|XP_002322664.1| actin 7 [Populus trichocarpa] gi|118481698|gb|ABK92789.1| unknown [Populus trichocarpa] gi|118483656|gb|ABK93722.1| unknown [Populus trichocarpa] gi|118487386|gb|ABK95521.1| unknown [Populus trichocarpa] gi|222854341|gb|EEE91888.1| actin 3 [Populus trichocarpa] gi|222867294|gb|EEF04425.1| actin 7 [Populus trichocarpa] gi|301331528|gb|ADK70741.1| actin [Populus tomentosa] gi|301331531|gb|ADK70742.1| actin [Populus tomentosa] gi|301331533|gb|ADK70743.1| actin [Populus tomentosa] gi|301331536|gb|ADK70744.1| actin [Populus tomentosa] gi|301331540|gb|ADK70745.1| actin [Populus tomentosa] gi|301331543|gb|ADK70746.1| actin [Populus tomentosa] gi|301331546|gb|ADK70747.1| actin [Populus tomentosa] gi|301331549|gb|ADK70748.1| actin [Populus tomentosa] gi|301331552|gb|ADK70749.1| actin [Populus tomentosa] gi|301331555|gb|ADK70750.1| actin [Populus tomentosa] gi|301331558|gb|ADK70751.1| actin [Populus tomentosa] gi|301331560|gb|ADK70752.1| actin [Populus tomentosa] gi|301331563|gb|ADK70753.1| actin [Populus tomentosa] gi|301331566|gb|ADK70754.1| actin [Populus tomentosa] gi|301331569|gb|ADK70755.1| actin [Populus tomentosa] gi|301331573|gb|ADK70756.1| actin [Populus tomentosa] gi|301331576|gb|ADK70757.1| actin [Populus tomentosa] gi|301331579|gb|ADK70758.1| actin [Populus tomentosa] gi|301331582|gb|ADK70759.1| actin [Populus tomentosa] gi|301331585|gb|ADK70760.1| actin [Populus tomentosa] gi|301331588|gb|ADK70761.1| actin [Populus tomentosa] gi|301331591|gb|ADK70762.1| actin [Populus tomentosa] gi|301331594|gb|ADK70763.1| actin [Populus tomentosa] gi|301331597|gb|ADK70764.1| actin [Populus tomentosa] gi|301331599|gb|ADK70765.1| actin [Populus tomentosa] gi|301331603|gb|ADK70766.1| actin [Populus tomentosa] gi|301331606|gb|ADK70767.1| actin [Populus tomentosa] gi|301331609|gb|ADK70768.1| actin [Populus tomentosa] gi|301331611|gb|ADK70769.1| actin [Populus tomentosa] gi|301331613|gb|ADK70770.1| actin [Populus tomentosa] gi|301331615|gb|ADK70771.1| actin [Populus tomentosa] gi|301331617|gb|ADK70772.1| actin [Populus tomentosa] gi|301331619|gb|ADK70773.1| actin [Populus tomentosa] gi|301331622|gb|ADK70774.1| actin [Populus tomentosa] gi|301331625|gb|ADK70775.1| actin [Populus tomentosa] gi|301331628|gb|ADK70776.1| actin [Populus tomentosa] gi|301331631|gb|ADK70777.1| actin [Populus tomentosa] gi|301331634|gb|ADK70778.1| actin [Populus tomentosa] gi|301331637|gb|ADK70779.1| actin [Populus tomentosa] gi|301331640|gb|ADK70780.1| actin [Populus tomentosa] gi|301331643|gb|ADK70781.1| actin [Populus tomentosa] gi|429326368|gb|AFZ78524.1| actin [Populus tomentosa]

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/377 (98%), Positives = 376/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MA++EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MAESEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAK SS+VEK
Sbjct: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPSMIGME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KAEYDESGPSIVHRKCF 377
           KAEYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481291|gb|ABK92589.1| unknown [Populus trichocarpa]

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/377 (98%), Positives = 376/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTD+LMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELET+K SSAVEK
Sbjct: 181 DLAGRDLTDSLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPSMIGME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           LSGGSTMFPGIADRMSKEI+ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KAEYDESGPSIVHRKCF 377
           KAEYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806047|ref|NP_001241178.1| uncharacterized protein LOC100807341 [Glycine max] gi|255635153|gb|ACU17933.1| unknown [Glycine max]

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/377 (98%), Positives = 375/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTDALMKILTERGY+FTT+AEREIVRDMKEKLAYIALDYEQELETAK SSAVEK
Sbjct: 181 DLAGRDLTDALMKILTERGYTFTTSAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPSMIGMES GIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESPGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KAEYDESGPSIVHRKCF 377
           KAEYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500435|ref|XP_003519037.1| PREDICTED: actin-like [Glycine max]

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/377 (98%), Positives = 374/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTDALMKILTERGYSFTTTAEREIVRD+KEKLAYIALDYEQE+ETAK SSAVEK
Sbjct: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQEVETAKTSSAVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPSMIGMES GIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESPGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KAEYDESGPSIVHRKCF 377
           KAEYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579745|ref|XP_002530711.1| actin, putative [Ricinus communis] gi|223529725|gb|EEF31665.1| actin, putative [Ricinus communis]

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/377 (98%), Positives = 375/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKL+YIALDYEQELETAK SS+VEK
Sbjct: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETAKTSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPSMIGME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KAEYDESGPSIVHRKCF 377
           KAEYDESGPSIVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	377
TAIR|locus:2040656	377	ACT1 "AT2G37620" [Arabidopsis	1.0	1.0	0.968	1.1e-197
TAIR|locus:2084410	377	ACT3 "AT3G53750" [Arabidopsis	1.0	1.0	0.968	1.1e-197
TAIR|locus:2099302	377	ACT11 "AT3G12110" [Arabidopsis	1.0	1.0	0.962	1.6e-196
TAIR|locus:2075160	377	ACT12 "AT3G46520" [Arabidopsis	1.0	1.0	0.968	1.6e-196
TAIR|locus:2178128	377	ACT7 "actin 7" [Arabidopsis th	1.0	1.0	0.960	4.3e-196
TAIR|locus:2148298	377	ACT4 "actin 4" [Arabidopsis th	1.0	1.0	0.965	4.3e-196
TAIR|locus:2028416	377	ACT8 "AT1G49240" [Arabidopsis	1.0	1.0	0.915	2.3e-190
TAIR|locus:2093954	377	ACT2 "AT3G18780" [Arabidopsis	1.0	1.0	0.912	6e-190
DICTYBASE|DDB_G0289663	376	act5 "actin" [Dictyostelium di	0.994	0.997	0.912	7.9e-188
DICTYBASE|DDB_G0289553	376	act1 "actin" [Dictyostelium di	0.994	0.997	0.912	7.9e-188

TAIR|locus:2040656 ACT1 "AT2G37620" [Arabidopsis thaliana (taxid:3702)]

 Score = 1914 (678.8 bits), Expect = 1.1e-197, P = 1.1e-197
 Identities = 365/377 (96%), Positives = 373/377 (98%)

Query:     1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
             MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct:     1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query:    61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
             QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREK
Sbjct:    61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREK 120

Query:   121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
             MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct:   121 MTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query:   181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
             DLAGRDLTDALMKILTERGYSFTTTAEREIVRD+KEKL YIALDYEQELETAK SS+VEK
Sbjct:   181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDIKEKLCYIALDYEQELETAKTSSSVEK 240

Query:   241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
             +YELPDGQVITIG+ERFRCPEVL+QPSMIGME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct:   241 NYELPDGQVITIGSERFRCPEVLYQPSMIGMENAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query:   301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
             LSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct:   301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query:   361 KAEYDESGPSIVHRKCF 377
             KAEYDESGPSIVHRKCF
Sbjct:   361 KAEYDESGPSIVHRKCF 377

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=TAS

GO:0007010 "cytoskeleton organization" evidence=TAS

GO:0048589 "developmental growth" evidence=IMP

GO:0048767 "root hair elongation" evidence=IMP

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2084410 ACT3 "AT3G53750" [Arabidopsis thaliana (taxid:3702)]

 Score = 1914 (678.8 bits), Expect = 1.1e-197, P = 1.1e-197
 Identities = 365/377 (96%), Positives = 373/377 (98%)

Query:     1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
             MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct:     1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query:    61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
             QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREK
Sbjct:    61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREK 120

Query:   121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
             MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct:   121 MTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query:   181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
             DLAGRDLTDALMKILTERGYSFTTTAEREIVRD+KEKL YIALDYEQELETAK SS+VEK
Sbjct:   181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDIKEKLCYIALDYEQELETAKTSSSVEK 240

Query:   241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
             +YELPDGQVITIG+ERFRCPEVL+QPSMIGME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct:   241 NYELPDGQVITIGSERFRCPEVLYQPSMIGMENAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query:   301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
             LSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct:   301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query:   361 KAEYDESGPSIVHRKCF 377
             KAEYDESGPSIVHRKCF
Sbjct:   361 KAEYDESGPSIVHRKCF 377

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=TAS

GO:0007010 "cytoskeleton organization" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

TAIR|locus:2099302 ACT11 "AT3G12110" [Arabidopsis thaliana (taxid:3702)]

 Score = 1903 (674.9 bits), Expect = 1.6e-196, P = 1.6e-196
 Identities = 363/377 (96%), Positives = 372/377 (98%)

Query:     1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
             MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct:     1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query:    61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
             QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct:    61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query:   121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
             MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct:   121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query:   181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
             DLAGRDLTD LMKILTERGYSFTT+AEREIVRD+KEKLAYIALDYEQE+ETA  SS+VEK
Sbjct:   181 DLAGRDLTDYLMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQEMETANTSSSVEK 240

Query:   241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
             SYELPDGQVITIG ERFRCPEVLFQPS++GME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct:   241 SYELPDGQVITIGGERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query:   301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
             LSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct:   301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query:   361 KAEYDESGPSIVHRKCF 377
             KAEYDESGPSIVHRKCF
Sbjct:   361 KAEYDESGPSIVHRKCF 377

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0030036 "actin cytoskeleton organization" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0005856 "cytoskeleton" evidence=ISS

TAIR|locus:2075160 ACT12 "AT3G46520" [Arabidopsis thaliana (taxid:3702)]

 Score = 1903 (674.9 bits), Expect = 1.6e-196, P = 1.6e-196
 Identities = 365/377 (96%), Positives = 371/377 (98%)

Query:     1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
             MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct:     1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query:    61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
             QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct:    61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query:   121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
             MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct:   121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query:   181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
             DLAGRDLTD LMKILTERGYSFTTTAEREIVRDMKEKL+YIALDYEQELET+K SS+VEK
Sbjct:   181 DLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEK 240

Query:   241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
             S+ELPDGQVITIGAERFRCPEVLFQPSMIGME+ GIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct:   241 SFELPDGQVITIGAERFRCPEVLFQPSMIGMENPGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query:   301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
             LSGG+TMF GI DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct:   301 LSGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query:   361 KAEYDESGPSIVHRKCF 377
             KAEYDESGPSIVHRKCF
Sbjct:   361 KAEYDESGPSIVHRKCF 377

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=TAS

GO:0007010 "cytoskeleton organization" evidence=RCA;TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TAIR|locus:2178128 ACT7 "actin 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1899 (673.5 bits), Expect = 4.3e-196, P = 4.3e-196
 Identities = 362/377 (96%), Positives = 372/377 (98%)

Query:     1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
             MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct:     1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query:    61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
             QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct:    61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query:   121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
             MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct:   121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query:   181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
             DLAGRDLTD+LMKILTERGY FTTTAEREIVRD+KEKLAY+ALDYEQELETAK SS+VEK
Sbjct:   181 DLAGRDLTDSLMKILTERGYMFTTTAEREIVRDIKEKLAYVALDYEQELETAKSSSSVEK 240

Query:   241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
             +YELPDGQVITIGAERFRCPEVLFQPS+IGME+ GIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct:   241 NYELPDGQVITIGAERFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query:   301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
             LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+
Sbjct:   301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360

Query:   361 KAEYDESGPSIVHRKCF 377
             K+EYDESGPSIVHRKCF
Sbjct:   361 KSEYDESGPSIVHRKCF 377

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007010 "cytoskeleton organization" evidence=RCA;TAS

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009845 "seed germination" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0010053 "root epidermal cell differentiation" evidence=IMP

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0051301 "cell division" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005856 "cytoskeleton" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2148298 ACT4 "actin 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1899 (673.5 bits), Expect = 4.3e-196, P = 4.3e-196
 Identities = 364/377 (96%), Positives = 371/377 (98%)

Query:     1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
             MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct:     1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query:    61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
             QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct:    61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query:   121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
             MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct:   121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query:   181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
             DLAGRDLTD LMKILTERGYSFTTTAEREIVRDMKEKL+YIALD+EQELET+K SS+VEK
Sbjct:   181 DLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDFEQELETSKTSSSVEK 240

Query:   241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
             S+ELPDGQVITIGAERFRCPEVLFQPSMIGME+ GIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct:   241 SFELPDGQVITIGAERFRCPEVLFQPSMIGMENPGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query:   301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
             LSGG+TMF GI DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA
Sbjct:   301 LSGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query:   361 KAEYDESGPSIVHRKCF 377
             KAEYDESGPSIVHRKCF
Sbjct:   361 KAEYDESGPSIVHRKCF 377

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0030036 "actin cytoskeleton organization" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

TAIR|locus:2028416 ACT8 "AT1G49240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1845 (654.5 bits), Expect = 2.3e-190, P = 2.3e-190
 Identities = 345/377 (91%), Positives = 369/377 (97%)

Query:     1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
             MADA+DIQP+VCDNGTGMVKAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKDAYVGDEA
Sbjct:     1 MADADDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEA 60

Query:    61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
             QSKRGILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKANREK
Sbjct:    61 QSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREK 120

Query:   121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
             MTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG++LPHAILRL
Sbjct:   121 MTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRL 180

Query:   181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
             DLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKL+++A+DYEQE+ET+K SS++EK
Sbjct:   181 DLAGRDLTDYLMKILTERGYMFTTTAEREIVRDIKEKLSFVAVDYEQEMETSKTSSSIEK 240

Query:   241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
             +YELPDGQVITIGAERFRCPEVLFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct:   241 NYELPDGQVITIGAERFRCPEVLFQPSFVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query:   301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
             LSGG+TMF GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+
Sbjct:   301 LSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360

Query:   361 KAEYDESGPSIVHRKCF 377
             KAEYDE+GP IVHRKCF
Sbjct:   361 KAEYDEAGPGIVHRKCF 377

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0048768 "root hair cell tip growth" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2093954 ACT2 "AT3G18780" [Arabidopsis thaliana (taxid:3702)]

 Score = 1841 (653.1 bits), Expect = 6.0e-190, P = 6.0e-190
 Identities = 344/377 (91%), Positives = 369/377 (97%)

Query:     1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
             MA+A+DIQP+VCDNGTGMVKAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKDAYVGDEA
Sbjct:     1 MAEADDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEA 60

Query:    61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
             QSKRGILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKANREK
Sbjct:    61 QSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREK 120

Query:   121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
             MTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG++LPHAILRL
Sbjct:   121 MTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRL 180

Query:   181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
             DLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKL+++A+DYEQE+ET+K SS++EK
Sbjct:   181 DLAGRDLTDYLMKILTERGYMFTTTAEREIVRDIKEKLSFVAVDYEQEMETSKTSSSIEK 240

Query:   241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
             +YELPDGQVITIGAERFRCPEVLFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct:   241 NYELPDGQVITIGAERFRCPEVLFQPSFVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query:   301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
             LSGG+TMF GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+
Sbjct:   301 LSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360

Query:   361 KAEYDESGPSIVHRKCF 377
             KAEYDE+GP IVHRKCF
Sbjct:   361 KAEYDEAGPGIVHRKCF 377

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS;TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009644 "response to high light intensity" evidence=IEP

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0010053 "root epidermal cell differentiation" evidence=IMP

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0010114 "response to red light" evidence=IEP

GO:0010218 "response to far red light" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0048768 "root hair cell tip growth" evidence=IMP

GO:0005829 "cytosol" evidence=RCA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010193 "response to ozone" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016051 "carbohydrate biosynthetic process" evidence=RCA

GO:0030243 "cellulose metabolic process" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

DICTYBASE|DDB_G0289663 act5 "actin" [Dictyostelium discoideum (taxid:44689)]

 Score = 1821 (646.1 bits), Expect = 7.9e-188, P = 7.9e-188
 Identities = 342/375 (91%), Positives = 362/375 (96%)

Query:     3 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
             D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQS
Sbjct:     2 DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 61

Query:    63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
             KRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct:    62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121

Query:   123 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
             QIMFETFNTPAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDL
Sbjct:   122 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 181

Query:   183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSY 242
             AGRDLTD +MKILTERGYSFTTTAEREIVRD+KEKLAY+ALD+E E++TA  SSA+EKSY
Sbjct:   182 AGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSY 241

Query:   243 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
             ELPDGQVITIG ERFRCPE LFQPS +GMESAGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct:   242 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 301

Query:   303 GGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
             GG+TMFPGIADRM+KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K 
Sbjct:   302 GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 361

Query:   363 EYDESGPSIVHRKCF 377
             EYDESGPSIVHRKCF
Sbjct:   362 EYDESGPSIVHRKCF 376

GO:0006909 "phagocytosis" evidence=IEP

GO:0001891 "phagocytic cup" evidence=IDA

GO:0032010 "phagolysosome" evidence=IDA

GO:0032009 "early phagosome" evidence=IDA

GO:0006972 "hyperosmotic response" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042331 "phototaxis" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0006935 "chemotaxis" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0006897 "endocytosis" evidence=TAS

GO:0000910 "cytokinesis" evidence=TAS

GO:0000902 "cell morphogenesis" evidence=TAS

GO:0031252 "cell leading edge" evidence=TAS

GO:0031143 "pseudopodium" evidence=TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017022 "myosin binding" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0005884 "actin filament" evidence=IDA

GO:0005200 "structural constituent of cytoskeleton" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0289553 act1 "actin" [Dictyostelium discoideum (taxid:44689)]

 Score = 1821 (646.1 bits), Expect = 7.9e-188, P = 7.9e-188
 Identities = 342/375 (91%), Positives = 362/375 (96%)

Query:     3 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
             D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQS
Sbjct:     2 DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 61

Query:    63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
             KRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct:    62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121

Query:   123 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
             QIMFETFNTPAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDL
Sbjct:   122 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 181

Query:   183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSY 242
             AGRDLTD +MKILTERGYSFTTTAEREIVRD+KEKLAY+ALD+E E++TA  SSA+EKSY
Sbjct:   182 AGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSY 241

Query:   243 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
             ELPDGQVITIG ERFRCPE LFQPS +GMESAGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct:   242 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 301

Query:   303 GGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
             GG+TMFPGIADRM+KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K 
Sbjct:   302 GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 361

Query:   363 EYDESGPSIVHRKCF 377
             EYDESGPSIVHRKCF
Sbjct:   362 EYDESGPSIVHRKCF 376

GO:0006909 "phagocytosis" evidence=IEP

GO:0001891 "phagocytic cup" evidence=IDA

GO:0032010 "phagolysosome" evidence=IDA

GO:0032009 "early phagosome" evidence=IDA

GO:0006972 "hyperosmotic response" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0006897 "endocytosis" evidence=TAS

GO:0000910 "cytokinesis" evidence=TAS

GO:0000902 "cell morphogenesis" evidence=TAS

GO:0042331 "phototaxis" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0006935 "chemotaxis" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0031252 "cell leading edge" evidence=TAS

GO:0031143 "pseudopodium" evidence=TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005884 "actin filament" evidence=IDA

GO:0005200 "structural constituent of cytoskeleton" evidence=IDA

GO:0017022 "myosin binding" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P02582	ACT1_MAIZE	No assigned EC number	0.8992	0.9946	1.0	N/A	no
Q93131	ACTC_BRAFL	No assigned EC number	0.8981	0.9893	0.9946	yes	no
P02580	ACT3_SOYBN	No assigned EC number	0.9230	0.9973	1.0	no	no
P0CJ47	ACT3_ARATH	No assigned EC number	0.9681	1.0	1.0	yes	no
P0CJ46	ACT1_ARATH	No assigned EC number	0.9681	1.0	1.0	yes	no
P17126	ACT_HYDVU	No assigned EC number	0.8992	0.9973	1.0	N/A	no
A3C6D7	ACT2_ORYSJ	No assigned EC number	0.9522	1.0	1.0	no	no
Q964E2	ACTC_BIOPF	No assigned EC number	0.9034	0.9893	0.9920	N/A	no
P07829	ACT3_DICDI	No assigned EC number	0.896	0.9946	0.9973	yes	no
Q964E1	ACTC_BIOOB	No assigned EC number	0.9034	0.9893	0.9920	N/A	no
P53461	ACTC_HALRO	No assigned EC number	0.9034	0.9893	0.9920	N/A	no
P30168	ACT6_SOLTU	No assigned EC number	0.9416	1.0	1.0	N/A	no
O81221	ACT_GOSHI	No assigned EC number	0.9761	1.0	1.0	N/A	no
P30167	ACT3_SOLTU	No assigned EC number	0.9602	1.0	1.0	N/A	no
P30164	ACT1_PEA	No assigned EC number	0.9549	0.9973	1.0	N/A	no
P30165	ACT2_PEA	No assigned EC number	0.9496	0.9973	1.0	N/A	no
P41113	ACT3_PODCA	No assigned EC number	0.8938	0.9973	1.0	N/A	no
P46258	ACT3_PEA	No assigned EC number	0.9708	1.0	1.0	N/A	no
Q05214	ACT1_TOBAC	No assigned EC number	0.9681	1.0	1.0	N/A	no
P02578	ACT1_ACACA	No assigned EC number	0.9064	0.9920	0.9973	N/A	no
P23343	ACT1_DAUCA	No assigned EC number	0.9312	0.9973	0.9894	N/A	no
P12716	ACTC_PISOC	No assigned EC number	0.9061	0.9893	0.9920	N/A	no
P0C539	ACT2_ORYSI	No assigned EC number	0.9522	1.0	1.0	N/A	no
P53504	ACT1_SORBI	No assigned EC number	0.9549	1.0	1.0	N/A	no
Q10DV7	ACT1_ORYSJ	No assigned EC number	0.9734	1.0	1.0	yes	no
O65316	ACT_MESVI	No assigned EC number	0.9177	1.0	1.0	N/A	no
P30172	ACT12_SOLTU	No assigned EC number	0.9607	0.9469	1.0	N/A	no
Q553U6	ACT22_DICDI	No assigned EC number	0.9066	0.9946	0.9973	yes	no
Q96293	ACT8_ARATH	No assigned EC number	0.9151	1.0	1.0	no	no
Q96292	ACT2_ARATH	No assigned EC number	0.9124	1.0	1.0	no	no
Q964E3	ACTC_BIOAL	No assigned EC number	0.8981	0.9893	0.9920	N/A	no
O65315	ACT_COLSC	No assigned EC number	0.9230	1.0	1.0	N/A	no
P20904	ACT_VOLCA	No assigned EC number	0.8938	1.0	1.0	N/A	no
P53471	ACT2_SCHMA	No assigned EC number	0.8992	0.9973	1.0	N/A	no
P53498	ACT_CHLRE	No assigned EC number	0.9018	1.0	1.0	N/A	no
P53494	ACT4_ARATH	No assigned EC number	0.9655	1.0	1.0	yes	no
P53497	ACT12_ARATH	No assigned EC number	0.9681	1.0	1.0	yes	no
P53496	ACT11_ARATH	No assigned EC number	0.9628	1.0	1.0	yes	no
P30171	ACT11_SOLTU	No assigned EC number	0.9708	1.0	1.0	N/A	no
P30173	ACT13_SOLTU	No assigned EC number	0.9602	1.0	1.0	N/A	no
P53492	ACT7_ARATH	No assigned EC number	0.9602	1.0	1.0	yes	no
Q54GX7	ACT10_DICDI	No assigned EC number	0.9093	0.9946	0.9973	yes	no
Q10AZ4	ACT3_ORYSJ	No assigned EC number	0.9628	1.0	1.0	yes	no
A2XNS1	ACT3_ORYSI	No assigned EC number	0.9628	1.0	1.0	N/A	no
P0C542	ACT7_ORYSI	No assigned EC number	0.9383	0.9893	0.9920	N/A	no
P0C540	ACT7_ORYSJ	No assigned EC number	0.9383	0.9893	0.9920	no	no
A2XLF2	ACT1_ORYSI	No assigned EC number	0.9734	1.0	1.0	N/A	no
P07830	ACT1_DICDI	No assigned EC number	0.912	0.9946	0.9973	yes	no
P02576	ACTA_PHYPO	No assigned EC number	0.9146	0.9946	0.9973	N/A	no
Q964E0	ACTC_BIOTE	No assigned EC number	0.9008	0.9893	0.9920	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	377
PTZ00281	376	PTZ00281, PTZ00281, actin; Provisional	0.0
PTZ00004	378	PTZ00004, PTZ00004, actin-2; Provisional	0.0
pfam00022	367	pfam00022, Actin, Actin	0.0
smart00268	373	smart00268, ACTIN, Actin	0.0
PTZ00466	380	PTZ00466, PTZ00466, actin-like protein; Provisiona	1e-170
PTZ00452	375	PTZ00452, PTZ00452, actin; Provisional	1e-169
COG5277	444	COG5277, COG5277, Actin and related proteins [Cyto	1e-157
PTZ00280	414	PTZ00280, PTZ00280, Actin-related protein 3; Provi	1e-114
cd00012	185	cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-	1e-16

>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional

 Score =  729 bits (1884), Expect = 0.0
 Identities = 341/373 (91%), Positives = 361/373 (96%)

Query: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
           ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQSKR
Sbjct: 4   EDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKR 63

Query: 65  GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
           GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 64  GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123

Query: 125 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           MFETFNTPAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDLAG
Sbjct: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG 183

Query: 185 RDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYEL 244
           RDLTD +MKILTERGYSFTTTAEREIVRD+KEKLAY+ALD+E E++TA  SSA+EKSYEL
Sbjct: 184 RDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYEL 243

Query: 245 PDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
           PDGQVITIG ERFRCPE LFQPS +GMESAGIHETTYNSIMKCDVDIRKDLYGN+VLSGG
Sbjct: 244 PDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGG 303

Query: 305 STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEY 364
           +TMFPGIADRM+KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EY
Sbjct: 304 TTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEY 363

Query: 365 DESGPSIVHRKCF 377
           DESGPSIVHRKCF
Sbjct: 364 DESGPSIVHRKCF 376

Length = 376

>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional

 Score =  673 bits (1738), Expect = 0.0
 Identities = 301/379 (79%), Positives = 337/379 (88%), Gaps = 3/379 (0%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           M+  E+    V DNG+GMVKAGFAGDDAPR VFPSIVGRP++ G+MVGM +KD YVGDEA
Sbjct: 1   MSV-EETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEA 59

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           Q KRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 60  QDKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFET N PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGY+LPHAI RL
Sbjct: 120 MTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRL 179

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEL-ETAKISSAVE 239
           D+AGRDLT+ +MKIL ERG +FTTTAE+EIVRD+KEKL YIALD+++E+  +A  S   E
Sbjct: 180 DVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYE 239

Query: 240 KSYELPDGQVITIGAERFRCPEVLFQPSMIGMESA-GIHETTYNSIMKCDVDIRKDLYGN 298
           +SYELPDG +IT+G+ERFRCPE LFQPS+IG E   GIHE T+ SI KCD+DIRKDLYGN
Sbjct: 240 ESYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGN 299

Query: 299 IVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMW 358
           IVLSGG+TM+ G+ +R++KE+T LAPS+MKIKVVAPPERKYSVWIGGSIL+SL TFQQMW
Sbjct: 300 IVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMW 359

Query: 359 IAKAEYDESGPSIVHRKCF 377
           + K EYDESGPSIVHRKCF
Sbjct: 360 VTKEEYDESGPSIVHRKCF 378

Length = 378

>gnl|CDD|200935 pfam00022, Actin, Actin

 Score =  647 bits (1671), Expect = 0.0
 Identities = 238/374 (63%), Positives = 283/374 (75%), Gaps = 8/374 (2%)

Query: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
           +++  LV DNG+G  KAGFAG+DAPRAV PS+VGRPR  GVMV       YVGDEA SKR
Sbjct: 1   DEVSALVIDNGSGTTKAGFAGEDAPRAVIPSVVGRPRGRGVMV-----KYYVGDEALSKR 55

Query: 65  GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
             L ++YPIE GIV NWD MEKIW HTF+ ELRV PEEHP+LLTE PLNP ANREK T+I
Sbjct: 56  PGLEVRYPIEDGIVENWDAMEKIWEHTFFEELRVDPEEHPLLLTEPPLNPPANREKATEI 115

Query: 125 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           MFETF  PA+Y+A QAVLS YASGRTTG+V+DSG GV+  VP+YEGY L  AI R DLAG
Sbjct: 116 MFETFGVPALYLAKQAVLSAYASGRTTGLVVDSGAGVTSVVPVYEGYVLQKAIRRSDLAG 175

Query: 185 RDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYEL 244
            DLTD L K+L+ R YSF T AE E+VRD+KE L Y++ D   +   +  SS    SYEL
Sbjct: 176 DDLTDYLRKLLSSRTYSFNTYAEEEVVRDIKESLCYVSDDPFGDTAAS--SSPPTVSYEL 233

Query: 245 PDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
           PDG VI +G ERFR PE+LF PS+IG ESAGI E  Y+SI  CDVD+R  L  NIV++GG
Sbjct: 234 PDGYVIILGNERFRVPEILFNPSLIGSESAGIPELIYDSINACDVDLRPSLLANIVVTGG 293

Query: 305 STMFPGIADRMSKEITALAPSSMKIKVVAPP-ERKYSVWIGGSILASLSTFQQMWIAKAE 363
           +T+FPG  +R+ KE+  LAPS +K+K++APP ERKYS WIGGSILASL TFQQMW++K E
Sbjct: 294 TTLFPGFTERLEKELAQLAPSGVKVKIIAPPNERKYSAWIGGSILASLGTFQQMWVSKQE 353

Query: 364 YDESGPSIVHRKCF 377
           Y+E G S+V RKCF
Sbjct: 354 YEEHGSSVVERKCF 367

Length = 367

>gnl|CDD|214592 smart00268, ACTIN, Actin

 Score =  627 bits (1620), Expect = 0.0
 Identities = 250/373 (67%), Positives = 304/373 (81%), Gaps = 4/373 (1%)

Query: 8   QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGIL 67
             +V DNG+G +KAGFAG+D P+ VFPSIVGRP+    MVG   KD +VGDEAQ KRG L
Sbjct: 2   PAIVIDNGSGTIKAGFAGEDFPQVVFPSIVGRPKDGKGMVG-DAKDIFVGDEAQEKRGGL 60

Query: 68  TLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 127
            LKYPIE+GIV NWDDMEKIW +TF+NELRV PEEHPVLLTE P+NPK+NREK+ +IMFE
Sbjct: 61  ELKYPIENGIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFE 120

Query: 128 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 187
           TFN PA+Y+AIQAVLSLYASGRTTG+V+DSGDGV+H VP+ +GY LPHAI R+D+AGRD+
Sbjct: 121 TFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDI 180

Query: 188 TDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETA---KISSAVEKSYEL 244
           TD L ++L+ERGY F ++AE EIVR++KEKL Y+A D+E+E++ A     SS +EK+YEL
Sbjct: 181 TDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKLARESSESSKLEKTYEL 240

Query: 245 PDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
           PDG  I +G ERFR PE+LF P +IG+E  GIHE  Y SI KCD+D+RKDLY NIVLSGG
Sbjct: 241 PDGNTIKVGNERFRIPEILFSPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGG 300

Query: 305 STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEY 364
           ST+ PG  +R+ KE+  LAP  +K+KV+APPERKYSVW+GGSILASLSTF+ MWI K EY
Sbjct: 301 STLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEY 360

Query: 365 DESGPSIVHRKCF 377
           +ESG  IV RKCF
Sbjct: 361 EESGSQIVERKCF 373

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily. Length = 373

>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional

 Score =  480 bits (1238), Expect = e-170
 Identities = 194/370 (52%), Positives = 270/370 (72%), Gaps = 2/370 (0%)

Query: 8   QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGIL 67
           QP++ DNGTG +KAGFAG+D P  VFPS VGRP++  VM G  + + +VG++A+  RG+L
Sbjct: 13  QPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLL 72

Query: 68  TLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 127
            + YPI HGI+ NW+DME IW H  YN +++  EEHPVLLTEAPLNP+ N+EK+ ++ FE
Sbjct: 73  KVTYPINHGIIENWNDMENIWIHV-YNSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFE 131

Query: 128 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 187
           TFN PA++++IQA+LSLY+ G+T G VLD GDGV H V IYEGY++ + I R D+AGRD+
Sbjct: 132 TFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDI 191

Query: 188 TDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDG 247
           T  L  +L + G+ F T+AE E+V++MKE   Y++ +  +E  +++  +     Y LPDG
Sbjct: 192 TTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSE-KALTTLPYILPDG 250

Query: 248 QVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTM 307
             I IG+ER+R PEVLF PS++G+E  G+ E    SI + D+D+R+ LY +IVLSGG+TM
Sbjct: 251 SQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTM 310

Query: 308 FPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDES 367
           F G  DR+  EI   AP  + I++ APPERK+S +IGGSILASL+TF+++WI+K E+DE 
Sbjct: 311 FHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEY 370

Query: 368 GPSIVHRKCF 377
           G  I+HRK F
Sbjct: 371 GSVILHRKTF 380

Length = 380

>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional

 Score =  476 bits (1226), Expect = e-169
 Identities = 210/368 (57%), Positives = 285/368 (77%)

Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           +V DNG+G  K G AGDDAP + FP+IVGR +    +     K+ YVG+EAQ+KRG+L +
Sbjct: 8   VVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAI 67

Query: 70  KYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           K PI++GI+N+WDD+E IWHH FYNEL ++PE+ PV +T+AP+N K NRE+MTQIMFETF
Sbjct: 68  KEPIQNGIINSWDDIEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETF 127

Query: 130 NTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           NTP +Y++ +AVLSLY SG+T G+V+DSG+GV+H VP++EG+ +P AI +++LAGR  TD
Sbjct: 128 NTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTD 187

Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQV 249
            L +IL E GYS T   +R IV+++KE+L Y ALD + E    K S++ +  Y+LPDG +
Sbjct: 188 YLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPDGNI 247

Query: 250 ITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           +TI +++FRC E+LFQP +IG+E AGIH   Y+SI KCD+D+R++L  NIVLSGG+T+FP
Sbjct: 248 LTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFP 307

Query: 310 GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 369
           GIA+R+S E+T L PS +KI+V APP+R++S WIGGSI  +LST Q  WI + EYDE GP
Sbjct: 308 GIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGP 367

Query: 370 SIVHRKCF 377
           SIVHRKCF
Sbjct: 368 SIVHRKCF 375

Length = 375

>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton]

 Score =  448 bits (1154), Expect = e-157
 Identities = 206/443 (46%), Positives = 276/443 (62%), Gaps = 69/443 (15%)

Query: 4   AEDIQP-LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR-HTGVMVGMGQKDAYVGDEAQ 61
             D  P +V DNG+G  KAGFAG+D P  VFPSIVGR R    VM    +KD YVG+EAQ
Sbjct: 2   TGDNVPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQ 61

Query: 62  SKRGI--LTLKYPIEHGIVNNWDDMEKIWHHTFYNE--LRVAPEEHPVLLTEAPLNPKAN 117
           + R    L L+YPIE+GI+ NWD ME+IW +TF+N+  L  +PEEHP+LLTE PLNP +N
Sbjct: 62  NDRDNSLLELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSN 121

Query: 118 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--TGIVLDSGDGVSHTVPIYEGYALPH 175
           REK+T+++FET N PA+Y+AIQAVLSLYASG +  TG+V+DSGD V+H +P+ +G  LP 
Sbjct: 122 REKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPK 181

Query: 176 AILRLDLAGRDLTDALMKILTE-----RGYSFTTT---AEREIVRDMKEKL-------AY 220
           A+ R+D+ GRD+TD L K+L E     RGY+  +       EIV ++KE++       AY
Sbjct: 182 AVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAY 241

Query: 221 IALDYEQELETAK----------------ISSAVEKSYELPDGQVITIGAE-RFRCPEVL 263
           ++LD E+E E  +                 +S  ++S ELPDG+ I  G E RF+ PE+L
Sbjct: 242 VSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEIL 301

Query: 264 FQP-----------------------------SMIGMESAGIHETTYNSIMKCDVDIRKD 294
           F+P                             + +G + AG+ E  Y SI  CD D+RK 
Sbjct: 302 FKPELPISGLEEAGKIDESKQELVAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKS 361

Query: 295 LYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTF 354
           LY NIVL+GG++  PG A+R+ KE+T+LAPS  K+ V+ PP+     W+G SILASL TF
Sbjct: 362 LYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILASLETF 421

Query: 355 QQMWIAKAEYDESGPSIVHRKCF 377
           QQ+WI K EY+E GP I+  K F
Sbjct: 422 QQLWITKEEYEEHGPDILQEKRF 444

Length = 444

>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional

 Score =  339 bits (870), Expect = e-114
 Identities = 154/407 (37%), Positives = 219/407 (53%), Gaps = 48/407 (11%)

Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMV---GMGQKDAYVGDEAQSKRGI 66
           +V DNGTG  K G+AG+  P  + P+++             G    D Y+GDEA +    
Sbjct: 7   VVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKS 66

Query: 67  LTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 126
            TL YP++HGIV +WD MEK W    +  LR  PEEH  +LTE P+NP  NRE   +IMF
Sbjct: 67  YTLTYPMKHGIVEDWDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMF 126

Query: 127 ETFNTPAMYVAIQAVLSLYAS----------GRTTGIVLDSGDGVSHTVPIYEGYALPHA 176
           ETFN   +Y+A+QAVL+L AS          G  TG V+DSGDGV+H +P+ +GY +  +
Sbjct: 127 ETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSS 186

Query: 177 ILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELET----- 231
           I  + LAGRD+T+ + ++L ERG          + + +KEK  Y+A D  +E E      
Sbjct: 187 IKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYDSDP 246

Query: 232 -------AKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNS 283
                    ++S  +K Y       + +G ERF  PE+ F P +   E +  + E   ++
Sbjct: 247 KNHFKKYTAVNSVTKKPYT------VDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDA 300

Query: 284 IMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITA----------------LAPSSM 327
           I  C +D R+ LY NIVLSGGSTMF G   R+ +++                  L P  +
Sbjct: 301 IQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPI 360

Query: 328 KIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHR 374
            + VV+ P ++Y+VW GGS+LAS   F+++   KAEYDE GPSI   
Sbjct: 361 DVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPSICRY 407

Length = 414

>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

 Score = 76.9 bits (189), Expect = 1e-16
 Identities = 44/192 (22%), Positives = 61/192 (31%), Gaps = 53/192 (27%)

Query: 10  LVCDNGTGMVKAGFAGDDA---PRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI 66
           L  D G+   KAG A  D    P  + P+ VGRP                          
Sbjct: 1   LGIDIGSTSTKAGVADLDGEILPEEIVPTPVGRP-------------------------- 34

Query: 67  LTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEE-HPVLLTEAPLNPKANREKMTQI- 124
                    G V + D++E+         LR    E   V +TE    PK NRE +    
Sbjct: 35  ---------GAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPN 85

Query: 125 --------MFETFNTPAMYVAIQAVLSLYASGRT-----TGIVLDSGDGVSHTVPIYEGY 171
                     E      + V   AV +  A G       T +V+D G G +    + +G 
Sbjct: 86  LLLIPLALALEDLGGVPVAVVNDAVAAALAEGLFGKEEDTVLVVDLGTGTTGIAIVEDGK 145

Query: 172 ALPHAILRLDLA 183
               A   L +A
Sbjct: 146 GGVGAAGELGIA 157

This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	377
PTZ00452	375	actin; Provisional	100.0
PTZ00281	376	actin; Provisional	100.0
PTZ00466	380	actin-like protein; Provisional	100.0
KOG0676	372	consensus Actin and related proteins [Cytoskeleton	100.0
PTZ00004	378	actin-2; Provisional	100.0
PTZ00280	414	Actin-related protein 3; Provisional	100.0
PF00022	393	Actin: Actin; InterPro: IPR004000 Actin [, ] is a	100.0
smart00268	373	ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki	100.0
KOG0679	426	consensus Actin-related protein - Arp4p/Act3p [Cyt	100.0
cd00012	371	ACTIN Actin; An ubiquitous protein involved in the	100.0
KOG0677	389	consensus Actin-related protein Arp2/3 complex, su	100.0
COG5277	444	Actin and related proteins [Cytoskeleton]	100.0
KOG0680	400	consensus Actin-related protein - Arp6p [Cytoskele	100.0
KOG0681	645	consensus Actin-related protein - Arp5p [Cytoskele	100.0
KOG0678	415	consensus Actin-related protein Arp2/3 complex, su	100.0
KOG0797	618	consensus Actin-related protein [Cytoskeleton]	100.0
PRK13930	335	rod shape-determining protein MreB; Provisional	100.0
PRK13927	334	rod shape-determining protein MreB; Provisional	100.0
TIGR00904	333	mreB cell shape determining protein, MreB/Mrl fami	100.0
PRK13929	335	rod-share determining protein MreBH; Provisional	100.0
PF06723	326	MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba	100.0
PRK13928	336	rod shape-determining protein Mbl; Provisional	99.98
COG1077	342	MreB Actin-like ATPase involved in cell morphogene	99.94
TIGR02529	239	EutJ ethanolamine utilization protein EutJ family	99.88
PRK15080	267	ethanolamine utilization protein EutJ; Provisional	99.85
CHL00094	621	dnaK heat shock protein 70	99.81
PTZ00400	663	DnaK-type molecular chaperone; Provisional	99.81
TIGR01991	599	HscA Fe-S protein assembly chaperone HscA. The Hea	99.8
PLN03184	673	chloroplast Hsp70; Provisional	99.79
TIGR02350	595	prok_dnaK chaperone protein DnaK. Members of this	99.79
PRK00290	627	dnaK molecular chaperone DnaK; Provisional	99.79
PRK01433	595	hscA chaperone protein HscA; Provisional	99.79
PRK13411	653	molecular chaperone DnaK; Provisional	99.79
PRK13410	668	molecular chaperone DnaK; Provisional	99.78
PRK05183	616	hscA chaperone protein HscA; Provisional	99.78
PTZ00186	657	heat shock 70 kDa precursor protein; Provisional	99.78
PTZ00009	653	heat shock 70 kDa protein; Provisional	99.76
PRK11678	450	putative chaperone; Provisional	99.66
COG0443	579	DnaK Molecular chaperone [Posttranslational modifi	99.66
PF00012	602	HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho	99.64
PRK09472	420	ftsA cell division protein FtsA; Reviewed	99.62
TIGR01174	371	ftsA cell division protein FtsA. This bacterial ce	99.62
COG0849	418	ftsA Cell division ATPase FtsA [Cell division and	99.59
COG4820	277	EutJ Ethanolamine utilization protein, possible ch	99.4
KOG0100	663	consensus Molecular chaperones GRP78/BiP/KAR2, HSP	99.37
KOG0101	620	consensus Molecular chaperones HSP70/HSC70, HSP70	99.36
TIGR01175	348	pilM type IV pilus assembly protein PilM. This pro	99.34
PRK13917	344	plasmid segregation protein ParM; Provisional	99.27
PF11104	340	PilM_2: Type IV pilus assembly protein PilM;; PDB:	99.24
TIGR03739	320	PRTRC_D PRTRC system protein D. A novel genetic sy	99.22
KOG0104	902	consensus Molecular chaperones GRP170/SIL1, HSP70	99.14
COG4972	354	PilM Tfp pilus assembly protein, ATPase PilM [Cell	98.99
KOG0103	727	consensus Molecular chaperones HSP105/HSP110/SSE1,	98.89
PRK10719	475	eutA reactivating factor for ethanolamine ammonia	98.73
KOG0102	640	consensus Molecular chaperones mortalin/PBP74/GRP7	98.51
PF06406	318	StbA: StbA protein; InterPro: IPR009440 This entry	98.49
TIGR00241	248	CoA_E_activ CoA-substrate-specific enzyme activase	98.44
COG1924	396	Activator of 2-hydroxyglutaryl-CoA dehydratase (HS	98.15
TIGR03192	293	benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s	98.11
TIGR02261	262	benz_CoA_red_D benzoyl-CoA reductase, bcr type, su	97.94
TIGR03286	404	methan_mark_15 putative methanogenesis marker prot	97.89
PF06277	473	EutA: Ethanolamine utilisation protein EutA; Inter	97.69
PRK13317	277	pantothenate kinase; Provisional	97.22
PF14450	120	FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B	96.23
TIGR02259	432	benz_CoA_red_A benzoyl-CoA reductase, bcr type, su	96.11
PRK11031	496	guanosine pentaphosphate phosphohydrolase; Provisi	96.03
TIGR03706	300	exo_poly_only exopolyphosphatase. It appears that	96.02
PF01869	271	BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In	95.94
PF08841	332	DDR: Diol dehydratase reactivase ATPase-like domai	95.88
COG1548	330	Predicted transcriptional regulator/sugar kinase [	95.28
TIGR00744	318	ROK_glcA_fam ROK family protein (putative glucokin	95.01
PRK10854	513	exopolyphosphatase; Provisional	94.8
PRK09557	301	fructokinase; Reviewed	94.61
COG0248	492	GppA Exopolyphosphatase [Nucleotide transport and	94.53
TIGR03123	318	one_C_unchar_1 probable H4MPT-linked C1 transfer p	94.44
COG4819	473	EutA Ethanolamine utilization protein, possible ch	94.32
PRK03011	358	butyrate kinase; Provisional	94.04
TIGR00555	279	panK_eukar pantothenate kinase, eukaryotic/staphyl	93.78
PF01968	290	Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr	92.39
PF02541	285	Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I	91.57
PF07318	343	DUF1464: Protein of unknown function (DUF1464); In	90.09
COG2441	374	Predicted butyrate kinase [Energy production and c	90.06
COG1521	251	Pantothenate kinase type III (Bvg accessory factor	88.57
PRK13324	258	pantothenate kinase; Reviewed	86.08
PRK13321	256	pantothenate kinase; Reviewed	85.79
PF03309	206	Pan_kinase: Type III pantothenate kinase; InterPro	85.04
TIGR02707	351	butyr_kinase butyrate kinase. This model represent	84.52
KOG2708	336	consensus Predicted metalloprotease with chaperone	82.69
PRK13318	258	pantothenate kinase; Reviewed	82.5
TIGR00671	243	baf pantothenate kinase, type III. This model desc	81.95

>PTZ00452 actin; Provisional

Probab=100.00  E-value=8.6e-85  Score=616.31  Aligned_cols=372  Identities=56%  Similarity=1.023  Sum_probs=348.2

Q ss_pred             CCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHHHH
Q 017125            6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDME   85 (377)
Q Consensus         6 ~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~~   85 (377)
                      ..++||||+||+++|+||+|++.|++++||+++++++.....+...+++++|+++...++...+++|+++|.|.|||.+|
T Consensus         4 ~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e   83 (375)
T PTZ00452          4 QYPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIE   83 (375)
T ss_pred             CCCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHH
Confidence            35689999999999999999999999999999998765322222345678999998888888999999999999999999


Q ss_pred             HHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCceEEE
Q 017125           86 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV  165 (377)
Q Consensus        86 ~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~  165 (377)
                      .+|+|+|.+.|.++++++|+++++|+++++..|++++|++||.|++|++++.+++++++|++|+++|+|||+|++.|+|+
T Consensus        84 ~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~  163 (375)
T PTZ00452         84 IIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCV  163 (375)
T ss_pred             HHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEE
Confidence            99999998899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcC
Q 017125          166 PIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELP  245 (377)
Q Consensus       166 ~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp  245 (377)
                      ||+||+++.++..++++||++++++|.++|.++++.+.+..+.+.++++|+++||++.+++++.+.........+.|.+|
T Consensus       164 PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LP  243 (375)
T PTZ00452        164 PVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLP  243 (375)
T ss_pred             EEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECC
Confidence            99999999999999999999999999999999998888777788999999999999999887776544434456789999


Q ss_pred             CCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCC
Q 017125          246 DGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPS  325 (377)
Q Consensus       246 d~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~  325 (377)
                      ||+.+.++.+||.++|+||+|++.+.+..||+++|.++|.+||.+.|+.|++||||+||+|++|||.+||++||++++|.
T Consensus       244 Dg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~  323 (375)
T PTZ00452        244 DGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPS  323 (375)
T ss_pred             CCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125          326 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF  377 (377)
Q Consensus       326 ~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~  377 (377)
                      ..++++..+++|.+++|+|||++|++++|+++||||+||+|+|+++++||||
T Consensus       324 ~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~  375 (375)
T PTZ00452        324 QLKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF  375 (375)
T ss_pred             CceeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence            8899999999999999999999999999999999999999999999999997

>PTZ00281 actin; Provisional

Probab=100.00  E-value=3.2e-84  Score=614.22  Aligned_cols=376  Identities=91%  Similarity=1.409  Sum_probs=353.3

Q ss_pred             CCCCCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCH
Q 017125            2 ADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNW   81 (377)
Q Consensus         2 ~~~~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~   81 (377)
                      |.+|+.++||||+||+++|+||+|++.|++++||+++++++...+.+.++.+.++|+++...+....+++|+++|.+.||
T Consensus         1 ~~~~~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dw   80 (376)
T PTZ00281          1 MDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW   80 (376)
T ss_pred             CCCCcCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhccccCcEEeccCcCCEEcCH
Confidence            45778899999999999999999999999999999999887655444445678899998877777889999999999999


Q ss_pred             HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCc
Q 017125           82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV  161 (377)
Q Consensus        82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~  161 (377)
                      +.++.+|+++|.+.|.++++++|+++++|+++++..|+++++++||.|+++++++.+++++++|++|++||+|||+|++.
T Consensus        81 d~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~  160 (376)
T PTZ00281         81 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGV  160 (376)
T ss_pred             HHHHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCce
Confidence            99999999999889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceE
Q 017125          162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKS  241 (377)
Q Consensus       162 t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~  241 (377)
                      |+|+||+||+++.++..++++||++++++|+++|.++++.+....+.+.++++|+++|+|+.+++.+++.........+.
T Consensus       161 t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~  240 (376)
T PTZ00281        161 SHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKS  240 (376)
T ss_pred             EEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCccccee
Confidence            99999999999999999999999999999999999988888777778899999999999999988777655444455678


Q ss_pred             EEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHh
Q 017125          242 YELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITA  321 (377)
Q Consensus       242 ~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~  321 (377)
                      |.+|||+.+.++.+||.++|+||+|++.+.+..+|+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++||+.
T Consensus       241 y~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~  320 (376)
T PTZ00281        241 YELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTA  320 (376)
T ss_pred             EECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHH
Confidence            99999999999999999999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125          322 LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF  377 (377)
Q Consensus       322 ~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~  377 (377)
                      ++|...+++++.+++|++++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus       321 ~~p~~~~v~v~~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~  376 (376)
T PTZ00281        321 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF  376 (376)
T ss_pred             hCCCCcceEEecCCCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence            99988899999999999999999999999999999999999999999999999997

>PTZ00466 actin-like protein; Provisional

Probab=100.00  E-value=9.1e-84  Score=609.75  Aligned_cols=371  Identities=52%  Similarity=0.965  Sum_probs=347.2

Q ss_pred             CCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHHH
Q 017125            5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDM   84 (377)
Q Consensus         5 ~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~   84 (377)
                      .+..+||||+||+++|+||+|++.|++++||++++++....+.+...++.++|+++...++...+++|+++|.|.|||.+
T Consensus        10 ~~~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~~   89 (380)
T PTZ00466         10 YSNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWNDM   89 (380)
T ss_pred             ccCCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECCHHHH
Confidence            34678999999999999999999999999999999987655444445678999998877777889999999999999999


Q ss_pred             HHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCceEE
Q 017125           85 EKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT  164 (377)
Q Consensus        85 ~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v  164 (377)
                      |.+|+|+| +.|++.++++|+++++++++++..|+++++++||.|+++++++.++++|++|++|+++|+|||+|++.|+|
T Consensus        90 e~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v  168 (380)
T PTZ00466         90 ENIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHC  168 (380)
T ss_pred             HHHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEE
Confidence            99999998 88999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEc
Q 017125          165 VPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYEL  244 (377)
Q Consensus       165 ~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~l  244 (377)
                      +||+||+++.++..++++||++++++|.++|.+++..+....+.+.++++|+++|+|+.|+.++.+... .....+.|.+
T Consensus       169 ~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~-~~~~~~~y~L  247 (380)
T PTZ00466        169 VSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSE-KALTTLPYIL  247 (380)
T ss_pred             EEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhcc-ccccceeEEC
Confidence            999999999999999999999999999999998888887777888999999999999999877665432 2234578999


Q ss_pred             CCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCC
Q 017125          245 PDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAP  324 (377)
Q Consensus       245 pd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~  324 (377)
                      |||..+.++.+||++||+||+|++++.+..+|+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++||+.+.|
T Consensus       248 Pdg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p  327 (380)
T PTZ00466        248 PDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAP  327 (380)
T ss_pred             CCCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125          325 SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF  377 (377)
Q Consensus       325 ~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~  377 (377)
                      .+.++++..+++|++++|+|||++|++.+|++.||||+||+|+|+++++||||
T Consensus       328 ~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~  380 (380)
T PTZ00466        328 KDITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF  380 (380)
T ss_pred             CCceEEEecCCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence            88899999999999999999999999999999999999999999999999997

>KOG0676 consensus Actin and related proteins [Cytoskeleton]

Probab=100.00  E-value=5.6e-84  Score=590.44  Aligned_cols=369  Identities=81%  Similarity=1.311  Sum_probs=351.7

Q ss_pred             CCCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHH
Q 017125            4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDD   83 (377)
Q Consensus         4 ~~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~   83 (377)
                      ..+.++||||+||..+|+||+|++.|+.++|+.++++++..++.+..+++.+||+++...+   .+++|+++|.+.||++
T Consensus         4 ~~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~---~l~~Pie~Giv~~wd~   80 (372)
T KOG0676|consen    4 ADDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKR---TLKYPIERGIVTDWDD   80 (372)
T ss_pred             cCCcceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccc---cccCccccccccchHH
Confidence            4556999999999999999999999999999999999999999888899999999998887   6799999999999999


Q ss_pred             HHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCceE
Q 017125           84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH  163 (377)
Q Consensus        84 ~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~  163 (377)
                      ++.+|.|+|+..|.+.|+++|+++++|+++|+..|+++++++||.|++|++++...+++  |++|++||+|||+|++.|+
T Consensus        81 me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~  158 (372)
T KOG0676|consen   81 MEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTH  158 (372)
T ss_pred             HHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCcee
Confidence            99999999999999999999999999999999999999999999999999999554444  9999999999999999999


Q ss_pred             EEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEE
Q 017125          164 TVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYE  243 (377)
Q Consensus       164 v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~  243 (377)
                      ++||++|++++++...+++||+++++++...|.++|+.+....+.++++++|+++||++.+++++++...........|+
T Consensus       159 ~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~  238 (372)
T KOG0676|consen  159 VVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYE  238 (372)
T ss_pred             eeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhccccccccccccc
Confidence            99999999999999999999999999999999999999988889999999999999999999999887545555667799


Q ss_pred             cCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhC
Q 017125          244 LPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALA  323 (377)
Q Consensus       244 lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~  323 (377)
                      +|||+.|.++.+||.++|++|+|+..+.+..+|++++.++|.+|++|.|+.|+.||||+||++.+|||.+||++|++.+.
T Consensus       239 lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~  318 (372)
T KOG0676|consen  239 LPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALA  318 (372)
T ss_pred             CCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125          324 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF  377 (377)
Q Consensus       324 ~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~  377 (377)
                      |...+++++.+|++.+++|+||||+|++..|+++||||+||+|+|+.++|||||
T Consensus       319 P~~~~ikv~~pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f  372 (372)
T KOG0676|consen  319 PSTIKIKVIAPPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF  372 (372)
T ss_pred             CCCcceEEecCcccccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence            999999999999999999999999999999999999999999999999999998

>PTZ00004 actin-2; Provisional

Probab=100.00  E-value=7.9e-82  Score=598.69  Aligned_cols=376  Identities=80%  Similarity=1.291  Sum_probs=350.3

Q ss_pred             CCCCCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCH
Q 017125            2 ADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNW   81 (377)
Q Consensus         2 ~~~~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~   81 (377)
                      |+-++.++||||+||+++|+||+|++.|++++||+++++++...+.+...+..++|+++....+...+++|+++|.+.||
T Consensus         1 ~~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~   80 (378)
T PTZ00004          1 MSVEETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNW   80 (378)
T ss_pred             CCCCCCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCH
Confidence            45678889999999999999999999999999999999887655444445678899998777677789999999999999


Q ss_pred             HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCc
Q 017125           82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV  161 (377)
Q Consensus        82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~  161 (377)
                      +.++.+|+|+|.+.|...+.++||++++|+++++..|+++++++||.++++++++.+++++++|++|.+||+|||+|++.
T Consensus        81 d~~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~  160 (378)
T PTZ00004         81 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV  160 (378)
T ss_pred             HHHHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCc
Confidence            99999999999888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCC-cce
Q 017125          162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSA-VEK  240 (377)
Q Consensus       162 t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~-~~~  240 (377)
                      |+|+||+||+++.++..++++||++++++|.++|.+++..+....+.+.++++|+++|+|+.+++++.+....... ...
T Consensus       161 t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~  240 (378)
T PTZ00004        161 SHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEE  240 (378)
T ss_pred             EEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccce
Confidence            9999999999999999999999999999999999998888777777889999999999999999887764432222 367


Q ss_pred             EEEcCCCcEEecCCccccccccCCCCccCCCC-CCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHH
Q 017125          241 SYELPDGQVITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI  319 (377)
Q Consensus       241 ~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL  319 (377)
                      .|.+|||..+.++.+||.+||+||+|++++.+ ..+|+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++||
T Consensus       241 ~y~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL  320 (378)
T PTZ00004        241 SYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKEL  320 (378)
T ss_pred             EEECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHH
Confidence            89999999999999999999999999998887 89999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125          320 TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF  377 (377)
Q Consensus       320 ~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~  377 (377)
                      ++++|...++++..+++|.+++|+|||++|++.+|++.||||+||+|+|++++.||||
T Consensus       321 ~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~  378 (378)
T PTZ00004        321 TTLAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF  378 (378)
T ss_pred             HHhCCCCccEEEecCCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence            9999988889999999999999999999999999999999999999999999999997

>PTZ00280 Actin-related protein 3; Provisional

Probab=100.00  E-value=8.4e-76  Score=564.27  Aligned_cols=370  Identities=41%  Similarity=0.748  Sum_probs=333.3

Q ss_pred             CCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCcc---ccCCCccceeccchhcccCcceeeccccCCccCCHHH
Q 017125            7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVM---VGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDD   83 (377)
Q Consensus         7 ~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~---~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~   83 (377)
                      .++||||+||+++|+||+|++.|++++||++++++.....   .+....++++|+++........+++|+++|.|.|||.
T Consensus         4 ~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd~   83 (414)
T PTZ00280          4 LPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVEDWDL   83 (414)
T ss_pred             CCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCCHHH
Confidence            5689999999999999999999999999999988663211   1112336789999988877789999999999999999


Q ss_pred             HHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhc----------CCceEE
Q 017125           84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS----------GRTTGI  153 (377)
Q Consensus        84 ~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~----------g~~~~l  153 (377)
                      ++.+|+|+|.+.|.++++++++++++|++++...|++++|++||.++++++++.+++++++|++          |.++|+
T Consensus        84 ~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tgl  163 (414)
T PTZ00280         84 MEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGT  163 (414)
T ss_pred             HHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEE
Confidence            9999999988899999999999999999999999999999999999999999999999999999          999999


Q ss_pred             EEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhc
Q 017125          154 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAK  233 (377)
Q Consensus       154 VVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~  233 (377)
                      |||+|++.|+|+||++|+++.++.+++++||++++++|.++|++++..+....+.+.++++|+++|++..++.++++...
T Consensus       164 VVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~  243 (414)
T PTZ00280        164 VIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYD  243 (414)
T ss_pred             EEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999888877666678999999999999999888776543


Q ss_pred             cC-CCcceEEEcCCC---c--EEecCCccccccccCCCCccCCCC-CCChHHHHHHHHhcCChhHHHHhhcCceeccCCc
Q 017125          234 IS-SAVEKSYELPDG---Q--VITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGST  306 (377)
Q Consensus       234 ~~-~~~~~~~~lpd~---~--~i~i~~~~~~~~E~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s  306 (377)
                      .. ......|.+||.   .  .+.++.+||.+||+||+|++++.+ ..+|+++|.++|++||+|.|+.|++||+|+||+|
T Consensus       244 ~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s  323 (414)
T PTZ00280        244 SDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGST  323 (414)
T ss_pred             cCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcc
Confidence            21 223456888873   3  789999999999999999887654 4599999999999999999999999999999999


Q ss_pred             CCcChHHHHHHHHHhhC----------------CCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCc
Q 017125          307 MFPGIADRMSKEITALA----------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPS  370 (377)
Q Consensus       307 ~i~g~~~rl~~eL~~~~----------------~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~  370 (377)
                      ++|||.+||++||++++                |...+++|..++++.+++|+|||++|++++|+++||||+||+|+|++
T Consensus       324 ~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas~~~f~~~~itk~eY~E~G~~  403 (414)
T PTZ00280        324 MFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPS  403 (414)
T ss_pred             cCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEEChhhcccCcchhhheEEHHHHhccChH
Confidence            99999999999999986                34567899999999999999999999999999999999999999999


Q ss_pred             cccccc
Q 017125          371 IVHRKC  376 (377)
Q Consensus       371 ~~~~k~  376 (377)
                      +++|+.
T Consensus       404 i~~~~~  409 (414)
T PTZ00280        404 ICRYNN  409 (414)
T ss_pred             heeecc
Confidence            999873

>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton

Probab=100.00  E-value=3e-76  Score=566.80  Aligned_cols=368  Identities=51%  Similarity=0.969  Sum_probs=324.0

Q ss_pred             CCCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHH
Q 017125            4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDD   83 (377)
Q Consensus         4 ~~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~   83 (377)
                      +|+.++||||+||++||+||+|++.|++++|++++++.....     ..++++|+++........+++|+++|.+.||+.
T Consensus         1 ~d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~   75 (393)
T PF00022_consen    1 GDENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNS-----SNDYYVGDEALSPRSNLELRSPIENGVIVDWDA   75 (393)
T ss_dssp             -TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSS-----SSSCEETHHHHHTGTGEEEEESEETTEESSHHH
T ss_pred             CCCCCEEEEECCCceEEEEECCCCCCCCcCCCcccccccccc-----ceeEEeecccccchhheeeeeeccccccccccc
Confidence            478999999999999999999999999999999998876542     125778988666666678999999999999999


Q ss_pred             HHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCceE
Q 017125           84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH  163 (377)
Q Consensus        84 ~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~  163 (377)
                      ++.+|+++|.+.|..++++++|++++|+++++..|+.+++++||++++++++++++++||+|++|.++|||||+|++.|+
T Consensus        76 ~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~  155 (393)
T PF00022_consen   76 LEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTS  155 (393)
T ss_dssp             HHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EE
T ss_pred             cccccccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeeee
Confidence            99999999988899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCC-----------------CcChhHHHHHHHHHHhcceeccCHH
Q 017125          164 TVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYS-----------------FTTTAEREIVRDMKEKLAYIALDYE  226 (377)
Q Consensus       164 v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~-----------------~~~~~~~~~~~~ik~~~~~v~~~~~  226 (377)
                      |+||+||+++.++.+++++||++++++|.++|.+++..                 +....+...++++|+++|+++.+..
T Consensus       156 v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~  235 (393)
T PF00022_consen  156 VVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPD  235 (393)
T ss_dssp             EEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHH
T ss_pred             eeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccc
Confidence            99999999999999999999999999999999987433                 2233457889999999999999887


Q ss_pred             HHHHHhccCCCcceEEEcCCCcEEecCCccccccccCCCCccCCCCCC-------ChHHHHHHHHhcCChhHHHHhhcCc
Q 017125          227 QELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESA-------GIHETTYNSIMKCDVDIRKDLYGNI  299 (377)
Q Consensus       227 ~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~-------~l~~~I~~~i~~~~~~~~~~l~~nI  299 (377)
                      . .+...........|.+|||+.+.++.+|+.++|+||+|+..+.+..       +|+++|.++|.+||.+.|+.|++||
T Consensus       236 ~-~~~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nI  314 (393)
T PF00022_consen  236 E-EQEEQASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNI  314 (393)
T ss_dssp             H-HHHHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTE
T ss_pred             c-ccccccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccce
Confidence            5 1111222456788999999999999999999999999999887766       9999999999999999999999999


Q ss_pred             eeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC-CCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125          300 VLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP-ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF  377 (377)
Q Consensus       300 vl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~-~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~  377 (377)
                      |||||+|++|||.+||++||..+.+...++++..++ +|.+++|+|||++|++.+|+++||||+||+|+|+++++||||
T Consensus       315 vl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~  393 (393)
T PF00022_consen  315 VLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF  393 (393)
T ss_dssp             EEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred             EEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence            999999999999999999999999888899999998 999999999999999999999999999999999999999998

These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....

>smart00268 ACTIN Actin

Probab=100.00  E-value=6.2e-75  Score=553.36  Aligned_cols=369  Identities=68%  Similarity=1.181  Sum_probs=340.5

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHHHHHH
Q 017125            8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKI   87 (377)
Q Consensus         8 ~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~~~~   87 (377)
                      ++||||+||++||+||++++.|++++||+++++++.....+ ....+++|+++....+...+++|+++|.+.||+.++.+
T Consensus         2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~-~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~i   80 (373)
T smart00268        2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVG-DAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEKI   80 (373)
T ss_pred             CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccC-CCcceEecchhhhcCCCceecCCCcCCEEeCHHHHHHH
Confidence            58999999999999999999999999999999876532111 23467899998776666689999999999999999999


Q ss_pred             HHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCceEEEEe
Q 017125           88 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI  167 (377)
Q Consensus        88 ~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~~v  167 (377)
                      |+++|.+.|+..++++++++++|..++...|+.+++++||.++++++++++++++++|++|.++|+|||+|++.|+|+||
T Consensus        81 ~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv  160 (373)
T smart00268       81 WDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPV  160 (373)
T ss_pred             HHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEE
Confidence            99999778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhcc---CCCcceEEEc
Q 017125          168 YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKI---SSAVEKSYEL  244 (377)
Q Consensus       168 ~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~---~~~~~~~~~l  244 (377)
                      +||.++.++.+++++||++++++|.++|++++..+....+.+.++++|+++|+++.+++++++....   .......|.+
T Consensus       161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l  240 (373)
T smart00268      161 VDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYEL  240 (373)
T ss_pred             ECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEEC
Confidence            9999999999999999999999999999886666665667789999999999999998877765432   2445678999


Q ss_pred             CCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCC
Q 017125          245 PDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAP  324 (377)
Q Consensus       245 pd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~  324 (377)
                      |||..+.++.+|+.++|.||+|+..+.+..+|+++|.++|.+||.+.|+.+++||+||||+|++|||.+||++||+.+.|
T Consensus       241 pdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p  320 (373)
T smart00268      241 PDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAP  320 (373)
T ss_pred             CCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCC
Confidence            99999999999999999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125          325 SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF  377 (377)
Q Consensus       325 ~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~  377 (377)
                      ...++++..+++|.+++|.|||++|++++|++.||||+||+|+|+++++||||
T Consensus       321 ~~~~v~v~~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~  373 (373)
T smart00268      321 KKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF  373 (373)
T ss_pred             CCceeEEecCCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence            88889999999999999999999999999999999999999999999999998

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily

>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]

Probab=100.00  E-value=2.2e-74  Score=512.00  Aligned_cols=369  Identities=40%  Similarity=0.750  Sum_probs=319.3

Q ss_pred             CCCCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcc-cCcceeeccccCCccCCH
Q 017125            3 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK-RGILTLKYPIEHGIVNNW   81 (377)
Q Consensus         3 ~~~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~-~~~~~~~~p~~~g~i~d~   81 (377)
                      -+++..+||||+||+++|+||+|++.|++++|+.++...+...-. .+.+.++++.++... +....++.|+++|.+.||
T Consensus         7 ggdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d~-~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~dW   85 (426)
T KOG0679|consen    7 GGDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGDA-EDKKGYYVDENAIHVPRPGMEVKTPIKNGLVEDW   85 (426)
T ss_pred             cccccceEEEeCCCceEeccccCCCCccccccceeeeeecccCcc-ccccceEeechhccCCCCCCeeccchhcCCcccH
Confidence            368899999999999999999999999999999998643222111 112336788777654 566789999999999999


Q ss_pred             HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCc
Q 017125           82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV  161 (377)
Q Consensus        82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~  161 (377)
                      |.++.+|+|.|..+|..+|.++|+++++|+.+++..|++++|.+||++++|+++++..++|++|++|+.|+||||||+++
T Consensus        86 D~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~  165 (426)
T KOG0679|consen   86 DLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATH  165 (426)
T ss_pred             HHHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCC
Confidence            99999999999889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhH---------------------------------H
Q 017125          162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAE---------------------------------R  208 (377)
Q Consensus       162 t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~---------------------------------~  208 (377)
                      |+|+||+||+++.+++++.++||+.|+..++++|...+.++.+...                                 .
T Consensus       166 ~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~  245 (426)
T KOG0679|consen  166 TSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQ  245 (426)
T ss_pred             ceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988776542110                                 1


Q ss_pred             HHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEecCCccccccccCCCCccCC------------CCCCCh
Q 017125          209 EIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIG------------MESAGI  276 (377)
Q Consensus       209 ~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~------------~~~~~l  276 (377)
                      ..++++|++++.++..+-.+.   ...+-.++.|++|||.....+.+||++||.||.|+...            ....|+
T Consensus       246 ~v~~e~ke~v~qv~dtp~de~---~~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~  322 (426)
T KOG0679|consen  246 RVYQEFKESVLQVSDTPFDEE---VAAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGL  322 (426)
T ss_pred             HHHHHHHHHHHhccCCCCccc---ccccCCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccccCc
Confidence            235555655555542211111   11123578999999999999999999999999998742            235689


Q ss_pred             HHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC---CCccccchhhhhhhcccc
Q 017125          277 HETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLST  353 (377)
Q Consensus       277 ~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~---~~~~~~w~Gasi~a~l~~  353 (377)
                      ++++..+|..||+|+|..|+.|||+|||+|.|+||.+||++||+.++|.+ ++++++..   ++.+++|+||||+|+|++
T Consensus       323 ~~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILASLgt  401 (426)
T KOG0679|consen  323 PHLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILASLGT  401 (426)
T ss_pred             hHHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhcccc
Confidence            99999999999999999999999999999999999999999999999997 99998864   799999999999999999


Q ss_pred             cccccccHHHHhhcCC-ccccccc
Q 017125          354 FQQMWIAKAEYDESGP-SIVHRKC  376 (377)
Q Consensus       354 ~~~~~itr~ey~e~G~-~~~~~k~  376 (377)
                      |+++||+|+||+|.|. .-+.|||
T Consensus       402 Fqq~WiSKqEYEE~G~d~~ve~rc  425 (426)
T KOG0679|consen  402 FQQLWISKQEYEEVGKDQLVERRC  425 (426)
T ss_pred             HHHHhhhHHHHHHhhhHHHHhhcC
Confidence            9999999999999999 8899998

>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton

Probab=100.00  E-value=3.4e-72  Score=533.95  Aligned_cols=367  Identities=71%  Similarity=1.200  Sum_probs=336.3

Q ss_pred             CEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCc-ceeeccccCCccCCHHHHHHH
Q 017125            9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVNNWDDMEKI   87 (377)
Q Consensus         9 ~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~p~~~g~i~d~~~~~~~   87 (377)
                      +||||+||+++|+||++++.|++++||+++++++.....+.+....++|+++...... ..+++|+++|.+.||+.++.+
T Consensus         1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~   80 (371)
T cd00012           1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI   80 (371)
T ss_pred             CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence            6899999999999999999999999999999876543333345678899998776553 789999999999999999999


Q ss_pred             HHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCceEEEEe
Q 017125           88 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI  167 (377)
Q Consensus        88 ~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~~v  167 (377)
                      |+++|.+.|..+++++++++++|+++++..|+.+++++||.++++++++++++++|+|++|.++|+|||+|++.|+|+||
T Consensus        81 ~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv  160 (371)
T cd00012          81 WDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPV  160 (371)
T ss_pred             HHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEE
Confidence            99999888888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHH-hccCCCcceEEEcCC
Q 017125          168 YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELET-AKISSAVEKSYELPD  246 (377)
Q Consensus       168 ~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~-~~~~~~~~~~~~lpd  246 (377)
                      +||+++.++..++++||+++++++.++|++++..+....+...++++|+++|+++.++.++.+. ..........|.+||
T Consensus       161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd  240 (371)
T cd00012         161 YDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPD  240 (371)
T ss_pred             ECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCC
Confidence            9999999999999999999999999999988876666667889999999999999988776532 223344567899999


Q ss_pred             CcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCC-
Q 017125          247 GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPS-  325 (377)
Q Consensus       247 ~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~-  325 (377)
                      ++.+.++.+|+.++|+||+|+..+....+|+++|.++|+.||.+.|+.+++||+||||+|++|||.+||++||..+.|. 
T Consensus       241 ~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~  320 (371)
T cd00012         241 GRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPS  320 (371)
T ss_pred             CeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcc
Confidence            9999999999999999999998888889999999999999999999999999999999999999999999999999987 


Q ss_pred             -CceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccc
Q 017125          326 -SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRK  375 (377)
Q Consensus       326 -~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k  375 (377)
                       ...+++...++|.+++|.|||++|++.+|+++||||+||+|+|+++++||
T Consensus       321 ~~~~~~~~~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k  371 (371)
T cd00012         321 KDTKVKVIAPPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK  371 (371)
T ss_pred             cceEEEEccCCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence             56678888889999999999999999999999999999999999999987

Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.

>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]

Probab=100.00  E-value=1.2e-72  Score=476.60  Aligned_cols=371  Identities=50%  Similarity=0.908  Sum_probs=345.9

Q ss_pred             CCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCC--ccccCCCccceeccchhcccCcceeeccccCCccCCHH
Q 017125            5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG--VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWD   82 (377)
Q Consensus         5 ~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~--~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~   82 (377)
                      ++.++||.|.|+.+.|+||+|++-|.+++|+.+++|--..  ......-++..||+++...++..++.||+++|.+.||+
T Consensus         2 d~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnwd   81 (389)
T KOG0677|consen    2 DSRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNWD   81 (389)
T ss_pred             CCCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccChH
Confidence            5689999999999999999999999999999999985332  11122347889999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCce
Q 017125           83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS  162 (377)
Q Consensus        83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t  162 (377)
                      +++++|+|.|.++|.++|.+.++++++||++|.+.|++++++.||+++|.++++.-++++++|+.|..+|+|||.|.+.|
T Consensus        82 dM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVT  161 (389)
T KOG0677|consen   82 DMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVT  161 (389)
T ss_pred             HHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEE
Q 017125          163 HTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSY  242 (377)
Q Consensus       163 ~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~  242 (377)
                      +|+||++|..+++-..+++++|+++++||.++|.++|+.+...++.+.++++|+++||++.|.+.+.+....+.-.-..|
T Consensus       162 Hi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Y  241 (389)
T KOG0677|consen  162 HIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESY  241 (389)
T ss_pred             EEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999988877777777788899


Q ss_pred             EcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhh
Q 017125          243 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITAL  322 (377)
Q Consensus       243 ~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~  322 (377)
                      .+|||..|.++.|||.+||.||+|.+++.+.+++.+++.++|+..++|.|..+.++|||.||++..||+..||++||+++
T Consensus       242 tLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkql  321 (389)
T KOG0677|consen  242 TLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQL  321 (389)
T ss_pred             ecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999875


Q ss_pred             CC-----------CCceEEEECCCCCccccchhhhhhhcc-cccccccccHHHHhhcCCcccccc
Q 017125          323 AP-----------SSMKIKVVAPPERKYSVWIGGSILASL-STFQQMWIAKAEYDESGPSIVHRK  375 (377)
Q Consensus       323 ~~-----------~~~~v~v~~~~~~~~~~w~Gasi~a~l-~~~~~~~itr~ey~e~G~~~~~~k  375 (377)
                      .-           ..+++++-.||-+..-+|+||+.+|.+ ..-+++|+||+||.|.|++.+.+.
T Consensus       322 yl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~  386 (389)
T KOG0677|consen  322 YLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL  386 (389)
T ss_pred             HHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence            42           235688888999999999999999996 567899999999999999988764

>COG5277 Actin and related proteins [Cytoskeleton]

Probab=100.00  E-value=1.3e-68  Score=507.52  Aligned_cols=374  Identities=55%  Similarity=0.997  Sum_probs=340.7

Q ss_pred             CCCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeC-CCCccccCCCccceeccchhcccC--cceeeccccCCccCC
Q 017125            4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR-HTGVMVGMGQKDAYVGDEAQSKRG--ILTLKYPIEHGIVNN   80 (377)
Q Consensus         4 ~~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~-~~~~~~~~~~~~~~vg~~~~~~~~--~~~~~~p~~~g~i~d   80 (377)
                      .+..++||||+||+++|+||+|++.|++++|+++++.+ +..++....+++.++|+++....+  ...+++|+++|.+.|
T Consensus         3 ~~~~~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~   82 (444)
T COG5277           3 GDNVPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILN   82 (444)
T ss_pred             CCCCCeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCC
Confidence            34455599999999999999999999999999999886 444555556788899999988765  678999999999999


Q ss_pred             HHHHHHHHHHhccc--ccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCc--eEEEEe
Q 017125           81 WDDMEKIWHHTFYN--ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--TGIVLD  156 (377)
Q Consensus        81 ~~~~~~~~~~~~~~--~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~--~~lVVD  156 (377)
                      |++++++|+++|.+  .+...+.++|+++++|++++...|+++++++||.++++++++..++++++|+.|..  +|||||
T Consensus        83 W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD  162 (444)
T COG5277          83 WDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVID  162 (444)
T ss_pred             cHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEE
Confidence            99999999999988  68888999999999999999999999999999999999999999999999999999  999999


Q ss_pred             CCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHH-----cCCCCcCh---hHHHHHHHHHHhcc-------ee
Q 017125          157 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTT---AEREIVRDMKEKLA-------YI  221 (377)
Q Consensus       157 iG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~---~~~~~~~~ik~~~~-------~v  221 (377)
                      +|++.|+|+||+||.++.++.+++++||++++.+|..+|..     +++.+...   .+.+.++.+|+++|       |+
T Consensus       163 ~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~  242 (444)
T COG5277         163 SGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYV  242 (444)
T ss_pred             cCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccch
Confidence            99999999999999999999999999999999999999998     66666665   56889999999999       88


Q ss_pred             ccCHHHHHHHhcc----------------CCCcceEEEcCCCcEEecCCc-cccccccCCCCc--cCCCCCCC-------
Q 017125          222 ALDYEQELETAKI----------------SSAVEKSYELPDGQVITIGAE-RFRCPEVLFQPS--MIGMESAG-------  275 (377)
Q Consensus       222 ~~~~~~~~~~~~~----------------~~~~~~~~~lpd~~~i~i~~~-~~~~~E~lf~p~--~~~~~~~~-------  275 (377)
                      ..+.++..+....                .......+..|+++.+.+..+ ||++||.+|.|.  ..+.+.++       
T Consensus       243 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~  322 (444)
T COG5277         243 SLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQ  322 (444)
T ss_pred             hhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhh
Confidence            8777665544332                233456789999999999998 999999999999  65555555       


Q ss_pred             --------------------hHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC
Q 017125          276 --------------------IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP  335 (377)
Q Consensus       276 --------------------l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~  335 (377)
                                          |++++.++|..++.+.|+.|++|||||||+|++|||.+||++||..+.|....+++..++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~  402 (444)
T COG5277         323 ELVAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPP  402 (444)
T ss_pred             hhhhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCC
Confidence                                999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125          336 ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF  377 (377)
Q Consensus       336 ~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~  377 (377)
                      +|.+.+|+|||++|++..|.+.||||+||+|+|+++++++||
T Consensus       403 ~~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~  444 (444)
T COG5277         403 DPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF  444 (444)
T ss_pred             chhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence            999999999999999999999999999999999999999987

>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]

Probab=100.00  E-value=4.4e-67  Score=454.81  Aligned_cols=362  Identities=30%  Similarity=0.570  Sum_probs=328.0

Q ss_pred             CCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhccc--CcceeeccccCCccCCHHH
Q 017125            6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR--GILTLKYPIEHGIVNNWDD   83 (377)
Q Consensus         6 ~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~--~~~~~~~p~~~g~i~d~~~   83 (377)
                      +..|||+|+|++++|+|++++..|. .+||++.+.++.       .+..++|++..+.+  +...+++|+++|.+++|+.
T Consensus         2 ~~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~~-------~rr~f~~nei~ec~D~ssL~y~rp~erGyLvnW~t   73 (400)
T KOG0680|consen    2 ETTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKFG-------RRRSFLANEIDECKDISSLFYRRPHERGYLVNWDT   73 (400)
T ss_pred             CCceEEEcCCceeEEeccCCCCCce-eccchhhhcccc-------cchhhhhhhhhhccCccceEEeehhhcceeEeehh
Confidence            5679999999999999999999998 669999887654       34578898877764  3466799999999999999


Q ss_pred             HHHHHHHhcccc-cccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhc---C--------Cce
Q 017125           84 MEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS---G--------RTT  151 (377)
Q Consensus        84 ~~~~~~~~~~~~-L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~---g--------~~~  151 (377)
                      ..++|+++|.+. .+++.+++.+++++|.++-++..+...+++||+|+|.+++-.+.+.++++-.   +        ...
T Consensus        74 q~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c  153 (400)
T KOG0680|consen   74 QSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSEC  153 (400)
T ss_pred             HHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccce
Confidence            999999999653 4566789999999999999999999999999999999999999999888762   1        237


Q ss_pred             EEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHH
Q 017125          152 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELET  231 (377)
Q Consensus       152 ~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~  231 (377)
                      ++|||.|++.|+|+|+++|.+..++++++++||+.+|++|++.+..++.++.+  +...++++|++.|||++|+.+.++.
T Consensus       154 ~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNvmd--ET~vVNeiKEdvcfVSqnF~~~m~~  231 (400)
T KOG0680|consen  154 CLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNVMD--ETYVVNEIKEDVCFVSQNFKEDMDI  231 (400)
T ss_pred             EEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcccc--hhhhhhhhhhheEEechhhHHHHHH
Confidence            99999999999999999999999999999999999999999999998888765  6788999999999999999999887


Q ss_pred             hccC---CCcceEEEcCC-------------------CcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCCh
Q 017125          232 AKIS---SAVEKSYELPD-------------------GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDV  289 (377)
Q Consensus       232 ~~~~---~~~~~~~~lpd-------------------~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~  289 (377)
                      +...   +.....|.+||                   .+.|.+..|||.+||+||+|++++..+.||+|+|.++|..||.
T Consensus       232 ~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe  311 (400)
T KOG0680|consen  232 AKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPE  311 (400)
T ss_pred             HhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHH
Confidence            6543   23455677776                   4678889999999999999999999999999999999999999


Q ss_pred             hHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCC
Q 017125          290 DIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP  369 (377)
Q Consensus       290 ~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~  369 (377)
                      ++|+.|+.|||++||++++|||.+||..||++++|.++.++|..+.||..-+|-||+.+|.+++|...||||+||+|+|+
T Consensus       312 ~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~  391 (400)
T KOG0680|consen  312 EVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGP  391 (400)
T ss_pred             HHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCCcceeeehhccccccCcchhcceecHhhHhhcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccC
Q 017125          370 SIVHRKCF  377 (377)
Q Consensus       370 ~~~~~k~~  377 (377)
                      +++.+|.|
T Consensus       392 ~~~~~~~~  399 (400)
T KOG0680|consen  392 SWCTKKRF  399 (400)
T ss_pred             hhhhhhcc
Confidence            99999876

>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]

Probab=100.00  E-value=1.9e-55  Score=405.42  Aligned_cols=365  Identities=28%  Similarity=0.578  Sum_probs=314.9

Q ss_pred             CCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCc-ceeeccccCCccCCHHHH
Q 017125            6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVNNWDDM   84 (377)
Q Consensus         6 ~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~p~~~g~i~d~~~~   84 (377)
                      ...|||||+||+.+|+||+|+..|+++|+|++.++++...    +..-.+||++....... ...++||++.++++|+.+
T Consensus        22 n~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~----~~s~t~vgnd~~~~~~~Rs~~rSPFd~nVvtNwel~   97 (645)
T KOG0681|consen   22 NTIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKL----GASVTLVGNDILNFQGVRSSPRSPFDRNVVTNWELM   97 (645)
T ss_pred             CCCcEEEeCCceeEeecccCCCCccchhhhhhcccccccc----ccccccccchhhhhhhhhccCCCCCcCCccccHHHH
Confidence            3679999999999999999999999999999999986643    12234688776654332 356899999999999999


Q ss_pred             HHHHHHhcccccccCCC--CCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhh-hcCC---ceEEEEeCC
Q 017125           85 EKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY-ASGR---TTGIVLDSG  158 (377)
Q Consensus        85 ~~~~~~~~~~~L~~~~~--~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~-~~g~---~~~lVVDiG  158 (377)
                      |++++|+| .+|+.+.+  +||+++||+..+|...|..+.++|||.||+|+|.+--+++.+.| .++.   .+|+||++|
T Consensus        98 E~ilDY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g  176 (645)
T KOG0681|consen   98 EQILDYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMG  176 (645)
T ss_pred             HHHHHHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecC
Confidence            99999998 89999874  79999999999999999999999999999999999999999998 3333   369999999


Q ss_pred             CCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccC---
Q 017125          159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKIS---  235 (377)
Q Consensus       159 ~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~---  235 (377)
                      ++.|.|.||.||..+....+++++||++...||.++++.++..+........++.++..+|+++.||.+++......   
T Consensus       177 ~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~d~~  256 (645)
T KOG0681|consen  177 HSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILEMDYY  256 (645)
T ss_pred             CCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhhhhhh
Confidence            99999999999999999999999999999999999999887776666677789999999999998877643321100   


Q ss_pred             ----------------------------------------------------------------------CCcceEEE--
Q 017125          236 ----------------------------------------------------------------------SAVEKSYE--  243 (377)
Q Consensus       236 ----------------------------------------------------------------------~~~~~~~~--  243 (377)
                                                                                            .+....|.  
T Consensus       257 d~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~~~ll  336 (645)
T KOG0681|consen  257 DENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENRREDEQQLESYNKAQGEQESNLDLEQKFPLL  336 (645)
T ss_pred             hccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhhchhh
Confidence                                                                                  00000000  


Q ss_pred             -cCC----------------------------------------------------------------------------
Q 017125          244 -LPD----------------------------------------------------------------------------  246 (377)
Q Consensus       244 -lpd----------------------------------------------------------------------------  246 (377)
                       +|+                                                                            
T Consensus       337 ~v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~~~  416 (645)
T KOG0681|consen  337 NVPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQELKD  416 (645)
T ss_pred             cchhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence             000                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 017125          247 --------------------------------------------------------------------------------  246 (377)
Q Consensus       247 --------------------------------------------------------------------------------  246 (377)
                                                                                                      
T Consensus       417 r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~  496 (645)
T KOG0681|consen  417 RKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDLKSLNHELLEFDPHFTQYVEGTT  496 (645)
T ss_pred             hhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHHhhCccccccccccc
Confidence                                                                                            


Q ss_pred             -------------CcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHH
Q 017125          247 -------------GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAD  313 (377)
Q Consensus       247 -------------~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~  313 (377)
                                   ...+.++.+++++||++|+|+++|.+++||.|++..++++.|.+.+..+++||+||||+|++||+++
T Consensus       497 d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmke  576 (645)
T KOG0681|consen  497 DPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKE  576 (645)
T ss_pred             CcccCcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHH
Confidence                         0144567799999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccc
Q 017125          314 RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRK  375 (377)
Q Consensus       314 rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k  375 (377)
                      ||.+||.++.|..+.+.|+.+.||.++||.||+.+|...+|...++||+||+|+|++.++.-
T Consensus       577 Ri~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh  638 (645)
T KOG0681|consen  577 RIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEH  638 (645)
T ss_pred             HHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999887653

>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]

Probab=100.00  E-value=1.7e-52  Score=364.48  Aligned_cols=368  Identities=39%  Similarity=0.678  Sum_probs=313.1

Q ss_pred             CCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCc--------cccCCCccceeccchhcccCcceeeccccCCc
Q 017125            6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV--------MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGI   77 (377)
Q Consensus         6 ~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~--------~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~   77 (377)
                      .+.++|+|+|+.++|.||+|+..|++++|++++......+        .-+..+.++++|++++. .+.+.+.+|+++|.
T Consensus         3 ~~~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~-~~~ysl~ypiRhg~   81 (415)
T KOG0678|consen    3 GNLPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALD-ATTYSLKYPIRHGQ   81 (415)
T ss_pred             CCCceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHh-hcccccccceeccc
Confidence            3456999999999999999999999999999876432211        11234567899999988 55788999999999


Q ss_pred             cCCHHHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcC--------C
Q 017125           78 VNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG--------R  149 (377)
Q Consensus        78 i~d~~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g--------~  149 (377)
                      +.||+.++++|...+.++|...|++|..++++|+.++.++|+.+.++.||.++++.+++.-++++|+-+.-        .
T Consensus        82 ve~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~  161 (415)
T KOG0678|consen   82 VEDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERF  161 (415)
T ss_pred             cccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhhe
Confidence            99999999999999989999999999999999999999999999999999999999999999998876542        2


Q ss_pred             ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHH
Q 017125          150 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEL  229 (377)
Q Consensus       150 ~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~  229 (377)
                      -+|+|+|.|.+.|.|.||.+|+++-++.+.+|+.|++++..+.++|++++...+.....+.++.+|+++||+.+|.-.+.
T Consensus       162 ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivkef  241 (415)
T KOG0678|consen  162 LTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKEF  241 (415)
T ss_pred             eeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHHH
Confidence            48999999999999999999999999999999999999999999999998888887788999999999999999988776


Q ss_pred             HHhccCCCc-ceEE---EcCC--CcEEecCCccccccccCCCCccCCCC-CCChHHHHHHHHhcCChhHHHHhhcCceec
Q 017125          230 ETAKISSAV-EKSY---ELPD--GQVITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCDVDIRKDLYGNIVLS  302 (377)
Q Consensus       230 ~~~~~~~~~-~~~~---~lpd--~~~i~i~~~~~~~~E~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~  302 (377)
                      .+....... -+.|   .+-.  ...++++.+||..||++|.|+....+ ...+++.+...|+.||+|.|+.|++||++.
T Consensus       242 ~k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivls  321 (415)
T KOG0678|consen  242 AKYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLS  321 (415)
T ss_pred             HHhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhhc
Confidence            654432110 0111   1111  23466788999999999999986544 457999999999999999999999999999


Q ss_pred             cCCcCCcChHHHHHHHHHhhCC--------------CCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcC
Q 017125          303 GGSTMFPGIADRMSKEITALAP--------------SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESG  368 (377)
Q Consensus       303 GG~s~i~g~~~rl~~eL~~~~~--------------~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G  368 (377)
                      ||.+..++|..|++.++..+..              ....+.+....-..+++|.|++++|+...|-..+=||++|+|+|
T Consensus       322 ggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~avwfggs~lastpef~~~~~tk~~yee~g  401 (415)
T KOG0678|consen  322 GGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRTAVWFGGSKLASTPEFVPACHTKEDYEEYG  401 (415)
T ss_pred             cchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhcceeccCccccCCcccccccCcchhhhhhC
Confidence            9999999999999988865431              12235666655667999999999999999999999999999999


Q ss_pred             Cccccc
Q 017125          369 PSIVHR  374 (377)
Q Consensus       369 ~~~~~~  374 (377)
                      ++|++.
T Consensus       402 ~si~r~  407 (415)
T KOG0678|consen  402 PSICRT  407 (415)
T ss_pred             hhhhhc
Confidence            999875

>KOG0797 consensus Actin-related protein [Cytoskeleton]

Probab=100.00  E-value=1.5e-38  Score=291.84  Aligned_cols=312  Identities=20%  Similarity=0.391  Sum_probs=239.1

Q ss_pred             cceeeccccCCccCC----------HHHHHHHHHHhcccccccCCC---CCcEEEeeCCCCCHHhHHHHHhhhcccCCCC
Q 017125           66 ILTLKYPIEHGIVNN----------WDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFETFNTP  132 (377)
Q Consensus        66 ~~~~~~p~~~g~i~d----------~~~~~~~~~~~~~~~L~~~~~---~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~  132 (377)
                      .+.+++|+++|.+.-          .+++.++|+|++.+.|.+.++   .+.+|+++|....+...+.++.++|-+++|.
T Consensus       178 ~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~  257 (618)
T KOG0797|consen  178 PYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFN  257 (618)
T ss_pred             cceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccc
Confidence            467899999997632          367899999999899999864   6889999999999999999999999999999


Q ss_pred             eEEEechhhhhhhhcCCceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCC-----cChhH
Q 017125          133 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSF-----TTTAE  207 (377)
Q Consensus       133 ~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~-----~~~~~  207 (377)
                      ++.++.+++|++|+.|.+++||||||+..|+|+||.||..+.++...+++||.+|++.|..+|++.+..+     .+..+
T Consensus       258 ~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d  337 (618)
T KOG0797|consen  258 SAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPID  337 (618)
T ss_pred             eEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999877654     34567


Q ss_pred             HHHHHHHHHhcceeccCHHH-HHHHh--ccCCC----------------------------------cceEEEcCCCc--
Q 017125          208 REIVRDMKEKLAYIALDYEQ-ELETA--KISSA----------------------------------VEKSYELPDGQ--  248 (377)
Q Consensus       208 ~~~~~~ik~~~~~v~~~~~~-~~~~~--~~~~~----------------------------------~~~~~~lpd~~--  248 (377)
                      +.+++++|+++|......-. ....+  ..+..                                  ....|..||.+  
T Consensus       338 ~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~~~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~  417 (618)
T KOG0797|consen  338 WLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPPTLKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDL  417 (618)
T ss_pred             HHHHHHHHHHhccccHhhhhhhhhhhhccCCCCcceeeeeeccchhhccchhhhhhhhhhccccccccccccCCCCcccc
Confidence            88999999999977532111 00000  00000                                  00112222210  


Q ss_pred             ---------------------EEecC-------CccccccccCCCCccC-----------------------------CC
Q 017125          249 ---------------------VITIG-------AERFRCPEVLFQPSMI-----------------------------GM  271 (377)
Q Consensus       249 ---------------------~i~i~-------~~~~~~~E~lf~p~~~-----------------------------~~  271 (377)
                                           ..+++       ..|-..+|..-.+++.                             -.
T Consensus       418 fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~~~~~~  497 (618)
T KOG0797|consen  418 FDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMNKKGLYE  497 (618)
T ss_pred             cchhhhhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhhhcccceec
Confidence                                 00110       0111111111111100                             00


Q ss_pred             C----CCChHHHHHHHHhcC-ChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCC----ceEEEECCC---CCcc
Q 017125          272 E----SAGIHETTYNSIMKC-DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSS----MKIKVVAPP---ERKY  339 (377)
Q Consensus       272 ~----~~~l~~~I~~~i~~~-~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~----~~v~v~~~~---~~~~  339 (377)
                      .    ...+.+.|..+|..+ ..+.+++|.+.|.++||+...||+.+.|++.+....|..    ..|.|..+|   ||++
T Consensus       498 ~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~  577 (618)
T KOG0797|consen  498 SFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQF  577 (618)
T ss_pred             cccchhhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchh
Confidence            0    124556688888877 567899999999999999999999999999998766652    247777765   8999


Q ss_pred             ccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125          340 SVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF  377 (377)
Q Consensus       340 ~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~  377 (377)
                      -+|+||+|||.++.-.+.||++.||.-+|.++++.||.
T Consensus       578 VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~  615 (618)
T KOG0797|consen  578 VAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKY  615 (618)
T ss_pred             eEecchhhhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence            99999999999998899999999999999999999874

>PRK13930 rod shape-determining protein MreB; Provisional

Probab=100.00  E-value=1.3e-37  Score=292.57  Aligned_cols=307  Identities=18%  Similarity=0.246  Sum_probs=235.7

Q ss_pred             CEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhccc----CcceeeccccCCccCCHHHH
Q 017125            9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVNNWDDM   84 (377)
Q Consensus         9 ~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~~   84 (377)
                      .++||+||+++|+|+.++. +.+..||+++..+..       ++..++|+++.+..    ....+.+|+++|.+.||+..
T Consensus        10 ~vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~-------~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~   81 (335)
T PRK13930         10 DIGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKT-------GKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEAT   81 (335)
T ss_pred             ceEEEcCCCcEEEEECCCC-EEEecCCEEEEECCC-------CeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHH
Confidence            3999999999999998765 456689999876431       23468999987652    34678999999999999999


Q ss_pred             HHHHHHhcccccccC-CCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCC
Q 017125           85 EKIWHHTFYNELRVA-PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSG  158 (377)
Q Consensus        85 ~~~~~~~~~~~L~~~-~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG  158 (377)
                      +.+|++++.+.+... ....++++++|..++...|+.+.+ +||.+|++.++++++|+||++++|.     .+++|||+|
T Consensus        82 e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG  160 (335)
T PRK13930         82 EAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIG  160 (335)
T ss_pred             HHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeC
Confidence            999999994444432 336789999999999998887777 6799999999999999999999987     578999999


Q ss_pred             CCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHc-CCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCC
Q 017125          159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER-GYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSA  237 (377)
Q Consensus       159 ~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~-~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~  237 (377)
                      +++|+++++.+|.++  .....++||.++++++.+++.++ +...    ..+.++++|+++|++..+.+..  .... ..
T Consensus       161 ~gttdvs~v~~g~~~--~~~~~~lGG~~id~~l~~~l~~~~~~~~----~~~~ae~~K~~~~~~~~~~~~~--~~~~-~~  231 (335)
T PRK13930        161 GGTTEVAVISLGGIV--YSESIRVAGDEMDEAIVQYVRRKYNLLI----GERTAEEIKIEIGSAYPLDEEE--SMEV-RG  231 (335)
T ss_pred             CCeEEEEEEEeCCEE--eecCcCchhHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHhhcCcCCCCCc--eEEE-EC
Confidence            999999999999887  45678999999999999998754 2222    2367999999999886553211  0000 00


Q ss_pred             cceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcC-ceeccCCcCCcChHHHHH
Q 017125          238 VEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADRMS  316 (377)
Q Consensus       238 ~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~n-Ivl~GG~s~i~g~~~rl~  316 (377)
                      ....+.+|+  .+.++.+++  .|++|.+      ..++.+.|.++|.+++.+.+..+++| |+||||+|++|||.+||+
T Consensus       232 ~~~~~~~~~--~~~i~~~~~--~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~  301 (335)
T PRK13930        232 RDLVTGLPK--TIEISSEEV--REALAEP------LQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLS  301 (335)
T ss_pred             ccCCCCCCe--eEEECHHHH--HHHHHHH------HHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHH
Confidence            000111222  334444444  4777765      23588899999999999989899987 999999999999999999


Q ss_pred             HHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          317 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       317 ~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      +++.        +++....+|..++-.||++++.-
T Consensus       302 ~~~~--------~~v~~~~~p~~ava~Ga~~~~~~  328 (335)
T PRK13930        302 EETG--------LPVHIAEDPLTCVARGTGKALEN  328 (335)
T ss_pred             HHHC--------CCceecCCHHHHHHHHHHHHHhC
Confidence            9984        12333456788899999998754

>PRK13927 rod shape-determining protein MreB; Provisional

Probab=100.00  E-value=4.8e-36  Score=281.65  Aligned_cols=305  Identities=18%  Similarity=0.242  Sum_probs=229.0

Q ss_pred             CEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhccc----CcceeeccccCCccCCHHHH
Q 017125            9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVNNWDDM   84 (377)
Q Consensus         9 ~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~~   84 (377)
                      .|+||+||+++|+|+++++. .+.+||+++.+++.       ...+++|+++....    ....+.+|+++|.+.||+..
T Consensus         7 ~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~-------~~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~   78 (334)
T PRK13927          7 DLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDT-------KKVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDVT   78 (334)
T ss_pred             eeEEEcCcceEEEEECCCcE-EEecCCEEEEECCC-------CeEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHHH
Confidence            59999999999999998876 56899999987552       12468999987652    44678899999999999999


Q ss_pred             HHHHHHhcccccccCCCCC-cEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCC
Q 017125           85 EKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSG  158 (377)
Q Consensus        85 ~~~~~~~~~~~L~~~~~~~-~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG  158 (377)
                      +.+|++++.+.+.. +..+ .+++++|..++... ++.++.+|+.+|++.+.++++|+||++++|.     ++++|||+|
T Consensus        79 ~~ll~~~~~~~~~~-~~~~~~~vi~vP~~~~~~~-r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiG  156 (334)
T PRK13927         79 EKMLKYFIKKVHKN-FRPSPRVVICVPSGITEVE-RRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIG  156 (334)
T ss_pred             HHHHHHHHHHHhhc-cCCCCcEEEEeCCCCCHHH-HHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeC
Confidence            99999999776666 5545 57777776555544 4567788899999999999999999999986     467999999


Q ss_pred             CCceEEEEe-eCceecccceEEecccHHHHHHHHHHHHHHc-CCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCC
Q 017125          159 DGVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILTER-GYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISS  236 (377)
Q Consensus       159 ~~~t~v~~v-~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~-~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~  236 (377)
                      +++|+++++ .+|....+   ..++||+++|++|.+++.++ +...    +.+.++++|+++|++..+.+..  .... .
T Consensus       157 ggttdvs~v~~~~~~~~~---~~~lGG~~id~~l~~~l~~~~~~~~----~~~~ae~iK~~~~~~~~~~~~~--~~~~-~  226 (334)
T PRK13927        157 GGTTEVAVISLGGIVYSK---SVRVGGDKFDEAIINYVRRNYNLLI----GERTAERIKIEIGSAYPGDEVL--EMEV-R  226 (334)
T ss_pred             CCeEEEEEEecCCeEeeC---CcCChHHHHHHHHHHHHHHHhCcCc----CHHHHHHHHHHhhccCCCCCCc--eEEE-e
Confidence            999999999 66655433   35899999999999998643 2222    3457999999999875432100  0000 0


Q ss_pred             CcceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhc-CceeccCCcCCcChHHHH
Q 017125          237 AVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRM  315 (377)
Q Consensus       237 ~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~g~~~rl  315 (377)
                      .....+.+|+  .+.++.+++  .|++|.|      ..++.+.|.++|.+++.+.++.+++ +|+||||+|++||+.+||
T Consensus       227 ~~~~~~~~~~--~~~i~~~~~--~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l  296 (334)
T PRK13927        227 GRDLVTGLPK--TITISSNEI--REALQEP------LSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLL  296 (334)
T ss_pred             CcccCCCCCe--EEEECHHHH--HHHHHHH------HHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHH
Confidence            0000011121  344554544  3677665      2358899999999999888888887 599999999999999999


Q ss_pred             HHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          316 SKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       316 ~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      ++++.        +++....+|..++-.||++++.-
T Consensus       297 ~~~~~--------~~v~~~~~P~~ava~Ga~~~~~~  324 (334)
T PRK13927        297 SEETG--------LPVHVAEDPLTCVARGTGKALEN  324 (334)
T ss_pred             HHHHC--------CCcEecCCHHHHHHHHHHHHHhh
Confidence            99983        22334456789999999998754

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family

Probab=100.00  E-value=2.7e-35  Score=276.12  Aligned_cols=311  Identities=16%  Similarity=0.208  Sum_probs=232.3

Q ss_pred             EEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcc----cCcceeeccccCCccCCHHHHH
Q 017125           10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVNNWDDME   85 (377)
Q Consensus        10 viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~~~~~   85 (377)
                      |.||+||.++++-..++ .-.+..||+++..++.+   +....-++||++|...    .....+++|+++|.+.||+..+
T Consensus         5 ~giDlGt~~s~i~~~~~-~~~~~~psvv~~~~~~~---~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~   80 (333)
T TIGR00904         5 IGIDLGTANTLVYVKGR-GIVLNEPSVVAIRTDRD---AKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTE   80 (333)
T ss_pred             eEEecCcceEEEEECCC-CEEEecCCEEEEecCCC---CCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHH
Confidence            99999999999865432 23356788888764321   0012336799998876    2456789999999999999999


Q ss_pred             HHHHHhcccccccCCCC-CcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCC
Q 017125           86 KIWHHTFYNELRVAPEE-HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGD  159 (377)
Q Consensus        86 ~~~~~~~~~~L~~~~~~-~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~  159 (377)
                      ++|++++.+.+...... .++++++|+.++..+|+. ++.+|+.+|++.+.++++|+||++++|.     .+++|||+|+
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~  159 (333)
T TIGR00904        81 KMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGG  159 (333)
T ss_pred             HHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCC
Confidence            99999997666532222 369999999999999887 5557799999999999999999999987     6899999999


Q ss_pred             CceEEEEe-eCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCc
Q 017125          160 GVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAV  238 (377)
Q Consensus       160 ~~t~v~~v-~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~  238 (377)
                      ++|+++++ .+|....+   ..++||+++++.|.+++.++. ..  ....+.++++|+++|++..+..++... .. ...
T Consensus       160 gttdvs~v~~~~~~~~~---~~~lGG~did~~l~~~l~~~~-~~--~~~~~~ae~lK~~l~~~~~~~~~~~~~-~~-~~~  231 (333)
T TIGR00904       160 GTTEVAVISLGGIVVSR---SIRVGGDEFDEAIINYIRRTY-NL--LIGEQTAERIKIEIGSAYPLNDEPRKM-EV-RGR  231 (333)
T ss_pred             CeEEEEEEEeCCEEecC---CccchHHHHHHHHHHHHHHHh-cc--cCCHHHHHHHHHHHhccccccccccce-ee-cCc
Confidence            99999999 66665543   358999999999999886432 11  113467999999999876542111100 00 001


Q ss_pred             ceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhc-CceeccCCcCCcChHHHHHH
Q 017125          239 EKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMSK  317 (377)
Q Consensus       239 ~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~g~~~rl~~  317 (377)
                      ...+.+|++..+  +  +..+.|++|.|      ..++.+.|.+++++++.+.+..+++ +|+||||+|++|||.+||++
T Consensus       232 ~~~~~~~~~~~i--~--~~~~~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~  301 (333)
T TIGR00904       232 DLVTGLPRTIEI--T--SVEVREALQEP------VNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSK  301 (333)
T ss_pred             cccCCCCeEEEE--C--HHHHHHHHHHH------HHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHH
Confidence            122344554333  3  22566888877      2358888999999999988888886 89999999999999999999


Q ss_pred             HHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      ++.        +.+....+|..++-.||++++.-
T Consensus       302 ~~~--------~~v~~~~~P~~~va~Ga~~~~~~  327 (333)
T TIGR00904       302 ETG--------LPVIVADDPLLCVAKGTGKALED  327 (333)
T ss_pred             HHC--------CCceecCChHHHHHHHHHHHHhC
Confidence            993        23445567899999999998653

A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=100.00  E-value=1.1e-34  Score=271.37  Aligned_cols=302  Identities=18%  Similarity=0.323  Sum_probs=227.7

Q ss_pred             CEEEeCCCCceEEeeeCCCCCC-CCCCceeeeeCCCCccccCCCccceeccchhccc----CcceeeccccCCccCCHHH
Q 017125            9 PLVCDNGTGMVKAGFAGDDAPR-AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVNNWDD   83 (377)
Q Consensus         9 ~viiD~Gs~~~k~G~~~~~~P~-~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~   83 (377)
                      .+.||+||.++++ |.. ..+. ...||+++...+.       ..-.+||++|....    +...+.+|+++|.|.||+.
T Consensus         6 ~~giDlGt~~~~i-~~~-~~~~~~~~ps~va~~~~~-------~~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~   76 (335)
T PRK13929          6 EIGIDLGTANILV-YSK-NKGIILNEPSVVAVDTET-------KAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDM   76 (335)
T ss_pred             eEEEEcccccEEE-EEC-CCcEEecCCcEEEEECCC-------CeEEEeCHHHHHhhhcCCCcEEEEecCCCCccCCHHH
Confidence            5999999999998 332 2233 3468888764321       12357999998763    4466789999999999999


Q ss_pred             HHHHHHHhccc---ccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcC-----CceEEEE
Q 017125           84 MEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-----RTTGIVL  155 (377)
Q Consensus        84 ~~~~~~~~~~~---~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~~~lVV  155 (377)
                      .+.+|++++.+   .++..+...++++++|+.++..+|+.+.+ +++.+|++.+.++++|+||++++|     ..+++||
T Consensus        77 ~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvv  155 (335)
T PRK13929         77 TTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVV  155 (335)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEE
Confidence            99999999863   46665656789999999999999999999 779999999999999999999997     4589999


Q ss_pred             eCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccC
Q 017125          156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKIS  235 (377)
Q Consensus       156 DiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~  235 (377)
                      |+|+++|+++++..|..+  .....++||++++++|.+++.++ +.+..  +...+|++|+++|++..+.+++.  ... 
T Consensus       156 DiG~gtt~v~vi~~~~~~--~~~~~~~GG~~id~~l~~~l~~~-~~~~~--~~~~AE~iK~~l~~~~~~~~~~~--~~v-  227 (335)
T PRK13929        156 DIGGGTTEVAIISFGGVV--SCHSIRIGGDQLDEDIVSFVRKK-YNLLI--GERTAEQVKMEIGYALIEHEPET--MEV-  227 (335)
T ss_pred             EeCCCeEEEEEEEeCCEE--EecCcCCHHHHHHHHHHHHHHHH-hCcCc--CHHHHHHHHHHHcCCCCCCCCce--EEE-
Confidence            999999999999555444  23456899999999999998653 22221  34679999999998754421110  000 


Q ss_pred             CCcceEEEcCCCcEEecCCcccc--ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhc-CceeccCCcCCcChH
Q 017125          236 SAVEKSYELPDGQVITIGAERFR--CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIA  312 (377)
Q Consensus       236 ~~~~~~~~lpd~~~i~i~~~~~~--~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~g~~  312 (377)
                      ......+.+|  ..+.++.+++.  +.|.+|+          +.+.|.++|.+++.+.+..+++ +|+||||+|++|||.
T Consensus       228 ~g~~~~~~~p--~~i~i~~~~~~~~i~~~l~~----------i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~  295 (335)
T PRK13929        228 RGRDLVTGLP--KTITLESKEIQGAMRESLLH----------ILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIK  295 (335)
T ss_pred             eCCccCCCCC--eEEEEcHHHHHHHHHHHHHH----------HHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHH
Confidence            0000011122  34566666665  4555543          8899999999999999989998 799999999999999


Q ss_pred             HHHHHHHHhhCCCCceEEEECCCCCccccchhhhhh
Q 017125          313 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL  348 (377)
Q Consensus       313 ~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~  348 (377)
                      +++++++.-        .+....+|..++-.|+..+
T Consensus       296 e~l~~~~~~--------~v~~~~~P~~~Va~Ga~~~  323 (335)
T PRK13929        296 EWLSEEIVV--------PVHVAANPLESVAIGTGRS  323 (335)
T ss_pred             HHHHHHHCC--------CceeCCCHHHHHHHHHHHH
Confidence            999999942        2333567889999998776

>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes

Probab=100.00  E-value=7.1e-33  Score=253.66  Aligned_cols=305  Identities=18%  Similarity=0.277  Sum_probs=218.0

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcc----cCcceeeccccCCccCCHHH
Q 017125            8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVNNWDD   83 (377)
Q Consensus         8 ~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~~~   83 (377)
                      +-+.||+||.+|++ |..+..=.+..||+++..+..       ..-..+|++|...    .....+.+|+++|.|.|++.
T Consensus         2 ~~igIDLGT~~t~i-~~~~~Giv~~epSvVA~~~~~-------~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~   73 (326)
T PF06723_consen    2 KDIGIDLGTSNTRI-YVKGKGIVLNEPSVVAYDKDT-------GKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEA   73 (326)
T ss_dssp             SEEEEEE-SSEEEE-EETTTEEEEEEES-EEEETTT---------EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHH
T ss_pred             CceEEecCcccEEE-EECCCCEEEecCcEEEEECCC-------CeEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHH
Confidence            46899999999999 444444344568888877653       2335689999775    34578999999999999999


Q ss_pred             HHHHHHHhccccccc-CCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeC
Q 017125           84 MEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDS  157 (377)
Q Consensus        84 ~~~~~~~~~~~~L~~-~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDi  157 (377)
                      .+.++++++.+.++. ......++++.|...+..+|+.+.+.+ ..+|+..|+++++|+||++++|.     ...+||||
T Consensus        74 ~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~-~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDI  152 (326)
T PF06723_consen   74 AEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAA-RQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDI  152 (326)
T ss_dssp             HHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHH-HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE
T ss_pred             HHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEE
Confidence            999999999666664 345667999999999999999999999 56999999999999999999985     47899999


Q ss_pred             CCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCC
Q 017125          158 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSA  237 (377)
Q Consensus       158 G~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~  237 (377)
                      |+++|+++.+..|.++  ..+.+++||+++++.+.+++++++ ++.  ....++|++|.+++++....++.  ....   
T Consensus       153 G~GtTdiavislggiv--~s~si~~gG~~~DeaI~~~ir~~y-~l~--Ig~~tAE~iK~~~g~~~~~~~~~--~~~v---  222 (326)
T PF06723_consen  153 GGGTTDIAVISLGGIV--ASRSIRIGGDDIDEAIIRYIREKY-NLL--IGERTAEKIKIEIGSASPPEEEE--SMEV---  222 (326)
T ss_dssp             -SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHHHHHH-SEE----HHHHHHHHHHH-BSS--HHHH--EEEE---
T ss_pred             CCCeEEEEEEECCCEE--EEEEEEecCcchhHHHHHHHHHhh-Ccc--cCHHHHHHHHHhcceeeccCCCc--eEEE---
Confidence            9999999999999998  678889999999999999998654 221  24578999999999886433221  1100   


Q ss_pred             cceEEEcCCCc--EEecC-CccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhc-CceeccCCcCCcChHH
Q 017125          238 VEKSYELPDGQ--VITIG-AERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIAD  313 (377)
Q Consensus       238 ~~~~~~lpd~~--~i~i~-~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~g~~~  313 (377)
                        .--.+-+|.  .+.++ .+-..+.+..+.+         +.+.|.+++.++|+++...+++ +|+||||+|+++||.+
T Consensus       223 --~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~---------I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~  291 (326)
T PF06723_consen  223 --RGRDLITGLPKSIEITSSEVREAIEPPVDQ---------IVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDE  291 (326)
T ss_dssp             --EEEETTTTCEEEEEEEHHHHHHHHHHHHHH---------HHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHH
T ss_pred             --ECccccCCCcEEEEEcHHHHHHHHHHHHHH---------HHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHH
Confidence              001122222  22222 1333344444444         8999999999999999988775 5999999999999999


Q ss_pred             HHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017125          314 RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       314 rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      +|++++        .++|...++|.+++-.|+..+..
T Consensus       292 ~i~~~~--------~~pV~va~~P~~~va~G~~~~l~  320 (326)
T PF06723_consen  292 YISEET--------GVPVRVADDPLTAVARGAGKLLE  320 (326)
T ss_dssp             HHHHHH--------SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred             HHHHHH--------CCCEEEcCCHHHHHHHHHHHHHh
Confidence            999999        34566677889999999877654

In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.

>PRK13928 rod shape-determining protein Mbl; Provisional

Probab=99.98  E-value=1.5e-31  Score=250.95  Aligned_cols=306  Identities=18%  Similarity=0.275  Sum_probs=219.6

Q ss_pred             EEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhccc----CcceeeccccCCccCCHHHHH
Q 017125           10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVNNWDDME   85 (377)
Q Consensus        10 viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~~~   85 (377)
                      +.||+||.++++... +..-.+..||+++...+.       +.-..+|++|.+..    ....+.+|+++|.+.||+..+
T Consensus         6 ~gIDlGt~~~~i~~~-~~~~v~~~psvv~~~~~~-------~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~   77 (336)
T PRK13928          6 IGIDLGTANVLVYVK-GKGIVLNEPSVVAIDKNT-------NKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTE   77 (336)
T ss_pred             eEEEcccccEEEEEC-CCCEEEccCCEEEEECCC-------CeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHH
Confidence            999999999999655 333334578888765332       12357899987662    345677999999999999999


Q ss_pred             HHHHHhcccccccC-CCCCc-EEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCC
Q 017125           86 KIWHHTFYNELRVA-PEEHP-VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSG  158 (377)
Q Consensus        86 ~~~~~~~~~~L~~~-~~~~~-vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG  158 (377)
                      .+|++++ +.+... ...+| +++++|..++...|+ .++.+++.+|++.+.++++|+||++++|.     .+++|||+|
T Consensus        78 ~~l~~~~-~~~~~~~~~~~p~~vitvP~~~~~~~r~-~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiG  155 (336)
T PRK13928         78 KMLKYFI-NKACGKRFFSKPRIMICIPTGITSVEKR-AVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIG  155 (336)
T ss_pred             HHHHHHH-HHHhccCCCCCCeEEEEeCCCCCHHHHH-HHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeC
Confidence            9999998 444332 34566 888998777766555 55566699999999999999999999986     679999999


Q ss_pred             CCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCc
Q 017125          159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAV  238 (377)
Q Consensus       159 ~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~  238 (377)
                      +++|+++++..|..+.  ....++||+++|+.+.+++.++. .+.  .....++++|++++.+..+..+.  .... ...
T Consensus       156 ggttdvsvv~~g~~~~--~~~~~lGG~did~~i~~~l~~~~-~~~--~~~~~ae~lK~~~~~~~~~~~~~--~~~v-~g~  227 (336)
T PRK13928        156 GGTTDIAVLSLGGIVT--SSSIKVAGDKFDEAIIRYIRKKY-KLL--IGERTAEEIKIKIGTAFPGAREE--EMEI-RGR  227 (336)
T ss_pred             CCeEEEEEEEeCCEEE--eCCcCCHHHHHHHHHHHHHHHHh-chh--cCHHHHHHHHHHhcccccccCCc--EEEE-ecc
Confidence            9999999999997774  34679999999999999986432 111  12356999999988764331100  0000 000


Q ss_pred             ceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhc-CceeccCCcCCcChHHHHHH
Q 017125          239 EKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMSK  317 (377)
Q Consensus       239 ~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~g~~~rl~~  317 (377)
                      .....+|.  .+.++.+++.  |+++.+      ...+.+.|.+++.+++.+.+...++ +|+||||+|++||+.++|++
T Consensus       228 ~~~~~~~~--~~~i~~~~~~--eii~~~------~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~  297 (336)
T PRK13928        228 DLVTGLPK--TITVTSEEIR--EALKEP------VSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAE  297 (336)
T ss_pred             cccCCCce--EEEECHHHHH--HHHHHH------HHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHH
Confidence            00001111  2334433333  444433      1237888899999998888888887 79999999999999999999


Q ss_pred             HHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      ++..        .+....+|..++-.||++++.-
T Consensus       298 ~~~~--------~v~~~~~P~~ava~Gaa~~~~~  323 (336)
T PRK13928        298 ETKV--------PVYIAEDPISCVALGTGKMLEN  323 (336)
T ss_pred             HHCC--------CceecCCHHHHHHHHHHHHHhc
Confidence            9942        2333457899999999998643

>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]

Probab=99.94  E-value=7.2e-26  Score=199.96  Aligned_cols=313  Identities=18%  Similarity=0.229  Sum_probs=226.2

Q ss_pred             CCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcc----cCcceeeccccCCccCCHH
Q 017125            7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVNNWD   82 (377)
Q Consensus         7 ~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~~   82 (377)
                      .+.+.||+||.+|++- .-+..=-...||+++......     ...-..||++|..+    .+.....+|+++|+|.|++
T Consensus         6 s~diGIDLGTanTlV~-~k~kgIVl~ePSVVAi~~~~~-----~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~   79 (342)
T COG1077           6 SNDIGIDLGTANTLVY-VKGKGIVLNEPSVVAIESEGK-----TKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFE   79 (342)
T ss_pred             cccceeeecccceEEE-EcCceEEecCceEEEEeecCC-----CceEEEehHHHHHHhccCCCCceEEeecCCcEeecHH
Confidence            3589999999999994 333333456688887765311     12346799999886    3456789999999999999


Q ss_pred             HHHHHHHHhcccccccC--CCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEE
Q 017125           83 DMEKIWHHTFYNELRVA--PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVL  155 (377)
Q Consensus        83 ~~~~~~~~~~~~~L~~~--~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVV  155 (377)
                      ..+.+++|.+++...-.  +..-.++++.|.-.....|+.+.+.+ ++.|...|+++++|.+|+++.|.     +...||
T Consensus        80 ~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvv  158 (342)
T COG1077          80 VTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVV  158 (342)
T ss_pred             HHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHHhcCCCcccCCCCCEEE
Confidence            99999999875444222  23445999999999999999999988 77999999999999999999985     458999


Q ss_pred             eCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccC
Q 017125          156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKIS  235 (377)
Q Consensus       156 DiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~  235 (377)
                      |||+++|.|..+..|-++  ...+..+||+.+++.+..++++++--..   ....++++|.+.+++..+...+..+... 
T Consensus       159 DIGgGTTevaVISlggiv--~~~Sirv~GD~~De~Ii~yvr~~~nl~I---Ge~taE~iK~eiG~a~~~~~~~~~~~eV-  232 (342)
T COG1077         159 DIGGGTTEVAVISLGGIV--SSSSVRVGGDKMDEAIIVYVRKKYNLLI---GERTAEKIKIEIGSAYPEEEDEELEMEV-  232 (342)
T ss_pred             EeCCCceeEEEEEecCEE--EEeeEEEecchhhHHHHHHHHHHhCeee---cHHHHHHHHHHhcccccccCCccceeeE-
Confidence            999999999999988888  5677899999999999999976532222   3456999999999987642211000000 


Q ss_pred             CCcceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcC-ceeccCCcCCcChHHH
Q 017125          236 SAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADR  314 (377)
Q Consensus       236 ~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~n-Ivl~GG~s~i~g~~~r  314 (377)
                      .......-+|.  .+.++.+.  +.|.|-.+      ...|.+.|...+.++|.++-...+++ |++|||+|++.||.+.
T Consensus       233 ~Grdl~~GlPk--~i~i~s~e--v~eal~~~------v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~  302 (342)
T COG1077         233 RGRDLVTGLPK--TITINSEE--IAEALEEP------LNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRL  302 (342)
T ss_pred             EeeecccCCCe--eEEEcHHH--HHHHHHHH------HHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHh
Confidence            00000001111  11222111  11222111      23488888899999999999999988 9999999999999999


Q ss_pred             HHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017125          315 MSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       315 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      +.++.        .+.+.-.++|-..+-+|+.....
T Consensus       303 i~~et--------~~pv~ia~~pL~~Va~G~G~~le  330 (342)
T COG1077         303 LSEET--------GVPVIIADDPLTCVAKGTGKALE  330 (342)
T ss_pred             HHhcc--------CCeEEECCChHHHHHhccchhhh
Confidence            99887        45666677787777777655433

>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein

Probab=99.88  E-value=1.9e-21  Score=172.94  Aligned_cols=208  Identities=16%  Similarity=0.188  Sum_probs=159.1

Q ss_pred             eccccCCccCCHHHHHHHHHHhccc---ccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhh
Q 017125           70 KYPIEHGIVNNWDDMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA  146 (377)
Q Consensus        70 ~~p~~~g~i~d~~~~~~~~~~~~~~---~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~  146 (377)
                      ..|+.+|.|.|++..+++++++...   .++  ..-..+++++|..++..+|+.+.+.+ +..|++.+.++++|+|++.+
T Consensus        28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g--~~~~~vvisVP~~~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aaa~~  104 (239)
T TIGR02529        28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLG--IELTHAATAIPPGTIEGDPKVIVNVI-ESAGIEVLHVLDEPTAAAAV  104 (239)
T ss_pred             cccccCCeEEEhHHHHHHHHHHHHHHHHHhC--CCcCcEEEEECCCCCcccHHHHHHHH-HHcCCceEEEeehHHHHHHH
Confidence            5789999999999999999999732   232  33468999999999999998877766 78999999999999999999


Q ss_pred             cCCceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHH
Q 017125          147 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYE  226 (377)
Q Consensus       147 ~g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~  226 (377)
                      ++....+|+|+|+++|+++.+.+|.++  .....++||+++++.+.+.+.   .      +.+.+|.+|.+++.    . 
T Consensus       105 ~~~~~~~vvDiGggtt~i~i~~~G~i~--~~~~~~~GG~~it~~Ia~~~~---i------~~~~AE~~K~~~~~----~-  168 (239)
T TIGR02529       105 LQIKNGAVVDVGGGTTGISILKKGKVI--YSADEPTGGTHMSLVLAGAYG---I------SFEEAEEYKRGHKD----E-  168 (239)
T ss_pred             hcCCCcEEEEeCCCcEEEEEEECCeEE--EEEeeecchHHHHHHHHHHhC---C------CHHHHHHHHHhcCC----H-
Confidence            888788999999999999999999888  567789999999999876662   2      34668889887552    1 


Q ss_pred             HHHHHhccCCCcceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCc
Q 017125          227 QELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGST  306 (377)
Q Consensus       227 ~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s  306 (377)
                      ++..                           ...+.+.         ..+.+.|.+.+.+.+.       +.|+||||+|
T Consensus       169 ~~~~---------------------------~~i~~~~---------~~i~~~i~~~l~~~~~-------~~v~LtGG~a  205 (239)
T TIGR02529       169 EEIF---------------------------PVVKPVY---------QKMASIVKRHIEGQGV-------KDLYLVGGAC  205 (239)
T ss_pred             HHHH---------------------------HHHHHHH---------HHHHHHHHHHHHhCCC-------CEEEEECchh
Confidence            1100                           0001111         1144555555554443       4799999999


Q ss_pred             CCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhh
Q 017125          307 MFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSI  347 (377)
Q Consensus       307 ~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi  347 (377)
                      ++||+.+.|++.+.        +.+..+.+|.+++-.|+++
T Consensus       206 ~ipgl~e~l~~~lg--------~~v~~~~~P~~~va~Gaa~  238 (239)
T TIGR02529       206 SFSGFADVFEKQLG--------LNVIKPQHPLYVTPLGIAM  238 (239)
T ss_pred             cchhHHHHHHHHhC--------CCcccCCCCCeehhheeec
Confidence            99999999999883        2334467889999999865

>PRK15080 ethanolamine utilization protein EutJ; Provisional

Probab=99.85  E-value=8.5e-20  Score=165.14  Aligned_cols=243  Identities=15%  Similarity=0.138  Sum_probs=174.0

Q ss_pred             CCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHHH
Q 017125            5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDM   84 (377)
Q Consensus         5 ~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~   84 (377)
                      .....++||+||+++|+=.. +..+.     .++                 +|+         ....+++.|.+.|++..
T Consensus        22 ~~~~~~~iDiGSssi~~vv~-~~~~~-----~~~-----------------~~~---------~~~~~vr~G~i~di~~a   69 (267)
T PRK15080         22 ESPLKVGVDLGTANIVLAVL-DEDGQ-----PVA-----------------GAL---------EWADVVRDGIVVDFIGA   69 (267)
T ss_pred             CCCEEEEEEccCceEEEEEE-cCCCC-----EEE-----------------EEe---------ccccccCCCEEeeHHHH
Confidence            35567999999999997554 32222     111                 221         23567899999999999


Q ss_pred             HHHHHHhccc---ccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCc
Q 017125           85 EKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV  161 (377)
Q Consensus        85 ~~~~~~~~~~---~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~  161 (377)
                      .+.++++...   .++..  -..++++.|......++..+.+.+ +..|++...++.+|.+++.+++...++|||||+++
T Consensus        70 ~~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~~~~-~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggt  146 (267)
T PRK15080         70 VTIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAIINVV-ESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGT  146 (267)
T ss_pred             HHHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHHHHH-HHcCCceEEEechHHHHHHHhCCCCcEEEEeCCCc
Confidence            8888888631   33433  356788899988777788777555 88999999999999999998887778999999999


Q ss_pred             eEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceE
Q 017125          162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKS  241 (377)
Q Consensus       162 t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~  241 (377)
                      |+++.+.+|.++  .....++||+++++.+.+.+.   .      ..+.+|.+|.+...     .++..           
T Consensus       147 t~i~v~~~g~~~--~~~~~~~GG~~it~~Ia~~l~---i------~~~eAE~lK~~~~~-----~~~~~-----------  199 (267)
T PRK15080        147 TGISILKDGKVV--YSADEPTGGTHMSLVLAGAYG---I------SFEEAEQYKRDPKH-----HKEIF-----------  199 (267)
T ss_pred             EEEEEEECCeEE--EEecccCchHHHHHHHHHHhC---C------CHHHHHHHHhccCC-----HHHHH-----------
Confidence            999999999887  456789999999999987762   2      34568888876431     00000           


Q ss_pred             EEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHh
Q 017125          242 YELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITA  321 (377)
Q Consensus       242 ~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~  321 (377)
                                      .+.+.+++.         +.+.|.+.+.+.       -.+.|+||||+|++||+.+.+++.+..
T Consensus       200 ----------------~ii~~~~~~---------i~~~i~~~l~~~-------~~~~IvLtGG~s~lpgl~e~l~~~lg~  247 (267)
T PRK15080        200 ----------------PVVKPVVEK---------MASIVARHIEGQ-------DVEDIYLVGGTCCLPGFEEVFEKQTGL  247 (267)
T ss_pred             ----------------HHHHHHHHH---------HHHHHHHHHhcC-------CCCEEEEECCcccchhHHHHHHHHhCC
Confidence                            000111111         334444444433       346899999999999999999999832


Q ss_pred             hCCCCceEEEECCCCCccccchhhhhhh
Q 017125          322 LAPSSMKIKVVAPPERKYSVWIGGSILA  349 (377)
Q Consensus       322 ~~~~~~~v~v~~~~~~~~~~w~Gasi~a  349 (377)
                            +  +..+++|.+++-.|+.+|+
T Consensus       248 ------~--v~~~~~P~~~~a~Gaa~~~  267 (267)
T PRK15080        248 ------P--VHKPQHPLFVTPLGIALSC  267 (267)
T ss_pred             ------C--cccCCCchHHHHHHHHhhC
Confidence                  2  2336788999999998874

>CHL00094 dnaK heat shock protein 70

Probab=99.81  E-value=2e-19  Score=181.28  Aligned_cols=297  Identities=19%  Similarity=0.214  Sum_probs=179.3

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCC--------CCCCceeeeeCCCCccccCCCccceeccchhcc------cCcceeec--
Q 017125            8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKY--   71 (377)
Q Consensus         8 ~~viiD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~--   71 (377)
                      ..|.||+||+++++++..+..|.        ..+||+++...         ....+||+.|...      +....+++  
T Consensus         3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~---------~~~~~vG~~A~~~~~~~p~~ti~~~Krli   73 (621)
T CHL00094          3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTK---------KGDLLVGQIAKRQAVINPENTFYSVKRFI   73 (621)
T ss_pred             ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcC---------CCCEEECHHHHHhHHhCccceehhhHHhc
Confidence            58999999999999998665554        23455554422         2234566554431      00011111  


Q ss_pred             --------------cc----------------cCCccCCHHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhH
Q 017125           72 --------------PI----------------EHGIVNNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR  118 (377)
Q Consensus        72 --------------p~----------------~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~  118 (377)
                                    |+                ....+...+....+++++..   ..++.  .-..+++++|..++..+|
T Consensus        74 G~~~~~~~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~--~v~~~VItVPa~f~~~qR  151 (621)
T CHL00094         74 GRKFSEISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGE--TVTQAVITVPAYFNDSQR  151 (621)
T ss_pred             CCChHHHHhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHH
Confidence                          11                11112233445556655532   22332  235699999999999999


Q ss_pred             HHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCcee---cccceEEecccHHHHHHH
Q 017125          119 EKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYA---LPHAILRLDLAGRDLTDA  190 (377)
Q Consensus       119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~---~~~~~~~~~~GG~~i~~~  190 (377)
                      +.+.+.+ +..|++.+.++++|+||++++|.     .+.+|+|+|+++++|+.+..+..   +..+....++||.++++.
T Consensus       152 ~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~  230 (621)
T CHL00094        152 QATKDAG-KIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKK  230 (621)
T ss_pred             HHHHHHH-HHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHH
Confidence            9888777 78999999999999999999874     46899999999999998864422   122233568999999999


Q ss_pred             HHHHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCC------C-cEE--e
Q 017125          191 LMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPD------G-QVI--T  251 (377)
Q Consensus       191 l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd------~-~~i--~  251 (377)
                      |.+++.++     +.++.....     ...++.+|..++...                ...+.+|.      | ..+  .
T Consensus       231 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~  294 (621)
T CHL00094        231 IVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLT----------------QTEINLPFITATQTGPKHIEKT  294 (621)
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCC----------------ceEEEEeecccCCCCCeeEEEE
Confidence            99877542     222221111     134566666655211                11122210      1 112  2


Q ss_pred             cCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEE
Q 017125          252 IGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIK  330 (377)
Q Consensus       252 i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~  330 (377)
                      +..++|. ..+.++..         +.+.|.+++.+.  .+...-++.|+|+||+|++|++.+.+++.+..        .
T Consensus       295 itR~~fe~l~~~l~~~---------~~~~i~~~L~~a--~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~--------~  355 (621)
T CHL00094        295 LTRAKFEELCSDLINR---------CRIPVENALKDA--KLDKSDIDEVVLVGGSTRIPAIQELVKKLLGK--------K  355 (621)
T ss_pred             EcHHHHHHHHHHHHHH---------HHHHHHHHHHHc--CCChhhCcEEEEECCccCChHHHHHHHHHhCC--------C
Confidence            2222221 11111111         333344444433  23344568999999999999999998877632        1


Q ss_pred             EECCCCCccccchhhhhhhcc
Q 017125          331 VVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       331 v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      +....+|+.++..||+++|..
T Consensus       356 ~~~~~~pdeava~GAA~~aa~  376 (621)
T CHL00094        356 PNQSVNPDEVVAIGAAVQAGV  376 (621)
T ss_pred             cCcCCCchhHHHhhhHHHHHH
Confidence            233457789999999999875

>PTZ00400 DnaK-type molecular chaperone; Provisional

Probab=99.81  E-value=4.4e-19  Score=179.52  Aligned_cols=216  Identities=18%  Similarity=0.232  Sum_probs=142.1

Q ss_pred             CCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--Ccee-c
Q 017125          102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-L  173 (377)
Q Consensus       102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~  173 (377)
                      -..++|++|..++..+|+.+.+.+ +..|++.+.++++|.||++++|.     .+.+|+|+|+++++|+.+.  +|.. +
T Consensus       174 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v  252 (663)
T PTZ00400        174 VKQAVITVPAYFNDSQRQATKDAG-KIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEV  252 (663)
T ss_pred             CceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEE
Confidence            367999999999999999888777 88999999999999999999975     4789999999999999774  5533 2


Q ss_pred             ccceEEecccHHHHHHHHHHHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEE
Q 017125          174 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYE  243 (377)
Q Consensus       174 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~  243 (377)
                      ..+.....+||.++++.|.+++..+     +.++.....     ...++..|+.++.-.              .....+.
T Consensus       253 ~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~--------------~~~i~i~  318 (663)
T PTZ00400        253 KATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKT--------------QTEINLP  318 (663)
T ss_pred             EecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCC--------------ceEEEEE
Confidence            2233456899999999999887643     222221100     123555565554210              0111111


Q ss_pred             --cCC--C-c--EEecCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHH
Q 017125          244 --LPD--G-Q--VITIGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRM  315 (377)
Q Consensus       244 --lpd--~-~--~i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl  315 (377)
                        ..|  | .  .+.++.+.|. ..+.+|..         +.+.|.+++.+..  +.+.-++.|+|+||+|++|++.+.+
T Consensus       319 ~~~~d~~g~~~~~~~itR~efe~l~~~l~~~---------~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l  387 (663)
T PTZ00400        319 FITADQSGPKHLQIKLSRAKLEELTHDLLKK---------TIEPCEKCIKDAG--VKKDELNDVILVGGMTRMPKVSETV  387 (663)
T ss_pred             eeccCCCCceEEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CCHHHCcEEEEECCccCChHHHHHH
Confidence              111  1 1  2333333331 22223222         4455555555442  2344578999999999999999888


Q ss_pred             HHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          316 SKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       316 ~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      ++.+..        .+....+|+.++-.||+++|..
T Consensus       388 ~~~f~~--------~~~~~~npdeaVA~GAAi~aa~  415 (663)
T PTZ00400        388 KKIFGK--------EPSKGVNPDEAVAMGAAIQAGV  415 (663)
T ss_pred             HHHhCC--------CcccCCCCccceeeccHHHHHh
Confidence            877632        1233457889999999999865

>TIGR01991 HscA Fe-S protein assembly chaperone HscA

Probab=99.80  E-value=4.2e-19  Score=177.98  Aligned_cols=297  Identities=21%  Similarity=0.221  Sum_probs=180.9

Q ss_pred             CEEEeCCCCceEEeeeCCCCCC--------CCCCceeeeeCCCCccccCCCccceeccchhccc------Ccceee----
Q 017125            9 PLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR------GILTLK----   70 (377)
Q Consensus         9 ~viiD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~------~~~~~~----   70 (377)
                      +|.||+||+++.+++..+..|.        ..+||+++...+         ....||..|....      ....++    
T Consensus         1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~---------~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG   71 (599)
T TIGR01991         1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKD---------GGVEVGKEALAAAAEDPKNTISSVKRLMG   71 (599)
T ss_pred             CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCC---------CCEEecHHHHHhhhhChhhhHHHHHHHhC
Confidence            4789999999999987655443        245666655322         2456676654320      000001    


Q ss_pred             -----------ccc--------------cCCccCCHHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhHHHHH
Q 017125           71 -----------YPI--------------EHGIVNNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMT  122 (377)
Q Consensus        71 -----------~p~--------------~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~l~  122 (377)
                                 +|+              ..+.+...+....+++++..   ..++..  -..++|++|..++..+|+.+.
T Consensus        72 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~--v~~~VItVPa~f~~~qR~a~~  149 (599)
T TIGR01991        72 RSIEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGD--LVGAVITVPAYFDDAQRQATK  149 (599)
T ss_pred             CCccchhhcccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCC--cceEEEEECCCCCHHHHHHHH
Confidence                       122              11222233444555555531   234322  357999999999999999988


Q ss_pred             hhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--Ccee-cccceEEecccHHHHHHHHHHH
Q 017125          123 QIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKI  194 (377)
Q Consensus       123 ~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~~~~~~~~~~GG~~i~~~l~~~  194 (377)
                      +.+ +.+|++.+.++++|.||+++++.     .+.+|+|+|+++++|+.+.  +|.. +..+.....+||.++++.|.++
T Consensus       150 ~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~  228 (599)
T TIGR01991       150 DAA-RLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKW  228 (599)
T ss_pred             HHH-HHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHH
Confidence            777 88999999999999999998863     4689999999999999775  3422 2222234589999999999999


Q ss_pred             HHHc-CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEE--ecCCcccc-ccccCCC
Q 017125          195 LTER-GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVI--TIGAERFR-CPEVLFQ  265 (377)
Q Consensus       195 l~~~-~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i--~i~~~~~~-~~E~lf~  265 (377)
                      +.++ +.+......     ...++..|+.++.-              ......+.. +|..+  .++.+.|. ..+.++.
T Consensus       229 l~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~--------------~~~~i~i~~-~g~~~~~~itr~efe~l~~~ll~  293 (599)
T TIGR01991       229 ILKQLGISADLNPEDQRLLLQAARAAKEALTDA--------------ESVEVDFTL-DGKDFKGKLTRDEFEALIQPLVQ  293 (599)
T ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHHHhCCCC--------------ceEEEEEEE-CCcEEEEEEeHHHHHHHHHHHHH
Confidence            8654 333211111     12244445444321              111222222 23333  23333221 1222222


Q ss_pred             CccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhh
Q 017125          266 PSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGG  345 (377)
Q Consensus       266 p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Ga  345 (377)
                      .         +.+.|.+++....  +...-++.|+|+||+|++|++.+++++.+..        .+....+|+.++-.||
T Consensus       294 ~---------i~~~i~~~L~~a~--~~~~~id~ViLvGGssriP~V~~~l~~~f~~--------~~~~~~npdeaVA~GA  354 (599)
T TIGR01991       294 K---------TLSICRRALRDAG--LSVEEIKGVVLVGGSTRMPLVRRAVAELFGQ--------EPLTDIDPDQVVALGA  354 (599)
T ss_pred             H---------HHHHHHHHHHHcC--CChhhCCEEEEECCcCCChHHHHHHHHHhCC--------CCCCCCCCcHHHHHHH
Confidence            1         3444445554332  2344568899999999999999998877632        1233567899999999


Q ss_pred             hhhhcc
Q 017125          346 SILASL  351 (377)
Q Consensus       346 si~a~l  351 (377)
                      +++|..
T Consensus       355 ai~a~~  360 (599)
T TIGR01991       355 AIQADL  360 (599)
T ss_pred             HHHHHH
Confidence            999875

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.

>PLN03184 chloroplast Hsp70; Provisional

Probab=99.79  E-value=9.6e-19  Score=177.14  Aligned_cols=297  Identities=17%  Similarity=0.207  Sum_probs=179.6

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCC--------CCCCceeeeeCCCCccccCCCccceeccchhcc------cCcceee---
Q 017125            8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLK---   70 (377)
Q Consensus         8 ~~viiD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~---   70 (377)
                      .+|.||+||+++++++..+..|.        ..+||+++...         ....+||+.|...      +....++   
T Consensus        40 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~---------~~~~~vG~~A~~~~~~~p~~ti~~~Krli  110 (673)
T PLN03184         40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK---------NGDRLVGQIAKRQAVVNPENTFFSVKRFI  110 (673)
T ss_pred             CEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcC---------CCCEEECHHHHHhhhhCchhhhHHHHHhh
Confidence            57999999999999998665554        23455554422         2234566655432      0000011   


Q ss_pred             -------------ccc----------------cCCccCCHHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhH
Q 017125           71 -------------YPI----------------EHGIVNNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR  118 (377)
Q Consensus        71 -------------~p~----------------~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~  118 (377)
                                   +|+                ....+...+....+|+++..   ..++  ..-..++|++|..++..+|
T Consensus       111 G~~~~d~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg--~~v~~~VITVPa~f~~~qR  188 (673)
T PLN03184        111 GRKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLN--DKVTKAVITVPAYFNDSQR  188 (673)
T ss_pred             CCCcchhhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHH
Confidence                         111                11122233445566666542   2233  2236799999999999999


Q ss_pred             HHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCcee---cccceEEecccHHHHHHH
Q 017125          119 EKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYA---LPHAILRLDLAGRDLTDA  190 (377)
Q Consensus       119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~---~~~~~~~~~~GG~~i~~~  190 (377)
                      +.+.+.+ +..|++.+.++++|+||++++|.     .+.+|+|+|+++++|+.+.-+..   +..+....++||.++++.
T Consensus       189 ~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~  267 (673)
T PLN03184        189 TATKDAG-RIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR  267 (673)
T ss_pred             HHHHHHH-HHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHH
Confidence            9887766 88999999999999999998864     47899999999999987753321   122223468999999999


Q ss_pred             HHHHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcC------CC-cEE--e
Q 017125          191 LMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELP------DG-QVI--T  251 (377)
Q Consensus       191 l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp------d~-~~i--~  251 (377)
                      |.+++..+     +.+......     ...++..|+.++...                ...+.++      ++ ..+  .
T Consensus       268 L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~  331 (673)
T PLN03184        268 IVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLT----------------QTSISLPFITATADGPKHIDTT  331 (673)
T ss_pred             HHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCC----------------cceEEEEeeeccCCCCceEEEE
Confidence            99887542     222211111     223555565554311                1111111      11 222  2


Q ss_pred             cCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEE
Q 017125          252 IGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIK  330 (377)
Q Consensus       252 i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~  330 (377)
                      +..+.|. ..+.+++.         +.+.|.+++.....  ...-++.|+|+||+|++|.+.+++++.+..        .
T Consensus       332 itR~~fe~l~~~l~~r---------~~~~i~~~L~~a~~--~~~dId~ViLvGGssriP~V~~~i~~~fg~--------~  392 (673)
T PLN03184        332 LTRAKFEELCSDLLDR---------CKTPVENALRDAKL--SFKDIDEVILVGGSTRIPAVQELVKKLTGK--------D  392 (673)
T ss_pred             ECHHHHHHHHHHHHHH---------HHHHHHHHHHHcCC--ChhHccEEEEECCccccHHHHHHHHHHhCC--------C
Confidence            3333322 12222222         44445555544432  234458999999999999999988877632        1


Q ss_pred             EECCCCCccccchhhhhhhcc
Q 017125          331 VVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       331 v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      +....+|+.++-.||+++|..
T Consensus       393 ~~~~~npdeaVA~GAAi~aa~  413 (673)
T PLN03184        393 PNVTVNPDEVVALGAAVQAGV  413 (673)
T ss_pred             cccccCcchHHHHHHHHHHHH
Confidence            223346789999999999874

>TIGR02350 prok_dnaK chaperone protein DnaK

Probab=99.79  E-value=5.7e-19  Score=177.90  Aligned_cols=296  Identities=18%  Similarity=0.236  Sum_probs=177.7

Q ss_pred             CEEEeCCCCceEEeeeCCCCCC--------CCCCceeeeeCCCCccccCCCccceeccchhccc------Ccceeec---
Q 017125            9 PLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR------GILTLKY---   71 (377)
Q Consensus         9 ~viiD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~------~~~~~~~---   71 (377)
                      +|.||+||+++++++..+..|.        ..+||+++...         +...++|+.|....      ....+++   
T Consensus         2 viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~---------~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG   72 (595)
T TIGR02350         2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTK---------NGERLVGQPAKRQAVTNPENTIYSIKRFMG   72 (595)
T ss_pred             EEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeC---------CCCEEECHHHHHhhhhCchhhhHHHHHHhC
Confidence            6899999999999998665554        23455554422         22456777664320      1111111   


Q ss_pred             -------------ccc------------CCccCC-HHHHHHHHHHhc---ccccccCCCCCcEEEeeCCCCCHHhHHHHH
Q 017125           72 -------------PIE------------HGIVNN-WDDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANREKMT  122 (377)
Q Consensus        72 -------------p~~------------~g~i~d-~~~~~~~~~~~~---~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~  122 (377)
                                   |+.            .|.... .+....+++++.   ...++.  .-..++|++|..++..+|+.+.
T Consensus        73 ~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~--~v~~~VItVPa~f~~~qR~a~~  150 (595)
T TIGR02350        73 RRFDEVTEEAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGE--KVTEAVITVPAYFNDAQRQATK  150 (595)
T ss_pred             CCchHHHHHhhcCCeeEEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHH
Confidence                         110            111112 233344444442   123332  2357999999999999999988


Q ss_pred             hhhcccCCCCeEEEechhhhhhhhcCC------ceEEEEeCCCCceEEEEee--Ccee-cccceEEecccHHHHHHHHHH
Q 017125          123 QIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMK  193 (377)
Q Consensus       123 ~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~~v~--~g~~-~~~~~~~~~~GG~~i~~~l~~  193 (377)
                      +.+ +.+|++.+.++++|.||+++++.      .+.+|+|+|+++++++.+.  +|.. +..+.....+||.++++.|.+
T Consensus       151 ~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~  229 (595)
T TIGR02350       151 DAG-KIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIID  229 (595)
T ss_pred             HHH-HHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHH
Confidence            766 88999999999999999998763      4689999999999998774  3322 222223458999999999988


Q ss_pred             HHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcC----C--C-c--EEecCC
Q 017125          194 ILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELP----D--G-Q--VITIGA  254 (377)
Q Consensus       194 ~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp----d--~-~--~i~i~~  254 (377)
                      ++..+     +.++.....     ...++..|..++..                ....+.+|    |  | .  .+.++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~----------------~~~~i~i~~~~~~~~g~~~~~~~itr  293 (595)
T TIGR02350       230 WLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSV----------------LSTEINLPFITADASGPKHLEMTLTR  293 (595)
T ss_pred             HHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCC----------------CceEEEeeecccCCCCCeeEEEEEeH
Confidence            87532     222221110     12355556555421                11112111    1  1 1  223333


Q ss_pred             cccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEEC
Q 017125          255 ERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA  333 (377)
Q Consensus       255 ~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~  333 (377)
                      +.|. ..+.++..         +.+.|.+++....  +...-++.|+|+||+|++|++.+.+++.+..        .+..
T Consensus       294 ~~fe~l~~~l~~~---------~~~~i~~~l~~a~--~~~~~i~~V~LvGGssriP~v~~~i~~~f~~--------~~~~  354 (595)
T TIGR02350       294 AKFEELTADLVER---------TKEPVRQALKDAG--LSASDIDEVILVGGSTRIPAVQELVKDFFGK--------EPNK  354 (595)
T ss_pred             HHHHHHHHHHHHH---------HHHHHHHHHHHcC--CCHhHCcEEEEECCcccChHHHHHHHHHhCC--------cccC
Confidence            3321 12222222         4444455554432  2334568899999999999999888876631        2344


Q ss_pred             CCCCccccchhhhhhhcc
Q 017125          334 PPERKYSVWIGGSILASL  351 (377)
Q Consensus       334 ~~~~~~~~w~Gasi~a~l  351 (377)
                      ..+|+.++..||+++|..
T Consensus       355 ~~~pdeava~GAa~~aa~  372 (595)
T TIGR02350       355 SVNPDEVVAIGAAIQGGV  372 (595)
T ss_pred             CcCcHHHHHHHHHHHHHH
Confidence            567889999999999864

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.

>PRK00290 dnaK molecular chaperone DnaK; Provisional

Probab=99.79  E-value=6.3e-19  Score=178.22  Aligned_cols=297  Identities=18%  Similarity=0.224  Sum_probs=178.5

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCC--------CCCCceeeeeCCCCccccCCCccceeccchhccc------Ccceeec--
Q 017125            8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR------GILTLKY--   71 (377)
Q Consensus         8 ~~viiD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~------~~~~~~~--   71 (377)
                      .+|.||+||+++++++..+..|.        ..+||+++...         +...++|+.|....      ....+++  
T Consensus         3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~---------~~~~~vG~~A~~~~~~~p~~~i~~~Kr~i   73 (627)
T PRK00290          3 KIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTK---------DGERLVGQPAKRQAVTNPENTIFSIKRLM   73 (627)
T ss_pred             cEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeC---------CCCEEEcHHHHHhhhhCchhhHHHHHHHh
Confidence            47999999999999998655443        34555555432         22355666654320      0011111  


Q ss_pred             --------------ccc-------------CCccCC-HHHHHHHHHHhc---ccccccCCCCCcEEEeeCCCCCHHhHHH
Q 017125           72 --------------PIE-------------HGIVNN-WDDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANREK  120 (377)
Q Consensus        72 --------------p~~-------------~g~i~d-~~~~~~~~~~~~---~~~L~~~~~~~~vvl~~~~~~~~~~~~~  120 (377)
                                    |+.             .|.... .+....+++++.   ...++.  .-..++|++|..++..+|+.
T Consensus        74 G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~--~v~~~VItVPa~f~~~qR~a  151 (627)
T PRK00290         74 GRRDEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGE--KVTEAVITVPAYFNDAQRQA  151 (627)
T ss_pred             CCCchHHHHHhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCC--CCceEEEEECCCCCHHHHHH
Confidence                          110             121122 233344444442   123332  23579999999999999998


Q ss_pred             HHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCce--e-cccceEEecccHHHHHHHHH
Q 017125          121 MTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGY--A-LPHAILRLDLAGRDLTDALM  192 (377)
Q Consensus       121 l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~--~-~~~~~~~~~~GG~~i~~~l~  192 (377)
                      +.+.+ +.+|++.+.++++|.||+++++.     .+.+|+|+|+++++++.+.-+.  . +..+....++||.++++.|.
T Consensus       152 ~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~  230 (627)
T PRK00290        152 TKDAG-KIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRII  230 (627)
T ss_pred             HHHHH-HHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHH
Confidence            87777 88999999999999999998864     5799999999999998775431  1 22223346899999999999


Q ss_pred             HHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcC----C--C-c--EEecC
Q 017125          193 KILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELP----D--G-Q--VITIG  253 (377)
Q Consensus       193 ~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp----d--~-~--~i~i~  253 (377)
                      +++.++     +.++.....     ...++..|+.++.-                ....+.++    |  | .  .+.++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~----------------~~~~i~i~~~~~d~~g~~~~~~~it  294 (627)
T PRK00290        231 DYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSA----------------QQTEINLPFITADASGPKHLEIKLT  294 (627)
T ss_pred             HHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCC----------------CeEEEEEeecccCCCCCeEEEEEEC
Confidence            887542     222221110     12345555554421                11122221    1  1 1  22333


Q ss_pred             Ccccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEE
Q 017125          254 AERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVV  332 (377)
Q Consensus       254 ~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~  332 (377)
                      .+.|. ..+.++..         +.+.|.+++.....  ...-++.|+|+||+|++|.+.+++++.+..        .+.
T Consensus       295 R~~fe~l~~~l~~~---------~~~~i~~~l~~a~~--~~~~id~ViLvGGssriP~v~~~l~~~fg~--------~~~  355 (627)
T PRK00290        295 RAKFEELTEDLVER---------TIEPCKQALKDAGL--SVSDIDEVILVGGSTRMPAVQELVKEFFGK--------EPN  355 (627)
T ss_pred             HHHHHHHHHHHHHH---------HHHHHHHHHHHcCC--ChhhCcEEEEECCcCCChHHHHHHHHHhCC--------CCC
Confidence            33321 12222222         44445555554432  234468899999999999999998877632        223


Q ss_pred             CCCCCccccchhhhhhhcc
Q 017125          333 APPERKYSVWIGGSILASL  351 (377)
Q Consensus       333 ~~~~~~~~~w~Gasi~a~l  351 (377)
                      ...+|+.++..||+++|..
T Consensus       356 ~~~npdeava~GAa~~aa~  374 (627)
T PRK00290        356 KGVNPDEVVAIGAAIQGGV  374 (627)
T ss_pred             cCcCChHHHHHhHHHHHHH
Confidence            4457889999999999864

>PRK01433 hscA chaperone protein HscA; Provisional

Probab=99.79  E-value=1.5e-18  Score=172.95  Aligned_cols=225  Identities=16%  Similarity=0.187  Sum_probs=147.3

Q ss_pred             HHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEE
Q 017125           82 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGI  153 (377)
Q Consensus        82 ~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~l  153 (377)
                      +....+++++-.   ..++.  .-..+++++|..++..+|+.+.+.+ +..|++.+.++++|.||++++|.     .+.+
T Consensus       120 ei~a~iL~~lk~~ae~~lg~--~v~~aVITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vl  196 (595)
T PRK01433        120 EIAAEIFIYLKNQAEEQLKT--NITKAVITVPAHFNDAARGEVMLAA-KIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYL  196 (595)
T ss_pred             HHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHHHHH-HHcCCCEEEEecCcHHHHHHHhcccCCCCEEE
Confidence            444555555431   23332  2357999999999999999888776 88999999999999999999874     3579


Q ss_pred             EEeCCCCceEEEEee--Ccee-cccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHH
Q 017125          154 VLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELE  230 (377)
Q Consensus       154 VVDiG~~~t~v~~v~--~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~  230 (377)
                      |+|+|+++++|+.+.  +|.. +..+.....+||.++++.|.+++..+...-........++..|+.++.-.        
T Consensus       197 V~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~ekaK~~LS~~~--------  268 (595)
T PRK01433        197 VYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFDLPNSIDTLQLAKKAKETLTYKD--------  268 (595)
T ss_pred             EEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCc--------
Confidence            999999999998774  4422 22222345799999999999998754211111112234666666554210        


Q ss_pred             HhccCCCcceEEEcCCCcEEecCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCc
Q 017125          231 TAKISSAVEKSYELPDGQVITIGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP  309 (377)
Q Consensus       231 ~~~~~~~~~~~~~lpd~~~i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~  309 (377)
                                .+..   ..+.++.+.|. ..+.+|..         +.+.|.+++....    ..-++.|+|+||+|++|
T Consensus       269 ----------~~~~---~~~~itr~efe~l~~~l~~~---------~~~~i~~~L~~a~----~~~Id~ViLvGGssriP  322 (595)
T PRK01433        269 ----------SFNN---DNISINKQTLEQLILPLVER---------TINIAQECLEQAG----NPNIDGVILVGGATRIP  322 (595)
T ss_pred             ----------cccc---ceEEEcHHHHHHHHHHHHHH---------HHHHHHHHHhhcC----cccCcEEEEECCcccCh
Confidence                      0111   13444443332 22223222         4444555554443    23368899999999999


Q ss_pred             ChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          310 GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       310 g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      .+.+.+++.+..        ++....+|+.++-.||+++|..
T Consensus       323 ~v~~~l~~~f~~--------~~~~~~npdeaVA~GAAi~a~~  356 (595)
T PRK01433        323 LIKDELYKAFKV--------DILSDIDPDKAVVWGAALQAEN  356 (595)
T ss_pred             hHHHHHHHHhCC--------CceecCCchHHHHHHHHHHHHH
Confidence            888888876621        2344567899999999999875

>PRK13411 molecular chaperone DnaK; Provisional

Probab=99.79  E-value=1.4e-18  Score=175.74  Aligned_cols=215  Identities=17%  Similarity=0.250  Sum_probs=138.3

Q ss_pred             CCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC------ceEEEEeCCCCceEEEEee--Ccee-
Q 017125          102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYA-  172 (377)
Q Consensus       102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~~v~--~g~~-  172 (377)
                      -..++|++|..++..+|+.+.+.+ +..|++.+.++++|.||++++|.      .+.+|+|+|+++++|+.+.  +|.. 
T Consensus       133 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~  211 (653)
T PRK13411        133 VTQAVITVPAYFTDAQRQATKDAG-TIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFE  211 (653)
T ss_pred             cceEEEEECCCCCcHHHHHHHHHH-HHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEE
Confidence            357999999999999999888776 88999999999999999999864      3589999999999998764  3322 


Q ss_pred             cccceEEecccHHHHHHHHHHHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEE
Q 017125          173 LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSY  242 (377)
Q Consensus       173 ~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~  242 (377)
                      +..+.....+||.++++.|.+++.++     +.++.....     ...++..|+.++.-                ....+
T Consensus       212 V~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~----------------~~~~i  275 (653)
T PRK13411        212 VKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSM----------------LTTSI  275 (653)
T ss_pred             EEEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCC----------------CceEE
Confidence            22223345899999999998887542     222221110     12344555554421                11112


Q ss_pred             Ec----CC---Cc--EEecCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChH
Q 017125          243 EL----PD---GQ--VITIGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIA  312 (377)
Q Consensus       243 ~l----pd---~~--~i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~  312 (377)
                      .+    .|   +.  .+.++.+.|. ..+.++..         +.+.|.+++...  .+...-++.|+|+||+|++|.+.
T Consensus       276 ~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~---------~~~~i~~~L~~a--~~~~~~id~ViLvGGssriP~v~  344 (653)
T PRK13411        276 NLPFITADETGPKHLEMELTRAKFEELTKDLVEA---------TIEPMQQALKDA--GLKPEDIDRVILVGGSTRIPAVQ  344 (653)
T ss_pred             EEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHH---------HHHHHHHHHHHc--CCCHHHCcEEEEECCCCCcchHH
Confidence            11    11   11  2233333321 11222221         444445555444  23445568999999999999999


Q ss_pred             HHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          313 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       313 ~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      ++|++.+...       .+....+|+.++-.||+++|..
T Consensus       345 ~~l~~~f~~~-------~~~~~~npdeaVA~GAAi~aa~  376 (653)
T PRK13411        345 EAIQKFFGGK-------QPDRSVNPDEAVALGAAIQAGV  376 (653)
T ss_pred             HHHHHHcCCc-------CcCCCCCchHHHHHHHHHHHHh
Confidence            9888766321       2333457789999999999864

>PRK13410 molecular chaperone DnaK; Provisional

Probab=99.78  E-value=2e-18  Score=174.25  Aligned_cols=297  Identities=18%  Similarity=0.203  Sum_probs=176.6

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCC--------CCCCceeeeeCCCCccccCCCccceeccchhcc------cCcceeec--
Q 017125            8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKY--   71 (377)
Q Consensus         8 ~~viiD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~--   71 (377)
                      .+|.||+||+++++++..+..|.        ..+||+++...+         ...+||..|...      +....+++  
T Consensus         3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~---------~~~~vG~~A~~~~~~~p~~ti~~~KRli   73 (668)
T PRK13410          3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKD---------GELLVGQLARRQLVLNPQNTFYNLKRFI   73 (668)
T ss_pred             cEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCC---------CCEEECHHHHHhhHhCccceehHHhhhh
Confidence            57999999999999988655443        345666655322         235566665432      01111111  


Q ss_pred             --------------ccc-----CC----------ccCC-HHHHHHHHHHhc---ccccccCCCCCcEEEeeCCCCCHHhH
Q 017125           72 --------------PIE-----HG----------IVNN-WDDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANR  118 (377)
Q Consensus        72 --------------p~~-----~g----------~i~d-~~~~~~~~~~~~---~~~L~~~~~~~~vvl~~~~~~~~~~~  118 (377)
                                    |+.     +|          .... .+....+++++.   ...++.  .-..++|++|..++..+|
T Consensus        74 G~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR  151 (668)
T PRK13410         74 GRRYDELDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGE--PVTGAVITVPAYFNDSQR  151 (668)
T ss_pred             CCCchhhHHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHH
Confidence                          110     11          1111 233344444442   123332  235699999999999999


Q ss_pred             HHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--Ccee-cccceEEecccHHHHHHH
Q 017125          119 EKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDA  190 (377)
Q Consensus       119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~~~~~~~~~~GG~~i~~~  190 (377)
                      +.+.+.+ +..|++.+.++++|.||++++|.     .+.+|+|+|+++++|+.+.  +|.. +..+.....+||.++++.
T Consensus       152 ~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~  230 (668)
T PRK13410        152 QATRDAG-RIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKR  230 (668)
T ss_pred             HHHHHHH-HHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHH
Confidence            9887777 88999999999999999999874     4689999999999998775  3322 222233468999999999


Q ss_pred             HHHHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcC----C--C-c--EEe
Q 017125          191 LMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELP----D--G-Q--VIT  251 (377)
Q Consensus       191 l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp----d--~-~--~i~  251 (377)
                      |.+++..+     +.++.....     ...++..|..++..                ....+.+|    +  + .  .+.
T Consensus       231 l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~----------------~~~~i~i~~~~~~~~g~~~~~~~  294 (668)
T PRK13410        231 IVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGV----------------SVTDISLPFITATEDGPKHIETR  294 (668)
T ss_pred             HHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCC----------------CceEEEEeeeecCCCCCeeEEEE
Confidence            98887542     222221100     12345555554421                11122221    1  1 1  122


Q ss_pred             cCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEE
Q 017125          252 IGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIK  330 (377)
Q Consensus       252 i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~  330 (377)
                      +..+.|. .++.++..         +.+.|.+++...  .+.+.-++.|+|+||+|++|.+.+.+++.+.    .    .
T Consensus       295 itR~~FE~l~~~l~~r---------~~~~i~~~L~~a--g~~~~dId~VvLVGGssRiP~V~~~l~~~fg----~----~  355 (668)
T PRK13410        295 LDRKQFESLCGDLLDR---------LLRPVKRALKDA--GLSPEDIDEVVLVGGSTRMPMVQQLVRTLIP----R----E  355 (668)
T ss_pred             ECHHHHHHHHHHHHHH---------HHHHHHHHHHHc--CCChhhCcEEEEECCccccHHHHHHHHHHcC----C----C
Confidence            3322221 12222221         334444444432  2334566789999999999988888876553    1    1


Q ss_pred             EECCCCCccccchhhhhhhcc
Q 017125          331 VVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       331 v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      +....+|+.++-.||+++|..
T Consensus       356 ~~~~~npdeaVA~GAAi~aa~  376 (668)
T PRK13410        356 PNQNVNPDEVVAVGAAIQAGI  376 (668)
T ss_pred             cccCCCCchHHHHhHHHHHHh
Confidence            233457788999999999875

>PRK05183 hscA chaperone protein HscA; Provisional

Probab=99.78  E-value=2e-18  Score=173.58  Aligned_cols=295  Identities=19%  Similarity=0.166  Sum_probs=175.8

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCC--------CCCCceeeeeCCCCccccCCCccceeccchhccc------Cccee----
Q 017125            8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR------GILTL----   69 (377)
Q Consensus         8 ~~viiD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~------~~~~~----   69 (377)
                      .+|.||+||+++.+++..+..|.        ..+||+++...          +...+|.+|....      ....+    
T Consensus        20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~----------~~~~vG~~A~~~~~~~p~~ti~~~Krli   89 (616)
T PRK05183         20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLE----------DGIEVGYEARANAAQDPKNTISSVKRFM   89 (616)
T ss_pred             eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcC----------CCEEEcHHHHHhhHhCchhhHHHHHHHh
Confidence            56999999999999987555443        23455554422          2256676654320      00000    


Q ss_pred             ------------eccc--------------cCCccCCHHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhHHH
Q 017125           70 ------------KYPI--------------EHGIVNNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREK  120 (377)
Q Consensus        70 ------------~~p~--------------~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~  120 (377)
                                  .+|+              ..+.+...+....+++++..   +.++.  .-..+++++|..++..+|+.
T Consensus        90 G~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a  167 (616)
T PRK05183         90 GRSLADIQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGG--ELDGAVITVPAYFDDAQRQA  167 (616)
T ss_pred             CCCchhhhhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHH
Confidence                        0111              11222223444455555531   23332  23579999999999999998


Q ss_pred             HHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--Ccee-cccceEEecccHHHHHHHHH
Q 017125          121 MTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALM  192 (377)
Q Consensus       121 l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~~~~~~~~~~GG~~i~~~l~  192 (377)
                      +.+.+ +.+|++.+.++++|.||+++++.     .+.+|+|+|+++++|+.+.  +|.. +..+.....+||.++++.|.
T Consensus       168 ~~~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~  246 (616)
T PRK05183        168 TKDAA-RLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLA  246 (616)
T ss_pred             HHHHH-HHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHH
Confidence            87776 88999999999999999998764     3679999999999998875  3322 22223346899999999999


Q ss_pred             HHHHHc-CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEecCCcccc-ccccCCC
Q 017125          193 KILTER-GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFR-CPEVLFQ  265 (377)
Q Consensus       193 ~~l~~~-~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~-~~E~lf~  265 (377)
                      +++.++ +.+......     ...++..|+.++.-                ....+.+++-. -.++.+.|. ..+.++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~----------------~~~~i~i~~~~-~~itr~efe~l~~~l~~  309 (616)
T PRK05183        247 DWILEQAGLSPRLDPEDQRLLLDAARAAKEALSDA----------------DSVEVSVALWQ-GEITREQFNALIAPLVK  309 (616)
T ss_pred             HHHHHHcCCCcCCCHHHHHHHHHHHHHHHHhcCCC----------------ceEEEEEecCC-CeEcHHHHHHHHHHHHH
Confidence            888654 322211100     12244445444311                11223332210 012222221 1121221


Q ss_pred             CccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhh
Q 017125          266 PSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGG  345 (377)
Q Consensus       266 p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Ga  345 (377)
                      .         +.+.+.+++....  +...-++.|+|+||+|++|.+.+.|++.+..        .+....+|+.++-.||
T Consensus       310 ~---------~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~npdeaVA~GA  370 (616)
T PRK05183        310 R---------TLLACRRALRDAG--VEADEVKEVVMVGGSTRVPLVREAVGEFFGR--------TPLTSIDPDKVVAIGA  370 (616)
T ss_pred             H---------HHHHHHHHHHHcC--CCcccCCEEEEECCcccChHHHHHHHHHhcc--------CcCcCCCchHHHHHHH
Confidence            1         3344444444332  2233467899999999999999988876632        1223457889999999


Q ss_pred             hhhhcc
Q 017125          346 SILASL  351 (377)
Q Consensus       346 si~a~l  351 (377)
                      +++|..
T Consensus       371 Ai~a~~  376 (616)
T PRK05183        371 AIQADI  376 (616)
T ss_pred             HHHHHH
Confidence            999874

>PTZ00186 heat shock 70 kDa precursor protein; Provisional

Probab=99.78  E-value=3e-18  Score=172.34  Aligned_cols=218  Identities=17%  Similarity=0.192  Sum_probs=140.5

Q ss_pred             CCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--Ccee-c
Q 017125          102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-L  173 (377)
Q Consensus       102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~  173 (377)
                      -..+||++|..++..+|+.+.+.+ +.+|++.+.++++|+||++++|.     .+.+|+|+|+++++|+.+.  +|.. +
T Consensus       160 v~~aVITVPayF~~~qR~at~~Aa-~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V  238 (657)
T PTZ00186        160 VSNAVVTCPAYFNDAQRQATKDAG-TIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEV  238 (657)
T ss_pred             cceEEEEECCCCChHHHHHHHHHH-HHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEE
Confidence            357999999999999999887766 88999999999999999999874     4789999999999999875  6643 2


Q ss_pred             ccceEEecccHHHHHHHHHHHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEE
Q 017125          174 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYE  243 (377)
Q Consensus       174 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~  243 (377)
                      ..+.....+||.++++.|.+++..+     +.++.....     ...++..|..++....            ......+.
T Consensus       239 ~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~------------~~i~i~~i  306 (657)
T PTZ00186        239 KATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAME------------TEVNLPFI  306 (657)
T ss_pred             EEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCc------------eEEEEeee
Confidence            2223356899999999998877542     222221100     2335566665543210            00011111


Q ss_pred             cC--CC---cEEecCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHH
Q 017125          244 LP--DG---QVITIGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSK  317 (377)
Q Consensus       244 lp--d~---~~i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~  317 (377)
                      ..  +|   ..+.++.+.|. ..+.++..         +.+.+.+++....  +...-++.|+|+||+|+||.+.+.+++
T Consensus       307 ~~~~~g~~~~~~~ItR~efe~l~~~l~~r---------~~~~v~~~L~~a~--~~~~dId~VvLVGGssriP~V~~~l~~  375 (657)
T PTZ00186        307 TANADGAQHIQMHISRSKFEGITQRLIER---------SIAPCKQCMKDAG--VELKEINDVVLVGGMTRMPKVVEEVKK  375 (657)
T ss_pred             ccCCCCCcceEEEecHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CChhhCCEEEEECCcccChHHHHHHHH
Confidence            11  11   12333333332 22222222         3334444444332  234456789999999999999988887


Q ss_pred             HHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      .+...        .....+|+.++-.||+++|..
T Consensus       376 ~fg~~--------~~~~~nPdeaVA~GAAi~a~~  401 (657)
T PTZ00186        376 FFQKD--------PFRGVNPDEAVALGAATLGGV  401 (657)
T ss_pred             HhCCC--------ccccCCCchHHHHhHHHHHHH
Confidence            76421        123457789999999999874

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=99.76  E-value=1.2e-17  Score=169.22  Aligned_cols=215  Identities=16%  Similarity=0.232  Sum_probs=140.7

Q ss_pred             CCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-------ceEEEEeCCCCceEEEEee--Ccee
Q 017125          102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIY--EGYA  172 (377)
Q Consensus       102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~v~~v~--~g~~  172 (377)
                      -..++|++|..++..+|+.+.+.+ +.+|++.+.++++|.||+++++.       .+.+|+|+|+++++|+.+.  +|..
T Consensus       140 v~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~  218 (653)
T PTZ00009        140 VKDAVVTVPAYFNDSQRQATKDAG-TIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIF  218 (653)
T ss_pred             cceeEEEeCCCCCHHHHHHHHHHH-HHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeE
Confidence            357999999999999999888776 88999999999999999998863       4789999999999998764  4432


Q ss_pred             -cccceEEecccHHHHHHHHHHHHHHc------CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcce
Q 017125          173 -LPHAILRLDLAGRDLTDALMKILTER------GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEK  240 (377)
Q Consensus       173 -~~~~~~~~~~GG~~i~~~l~~~l~~~------~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~  240 (377)
                       +..+.....+||.++++.|.+++..+      +.++.....     ...++..|+.++..                ...
T Consensus       219 ~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~----------------~~~  282 (653)
T PTZ00009        219 EVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSS----------------TQA  282 (653)
T ss_pred             EEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCC----------------ceE
Confidence             22222346899999999999887542      122211110     12345555554421                122


Q ss_pred             EEEcC---CCcE--EecCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHH
Q 017125          241 SYELP---DGQV--ITIGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADR  314 (377)
Q Consensus       241 ~~~lp---d~~~--i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~r  314 (377)
                      .+.++   ++..  +.++.+.|. ..+.+|..         +.+.|.+++.....+  ..-++.|+|+||+|++|.+.+.
T Consensus       283 ~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~---------~~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~v~~~  351 (653)
T PTZ00009        283 TIEIDSLFEGIDYNVTISRARFEELCGDYFRN---------TLQPVEKVLKDAGMD--KRSVHEVVLVGGSTRIPKVQSL  351 (653)
T ss_pred             EEEEEeccCCceEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcCCC--HHHCcEEEEECCCCCChhHHHH
Confidence            23322   3322  233333332 22223322         445556666554332  3456889999999999999888


Q ss_pred             HHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          315 MSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       315 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      |++.+...       .+....+|+.++-.||+++|..
T Consensus       352 i~~~f~~~-------~~~~~~npdeaVA~GAa~~aa~  381 (653)
T PTZ00009        352 IKDFFNGK-------EPCKSINPDEAVAYGAAVQAAI  381 (653)
T ss_pred             HHHHhCCC-------CCCCCCCcchHHhhhhhhhHHH
Confidence            88766321       2233457789999999999764

>PRK11678 putative chaperone; Provisional

Probab=99.66  E-value=1.1e-15  Score=147.63  Aligned_cols=180  Identities=17%  Similarity=0.189  Sum_probs=112.3

Q ss_pred             CEEEeCCCCceEEeeeCCCCC--------CCCCCceeeeeCCCCc-------------------------------cccC
Q 017125            9 PLVCDNGTGMVKAGFAGDDAP--------RAVFPSIVGRPRHTGV-------------------------------MVGM   49 (377)
Q Consensus         9 ~viiD~Gs~~~k~G~~~~~~P--------~~~~ps~~~~~~~~~~-------------------------------~~~~   49 (377)
                      .+.||+||+++-+++..+..|        ...+||.++.......                               -...
T Consensus         2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T PRK11678          2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV   81 (450)
T ss_pred             eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence            489999999999999865433        3466777755321000                               0011


Q ss_pred             CCccceeccchhccc----Ccc----eeec-----cccCCccCCHH-HHHHHHHHhc---ccccccCCCCCcEEEeeCCC
Q 017125           50 GQKDAYVGDEAQSKR----GIL----TLKY-----PIEHGIVNNWD-DMEKIWHHTF---YNELRVAPEEHPVLLTEAPL  112 (377)
Q Consensus        50 ~~~~~~vg~~~~~~~----~~~----~~~~-----p~~~g~i~d~~-~~~~~~~~~~---~~~L~~~~~~~~vvl~~~~~  112 (377)
                      +.....+|.++.+..    +..    .+++     ++..+.+...+ ....+|.++-   ...++  ..-..+||+.|..
T Consensus        82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~~~~~~~e~l~a~iL~~lk~~ae~~~g--~~v~~~VItvPa~  159 (450)
T PRK11678         82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQ--AAITQAVIGRPVN  159 (450)
T ss_pred             cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCccceeCHHHHHHHHHHHHHHHHHHHhC--CCCCcEEEEECCc
Confidence            234567888876541    111    1222     22323322333 2344444442   11232  2235799999998


Q ss_pred             CC-----HHhHHH--HHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCc----------
Q 017125          113 NP-----KANREK--MTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEG----------  170 (377)
Q Consensus       113 ~~-----~~~~~~--l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g----------  170 (377)
                      +.     ..+|+.  .+.-+.+..|++.+.++++|+||+++++.     .+.+|+|+|+++++++.+.-+          
T Consensus       160 F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~  239 (450)
T PRK11678        160 FQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRS  239 (450)
T ss_pred             cccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCcccccCCcc
Confidence            76     555543  24445588999999999999999999873     578999999999999887421          


Q ss_pred             -eecccceEEecccHHHHHHHHH
Q 017125          171 -YALPHAILRLDLAGRDLTDALM  192 (377)
Q Consensus       171 -~~~~~~~~~~~~GG~~i~~~l~  192 (377)
                       .++-++  -..+||.++++.|.
T Consensus       240 ~~vla~~--G~~lGG~DfD~~L~  260 (450)
T PRK11678        240 ASLLGHS--GQRIGGNDLDIALA  260 (450)
T ss_pred             eeEEecC--CCCCChHHHHHHHH
Confidence             122111  13799999999986

>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=3.1e-15  Score=148.57  Aligned_cols=306  Identities=19%  Similarity=0.186  Sum_probs=178.8

Q ss_pred             CCCCEEEeCCCCceEEeeeCCC-CCCCCCCceeeeeCCCCccccCCCccceeccchhcc------cCcceeeccccCC--
Q 017125            6 DIQPLVCDNGTGMVKAGFAGDD-APRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKYPIEHG--   76 (377)
Q Consensus         6 ~~~~viiD~Gs~~~k~G~~~~~-~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~p~~~g--   76 (377)
                      -..+|.||+|++++.+++.... .|. ++++..+.+.-+++.........++|..|.+.      ...+.+++.+..+  
T Consensus         4 ~~~~iGIDlGTTNS~vA~~~~~~~~~-vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~   82 (579)
T COG0443           4 AKKAIGIDLGTTNSVVAVMRGGGLPK-VIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN   82 (579)
T ss_pred             CceEEEEEcCCCcEEEEEEeCCCCce-EecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC
Confidence            3568999999999999988755 344 33444333222222222222357788877653      1223444444322  


Q ss_pred             ----------ccCCH-HHHHHHHHHhc---ccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhh
Q 017125           77 ----------IVNNW-DDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL  142 (377)
Q Consensus        77 ----------~i~d~-~~~~~~~~~~~---~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~  142 (377)
                                ..... +....++.++-   ...|+  ..-..+++++|.+++..+|..+.+.. +..|++.+.++++|.|
T Consensus        83 ~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg--~~v~~~VItVPayF~d~qR~at~~A~-~iaGl~vlrlinEPtA  159 (579)
T COG0443          83 GLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLG--EKVTDAVITVPAYFNDAQRQATKDAA-RIAGLNVLRLINEPTA  159 (579)
T ss_pred             CCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhC--CCcceEEEEeCCCCCHHHHHHHHHHH-HHcCCCeEEEecchHH
Confidence                      11111 23334444431   12333  23468999999999999988777666 7899999999999999


Q ss_pred             hhhhcCC-----ceEEEEeCCCCceEEEEeeC--cee-cccceEEecccHHHHHHHHHHHHHHc----C-CCCcChhH--
Q 017125          143 SLYASGR-----TTGIVLDSGDGVSHTVPIYE--GYA-LPHAILRLDLAGRDLTDALMKILTER----G-YSFTTTAE--  207 (377)
Q Consensus       143 a~~~~g~-----~~~lVVDiG~~~t~v~~v~~--g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~----~-~~~~~~~~--  207 (377)
                      |++++|.     .+.+|+|+|+++++++.|.=  |.. +........+||++++..|...+..+    + .++.....  
T Consensus       160 AAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~  239 (579)
T COG0443         160 AALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAAL  239 (579)
T ss_pred             HHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHH
Confidence            9999985     47899999999999998753  422 23344567999999999998887543    2 23322111  


Q ss_pred             ---HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEecCC--ccccccccCCCCccCCCCCCChHHHHHH
Q 017125          208 ---REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGA--ERFRCPEVLFQPSMIGMESAGIHETTYN  282 (377)
Q Consensus       208 ---~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~--~~~~~~E~lf~p~~~~~~~~~l~~~I~~  282 (377)
                         ...++..|..++....              ....+..-++. +.+..  .|-.+ |-+            +.+++.+
T Consensus       240 ~rL~~~ae~aK~~LS~~~~--------------~~i~~~~~~~~-~~~~~~ltR~~~-E~l------------~~dll~r  291 (579)
T COG0443         240 QRLREAAEKAKIELSSATQ--------------TSINLPSIGGD-IDLLKELTRAKF-EEL------------ILDLLER  291 (579)
T ss_pred             HHHHHHHHHHHHHcccccc--------------cccchhhcccc-chhhhhhhHHHH-HHH------------HHHHHHH
Confidence               1334455555443211              11111111111 11100  11111 111            2222222


Q ss_pred             HHhcC-----ChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          283 SIMKC-----DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       283 ~i~~~-----~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      ++..+     +..+...-++-|+++||.++||=+.+.+.+.+.    .    ......+|+.++-.||++.|..
T Consensus       292 ~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~----~----~~~~~inpdeava~GAa~qa~~  357 (579)
T COG0443         292 TIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG----K----EPEKSINPDEAVALGAAIQAAV  357 (579)
T ss_pred             HHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhC----c----cccccCCccHHHHHHHHHHHHh
Confidence            22221     223344556789999999999955555554443    2    3344557889999999998775

>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins

Probab=99.64  E-value=9.5e-16  Score=155.50  Aligned_cols=215  Identities=20%  Similarity=0.285  Sum_probs=134.5

Q ss_pred             CcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC------ceEEEEeCCCCceEEEEee--Ccee-c
Q 017125          103 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYA-L  173 (377)
Q Consensus       103 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~~v~--~g~~-~  173 (377)
                      ..+++++|..++..+|+.+.+.+ +.+|++.+.++++|.||+++++.      .+.+|+|+|+++++++.+.  +|.. +
T Consensus       136 ~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v  214 (602)
T PF00012_consen  136 TDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV  214 (602)
T ss_dssp             EEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred             ccceeeechhhhhhhhhcccccc-cccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence            46999999999999999888877 88999999999999999988763      4789999999999998774  4533 2


Q ss_pred             ccceEEecccHHHHHHHHHHHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEE
Q 017125          174 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYE  243 (377)
Q Consensus       174 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~  243 (377)
                      ........+||.++++.|.+++.++     +.+......     ...++..|+.++..              ......+.
T Consensus       215 ~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~--------------~~~~~~~~  280 (602)
T PF00012_consen  215 LATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSN--------------DNTEITIS  280 (602)
T ss_dssp             EEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTS--------------SSSEEEEE
T ss_pred             cccccccccccceecceeeccccccccccccccccccccccccccccccccccccccc--------------cccccccc
Confidence            2233457899999999999988642     222221100     12344445544321              01122222


Q ss_pred             c----CCCcEEec--CCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHH
Q 017125          244 L----PDGQVITI--GAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMS  316 (377)
Q Consensus       244 l----pd~~~i~i--~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~  316 (377)
                      +    +++..+.+  ..+.|. ..+.++..         +.+.|.+++.....  ...-++.|+|+||+|++|-+.+.|+
T Consensus       281 ~~~~~~~~~~~~~~itr~~fe~l~~~~~~~---------~~~~i~~~l~~~~~--~~~~i~~V~lvGG~sr~p~v~~~l~  349 (602)
T PF00012_consen  281 IESLYDDGEDFSITITREEFEELCEPLLER---------IIEPIEKALKDAGL--KKEDIDSVLLVGGSSRIPYVQEALK  349 (602)
T ss_dssp             EEEEETTTEEEEEEEEHHHHHHHTHHHHHH---------THHHHHHHHHHTT----GGGESEEEEESGGGGSHHHHHHHH
T ss_pred             cccccccccccccccccceecccccccccc---------cccccccccccccc--cccccceeEEecCcccchhhhhhhh
Confidence            1    22433333  333322 22222222         45566666655432  2444678999999999997777776


Q ss_pred             HHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          317 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       317 ~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      +.+.    .    .+....+|+.++-.||+++|..
T Consensus       350 ~~f~----~----~~~~~~~p~~aVA~GAa~~a~~  376 (602)
T PF00012_consen  350 ELFG----K----KISKSVNPDEAVARGAALYAAI  376 (602)
T ss_dssp             HHTT----S----EEB-SS-TTTHHHHHHHHHHHH
T ss_pred             hccc----c----ccccccccccccccccccchhh
Confidence            6543    2    3445567889999999999864

Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....

>PRK09472 ftsA cell division protein FtsA; Reviewed

Probab=99.62  E-value=3.4e-14  Score=137.07  Aligned_cols=202  Identities=18%  Similarity=0.197  Sum_probs=134.9

Q ss_pred             CHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHH
Q 017125          114 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT  188 (377)
Q Consensus       114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~  188 (377)
                      +....+.+.+ +++..|+....++.+|+|+++++..     ...+|||+|+++|+++.+.+|.++  ....+++||++++
T Consensus       164 ~~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~it  240 (420)
T PRK09472        164 HNDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNVVT  240 (420)
T ss_pred             chHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeechHHHHH
Confidence            3445555666 5588999999999999999998753     358999999999999999999888  7788999999999


Q ss_pred             HHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCC--C-cEEecCCccccccccCCC
Q 017125          189 DALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPD--G-QVITIGAERFRCPEVLFQ  265 (377)
Q Consensus       189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd--~-~~i~i~~~~~~~~E~lf~  265 (377)
                      +.+...+.   .      ..+.+|++|.+++....+..          .....+.+++  + ....++  +....+++..
T Consensus       241 ~dIa~~l~---i------~~~~AE~lK~~~g~~~~~~~----------~~~~~i~v~~~~~~~~~~i~--~~~l~~ii~~  299 (420)
T PRK09472        241 SDIAYAFG---T------PPSDAEAIKVRHGCALGSIV----------GKDESVEVPSVGGRPPRSLQ--RQTLAEVIEP  299 (420)
T ss_pred             HHHHHHhC---c------CHHHHHHHHHhcceeccccC----------CCCceeEecCCCCCCCeEEc--HHHHHHHHHH
Confidence            99987762   1      34679999998886533210          0111222221  1 001111  1111122111


Q ss_pred             CccCCCCCCChHHHHHHHHhcCChhHHH-----HhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECC------
Q 017125          266 PSMIGMESAGIHETTYNSIMKCDVDIRK-----DLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP------  334 (377)
Q Consensus       266 p~~~~~~~~~l~~~I~~~i~~~~~~~~~-----~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~------  334 (377)
                      .      ...|.+.|.+++..++..++.     .+.++||||||+|+|||+.+.+++.+..      ++++..|      
T Consensus       300 r------~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~------~vri~~P~~~~g~  367 (420)
T PRK09472        300 R------YTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHT------QVRIGAPLNITGL  367 (420)
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCC------CeEEeCCcccCCC
Confidence            0      011344555555555444433     3556799999999999999999988842      3444332      


Q ss_pred             ----CCCccccchhhhhhhcc
Q 017125          335 ----PERKYSVWIGGSILASL  351 (377)
Q Consensus       335 ----~~~~~~~w~Gasi~a~l  351 (377)
                          .+|.|++-.|..+|+..
T Consensus       368 ~~~~~~P~~ata~Gl~~~~~~  388 (420)
T PRK09472        368 TDYAQEPYYSTAVGLLHYGKE  388 (420)
T ss_pred             hhhcCCcHHHHHHHHHHHhhh
Confidence                36889999999998764

>TIGR01174 ftsA cell division protein FtsA

Probab=99.62  E-value=1.3e-14  Score=138.10  Aligned_cols=175  Identities=17%  Similarity=0.232  Sum_probs=114.5

Q ss_pred             CHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHH
Q 017125          114 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT  188 (377)
Q Consensus       114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~  188 (377)
                      ++...+.+.+.+ +.+|+..+.++.+|+|+++++..     .+.+|||+|+++|+++.+.+|.+.  .....++||++++
T Consensus       156 ~~~~v~~~~~~~-~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~--~~~~i~~GG~~it  232 (371)
T TIGR01174       156 SSTILRNLVKCV-ERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIR--YTKVIPIGGNHIT  232 (371)
T ss_pred             EHHHHHHHHHHH-HHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEE--EEeeecchHHHHH
Confidence            556666666655 88999999999999999987642     368999999999999999999877  4577899999999


Q ss_pred             HHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCC---CcEEecCCcccc-ccccCC
Q 017125          189 DALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPD---GQVITIGAERFR-CPEVLF  264 (377)
Q Consensus       189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd---~~~i~i~~~~~~-~~E~lf  264 (377)
                      +.+.+.+.         ...+.+|++|.+++....+.          ......+.++.   +....++.+.+. +.+..+
T Consensus       233 ~~i~~~l~---------~~~~~AE~lK~~~~~~~~~~----------~~~~~~i~~~~~~~~~~~~is~~~l~~ii~~~~  293 (371)
T TIGR01174       233 KDIAKALR---------TPLEEAERIKIKYGCASIPL----------EGPDENIEIPSVGERPPRSLSRKELAEIIEARA  293 (371)
T ss_pred             HHHHHHhC---------CCHHHHHHHHHHeeEecccC----------CCCCCEEEeccCCCCCCeEEcHHHHHHHHHHHH
Confidence            99987652         13567999999998763221          00111222221   111122111110 111111


Q ss_pred             CCccCCCCCCChHHHHH-HHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHh
Q 017125          265 QPSMIGMESAGIHETTY-NSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITA  321 (377)
Q Consensus       265 ~p~~~~~~~~~l~~~I~-~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~  321 (377)
                      +         .+.+.|. +.+.+.+..  ..+-+.|+||||+|++||+.+++++.+..
T Consensus       294 ~---------ei~~~i~~~~L~~~~~~--~~i~~gIvLtGG~S~ipgi~~~l~~~~~~  340 (371)
T TIGR01174       294 E---------EILEIVKQKELRKSGFK--EELNGGIVLTGGGAQLEGIVELAEKVFDN  340 (371)
T ss_pred             H---------HHHHHHHHHHHHhcCCc--ccCCCEEEEeChHHcccCHHHHHHHHhCC
Confidence            1         1444443 455444322  22323499999999999999999998843

This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.

>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]

Probab=99.59  E-value=2.5e-14  Score=134.90  Aligned_cols=201  Identities=19%  Similarity=0.256  Sum_probs=135.2

Q ss_pred             CHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHH
Q 017125          114 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT  188 (377)
Q Consensus       114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~  188 (377)
                      +....+++.+.+ |+.+.....++-+|+|++.+.=.     -++++||+|+++|+|+.+.+|.+.  +...+|+||+++|
T Consensus       163 ~~~~~~Nl~k~v-~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~--~~~~ipvgG~~vT  239 (418)
T COG0849         163 PKNILENLEKCV-ERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALR--YTGVIPVGGDHVT  239 (418)
T ss_pred             chHHHHHHHHHH-HHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEE--EEeeEeeCccHHH
Confidence            455566666666 88999999999999999987632     489999999999999999999999  7778999999999


Q ss_pred             HHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCC--CcEEecCCccccccccCCCC
Q 017125          189 DALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPD--GQVITIGAERFRCPEVLFQP  266 (377)
Q Consensus       189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd--~~~i~i~~~~~~~~E~lf~p  266 (377)
                      +.+...|.         ...+.+|++|.+++....+..          .....+++|.  +.. ...-.+....++.-. 
T Consensus       240 ~DIa~~l~---------t~~~~AE~iK~~~g~a~~~~~----------~~~~~i~v~~vg~~~-~~~~t~~~ls~II~a-  298 (418)
T COG0849         240 KDIAKGLK---------TPFEEAERIKIKYGSALISLA----------DDEETIEVPSVGSDI-PRQVTRSELSEIIEA-  298 (418)
T ss_pred             HHHHHHhC---------CCHHHHHHHHHHcCccccCcC----------CCcceEecccCCCcc-cchhhHHHHHHHHHh-
Confidence            99998882         245779999999987644321          1122222221  111 000011111111100 


Q ss_pred             ccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECC----------CC
Q 017125          267 SMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP----------PE  336 (377)
Q Consensus       267 ~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~----------~~  336 (377)
                           ...-+.+++...|++.-..  ..+..+|+||||.+++||+.+-.+.-+..      .+++..|          .+
T Consensus       299 -----R~~Ei~~lV~~~l~~~g~~--~~~~~gvVlTGG~a~l~Gi~elA~~if~~------~vRig~P~~~~Gl~d~~~~  365 (418)
T COG0849         299 -----RVEEILELVKAELRKSGLP--NHLPGGVVLTGGGAQLPGIVELAERIFGR------PVRLGVPLNIVGLTDIARN  365 (418)
T ss_pred             -----hHHHHHHHHHHHHHHcCcc--ccCCCeEEEECchhcCccHHHHHHHhcCC------ceEeCCCccccCchhhccC
Confidence                 0011334444455443322  56678899999999999999888776653      3444333          35


Q ss_pred             Cccccchhhhhhhcc
Q 017125          337 RKYSVWIGGSILASL  351 (377)
Q Consensus       337 ~~~~~w~Gasi~a~l  351 (377)
                      |.|++-.|.-.|+..
T Consensus       366 p~fs~avGl~~~~~~  380 (418)
T COG0849         366 PAFSTAVGLLLYGAL  380 (418)
T ss_pred             chhhhhHHHHHHHhh
Confidence            899999999998885

>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]

Probab=99.40  E-value=1.1e-13  Score=114.24  Aligned_cols=237  Identities=18%  Similarity=0.195  Sum_probs=157.7

Q ss_pred             CCCCCCEEEeCCCCceEEeeeC-CCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCH-
Q 017125            4 AEDIQPLVCDNGTGMVKAGFAG-DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNW-   81 (377)
Q Consensus         4 ~~~~~~viiD~Gs~~~k~G~~~-~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~-   81 (377)
                      +++.-.+.+|+|+..+..-.-. |..|-..                                 ..+.-.-+++|.+.|+ 
T Consensus        26 d~sk~~vGVDLGT~~iV~~vlD~d~~Pvag---------------------------------~~~~advVRDGiVvdf~   72 (277)
T COG4820          26 DESKLWVGVDLGTCDIVSMVLDRDGQPVAG---------------------------------CLDWADVVRDGIVVDFF   72 (277)
T ss_pred             ccCceEEEeecccceEEEEEEcCCCCeEEE---------------------------------EehhhhhhccceEEehh
Confidence            3446678999999998865443 3244211                                 0111233467777775 


Q ss_pred             ---HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCC
Q 017125           82 ---DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSG  158 (377)
Q Consensus        82 ---~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG  158 (377)
                         +.++++.+.+ .++|++...  +..-..||-+.....+....++ |..|....+.+++|.++++-.+.++|-|||+|
T Consensus        73 eaveiVrrlkd~l-Ek~lGi~~t--ha~taiPPGt~~~~~ri~iNVi-ESAGlevl~vlDEPTAaa~vL~l~dg~VVDiG  148 (277)
T COG4820          73 EAVEIVRRLKDTL-EKQLGIRFT--HAATAIPPGTEQGDPRISINVI-ESAGLEVLHVLDEPTAAADVLQLDDGGVVDIG  148 (277)
T ss_pred             hHHHHHHHHHHHH-HHhhCeEee--eccccCCCCccCCCceEEEEee-cccCceeeeecCCchhHHHHhccCCCcEEEeC
Confidence               3344444444 577777542  3334456666555555555555 99999999999999999999999999999999


Q ss_pred             CCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCc
Q 017125          159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAV  238 (377)
Q Consensus       159 ~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~  238 (377)
                      +++|-|+.+-+|.++  ....-+.||.+++..|.-.   ++++      .+.+|++|+..-.-                 
T Consensus       149 GGTTGIsi~kkGkVi--y~ADEpTGGtHmtLvlAG~---ygi~------~EeAE~~Kr~~k~~-----------------  200 (277)
T COG4820         149 GGTTGISIVKKGKVI--YSADEPTGGTHMTLVLAGN---YGIS------LEEAEQYKRGHKKG-----------------  200 (277)
T ss_pred             CCcceeEEEEcCcEE--EeccCCCCceeEEEEEecc---cCcC------HhHHHHhhhccccc-----------------
Confidence            999999999999999  4455699999887666422   2333      35577777642100                 


Q ss_pred             ceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHH
Q 017125          239 EKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKE  318 (377)
Q Consensus       239 ~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~e  318 (377)
                                     .|-|......++.         +.+++.+-|...++.       .+.|+||.+..||+++-++++
T Consensus       201 ---------------~Eif~~v~PV~eK---------MAeIv~~hie~~~i~-------dl~lvGGac~~~g~e~~Fe~~  249 (277)
T COG4820         201 ---------------EEIFPVVKPVYEK---------MAEIVARHIEGQGIT-------DLWLVGGACMQPGVEELFEKQ  249 (277)
T ss_pred             ---------------hhcccchhHHHHH---------HHHHHHHHhccCCCc-------ceEEecccccCccHHHHHHHH
Confidence                           0111111222222         677888888777653       799999999999999999999


Q ss_pred             HHhhCCCCceEEEECCCCCccccchh
Q 017125          319 ITALAPSSMKIKVVAPPERKYSVWIG  344 (377)
Q Consensus       319 L~~~~~~~~~v~v~~~~~~~~~~w~G  344 (377)
                      |        ...|+.|..|.|-.=+|
T Consensus       250 l--------~l~v~~P~~p~y~TPLg  267 (277)
T COG4820         250 L--------ALQVHLPQHPLYMTPLG  267 (277)
T ss_pred             h--------ccccccCCCcceechhh
Confidence            8        23555555555554444

>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=3.9e-11  Score=109.24  Aligned_cols=214  Identities=18%  Similarity=0.230  Sum_probs=126.3

Q ss_pred             CcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC------ceEEEEeCCCCceEEEE--eeCcee-c
Q 017125          103 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVP--IYEGYA-L  173 (377)
Q Consensus       103 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~~--v~~g~~-~  173 (377)
                      .+.++++|.+++..+|+..-+ +---.|...+.++++|.+|+.++|.      .+-+|.|+|+++.+|+.  |-+|.- +
T Consensus       173 ~~AVvTvPAYFNDAQrQATKD-AGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeV  251 (663)
T KOG0100|consen  173 THAVVTVPAYFNDAQRQATKD-AGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEV  251 (663)
T ss_pred             cceEEecchhcchHHHhhhcc-cceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEE
Confidence            568999999999999986443 3366888999999999999999985      58899999999977764  456643 2


Q ss_pred             ccceEEecccHHHHHHHHHHHHHH-----cCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCc
Q 017125          174 PHAILRLDLAGRDLTDALMKILTE-----RGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQ  248 (377)
Q Consensus       174 ~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~  248 (377)
                      ........+||.+++++..+++-+     .|.++..  +...+..++++.-.         .+...++......++    
T Consensus       252 laTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~k--dnkA~~KLrRe~Ek---------AKRaLSsqhq~riEI----  316 (663)
T KOG0100|consen  252 LATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRK--DNKAVQKLRREVEK---------AKRALSSQHQVRIEI----  316 (663)
T ss_pred             EecCCCcccCccchHHHHHHHHHHHHhhhcCCccch--hhHHHHHHHHHHHH---------HHhhhccccceEEee----
Confidence            233345689999999887776532     2444432  33334444332110         000001111112221    


Q ss_pred             EEecCCccccccccCCCCccCCCC-----C----CChHHHHHHHHhcC--ChhHHHHhhcCceeccCCcCCcChHHHHHH
Q 017125          249 VITIGAERFRCPEVLFQPSMIGME-----S----AGIHETTYNSIMKC--DVDIRKDLYGNIVLSGGSTMFPGIADRMSK  317 (377)
Q Consensus       249 ~i~i~~~~~~~~E~lf~p~~~~~~-----~----~~l~~~I~~~i~~~--~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~  317 (377)
                                  |.||....++..     +    ..|-..-++-+++.  +.++++.-+..|||+||+++||    .+|+
T Consensus       317 ------------eS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIP----KvQq  380 (663)
T KOG0100|consen  317 ------------ESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIP----KVQQ  380 (663)
T ss_pred             ------------eeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccCh----hHHH
Confidence                        344443322210     0    00111111112222  5667777788999999999999    5555


Q ss_pred             HHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      -|.+.+.-..   ....-+|+-++-.||+.-|..
T Consensus       381 llk~fF~GKe---pskGinPdEAVAYGAAVQaGv  411 (663)
T KOG0100|consen  381 LLKDFFNGKE---PSKGINPDEAVAYGAAVQAGV  411 (663)
T ss_pred             HHHHHhCCCC---ccCCCChHHHHHhhhhhhhcc
Confidence            5655553211   111225567777888776553

>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=1.8e-11  Score=119.27  Aligned_cols=214  Identities=17%  Similarity=0.221  Sum_probs=133.1

Q ss_pred             CcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-------ceEEEEeCCCCceEEEEee--Cce-e
Q 017125          103 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIY--EGY-A  172 (377)
Q Consensus       103 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~v~~v~--~g~-~  172 (377)
                      ..+++++|..++..+|+..-+.. ..+|++.+.++++|.|+++++|.       .+.+|.|+|+++.+|+++.  +|. .
T Consensus       144 ~~aviTVPa~F~~~Qr~at~~A~-~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~  222 (620)
T KOG0101|consen  144 KKAVVTVPAYFNDSQRAATKDAA-LIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFE  222 (620)
T ss_pred             eeEEEEecCCcCHHHHHHHHHHH-HhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhh
Confidence            45899999999999998777666 77999999999999999999873       4779999999999888774  442 2


Q ss_pred             cccceEEecccHHHHHHHHHHHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEE
Q 017125          173 LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSY  242 (377)
Q Consensus       173 ~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~  242 (377)
                      +.......++||.++++.|.+++...     +.+......     ...+|+.|+.+...                .....
T Consensus       223 vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~----------------~~~~i  286 (620)
T KOG0101|consen  223 VKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSS----------------TQASI  286 (620)
T ss_pred             hhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhccc----------------cccee
Confidence            23334467999999999998887421     212211100     11233334333211                11111


Q ss_pred             E---cCCCcEEecCCccccc---cccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHH
Q 017125          243 E---LPDGQVITIGAERFRC---PEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMS  316 (377)
Q Consensus       243 ~---lpd~~~i~i~~~~~~~---~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~  316 (377)
                      .   |-+|..+...-.|-++   +.-||..         ..+.+..+++..-  +-+..+..||||||++.+|.+..-++
T Consensus       287 ~vdsL~~g~d~~~~itrarfe~l~~dlf~~---------~~~~v~~~L~da~--~dk~~i~~vvlVGGstriPk~~~ll~  355 (620)
T KOG0101|consen  287 EIDSLYEGIDFYTSITRARFEELNADLFRS---------TLEPVEKALKDAK--LDKSDIDEVVLVGGSTRIPKVQKLLE  355 (620)
T ss_pred             ccchhhccccccceeehhhhhhhhhHHHHH---------HHHHHHHHHHhhc--cCccCCceeEEecCcccchHHHHHHH
Confidence            1   2233333222222222   2234333         3344444554332  33444678999999999996665555


Q ss_pred             HHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          317 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       317 ~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      .-+..       -++..+-+|+.++-.||++.|..
T Consensus       356 d~f~~-------k~~~~sinpDeavA~GAavqaa~  383 (620)
T KOG0101|consen  356 DFFNG-------KELNKSINPDEAVAYGAAVQAAI  383 (620)
T ss_pred             HHhcc-------cccccCCCHHHHHHhhHHHHhhh
Confidence            44422       12334457899999999999886

>TIGR01175 pilM type IV pilus assembly protein PilM

Probab=99.34  E-value=8.2e-11  Score=111.32  Aligned_cols=155  Identities=16%  Similarity=0.177  Sum_probs=108.6

Q ss_pred             CHHhHHHHHhhhcccCCCCeEEEechhhhhhhhc-----------CCc-eEEEEeCCCCceEEEEeeCceecccceEEec
Q 017125          114 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS-----------GRT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLD  181 (377)
Q Consensus       114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~-----------g~~-~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~  181 (377)
                      ++...+.+.+.+ +..|+.-..+..+++|.+-+.           ... +.++||+|+++|+++.+.+|.++  ..+.++
T Consensus       141 ~~~~v~~~~~~~-~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~--~~r~i~  217 (348)
T TIGR01175       141 RKEVVDSRLHAL-KLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRML--FTREVP  217 (348)
T ss_pred             cHHHHHHHHHHH-HHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEE--EEEEee
Confidence            677778888775 889999888888888764332           112 48999999999999999999998  778899


Q ss_pred             ccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEecCCccccccc
Q 017125          182 LAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPE  261 (377)
Q Consensus       182 ~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E  261 (377)
                      +||.++++.+.+.+   +.      +.+.++++|...++.. +...+                              ..+
T Consensus       218 ~G~~~i~~~i~~~~---~~------~~~~Ae~~k~~~~~~~-~~~~~------------------------------~~~  257 (348)
T TIGR01175       218 FGTRQLTSELSRAY---GL------NPEEAGEAKQQGGLPL-LYDPE------------------------------VLR  257 (348)
T ss_pred             chHHHHHHHHHHHc---CC------CHHHHHHHHhcCCCCC-chhHH------------------------------HHH
Confidence            99999999998665   22      3456888888765321 10000                              000


Q ss_pred             cCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHH
Q 017125          262 VLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIT  320 (377)
Q Consensus       262 ~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~  320 (377)
                      ..++         .+..-|.++++-+-.......++.|+||||++.++||.+.|+++|.
T Consensus       258 ~~~~---------~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~  307 (348)
T TIGR01175       258 RFKG---------ELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG  307 (348)
T ss_pred             HHHH---------HHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC
Confidence            0111         1445555566444222223346889999999999999999999995

This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.

>PRK13917 plasmid segregation protein ParM; Provisional

Probab=99.27  E-value=2e-10  Score=107.85  Aligned_cols=185  Identities=14%  Similarity=0.151  Sum_probs=108.1

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCC-ccc------------cCCCcc---ceeccchhcccCcceeec
Q 017125            8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG-VMV------------GMGQKD---AYVGDEAQSKRGILTLKY   71 (377)
Q Consensus         8 ~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~-~~~------------~~~~~~---~~vg~~~~~~~~~~~~~~   71 (377)
                      .++.||+|-.+||+-....   ...+|+.++...... .+.            ..++..   +++|+++......  ...
T Consensus         3 ~v~~iDiG~g~tK~~~~~~---~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~v~v~g~~~~~y~~G~~~~~~~~~--~~~   77 (344)
T PRK13917          3 YVMALDFGNGFVKGKINDE---KFVIPSRYGRKTNENNQLSGFVDNKLDVSEFIINGNEDEVLLFGNDLDKTTNT--GKD   77 (344)
T ss_pred             eEEEEeccCCeEEEEecCC---CEEcceeccCCCCccccccccCCCCCcceEEEecCcccccEEEcchhhhcccc--cCC
Confidence            4899999999999866422   234566654332111 111            112233   7778775332110  001


Q ss_pred             ccc-CCccCCHHHHHHHHHHhcccccccCC--CCCcEEE--eeCCCCCHHh-HHHHHhhhccc-----------CCCCeE
Q 017125           72 PIE-HGIVNNWDDMEKIWHHTFYNELRVAP--EEHPVLL--TEAPLNPKAN-REKMTQIMFET-----------FNTPAM  134 (377)
Q Consensus        72 p~~-~g~i~d~~~~~~~~~~~~~~~L~~~~--~~~~vvl--~~~~~~~~~~-~~~l~~~lfe~-----------~~~~~v  134 (377)
                      +.. ++.. .-+..+.++..++...+....  +...++|  -.|...-... ++.+.+.+-..           ..+..|
T Consensus        78 ~~~~~~~y-~~~~y~~L~~~Al~~~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V  156 (344)
T PRK13917         78 TYSTNDRY-DIKQFKTLVKCALAGLAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGV  156 (344)
T ss_pred             cccccccc-cchhHHHHHHHHHHHhhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEE
Confidence            111 1111 123566666665433222211  1233333  4554442222 24454443221           345678


Q ss_pred             EEechhhhhhhhcCC-------------ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHc
Q 017125          135 YVAIQAVLSLYASGR-------------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER  198 (377)
Q Consensus       135 ~~~~~~~~a~~~~g~-------------~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~  198 (377)
                      .++|+|+.|.+....             ...+|||+|+.+|+++.+.++.+.......++.|..++.+.+.+.+..+
T Consensus       157 ~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~  233 (344)
T PRK13917        157 KVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISKK  233 (344)
T ss_pred             EEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHhh
Confidence            999999998765422             2569999999999999999999988777789999999999999998543

>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A

Probab=99.24  E-value=3e-10  Score=106.88  Aligned_cols=193  Identities=20%  Similarity=0.307  Sum_probs=114.0

Q ss_pred             CHHHHHHHHHHhcccccccCCCC-----------------CcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhh
Q 017125           80 NWDDMEKIWHHTFYNELRVAPEE-----------------HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL  142 (377)
Q Consensus        80 d~~~~~~~~~~~~~~~L~~~~~~-----------------~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~  142 (377)
                      +.+.++..+.+=..+++..+.++                 ..|+++.   .++...+..++++ +.+|..-..+-.++.|
T Consensus        86 ~~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~A---a~k~~v~~~~~~~-~~aGL~~~~vDv~~~A  161 (340)
T PF11104_consen   86 PEKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVA---APKEIVESYVELF-EEAGLKPVAVDVEAFA  161 (340)
T ss_dssp             -HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEE---EEHHHHHHHHHHH-HHTT-EEEEEEEHHHH
T ss_pred             CHHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEE---EcHHHHHHHHHHH-HHcCCceEEEeehHHH
Confidence            44667777777666666654332                 2344432   2567777777666 7788886655544444


Q ss_pred             --hhhhc---------CCceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHH
Q 017125          143 --SLYAS---------GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIV  211 (377)
Q Consensus       143 --a~~~~---------g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~  211 (377)
                        -++..         ...+.++||+|++.|.++.+.+|.++  ..+.+++||+++++.+.+.+         ..+.+.+
T Consensus       162 l~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~--f~R~i~~G~~~l~~~i~~~~---------~i~~~~A  230 (340)
T PF11104_consen  162 LARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPI--FSRSIPIGGNDLTEAIAREL---------GIDFEEA  230 (340)
T ss_dssp             GGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHT---------T--HHHH
T ss_pred             HHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEE--EEEEEeeCHHHHHHHHHHhc---------CCCHHHH
Confidence              23322         12356999999999999999999998  77889999999999998776         2244567


Q ss_pred             HHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhH
Q 017125          212 RDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDI  291 (377)
Q Consensus       212 ~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~  291 (377)
                      +.+|..... ..+...+                              +.+.+++.         |..-|.++++-+-...
T Consensus       231 e~~k~~~~l-~~~~~~~------------------------------~l~~~~~~---------l~~EI~rsl~~y~~~~  270 (340)
T PF11104_consen  231 EELKRSGGL-PEEYDQD------------------------------ALRPFLEE---------LAREIRRSLDFYQSQS  270 (340)
T ss_dssp             HHHHHHT-------HHH------------------------------HHHHHHHH---------HHHHHHHHHHHHHHH-
T ss_pred             HHHHhcCCC-CcchHHH------------------------------HHHHHHHH---------HHHHHHHHHHHHHhcC
Confidence            777776432 1111000                              00011111         5666677776554444


Q ss_pred             HHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEEC
Q 017125          292 RKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA  333 (377)
Q Consensus       292 ~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~  333 (377)
                      ...-++.|+||||+|+++||.+.|+++|      +..+.+..
T Consensus       271 ~~~~i~~I~L~Ggga~l~gL~~~l~~~l------~~~v~~~~  306 (340)
T PF11104_consen  271 GGESIERIYLSGGGARLPGLAEYLSEEL------GIPVEVIN  306 (340)
T ss_dssp             -----SEEEEESGGGGSTTHHHHHHHHH------TSEEEE--
T ss_pred             CCCCCCEEEEECCccchhhHHHHHHHHH------CCceEEcC
Confidence            5566789999999999999999999999      44555554

>TIGR03739 PRTRC_D PRTRC system protein D

Probab=99.22  E-value=3.6e-10  Score=105.35  Aligned_cols=186  Identities=12%  Similarity=0.068  Sum_probs=116.9

Q ss_pred             EeCCCCceEEeeeC-CCCC-CCCCCceeeeeCCCC------------ccccCCCccceeccchhcccCcceeeccccCCc
Q 017125           12 CDNGTGMVKAGFAG-DDAP-RAVFPSIVGRPRHTG------------VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGI   77 (377)
Q Consensus        12 iD~Gs~~~k~G~~~-~~~P-~~~~ps~~~~~~~~~------------~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~   77 (377)
                      ||+|-.++|+-+.. +..+ ...+||.++......            .....++..++||+.+..... ....+.+.+..
T Consensus         2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~~-~~~~~~~~~~~   80 (320)
T TIGR03739         2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAAD-TNRARQLHDEY   80 (320)
T ss_pred             ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhccc-Cccceeccccc
Confidence            89999999987653 2232 356787764432211            111134566788877633221 01111222222


Q ss_pred             cCCHHHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhccc--------CCCCeEEEechhhhhhhhc--
Q 017125           78 VNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET--------FNTPAMYVAIQAVLSLYAS--  147 (377)
Q Consensus        78 i~d~~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~--------~~~~~v~~~~~~~~a~~~~--  147 (377)
                      ..+ +....++.+++.. .+. .....+++-.|...-...++.+.+.+-..        ..+..|.++|+|+.|.+..  
T Consensus        81 ~~~-~~~~~L~~~Al~~-~~~-~~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~  157 (320)
T TIGR03739        81 TET-PEYMALLRGALAL-SKV-REIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVA  157 (320)
T ss_pred             cCC-HHHHHHHHHHHHH-hcC-CCCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHh
Confidence            222 3455555555422 222 12224666677776666778777776432        4677899999999886643  


Q ss_pred             -------CCceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHc-CCC
Q 017125          148 -------GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER-GYS  201 (377)
Q Consensus       148 -------g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~-~~~  201 (377)
                             .....+|||+|+.+|+++.+.++.+......+.+.|...+.+.+.+.+.++ +.+
T Consensus       158 ~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~~g~~  219 (320)
T TIGR03739       158 QHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKDIGTP  219 (320)
T ss_pred             cCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhhcCCC
Confidence                   234679999999999999888888887777788999999999999998754 443

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.

>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=7e-10  Score=108.18  Aligned_cols=95  Identities=16%  Similarity=0.159  Sum_probs=77.7

Q ss_pred             CCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC----------ceEEEEeCCCCceEEEEeeCce
Q 017125          102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR----------TTGIVLDSGDGVSHTVPIYEGY  171 (377)
Q Consensus       102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~----------~~~lVVDiG~~~t~v~~v~~g~  171 (377)
                      -..+++++|+++.+.+|..+++.+ +-+|...++++++..++|+.+|.          +.-++.|+|+++|.++.|.--.
T Consensus       158 Ikd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~  236 (902)
T KOG0104|consen  158 IKDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQL  236 (902)
T ss_pred             hhheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEe
Confidence            356999999999999999999988 88999999999999999999984          4679999999999999885322


Q ss_pred             eccc-------------ceEEecccHHHHHHHHHHHHHH
Q 017125          172 ALPH-------------AILRLDLAGRDLTDALMKILTE  197 (377)
Q Consensus       172 ~~~~-------------~~~~~~~GG~~i~~~l~~~l~~  197 (377)
                      +-..             ..-...+||..++.+|..+|..
T Consensus       237 v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~  275 (902)
T KOG0104|consen  237 VKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN  275 (902)
T ss_pred             eccccccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence            1111             1113378999999999999864

>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.99  E-value=2e-08  Score=89.92  Aligned_cols=148  Identities=17%  Similarity=0.208  Sum_probs=96.5

Q ss_pred             HhhhcccCCCCeEEEechhhhh--hhh-----cCC----ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHH
Q 017125          122 TQIMFETFNTPAMYVAIQAVLS--LYA-----SGR----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDA  190 (377)
Q Consensus       122 ~~~lfe~~~~~~v~~~~~~~~a--~~~-----~g~----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~  190 (377)
                      ..-+|+..|.....+--+..+.  +|.     .+.    ...+|+|||++.|.++.+.+|+++  ..+..++||+.+++.
T Consensus       154 ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~l--y~r~~~~g~~Qlt~~  231 (354)
T COG4972         154 RIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKIL--YTREVPVGTDQLTQE  231 (354)
T ss_pred             HHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeee--eEeeccCcHHHHHHH
Confidence            3445577777655554444433  222     111    235699999999999999999999  778999999999999


Q ss_pred             HHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEecCCccccccccCCCCccCC
Q 017125          191 LMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIG  270 (377)
Q Consensus       191 l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~  270 (377)
                      +.+...         .+...++++|...... .++..+.-..                              +       
T Consensus       232 i~r~~~---------L~~~~a~~~k~~~~~P-~~y~~~vl~~------------------------------f-------  264 (354)
T COG4972         232 IQRAYS---------LTEEKAEEIKRGGTLP-TDYGSEVLRP------------------------------F-------  264 (354)
T ss_pred             HHHHhC---------CChhHhHHHHhCCCCC-CchhHHHHHH------------------------------H-------
Confidence            987761         1334577777765532 2332211000                              0       


Q ss_pred             CCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHH
Q 017125          271 MESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIT  320 (377)
Q Consensus       271 ~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~  320 (377)
                        ...|.+-|.++|+-+-.---..-+..|+|+||++.+.|+.+.+++.|.
T Consensus       265 --~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~  312 (354)
T COG4972         265 --LGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLS  312 (354)
T ss_pred             --HHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhC
Confidence              011566666777654211122335689999999999999999999984

>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=4.2e-08  Score=95.53  Aligned_cols=95  Identities=13%  Similarity=0.160  Sum_probs=78.1

Q ss_pred             CCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC------------ceEEEEeCCCCceEEEEe--
Q 017125          102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------------TTGIVLDSGDGVSHTVPI--  167 (377)
Q Consensus       102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------------~~~lVVDiG~~~t~v~~v--  167 (377)
                      -..++|.+|.++...+|..+++.+ ...|+..+.++++..|+++++|.            .+...||+||+.++++..  
T Consensus       137 v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF  215 (727)
T KOG0103|consen  137 VSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAF  215 (727)
T ss_pred             CCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeee
Confidence            457999999999999999999999 88999999999999999999984            358999999999887755  


Q ss_pred             eCceec-ccceEEecccHHHHHHHHHHHHHH
Q 017125          168 YEGYAL-PHAILRLDLAGRDLTDALMKILTE  197 (377)
Q Consensus       168 ~~g~~~-~~~~~~~~~GG~~i~~~l~~~l~~  197 (377)
                      -.|..- ..+.-.-.+||+++++.|.+++..
T Consensus       216 ~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~  246 (727)
T KOG0103|consen  216 TKGKLKVLATAFDRKLGGRDFDEALIDHFAK  246 (727)
T ss_pred             ccCcceeeeeecccccccchHHHHHHHHHHH
Confidence            344322 222334589999999999998864

>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional

Probab=98.73  E-value=4.4e-07  Score=86.17  Aligned_cols=161  Identities=16%  Similarity=0.177  Sum_probs=99.4

Q ss_pred             CCCCCEEEeCCCCceEEeeeC----CCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCC
Q 017125            5 EDIQPLVCDNGTGMVKAGFAG----DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNN   80 (377)
Q Consensus         5 ~~~~~viiD~Gs~~~k~G~~~----~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d   80 (377)
                      ++-..|.||+||++|.+=|+-    +..+....|.+.-                 +..+..-+.  .-...|+......|
T Consensus         4 ~~i~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I-----------------~dkev~yrS--~i~fTPl~~~~~ID   64 (475)
T PRK10719          4 EELLSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEI-----------------IDKEIIYRS--PIYFTPLLKQGEID   64 (475)
T ss_pred             cEEEEEEEeccCceEEEEEEEEEEecccccccCceEEE-----------------eeeEEEEec--CceecCCCCCcccc
Confidence            556779999999999998873    2223333332211                 111111111  12456888888889


Q ss_pred             HHHHHHHHHHhcccccccCCC--CCcEEEeeCCCCCHHhHHHHHhhhcc--------cCC--CCeEEEechhhhhhhhc-
Q 017125           81 WDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFE--------TFN--TPAMYVAIQAVLSLYAS-  147 (377)
Q Consensus        81 ~~~~~~~~~~~~~~~L~~~~~--~~~vvl~~~~~~~~~~~~~l~~~lfe--------~~~--~~~v~~~~~~~~a~~~~-  147 (377)
                      -++++++++.-| +.-++.++  +..+.++.-......+.++.++.+-.        ..|  +.++   -++++++.+. 
T Consensus        65 ~~~i~~~V~~ey-~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~i---va~~ASg~avL  140 (475)
T PRK10719         65 EAAIKELIEEEY-QKAGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESI---IAGKGAGAQTL  140 (475)
T ss_pred             HHHHHHHHHHHH-HHcCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHh---hhHHHhhHHHh
Confidence            999999999987 77777765  34455554444444444444432110        011  1122   1133333222 


Q ss_pred             ---CCceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHH
Q 017125          148 ---GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDA  190 (377)
Q Consensus       148 ---g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~  190 (377)
                         .....++||||+++|+++.+.+|.++  +...+++||++++..
T Consensus       141 seEke~gVa~IDIGgGTT~iaVf~~G~l~--~T~~l~vGG~~IT~D  184 (475)
T PRK10719        141 SEERNTRVLNIDIGGGTANYALFDAGKVI--DTACLNVGGRLIETD  184 (475)
T ss_pred             hhhccCceEEEEeCCCceEEEEEECCEEE--EEEEEecccceEEEC
Confidence               12478999999999999999999998  777899999988765

>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=2.2e-06  Score=81.50  Aligned_cols=186  Identities=18%  Similarity=0.270  Sum_probs=115.1

Q ss_pred             CcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCc-----eEEEEeCCCCceEEEE--eeCceec-c
Q 017125          103 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT-----TGIVLDSGDGVSHTVP--IYEGYAL-P  174 (377)
Q Consensus       103 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-----~~lVVDiG~~~t~v~~--v~~g~~~-~  174 (377)
                      ...++++|.+++..+|+..-... .-+|...+..+++|.+|++++|..     .-.|.|+|+++.+|+.  |.+|.-- .
T Consensus       161 ~~avvtvpAyfndsqRqaTkdag-~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevk  239 (640)
T KOG0102|consen  161 KNAVITVPAYFNDSQRQATKDAG-QIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVK  239 (640)
T ss_pred             hheeeccHHHHhHHHHHHhHhhh-hhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEE
Confidence            46889999999999988655444 889999999999999999999864     4689999999977764  4566432 2


Q ss_pred             cceEEecccHHHHHHHHHHHHHH-----cCCCCcChhHHHHHHHHHH-------hcceeccCHHHHHHHhccCCCcceEE
Q 017125          175 HAILRLDLAGRDLTDALMKILTE-----RGYSFTTTAEREIVRDMKE-------KLAYIALDYEQELETAKISSAVEKSY  242 (377)
Q Consensus       175 ~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~~~~~~~~ik~-------~~~~v~~~~~~~~~~~~~~~~~~~~~  242 (377)
                      ........||.+++..+..++-.     .++++.  .+.....++++       ++....            ......+|
T Consensus       240 sTngdtflggedfd~~~~~~~v~~fk~~~gidl~--kd~~a~qrl~eaaEkaKielSs~~------------~tei~lp~  305 (640)
T KOG0102|consen  240 STNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLT--KDRMALQRLREAAEKAKIELSSRQ------------QTEINLPF  305 (640)
T ss_pred             eccCccccChhHHHHHHHHHHHHhhhcccCcchh--hhHHHHHHHHHHHHhhhhhhhhcc------------cceeccce
Confidence            23345688999999999887742     133322  22233333332       222110            01112233


Q ss_pred             EcCCC---cEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHH-----HhhcCceeccCCcCCcChHHH
Q 017125          243 ELPDG---QVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRK-----DLYGNIVLSGGSTMFPGIADR  314 (377)
Q Consensus       243 ~lpd~---~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~-----~l~~nIvl~GG~s~i~g~~~r  314 (377)
                      ...|.   +-+.+...|-.+.|+             +..+|.+.|.-|-.++|.     .-++.|+|+||.+.+|-..+.
T Consensus       306 iTada~gpkh~~i~~tr~efe~~-------------v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~  372 (640)
T KOG0102|consen  306 ITADASGPKHLNIELTRGEFEEL-------------VPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQST  372 (640)
T ss_pred             eeccCCCCeeEEEeecHHHHHHh-------------hHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHH
Confidence            33332   333333333333222             445666666555444443     445689999999999955554


Q ss_pred             HH
Q 017125          315 MS  316 (377)
Q Consensus       315 l~  316 (377)
                      ++
T Consensus       373 V~  374 (640)
T KOG0102|consen  373 VK  374 (640)
T ss_pred             HH
Confidence            44

>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []

Probab=98.49  E-value=4e-07  Score=84.82  Aligned_cols=70  Identities=19%  Similarity=0.200  Sum_probs=50.6

Q ss_pred             cCCCCeEEEechhhhhhhhc-----CCceEEEEeCCCCceEEEEeeCceecc-cceEEecccHHHHHHHHHHHHHH
Q 017125          128 TFNTPAMYVAIQAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYALP-HAILRLDLAGRDLTDALMKILTE  197 (377)
Q Consensus       128 ~~~~~~v~~~~~~~~a~~~~-----g~~~~lVVDiG~~~t~v~~v~~g~~~~-~~~~~~~~GG~~i~~~l~~~l~~  197 (377)
                      .+.+..|.+.|++++|.+..     .....+|||||+.+|+++.|.++.... .+....++|-..+.+.+.+.|..
T Consensus       137 ~i~I~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~  212 (318)
T PF06406_consen  137 TITIKDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS  212 (318)
T ss_dssp             --EEEEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred             eEEEeeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence            34467899999999998864     235789999999999999998765443 33345688999999999988865

They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.

>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative

Probab=98.44  E-value=9.6e-06  Score=72.86  Aligned_cols=43  Identities=30%  Similarity=0.611  Sum_probs=35.9

Q ss_pred             CceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhh
Q 017125          298 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL  348 (377)
Q Consensus       298 nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~  348 (377)
                      .|+++||.++.+++.+++.+.|.        ..+..++++.+..-+||+++
T Consensus       206 ~Vvl~GGva~n~~l~~~l~~~lg--------~~v~~~~~~~~~~AlGaAl~  248 (248)
T TIGR00241       206 PIVFTGGVSKNKGLVKALEKKLG--------MKVITPPEPQIVGAVGAALL  248 (248)
T ss_pred             CEEEECccccCHHHHHHHHHHhC--------CcEEcCCCccHHHHHHHHhC
Confidence            79999999999999999998882        35666777888888998764

This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.

>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]

Probab=98.15  E-value=8.7e-05  Score=68.28  Aligned_cols=45  Identities=27%  Similarity=0.436  Sum_probs=40.6

Q ss_pred             ceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          299 IVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       299 Ivl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      ||++||++...++.+.+.+.|        ..+|+.||++++.--.||+++|+-
T Consensus       346 iv~~GGva~n~av~~ale~~l--------g~~V~vP~~~ql~GAiGAAL~a~~  390 (396)
T COG1924         346 IVLQGGVALNKAVVRALEDLL--------GRKVIVPPYAQLMGAIGAALIAKE  390 (396)
T ss_pred             EEEECcchhhHHHHHHHHHHh--------CCeeecCCccchhhHHHHHHHHhh
Confidence            999999999999999999888        357888999999999999998864

>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit

Probab=98.11  E-value=3.1e-05  Score=69.96  Aligned_cols=48  Identities=17%  Similarity=0.375  Sum_probs=39.6

Q ss_pred             hhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEE-CCCCCccccchhhhhhhc
Q 017125          295 LYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVV-APPERKYSVWIGGSILAS  350 (377)
Q Consensus       295 l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~-~~~~~~~~~w~Gasi~a~  350 (377)
                      +-+.|+++||.+.-+|+.+.|++.|..        ++. .+++|++..-+||+++|.
T Consensus       239 i~~~v~~~GGva~N~~l~~al~~~Lg~--------~v~~~p~~p~~~GAlGAAL~A~  287 (293)
T TIGR03192       239 VEEGFFITGGIAKNPGVVKRIERILGI--------KAVDTKIDSQIAGALGAALFGY  287 (293)
T ss_pred             CCCCEEEECcccccHHHHHHHHHHhCC--------CceeCCCCccHHHHHHHHHHHH
Confidence            446799999999999999999998832        333 366789999999999984

Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.

>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D

Probab=97.94  E-value=0.00015  Score=64.74  Aligned_cols=50  Identities=20%  Similarity=0.446  Sum_probs=41.0

Q ss_pred             cCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhh
Q 017125          297 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA  349 (377)
Q Consensus       297 ~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a  349 (377)
                      .+|+++||.++-+++.+.|+++|...   ...+.+..+++|++..-+||+++|
T Consensus       213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~~gAlGAAl~~  262 (262)
T TIGR02261       213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIYAGAIGAALWG  262 (262)
T ss_pred             CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchHHHHHHHHHcC
Confidence            46999999999999999999999532   124556667889999999999875

This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.

>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15

Probab=97.89  E-value=0.00016  Score=68.00  Aligned_cols=46  Identities=28%  Similarity=0.570  Sum_probs=40.1

Q ss_pred             cCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017125          297 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       297 ~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      +.|+++||.++.+|+.+.|++.|.        .++..|++|++..-+||+++|+
T Consensus       357 ~~VvftGGva~N~gvv~ale~~Lg--------~~iivPe~pq~~GAiGAAL~A~  402 (404)
T TIGR03286       357 EPVILVGGTSLIEGLVKALGDLLG--------IEVVVPEYSQYIGAVGAALLAS  402 (404)
T ss_pred             CcEEEECChhhhHHHHHHHHHHhC--------CcEEECCcccHHHHHHHHHHhc
Confidence            559999999999999999999883        3566688999999999999985

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.

>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon

Probab=97.69  E-value=0.00017  Score=68.81  Aligned_cols=174  Identities=17%  Similarity=0.243  Sum_probs=111.5

Q ss_pred             CCCEEEeCCCCceEEeeeC----CCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHH
Q 017125            7 IQPLVCDNGTGMVKAGFAG----DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWD   82 (377)
Q Consensus         7 ~~~viiD~Gs~~~k~G~~~----~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~   82 (377)
                      -..|.||+||+||.+=|+-    +..+.+..|.+.-                 ++.+..-+.  .-...|+.+....|-+
T Consensus         3 i~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I-----------------~dkeViYrS--~I~fTPl~~~~~ID~~   63 (473)
T PF06277_consen    3 ILSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEI-----------------VDKEVIYRS--PIYFTPLLSQTEIDAE   63 (473)
T ss_pred             eEEEEEeecCCceeEEEEEeEEEeccCCCccceEEE-----------------eccEEEecC--CccccCCCCCCccCHH
Confidence            3468999999999988874    2223333333211                 111111111  1234688888888999


Q ss_pred             HHHHHHHHhcccccccCCC--CCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEE---echhhhhhhhcCC--------
Q 017125           83 DMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYV---AIQAVLSLYASGR--------  149 (377)
Q Consensus        83 ~~~~~~~~~~~~~L~~~~~--~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~---~~~~~~a~~~~g~--------  149 (377)
                      +++++++.-| +.-++.++  +...|++.---..+++-+.+.+.|-+.+|==.|.-   --+++.|..++|.        
T Consensus        64 al~~iv~~eY-~~Agi~p~~I~TGAVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~  142 (473)
T PF06277_consen   64 ALKEIVEEEY-RKAGITPEDIDTGAVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHH  142 (473)
T ss_pred             HHHHHHHHHH-HHcCCCHHHCccccEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhC
Confidence            9999999997 77788776  34444444444455666666666655444211111   2366777777662        


Q ss_pred             ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHH-----------HHHHHHHHHHcCCCC
Q 017125          150 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL-----------TDALMKILTERGYSF  202 (377)
Q Consensus       150 ~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i-----------~~~l~~~l~~~~~~~  202 (377)
                      ...+=+|||+++|.++.+.+|.++  ...-+++||+.+           ...+..++.+.+.++
T Consensus       143 ~~V~NiDIGGGTtN~avf~~G~v~--~T~cl~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~  204 (473)
T PF06277_consen  143 TVVANIDIGGGTTNIAVFDNGEVI--DTACLDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL  204 (473)
T ss_pred             CeEEEEEeCCCceeEEEEECCEEE--EEEEEeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence            456678999999999999999999  666789999743           445556666655543

The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.

>PRK13317 pantothenate kinase; Provisional

Probab=97.22  E-value=0.018  Score=52.45  Aligned_cols=52  Identities=23%  Similarity=0.168  Sum_probs=41.9

Q ss_pred             HhhcCceecc-CCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017125          294 DLYGNIVLSG-GSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       294 ~l~~nIvl~G-G~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      .-.++|+++| |.++.|++.++|.+.++-.     ..++.-+++|++..-+||++++.
T Consensus       221 ~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~-----~~~~~~p~~~~~~gAlGAaL~a~  273 (277)
T PRK13317        221 KNIENIVYIGSTLTNNPLLQEIIESYTKLR-----NCTPIFLENGGYSGAIGALLLAT  273 (277)
T ss_pred             cCCCeEEEECcccccCHHHHHHHHHHHhcC-----CceEEecCCCchhHHHHHHHHhh
Confidence            3447999999 7999999999999877421     24666688899999999998875

>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T

Probab=96.23  E-value=0.049  Score=42.89  Aligned_cols=58  Identities=19%  Similarity=0.265  Sum_probs=41.3

Q ss_pred             EEEeCCCCceEEEEeeCceecccceEEeccc--------HHHHH--HHHHHHHHHcCCCCcChhHHHHHHHH-HHhccee
Q 017125          153 IVLDSGDGVSHTVPIYEGYALPHAILRLDLA--------GRDLT--DALMKILTERGYSFTTTAEREIVRDM-KEKLAYI  221 (377)
Q Consensus       153 lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~G--------G~~i~--~~l~~~l~~~~~~~~~~~~~~~~~~i-k~~~~~v  221 (377)
                      ++||+|+++|.++...++...  ....+++|        |.+++  +.+.+.++.         ..+.+|++ |.++..+
T Consensus         2 ~~iDiGs~~~~~~i~~~~~~~--~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~---------a~~~AE~~~k~~i~~v   70 (120)
T PF14450_consen    2 VVIDIGSSKTKVAIAEDGSDG--YIRVLGVGEVPSKGIKGGHITDIEDISKAIKI---------AIEEAERLAKCEIGSV   70 (120)
T ss_dssp             EEEEE-SSSEEEEEEETTEEE--EEEEES----------HHHHH--HHHHHHHT-----------HHHHHHH-HHHH--S
T ss_pred             EEEEcCCCcEEEEEEEeCCCC--cEEEEEEecccccccCCCEEEEHHHHHHHHHH---------HHHHHHHHhCCeeeEE
Confidence            689999999999999988776  57788999        99999  888877732         34557777 7665544

>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A

Probab=96.11  E-value=0.015  Score=54.71  Aligned_cols=51  Identities=18%  Similarity=0.274  Sum_probs=42.3

Q ss_pred             hcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhh
Q 017125          296 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA  349 (377)
Q Consensus       296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a  349 (377)
                      -..|+++||.++-+|+.+.|++.|....+   ..+|+.+++|++..-+||+++|
T Consensus       382 ~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a  432 (432)
T TIGR02259       382 TDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA  432 (432)
T ss_pred             CCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence            46899999999999999999999965432   2356668899999999999875

This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).

>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional

Probab=96.03  E-value=0.035  Score=55.08  Aligned_cols=85  Identities=16%  Similarity=0.182  Sum_probs=55.8

Q ss_pred             EEEeeCCCCCHHhHHHHHhhhcccCCCCe--EEEechhhhhhhhc-----CCceEEEEeCCCCceEEEEeeCceecccce
Q 017125          105 VLLTEAPLNPKANREKMTQIMFETFNTPA--MYVAIQAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYALPHAI  177 (377)
Q Consensus       105 vvl~~~~~~~~~~~~~l~~~lfe~~~~~~--v~~~~~~~~a~~~~-----g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~  177 (377)
                      .++.....-.-.+++.+++.+.+..|++.  +.=-.++-+..++.     ...+++|+|||+++|.++.+.+|.+.  ..
T Consensus        80 ~~vATsAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~  157 (496)
T PRK11031         80 RVVATATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT--SL  157 (496)
T ss_pred             EEEEeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee--ee
Confidence            34444445455667778887877777762  22222333322211     12358999999999999999999877  66


Q ss_pred             EEecccHHHHHHHH
Q 017125          178 LRLDLAGRDLTDAL  191 (377)
Q Consensus       178 ~~~~~GG~~i~~~l  191 (377)
                      ..+|+|.-.+++.+
T Consensus       158 ~Sl~lG~vrl~e~f  171 (496)
T PRK11031        158 FSLSMGCVTWLERY  171 (496)
T ss_pred             eEEeccchHHHHHh
Confidence            78999987766443

>TIGR03706 exo_poly_only exopolyphosphatase

Probab=96.02  E-value=0.028  Score=51.95  Aligned_cols=84  Identities=19%  Similarity=0.165  Sum_probs=56.2

Q ss_pred             EEeeCCCCCHHhHHHHHhhhcccCCCCeEEEec---hhhhhhhh----cCCceEEEEeCCCCceEEEEeeCceecccceE
Q 017125          106 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAI---QAVLSLYA----SGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL  178 (377)
Q Consensus       106 vl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~~----~g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~  178 (377)
                      ++....+-.-.+++.+++.+.+..|++ +.++.   ++.+...+    ....+++++|+|+++|.++.+.++.+.  ...
T Consensus        75 ~vaTsa~R~A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~--~~~  151 (300)
T TIGR03706        75 AVATAALRDAKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG--EGV  151 (300)
T ss_pred             EEEcHHHHcCCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe--EEE
Confidence            444444445566777888887777764 33444   33332222    122457999999999999999888877  667


Q ss_pred             EecccHHHHHHHHH
Q 017125          179 RLDLAGRDLTDALM  192 (377)
Q Consensus       179 ~~~~GG~~i~~~l~  192 (377)
                      .+|+|.-.+++.+.
T Consensus       152 Sl~lG~vrl~e~f~  165 (300)
T TIGR03706       152 SLPLGCVRLTEQFF  165 (300)
T ss_pred             EEccceEEhHHhhC
Confidence            89999877776653

It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.

>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis

Probab=95.94  E-value=0.014  Score=53.02  Aligned_cols=48  Identities=25%  Similarity=0.443  Sum_probs=34.9

Q ss_pred             ceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhh
Q 017125          299 IVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA  349 (377)
Q Consensus       299 Ivl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a  349 (377)
                      |+++||..+-+.+.+.|++.|.+..+..   .+..+.+|.+.+..||.++|
T Consensus       224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~a~GAallA  271 (271)
T PF01869_consen  224 VVLSGGVFKNSPLVKALRDALKEKLPKV---PIIIPVEPQYDPAYGAALLA  271 (271)
T ss_dssp             EEEESGGGGCHHHHHHHGGGS-HHHHCC---TCECECCGSSHHHHHHHHHH
T ss_pred             EEEECCccCchHHHHHHHHHHHHhcCCC---ceEECCCCCccHHHHHHHhC
Confidence            9999999988777777766665554442   23344567899999999986

The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.

>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]

Probab=95.88  E-value=0.013  Score=52.04  Aligned_cols=95  Identities=21%  Similarity=0.281  Sum_probs=64.2

Q ss_pred             CCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCc-----eEEEEeCCCCceEEEEeeCceecccceEEecccHHHH
Q 017125          113 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT-----TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL  187 (377)
Q Consensus       113 ~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-----~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i  187 (377)
                      ..+..-+.+++.+-+++|++.-.---++-+|..+.-.+     .-.|+|+|+++|+.+.|-....+  ....+.=.|+.+
T Consensus        92 t~~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v--~~iHlAGAG~mV  169 (332)
T PF08841_consen   92 TDKLQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEV--TAIHLAGAGNMV  169 (332)
T ss_dssp             -SS-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-E--EEEEEE-SHHHH
T ss_pred             cccccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcE--EEEEecCCchhh
Confidence            34444466777777889999887888888887766432     35789999999999888654444  233456678999


Q ss_pred             HHHHHHHHHHcCCCCcChhHHHHHHHHHHh
Q 017125          188 TDALMKILTERGYSFTTTAEREIVRDMKEK  217 (377)
Q Consensus       188 ~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~  217 (377)
                      |..+..-|   |.     .+.+++|+||+.
T Consensus       170 TmlI~sEL---Gl-----~d~~lAE~IKky  191 (332)
T PF08841_consen  170 TMLINSEL---GL-----EDRELAEDIKKY  191 (332)
T ss_dssp             HHHHHHHC---T------S-HHHHHHHHHS
T ss_pred             HHHHHHhh---CC-----CCHHHHHHhhhc
Confidence            99888776   22     267889999974

This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.

>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]

Probab=95.28  E-value=0.089  Score=46.24  Aligned_cols=23  Identities=26%  Similarity=0.575  Sum_probs=21.1

Q ss_pred             CceEEEEeCCCCceEEEEeeCce
Q 017125          149 RTTGIVLDSGDGVSHTVPIYEGY  171 (377)
Q Consensus       149 ~~~~lVVDiG~~~t~v~~v~~g~  171 (377)
                      ..+|+.||+|+.+|+|+||.+|.
T Consensus       129 ~dsci~VD~GSTTtDIIPi~~ge  151 (330)
T COG1548         129 KDSCILVDMGSTTTDIIPIKDGE  151 (330)
T ss_pred             CCceEEEecCCcccceEeecchh
Confidence            35799999999999999999996

>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase)

Probab=95.01  E-value=0.9  Score=42.21  Aligned_cols=52  Identities=17%  Similarity=0.170  Sum_probs=38.2

Q ss_pred             HHhhhcccCCCCeEEEechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCceecc
Q 017125          121 MTQIMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP  174 (377)
Q Consensus       121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~  174 (377)
                      +.+.+-+.+++| |++.++.-+++++-       +..+.++|.+|.+. ....|.+|+++.
T Consensus        89 l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~  147 (318)
T TIGR00744        89 LKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRH  147 (318)
T ss_pred             HHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEee
Confidence            445555677887 77888888887632       45789999999764 677788998764

This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.

>PRK10854 exopolyphosphatase; Provisional

Probab=94.80  E-value=0.11  Score=51.84  Aligned_cols=83  Identities=12%  Similarity=0.105  Sum_probs=53.2

Q ss_pred             EEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEec---hhhhhhhhc-----CCceEEEEeCCCCceEEEEeeCceecccc
Q 017125          105 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI---QAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYALPHA  176 (377)
Q Consensus       105 vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~~~-----g~~~~lVVDiG~~~t~v~~v~~g~~~~~~  176 (377)
                      .++....+-.-.++..+++.+.+..|++. .+++   ++-+...+.     ...+++|||||+++|.++.+-+|.+.  .
T Consensus        85 ~~vATsAlReA~N~~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~--~  161 (513)
T PRK10854         85 CIVGTHTLRQALNATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI--L  161 (513)
T ss_pred             EEEehHHHHcCcCHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCee--E
Confidence            34444444455667778888877777763 2332   332222211     12368999999999999999998766  4


Q ss_pred             eEEecccHHHHHHH
Q 017125          177 ILRLDLAGRDLTDA  190 (377)
Q Consensus       177 ~~~~~~GG~~i~~~  190 (377)
                      ....++|.-.+++.
T Consensus       162 ~~S~~lG~vrl~e~  175 (513)
T PRK10854        162 VESRRMGCVSFAQL  175 (513)
T ss_pred             eEEEecceeeHHhh
Confidence            45668887666553

>PRK09557 fructokinase; Reviewed

Probab=94.61  E-value=1.2  Score=41.00  Aligned_cols=53  Identities=13%  Similarity=0.033  Sum_probs=35.8

Q ss_pred             HHhhhcccCCCCeEEEechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCceeccc
Q 017125          121 MTQIMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH  175 (377)
Q Consensus       121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~~  175 (377)
                      +.+.+-+.+++| |.+.++.-|++++-       +..+.+.+.+|. .+-...|.||+++..
T Consensus        88 l~~~l~~~~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igt-GiG~giv~~G~l~~G  147 (301)
T PRK09557         88 LDKDLSARLNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGT-GCGAGVAINGRVHIG  147 (301)
T ss_pred             HHHHHHHHHCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEcc-ceEEEEEECCEEEec
Confidence            334444566887 77888888887653       235677888874 466777789987643

>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]

Probab=94.53  E-value=0.09  Score=51.68  Aligned_cols=80  Identities=19%  Similarity=0.192  Sum_probs=50.7

Q ss_pred             CCCCCHHhHHHHHhhhcccCCCCe--EEEechhhhhhhhc----C-CceEEEEeCCCCceEEEEeeCceecccceEEecc
Q 017125          110 APLNPKANREKMTQIMFETFNTPA--MYVAIQAVLSLYAS----G-RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL  182 (377)
Q Consensus       110 ~~~~~~~~~~~l~~~lfe~~~~~~--v~~~~~~~~a~~~~----g-~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~  182 (377)
                      ..+-.-.+...+.+.+.+.+|++.  +.=-.++-++.++.    + ...++|+|+|+++|.++-+-+..+.  ....+|+
T Consensus        82 sA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~--~~~Sl~~  159 (492)
T COG0248          82 SALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIG--LLISLPL  159 (492)
T ss_pred             HHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccc--eeEEeec
Confidence            333334455556666667777662  22233444443332    3 5689999999999999988877766  5567888


Q ss_pred             cHHHHHHHH
Q 017125          183 AGRDLTDAL  191 (377)
Q Consensus       183 GG~~i~~~l  191 (377)
                      |.-.+++.+
T Consensus       160 G~v~lt~~~  168 (492)
T COG0248         160 GCVRLTERF  168 (492)
T ss_pred             ceEEeehhh
Confidence            865544443

>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein

Probab=94.44  E-value=0.29  Score=45.27  Aligned_cols=28  Identities=18%  Similarity=0.356  Sum_probs=25.1

Q ss_pred             cCCceEEEEeCCCCceEEEEeeCceecc
Q 017125          147 SGRTTGIVLDSGDGVSHTVPIYEGYALP  174 (377)
Q Consensus       147 ~g~~~~lVVDiG~~~t~v~~v~~g~~~~  174 (377)
                      ....+++.+|||+++|+|+||.+|.+..
T Consensus       125 ~~~~~~I~~DmGGTTtDi~~i~~G~p~~  152 (318)
T TIGR03123       125 KRIPECLFVDMGSTTTDIIPIIDGEVAA  152 (318)
T ss_pred             hcCCCEEEEEcCccceeeEEecCCEeee
Confidence            3467899999999999999999999884

This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.

>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]

Probab=94.32  E-value=0.25  Score=45.15  Aligned_cols=156  Identities=17%  Similarity=0.217  Sum_probs=85.9

Q ss_pred             CCCCCCEEEeCCCCceEEeeeCCC---------CCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeecccc
Q 017125            4 AEDIQPLVCDNGTGMVKAGFAGDD---------APRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIE   74 (377)
Q Consensus         4 ~~~~~~viiD~Gs~~~k~G~~~~~---------~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~   74 (377)
                      .++-..|.||+|++++.+=|+--+         .|++.|-     .++..                   +...-+..|+.
T Consensus         2 te~ilSVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii-----~kdi~-------------------~rS~i~FTPv~   57 (473)
T COG4819           2 TEQILSVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEII-----KKDIS-------------------WRSPIFFTPVD   57 (473)
T ss_pred             cceeeeeeeeccCceeeeeeeeeEEeecccccccceEEEE-----eccee-------------------eecceeeeeec
Confidence            466778999999999999887421         2222211     01100                   01112345666


Q ss_pred             CCccCCHHHHHHHHHHhcccccccCCCC--C-cEEEeeCCCCCHHhHHHHHhhhcccCCCCeEE---EechhhhhhhhcC
Q 017125           75 HGIVNNWDDMEKIWHHTFYNELRVAPEE--H-PVLLTEAPLNPKANREKMTQIMFETFNTPAMY---VAIQAVLSLYASG  148 (377)
Q Consensus        75 ~g~i~d~~~~~~~~~~~~~~~L~~~~~~--~-~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~---~~~~~~~a~~~~g  148 (377)
                      ..--.|.++++.+...=| ..-++.|+.  . .++++-...-.+.-|. .+..+-..+|-=.|.   -.-+++.|.-+.|
T Consensus        58 ~q~~id~~alk~~v~eeY-~~AGi~pesi~sGAvIITGEtArk~NA~~-vl~alSg~aGDFVVAtAGPdLESiIAGkGaG  135 (473)
T COG4819          58 KQGGIDEAALKKLVLEEY-QAAGIAPESIDSGAVIITGETARKRNARP-VLMALSGSAGDFVVATAGPDLESIIAGKGAG  135 (473)
T ss_pred             ccCCccHHHHHHHHHHHH-HHcCCChhccccccEEEeccccccccchH-HHHHhhhcccceEEEecCCCHHHHhccCCcc
Confidence            655567888888877765 566676653  3 3555544333332222 222332222211111   1123333333333


Q ss_pred             C--------ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHH
Q 017125          149 R--------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL  187 (377)
Q Consensus       149 ~--------~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i  187 (377)
                      .        +..+=+|||+++|..+-+-.|.+.  ...-+++||+.+
T Consensus       136 A~t~Seqr~t~v~NlDIGGGTtN~slFD~Gkv~--dTaCLdiGGRLi  180 (473)
T COG4819         136 AQTLSEQRLTRVLNLDIGGGTTNYSLFDAGKVS--DTACLDIGGRLI  180 (473)
T ss_pred             ccchhhhhceEEEEEeccCCccceeeecccccc--cceeeecCcEEE
Confidence            2        233457999999999999889888  445578999754

>PRK03011 butyrate kinase; Provisional

Probab=94.04  E-value=5.3  Score=37.84  Aligned_cols=48  Identities=19%  Similarity=0.298  Sum_probs=33.3

Q ss_pred             cCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhh
Q 017125          297 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL  348 (377)
Q Consensus       297 ~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~  348 (377)
                      +-|||+||.+.-+-|.+++++.+..+.    .+.+....+...+.-.||..+
T Consensus       297 D~IVlgGGI~~~~~l~~~I~~~l~~~~----pv~i~p~~~e~~A~a~GA~rv  344 (358)
T PRK03011        297 DAIVLTGGLAYSKRLVERIKERVSFIA----PVIVYPGEDEMEALAEGALRV  344 (358)
T ss_pred             CEEEEeCccccCHHHHHHHHHHHHhhC----CeEEEeCCCHHHHHHHHHHHH
Confidence            579999999987777788887777653    467766655545555665443

>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type

Probab=93.78  E-value=0.94  Score=41.16  Aligned_cols=68  Identities=16%  Similarity=0.025  Sum_probs=43.3

Q ss_pred             ChHHHHHHHHhcCCh-hHHHHhhcCceeccC-CcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhh
Q 017125          275 GIHETTYNSIMKCDV-DIRKDLYGNIVLSGG-STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSI  347 (377)
Q Consensus       275 ~l~~~I~~~i~~~~~-~~~~~l~~nIvl~GG-~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi  347 (377)
                      +|..+|.+.|-.+.. .-+..-.++|+++|| .+..|.+.+++...+.-.     ..++.-+.+..|..-+||.+
T Consensus       209 SLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~-----~~~~ifp~h~~y~gAlGAaL  278 (279)
T TIGR00555       209 SLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFW-----SKKALFLEHEGYSGAIGALL  278 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhc-----CceEEEECCcchHHHhhhcc
Confidence            344455554433321 113344689999999 788999999988776422     25666666677777777764

This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).

>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3

Probab=92.39  E-value=0.13  Score=47.32  Aligned_cols=29  Identities=24%  Similarity=0.313  Sum_probs=21.9

Q ss_pred             hcCCceEEEEeCCCCceEEEEeeCceecc
Q 017125          146 ASGRTTGIVLDSGDGVSHTVPIYEGYALP  174 (377)
Q Consensus       146 ~~g~~~~lVVDiG~~~t~v~~v~~g~~~~  174 (377)
                      ..+..+++++|||+++|+|++|.||.+..
T Consensus        73 ~~g~~~~i~vDmGGTTtDi~~i~~G~p~~  101 (290)
T PF01968_consen   73 LTGLENAIVVDMGGTTTDIALIKDGRPEI  101 (290)
T ss_dssp             -HT-SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred             cCCCCCEEEEeCCCCEEEEEEEECCeeec
Confidence            45788999999999999999999999863

5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.

>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3

Probab=91.57  E-value=0.38  Score=44.05  Aligned_cols=83  Identities=18%  Similarity=0.248  Sum_probs=55.1

Q ss_pred             EEeeCCCCCHHhHHHHHhhhcccCCCCeEEEec---hhhhhh----hhc-CCceEEEEeCCCCceEEEEeeCceecccce
Q 017125          106 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAI---QAVLSL----YAS-GRTTGIVLDSGDGVSHTVPIYEGYALPHAI  177 (377)
Q Consensus       106 vl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~----~~~-g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~  177 (377)
                      ++....+-.-.++..+++.+.+..|++-= +++   ++.++.    .+. ...+++|+|+|+++|.++.+.+|.+.  ..
T Consensus        61 ~vATsA~R~A~N~~~~~~~i~~~tGi~i~-iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~  137 (285)
T PF02541_consen   61 AVATSALREAKNSDEFLDRIKKETGIDIE-IISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVV--FS  137 (285)
T ss_dssp             EEEEHHHHHSTTHHHHHHHHHHHHSS-EE-EE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEE--EE
T ss_pred             EEhhHHHHhCcCHHHHHHHHHHHhCCceE-EecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeee--Ee
Confidence            44444444456667777788788887632 332   222221    223 56789999999999999999999988  66


Q ss_pred             EEecccHHHHHHHH
Q 017125          178 LRLDLAGRDLTDAL  191 (377)
Q Consensus       178 ~~~~~GG~~i~~~l  191 (377)
                      ..+|+|.-.+++.+
T Consensus       138 ~Sl~lG~vrl~e~~  151 (285)
T PF02541_consen  138 QSLPLGAVRLTERF  151 (285)
T ss_dssp             EEES--HHHHHHHH
T ss_pred             eeeehHHHHHHHHH
Confidence            78999998777666

6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.

>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length

Probab=90.09  E-value=1.4  Score=41.02  Aligned_cols=50  Identities=22%  Similarity=0.331  Sum_probs=37.4

Q ss_pred             CceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC---CCccccchhhhhhhcc
Q 017125          298 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASL  351 (377)
Q Consensus       298 nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~---~~~~~~w~Gasi~a~l  351 (377)
                      -|+|+|-.+.+|.|.+.+...|...++-    ++....   -..-.+-.|++++|+-
T Consensus       263 ~IilSGr~~~~~~~~~~l~~~l~~~~~~----~v~~l~~~~~~aKeaA~GaAiIA~g  315 (343)
T PF07318_consen  263 EIILSGRFSRIPEFRKKLEDRLEDYFPV----KVRKLEGLARKAKEAAQGAAIIANG  315 (343)
T ss_pred             EEEEeccccccHHHHHHHHHHHHhhccc----ceeecccccccchhhhhhHHHHhhh
Confidence            4999999999999999999999988762    332221   1123478899998874

The function of this family is unknown.

>COG2441 Predicted butyrate kinase [Energy production and conversion]

Probab=90.06  E-value=0.22  Score=44.36  Aligned_cols=73  Identities=15%  Similarity=0.203  Sum_probs=44.9

Q ss_pred             hHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCC-Cce--EEEECCCCCccccchhhhhhhcc
Q 017125          276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPS-SMK--IKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       276 l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~-~~~--v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      +.|-|.+.+...-.+.++.   -|.+.|-.++||-|-.-+++.|+..+.. ...  ++.....-.--.+-.||+++|+-
T Consensus       257 l~e~vvK~v~tllps~~pd---~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAna  332 (374)
T COG2441         257 LIEGVVKDVFTLLPSTYPD---AIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANA  332 (374)
T ss_pred             HHHHHHHHHHHhccccCcc---eEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhh
Confidence            5566666665553333333   3999999999998887777777765532 222  33322222223467788888875

>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]

Probab=88.57  E-value=6.3  Score=35.20  Aligned_cols=18  Identities=17%  Similarity=0.137  Sum_probs=15.8

Q ss_pred             CEEEeCCCCceEEeeeCC
Q 017125            9 PLVCDNGTGMVKAGFAGD   26 (377)
Q Consensus         9 ~viiD~Gs~~~k~G~~~~   26 (377)
                      -++||+|-++++.|+..+
T Consensus         2 ~L~iDiGNT~~~~a~~~~   19 (251)
T COG1521           2 LLLIDIGNTRIVFALYEG   19 (251)
T ss_pred             eEEEEeCCCeEEEEEecC
Confidence            379999999999998874

>PRK13324 pantothenate kinase; Reviewed

Probab=86.08  E-value=14  Score=33.22  Aligned_cols=18  Identities=28%  Similarity=0.379  Sum_probs=15.7

Q ss_pred             CEEEeCCCCceEEeeeCC
Q 017125            9 PLVCDNGTGMVKAGFAGD   26 (377)
Q Consensus         9 ~viiD~Gs~~~k~G~~~~   26 (377)
                      .+.||+|-+++|.|+..+
T Consensus         2 iL~iDiGNT~ik~gl~~~   19 (258)
T PRK13324          2 LLVMDMGNSHIHIGVFDG   19 (258)
T ss_pred             EEEEEeCCCceEEEEEEC
Confidence            478999999999998854

>PRK13321 pantothenate kinase; Reviewed

Probab=85.79  E-value=7.2  Score=35.04  Aligned_cols=19  Identities=32%  Similarity=0.407  Sum_probs=16.3

Q ss_pred             CEEEeCCCCceEEeeeCCC
Q 017125            9 PLVCDNGTGMVKAGFAGDD   27 (377)
Q Consensus         9 ~viiD~Gs~~~k~G~~~~~   27 (377)
                      .+.||+|.+++|+|+..++
T Consensus         2 iL~IDIGnT~ik~gl~~~~   20 (256)
T PRK13321          2 LLLIDVGNTNIKLGVFDGD   20 (256)
T ss_pred             EEEEEECCCeEEEEEEECC
Confidence            3789999999999998654

>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway

Probab=85.04  E-value=7  Score=33.85  Aligned_cols=18  Identities=28%  Similarity=0.348  Sum_probs=15.1

Q ss_pred             EEEeCCCCceEEeeeCCC
Q 017125           10 LVCDNGTGMVKAGFAGDD   27 (377)
Q Consensus        10 viiD~Gs~~~k~G~~~~~   27 (377)
                      ++||+|-+++|+|+..++
T Consensus         2 L~iDiGNT~ik~~~~~~~   19 (206)
T PF03309_consen    2 LLIDIGNTRIKWALFDGD   19 (206)
T ss_dssp             EEEEE-SSEEEEEEEETT
T ss_pred             EEEEECCCeEEEEEEECC
Confidence            689999999999998665

CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.

>TIGR02707 butyr_kinase butyrate kinase

Probab=84.52  E-value=37  Score=32.12  Aligned_cols=26  Identities=23%  Similarity=0.250  Sum_probs=21.1

Q ss_pred             eEEEEeCCCCceEEEEeeCceecccce
Q 017125          151 TGIVLDSGDGVSHTVPIYEGYALPHAI  177 (377)
Q Consensus       151 ~~lVVDiG~~~t~v~~v~~g~~~~~~~  177 (377)
                      +.+++.+|.+.. ++.|.||+++..+.
T Consensus       175 ~~I~~hLGtGig-~~ai~~Gk~vdgs~  200 (351)
T TIGR02707       175 NLIVAHMGGGIS-VAAHRKGRVIDVNN  200 (351)
T ss_pred             CEEEEEeCCCce-eeeEECCEEEEcCC
Confidence            789999999755 88999999875443

This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.

>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]

Probab=82.69  E-value=2  Score=37.37  Aligned_cols=53  Identities=19%  Similarity=0.155  Sum_probs=35.2

Q ss_pred             cCCceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCC
Q 017125          147 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY  200 (377)
Q Consensus       147 ~g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~  200 (377)
                      +|.++..|+-+.++.|.|+++.+.+--- .-.++++.=-.+.+++.+.|.-.+.
T Consensus       121 TgA~nPvvLYvSGGNTQvIAYse~rYrI-FGETlDIAvGNClDRFAR~lklsN~  173 (336)
T KOG2708|consen  121 TGAQNPVVLYVSGGNTQVIAYSEKRYRI-FGETLDIAVGNCLDRFARVLKLSND  173 (336)
T ss_pred             ccCCCCEEEEEeCCceEEEEEccceeee-ecceehhhhhhhHHHHHHHhcCCCC
Confidence            4567888888889999999998874321 2234555544566677777754443

>PRK13318 pantothenate kinase; Reviewed

Probab=82.50  E-value=21  Score=32.02  Aligned_cols=18  Identities=22%  Similarity=0.163  Sum_probs=15.7

Q ss_pred             CEEEeCCCCceEEeeeCC
Q 017125            9 PLVCDNGTGMVKAGFAGD   26 (377)
Q Consensus         9 ~viiD~Gs~~~k~G~~~~   26 (377)
                      .+.||+|.+++|+|+..+
T Consensus         2 iL~IDIGnT~iK~al~d~   19 (258)
T PRK13318          2 LLAIDVGNTNTVFGLYEG   19 (258)
T ss_pred             EEEEEECCCcEEEEEEEC
Confidence            478999999999999863

>TIGR00671 baf pantothenate kinase, type III

Probab=81.95  E-value=11  Score=33.54  Aligned_cols=18  Identities=17%  Similarity=0.289  Sum_probs=15.6

Q ss_pred             EEEeCCCCceEEeeeCCC
Q 017125           10 LVCDNGTGMVKAGFAGDD   27 (377)
Q Consensus        10 viiD~Gs~~~k~G~~~~~   27 (377)
                      ++||+|-+++|+|+..++
T Consensus         2 L~iDiGNT~i~~g~~~~~   19 (243)
T TIGR00671         2 LLIDVGNTRIVFALNSGN   19 (243)
T ss_pred             EEEEECCCcEEEEEEECC
Confidence            689999999999988654

This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	377
1nlv_A	375	Crystal Structure Of Dictyostelium Discoideum Actin		0.0
3chw_A	375	Complex Of Dictyostelium Discoideum Actin With Prof		0.0
3ci5_A	375	Complex Of Phosphorylated Dictyostelium Discoideum		0.0
1dej_A	375	Crystal Structure Of A DictyosteliumTETRAHYMENA CHI		0.0
1c0g_A	375	Crystal Structure Of 1:1 Complex Between Gelsolin S		0.0
4efh_A	375	Acanthamoeba Actin Complex With Spir Domain D Lengt		0.0
3a5l_C	375	Crystal Structure Of A Dictyostelium P109a Mg2+-Act		0.0
3a5m_C	375	Crystal Structure Of A Dictyostelium P109i Mg2+-Act		0.0
3u4l_A	375	Cryocooled Bovine Profilin:actin Crystal Structure		0.0
2oan_A	375	Structure Of Oxidized Beta-Actin Length = 375		0.0
3byh_A	374	Model Of Actin-Fimbrin Abd2 Complex Length = 374		0.0
1d4x_A	375	Crystal Structure Of Caenorhabditis Elegans Mg-Atp		0.0
2btf_A	375	The Structure Of Crystalline Profilin-Beta-Actin Le		0.0
2hf3_A	374	Crystal Structure Of Monomeric Actin In The Adp Bou		0.0
3eks_A	375	Crystal Structure Of Monomeric Actin Bound To Cytoc		0.0
1ijj_A	377	The X-Ray Crystal Structure Of The Complex Between		0.0
1kxp_A	375	Crystal Structure Of Human Vitamin D-binding Protei		0.0
4b1v_A	376	Structure Of The Phactr1 Rpel-N Domain Bound To G-A		0.0
1eqy_A	377	Complex Between Rabbit Muscle Alpha-Actin: Human Ge		0.0
1c0f_A	368	Crystal Structure Of Dictyostelium Caatp-Actin In C		0.0
1t44_A	370	Structural Basis Of Actin Sequestration By Thymosin		0.0
3g37_O	376	Cryo-Em Structure Of Actin Filament In The Presence		0.0
1qz5_A	375	Structure Of Rabbit Actin In Complex With Kabiramid		0.0
2gwj_A	371	Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form		0.0
3w3d_A	374	Crystal Structure Of Smooth Muscle G Actin Dnase I		0.0
1lcu_A	371	Polylysine Induces An Antiparallel Actin Dimer That		0.0
2w49_D	372	Isometrically Contracting Insect Asynchronous Fligh		0.0
3b63_L	365	Actin Filament Model In The Extended Form Of Acroms		0.0
3m6g_A	371	Crystal Structure Of Actin In Complex With Lobophor		0.0
1atn_A	373	Atomic Structure Of The Actin:dnase I Complex Lengt		0.0
3b63_E	365	Actin Filament Model In The Extended Form Of Acroms		0.0
1yag_A	375	Structure Of The Yeast Actin-human Gelsolin Segment		0.0
3b63_B	364	Actin Filament Model In The Extended Form Of Acroms		0.0
1yvn_A	375	The Yeast Actin Val 159 Asn Mutant Complex With Hum		0.0
3b63_D	357	Actin Filament Model In The Extended Form Of Acroms		0.0
3b63_C	365	Actin Filament Model In The Extended Form Of Acroms		0.0
3b63_F	357	Actin Filament Model In The Extended Form Of Acroms		0.0
3b63_A	365	Actin Filament Model In The Extended Form Of Acroms		0.0
3mn5_A	359	Structures Of Actin-Bound Wh2 Domains Of Spire And		0.0
2p9k_B	394	Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta		1e-103
1k8k_B	394	Crystal Structure Of Arp23 COMPLEX Length = 394		1e-102
1k8k_A	418	Crystal Structure Of Arp23 COMPLEX Length = 418		9e-62
3dwl_A	427	Crystal Structure Of Fission Yeast Arp2/3 Complex L		4e-60
3qb0_A	498	Crystal Structure Of Actin-Related Protein Arp4 Fro		5e-20
4i6m_A	477	Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex		1e-13
4fo0_A	593	Human Actin-Related Protein Arp8 In Its Atp-Bound S		6e-07
4i6m_B	439	Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex		3e-05

>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/375 (91%), Positives = 362/375 (96%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQS
Sbjct: 1   DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 123 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFNTPAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSY 242
           AGRDLTD +MKILTERGYSFTTTAEREIVRD+KEKLAY+ALD+EQE+ TA  SSA+EKSY
Sbjct: 181 AGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMATAASSSALEKSY 240
Query: 243 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
           ELPDGQVITIG ERFRCPE LFQPS +GMESAGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 300
Query: 303 GGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
           GG+TMFPGIADRM+KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K 
Sbjct: 301 GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 360
Query: 363 EYDESGPSIVHRKCF 377
           EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375

>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375

Iteration: 1
 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/375 (90%), Positives = 361/375 (96%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQS
Sbjct: 1   DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIE GIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 123 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFNTPAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSY 242
           AGRDLTD +MKILTERGYSFTTTAEREIVRD+KEKLAY+ALD+E E++TA  SSA+EKSY
Sbjct: 181 AGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSY 240
Query: 243 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
           ELPDGQVITIG ERFRCPE LFQPS +GMESAGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 300
Query: 303 GGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
           GG+TMFPGIADRM+KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K 
Sbjct: 301 GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 360
Query: 363 EYDESGPSIVHRKCF 377
           EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375

>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375

Iteration: 1
 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/375 (90%), Positives = 360/375 (96%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+ VGDEAQS
Sbjct: 1   DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSXVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIE GIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 123 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFNTPAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSY 242
           AGRDLTD +MKILTERGYSFTTTAEREIVRD+KEKLAY+ALD+E E++TA  SSA+EKSY
Sbjct: 181 AGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSY 240
Query: 243 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
           ELPDGQVITIG ERFRCPE LFQPS +GMESAGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 300
Query: 303 GGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
           GG+TMFPGIADRM+KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K 
Sbjct: 301 GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 360
Query: 363 EYDESGPSIVHRKCF 377
           EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375

>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/375 (90%), Positives = 360/375 (96%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQS
Sbjct: 1   DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIE GIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 123 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFNTPAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSY 242
           AGRDLTD +MKILTERGYSFTTTAEREIVRD+KEKLAY+ALD+E E++  K SSA+EKSY
Sbjct: 181 AGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMKAYKESSALEKSY 240
Query: 243 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
           ELPDGQVITIG ERFRCPE LFQPS +GMESAGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 300
Query: 303 GGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
           GG+TMFPGIADRM+KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K 
Sbjct: 301 GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKH 360
Query: 363 EYDESGPSIVHRKCF 377
           EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375

>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375

Iteration: 1
 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/375 (90%), Positives = 359/375 (95%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQS
Sbjct: 1   DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIE GIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 123 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFNTPAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSY 242
           AGRDLTD +MKILTERGYSFTTTAEREIVRD+KEKLAY+ALD+E E++    SSA+EKSY
Sbjct: 181 AGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMKAYASSSALEKSY 240
Query: 243 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
           ELPDGQVITIG ERFRCPE LFQPS +GMESAGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 300
Query: 303 GGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
           GG+TMFPGIADRM+KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K 
Sbjct: 301 GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKH 360
Query: 363 EYDESGPSIVHRKCF 377
           EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375

>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375

Iteration: 1
 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/374 (90%), Positives = 358/374 (95%)
Query: 4   AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
            +++Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQSK
Sbjct: 2   GDEVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSK 61
Query: 64  RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 123
           RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62  RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 124 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 183
           IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAILRLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 184 GRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYE 243
           GRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA  SSA+EKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMHTAASSSALEKSYE 241
Query: 244 LPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSG 303
           LPDGQVITIG ERFR PE LFQPS +GMESAGIHETTYNSIMKCDVDIRKDLYGN+VLSG
Sbjct: 242 LPDGQVITIGNERFRAPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSG 301
Query: 304 GSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAE 363
           G+TMFPGIADRM KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K E
Sbjct: 302 GTTMFPGIADRMQKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEE 361
Query: 364 YDESGPSIVHRKCF 377
           YDESGPSIVHRKCF
Sbjct: 362 YDESGPSIVHRKCF 375

>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/375 (89%), Positives = 357/375 (95%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQS
Sbjct: 1   DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIE GIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEA LNPKANREKMT
Sbjct: 61  KRGILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAALNPKANREKMT 120
Query: 123 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFNTPAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSY 242
           AGRDLTD +MKILTERGYSFTTTA   IVRD+KEKLAY+ALD+E E++TA  SSA+EKSY
Sbjct: 181 AGRDLTDYMMKILTERGYSFTTTAAAAIVRDIKEKLAYVALDFEAEMQTAASSSALEKSY 240
Query: 243 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
           ELPDGQVITIG ERFRCPE LFQPS +GMESAGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 300
Query: 303 GGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
           GG+TMFPGIADRM+KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K 
Sbjct: 301 GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 360
Query: 363 EYDESGPSIVHRKCF 377
           EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375

>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/375 (89%), Positives = 357/375 (95%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQS
Sbjct: 1   DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIE GIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEA LNPKANREKMT
Sbjct: 61  KRGILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAILNPKANREKMT 120
Query: 123 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFNTPAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSY 242
           AGRDLTD +MKILTERGYSFTTTA   IVRD+KEKLAY+ALD+E E++TA  SSA+EKSY
Sbjct: 181 AGRDLTDYMMKILTERGYSFTTTAAAAIVRDIKEKLAYVALDFEAEMQTAASSSALEKSY 240
Query: 243 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
           ELPDGQVITIG ERFRCPE LFQPS +GMESAGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 300
Query: 303 GGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
           GG+TMFPGIADRM+KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K 
Sbjct: 301 GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 360
Query: 363 EYDESGPSIVHRKCF 377
           EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375

>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375

Iteration: 1
 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/373 (89%), Positives = 354/373 (94%)
Query: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
           +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 3   DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 62
Query: 65  GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
           GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 63  GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 122
Query: 125 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           MFETFNTPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAG
Sbjct: 123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAG 182
Query: 185 RDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYEL 244
           RDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA  SS++EKSYEL
Sbjct: 183 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 242
Query: 245 PDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
           PDGQVITIG ERFRCPE LFQPS +GMES GIHETT+NSIMKCDVDIRKDLY N VLSGG
Sbjct: 243 PDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGG 302
Query: 305 STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEY 364
           +TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EY
Sbjct: 303 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Query: 365 DESGPSIVHRKCF 377
           DESGPSIVHRKCF
Sbjct: 363 DESGPSIVHRKCF 375

>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375

Iteration: 1
 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/373 (89%), Positives = 354/373 (94%)
Query: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
           +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 3   DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 62
Query: 65  GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
           GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 63  GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 122
Query: 125 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           MFETFNTPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAG
Sbjct: 123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAG 182
Query: 185 RDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYEL 244
           RDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA  SS++EKSYEL
Sbjct: 183 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 242
Query: 245 PDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
           PDGQVITIG ERFRCPE LFQPS +GMES GIHETT+NSIMKCDVDIRKDLY N VLSGG
Sbjct: 243 PDGQVITIGNERFRCPEALFQPSFLGMESXGIHETTFNSIMKCDVDIRKDLYANTVLSGG 302
Query: 305 STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEY 364
           +TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EY
Sbjct: 303 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Query: 365 DESGPSIVHRKCF 377
           DESGPSIVHRKCF
Sbjct: 363 DESGPSIVHRKCF 375

>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374

Iteration: 1
 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/373 (89%), Positives = 354/373 (94%)
Query: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
           +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 2   DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 61
Query: 65  GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
           GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 62  GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 121
Query: 125 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           MFETFNTPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAG
Sbjct: 122 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAG 181
Query: 185 RDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYEL 244
           RDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA  SS++EKSYEL
Sbjct: 182 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 241
Query: 245 PDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
           PDGQVITIG ERFRCPE LFQPS +GMES GIHETT+NSIMKCDVDIRKDLY N VLSGG
Sbjct: 242 PDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGG 301
Query: 305 STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEY 364
           +TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EY
Sbjct: 302 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 361
Query: 365 DESGPSIVHRKCF 377
           DESGPSIVHRKCF
Sbjct: 362 DESGPSIVHRKCF 374

>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375

Iteration: 1
 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/373 (88%), Positives = 355/373 (95%)
Query: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
           +++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 3   DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 62
Query: 65  GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
           GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 63  GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 122
Query: 125 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           MFETFNTPAMYVAIQAVLSLYASGRTTG+VLDSGDGV+HTVPIYEGYALPHAILRLDLAG
Sbjct: 123 MFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAG 182
Query: 185 RDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYEL 244
           RDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA  SS++EKSYEL
Sbjct: 183 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 242
Query: 245 PDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
           PDGQVIT+G ERFRCPE +FQPS +GMESAGIHET+YNSIMKCD+DIRKDLY N VLSGG
Sbjct: 243 PDGQVITVGNERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGG 302
Query: 305 STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEY 364
           +TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EY
Sbjct: 303 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Query: 365 DESGPSIVHRKCF 377
           DESGPSIVHRKCF
Sbjct: 363 DESGPSIVHRKCF 375

>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375

Iteration: 1
 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/373 (89%), Positives = 353/373 (94%)
Query: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
           +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 3   DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 62
Query: 65  GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
           GILTLKYPIE GIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 63  GILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 122
Query: 125 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           MFETFNTPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAG
Sbjct: 123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAG 182
Query: 185 RDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYEL 244
           RDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA  SS++EKSYEL
Sbjct: 183 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 242
Query: 245 PDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
           PDGQVITIG ERFRCPE LFQPS +GMES GIHETT+NSIMKCDVDIRKDLY N VLSGG
Sbjct: 243 PDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGG 302
Query: 305 STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEY 364
           +TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EY
Sbjct: 303 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Query: 365 DESGPSIVHRKCF 377
           DESGPSIVHRKCF
Sbjct: 363 DESGPSIVHRKCF 375

>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374

Iteration: 1
 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/373 (89%), Positives = 352/373 (94%)
Query: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
           E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 2   EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 61
Query: 65  GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
           GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 62  GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 121
Query: 125 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG
Sbjct: 122 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 181
Query: 185 RDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYEL 244
           RDLTD LMKILTERGYSFTTT EREIVRD+KEKL Y+ALD+EQE+ TA  SS++EKSYEL
Sbjct: 182 RDLTDYLMKILTERGYSFTTTEEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 241
Query: 245 PDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
            DGQVITIG ERFRCPE LFQPS +GME+ GIHETTYNSIMKCDVDIRKDLY N VLSGG
Sbjct: 242 KDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 301
Query: 305 STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEY 364
           +TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EY
Sbjct: 302 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 361
Query: 365 DESGPSIVHRKCF 377
           DESGPSIVHRKCF
Sbjct: 362 DESGPSIVHRKCF 374

>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375

Iteration: 1
 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/373 (89%), Positives = 352/373 (94%)
Query: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
           E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 3   EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 62
Query: 65  GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
           GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 63  GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 122
Query: 125 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG
Sbjct: 123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 182
Query: 185 RDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYEL 244
           RDLTD LMKILTERGYSFTTT EREIVRD+KEKL Y+ALD+EQE+ TA  SS++EKSYEL
Sbjct: 183 RDLTDYLMKILTERGYSFTTTEEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 242
Query: 245 PDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
            DGQVITIG ERFRCPE LFQPS +GME+ GIHETTYNSIMKCDVDIRKDLY N VLSGG
Sbjct: 243 KDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 302
Query: 305 STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEY 364
           +TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EY
Sbjct: 303 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Query: 365 DESGPSIVHRKCF 377
           DESGPSIVHRKCF
Sbjct: 363 DESGPSIVHRKCF 375

>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377

Iteration: 1
 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/377 (87%), Positives = 352/377 (93%)
Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           M D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEA
Sbjct: 1   MCDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 60
Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREK 120
Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 180
Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL Y+ALD+E E+ TA  SS++EK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 240
Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIG ERFRCPE LFQPS IGMESAGIHETTYNSIMKCD+DIRKDLY N V
Sbjct: 241 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNV 300
Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           +SGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI 
Sbjct: 301 MSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIT 360
Query: 361 KAEYDESGPSIVHRKCF 377
           K EYDE+GPSIVHRKCF
Sbjct: 361 KQEYDEAGPSIVHRKCF 377

>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375

Iteration: 1
 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/375 (87%), Positives = 351/375 (93%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQS
Sbjct: 1   DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 120
Query: 123 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDL
Sbjct: 121 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSY 242
           AGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL Y+ALD+E E+ TA  SS++EKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 240
Query: 243 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
           ELPDGQVITIG ERFRCPE LFQPS IGMESAGIHETTYNSIMKCD+DIRKDLY N V+S
Sbjct: 241 ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMS 300
Query: 303 GGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
           GG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI K 
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 360
Query: 363 EYDESGPSIVHRKCF 377
           EYDE+GPSIVHRKCF
Sbjct: 361 EYDEAGPSIVHRKCF 375

>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376

Iteration: 1
 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/376 (87%), Positives = 351/376 (93%)
Query: 2   ADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQ 61
            D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQ
Sbjct: 1   CDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 62  SKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 121
           SKRGILTLKYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKM
Sbjct: 61  SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKM 120
Query: 122 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 181
           TQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLD
Sbjct: 121 TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 180
Query: 182 LAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKS 241
           LAGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL Y+ALD+E E+ TA  SS++EKS
Sbjct: 181 LAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKS 240
Query: 242 YELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVL 301
           YELPDGQVITIG ERFRCPE LFQPS IGMESAGIHETTYNSIMKCD+DIRKDLY N V+
Sbjct: 241 YELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVM 300
Query: 302 SGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAK 361
           SGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI K
Sbjct: 301 SGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITK 360
Query: 362 AEYDESGPSIVHRKCF 377
            EYDE+GPSIVHRKCF
Sbjct: 361 QEYDEAGPSIVHRKCF 376

>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377

Iteration: 1
 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/377 (87%), Positives = 351/377 (93%)
Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           M D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEA
Sbjct: 1   MCDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 60
Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIE GI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREK 120
Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 180
Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           DLAGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL Y+ALD+E E+ TA  SS++EK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 240
Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIG ERFRCPE LFQPS IGMESAGIHETTYNSIMKCD+DIRKDLY N V
Sbjct: 241 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNV 300
Query: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360
           +SGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI 
Sbjct: 301 MSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIT 360
Query: 361 KAEYDESGPSIVHRKCF 377
           K EYDE+GPSIVHRKCF
Sbjct: 361 KQEYDEAGPSIVHRKCF 377

>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368

Iteration: 1
 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/375 (89%), Positives = 354/375 (94%), Gaps = 7/375 (1%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTG       KD+YVGDEAQS
Sbjct: 1   DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTG-------KDSYVGDEAQS 53
Query: 63  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIE GIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 54  KRGILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 113
Query: 123 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFNTPAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDL
Sbjct: 114 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 173
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSY 242
           AGRDLTD +MKILTERGYSFTTTAEREIVRD+KEKLAY+ALD+E E++TA  SSA+EKSY
Sbjct: 174 AGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSY 233
Query: 243 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
           ELPDGQVITIG ERFRCPE LFQPS +GMESAGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct: 234 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 293
Query: 303 GGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
           GG+TMFPGIADRM+KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K 
Sbjct: 294 GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 353
Query: 363 EYDESGPSIVHRKCF 377
           EYDESGPSIVHRKCF
Sbjct: 354 EYDESGPSIVHRKCF 368

>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370

Iteration: 1
 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/368 (89%), Positives = 348/368 (94%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTL
Sbjct: 3   LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 62
Query: 70  KYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           KYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETF
Sbjct: 63  KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 122
Query: 130 NTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           N PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD
Sbjct: 123 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTD 182
Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQV 249
            LMKILTERGYSF TTAEREIVRD+KEKL Y+ALD+E E+ TA  SS++EKSYELPDGQV
Sbjct: 183 YLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQV 242
Query: 250 ITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           ITIG ERFRCPE LFQPS IGMESAGIHETTYNSIMKCD+DIRKDLY N V+SGG+TM+P
Sbjct: 243 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYP 302
Query: 310 GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 369
           GIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI K EYDE+GP
Sbjct: 303 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGP 362
Query: 370 SIVHRKCF 377
           SIVHRKCF
Sbjct: 363 SIVHRKCF 370

>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376

Iteration: 1
 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/375 (87%), Positives = 350/375 (93%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQS
Sbjct: 2   DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 61
Query: 63  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIE GI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMT
Sbjct: 62  KRGILTLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 121
Query: 123 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDL
Sbjct: 122 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL 181
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSY 242
           AGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL Y+ALD+E E+ TA  SS++EKSY
Sbjct: 182 AGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 241
Query: 243 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
           ELPDGQVITIG ERFRCPE LFQPS IGMESAGIHETTYNSIMKCD+DIRKDLY N V+S
Sbjct: 242 ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMS 301
Query: 303 GGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
           GG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI K 
Sbjct: 302 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 361
Query: 363 EYDESGPSIVHRKCF 377
           EYDE+GPSIVHRKCF
Sbjct: 362 EYDEAGPSIVHRKCF 376

>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375

Iteration: 1
 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/375 (87%), Positives = 350/375 (93%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQS
Sbjct: 1   DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIE GI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 120
Query: 123 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDL
Sbjct: 121 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSY 242
           AGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL Y+ALD+E E+ TA  SS++EKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 240
Query: 243 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
           ELPDGQVITIG ERFRCPE LFQPS IGMESAGIHETTYNSIMKCD+DIRKDLY N V+S
Sbjct: 241 ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMS 300
Query: 303 GGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
           GG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI K 
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 360
Query: 363 EYDESGPSIVHRKCF 377
           EYDE+GPSIVHRKCF
Sbjct: 361 EYDEAGPSIVHRKCF 375

>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371

Iteration: 1
 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/368 (88%), Positives = 347/368 (94%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTL
Sbjct: 4   LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 63
Query: 70  KYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           KYPIE GI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETF
Sbjct: 64  KYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 123
Query: 130 NTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           N PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD
Sbjct: 124 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTD 183
Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQV 249
            LMKILTERGYSF TTAEREIVRD+KEKL Y+ALD+E E+ TA  SS++EKSYELPDGQV
Sbjct: 184 YLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQV 243
Query: 250 ITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           ITIG ERFRCPE LFQPS IGMESAGIHETTYNSIMKCD+DIRKDLY N V+SGG+TM+P
Sbjct: 244 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYP 303
Query: 310 GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 369
           GIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI K EYDE+GP
Sbjct: 304 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGP 363
Query: 370 SIVHRKCF 377
           SIVHRKCF
Sbjct: 364 SIVHRKCF 371

>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374

Iteration: 1
 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/373 (87%), Positives = 349/373 (93%)
Query: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
           E+   LVCDNG+G+ KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 2   EETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 61
Query: 65  GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
           GILTLKYPIE GI+ NWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQI
Sbjct: 62  GILTLKYPIEXGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQI 121
Query: 125 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           MFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAG
Sbjct: 122 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG 181
Query: 185 RDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYEL 244
           RDLTD LMKILTERGYSF TTAEREIVRD+KEKL Y+ALD+E E+ TA  SS++EKSYEL
Sbjct: 182 RDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYEL 241
Query: 245 PDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
           PDGQVITIG ERFRCPE LFQPS IGMESAGIHETTYNSIMKCD+DIRKDLY N VLSGG
Sbjct: 242 PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGG 301
Query: 305 STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEY 364
           +TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EY
Sbjct: 302 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 361
Query: 365 DESGPSIVHRKCF 377
           DE+GPSIVHRKCF
Sbjct: 362 DEAGPSIVHRKCF 374

>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371

Iteration: 1
 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/368 (88%), Positives = 346/368 (94%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMV MGQ D+YVGDEAQSKRGILTL
Sbjct: 4   LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVVMGQGDSYVGDEAQSKRGILTL 63
Query: 70  KYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           KYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETF
Sbjct: 64  KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 123
Query: 130 NTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           N PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD
Sbjct: 124 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTD 183
Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQV 249
            LMKILTERGYSF TTAEREIVRD+KEKL Y+ALD+E E+ TA  SS++EKSYELPDGQV
Sbjct: 184 YLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQV 243
Query: 250 ITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           ITIG ERFRCPE LFQPS IGMESAGIHETTYNSIMKCD+DIRKDLY N V+SGG+TM+P
Sbjct: 244 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYP 303
Query: 310 GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 369
           GIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI K EYDE+GP
Sbjct: 304 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGP 363
Query: 370 SIVHRKCF 377
           SIVHRKCF
Sbjct: 364 SIVHRKCF 371

>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372

Iteration: 1
 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/372 (87%), Positives = 348/372 (93%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQS
Sbjct: 1   DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 120
Query: 123 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDL
Sbjct: 121 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSY 242
           AGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL Y+ALD+E E+ TA  SS++EKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 240
Query: 243 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
           ELPDGQVITIG ERFRCPE LFQPS IGMESAGIHETTYNSIMKCD+DIRKDLY N V+S
Sbjct: 241 ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMS 300
Query: 303 GGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
           GG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI K 
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 360
Query: 363 EYDESGPSIVHR 374
           EYDE+GPSIVHR
Sbjct: 361 EYDEAGPSIVHR 372

>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/363 (90%), Positives = 346/363 (95%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTL
Sbjct: 3   LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 62
Query: 70  KYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           KYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF
Sbjct: 63  KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 122
Query: 130 NTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           NTPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD
Sbjct: 123 NTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTD 182
Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQV 249
            LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA  SS++EKSYELPDGQV
Sbjct: 183 YLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQV 242
Query: 250 ITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           ITIG ERFRCPE LFQPS +GMES GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+P
Sbjct: 243 ITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYP 302
Query: 310 GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 369
           GIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGP
Sbjct: 303 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 362
Query: 370 SIV 372
           SIV
Sbjct: 363 SIV 365

>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371

Iteration: 1
 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/371 (87%), Positives = 347/371 (93%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQS
Sbjct: 1   DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 120
Query: 123 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDL
Sbjct: 121 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSY 242
           AGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL Y+ALD+E E+ TA  SS++EKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 240
Query: 243 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
           ELPDGQVITIG ERFRCPE LFQPS IGMESAGIHETTYNSIMKCD+DIRKDLY N V+S
Sbjct: 241 ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMS 300
Query: 303 GGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
           GG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI K 
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 360
Query: 363 EYDESGPSIVH 373
           EYDE+GPSIVH
Sbjct: 361 EYDEAGPSIVH 371

>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373

Iteration: 1
 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/372 (87%), Positives = 347/372 (93%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQS
Sbjct: 2   DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 61
Query: 63  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIE GI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMT
Sbjct: 62  KRGILTLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 121
Query: 123 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDL
Sbjct: 122 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL 181
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSY 242
           AGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL Y+ALD+E E+ TA  SS++EKSY
Sbjct: 182 AGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 241
Query: 243 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
           ELPDGQVITIG ERFRCPE LFQPS IGMESAGIHETTYNSIMKCD+DIRKDLY N V+S
Sbjct: 242 ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMS 301
Query: 303 GGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
           GG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI K 
Sbjct: 302 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 361
Query: 363 EYDESGPSIVHR 374
           EYDE+GPSIVHR
Sbjct: 362 EYDEAGPSIVHR 373

>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/363 (88%), Positives = 343/363 (94%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTL
Sbjct: 3   LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 62
Query: 70  KYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           KYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETF
Sbjct: 63  KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 122
Query: 130 NTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           N PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD
Sbjct: 123 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTD 182
Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQV 249
            LMKILTERGYSF TTAEREIVRD+KEKL Y+ALD+E E+ TA  SS++EKSYELPDGQV
Sbjct: 183 YLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQV 242
Query: 250 ITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           ITIG ERFRCPE LFQPS IGMESAGIHETTYNSIMKCD+DIRKDLY N V+SGG+TM+P
Sbjct: 243 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYP 302
Query: 310 GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 369
           GIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI K EYDE+GP
Sbjct: 303 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGP 362
Query: 370 SIV 372
           SIV
Sbjct: 363 SIV 365

>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375

Iteration: 1
 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/372 (84%), Positives = 350/372 (94%)
Query: 6   DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRG 65
           ++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKD+YVGDEAQSKRG
Sbjct: 4   EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRG 63
Query: 66  ILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 125
           ILTL+YPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPK+NREKMTQIM
Sbjct: 64  ILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIM 123
Query: 126 FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 185
           FETFN PA YV+IQAVLSLY+SGRTTGIVLDSGDGV+H VPIY G++LPHAILR+DLAGR
Sbjct: 124 FETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGR 183
Query: 186 DLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELP 245
           DLTD LMKIL+ERGYSF+TTAEREIVRD+KEKL Y+ALD+EQE++TA  SS++EKSYELP
Sbjct: 184 DLTDYLMKILSERGYSFSTTAEREIVRDIKEKLCYVALDFEQEMQTAAQSSSIEKSYELP 243
Query: 246 DGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGS 305
           DGQVITIG ERFR PE LF PS++G+ESAGI +TTYNSIMKCDVD+RK+LYGNIV+SGG+
Sbjct: 244 DGQVITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGT 303
Query: 306 TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYD 365
           TMFPGIA+RM KEITALAPSSMK+K++APPERKYSVWIGGSILASL+TFQQMWI+K EYD
Sbjct: 304 TMFPGIAERMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLTTFQQMWISKQEYD 363
Query: 366 ESGPSIVHRKCF 377
           ESGPSIVH KCF
Sbjct: 364 ESGPSIVHHKCF 375

>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364

Iteration: 1
 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/363 (88%), Positives = 342/363 (94%), Gaps = 1/363 (0%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTL
Sbjct: 3   LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 62
Query: 70  KYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           KYPIE GI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETF
Sbjct: 63  KYPIE-GIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 121
Query: 130 NTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           N PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD
Sbjct: 122 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTD 181
Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQV 249
            LMKILTERGYSF TTAEREIVRD+KEKL Y+ALD+E E+ TA  SS++EKSYELPDGQV
Sbjct: 182 YLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQV 241
Query: 250 ITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           ITIG ERFRCPE LFQPS IGMESAGIHETTYNSIMKCD+DIRKDLY N V+SGG+TM+P
Sbjct: 242 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYP 301
Query: 310 GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 369
           GIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI K EYDE+GP
Sbjct: 302 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGP 361
Query: 370 SIV 372
           SIV
Sbjct: 362 SIV 364

>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/372 (83%), Positives = 349/372 (93%)
Query: 6   DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRG 65
           ++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKD+YVGDEAQSKRG
Sbjct: 4   EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRG 63
Query: 66  ILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 125
           ILTL+YPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPK+NREKMTQIM
Sbjct: 64  ILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIM 123
Query: 126 FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 185
           FETFN PA YV+IQAVLSLY+SGRTTGIVLDSGDG +H VPIY G++LPHAILR+DLAGR
Sbjct: 124 FETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGNTHVVPIYAGFSLPHAILRIDLAGR 183
Query: 186 DLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELP 245
           DLTD LMKIL+ERGYSF+TTAEREIVRD+KEKL Y+ALD+EQE++TA  SS++EKSYELP
Sbjct: 184 DLTDYLMKILSERGYSFSTTAEREIVRDIKEKLCYVALDFEQEMQTAAQSSSIEKSYELP 243
Query: 246 DGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGS 305
           DGQVITIG ERFR PE LF PS++G+ESAGI +TTYNSIMKCDVD+RK+LYGNIV+SGG+
Sbjct: 244 DGQVITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGT 303
Query: 306 TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYD 365
           TMFPGIA+RM KEITALAPSSMK+K++APPERKYSVWIGGSILASL+TFQQMWI+K EYD
Sbjct: 304 TMFPGIAERMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLTTFQQMWISKQEYD 363
Query: 366 ESGPSIVHRKCF 377
           ESGPSIVH KCF
Sbjct: 364 ESGPSIVHHKCF 375

>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357

Iteration: 1
 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/357 (88%), Positives = 336/357 (94%), Gaps = 1/357 (0%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTL
Sbjct: 2   LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 61
Query: 70  KYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           KYPIE GI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETF
Sbjct: 62  KYPIE-GIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 120
Query: 130 NTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           N PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD
Sbjct: 121 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTD 180
Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQV 249
            LMKILTERGYSF TTAEREIVRD+KEKL Y+ALD+E E+ TA  SS++EKSYELPDGQV
Sbjct: 181 YLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQV 240
Query: 250 ITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           ITIG ERFRCPE LFQPS IGMESAGIHETTYNSIMKCD+DIRKDLY N V+SGG+TM+P
Sbjct: 241 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYP 300
Query: 310 GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDE 366
           GIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI K EYDE
Sbjct: 301 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 357

>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/363 (85%), Positives = 344/363 (94%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKD+YVGDEAQSKRGILTL
Sbjct: 3   LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTL 62
Query: 70  KYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           +YPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPK+NREKMTQIMFETF
Sbjct: 63  RYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFETF 122
Query: 130 NTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           N PA YV+IQAVLSLY+SGRTTGIVLDSGDGV+H VPIY G++LPHAILR+DLAGRDLTD
Sbjct: 123 NVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDLTD 182
Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQV 249
            LMKIL+ERGYSF+TTAEREIVRD+KEKL Y+ALD+EQE++TA  SS++EKSYELPDGQV
Sbjct: 183 YLMKILSERGYSFSTTAEREIVRDIKEKLCYVALDFEQEMQTAAQSSSIEKSYELPDGQV 242
Query: 250 ITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           ITIG ERFR PE LF PS++G+ESAGI +TTYNSIMKCDVD+RK+LYGNIV+SGG+TMFP
Sbjct: 243 ITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGTTMFP 302
Query: 310 GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 369
           GIA+RM KEITALAPSSMK+K++APPERKYSVWIGGSILASL+TFQQMWI+K EYDESGP
Sbjct: 303 GIAERMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLTTFQQMWISKQEYDESGP 362
Query: 370 SIV 372
           SIV
Sbjct: 363 SIV 365

>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357

Iteration: 1
 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/355 (88%), Positives = 334/355 (94%), Gaps = 1/355 (0%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTL
Sbjct: 4   LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 63
Query: 70  KYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           KYPIE GI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETF
Sbjct: 64  KYPIE-GIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 122
Query: 130 NTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           N PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD
Sbjct: 123 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTD 182
Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQV 249
            LMKILTERGYSF TTAEREIVRD+KEKL Y+ALD+E E+ TA  SS++EKSYELPDGQV
Sbjct: 183 YLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQV 242
Query: 250 ITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           ITIG ERFRCPE LFQPS IGMESAGIHETTYNSIMKCD+DIRKDLY N V+SGG+TM+P
Sbjct: 243 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYP 302
Query: 310 GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEY 364
           GIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI K EY
Sbjct: 303 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEY 357

>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/363 (84%), Positives = 343/363 (94%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKD+YVGDEAQSKRGILTL
Sbjct: 3   LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTL 62
Query: 70  KYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           +YPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPK+NREKMTQIMFETF
Sbjct: 63  RYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFETF 122
Query: 130 NTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           N PA YV+IQAVLSLY+SGRTTGIVLDSGDG +H VPIY G++LPHAILR+DLAGRDLTD
Sbjct: 123 NVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGNTHVVPIYAGFSLPHAILRIDLAGRDLTD 182
Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQV 249
            LMKIL+ERGYSF+TTAEREIVRD+KEKL Y+ALD+EQE++TA  SS++EKSYELPDGQV
Sbjct: 183 YLMKILSERGYSFSTTAEREIVRDIKEKLCYVALDFEQEMQTAAQSSSIEKSYELPDGQV 242
Query: 250 ITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           ITIG ERFR PE LF PS++G+ESAGI +TTYNSIMKCDVD+RK+LYGNIV+SGG+TMFP
Sbjct: 243 ITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGTTMFP 302
Query: 310 GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 369
           GIA+RM KEITALAPSSMK+K++APPERKYSVWIGGSILASL+TFQQMWI+K EYDESGP
Sbjct: 303 GIAERMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLTTFQQMWISKQEYDESGP 362
Query: 370 SIV 372
           SIV
Sbjct: 363 SIV 365

>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359

Iteration: 1
 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/375 (84%), Positives = 336/375 (89%), Gaps = 16/375 (4%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGR                VGDEAQS
Sbjct: 1   DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGR----------------VGDEAQS 44
Query: 63  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMT
Sbjct: 45  KRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 104
Query: 123 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDL
Sbjct: 105 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL 164
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSY 242
           AGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL Y+ALD+E E+ TA  SS++EKSY
Sbjct: 165 AGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 224
Query: 243 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
           ELPDGQVITIG ERFRCPE LFQPS IGMESAGIHETTYNSIMKCD+DIRKDLY N V+S
Sbjct: 225 ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMS 284
Query: 303 GGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
           GG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI K 
Sbjct: 285 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 344
Query: 363 EYDESGPSIVHRKCF 377
           EYDE+GPSIVHRKCF
Sbjct: 345 EYDEAGPSIVHRKCF 359

>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394

Iteration: 1
 Score =  371 bits (952), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/387 (45%), Positives = 255/387 (65%), Gaps = 15/387 (3%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEA 60
           D++  + +VCDNGTG VK G+AG + P  +FPS+VGRP  R T  +  +  KD  VGDEA
Sbjct: 2   DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPSLVGRPIIRSTTKVGNIEIKDLMVGDEA 61
Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANRE 119
              R +L + YP+E+GIV NWDDM+ +W +TF  E L +      +LLTE P+NP  NRE
Sbjct: 62  SELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNRE 121
Query: 120 KMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILR 179
           K+ ++MFET+    +YVAIQAVL+LYA G  TG+V+DSGDGV+H  P+YEG++LPH   R
Sbjct: 122 KIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRR 181
Query: 180 LDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVE 239
           LD+AGRD+T  L+K+L  RGY+F  +A+ E VR +KEKL Y+  + EQE + A  ++ + 
Sbjct: 182 LDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLV 241
Query: 240 KSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNI 299
           +SY LPDG++I +G ERF  PE LFQP +I +E  G+ E  +N+I   D+D R + Y +I
Sbjct: 242 ESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHI 301
Query: 300 VLSGGSTMFPGIADRMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSIL 348
           VLSGGSTM+PG+  R+ +E+  L             S  KI++  PP RK+ V++GG++L
Sbjct: 302 VLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVL 361
Query: 349 ASLSTFQ-QMWIAKAEYDESGPSIVHR 374
           A +   +   W+ + EY E G  ++ +
Sbjct: 362 ADIMKDKDNFWMTRQEYQEKGVRVLEK 388

>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394

Iteration: 1
 Score =  369 bits (948), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/387 (45%), Positives = 255/387 (65%), Gaps = 15/387 (3%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEA 60
           D++  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA
Sbjct: 2   DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEA 61
Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANRE 119
              R +L + YP+E+GIV NWDDM+ +W +TF  E L +      +LLTE P+NP  NRE
Sbjct: 62  SELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNRE 121
Query: 120 KMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILR 179
           K+ ++MFET+    +YVAIQAVL+LYA G  TG+V+DSGDGV+H  P+YEG++LPH   R
Sbjct: 122 KIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRR 181
Query: 180 LDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVE 239
           LD+AGRD+T  L+K+L  RGY+F  +A+ E VR +KEKL Y+  + EQE + A  ++ + 
Sbjct: 182 LDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLV 241
Query: 240 KSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNI 299
           +SY LPDG++I +G ERF  PE LFQP +I +E  G+ E  +N+I   D+D R + Y +I
Sbjct: 242 ESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHI 301
Query: 300 VLSGGSTMFPGIADRMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSIL 348
           VLSGGSTM+PG+  R+ +E+  L             S  KI++  PP RK+ V++GG++L
Sbjct: 302 VLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVL 361
Query: 349 ASLSTFQ-QMWIAKAEYDESGPSIVHR 374
           A +   +   W+ + EY E G  ++ +
Sbjct: 362 ADIMKDKDNFWMTRQEYQEKGVRVLEK 388

>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418

Iteration: 1
 Score =  234 bits (596), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 148/413 (35%), Positives = 212/413 (51%), Gaps = 53/413 (12%)
Query: 11  VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQS 62
           V D GTG  K G+AG+  P+ + PS         VG      VM G+   D ++GDEA  
Sbjct: 9   VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIE 68
Query: 63  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           K    T K+PI HGIV +WD ME+      +  LR  PE+H  LLTE PLN   NRE   
Sbjct: 69  KPTYAT-KWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTA 127
Query: 123 QIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALP 174
           +IMFE+FN P +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY + 
Sbjct: 128 EIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIG 187
Query: 175 HAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEL----- 229
             I  + +AGRD+T  + ++L +R          E  + +KE+ +Y+  D  +E      
Sbjct: 188 SCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDT 247
Query: 230 -------ETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGME-SAGIHETTY 281
                  +   I++  +K +       I +G ERF  PE+ F P     + +  I E   
Sbjct: 248 DGSKWIKQYTGINAISKKEFS------IDVGYERFLGPEIFFHPEFANPDFTQPISEVVD 301
Query: 282 NSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIT----------------ALAPS 325
             I  C +D+R+ LY NIVLSGGSTMF     R+ +++                  L P 
Sbjct: 302 EVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPK 361
Query: 326 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIV-HRKCF 377
            + ++V+    ++Y+VW GGS+LAS   F Q+   K +Y+E GPSI  H   F
Sbjct: 362 PIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVF 414

>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427

Iteration: 1
 Score =  228 bits (581), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 148/419 (35%), Positives = 215/419 (51%), Gaps = 59/419 (14%)
Query: 9   PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVG---------MGQK------- 52
           P++ DNGTG  K G+AG+DAP  VFP+++   R  G   G         M  K       
Sbjct: 7   PIIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSS 65
Query: 53  -------DAYVGDEAQSKRGI-LTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP 104
                  D ++G++A  K     +L YPI HG + NWD ME+ W  + +  LR  PE+H 
Sbjct: 66  KRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHY 125
Query: 105 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLD 156
            LLTE PLNP  NRE   +IMFE+FN   +Y+A+QAVL+L AS  +        TG V+D
Sbjct: 126 FLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVD 185
Query: 157 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY--SFTTTAEREIVRDM 214
           SGDGV+H +P+ EGY +  +I  + LAGRD+T  +  +L +R    S   TAER     +
Sbjct: 186 SGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----I 240
Query: 215 KEKLAYIALDYEQELET--AKISSAVEKSYELPDGQVITI--GAERFRCPEVLFQPSMIG 270
           KE+  Y+  D  +E      +    ++ + E   G   TI  G ERF  PE+ F P +  
Sbjct: 241 KEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIAS 300
Query: 271 MES-AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKE----------- 318
            +    + E   N +    +D+RK LY NIVLSGGST+F    +R+ ++           
Sbjct: 301 SDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHR 360
Query: 319 ---ITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHR 374
              ++      + + V++   ++ +VW GGS+LA    F      KA+Y+E G SI  R
Sbjct: 361 SEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419

>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 4/107 (3%)
Query: 265 QPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAP 324
           +P     E  G+ +  Y+SIM  DVD+R  L  N+VL+GG++  PG++DR+  E+  + P
Sbjct: 383 KPPKENNELIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILP 442
Query: 325 SSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWIAKAEYDESG 368
            S+K +++      ER+Y  W+GGSIL SL TF Q+W+ K EY+E G
Sbjct: 443 -SLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVG 488

>pdb|4I6M|A Chain A, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 477

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 83/179 (46%), Gaps = 4/179 (2%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPS-IVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68
           +V  NG+    AGF+  + P+ + PS  + R    G    +      +   A+ + G   
Sbjct: 8   VVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEGGEAEFIFGTYNXIDAAAEKRNGDEV 67
Query: 69  LKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR---EKMTQIM 125
                  G+  NWD +E  W + +  +L+V+PEE P+++T    N K +    E+  ++ 
Sbjct: 68  YTLVDSQGLPYNWDALEXQWRYLYDTQLKVSPEELPLVITXPATNGKPDXAILERYYELA 127
Query: 126 FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           F+  N P   + I+ +    + G+++  V+D G    +  PI +G  + +A++R    G
Sbjct: 128 FDKLNVPVFQIVIEPLAIALSXGKSSAFVIDIGASGCNVTPIIDGIVVKNAVVRSKFGG 186

>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State Length = 593

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 263 LFQPSMIGMESAGIHETTYNSIMKCDVD-IRKDLYGNIVLSGGSTMFPGIADRMSKEITA 321
           LF+   +G++ A +H     SI  C  D  +K +Y +I++ GG  MF    + +   I  
Sbjct: 472 LFEGKALGLDKAILH-----SIDCCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILN 526
Query: 322 LAPSSMK-----IKVVAPPER---KYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVH 373
             P S +     + V+  P+    +   W GG++LA L T Q++WI + E+   G  ++ 
Sbjct: 527 KMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLACLDTTQELWIYQREWQRFGVRMLR 586
Query: 374 RK 375
            +
Sbjct: 587 ER 588

>pdb|4I6M|B Chain B, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 439

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 30/227 (13%)
Query: 104 PVLLTEAPLNPKANREKMTQIMFETF------NTPAMYVAIQAVLSLYASGRTTGIVLDS 157
           P+LL       +++ E +TQ +FE+         PA   A  + +SL         ++D 
Sbjct: 110 PLLLITHHSWSQSDLEIITQYVFESLEINNLIQLPASLAATYSXISL-----QNCCIIDV 164
Query: 158 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKIL----TERGYSFTTTAEREIVRD 213
           G   +  +PI +   L H +  +   G+ + D+L K+L     ++  S   +   E++ D
Sbjct: 165 GTHHTDIIPIVDYAQLDHLVSSIPXGGQSINDSLKKLLPQWDDDQIESLKKSPIFEVLSD 224
Query: 214 MKEKLAYIALDYEQELE---TAKISSAVEKSYELPDGQVITIGAERFR-CPEVLFQPS-M 268
             +KL+      E E E   T K S     ++    G  I +G +RF+ C  ++   S  
Sbjct: 225 DAKKLSSFDFGNENEDEDEGTLKNSDLEFNTFWDEKGNEIKVGKQRFQGCNNLIKNISNR 284
Query: 269 IGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRM 315
           +G+    I           D++  K ++ NI++ GG+T   G  + +
Sbjct: 285 VGLTLDNID----------DINKAKAVWENIIIVGGTTSISGFKEAL 321

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	377
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	0.0
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	0.0
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	0.0
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	0.0
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	1e-160
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	2e-89
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375

 Score =  761 bits (1967), Expect = 0.0
 Identities = 329/375 (87%), Positives = 351/375 (93%)

Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQS
Sbjct: 1   DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60

Query: 63  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 120

Query: 123 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDL
Sbjct: 121 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL 180

Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSY 242
           AGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL Y+ALD+E E+ TA  SS++EKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 240

Query: 243 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
           ELPDGQVITIG ERFRCPE LFQPS IGMESAGIHETTYNSIMKCD+DIRKDLY N V+S
Sbjct: 241 ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMS 300

Query: 303 GGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
           GG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI K 
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 360

Query: 363 EYDESGPSIVHRKCF 377
           EYDE+GPSIVHRKCF
Sbjct: 361 EYDEAGPSIVHRKCF 375

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394

 Score =  728 bits (1882), Expect = 0.0
 Identities = 176/389 (45%), Positives = 253/389 (65%), Gaps = 15/389 (3%)

Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR--HTGVMVGMGQKDAYVGDEA 60
           D++  + +VCDNGTG VK G+AG + P  +FP++VGRP    T  +  +  KD  VGDEA
Sbjct: 2   DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEA 61

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANRE 119
              R +L + YP+E+GIV NWDDM+ +W +TF  E L +      +LLTE P+NP  NRE
Sbjct: 62  SELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNRE 121

Query: 120 KMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILR 179
           K+ ++MFET+    +YVAIQAVL+LYA G  TG+V+DSGDGV+H  P+YEG++LPH   R
Sbjct: 122 KIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRR 181

Query: 180 LDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVE 239
           LD+AGRD+T  L+K+L  RGY+F  +A+ E VR +KEKL Y+  + EQE + A  ++ + 
Sbjct: 182 LDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLV 241

Query: 240 KSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNI 299
           +SY LPDG++I +G ERF  PE LFQP +I +E  G+ E  +N+I   D+D R + Y +I
Sbjct: 242 ESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHI 301

Query: 300 VLSGGSTMFPGIADRMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSIL 348
           VLSGGSTM+PG+  R+ +E+  L             S  KI++  PP RK+ V++GG++L
Sbjct: 302 VLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVL 361

Query: 349 ASLST-FQQMWIAKAEYDESGPSIVHRKC 376
           A +       W+ + EY E G  ++ +  
Sbjct: 362 ADIMKDKDNFWMTRQEYQEKGVRVLEKLG 390

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418

 Score =  725 bits (1874), Expect = 0.0
 Identities = 147/417 (35%), Positives = 209/417 (50%), Gaps = 43/417 (10%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGR--------PRHTGVMVGMGQK 52
           MA    +   V D GTG  K G+AG+  P+ + PS +               VM G+   
Sbjct: 1   MAG--RLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDL 58

Query: 53  DAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 112
           D ++GDEA  K      K+PI HGIV +WD ME+      +  LR  PE+H  LLTE PL
Sbjct: 59  DFFIGDEAIEKPT-YATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPL 117

Query: 113 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHT 164
           N   NRE   +IMFE+FN P +Y+A+QAVL+L AS  +        TG V+DSGDGV+H 
Sbjct: 118 NTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHV 177

Query: 165 VPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALD 224
           +P+ EGY +   I  + +AGRD+T  + ++L +R          E  + +KE+ +Y+  D
Sbjct: 178 IPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPD 237

Query: 225 YEQELETAKI-SSAVEKSYELPDGQ-----VITIGAERFRCPEVLFQPSMIGME-SAGIH 277
             +E        S   K Y   +        I +G ERF  PE+ F P     + +  I 
Sbjct: 238 LVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPIS 297

Query: 278 ETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIT----------------A 321
           E     I  C +D+R+ LY NIVLSGGSTMF     R+ +++                  
Sbjct: 298 EVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGR 357

Query: 322 LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRK-CF 377
           L P  + ++V+    ++Y+VW GGS+LAS   F Q+   K +Y+E GPSI      F
Sbjct: 358 LKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVF 414

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427

 Score =  679 bits (1754), Expect = 0.0
 Identities = 138/426 (32%), Positives = 205/426 (48%), Gaps = 55/426 (12%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR------------------- 41
           MA      P++ DNGTG  K G+AG+DAP  VFP+++                       
Sbjct: 1   MAS--FNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASK 58

Query: 42  ---HTGVMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVNNWDDMEKIWHHTFYNELR 97
              H          D ++G++A  K     +L YPI HG + NWD ME+ W  + +  LR
Sbjct: 59  GSGHLSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLR 118

Query: 98  VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT------- 150
             PE+H  LLTE PLNP  NRE   +IMFE+FN   +Y+A+QAVL+L AS  +       
Sbjct: 119 CEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRS 178

Query: 151 -TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAERE 209
            TG V+DSGDGV+H +P+ EGY +  +I  + LAGRD+T  +  +L +R    ++    +
Sbjct: 179 LTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSS---LK 235

Query: 210 IVRDMKEKLAYIALDYEQELETAKISSAVEKS----YELPDGQVITIGAERFRCPEVLFQ 265
               +KE+  Y+  D  +E                         I +G ERF  PE+ F 
Sbjct: 236 TAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFN 295

Query: 266 PSMIGMESA-GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAP 324
           P +   +    + E   N +    +D+RK LY NIVLSGGST+F    +R+ +++  +  
Sbjct: 296 PEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVD 355

Query: 325 SSM--------------KIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPS 370
             +               + V++   ++ +VW GGS+LA    F      KA+Y+E G S
Sbjct: 356 ERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGAS 415

Query: 371 IVHRKC 376
           I  R  
Sbjct: 416 IARRYQ 421

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498

 Score =  458 bits (1179), Expect = e-160
 Identities = 81/366 (22%), Positives = 137/366 (37%), Gaps = 37/366 (10%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           +   +++  +V D G+     G++G D P+++ PS+ G+          G K  +     
Sbjct: 17  VYGGDEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTA-----DEGNKKIFSEQSI 71

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANRE 119
              R    LK  IE+G+V +WD  ++ W     NEL +      P LLTE   N   NR+
Sbjct: 72  GIPRKDYELKPIIENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRK 131

Query: 120 KMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILR 179
           K  +++ E     A Y+A  +    +A+GR   +V+D G       PI +G  L  +  R
Sbjct: 132 KSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRR 191

Query: 180 LDLAGRDLTDALMKILTERGY-------------------------SFTTTAEREIVRDM 214
             +AG+ +   + K L  +                            +     R   ++ 
Sbjct: 192 NFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQEC 251

Query: 215 KEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAE-RFRCPEVLFQPSMIGMES 273
           KE L +I      E    ++SS  ++S E P  + I    E R+   E LF P    + +
Sbjct: 252 KETLCHICPTKTLEETKTELSSTAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPA 311

Query: 274 AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKI--KV 331
              +    NS +                SG +     +     KE  A++ S+       
Sbjct: 312 ---NWPRSNSGVVKTWRNDYVPLKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSA 368

Query: 332 VAPPER 337
             P E 
Sbjct: 369 DTPNET 374

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498

 Score =  277 bits (710), Expect = 2e-89
 Identities = 54/223 (24%), Positives = 88/223 (39%), Gaps = 12/223 (5%)

Query: 159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL-MKILTERGYSFTTTAEREIVRDMKEK 217
                       Y     +                  + +   +     +R     + + 
Sbjct: 283 WNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVPLKRTKPSGVNKS 342

Query: 218 LAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIH 277
              +    E+E E              P         E  + P    +P     E  G+ 
Sbjct: 343 DKKVTPTEEKEQEA-------VSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLA 395

Query: 278 ETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP-- 335
           +  Y+SIM  DVD+R  L  N+VL+GG++  PG++DR+  E+  + P S+K +++     
Sbjct: 396 DLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILP-SLKFRILTTGHT 454

Query: 336 -ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
            ER+Y  W+GGSIL SL TF Q+W+ K EY+E G   +    F
Sbjct: 455 IERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRF 497

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 7e-06
 Identities = 32/224 (14%), Positives = 74/224 (33%), Gaps = 58/224 (25%)

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240
           +   +D+ D    IL++        ++  +      +L +  L  ++E+    +   +  
Sbjct: 32  NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG--TLRLFWTLLSKQEEMVQKFVEEVLRI 89

Query: 241 SYE-LPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNS---IMKCDV------- 289
           +Y+ L             +      QPSM+        +  YN      K +V       
Sbjct: 90  NYKFL---------MSPIK--TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138

Query: 290 DIRKDLY-----GNIVLSGGSTMFPGIADRMSKEITALAPS---SMKIKVVAPPERKYSV 341
            +R+ L       N+++ G   +  G      K  T +A     S K++        + +
Sbjct: 139 KLRQALLELRPAKNVLIDG---V-LGSG----K--TWVALDVCLSYKVQCKMD----FKI 184

Query: 342 -WIG-------GSILASLST----FQQMWIAKAEYDESGPSIVH 373
            W+         ++L  L          W +++++  +    +H
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	377
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	100.0
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	100.0
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	100.0
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	100.0
4fo0_A	593	Actin-related protein 8; chromatin remodeling, nuc	100.0
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	100.0
4am6_A	655	Actin-like protein ARP8; nuclear protein, chromati	100.0
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	100.0
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	99.93
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	99.92
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	99.91
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	99.9
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	99.88
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	99.84
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	99.83
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	99.82
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	99.81
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	99.77
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	99.74
2fsj_A	346	Hypothetical protein TA0583; actin homologs, archa	99.72
4a2a_A	419	Cell division protein FTSA, putative; cell cycle,	99.69
2zgy_A	320	Plasmid segregation protein PARM; plasmid partitio	99.55
4apw_A	329	ALP12; actin-like protein; 19.70A {Clostridium tet	99.48
3js6_A	355	Uncharacterized PARM protein; partition, segregati	99.43
2d0o_A	610	DIOL dehydratase-reactivating factor large subunit	99.02
1nbw_A	607	Glycerol dehydratase reactivase alpha subunit; mol	98.99
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	98.63
1hux_A	270	Activator of (R)-2-hydroxyglutaryl-COA dehydratase	97.84
1t6c_A	315	Exopolyphosphatase; alpha/beta protein, actin-like	96.86
2gup_A	292	ROK family protein; sugar kinase, streptococcus pn	96.73
2ews_A	287	Pantothenate kinase; PANK, structural genomics, st	96.44
3mdq_A	315	Exopolyphosphatase; structural genomics, joint cen	96.43
3vgl_A	321	Glucokinase; ROK family, transferase; HET: BGC ANP	96.08
4db3_A	327	Glcnac kinase, N-acetyl-D-glucosamine kinase; stru	96.07
3cer_A	343	Possible exopolyphosphatase-like protein; NESG, BL	95.97
1u6z_A	513	Exopolyphosphatase; alpha/beta protein, askha (ace	95.81
3hi0_A	508	Putative exopolyphosphatase; 17739545, structural	95.73
3r8e_A	321	Hypothetical sugar kinase; ribonuclease H-like mot	95.67
4htl_A	297	Beta-glucoside kinase; structural genomics, sugar	95.43
3vov_A	302	Glucokinase, hexokinase; ROK, sugar kinase, transf	95.28
2qm1_A	326	Glucokinase; alpha-beta structure, putative helix-	95.13
2i7n_A	360	Pantothenate kinase 1; PANK, transferase; HET: ACO	95.09
3cet_A	334	Conserved archaeal protein; Q6M145, MRR63, NESG, X	93.6
2ch5_A	347	NAGK protein; transferase, N-acetylglucosamine, gl	93.18
2ap1_A	327	Putative regulator protein; zinc binding protein,	93.16
3djc_A	266	Type III pantothenate kinase; structural genomics,	93.09
2yhw_A	343	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N	93.03
2h3g_X	268	Biosynthetic protein; pantothenate kinase, anthrax	91.63
3zx3_A	452	Ectonucleoside triphosphate diphosphohydrolase 1;	89.73
3bex_A	249	Type III pantothenate kinase; actin-like fold, ATP	89.21
1zbs_A	291	Hypothetical protein PG1100; alpha-beta protein.,	85.58

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.2e-82  Score=604.38  Aligned_cols=370  Identities=37%  Similarity=0.674  Sum_probs=322.2

Q ss_pred             CCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCC----------------------CccccCCCccceeccchhc
Q 017125            5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHT----------------------GVMVGMGQKDAYVGDEAQS   62 (377)
Q Consensus         5 ~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~----------------------~~~~~~~~~~~~vg~~~~~   62 (377)
                      .+.++||||+||+++|+||+|++.|+++|||+++++++.                      ..+.+..+.+.+||+++..
T Consensus         3 ~~~~~iViDnGs~~~KaG~ag~~~P~~v~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ea~~   82 (427)
T 3dwl_A            3 SFNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALK   82 (427)
T ss_dssp             CCCSCEEECCCSSBC-CEETTSSSCSCCCBCCEECC------------------------------CCSSCCEETHHHHH
T ss_pred             CCCCeEEEECCCCeEEEEECCCCCCCCcCCceEEeecccccccccccccccccccccccccccccCcccCCeEEchHHhh
Confidence            367899999999999999999999999999999998754                      1122445668899999988


Q ss_pred             ccC-cceeeccccCCccCCHHHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhh
Q 017125           63 KRG-ILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV  141 (377)
Q Consensus        63 ~~~-~~~~~~p~~~g~i~d~~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~  141 (377)
                      ... ...+++|+++|.|.|||.+|++|+|+|++.|+++++++|+++++|+++++..|+++++++||.|++++++++.+++
T Consensus        83 ~~~~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~v  162 (427)
T 3dwl_A           83 KASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAV  162 (427)
T ss_dssp             THHHHCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHH
T ss_pred             CcccCcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHH
Confidence            764 6789999999999999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcC--------CceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHH
Q 017125          142 LSLYASG--------RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRD  213 (377)
Q Consensus       142 ~a~~~~g--------~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~  213 (377)
                      +|+|++|        .++|+|||+|+++|+|+||++|+++.++.+++++||++++++|.++|++++..   ..+.+.+++
T Consensus       163 la~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt~~L~~lL~~~~~~---~~~~~~~~~  239 (427)
T 3dwl_A          163 LALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEP---DSSLKTAER  239 (427)
T ss_dssp             HHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHTTC-----------CHHHHH
T ss_pred             HHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHHHHHHHHHHHHHcCCC---chhHHHHHH
Confidence            9999998        68999999999999999999999999999999999999999999999887765   345688999


Q ss_pred             HHHhcceeccCHHHHHHHhccCCCcceEEEc--CCCc--EEecCCccccccccCCCCccCCCC-CCChHHHHHHHHhcCC
Q 017125          214 MKEKLAYIALDYEQELETAKISSAVEKSYEL--PDGQ--VITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCD  288 (377)
Q Consensus       214 ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~l--pd~~--~i~i~~~~~~~~E~lf~p~~~~~~-~~~l~~~I~~~i~~~~  288 (377)
                      +|+++|||+.+++++++.........+.|.+  |||.  .+.++.+||++||+||+|++++.+ ..+|+++|.++|.+||
T Consensus       240 IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~  319 (427)
T 3dwl_A          240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSP  319 (427)
T ss_dssp             HHHHHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSC
T ss_pred             HHHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCC
Confidence            9999999999998888765433333456777  8887  889999999999999999999988 4899999999999999


Q ss_pred             hhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhC--------------CCCceEEEECCCCCccccchhhhhhhccccc
Q 017125          289 VDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALA--------------PSSMKIKVVAPPERKYSVWIGGSILASLSTF  354 (377)
Q Consensus       289 ~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~--------------~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~  354 (377)
                      +|+|+.|++||||+||+|++|||.+||++||+.+.              |...+++|..+++|.+++|+||||+|++++|
T Consensus       320 ~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilasl~~f  399 (427)
T 3dwl_A          320 IDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF  399 (427)
T ss_dssp             HHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeeccccch
Confidence            99999999999999999999999999999999887              4566799999999999999999999999999


Q ss_pred             ccccccHHHHhhcCCcccccccC
Q 017125          355 QQMWIAKAEYDESGPSIVHRKCF  377 (377)
Q Consensus       355 ~~~~itr~ey~e~G~~~~~~k~~  377 (377)
                      +++||||+||+|+|+++|+|+++
T Consensus       400 ~~~witk~EYeE~G~~iv~~~~~  422 (427)
T 3dwl_A          400 GSYCHTKADYEEYGASIARRYQI  422 (427)
T ss_dssp             HHHSEEHHHHHHSCGGGGSCCCC
T ss_pred             hheeEEHHHHhhhChHhheeccc
Confidence            99999999999999999999974

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-79  Score=593.01  Aligned_cols=365  Identities=31%  Similarity=0.577  Sum_probs=331.0

Q ss_pred             CCCCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccc-hhcccCcceeeccccCCccCCH
Q 017125            3 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDE-AQSKRGILTLKYPIEHGIVNNW   81 (377)
Q Consensus         3 ~~~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~-~~~~~~~~~~~~p~~~g~i~d~   81 (377)
                      .+++..+||||+||++||+||+|++.|++++||+++++++..      ++..+||++ +...++...+++|+++|.|.||
T Consensus        19 ggde~~~iVID~GS~~~kaG~ag~~~P~~v~PSvVg~~~~~~------~~~~~vG~e~~~~~r~~l~l~~Pi~~GvI~dw   92 (498)
T 3qb0_A           19 GGDEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADE------GNKKIFSEQSIGIPRKDYELKPIIENGLVIDW   92 (498)
T ss_dssp             CCCCBSCEEEECCSSEEEEEETTCSSCSEEEESEEEEESSCS------SCCEECCTTGGGSCCTTEEEEESEETTEESCH
T ss_pred             CCCCCCeEEEECCCcEEEEEECCCCCeeeecCceeEEeccCC------CccEEEecHHHhcCcCceEEeccCcCCEEccH
Confidence            567889999999999999999999999999999999987542      456789997 5555677889999999999999


Q ss_pred             HHHHHHHHHhcccccccCCCCC-cEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCC
Q 017125           82 DDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDG  160 (377)
Q Consensus        82 ~~~~~~~~~~~~~~L~~~~~~~-~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~  160 (377)
                      +.+|.+|+|+|.+.|++.+.++ ||+|++|++++...|+++++++||.|++++++++.+++||+|++|+++|+|||+|++
T Consensus        93 d~~E~iw~~~f~~~L~v~p~~~~pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~vlalya~G~~tglVVDiG~g  172 (498)
T 3qb0_A           93 DTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHD  172 (498)
T ss_dssp             HHHHHHHHHHHHHTSCCSCCTTCCEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCSSEEEEEECSS
T ss_pred             HHHHHHHHHHHHhhhCCCcccCCceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchHHHHHHHcCCCeEEEEEcCCC
Confidence            9999999999988899999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHc------------------CCCCcCh------h-HHHHHHHHH
Q 017125          161 VSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER------------------GYSFTTT------A-EREIVRDMK  215 (377)
Q Consensus       161 ~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~------------------~~~~~~~------~-~~~~~~~ik  215 (377)
                      .|+|+||++|+++.++..++++||++++++|.++|+++                  ++.+...      . +.+.++++|
T Consensus       173 ~T~vvPI~~G~~l~~ai~rl~vgG~~lt~~L~~lL~~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~~~~~iv~~iK  252 (498)
T 3qb0_A          173 TCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECK  252 (498)
T ss_dssp             CEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHTTTSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHHHHHTHHHHHH
T ss_pred             cEEEEEEeCCEEccccceeccccHHHHHHHHHHHHHhccccchhhhcccccccccccCCCccCccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999864                  3333221      1 345899999


Q ss_pred             HhcceeccC--HHHHHHHhccCCCcceEEEcCCCcEEecCCc-cccccccCCCCccCCC---------------------
Q 017125          216 EKLAYIALD--YEQELETAKISSAVEKSYELPDGQVITIGAE-RFRCPEVLFQPSMIGM---------------------  271 (377)
Q Consensus       216 ~~~~~v~~~--~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~-~~~~~E~lf~p~~~~~---------------------  271 (377)
                      +++|+|+.+  ++++...  ......+.|++|||+.|.++.+ ||++||.||+|++++.                     
T Consensus       253 E~~c~Va~~~~~~~~~~~--~~~~~~~~yeLPDG~~i~lg~E~Rf~~pE~LF~P~~~g~~~~~~~~~~~~~~~~~~~y~~  330 (498)
T 3qb0_A          253 ETLCHICPTKTLEETKTE--LSSTAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVP  330 (498)
T ss_dssp             HHTCCCCSSCHHHHHHHH--HHTCCCEEEECSSSCEEEECHHHHHHHHHTTTSCCGGGSCTTSCCCSSSCCCCCSCCCCC
T ss_pred             HhhEEecCCccHhHHhhh--ccCcCceEEECCCCCEEEECchHhhhCchhhCCHhHcCCccccccccccccccccccccc
Confidence            999999987  4443222  2234578999999999999999 9999999999987643                     


Q ss_pred             -----------------------------------------------------------CCCChHHHHHHHHhcCChhHH
Q 017125          272 -----------------------------------------------------------ESAGIHETTYNSIMKCDVDIR  292 (377)
Q Consensus       272 -----------------------------------------------------------~~~~l~~~I~~~i~~~~~~~~  292 (377)
                                                                                 +..||+++|.++|.+||.|+|
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI~~cd~d~r  410 (498)
T 3qb0_A          331 LKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIMSSDVDLR  410 (498)
T ss_dssp             CCBCC-----------------------------------------------------CCSCCHHHHHHHHHHTSCTTTH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCchHHHHHHHHhCCHHHH
Confidence                                                                       567999999999999999999


Q ss_pred             HHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECC---CCCccccchhhhhhhcccccccccccHHHHhhcCC
Q 017125          293 KDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP---PERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP  369 (377)
Q Consensus       293 ~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~---~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~  369 (377)
                      +.|++||||+||+|++|||.+||++||+.+.| ..+++|..+   ++|.+++|+||||+|++.+|+++||||+||+|+|+
T Consensus       411 ~~L~~nIvLsGGst~~pGf~~Rl~~El~~l~p-~~~i~v~~~~~~~er~~s~WiGgsilasl~~f~~~witk~EY~E~G~  489 (498)
T 3qb0_A          411 ATLAHNVVLTGGTSSIPGLSDRLMTELNKILP-SLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGV  489 (498)
T ss_dssp             HHHHTTEEEESGGGGSTTHHHHHHHHHHHHST-TSCCCEECCSCTGGGGSHHHHHHHHHHTCHHHHHTSEEHHHHHTTCC
T ss_pred             HHHhcCEEEeCCccCchhHHHHHHHHHHHhCC-CCeeEEEcCCCCCccCccEEcccEEEecCcchhceEEEHHHHhhhCc
Confidence            99999999999999999999999999999999 789999987   68999999999999999999999999999999999


Q ss_pred             -ccccccc
Q 017125          370 -SIVHRKC  376 (377)
Q Consensus       370 -~~~~~k~  376 (377)
                       .+|+|||
T Consensus       490 ~~iv~~kc  497 (498)
T 3qb0_A          490 ERLLNDRF  497 (498)
T ss_dssp             HHHHHHTT
T ss_pred             HhhccccC
Confidence             9999998

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...

Probab=100.00  E-value=2.6e-77  Score=568.81  Aligned_cols=374  Identities=88%  Similarity=1.389  Sum_probs=342.9

Q ss_pred             CCCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHH
Q 017125            4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDD   83 (377)
Q Consensus         4 ~~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~   83 (377)
                      .++.++||||+||+++|+||++++.|++++||+++++++...+.+.+.++.+||+++....+...+++|+++|.+.||+.
T Consensus         2 ~~~~~~ivID~Gs~~~k~G~~~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~~~~~~~~~Pi~~G~i~d~d~   81 (375)
T 2fxu_A            2 EDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDD   81 (375)
T ss_dssp             --CCCCEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHHHHTTSEEEECSEETTEECCHHH
T ss_pred             CCCCceEEEECCCCeEEEEECCCCCCceeeccccccccccccccCCCCCCeEechhHhhcCcccceeccccCCcccCHHH
Confidence            46788999999999999999999999999999999998876555555678899999988888889999999999999999


Q ss_pred             HHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCceE
Q 017125           84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH  163 (377)
Q Consensus        84 ~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~  163 (377)
                      ++.+|+|+|++.|+.+++++++++++|+.++..+|+++++++||.+|+++++++++|+||+|++|.++++|||+|+++|+
T Consensus        82 ~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~~~~lVvDiG~gtt~  161 (375)
T 2fxu_A           82 MEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTH  161 (375)
T ss_dssp             HHHHHHHHHHTTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTCSSEEEEEECSSCEE
T ss_pred             HHHHHHHHHHHhcCCCCcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchheeeeecCCCeEEEEEcCCCceE
Confidence            99999999988899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEE
Q 017125          164 TVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYE  243 (377)
Q Consensus       164 v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~  243 (377)
                      |+||++|.++.++..++++||++++++|.++|..+++++....+.+.++++|+++|++..++.++++...........|.
T Consensus       162 v~~v~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~  241 (375)
T 2fxu_A          162 NVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE  241 (375)
T ss_dssp             EEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEE
T ss_pred             EeEeECCEEeccceEEeccCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEE
Confidence            99999999998888899999999999999999988888876667889999999999999998887766554455678999


Q ss_pred             cCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhC
Q 017125          244 LPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALA  323 (377)
Q Consensus       244 lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~  323 (377)
                      +|||+.+.++.+||.++|.||+|.+++.+..+|.++|.++|.+||.++|+.+++|||||||+|++|||.+||++||..+.
T Consensus       242 lpdg~~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~  321 (375)
T 2fxu_A          242 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALA  321 (375)
T ss_dssp             CTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125          324 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF  377 (377)
Q Consensus       324 ~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~  377 (377)
                      |...++++..+++|.+++|+||+++|++..|+++||||+||+|+|+++++||||
T Consensus       322 p~~~~v~v~~~~~p~~~~w~G~si~a~l~~f~~~~itk~ey~e~G~~~~~~k~~  375 (375)
T 2fxu_A          322 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF  375 (375)
T ss_dssp             CTTCCCCEECCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC----
T ss_pred             CCCeeEEEEcCCCCCccEEcchHHhhCcccHhhceeeHHHHhhhChHHHhhhcc
Confidence            988889999999999999999999999999999999999999999999999997

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*

Probab=100.00  E-value=1.9e-76  Score=565.71  Aligned_cols=371  Identities=47%  Similarity=0.883  Sum_probs=164.9

Q ss_pred             CCCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCcc-c-cCCCccceeccchhcccCcceeeccccCCccCCH
Q 017125            4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVM-V-GMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNW   81 (377)
Q Consensus         4 ~~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~-~-~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~   81 (377)
                      +.+.++||||+||+++|+||++++.|++++||+++++++.... . +...++.+||+++...++...+++|+++|.+.||
T Consensus         3 ~~~~~~ivID~Gs~~~k~G~ag~~~P~~~~Ps~v~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~~Pi~~G~i~dw   82 (394)
T 1k8k_B            3 SQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNW   82 (394)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCEEEEECCCCeEEEeeCCCCCcceeccceeEEEcccccccccCCCCCCeEEChHHHhcCCCceeeccccCCEEecH
Confidence            4567899999999999999999999999999999998765432 1 2334678999999888777889999999999999


Q ss_pred             HHHHHHHHHhc-ccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCC
Q 017125           82 DDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDG  160 (377)
Q Consensus        82 ~~~~~~~~~~~-~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~  160 (377)
                      +.++.+|+|+| ++.|+++++++++++++|+.++...|+++++++||.+++++++++++|+||+|++|.++++|||+|++
T Consensus        83 d~~e~i~~~~~~~~~L~~~~~~~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~~~~lVVDiG~g  162 (394)
T 1k8k_B           83 DDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDG  162 (394)
T ss_dssp             -----------------------------------------------------------------------CCEEEECSS
T ss_pred             HHHHHHHHHHhcccccCcCCCCCcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCCceEEEEEcCCC
Confidence            99999999999 88999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcce
Q 017125          161 VSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK  240 (377)
Q Consensus       161 ~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~  240 (377)
                      +|+|+||++|+++.++..++++||++++++|.++|..+++++....+.+.++++|+++|+++.++..+++..........
T Consensus       163 ~T~v~pv~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~  242 (394)
T 1k8k_B          163 VTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVE  242 (394)
T ss_dssp             CEEEECEETTEECSTTCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCE
T ss_pred             ceEeeeeECCEEcccceEEeeccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhheeEecCHHHHHHhhccCCcCce
Confidence            99999999999999888999999999999999999998888876667789999999999999988777765444445567


Q ss_pred             EEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHH
Q 017125          241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIT  320 (377)
Q Consensus       241 ~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~  320 (377)
                      .|.+|||+.+.++.+||.++|+||+|++++.+..+|+++|.++|.+||.++|+.+++|||||||+|++|||.+||++||.
T Consensus       243 ~~~lpdg~~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~el~  322 (394)
T 1k8k_B          243 SYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELK  322 (394)
T ss_dssp             EEECTTSCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHHH
T ss_pred             EEECCCCCEEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhC-----------CCCceEEEECCCCCccccchhhhhhhcccccc-cccccHHHHhhcCCccccc
Q 017125          321 ALA-----------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQ-QMWIAKAEYDESGPSIVHR  374 (377)
Q Consensus       321 ~~~-----------~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~-~~~itr~ey~e~G~~~~~~  374 (377)
                      .+.           |...+++|..+++|.+++|+|||++|++.+|+ ++||||+||+|+|+++++|
T Consensus       323 ~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl~~f~~~~~itk~eY~e~G~~~~~~  388 (394)
T 1k8k_B          323 QLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK  388 (394)
T ss_dssp             HHHHHHTCSSCCCTTCCCCC----------------------------------------------
T ss_pred             HHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhCCcCCccceeecHHHHhhhCHHHHHh
Confidence            987           77778999989999999999999999999999 9999999999999999987

>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.6e-72  Score=566.97  Aligned_cols=370  Identities=21%  Similarity=0.380  Sum_probs=293.9

Q ss_pred             CCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCcc----------------------------------------
Q 017125            7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVM----------------------------------------   46 (377)
Q Consensus         7 ~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~----------------------------------------   46 (377)
                      +++||||+||+++|+|||||+.|. .+|+++++++.....                                        
T Consensus        15 ~~iIVIdpGS~~~riG~A~d~~P~-~iP~~iar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (593)
T 4fo0_A           15 NFIIVIHPGSTTLRIGRATDTLPA-SIPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQNGLKMVDQAIWSKKMSN   93 (593)
T ss_dssp             GGEEEEECCSSEEEEEETTCSSCE-EEECCEEEECSSTTCCCCBCCSSCCTTTTSTTHHHHHHHHHHHHHHHHHHSCCTT
T ss_pred             CCEEEEeCCCCCeEeeecCCCCCC-eeeEEEEEECCCCCCCcccccccccccccccchhhhhhhhHHHHHHHHHHHhhhc
Confidence            458999999999999999999997 569999987532110                                        


Q ss_pred             ---------------------------------ccCCCccceeccchhcc--cCcceeeccccCC-----------ccCC
Q 017125           47 ---------------------------------VGMGQKDAYVGDEAQSK--RGILTLKYPIEHG-----------IVNN   80 (377)
Q Consensus        47 ---------------------------------~~~~~~~~~vg~~~~~~--~~~~~~~~p~~~g-----------~i~d   80 (377)
                                                       .....++++||++|+..  .+.+.++||+++|           .+.+
T Consensus        94 ~~r~~~~s~~~~~~~n~~~~p~~i~~~~~~~~~~~~~~~~~~vG~~al~~~~~~~~~l~~Pi~~G~~n~~~~~~~s~~~~  173 (593)
T 4fo0_A           94 GTRRIPVSPEQARSYNKQMRPAILDHCSGNKWTNTSHHPEYLVGEEALYVNPLDCYNIHWPIRRGQLNIHPGPGGSLTAV  173 (593)
T ss_dssp             SCCCCCCCHHHHHHHHTTCCCEEEESSCSCCCCCCTTCCSEEETHHHHTSCTTSSEEEECSEETTEECCCSSTTCSHHHH
T ss_pred             ccccCCCcHHHhhhhhccCCCcccCCCCccccccccccccccccHHHhhcCCcccceEecCcccCccccccCCccchhcC
Confidence                                             01123567999999754  5678999999999           4679


Q ss_pred             HHHHHHHHHHhcccccccCCCC---CcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeC
Q 017125           81 WDDMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS  157 (377)
Q Consensus        81 ~~~~~~~~~~~~~~~L~~~~~~---~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDi  157 (377)
                      |+++|.+|+|+|.+.|++.+++   ++|||++|+++++..|+++++++||+|+++++++..+++||+|++|++||||||+
T Consensus       174 wdd~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~tglVVDi  253 (593)
T 4fo0_A          174 LADIEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDV  253 (593)
T ss_dssp             HHHHHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCCceEEEEe
Confidence            9999999999998999998765   8999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcC-----hhHHHHHHHHHHhcceeccCHHHHH---
Q 017125          158 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTT-----TAEREIVRDMKEKLAYIALDYEQEL---  229 (377)
Q Consensus       158 G~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~-----~~~~~~~~~ik~~~~~v~~~~~~~~---  229 (377)
                      |++.|+|+||+||+++.++..++++||++++++|.++|+.+++.+..     ..+..+++++|+++|+++.++..+.   
T Consensus       254 G~~~T~v~PV~dG~~l~~~~~rl~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~d~~~v~~iKe~~c~v~~d~~~~~~~~  333 (593)
T 4fo0_A          254 GDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFYWLMQRAGFPYRECQLTNKMDCLLLQHLKETFCHLDQDISGLQDHE  333 (593)
T ss_dssp             CSSCEEEEEEESSCBCGGGCEEESCCHHHHHHHHHHHHHHTTCSCTTCCTTCHHHHHHHHHHHHHHCBCCTTCCSCEEEE
T ss_pred             CCCceeeeeeECCEEehhheEEecccHHHHHHHHHHHHHhcCCCccccccccchhHHHHHHHHHHhcccccchHHhhhhh
Confidence            99999999999999999999999999999999999999998876543     4578899999999999986642110   


Q ss_pred             ----------------------H----H------------------------------------------hccCCCcceE
Q 017125          230 ----------------------E----T------------------------------------------AKISSAVEKS  241 (377)
Q Consensus       230 ----------------------~----~------------------------------------------~~~~~~~~~~  241 (377)
                                            .    .                                          ..........
T Consensus       334 ~~~~~p~~~~~~~~~~~~~E~~~~p~~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (593)
T 4fo0_A          334 FQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLATQSKQEQSAKATADRKS  413 (593)
T ss_dssp             EEECCTTSCEEEEEEEECTHHHHHHHTTTSGGGGCCCSSCCEEECC----------------------------------
T ss_pred             hhcccCCCCceeeEEeccchhhcCchhhcChhhhcccccccchhhhhcccCcccchhhhhhhhcccchhhhhhccccccc
Confidence                                  0    0                                          0000112346


Q ss_pred             EEcCCCcEEecCCccccccccCCCCccC--------------------------------CCCCCChHHHHHHHHhcCC-
Q 017125          242 YELPDGQVITIGAERFRCPEVLFQPSMI--------------------------------GMESAGIHETTYNSIMKCD-  288 (377)
Q Consensus       242 ~~lpd~~~i~i~~~~~~~~E~lf~p~~~--------------------------------~~~~~~l~~~I~~~i~~~~-  288 (377)
                      +..|++..+.++.+++.++|.+|.|+..                                +.+..+|+++|.++|.+|+ 
T Consensus       414 ~~~p~g~~~~~~~e~~~~pe~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~~aI~~SI~~~~~  493 (593)
T 4fo0_A          414 ASKPIGFEGDLRGQSSDLPERLHSQEVDLGSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLDKAILHSIDCCSS  493 (593)
T ss_dssp             ---------------------------------------------------------CHHHHSCCCHHHHHHHHHHTCSS
T ss_pred             ccCCCCcccccccccccCchhccCcccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhCCc
Confidence            7789999999999999999999998642                                1235689999999999998 


Q ss_pred             hhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCc-----eEEEECCC---CCccccchhhhhhhccccccccccc
Q 017125          289 VDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSM-----KIKVVAPP---ERKYSVWIGGSILASLSTFQQMWIA  360 (377)
Q Consensus       289 ~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~-----~v~v~~~~---~~~~~~w~Gasi~a~l~~~~~~~it  360 (377)
                      .|.|+.|++|||||||+|++|||.+||++||..+.|...     +++|+.++   ||.+++|+||||+|++++|+++|||
T Consensus       494 ~D~r~~L~~NIvltGG~s~~pGf~~RL~~eL~~~~p~~~~~~~~~v~v~~~p~~~d~~~~aW~GgSilasL~~f~~~wIt  573 (593)
T 4fo0_A          494 DDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLACLDTTQELWIY  573 (593)
T ss_dssp             HHHHHHHHHEEEEESSTTCCBTHHHHHHHHHHHHSCHHHHHHSSCCEEESSGGGCCTTTHHHHHHHHHHHCGGGGGTCEE
T ss_pred             HHHHHHHhCCEEEEchhhchhcHHHHHHHHHHHhCcchhccccceEEEECCCCCCCCceeeehhhHHHhcCccHHHeeEC
Confidence            699999999999999999999999999999999998643     58999886   8999999999999999999999999


Q ss_pred             HHHHhhcCCcccccccC
Q 017125          361 KAEYDESGPSIVHRKCF  377 (377)
Q Consensus       361 r~ey~e~G~~~~~~k~~  377 (377)
                      |+||+|+|+++|++||+
T Consensus       574 k~EYeE~G~~il~~kc~  590 (593)
T 4fo0_A          574 QREWQRFGVRMLRERAA  590 (593)
T ss_dssp             HHHHHHHTTHHHHHHCS
T ss_pred             HHHHHhhCcHHHhhcCC
Confidence            99999999999999995

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A

Probab=100.00  E-value=4.1e-71  Score=534.03  Aligned_cols=370  Identities=38%  Similarity=0.684  Sum_probs=332.6

Q ss_pred             CCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCc--------cccCCCccceeccchhcccCcceeeccccCC
Q 017125            5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV--------MVGMGQKDAYVGDEAQSKRGILTLKYPIEHG   76 (377)
Q Consensus         5 ~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~--------~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g   76 (377)
                      .+..+||||+||+++|+||++++.|++++||+++++++...        ..+....+++||+++...++ ..+++|+++|
T Consensus         3 ~~~~~ivID~Gs~~~k~G~~~~~~p~~~~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~~~-~~~~~pi~~G   81 (418)
T 1k8k_A            3 GRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPT-YATKWPIRHG   81 (418)
T ss_dssp             CCSCCEEEEECSSEEEEEETTCSSCSEEEESCEEECC-----------CCCTTGGGCEEEGGGGTSCTT-SEEECCEETT
T ss_pred             CCCCeEEEECCCCeEEEeeCCCCCCCCcCCceEEEECcccccccccccccccccccCeEEChHHHhcCC-CEEeccccCC
Confidence            46689999999999999999999999999999998876421        22223346899999987754 7899999999


Q ss_pred             ccCCHHHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhh---------c
Q 017125           77 IVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA---------S  147 (377)
Q Consensus        77 ~i~d~~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~---------~  147 (377)
                      .+.||+.++.+|+++|.+.|+++++++++++++|+.++...|+.+.+++||.+|+++++++++|+||+|+         .
T Consensus        82 ~i~d~d~~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~  161 (418)
T 1k8k_A           82 IVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGER  161 (418)
T ss_dssp             EESCHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSC
T ss_pred             EECCHHHHHHHHHHHHHhccCCCCCCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCC
Confidence            9999999999999999788999888999999999999999999999999999999999999999999998         5


Q ss_pred             CCceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHH
Q 017125          148 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQ  227 (377)
Q Consensus       148 g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~  227 (377)
                      +. +|+|||+|+++|+|+||++|.++.++...+++||++++++|.++|.+++..+....+.+.++++|+++|++..++.+
T Consensus       162 ~~-~glVvDiG~gtt~v~~v~~G~~~~~~~~~~~lGG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~  240 (418)
T 1k8k_A          162 TL-TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVK  240 (418)
T ss_dssp             CC-CEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHHHTTCCCCCGGGHHHHHHHHHHHHCCCCSCHHH
T ss_pred             CC-eEEEEEcCCCceEEEEeECCEEcccceEEEeCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhchhcccHHH
Confidence            66 89999999999999999999999988899999999999999999998888776666788999999999999988877


Q ss_pred             HHHHhccC-CCcceEEEcCCCc-----EEecCCccccccccCCCCccCCCCC-CChHHHHHHHHhcCChhHHHHhhcCce
Q 017125          228 ELETAKIS-SAVEKSYELPDGQ-----VITIGAERFRCPEVLFQPSMIGMES-AGIHETTYNSIMKCDVDIRKDLYGNIV  300 (377)
Q Consensus       228 ~~~~~~~~-~~~~~~~~lpd~~-----~i~i~~~~~~~~E~lf~p~~~~~~~-~~l~~~I~~~i~~~~~~~~~~l~~nIv  300 (377)
                      ++++.... ......|.+||+.     .+.++.+||.++|.||+|++.+.+. .+|.++|.++|.+||.++|+.+++|||
T Consensus       241 e~~~~~~~~~~~~~~~~lpd~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~Iv  320 (418)
T 1k8k_A          241 EFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIV  320 (418)
T ss_dssp             HHHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEE
T ss_pred             HHHhhcccccccceeEECCCCCCCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceE
Confidence            76544321 2234689999998     8999999999999999999888764 799999999999999999999999999


Q ss_pred             eccCCcCCcChHHHHHHHHHhhC----------------CCCceEEEECCCCCccccchhhhhhhcccccccccccHHHH
Q 017125          301 LSGGSTMFPGIADRMSKEITALA----------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEY  364 (377)
Q Consensus       301 l~GG~s~i~g~~~rl~~eL~~~~----------------~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey  364 (377)
                      ||||+|++|||.+||++||..+.                |...++++..+++|.+++|+|||++|++.+|+++||||+||
T Consensus       321 L~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl~~f~~~~itk~ey  400 (418)
T 1k8k_A          321 LSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDY  400 (418)
T ss_dssp             EESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTSHHHHHHSEEHHHH
T ss_pred             EeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHcCccHhheEEEHHHH
Confidence            99999999999999999999875                56677899999999999999999999999999999999999


Q ss_pred             hhcCCccccccc
Q 017125          365 DESGPSIVHRKC  376 (377)
Q Consensus       365 ~e~G~~~~~~k~  376 (377)
                      +|+|+++++|||
T Consensus       401 ~e~G~~~~~~~~  412 (418)
T 1k8k_A          401 EEIGPSICRHNP  412 (418)
T ss_dssp             HHHCGGGGGCCC
T ss_pred             hhhCHHHHhhhc
Confidence            999999999976

>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*

Probab=100.00  E-value=2.7e-59  Score=454.70  Aligned_cols=363  Identities=22%  Similarity=0.421  Sum_probs=303.5

Q ss_pred             CCCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCc--------------------------------------
Q 017125            4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV--------------------------------------   45 (377)
Q Consensus         4 ~~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~--------------------------------------   45 (377)
                      .++.++|||.+||.++|+|+|.|..|. .+|++++++.....                                      
T Consensus        37 ~~~~~~IVIHpGS~~lRIG~AsD~~P~-~ip~~iA~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~k~rmr~~  115 (655)
T 4am6_A           37 NDPTATIVIHPGSNSIKIGFPKDDHPV-VVPNCVAVPKKWLDLENSEHVENVCLQREQSEEFNNIKSEMEKNFRERMRYY  115 (655)
T ss_dssp             CCGGGEEEEECCSSEEEEECTTSSSCE-EEESCEEEEGGGSCCSSSCCCCTTCCCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEcCCCcceeeeecCCCCCc-ccceeEEeccccccCCCccccCccccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence            345789999999999999999999998 77999986531100                                      


Q ss_pred             ----------------------cc----------cCC-Cccceeccchhcc-cCcceeeccccCCccC----C-------
Q 017125           46 ----------------------MV----------GMG-QKDAYVGDEAQSK-RGILTLKYPIEHGIVN----N-------   80 (377)
Q Consensus        46 ----------------------~~----------~~~-~~~~~vg~~~~~~-~~~~~~~~p~~~g~i~----d-------   80 (377)
                                            .+          +.+ ..+.+||++|... ++.+.+++|+++|.|.    |       
T Consensus       116 k~r~~pn~~e~~~~fN~~~~Pe~i~~~nDp~~~~W~~~~~d~~VGdEA~~~~r~~l~l~~PI~~GvI~~~s~Dy~s~q~~  195 (655)
T 4am6_A          116 KRKVPGNAHEQVVSFNENSKPEIISEKNDPSPIEWIFDDSKLYYGSDALRCVDEKFVIRKPFRGGSFNVKSPYYKSLAEL  195 (655)
T ss_dssp             SCCCSTTCCSSTTCCEEEECSCCCCSSSSCCSCCCBCCTTSCEEHHHHHTBCTTTEEEECSEETTEECTTCSSCSSHHHH
T ss_pred             CCCCCCCCHHHHHHhcCCCCCeECCCCCCccccccccCCCCEEEehHHhhCCccCeEEeccccCCEecccCCcccccccc
Confidence                                  00          001 1467899999874 6778999999999998    8       


Q ss_pred             HHHHHHHHHHhccc-ccccCCC---CCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcC-CceEEEE
Q 017125           81 WDDMEKIWHHTFYN-ELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-RTTGIVL  155 (377)
Q Consensus        81 ~~~~~~~~~~~~~~-~L~~~~~---~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-~~~~lVV  155 (377)
                      |+.++.+|+|+|.+ .|++.++   ++|++|++|++++...|+++++++||.|++++++++.++++|+|++| .++|+||
T Consensus       196 WD~mE~Iw~y~f~~~~L~V~p~~~~e~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl~ttGLVV  275 (655)
T 4am6_A          196 ISDVTKLLEHALNSETLNVKPTKFNQYKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGISTSTCVV  275 (655)
T ss_dssp             HHHHHHHHHHHHBSSSCBCCGGGGGGCEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCCSSCEEEE
T ss_pred             HHHHHHHHHHHhccccccccccccCCCcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCCCCceEEE
Confidence            99999999999973 8999886   79999999999999999999999999999999999999999999999 6999999


Q ss_pred             eCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCC-----CCcChhHHHHHHHHHHhccee-ccCHHHHH
Q 017125          156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY-----SFTTTAEREIVRDMKEKLAYI-ALDYEQEL  229 (377)
Q Consensus       156 DiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~-----~~~~~~~~~~~~~ik~~~~~v-~~~~~~~~  229 (377)
                      |+|++.|+|+||++|+++.++..++++||++++++|.++|.++|+     ++....+.+++++||+++||| ..+..   
T Consensus       276 DiG~g~T~VvPV~eG~vl~~ai~rL~iGG~dLT~yL~kLL~~rgypy~~~~f~t~~e~eiVrdIKEk~CyVs~~Di~---  352 (655)
T 4am6_A          276 NIGAAETRIACVDEGTVLEHSAITLDYGGDDITRLFALFLLQSDFPLQDWKIDSKHGWLLAERLKKNFTTFQDADVA---  352 (655)
T ss_dssp             EECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHTTCSCCSCCTTSHHHHHHHHHHHHHHCCCCGGGCC---
T ss_pred             cCCCceEEEEEEeCCEEEhhheeeecchHHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHHheEEEcccchh---
Confidence            999999999999999999999999999999999999999999986     567778899999999999999 44421   


Q ss_pred             HHhccCCCcceEE--EcCCC----cEEecCCccccccccCCCCccCCC--------------------------------
Q 017125          230 ETAKISSAVEKSY--ELPDG----QVITIGAERFRCPEVLFQPSMIGM--------------------------------  271 (377)
Q Consensus       230 ~~~~~~~~~~~~~--~lpd~----~~i~i~~~~~~~~E~lf~p~~~~~--------------------------------  271 (377)
                             .....|  ..|++    ..+.++.|+|.+||+||.|++++.                                
T Consensus       353 -------~q~~~f~~r~P~~~~~ky~i~vgdErflaPe~lF~Pei~~~~~~~~~~~~~~~~~~~~s~d~y~~~~nd~~S~  425 (655)
T 4am6_A          353 -------VQLYNFMNRSPNQPTEKYEFKLFDEVMLAPLALFFPQIFKLIRTSSHKNSSLEFQLPESRDLFTNELNDWNSL  425 (655)
T ss_dssp             -------SEEEEEEECCSSSCEEEEEEEESSHHHHHHHGGGSTHHHHHTSCCCCCCHHHHTTSCCCBCTTTCCBCSCCCH
T ss_pred             -------hhhhcceeccCCCCCcceEEEECCeehhCchhcCChhhcccccccccccchhhhhcCccccccCCCCCCccch
Confidence                   112222  33554    468899999999999999986410                                


Q ss_pred             -----------------------------------------------CCCChHHHHHHHHhc-C---ChhHHHHhhcCce
Q 017125          272 -----------------------------------------------ESAGIHETTYNSIMK-C---DVDIRKDLYGNIV  300 (377)
Q Consensus       272 -----------------------------------------------~~~~l~~~I~~~i~~-~---~~~~~~~l~~nIv  300 (377)
                                                                     ...+|..+|.++|.. |   +....++++.||+
T Consensus       426 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pLdkAIi~SIt~a~~~~d~~k~~~~y~nil  505 (655)
T 4am6_A          426 SQFESKEGNLYCDLNDDLKILNRILDAHNIIDQLQDKPENYGNTLKENFAPLEKAIVQSIANASITADVTRMNSFYSNIL  505 (655)
T ss_dssp             HHHHHHTTCCGGGCCSHHHHHHHHHHHHHHHHHHHTSSCSCSCSSCCCCCCHHHHHHHHHHHHHHTSCGGGHHHHHTCEE
T ss_pred             hHHhhhccccCCCCccHhhhhhhhhcccccccccccCCcccccccccccccHHHHHHHHHHhhhccccHHHHHHHhhcEE
Confidence                                                           014888899999873 2   4444459999999


Q ss_pred             eccCCcCCcChHHHHHHHHHhhCCC-------------------------------------------------------
Q 017125          301 LSGGSTMFPGIADRMSKEITALAPS-------------------------------------------------------  325 (377)
Q Consensus       301 l~GG~s~i~g~~~rl~~eL~~~~~~-------------------------------------------------------  325 (377)
                      +|||+|+||||...|...+...-|.                                                       
T Consensus       506 ivGggski~g~~~~L~dri~i~rp~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  585 (655)
T 4am6_A          506 IVGGSSKIPALDFILTDRINIWRPSLLSSASFPQFYKKLTKEIKDLEGHYVNAPDKTEDENKQILQAQIKEKIVEELEEQ  585 (655)
T ss_dssp             EESTTCCCTTHHHHHHHHHHHHSCSTTTBTTHHHHHHHHHHHHHHHHSTTCSCCSSSCCSSTTSTTHHHHHHHHHHHHHH
T ss_pred             EEcCcccCccHHHHHHHHHHhhCcccccccccHHHHHHHHHhhhhhhhhhccccccccccchhhhhhhhhhhhhhhhhhh
Confidence            9999999999987776665442110                                                       


Q ss_pred             ------------CceEEEECCCCC---ccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125          326 ------------SMKIKVVAPPER---KYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF  377 (377)
Q Consensus       326 ------------~~~v~v~~~~~~---~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~  377 (377)
                                  -.+|+|..+|.+   .+.+|+|||++|+++.|+++||||+||+|+|++++++||+
T Consensus       586 ~~~~~~~~~~~~~~~i~V~~~p~~~d~~~~~W~GgSvla~l~~f~e~wIt~~Eyde~G~~il~~k~~  652 (655)
T 4am6_A          586 HQNIEHQNGNEHIFPVSIIPPPRDMNPALIIWKGASVLAQIKLVEELFITNSDWDVHGSRILQYKCI  652 (655)
T ss_dssp             HHHHHHTTSCCCBCCCCEECCCTTSCGGGHHHHHHHHHTTSHHHHHHCEEHHHHHHHGGGGGGTSCS
T ss_pred             hhhhhhccccCCceeeEEeCCccccCcceeEEecceeeeecccHhheeecHHHHhhhcchheEeccc
Confidence                        124788888854   8999999999999999999999999999999999999985

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=100.00  E-value=5.4e-36  Score=281.50  Aligned_cols=307  Identities=15%  Similarity=0.206  Sum_probs=238.1

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhccc----CcceeeccccCCccCCHHH
Q 017125            8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVNNWDD   83 (377)
Q Consensus         8 ~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~   83 (377)
                      .+|+||+||+++++|+.++. |.+.+||+++...+.       ...+++|++|....    ....+.+|+++|.+.||+.
T Consensus         4 ~~igIDlGT~~s~v~~~~~~-~~~~~PS~v~~~~~~-------~~~~~vG~~A~~~~~~~~~~~~~~~p~~~g~i~~~~~   75 (344)
T 1jce_A            4 KDIGIDLGTANTLVFLRGKG-IVVNEPSVIAIDSTT-------GEILKVGLEAKNMIGKTPATIKAIRPMRDGVIADYTV   75 (344)
T ss_dssp             CEEEEEECSSEEEEEETTTE-EEEEEESCEEEETTT-------CCEEEESHHHHTTTTCCCTTEEEECCEETTEESSHHH
T ss_pred             ceEEEEcCcCcEEEEECCCC-EEEeeCcEEEEecCC-------CcEEEEcHHHHHhcccCCCCeEEEecCCCCeeCChHH
Confidence            68999999999999998765 666789999876541       22357999987653    2345678999999999999


Q ss_pred             HHHHHHHhcccccccC-CCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeC
Q 017125           84 MEKIWHHTFYNELRVA-PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDS  157 (377)
Q Consensus        84 ~~~~~~~~~~~~L~~~-~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDi  157 (377)
                      .+++|.+++.+..... ....++++++|+.++..+|+.+.+. ++.+|++.+.++++|+||+++++.     .+++|||+
T Consensus        76 ~~~i~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~a-~~~aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVvDi  154 (344)
T 1jce_A           76 ALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDA-GLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDI  154 (344)
T ss_dssp             HHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHH-HHHTTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEEEE
T ss_pred             HHHHHHHHHHHHhhccccCCCeEEEEECCCCCHHHHHHHHHH-HHHcCCCeEeccCCHHHHHHhcCCCCCCCceEEEEEe
Confidence            9999999984322222 4468899999999999999998885 599999999999999999999986     68999999


Q ss_pred             CCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHc-CCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCC
Q 017125          158 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER-GYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISS  236 (377)
Q Consensus       158 G~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~-~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~  236 (377)
                      |+++|+++++..|.++  .....++||+++++.|.+++.++ +..+    ..+.++++|++++....+...+        
T Consensus       155 Gggttdvsv~~~~~~~--~~~~~~lGG~~id~~l~~~l~~~~~~~~----~~~~ae~~K~~l~~~~~~~~~~--------  220 (344)
T 1jce_A          155 GGGTTEVAVISLGSIV--TWESIRIAGDEMDEAIVQYVRETYRVAI----GERTAERVKIEIGNVFPSKEND--------  220 (344)
T ss_dssp             CSSCEEEEEEETTEEE--EEEEESCSHHHHHHHHHHHHHHHHCEEC----CHHHHHHHHHHHCBCSCCHHHH--------
T ss_pred             CCCeEEEEEEEcCCEE--eeCCCCccChhHHHHHHHHHHHHhCccc----CHHHHHHHHHHHhccCccccCC--------
Confidence            9999999999999887  45678999999999999998754 3222    2467999999999875443211        


Q ss_pred             CcceEEEc-----CCCc--EEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhh-cCceeccCCcCC
Q 017125          237 AVEKSYEL-----PDGQ--VITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLY-GNIVLSGGSTMF  308 (377)
Q Consensus       237 ~~~~~~~l-----pd~~--~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~-~nIvl~GG~s~i  308 (377)
                        ...+.+     .+|.  .+.++.+++.   .+|+|.+     ..+.+.|.++|.+++.+.+..++ ++|+||||+|++
T Consensus       221 --~~~~~~~~~~~~~g~~~~~~i~~~~~~---~~~~~~~-----~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~  290 (344)
T 1jce_A          221 --ELETTVSGIDLSTGLPRKLTLKGGEVR---EALRSVV-----VAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLL  290 (344)
T ss_dssp             --HCEEEEEEEETTTTEEEEEEEEHHHHH---HHTHHHH-----HHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCS
T ss_pred             --cceEEEeccccCCCCceeEEEeHHHHH---HHHHHHH-----HHHHHHHHHHHHhCCchhccchhhCcEEEECccccc
Confidence              112222     2553  3445444443   2444421     23788889999999988888888 799999999999


Q ss_pred             cChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc-cccc
Q 017125          309 PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL-STFQ  355 (377)
Q Consensus       309 ~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l-~~~~  355 (377)
                      |||.++|++++..      +  +..+++|.+++|.||++++.. +.|+
T Consensus       291 p~l~~~l~~~~~~------~--v~~~~~p~~ava~Gaa~~a~~~~~~~  330 (344)
T 1jce_A          291 RGLDTLLQKETGI------S--VIRSEEPLTAVAKGAGMVLDKVNILK  330 (344)
T ss_dssp             BTHHHHHHHHHSS------C--EEECSSTTTHHHHHHHHGGGCHHHHT
T ss_pred             hHHHHHHHHHHCC------C--ccccCChHHHHHHHHHHHHhChHHHH
Confidence            9999999999942      2  344678899999999999984 5553

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=99.93  E-value=2.5e-26  Score=226.07  Aligned_cols=297  Identities=16%  Similarity=0.212  Sum_probs=201.2

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCCCC--------CCceeeeeCCCCccccCCCccceeccchhccc-----Ccceeec---
Q 017125            8 QPLVCDNGTGMVKAGFAGDDAPRAV--------FPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR-----GILTLKY---   71 (377)
Q Consensus         8 ~~viiD~Gs~~~k~G~~~~~~P~~~--------~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~-----~~~~~~~---   71 (377)
                      .+|.||+||+++++|++.+..|.++        +||+++..          ....++|++|....     ....+++   
T Consensus         3 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~----------~~~~~vG~~A~~~~~~~p~~~~~~Kr~lg   72 (509)
T 2v7y_A            3 KIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFK----------NGERLVGEVAKRQAITNPNTIISIKRHMG   72 (509)
T ss_dssp             CEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEES----------SSSEEESHHHHTTTTTCSSEEECGGGTTT
T ss_pred             CEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEEC----------CCcEEECHHHHHhHHhCCCcHHHHHHhcC
Confidence            5899999999999999987767654        67777662          23467898876542     1122222   


Q ss_pred             -ccc---CCccCCH-HHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhh
Q 017125           72 -PIE---HGIVNNW-DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS  143 (377)
Q Consensus        72 -p~~---~g~i~d~-~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a  143 (377)
                       |+.   +|...+. +....+++++..   ..++  .....+++++|..++..+|+.+.+.+ +.+|++.+.++++|.||
T Consensus        73 ~p~~~~~~g~~~~~~ei~a~~L~~l~~~ae~~l~--~~~~~~VitvPa~~~~~qr~a~~~a~-~~AGl~~~~li~Ep~AA  149 (509)
T 2v7y_A           73 TDYKVEIEGKQYTPQEISAIILQYLKSYAEDYLG--EPVTRAVITVPAYFNDAQRQATKDAG-RIAGLEVERIINEPTAA  149 (509)
T ss_dssp             SCCCEEETTEEECHHHHHHHHHHHHHHHHHHHHT--SCCCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHH
T ss_pred             CCcEEEECCEEEcHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEecCHHHH
Confidence             555   5642222 223333333321   1222  33478999999999999999988865 88999999999999999


Q ss_pred             hhhcCC-----ceEEEEeCCCCceEEEEee--Ccee-cccceEEecccHHHHHHHHHHHHHHc-----CCCCcChh----
Q 017125          144 LYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA----  206 (377)
Q Consensus       144 ~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~----  206 (377)
                      +++++.     .+.+|+|+|+++++++.+.  +|.. +.......++||.++++.|.+++.++     +.++....    
T Consensus       150 Alay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~  229 (509)
T 2v7y_A          150 ALAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHGIDLSKDKMALQ  229 (509)
T ss_dssp             HHHTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCGGGCHHHHH
T ss_pred             HHHHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHH
Confidence            999886     4799999999999999876  4543 22233456999999999999888653     44443211    


Q ss_pred             -HHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcC------CC---cEEecCCccccccccCCCCccCCCCCCCh
Q 017125          207 -EREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELP------DG---QVITIGAERFRCPEVLFQPSMIGMESAGI  276 (377)
Q Consensus       207 -~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp------d~---~~i~i~~~~~~~~E~lf~p~~~~~~~~~l  276 (377)
                       -...++.+|+.++...                ...+.+|      +|   ..+.++.+.|.   .+|+|-+     ..+
T Consensus       230 ~l~~~aE~~K~~ls~~~----------------~~~i~l~~~~~~~~G~~~~~~~itr~~fe---~l~~~~~-----~~i  285 (509)
T 2v7y_A          230 RLKDAAEKAKKELSGVT----------------QTQISLPFISANENGPLHLEMTLTRAKFE---ELSAHLV-----ERT  285 (509)
T ss_dssp             HHHHHHHHHHHHTTTCS----------------EEEEEEEEEEEETTEEEEEEEEEEHHHHH---HHTHHHH-----HTT
T ss_pred             HHHHHHHHHHHhcCCCC----------------cEEEEEeccccCCCCCeeEEEEEEHHHHH---HHHHHHH-----HHH
Confidence             1355777888776431                1222222      23   12234333332   3333311     126


Q ss_pred             HHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          277 HETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       277 ~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      .+.|.++|..+.  +....+++|+|+||+|++|++.++|++.+..        .+..+.+|+.++|.||+++|..
T Consensus       286 ~~~i~~~L~~a~--~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~--------~~~~~~~p~~aVa~Gaa~~a~~  350 (509)
T 2v7y_A          286 MGPVRQALQDAG--LTPADIDKVILVGGSTRIPAVQEAIKRELGK--------EPHKGVNPDEVVAIGAAIQGGV  350 (509)
T ss_dssp             HHHHHHHHHHHT--CCGGGCSEEEEESGGGGCHHHHHHHHHHHSS--------CCBCCSCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC--CChhHCcEEEEECCcccChHHHHHHHHHhCC--------CcCcCCCchhhhHhhHHHHHHH
Confidence            777777777664  2345678999999999999999999998842        2345678999999999999864

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=99.92  E-value=2.5e-24  Score=195.33  Aligned_cols=244  Identities=16%  Similarity=0.149  Sum_probs=180.3

Q ss_pred             CCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHHHHH
Q 017125            7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEK   86 (377)
Q Consensus         7 ~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~~~   86 (377)
                      ...++||+||.++|+.+..++. .     .++                 .+         .....|+++|.+.||+..+.
T Consensus        28 ~~~~gIDiGS~s~k~vi~~~~~-~-----~l~-----------------~~---------~~~~~~l~~g~i~d~~~~~~   75 (272)
T 3h1q_A           28 PYKVGVDLGTADIVLVVTDQEG-I-----PVA-----------------GA---------LKWASVVKDGLVVDYIGAIQ   75 (272)
T ss_dssp             CCEEEEECCSSEEEEEEECTTC-C-----EEE-----------------EE---------EEECCCCBTTBCTTHHHHHH
T ss_pred             CEEEEEEcccceEEEEEECCCC-c-----EEE-----------------EE---------eecccccCCCEEEcHHHHHH
Confidence            4578999999999998853221 1     111                 11         11235889999999999999


Q ss_pred             HHHHhccccccc-CCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCceEEE
Q 017125           87 IWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV  165 (377)
Q Consensus        87 ~~~~~~~~~L~~-~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~  165 (377)
                      +|++++...... ......++++.|..+....++. ++.+++.+|++...+..++.|++++++..+++|||+|+++|+++
T Consensus        76 ~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~-~~~~~~~~g~~~~~i~~e~~A~a~~~~~~~~~viDiGggst~~~  154 (272)
T 3h1q_A           76 IVRELKAKVERLLGSELFQAATAIPPGTVGRNAEA-CGHVVAGAGLELVTLVDEPVAAARALGINDGIVVDIGGGTTGIA  154 (272)
T ss_dssp             HHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTH-HHHHHHHTTCEEEEEECHHHHHHHHHTCSSEEEEEECSSCEEEE
T ss_pred             HHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHH-HHHHHHHcCCeeeecccHHHHHHHHHcCCCEEEEEECCCcEEEE
Confidence            999997543333 2234567788887776666654 55567999999999999999999999999999999999999999


Q ss_pred             EeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcC
Q 017125          166 PIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELP  245 (377)
Q Consensus       166 ~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp  245 (377)
                      ++.+|.++  .....++||.++++.+.+.+.         .+.+.++++|++++.-     ++++..             
T Consensus       155 ~~~~g~~~--~~~~~~~Gg~~~~~~l~~~l~---------~~~~~ae~~k~~~~~~-----~~~~~~-------------  205 (272)
T 3h1q_A          155 VIEKGKIT--ATFDEPTGGTHLSLVLAGSYK---------IPFEEAETIKKDFSRH-----REIMRV-------------  205 (272)
T ss_dssp             EEETTEEE--EECCBSCCHHHHHHHHHHHHT---------CCHHHHHHHHHSSTTH-----HHHHHH-------------
T ss_pred             EEECCEEE--EEecCCCcHHHHHHHHHHHhC---------CCHHHHHHHHHhcCCH-----HHHHHH-------------
Confidence            99999988  456789999999999998873         1345688899887621     111110             


Q ss_pred             CCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCC
Q 017125          246 DGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPS  325 (377)
Q Consensus       246 d~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~  325 (377)
                                    .+.++.         .+.+.+.+.+.+++      ..++|+|+||+|++|||.++|++++..    
T Consensus       206 --------------~~~~~~---------~i~~~i~~~l~~~~------~~~~ivL~GG~a~~~~l~~~l~~~l~~----  252 (272)
T 3h1q_A          206 --------------VRPVIE---------KMALIVKEVIKNYD------QTLPVYVVGGTAYLTGFSEEFSRFLGK----  252 (272)
T ss_dssp             --------------HHHHHH---------HHHHHHHHHTTTSC------SSCCEEEESGGGGSTTHHHHHHHHHSS----
T ss_pred             --------------HHHHHH---------HHHHHHHHHHHhcC------CCCEEEEECCccchhhHHHHHHHHhCC----
Confidence                          011111         16667777777775      235999999999999999999999832    


Q ss_pred             CceEEEECCCCCccccchhhhhhh
Q 017125          326 SMKIKVVAPPERKYSVWIGGSILA  349 (377)
Q Consensus       326 ~~~v~v~~~~~~~~~~w~Gasi~a  349 (377)
                          ++..+++|+++.|.||+++|
T Consensus       253 ----~v~~~~~p~~a~a~Gaal~a  272 (272)
T 3h1q_A          253 ----EVQVPIHPLLVTPLGIALFG  272 (272)
T ss_dssp             ----CCBCCSSGGGHHHHHHHTTC
T ss_pred             ----CccccCChHHHHHHHHHhcC
Confidence                34456789999999999875

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=99.91  E-value=1.9e-24  Score=205.71  Aligned_cols=304  Identities=15%  Similarity=0.162  Sum_probs=195.8

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCCCC--------CCceeeeeCCCCccccCCCccceeccchhccc------Cccee----
Q 017125            8 QPLVCDNGTGMVKAGFAGDDAPRAV--------FPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR------GILTL----   69 (377)
Q Consensus         8 ~~viiD~Gs~~~k~G~~~~~~P~~~--------~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~------~~~~~----   69 (377)
                      ..|.||+||+++.+++..+..|.++        +||+++...+         ...++|.+|....      ....+    
T Consensus         3 ~~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~---------~~~~~G~~A~~~~~~~~~~~~~~~k~~l   73 (383)
T 1dkg_D            3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQD---------GETLVGQPAKRQAVTNPQNTLFAIKRLI   73 (383)
T ss_dssp             CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTT---------SCEEESHHHHTTSTTCGGGEEECGGGTT
T ss_pred             cEEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECC---------CCEEECHHHHHhhhhCccceeehhHHhh
Confidence            4789999999999998865444433        5676665332         2234555543220      00000    


Q ss_pred             --------------ecccc-------------CCccCC-HHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhH
Q 017125           70 --------------KYPIE-------------HGIVNN-WDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR  118 (377)
Q Consensus        70 --------------~~p~~-------------~g~i~d-~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~  118 (377)
                                    .+|+.             .|.... .+....+++++..   ..++  .....+++++|..++..+|
T Consensus        74 g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~i~~~~L~~l~~~a~~~~~--~~~~~~vitvP~~~~~~~r  151 (383)
T 1dkg_D           74 GRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLG--EPVTEAVITVPAYFNDAQR  151 (383)
T ss_dssp             TCBSCSHHHHHHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHS--SCCCEEEECBCTTCCHHHH
T ss_pred             CCCCCcHHHHHHhhcCCeEEEEcCCCcEEEEECCEEEcHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHH
Confidence                          02222             232222 3344555555531   2232  2346799999999999999


Q ss_pred             HHHHhhhcccCCCCeEEEechhhhhhhhcCCc------eEEEEeCCCCceEEEEeeCc------eec-ccceEEecccHH
Q 017125          119 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRT------TGIVLDSGDGVSHTVPIYEG------YAL-PHAILRLDLAGR  185 (377)
Q Consensus       119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~------~~lVVDiG~~~t~v~~v~~g------~~~-~~~~~~~~~GG~  185 (377)
                      +.+.+.+ +.+|++.+.++++|.||+++++..      +.+|+|+|+++|+++.+..+      ... .......++||+
T Consensus       152 ~~~~~a~-~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~  230 (383)
T 1dkg_D          152 QATKDAG-RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGE  230 (383)
T ss_dssp             HHHHHHH-HHTTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHH
T ss_pred             HHHHHHH-HHcCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHH
Confidence            9988875 889999999999999999988653      78999999999999988754      221 112345699999


Q ss_pred             HHHHHHHHHHHHc-----CCCCcChh-----HHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCC-c--EEec
Q 017125          186 DLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDG-Q--VITI  252 (377)
Q Consensus       186 ~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~-~--~i~i  252 (377)
                      ++++.|.+++.++     +.++....     -.+.++++|++++.....          .-..+..+..++| .  .+.+
T Consensus       231 ~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~----------~i~i~~~~~~~~G~~~~~~~i  300 (383)
T 1dkg_D          231 DFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT----------DVNLPYITADATGPKHMNIKV  300 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEE----------EEEEEEEEEETTEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCce----------EEEEecccccCCCCeeEEEEE
Confidence            9999999888654     44443211     135678888887753200          0000111223334 2  2344


Q ss_pred             CCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEE
Q 017125          253 GAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVV  332 (377)
Q Consensus       253 ~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~  332 (377)
                      +.+.+.   .+|+|.+     ..+.+.|.++|.+++.  .+..+++|+|+||+|++|++.++|++++..        ++.
T Consensus       301 t~~~~~---~~~~~~~-----~~i~~~i~~~l~~~~~--~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~--------~v~  362 (383)
T 1dkg_D          301 TRAKLE---SLVEDLV-----NRSIELLKVALQDAGL--SVSDIDDVILVGGQTRMPMVQKKVAEFFGK--------EPR  362 (383)
T ss_dssp             EHHHHH---HHSHHHH-----HHHHHHHHHHHHTTTC--CTTTCCEEEEESGGGGSHHHHHHHHHHHSS--------CCB
T ss_pred             eHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCC--CHhhCCEEEEecCccccHHHHHHHHHHhCC--------CCC
Confidence            443332   3344411     1266777777777652  345568999999999999999999999842        244


Q ss_pred             CCCCCccccchhhhhhhcc
Q 017125          333 APPERKYSVWIGGSILASL  351 (377)
Q Consensus       333 ~~~~~~~~~w~Gasi~a~l  351 (377)
                      .+.+|++++|.||+++|..
T Consensus       363 ~~~~p~~ava~Gaa~~a~~  381 (383)
T 1dkg_D          363 KDVNPDEAVAIGAAVQGGV  381 (383)
T ss_dssp             CSSCTTTHHHHHHHHHTTT
T ss_pred             CCcChHHHHHHHHHHHHHh
Confidence            5678999999999999875

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=99.88  E-value=8.4e-23  Score=195.74  Aligned_cols=300  Identities=17%  Similarity=0.187  Sum_probs=185.1

Q ss_pred             CCCCEEEeCCCCceEEeeeCCCCCCC--------CCCceeeeeCCCCccccCCCccceeccchhccc--CcceeeccccC
Q 017125            6 DIQPLVCDNGTGMVKAGFAGDDAPRA--------VFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR--GILTLKYPIEH   75 (377)
Q Consensus         6 ~~~~viiD~Gs~~~k~G~~~~~~P~~--------~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~--~~~~~~~p~~~   75 (377)
                      .+.+|.||+||+++++++..+..|.+        .+||+++..          .+..++|.+|....  ......+.+++
T Consensus        22 ~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~----------~~~~~vG~~A~~~~~~~~~~~~~~~Kr   91 (404)
T 3i33_A           22 SMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT----------DTERLIGDAAKNQVAMNPTNTIFDAKR   91 (404)
T ss_dssp             -CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEEC----------SSCEEETHHHHHTTTTCSTTEECCGGG
T ss_pred             cCCEEEEEcCCccEEEEEEECCeeEEEECCCCCcccceEEEEC----------CCCEEecHHHHHhhHhChhhhHHHHHH
Confidence            35689999999999999987665542        234444432          23566787775431  11112222222


Q ss_pred             Ccc---------------------------------------CCHHHHHHHHHHhc---ccccccCCCCCcEEEeeCCCC
Q 017125           76 GIV---------------------------------------NNWDDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLN  113 (377)
Q Consensus        76 g~i---------------------------------------~d~~~~~~~~~~~~---~~~L~~~~~~~~vvl~~~~~~  113 (377)
                      ..-                                       .-.+....+++++.   ...++  .....+++++|..+
T Consensus        92 ~lg~~~~~~~~~~~~~~~p~~~~~~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~--~~~~~~vitvPa~~  169 (404)
T 3i33_A           92 LIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLG--GKVHSAVITVPAYF  169 (404)
T ss_dssp             TTTCCTTSHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHS--SCCCEEEEEECTTC
T ss_pred             HhCCCCCcHHHHHHHhhCCceEEccCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhc--cCCCcEEEEECCCC
Confidence            111                                       11123344444442   12222  23467999999999


Q ss_pred             CHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCc---------eEEEEeCCCCceEEEEee--Ccee-cccceEEec
Q 017125          114 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT---------TGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLD  181 (377)
Q Consensus       114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~---------~~lVVDiG~~~t~v~~v~--~g~~-~~~~~~~~~  181 (377)
                      +..+|+.+.+.+ +.+|++.+.++++|.||+++++..         +.+|+|+|+++|+++.+.  +|.. +.......+
T Consensus       170 ~~~~r~~~~~a~-~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~  248 (404)
T 3i33_A          170 NDSQRQATKDAG-TITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTH  248 (404)
T ss_dssp             CHHHHHHHHHHH-HHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETT
T ss_pred             CHHHHHHHHHHH-HHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCCeEEEEEEeCCCC
Confidence            999999887774 889999999999999999988643         469999999999999874  4332 222334579


Q ss_pred             ccHHHHHHHHHHHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEc---CCCc
Q 017125          182 LAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYEL---PDGQ  248 (377)
Q Consensus       182 ~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~l---pd~~  248 (377)
                      +||.++++.+.+++.++     +.++.....     ...++..|+.++..                ....+.+   .++.
T Consensus       249 lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~----------------~~~~~~~~~~~~g~  312 (404)
T 3i33_A          249 LGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSS----------------TQASIEIDSLYEGV  312 (404)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTS----------------SEEEEEEEEEETTE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcC----------------cceEEEEeeccCCc
Confidence            99999999999888432     333221110     13455555554321                1122222   1333


Q ss_pred             EE--ecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCC
Q 017125          249 VI--TIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSS  326 (377)
Q Consensus       249 ~i--~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~  326 (377)
                      .+  .++.+.+   |-++.|.     ...+.+.|.+.|.....  ....+++|+||||+|++|++.++|++.+...    
T Consensus       313 ~~~~~i~r~~~---~~~~~~~-----~~~i~~~i~~~l~~~~~--~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~----  378 (404)
T 3i33_A          313 DFYTSITRARF---EELNADL-----FRGTLEPVEKALRDAKL--DKGQIQEIVLVGGSTRIPKIQKLLQDFFNGK----  378 (404)
T ss_dssp             EEEEEEEHHHH---HHHTHHH-----HHHTHHHHHHHHHHHTC--CGGGCCEEEEESGGGGCHHHHHHHHHHTTTC----
T ss_pred             eeEEEEcHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCC--CHhhCCEEEEECCccccHHHHHHHHHHcCCC----
Confidence            22  2222222   2233331     11245566666665432  2345688999999999999999999887321    


Q ss_pred             ceEEEECCCCCccccchhhhhhhcc
Q 017125          327 MKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       327 ~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                         ++..+.+|+.+++.||+++|.+
T Consensus       379 ---~v~~~~~p~~ava~Gaa~~a~~  400 (404)
T 3i33_A          379 ---ELNKSINPDEAVAYGAAVQAAI  400 (404)
T ss_dssp             ---CCBCSSCTTTHHHHHHHHHHHH
T ss_pred             ---CCCCCcCHHHHHHHHHHHHHHH
Confidence               3445678999999999999875

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=99.84  E-value=8.8e-21  Score=189.89  Aligned_cols=298  Identities=17%  Similarity=0.202  Sum_probs=189.6

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCCC--------CCCceeeeeCCCCccccCCCccceeccchhccc------Ccceee---
Q 017125            8 QPLVCDNGTGMVKAGFAGDDAPRA--------VFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR------GILTLK---   70 (377)
Q Consensus         8 ~~viiD~Gs~~~k~G~~~~~~P~~--------~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~------~~~~~~---   70 (377)
                      ..|.||+||+++.+++..+..|.+        .+||+++...+         ...++|.+|....      ....++   
T Consensus         3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~---------~~~~vG~~A~~~~~~~p~~t~~~~Kr~i   73 (605)
T 2kho_A            3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQD---------GETLVGQPAKRQAVTNPQNTLFAIKRLI   73 (605)
T ss_dssp             -CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECTT---------SCEEESHHHHTTTTTCGGGEEECGGGTT
T ss_pred             CEEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEECC---------CcEEECHHHHHHhhhCCCCEeehhhHhh
Confidence            489999999999999886554442        25666655322         2344665553320      000011   


Q ss_pred             ---------------cccc-------------CCccCC-HHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhH
Q 017125           71 ---------------YPIE-------------HGIVNN-WDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR  118 (377)
Q Consensus        71 ---------------~p~~-------------~g~i~d-~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~  118 (377)
                                     +|+.             .|.... .+....+++++..   ..++  ..-..+++++|..++..+|
T Consensus        74 G~~~~d~~v~~~~~~~p~~~~~~~~g~~~i~~~g~~~~~~ei~a~~L~~l~~~ae~~l~--~~v~~~VitVPa~f~d~qr  151 (605)
T 2kho_A           74 GRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLG--EPVTEAVITVPAYFNDAQR  151 (605)
T ss_dssp             TCBSSSTTHHHHHHHCSSCEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHC--SCCCEEEEEECTTCCHHHH
T ss_pred             CCCCCcHHHHHHhhcCCeEEEECCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhC--CCCcEEEEEECCCCCHHHH
Confidence                           1222             232222 2333445554431   2333  2345799999999999999


Q ss_pred             HHHHhhhcccCCCCeEEEechhhhhhhhcCCc------eEEEEeCCCCceEEEEeeC------cee-cccceEEecccHH
Q 017125          119 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRT------TGIVLDSGDGVSHTVPIYE------GYA-LPHAILRLDLAGR  185 (377)
Q Consensus       119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~------~~lVVDiG~~~t~v~~v~~------g~~-~~~~~~~~~~GG~  185 (377)
                      +.+.+.+ +.+|++.+.++++|.||++++|..      +.+|+|+|+++++|+.+..      |.. +.......++||.
T Consensus       152 ~a~~~A~-~~AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~  230 (605)
T 2kho_A          152 QATKDAG-RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGE  230 (605)
T ss_dssp             HHHHHHH-HTTTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGG
T ss_pred             HHHHHHH-HHcCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHH
Confidence            9888776 889999999999999999988643      5899999999999998873      432 2222345689999


Q ss_pred             HHHHHHHHHHHHc-----CCCCcChh-----HHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcC------CC-c
Q 017125          186 DLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELP------DG-Q  248 (377)
Q Consensus       186 ~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp------d~-~  248 (377)
                      ++++.|.+++.++     +.++....     -...++.+|+.++...                ...+.+|      +| .
T Consensus       231 d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~----------------~~~i~l~~~~~~~~G~~  294 (605)
T 2kho_A          231 DFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQ----------------QTDVNLPYITADATGPK  294 (605)
T ss_dssp             GTHHHHHHHHHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSS----------------EEEEEEEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCC----------------ceEEEecccccCCCCce
Confidence            9999999888643     44443211     1245677777766321                1122222      22 1


Q ss_pred             E--EecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCC
Q 017125          249 V--ITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSS  326 (377)
Q Consensus       249 ~--i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~  326 (377)
                      .  +.++.+.|   |-++.|-     ...+.+.|.++|.....  ....++.|+||||+|++|++.+++++.+..     
T Consensus       295 ~~~~~itr~~f---e~l~~~~-----~~~i~~~i~~~L~~a~~--~~~~i~~VvLvGG~srip~v~~~l~~~fg~-----  359 (605)
T 2kho_A          295 HMNIKVTRAKL---ESLVEDL-----VNRSIEPLKVALQDAGL--SVSDIDDVILVGGQTRMPMVQKKVAEFFGK-----  359 (605)
T ss_dssp             EEEEEEEHHHH---HTTCCST-----TGGGTSHHHHHHHTTTC--CTTTCSEEEEESGGGGSHHHHHHHHHHHSS-----
T ss_pred             EEEEEEeHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCC--ChhhCceEEEECCcccChHHHHHHHHhcCC-----
Confidence            1  23333332   2233331     12267778888877642  234568999999999999999999988832     


Q ss_pred             ceEEEECCCCCccccchhhhhhhcc
Q 017125          327 MKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       327 ~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                         .+....+|+.+++.||+++|..
T Consensus       360 ---~~~~~~npd~aVA~GAa~~a~~  381 (605)
T 2kho_A          360 ---EPRKDVNPDEAVAIGAAVQGGV  381 (605)
T ss_dssp             ---CCBCSSCTTTHHHHHHHHHHTT
T ss_pred             ---CcCcCCCcchHHHHHHHHHHHH
Confidence               2345678899999999999874

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=99.83  E-value=4e-20  Score=183.38  Aligned_cols=216  Identities=17%  Similarity=0.208  Sum_probs=147.1

Q ss_pred             CCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-------ceEEEEeCCCCceEEEEee--Ccee
Q 017125          102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIY--EGYA  172 (377)
Q Consensus       102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~v~~v~--~g~~  172 (377)
                      -..+++++|..++..+|+.+.+.+ +.+|++.+.++++|.||+++++.       .+.+|+|+|+++++++.+.  +|..
T Consensus       139 v~~~VitVPa~f~~~qr~a~~~A~-~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~  217 (554)
T 1yuw_A          139 VTNAVVTVPAYFNDSQRQATKDAG-TIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIF  217 (554)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHH-HTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEE
T ss_pred             CCeEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcE
Confidence            357999999999999999888755 88999999999999999998863       4689999999999999887  6754


Q ss_pred             -cccceEEecccHHHHHHHHHHHHHH-----cCCCCcChh-----HHHHHHHHHHhcceeccCHHHHHHHhccCCCcceE
Q 017125          173 -LPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTTA-----EREIVRDMKEKLAYIALDYEQELETAKISSAVEKS  241 (377)
Q Consensus       173 -~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~  241 (377)
                       +.......++||.++++.|.+++..     .+.++....     -...++.+|+.++...                ...
T Consensus       218 ~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~----------------~~~  281 (554)
T 1yuw_A          218 EVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSST----------------QAS  281 (554)
T ss_dssp             EEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSS----------------EEE
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCc----------------eEE
Confidence             2334456799999999999988753     233432211     1244666777655321                122


Q ss_pred             EEcC---CCcE--EecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHH
Q 017125          242 YELP---DGQV--ITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMS  316 (377)
Q Consensus       242 ~~lp---d~~~--i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~  316 (377)
                      +.++   +|..  +.++.+.|   |-++.|-     ...+.+.|.+++....  +.+..++.|+|+||+|++|++.++|+
T Consensus       282 i~i~~~~~g~~~~~~ltr~~~---e~l~~~~-----~~~i~~~i~~~L~~a~--~~~~~i~~VvLvGG~srip~v~~~l~  351 (554)
T 1yuw_A          282 IEIDSLYEGIDFYTSITRARF---EELNADL-----FRGTLDPVEKALRDAK--LDKSQIHDIVLVGGSTRIPKIQKLLQ  351 (554)
T ss_dssp             EEETTCSSSCCEEEEEEHHHH---HHHTHHH-----HHHTTHHHHHHHHHTT--CCGGGCCEEEEESGGGGCHHHHHHHH
T ss_pred             EEEeeccCCceEEEEEEHHHH---HHHHHHH-----HHHHHHHHHHHHHHcC--CChhhCcEEEEECCcccChHHHHHHH
Confidence            3332   2322  22222222   1222220     0114455666665542  22345689999999999999999998


Q ss_pred             HHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          317 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       317 ~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      +.+...       ++..+.+|+.+++.||+++|..
T Consensus       352 ~~f~~~-------~v~~~~np~~aVA~Gaa~~a~~  379 (554)
T 1yuw_A          352 DFFNGK-------ELNKSINPDEAVAYGAAVQAAI  379 (554)
T ss_dssp             HHTTTC-------CCBCCSCTTTHHHHHHHHHHHH
T ss_pred             HHcCCC-------ccccCCCchhHHHHHHHHHHHH
Confidence            877432       3345678899999999999863

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=99.82  E-value=3.5e-20  Score=187.07  Aligned_cols=213  Identities=10%  Similarity=0.176  Sum_probs=146.2

Q ss_pred             CcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC------------ceEEEEeCCCCceEEEEee--
Q 017125          103 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------------TTGIVLDSGDGVSHTVPIY--  168 (377)
Q Consensus       103 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------------~~~lVVDiG~~~t~v~~v~--  168 (377)
                      ..++|++|..++..+|+.+.+.+ +.+|++.+.++++|.||++++|.            .+.+|+|+|+++++|+.+.  
T Consensus       139 ~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~  217 (675)
T 3d2f_A          139 TDVCIAVPPWYTEEQRYNIADAA-RIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFK  217 (675)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEE
T ss_pred             ceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEec
Confidence            57999999999999999888766 88999999999999999987742            4689999999999999886  


Q ss_pred             Ccee-cccceEEecccHHHHHHHHHHHHHH-----cCCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCC
Q 017125          169 EGYA-LPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSA  237 (377)
Q Consensus       169 ~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~  237 (377)
                      +|.. +.......++||.++++.|.+++..     .+.++.....     ...++.+|+.++..                
T Consensus       218 ~g~~~V~a~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~----------------  281 (675)
T 3d2f_A          218 KGQLKVLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSAN----------------  281 (675)
T ss_dssp             TTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred             CCeEEEEEEcCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcC----------------
Confidence            6654 3333345799999999999998853     2333321111     24466667665421                


Q ss_pred             cceEEEcC---CCc--EEecCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcCh
Q 017125          238 VEKSYELP---DGQ--VITIGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI  311 (377)
Q Consensus       238 ~~~~~~lp---d~~--~i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~  311 (377)
                      ....+.++   ++.  .+.++.+.|. ..+.++..         +.+.|.+++.....  ...-++.|+||||+|++|++
T Consensus       282 ~~~~i~i~~~~~g~~~~~~itr~~fe~l~~~l~~~---------i~~~i~~~L~~a~l--~~~~I~~VvLvGGssriP~v  350 (675)
T 3d2f_A          282 TNAPFSVESVMNDVDVSSQLSREELEELVKPLLER---------VTEPVTKALAQAKL--SAEEVDFVEIIGGTTRIPTL  350 (675)
T ss_dssp             SEEEEEETTSSSSCCEEEEEEHHHHHHHTHHHHTT---------TTHHHHHHHHHHTC--CGGGCCEEEEESGGGGSHHH
T ss_pred             CceEEEEeeeccCceEEEEEeHHHHHHHHHHHHHH---------HHHHHHHHHHHhCC--ChhhCcEEEEECCCccChHH
Confidence            01222232   122  2233332221 22223322         56666677665421  12346899999999999999


Q ss_pred             HHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          312 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       312 ~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      .++|++.+..        .+....+|+.++..||+++|..
T Consensus       351 ~~~l~~~fg~--------~~~~~~nPdeaVA~GAa~~a~~  382 (675)
T 3d2f_A          351 KQSISEAFGK--------PLSTTLNQDEAIAKGAAFICAI  382 (675)
T ss_dssp             HHHHHHHHTS--------CEECCSCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHhcCC--------CccccCCcchHHHHHHHHHHHH
Confidence            9999988831        2445678999999999999863

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=99.81  E-value=2.5e-20  Score=178.77  Aligned_cols=238  Identities=13%  Similarity=0.152  Sum_probs=149.1

Q ss_pred             HHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCc--------
Q 017125           82 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------  150 (377)
Q Consensus        82 ~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~--------  150 (377)
                      +....+++++..   ..++  .....+++++|..++..+|+.+.+.+ +..|++.+.++++|.||+++++..        
T Consensus       129 ev~~~~L~~l~~~a~~~~~--~~~~~~vitvPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~  205 (409)
T 4gni_A          129 EIATRYLRRLVGAASEYLG--KKVTSAVITIPTNFTEKQKAALIAAA-AAADLEVLQLISEPAAAVLAYDARPEATISDK  205 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHT--SCCCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHTTC------CCE
T ss_pred             HHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEEcCHHHHHHHHhcccccCCCCC
Confidence            344555555531   2333  33467999999999999999877776 889999999999999999998754        


Q ss_pred             eEEEEeCCCCceEEEEee--Ccee-cccceEEecccHHHHHHHHHHHHHHc-----C--CCCcChhH-----HHHHHHHH
Q 017125          151 TGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKILTER-----G--YSFTTTAE-----REIVRDMK  215 (377)
Q Consensus       151 ~~lVVDiG~~~t~v~~v~--~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~-----~--~~~~~~~~-----~~~~~~ik  215 (377)
                      +.+|+|+|+++|+++.+.  +|.. +.......++||.++++.|.+++..+     +  .+......     ...++.+|
T Consensus       206 ~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K  285 (409)
T 4gni_A          206 IIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTK  285 (409)
T ss_dssp             EEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHH
Confidence            589999999999999863  3321 12222357999999999999888642     1  11111000     12355555


Q ss_pred             HhcceeccCHHHHHHHhccCCCcceEEEc---CCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHH
Q 017125          216 EKLAYIALDYEQELETAKISSAVEKSYEL---PDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIR  292 (377)
Q Consensus       216 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~l---pd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~  292 (377)
                      +.++..                ....+.+   .++....+.-.|..+ |-++.|-     ...+.+.|.+.+....  ..
T Consensus       286 ~~ls~~----------------~~~~i~i~~~~~~~~~~~~itr~~~-~~~~~~~-----~~~i~~~i~~~l~~~~--~~  341 (409)
T 4gni_A          286 RALSRS----------------TNASFSVESLIDGLDFASTINRLRY-ETIARTV-----FEGFNRLVESAVKKAG--LD  341 (409)
T ss_dssp             HHHHHS----------------SEEEEEEEEEETTEEEEEEEEHHHH-HHHTHHH-----HHHHHHHHHHHHHHTT--CC
T ss_pred             HhCCCC----------------CceEEEeecccCCcceEEEeeHHHH-HHHHHHH-----HHHHHHHHHHHHHHcC--CC
Confidence            544311                1112222   123222211112111 2233331     0114455555555442  22


Q ss_pred             HHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEE------ECCCCCccccchhhhhhhccc
Q 017125          293 KDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKV------VAPPERKYSVWIGGSILASLS  352 (377)
Q Consensus       293 ~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v------~~~~~~~~~~w~Gasi~a~l~  352 (377)
                      ...++.|+||||+|++|++.++|++.+..      .+++      ....+|+.++-.||+++|...
T Consensus       342 ~~~i~~V~LvGG~s~~p~v~~~l~~~f~~------~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~  401 (409)
T 4gni_A          342 PLDVDEVIMSGGTSNTPRIAANFRYIFPE------STRILAPSTDPSALNPSELQARGAALQASLI  401 (409)
T ss_dssp             GGGCCEEEEESGGGGCHHHHHHHHHHSCT------TSEEESTTTCTTCCCTTTHHHHHHHHHHHHH
T ss_pred             HHHCCEEEEECCccccHHHHHHHHHHcCC------ccccccccccCCCcCHHHHHHHHHHHHhhhh
Confidence            34568999999999999999988877732      2355      344688999999999998874

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=99.77  E-value=5.6e-19  Score=176.85  Aligned_cols=302  Identities=17%  Similarity=0.180  Sum_probs=179.0

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCC--------CCCCceeeeeCCCCccccCCCccceeccchhccc------Ccceeeccc
Q 017125            8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR------GILTLKYPI   73 (377)
Q Consensus         8 ~~viiD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~------~~~~~~~p~   73 (377)
                      .+|.||+||+++.+++..+..|.        ..+||+++...+         ...++|..|....      ....+++-+
T Consensus         3 ~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~~---------~~~~vG~~A~~~~~~~p~~ti~~~Krll   73 (605)
T 4b9q_A            3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQD---------GCTLVGQPAKRQAVTNPQNTLFAIKRLI   73 (605)
T ss_dssp             CEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECTT---------SCEEESHHHHHTTTTCGGGEECCGGGTT
T ss_pred             cEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeCC---------CcEEecHHHHHHHHhCCCcEehhhHHhh
Confidence            57999999999999987544333        344666655322         2355666554321      111111111


Q ss_pred             c-------------------------------CCcc-CCHHHHHHHHHHhc---ccccccCCCCCcEEEeeCCCCCHHhH
Q 017125           74 E-------------------------------HGIV-NNWDDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANR  118 (377)
Q Consensus        74 ~-------------------------------~g~i-~d~~~~~~~~~~~~---~~~L~~~~~~~~vvl~~~~~~~~~~~  118 (377)
                      .                               .|.. ...+....+|+++.   ...|+.  .-..+++++|..++..+|
T Consensus        74 G~~~~d~~v~~~~~~~p~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qr  151 (605)
T 4b9q_A           74 GRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGE--PVTEAVITVPAYFNDAQR  151 (605)
T ss_dssp             TCBTTSHHHHHHHTTCSSEEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHTS--CCCEEEEEECTTCCHHHH
T ss_pred             CCCCCCHHHHHHhhcCCeEEEEcCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHH
Confidence            0                               1111 12234445555543   123433  345799999999999999


Q ss_pred             HHHHhhhcccCCCCeEEEechhhhhhhhcCC------ceEEEEeCCCCceEEEEeeCce----e---cccceEEecccHH
Q 017125          119 EKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIYEGY----A---LPHAILRLDLAGR  185 (377)
Q Consensus       119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~~v~~g~----~---~~~~~~~~~~GG~  185 (377)
                      +.+.+.+ +.+|++.+.++++|.||++++|.      .+.+|+|+|+++++++.+.-+.    .   +.......++||.
T Consensus       152 ~a~~~Aa-~~AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~  230 (605)
T 4b9q_A          152 QATKDAG-RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGE  230 (605)
T ss_dssp             HHHHHHH-HHTTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHH
T ss_pred             HHHHHHH-HHcCCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChH
Confidence            8877766 88999999999999999998863      4679999999999999886443    1   1122234689999


Q ss_pred             HHHHHHHHHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCC--C-c--EE
Q 017125          186 DLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPD--G-Q--VI  250 (377)
Q Consensus       186 ~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd--~-~--~i  250 (377)
                      ++++.+.+++..+     +.+......     ...++..|..++....            ......+...+  | .  .+
T Consensus       231 d~D~~l~~~l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~------------~~i~~~~~~~~~~g~~~~~~  298 (605)
T 4b9q_A          231 DFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQ------------TDVNLPYITADATGPKHMNI  298 (605)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSE------------EEEEEEEEEECSSSEEEEEE
T ss_pred             HHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCC------------eEEEEeeeccCCCCCeeEEE
Confidence            9999999888642     333321111     2345566665542210            00011111111  1 1  12


Q ss_pred             ecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEE
Q 017125          251 TIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIK  330 (377)
Q Consensus       251 ~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~  330 (377)
                      .++...|   |-++.|-     ...+.+.|.+++....  ....-++.|+||||+|++|++.+++++.+..        .
T Consensus       299 ~itr~~~---e~l~~~~-----~~~i~~~v~~~L~~a~--~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~--------~  360 (605)
T 4b9q_A          299 KVTRAKL---ESLVEDL-----VNRSIEPLKVALQDAG--LSVSDIDDVILVGGQTRMPMVQKKVAEFFGK--------E  360 (605)
T ss_dssp             EEEHHHH---HHHHHHH-----HHHTTHHHHHHHHHTT--CCGGGCSEEEEESGGGGSHHHHHHHHHHHTS--------C
T ss_pred             EEeHHHH---HHHHHHH-----HHHHHHHHHHHHHHcC--CCHHHCcEEEEeCCccCchHHHHHHHHHhcc--------C
Confidence            2222211   1122220     0013344445554332  1223457899999999999999999988832        2


Q ss_pred             EECCCCCccccchhhhhhhcc
Q 017125          331 VVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       331 v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      +....+|+.++-.||+++|..
T Consensus       361 ~~~~~nPdeaVA~GAai~a~~  381 (605)
T 4b9q_A          361 PRKDVNPDEAVAIGAAVQGGV  381 (605)
T ss_dssp             CCSSSCTTTHHHHHHHHHHHH
T ss_pred             cCCCcChhHHHHHhHHHHHHH
Confidence            334568899999999999874

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=99.74  E-value=1.3e-17  Score=158.06  Aligned_cols=172  Identities=16%  Similarity=0.232  Sum_probs=109.4

Q ss_pred             HHHHHhhhcccCCCCeEEEechhhhhhhhcC-------CceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHH
Q 017125          118 REKMTQIMFETFNTPAMYVAIQAVLSLYASG-------RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDA  190 (377)
Q Consensus       118 ~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-------~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~  190 (377)
                      .+.+.+.+ +.+|++...+..+|+|++.+++       ..+.+|||+|+++|+++.+.+|.++  .....++||.++++.
T Consensus       153 v~~~~~~~-~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~--~~~~~~~GG~~i~~~  229 (377)
T 2ych_A          153 VAGVLEAL-RGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPL--AVRVLTLSGKDFTEA  229 (377)
T ss_dssp             HHHHHHHH-HHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEE--EEEEESCSHHHHHHH
T ss_pred             HHHHHHHH-HHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEE--EEEeeechHHHHHHH
Confidence            35555444 8899999999999999998864       2457999999999999999999887  557889999999999


Q ss_pred             HHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEecCCccccccccCCCCccCC
Q 017125          191 LMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIG  270 (377)
Q Consensus       191 l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~  270 (377)
                      +.+.+   +.      ..+.++++|.+++....+..++          ...+.+++ ..+.++.+.  +.|++ +|.   
T Consensus       230 i~~~~---~~------~~~~aE~~K~~~~~~~~~~~~~----------~~~i~~~~-~~~~i~~~~--~~~~i-~~~---  283 (377)
T 2ych_A          230 IARSF---NL------DLLAAEEVKRTYGMATLPTEDE----------ELLLDFDA-ERERYSPGR--IYDAI-RPV---  283 (377)
T ss_dssp             HHHHT---TC------CHHHHHHHHHHTC------------------------------------C--HHHHH-HHH---
T ss_pred             HHHHh---CC------CHHHHHHHHhhccccccccccc----------cccccccc-ccccCCHHH--HHHHH-HHH---
Confidence            98743   22      2456899999988764321110          01111221 112222211  11111 110   


Q ss_pred             CCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHH
Q 017125          271 MESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIT  320 (377)
Q Consensus       271 ~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~  320 (377)
                        ...+.+.|.+++..++...+....++|+||||+|++||+.+++++.+.
T Consensus       284 --~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~  331 (377)
T 2ych_A          284 --LVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLG  331 (377)
T ss_dssp             --HHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhC
Confidence              112555566666655445556678999999999999999999999994

>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*

Probab=99.72  E-value=4.7e-18  Score=158.92  Aligned_cols=178  Identities=15%  Similarity=0.125  Sum_probs=126.7

Q ss_pred             CEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCcccc------C--------CCccceeccchhcccCcceeecccc
Q 017125            9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVG------M--------GQKDAYVGDEAQSKRGILTLKYPIE   74 (377)
Q Consensus         9 ~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~------~--------~~~~~~vg~~~~~~~~~~~~~~p~~   74 (377)
                      .+.||+|+.++|+-. ++ .-.+.+||.++.........+      .        .+..++||++|.         +|+.
T Consensus        23 ~igiDlG~~~tkv~~-~~-g~~~~~PSvva~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~vG~~A~---------~~l~   91 (346)
T 2fsj_A           23 VVGLDVGYGDTKVIG-VD-GKRIIFPSRWAVTETESWGIGGKIPVLSTDGGQTKFIYGKYASGNNIR---------VPQG   91 (346)
T ss_dssp             EEEEEECSSEEEEEC-GG-GCEEEEESCEEEECCSCC----CCCCBBSSTTSSEEEEGGGCCSSCCB---------CCSS
T ss_pred             EEEEecCCcceeEEe-cC-CCEEEecceeeeccccccCcCcceEEEEecccccccCCcEEEEcccee---------cccC
Confidence            689999999999863 33 234568888876654321100      0        134566786653         8899


Q ss_pred             CCccCCHHHHHHHHHHhccccc-ccCCCCCcEE--EeeCCCCCHHhHHHHHhhhccc-------------CCCCeEEEec
Q 017125           75 HGIVNNWDDMEKIWHHTFYNEL-RVAPEEHPVL--LTEAPLNPKANREKMTQIMFET-------------FNTPAMYVAI  138 (377)
Q Consensus        75 ~g~i~d~~~~~~~~~~~~~~~L-~~~~~~~~vv--l~~~~~~~~~~~~~l~~~lfe~-------------~~~~~v~~~~  138 (377)
                      .+.+.| +..+.++.+.+.+.. ........++  ++.|......+|+.+.+.+...             +++..+.+++
T Consensus        92 ~~~~~~-~~~~~ll~~~l~~~~~~~~~~~~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~  170 (346)
T 2fsj_A           92 DGRLAS-KEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRP  170 (346)
T ss_dssp             TTCTTS-TTTHHHHHHHHHHHCCCC---CEEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEE
T ss_pred             CCcccC-hhHHHHHHHHHHHhhhccCCCceEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEc
Confidence            999988 666666666664332 1112345689  9999988888888888776442             1256799999


Q ss_pred             hhhhhhhhc--C-----C-ceEEEEeCCCCceEEEEee--CceecccceEEecccHHHHHHHHHHHHHHc
Q 017125          139 QAVLSLYAS--G-----R-TTGIVLDSGDGVSHTVPIY--EGYALPHAILRLDLAGRDLTDALMKILTER  198 (377)
Q Consensus       139 ~~~~a~~~~--g-----~-~~~lVVDiG~~~t~v~~v~--~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~  198 (377)
                      +|.+|++++  +     . .+.+|||+|+++|+++.+.  +|.++.......++||.++++.+.+.++++
T Consensus       171 Ep~AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~~v~~~s~~~~lGg~~i~~~I~~~i~~~  240 (346)
T 2fsj_A          171 QGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGDAISALSRKIAKE  240 (346)
T ss_dssp             TTHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEETTTTEECGGGCEEESCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhhccccccccCCcEEEEECCCCcEEEEEEEecCCEEEeecCCCcchhHHHHHHHHHHHHHHH
Confidence            999999974  2     1 4569999999999999998  787766556788999999999998877543

>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*

Probab=99.69  E-value=1.9e-16  Score=151.27  Aligned_cols=200  Identities=11%  Similarity=0.136  Sum_probs=132.2

Q ss_pred             HHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHH
Q 017125          115 KANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD  189 (377)
Q Consensus       115 ~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~  189 (377)
                      +...+.+.+.+ +..|+....++.+|+|+++++..     .+.+|||+|+++|+++.+.+|.++  .....++||+++|+
T Consensus       167 ~~~v~n~~~~~-~~AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~g~~~--~~~~i~~GG~~it~  243 (419)
T 4a2a_A          167 LKVYEMFYNFL-QDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPI--KISYVPVGMKHVIK  243 (419)
T ss_dssp             HHHHHHHHHHH-HTTSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEETTEEE--EEEEESCCHHHHHH
T ss_pred             HHHHHHHHHHH-HHcCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEECCEEE--EEEecccHHHHHHH
Confidence            34555666655 88999999999999999998764     368999999999999999999988  56789999999999


Q ss_pred             HHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCC--C-cEEecCCccc-cccccCCC
Q 017125          190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPD--G-QVITIGAERF-RCPEVLFQ  265 (377)
Q Consensus       190 ~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd--~-~~i~i~~~~~-~~~E~lf~  265 (377)
                      .+...+.         ...+.+|++|.+++......           .....+.+|.  + ....++...+ .+.+..++
T Consensus       244 dIa~~l~---------~~~~~AE~iK~~~g~a~~~~-----------~~~~~i~v~~~~~~~~~~is~~~l~~ii~p~ve  303 (419)
T 4a2a_A          244 DVSAVLD---------TSFEESERLIITHGNAVYND-----------LKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLR  303 (419)
T ss_dssp             HHHHHHT---------CCHHHHHHHHHHHCCSCCTT-----------CCCCEEEEECTTSCSEEEEEHHHHHHHHHHHHH
T ss_pred             HHHHHHC---------CCHHHHHHHHHHhccCcccC-----------CCCceEEEeecCCccceEEcHHHHHHHHHHHHH
Confidence            9998762         13467999999988653210           1112233322  1 1112211111 11111111


Q ss_pred             CccCCCCCCChHHHHHHHHhcCCh----hHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEEC-----C--
Q 017125          266 PSMIGMESAGIHETTYNSIMKCDV----DIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA-----P--  334 (377)
Q Consensus       266 p~~~~~~~~~l~~~I~~~i~~~~~----~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~-----~--  334 (377)
                               .+.+.|.+.|+....    .......+.|+||||+|++||+.+.+++.+.      .++++..     |  
T Consensus       304 ---------ei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g------~~vri~~~~~~~p~~  368 (419)
T 4a2a_A          304 ---------EIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFK------SPVRTGCYANSDRPS  368 (419)
T ss_dssp             ---------HHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHT------SCEEECCGGGSSSCC
T ss_pred             ---------HHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHC------CCeEEEecCCCCchh
Confidence                     145555666655432    1145677899999999999999999999984      2456555     3  


Q ss_pred             --------CCCccccchhhhhhhccc
Q 017125          335 --------PERKYSVWIGGSILASLS  352 (377)
Q Consensus       335 --------~~~~~~~w~Gasi~a~l~  352 (377)
                              .+|.|++-.|-.+++...
T Consensus       369 ~~~~~~~~~~P~~~t~~Gl~~~~~~~  394 (419)
T 4a2a_A          369 IINADEVANDPSFAAAFGNVFAVSEN  394 (419)
T ss_dssp             CBTCHHHHTCGGGHHHHHTTCC----
T ss_pred             ccCcccccCCchHHHHHHHHHHHhhc
Confidence                    368899999988887653

>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A

Probab=99.55  E-value=7e-15  Score=136.09  Aligned_cols=178  Identities=12%  Similarity=0.148  Sum_probs=107.9

Q ss_pred             ccCCCCeEEEechhhhhhhhcC-----CceEEEEeCCCCceEEEEeeCcee-cccceEEecccHHHHHHHHHHHHHHcCC
Q 017125          127 ETFNTPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEGYA-LPHAILRLDLAGRDLTDALMKILTERGY  200 (377)
Q Consensus       127 e~~~~~~v~~~~~~~~a~~~~g-----~~~~lVVDiG~~~t~v~~v~~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~~~  200 (377)
                      +.+++..+.++++|++|+++++     ..+.+|||+|+++|+++.+.+|.+ +.......++||.++++.+.+.+.+++.
T Consensus       136 ~~~~i~~v~~~~e~~aa~~~~~~~~~~~~~~~vvDiGggttd~~v~~~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~~~~  215 (320)
T 2zgy_A          136 DTFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLART  215 (320)
T ss_dssp             CCCEEEEEEEEESSHHHHHHHHHHSCTTCEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTHHHHHHHHHHTTCCSB
T ss_pred             cEEEEEEEEEecCcHHHHHhhhccccCCCCEEEEEcCCCeEEEEEEeCCeeEEeeecCCccccHHHHHHHHHHHHHHcCC
Confidence            4566789999999999998763     357899999999999999999876 4334567799999999999999865433


Q ss_pred             CCcChhHHHHHHHH-HHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHH
Q 017125          201 SFTTTAEREIVRDM-KEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHET  279 (377)
Q Consensus       201 ~~~~~~~~~~~~~i-k~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~  279 (377)
                      ++    ....++++ |.+....   +...  ..          ..|..  +.   +.....+..+.         .+.+.
T Consensus       216 ~i----~~~~ae~~lk~~~~~~---~~~~--~i----------~~~~~--~~---~~~~~i~~~~~---------~~~~~  262 (320)
T 2zgy_A          216 KG----SSYLADDIIIHRKDNN---YLKQ--RI----------NDENK--IS---IVTEAMNEALR---------KLEQR  262 (320)
T ss_dssp             GG----GHHHHHHHHHTTTCHH---HHHH--HS----------SSSCT--HH---HHHHHHHHHHH---------HHHHH
T ss_pred             CC----CHHHHHHHHHHhhhhh---cccc--ee----------cCchh--hH---HHHHHHHHHHH---------HHHHH
Confidence            22    23456666 5542100   0000  00          00000  00   00000000101         13334


Q ss_pred             HHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017125          280 TYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       280 I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      |.+.+++.      ..++.|+||||+|.+  +.+.    +.+.++.. .-++..+++|+++.-.|+.++++
T Consensus       263 i~~~i~~~------~~~~~vvl~GGga~l--l~~~----l~~~~~~~-~~~~~~~~~P~~a~A~G~~~~~~  320 (320)
T 2zgy_A          263 VLNTLNEF------SGYTHVMVIGGGAEL--ICDA----VKKHTQIR-DERFFKTNNSQYDLVNGMYLIGN  320 (320)
T ss_dssp             HHHHHTTC------CCCCEEEEESTTHHH--HHHH----HHHTSCCC-GGGEECCSCGGGHHHHHHHHHHC
T ss_pred             HHHHHHhh------cCCCeEEEECChHHH--HHHH----HHHHhCCC-CCceeeCCCcHHHHHHHHHHhcC
Confidence            44444432      234789999999987  4444    44444321 00245577899999999998864

>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}

Probab=99.48  E-value=1.3e-14  Score=134.65  Aligned_cols=286  Identities=14%  Similarity=0.125  Sum_probs=162.8

Q ss_pred             CCCCCCCEEEeCCCCceEEeee--C---CCCCCCCCCceeeeeCCCC-------ccccCCCccceeccchhcccCcceee
Q 017125            3 DAEDIQPLVCDNGTGMVKAGFA--G---DDAPRAVFPSIVGRPRHTG-------VMVGMGQKDAYVGDEAQSKRGILTLK   70 (377)
Q Consensus         3 ~~~~~~~viiD~Gs~~~k~G~~--~---~~~P~~~~ps~~~~~~~~~-------~~~~~~~~~~~vg~~~~~~~~~~~~~   70 (377)
                      .+++...|.||+|-+++|+-..  +   +..-+..|||.++...+..       .....++..++||+.+...       
T Consensus         3 ~~~~~~iigiD~G~~~~K~~~~~~~g~~~~~~~~~FpS~v~~~~~~~~~~~~~~~~v~~~G~~Y~vG~~a~~~-------   75 (329)
T 4apw_A            3 NITNEYVMTLDAGKYETKLIGKNKKGTTEDIKRVIFKTKIYNLEDGYIDIEGNSHKIELDGKEYLIGEQGVED-------   75 (329)
T ss_dssp             --CCEEEEEEEECSSEEEEEEHHHHHHCCSSTTEEEESCCEECCEESCCCCCSCEEEECSSSEEEESCCSSSC-------
T ss_pred             CccCceEEEEecCCceEEEEeccCCCcccceeEEeecccccccccccccCCCCceEEEECCEEEEeCcccccc-------
Confidence            3455567899999999998753  2   1123357888877544321       1233456678888865321       


Q ss_pred             ccccCCccCCHHHHHHHHHHhcccccccC-CCCCcEEEeeCCCCCH--HhHHHHHhhhccc-------------CCCCeE
Q 017125           71 YPIEHGIVNNWDDMEKIWHHTFYNELRVA-PEEHPVLLTEAPLNPK--ANREKMTQIMFET-------------FNTPAM  134 (377)
Q Consensus        71 ~p~~~g~i~d~~~~~~~~~~~~~~~L~~~-~~~~~vvl~~~~~~~~--~~~~~l~~~lfe~-------------~~~~~v  134 (377)
                       -+....  +-+..+.++..++-+.+... ..+-.+++..|...-.  .+++.+.+.+-..             +.+..+
T Consensus        76 -~~~~~k--~~~~~~~L~l~Aia~~~~~~~~~~v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v  152 (329)
T 4apw_A           76 -SSETSK--TNLIHKLAAYTAITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDI  152 (329)
T ss_dssp             -SGGGCC--CTTHHHHHHHHHHHTTCCSSSEEEEEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEE
T ss_pred             -cccCCc--CchhHHHHHHHHHHHHhccccCceEEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEE
Confidence             111112  12234444444442334322 1223466666655432  2444555544321             224578


Q ss_pred             EEechhhhhhhhcC----CceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHH-c-CCCCcChhHH
Q 017125          135 YVAIQAVLSLYASG----RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTE-R-GYSFTTTAER  208 (377)
Q Consensus       135 ~~~~~~~~a~~~~g----~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~-~-~~~~~~~~~~  208 (377)
                      .+.|++..+.+...    ..+.+|||+|+++|+++.+.+|.++.......++||.++++.+.+.+++ + +..+..    
T Consensus       153 ~v~pe~~ga~~~~~~~~~~~~v~vvDiGggTtd~~v~~~g~~~~~~~~~~~~G~~~~~~~i~~~l~~~~~g~~i~~----  228 (329)
T 4apw_A          153 TIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSLYRNCVVNPSERFIEEHGVKDLIIRVGDALTDLNNGNLITN----  228 (329)
T ss_dssp             EEEEHHHHHHHHSCCCCTTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHTSSSSCSSCSCTTS----
T ss_pred             EEEeccHHHHhhcchhhccCCEEEEEeCCCcEEEEEEECCEEeeccccchhhHHHHHHHHHHHHHHhhccCCCCCH----
Confidence            99999999988762    3578999999999999999999998766678999999999999988865 2 222221    


Q ss_pred             HHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhc--
Q 017125          209 EIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMK--  286 (377)
Q Consensus       209 ~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~--  286 (377)
                      ..++++|.. +.+..                      .+....+..+  .+.+.+          ..+.+.|.+.+++  
T Consensus       229 ~~~e~i~~~-g~~~~----------------------g~~~~~~~~~--~i~~~~----------~e~~~~I~~~i~~~~  273 (329)
T 4apw_A          229 EQAESALNN-GYMKK----------------------GGEIDTESST--VIKKVK----------EKFLKDAIKLIEKRG  273 (329)
T ss_dssp             BTTTTCSSS-CSSCE----------------------ECTTCCSTTH--HHHHHH----------HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhc-CCccc----------------------CCcchhHHHH--HHHHHH----------HHHHHHHHHHHHHcC
Confidence            123333332 11100                      0000000000  000000          0123334444432  


Q ss_pred             CChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          287 CDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       287 ~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      +|.    .+.+.|+||||+|.+  +.+.+++++    +.    ++...++|.++.-.|+-.++..
T Consensus       274 ~~~----~~~~~IvltGGGA~l--~~~~l~~~~----~~----~v~v~~~P~~a~a~G~~~~~~~  324 (329)
T 4apw_A          274 FKL----DQLDSLIFIGGTTQK--LKEQISKTY----PN----NSIITNNSQWTTCEGLYKVAVA  324 (329)
T ss_dssp             CCT----TSCSEEEEESTTHHH--HHHHHHHHS----TT----CEECCSSGGGHHHHHHHHHHHH
T ss_pred             CCH----HHccEEEEECChHHH--HHHHHHHHc----CC----CCEecCCChhhHHHHHHHHHhh
Confidence            332    346899999999998  445555543    32    2445678999999999887654

>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}

Probab=99.43  E-value=1.7e-13  Score=128.18  Aligned_cols=185  Identities=13%  Similarity=0.159  Sum_probs=118.5

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCc---------------cccCCCcc-ceeccchhcccCcceeec
Q 017125            8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV---------------MVGMGQKD-AYVGDEAQSKRGILTLKY   71 (377)
Q Consensus         8 ~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~---------------~~~~~~~~-~~vg~~~~~~~~~~~~~~   71 (377)
                      -.|.||+|-.++|+ ..++  -.+.|||.++...+...               ....+... ++||+.|......  ..+
T Consensus         5 ~iigiD~G~~~~K~-~~~~--~~~~fPS~v~~~~~~~~~l~~~~~~~~~~~~v~v~~~~~~~y~vG~~A~~~~~~--~~~   79 (355)
T 3js6_A            5 YVMALDFGNGFVKG-KIND--EKFVIPSRIGRKTNENNQLKGFVDNKLDVSEFIINGNNDEVLLFGNDLDKTTNT--GKD   79 (355)
T ss_dssp             EEEEEEECSSEEEE-EETT--EEEEEESEEEECCSSCCSSTTTSCCCCSCEEEEETTCTTCCEEESTTHHHHCSC--CEE
T ss_pred             EEEEEEcCCCcEEE-ecCC--eEEEeceeeeecccCcccccccccCCCCceEEEEecCCeEEEEEchhhhhcCcc--ccc
Confidence            47899999999996 4444  24678998875433211               11123445 8899877543111  112


Q ss_pred             cc-cCCccCCHHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhH-HHHHhhhccc-----------CCCCeEE
Q 017125           72 PI-EHGIVNNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR-EKMTQIMFET-----------FNTPAMY  135 (377)
Q Consensus        72 p~-~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~-~~l~~~lfe~-----------~~~~~v~  135 (377)
                      .+ ......+-+ .+.++..++.   ..+.....+-.+++..|.......+ +.+.+.+...           +.+..|.
T Consensus        80 ~~~~~~k~~~~~-~~iL~l~Ala~~~~~~~~~~~~~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~  158 (355)
T 3js6_A           80 TASTNDRYDIKS-FKDLVECSIGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVK  158 (355)
T ss_dssp             CCCSTTGGGSHH-HHHHHHHHHHHHHTTSCSSEEEEEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEE
T ss_pred             ccccCCcccCHH-HHHHHHHHHHHHHHhccCCCceEEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEE
Confidence            22 233333322 2222222221   1111111123578888887766665 4666666432           2236899


Q ss_pred             EechhhhhhhhcC-----------CceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHc
Q 017125          136 VAIQAVLSLYASG-----------RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER  198 (377)
Q Consensus       136 ~~~~~~~a~~~~g-----------~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~  198 (377)
                      ++++|.+|+++++           ..+.+|||+|+.+|+++.+.+|.++......+++||..+++.+.+.++++
T Consensus       159 v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGggTtd~~v~~~~~~~~~~s~s~~~G~~~~~~~i~~~l~~~  232 (355)
T 3js6_A          159 IVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVINKGTIDFYKRIASHVSKK  232 (355)
T ss_dssp             EEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHTC--
T ss_pred             EEeCcHHHHHHHHHccCccccccccCcEEEEEeCCCcEEEEEEcCCEEccccccCcchHHHHHHHHHHHHHHHh
Confidence            9999999999874           35679999999999999999999987777889999999999999998654

>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A

Probab=99.02  E-value=4.4e-10  Score=106.87  Aligned_cols=181  Identities=12%  Similarity=0.105  Sum_probs=108.5

Q ss_pred             chhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHH
Q 017125          138 IQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVR  212 (377)
Q Consensus       138 ~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~  212 (377)
                      .+|.||.+++=.     ...++||+|+++|+++.+.+|..+  +...+++||+++|..+..-|.        ..+...+|
T Consensus       390 ~ep~AAglaaLTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv--~a~~ip~gG~~VT~DIA~~Lg--------t~d~~~AE  459 (610)
T 2d0o_A          390 AEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDI--IATHLAGAGDMVTMIIARELG--------LEDRYLAE  459 (610)
T ss_dssp             EHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCE--EEEEEECSHHHHHHHHHHHHT--------CCCHHHHH
T ss_pred             ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEE--EEEEeccchHHHHHHHHHHhC--------CCCHHHHH
Confidence            788888777632     368999999999999999999888  777899999999999999982        11367899


Q ss_pred             HHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEec--CCc-cccccc-cCCCCcc-CCCCCCC--hHH--HHHHH
Q 017125          213 DMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITI--GAE-RFRCPE-VLFQPSM-IGMESAG--IHE--TTYNS  283 (377)
Q Consensus       213 ~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i--~~~-~~~~~E-~lf~p~~-~~~~~~~--l~~--~I~~~  283 (377)
                      +||. |+.+....             ... ...+...+++  .+. ...++. .+..|+. ... .+.  +.|  ++.+.
T Consensus       460 rIK~-YG~A~ve~-------------lf~-~~dede~Iev~~~~lgp~~~~Rv~~~~~~~L~~I-~pR~~vEElelVR~~  523 (610)
T 2d0o_A          460 EIKK-YPLAKVES-------------LFH-LRHEDGSVQFFSTPLPPAVFARVCVVKADELVPL-PGDLALEKVRAIRRS  523 (610)
T ss_dssp             HHHH-SCEEEECS-------------SSE-EEETTSCEEECSSCCCGGGTTCEEEECSSCEEEC-CTTCCHHHHHHHHHH
T ss_pred             Hhcc-cCceeecc-------------ccc-ccCCCCeEEEecCCCCcceeeeeecccccceeee-CCCcchHHHHHHHHH
Confidence            9999 88765331             000 0001111111  000 001111 0000111 011 122  333  33333


Q ss_pred             HhcC---ChhHHH-----Hh-----hcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECC-----CCCccccchhh
Q 017125          284 IMKC---DVDIRK-----DL-----YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP-----PERKYSVWIGG  345 (377)
Q Consensus       284 i~~~---~~~~~~-----~l-----~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~-----~~~~~~~w~Ga  345 (377)
                      +++.   -..+|.     .+     +..||||||+|+++|+.+-.++.|..+     .+++-.+     ..|.|++-.|-
T Consensus       524 ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI~ElA~~iL~~y-----~VRiGrP~~~gv~gP~fAtAvGL  598 (610)
T 2d0o_A          524 AKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHY-----RLVAGRGNIRGSEGPRNAVATGL  598 (610)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTS-----SCEEEECCGGGTSTTSCHHHHHH
T ss_pred             HhhhhhhHHHHHhcCCccCCCcccccCCEEEeCchhhcccHHHHHHHHhCcC-----CeEEecCCccccCCCcHHHHHHH
Confidence            2111   001111     11     256999999999999999999988662     4455443     36889888886


Q ss_pred             hhhh
Q 017125          346 SILA  349 (377)
Q Consensus       346 si~a  349 (377)
                      .+|-
T Consensus       599 lly~  602 (610)
T 2d0o_A          599 ILSW  602 (610)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6553

>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6

Probab=98.99  E-value=4.2e-10  Score=107.36  Aligned_cols=180  Identities=12%  Similarity=0.128  Sum_probs=107.3

Q ss_pred             chhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHH
Q 017125          138 IQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVR  212 (377)
Q Consensus       138 ~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~  212 (377)
                      .+|.||.+++=.     ...++||+|+++|+++.+.+|..+  +...+++||+++|..+..-|.        ..+...+|
T Consensus       392 ~ep~AA~laaLTedE~elGvaiIDmGgGTTd~sVf~~g~lv--~a~~ip~gG~~VT~DIA~~Lg--------~~d~~~AE  461 (607)
T 1nbw_A          392 VEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQI--TAVHLAGAGNMVSLLIKTELG--------LEDLSLAE  461 (607)
T ss_dssp             CHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCE--EEEEEECCHHHHHHHHHHHHT--------CSCHHHHH
T ss_pred             ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEE--EEEEeccchHHHHHHHHHHhC--------CCCHHHHH
Confidence            677787776632     368999999999999999999888  777899999999999999982        11367899


Q ss_pred             HHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEec--CCc-cccccc-cCCCCc-cCCCCCCC--hHH--HHHHH
Q 017125          213 DMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITI--GAE-RFRCPE-VLFQPS-MIGMESAG--IHE--TTYNS  283 (377)
Q Consensus       213 ~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i--~~~-~~~~~E-~lf~p~-~~~~~~~~--l~~--~I~~~  283 (377)
                      +||. |+.+....             .... ..+...+++  .+. ...++. .+..|+ +... .+.  +.|  ++.+.
T Consensus       462 rIK~-YG~A~~e~-------------lf~~-~dede~Iev~~~~lgp~~~~R~~~~~~~~L~~I-~~R~~vEElelVR~~  525 (607)
T 1nbw_A          462 AIKK-YPLAKVES-------------LFSI-RHENGAVEFFREALSPAVFAKVVYIKEGELVPI-DNASPLEKIRLVRRQ  525 (607)
T ss_dssp             HHHH-SCEEEECS-------------SSEE-EETTSCEEECSSCCCGGGTTCEEEEETTEEEEE-CCSSCHHHHHHHHHH
T ss_pred             Hhcc-cCceeecc-------------cccc-cCCCCeEEEecCCCCcceeeeeecccccceeee-CCCcchHHHHHHHHH
Confidence            9999 88765331             0000 001111111  000 000111 000000 0011 111  333  33333


Q ss_pred             HhcC---ChhHHH----------HhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECC-----CCCccccchhh
Q 017125          284 IMKC---DVDIRK----------DLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP-----PERKYSVWIGG  345 (377)
Q Consensus       284 i~~~---~~~~~~----------~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~-----~~~~~~~w~Ga  345 (377)
                      +++.   -..+|.          ..+..||||||+|+++|+.+-.++.|..+     .+++-.+     ..|.|++-.|-
T Consensus       526 ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL~~~-----~VRiGrP~~~g~~gP~fAtAvGL  600 (607)
T 1nbw_A          526 AKEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHY-----GVVAGQGNIRGTEGPRNAVATGL  600 (607)
T ss_dssp             HHHHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTT-----TCEEEECCGGGTSCSCCHHHHHH
T ss_pred             HhhhhhhHHHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHhCcC-----CeEEecCCccccCCchHHHHHHH
Confidence            1111   001111          11256999999999999999999999773     3444433     36788888886


Q ss_pred             hhh
Q 017125          346 SIL  348 (377)
Q Consensus       346 si~  348 (377)
                      .+|
T Consensus       601 lly  603 (607)
T 1nbw_A          601 LLA  603 (607)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            655

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=98.63  E-value=3.8e-08  Score=88.68  Aligned_cols=172  Identities=17%  Similarity=0.202  Sum_probs=94.1

Q ss_pred             eEEEechhhhhhhhcC---CceEEEEeCCCCceEEEEe-eCceeccc-ceEEecccHHHHHHHHHHHHHHcCCCCcChhH
Q 017125          133 AMYVAIQAVLSLYASG---RTTGIVLDSGDGVSHTVPI-YEGYALPH-AILRLDLAGRDLTDALMKILTERGYSFTTTAE  207 (377)
Q Consensus       133 ~v~~~~~~~~a~~~~g---~~~~lVVDiG~~~t~v~~v-~~g~~~~~-~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~  207 (377)
                      .+..++++.+++++..   .....|+|+|++++.++-+ .+|..... ...+..-|+-++.+.+.+.|   +.+++....
T Consensus        73 ~~~~Vne~~aha~a~~~~~~~~~~vl~lgG~~~~~~~~~~~g~~~~~~~~~~~~~g~G~f~d~~a~~l---~~~~~~~~~  149 (276)
T 4ehu_A           73 ADKQISELSCHARGVNFIIPETRTIIDIGGQDAKVLKLDNNGRLLNFLMNDKCAAGTGRFLDVMAKII---EVDVSELGS  149 (276)
T ss_dssp             CSEECCHHHHHHHHHHHHSTTCCEEEEECSSCEEEEEECTTSCEEEEEEECSCSTTSHHHHHHHHHHH---TCCGGGHHH
T ss_pred             CCcccchHHHHHHHHHHhCCCCCeEEEEcCCCceEEEEEecCceEEEEeCCCcCcchhhHHHHHHHHh---ccChhhhHH
Confidence            4567889888877663   3456889999999988877 45544311 12345667777777777766   344332111


Q ss_pred             HHHHHHHHH-----hcceeccCHHHHHHHhccCCCcceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHH
Q 017125          208 REIVRDMKE-----KLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYN  282 (377)
Q Consensus       208 ~~~~~~ik~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~  282 (377)
                        ....-+.     ..|.+.  ...+......           .+         ... |         +-..++.+.|.+
T Consensus       150 --~~~~a~~~~~i~~~~~~f--~~s~~~~~~~-----------~~---------~~~-~---------di~a~~~~~v~~  195 (276)
T 4ehu_A          150 --ISMNSQNEVSISSTCTVF--AESEVISHLS-----------EN---------AKI-E---------DIVAGIHTSVAK  195 (276)
T ss_dssp             --HHTTCSSCCCCCCCSHHH--HHHHHHHHHH-----------TT---------CCH-H---------HHHHHHHHHHHH
T ss_pred             --HHhcCCCCCCcCCccchh--hhhHHHHhhh-----------cc---------ccH-H---------HHHHHHHHHHHH
Confidence              0000000     000000  0000000000           00         000 0         001123333433


Q ss_pred             HHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          283 SIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       283 ~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      .+..  .-.+....+.|+++||.|..|+++++|++.+.        .++..|++|++..-.||+++|.-
T Consensus       196 ~l~~--~~~~~~~~~~vvl~GGva~n~~lr~~l~~~~g--------~~~~~p~~p~~~~A~GAAl~A~~  254 (276)
T 4ehu_A          196 RVSS--LVKRIGVQRNVVMVGGVARNSGIVRAMAREIN--------TEIIVPDIPQLTGALGAALYAFD  254 (276)
T ss_dssp             HHHH--HHHHHCCCSSEEEESGGGGCHHHHHHHHHHHT--------SCEECCSSGGGHHHHHHHHHHHH
T ss_pred             HHHH--HHHhcccCCeEEEecCccchHHHHHHHHHHHC--------CCeeeCCCcchHHHHHHHHHHHH
Confidence            3322  12233445789999999999999999988772        25677888999988999999853

>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5

Probab=97.84  E-value=5.7e-05  Score=67.45  Aligned_cols=47  Identities=17%  Similarity=0.388  Sum_probs=38.9

Q ss_pred             cCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          297 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       297 ~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      +.|+++||.++-|++.+.+.+.|..        ++..+++++++.-+||+++|..
T Consensus       210 ~~i~~~GG~a~n~~~~~~~~~~lg~--------~v~~p~~~~~~~AlGAAl~A~~  256 (270)
T 1hux_A          210 KDVVMTGGVAQNYGVRGALEEGLGV--------EIKTSPLAQYNGALGAALYAYK  256 (270)
T ss_dssp             SSEEEESGGGGCHHHHHHHHHHHCS--------CEECCGGGGGHHHHHHHHHHHH
T ss_pred             CeEEEeCccccCHHHHHHHHHHHCC--------CeEeCCCcchHhHHHHHHHHHH
Confidence            6799999999999999999988832        3555667788889999999854

>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*

Probab=96.86  E-value=0.002  Score=58.67  Aligned_cols=76  Identities=14%  Similarity=0.102  Sum_probs=54.5

Q ss_pred             CHHhHHHHHhhhcccCCCCeEEEechhh---hhhh----hcC-CceEEEEeCCCCceEEEEeeCceecccceEEecccHH
Q 017125          114 PKANREKMTQIMFETFNTPAMYVAIQAV---LSLY----ASG-RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR  185 (377)
Q Consensus       114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~---~a~~----~~g-~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~  185 (377)
                      .-.+++.+++.+.+..|++ +.++...-   ++..    ..+ ..+++|||+|+++|.++-..++.+.  .....|+|+-
T Consensus        95 ~A~N~~~fl~~v~~~~G~~-i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~--~~~Sl~~G~v  171 (315)
T 1t6c_A           95 RAKNAEEFLERVKREVGLV-VEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKGYKVR--EVISLPIGIV  171 (315)
T ss_dssp             TSTTHHHHHHHHHHHTCCC-EEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEETTEEE--EEEEECCCHH
T ss_pred             cCcCHHHHHHHHHHHHCCC-EEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEeCCcee--eEEEEeccHH
Confidence            3455667777777778876 34444322   2221    123 5689999999999999999999886  5678999999


Q ss_pred             HHHHHHH
Q 017125          186 DLTDALM  192 (377)
Q Consensus       186 ~i~~~l~  192 (377)
                      .+++.+.
T Consensus       172 ~l~e~~~  178 (315)
T 1t6c_A          172 NLTETFF  178 (315)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhc
Confidence            9888763

>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10

Probab=96.73  E-value=0.0059  Score=54.82  Aligned_cols=51  Identities=12%  Similarity=0.096  Sum_probs=39.7

Q ss_pred             HHhhhcccCCCCeEEEechhhhhhhhc-----CCceEEEEeCCCCceEEEEeeCceecc
Q 017125          121 MTQIMFETFNTPAMYVAIQAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYALP  174 (377)
Q Consensus       121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-----g~~~~lVVDiG~~~t~v~~v~~g~~~~  174 (377)
                      +.+.+ +.+++| |.+.++.-+++++.     +..+.++|-+|.+ +-...+.||+++.
T Consensus        87 l~~~l-~~~~~p-v~v~NDa~aaa~~e~~~~~~~~~~v~l~~GtG-iG~giv~~G~l~~  142 (292)
T 2gup_A           87 WYEAL-SSYQLP-VHLENDANCVGLSELLAHPELENAACVVIGTG-IGGAMIINGRLHR  142 (292)
T ss_dssp             HHHHT-GGGCCC-EEEEEHHHHHHHHHHHHCTTCSSEEEEEESSS-EEEEEEETTEEEC
T ss_pred             HHHHH-HHcCCC-EEEechHHHHHHHHHHhcCCCCeEEEEEECCc-eEEEEEECCEEEe
Confidence            55666 778887 78899999888873     5678999999976 6677778988764

>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14

Probab=96.44  E-value=0.02  Score=51.10  Aligned_cols=52  Identities=17%  Similarity=-0.018  Sum_probs=41.8

Q ss_pred             HhhcCceeccC-CcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017125          294 DLYGNIVLSGG-STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       294 ~l~~nIvl~GG-~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      .-+++|+++|| .+..|++.++|.+.+.-.     ..++.-+++++|..-+||+++++
T Consensus       235 ~~i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~-----~~~~~~p~~~~~~gAlGAaL~~~  287 (287)
T 2ews_A          235 FKTENIVYIGSSFHNNALLRKVVEDYTVLR-----GCKPYYVENGAFSGAIGALYLEK  287 (287)
T ss_dssp             TTCCEEEEESGGGTTCHHHHHHHHHHHHHT-----TCEEEECTTGGGHHHHHHHHTCC
T ss_pred             CCCCeEEEeCCchhcCHHHHHHHHHHHhhC-----CceEEECCCccHHHHHHHHHhCC
Confidence            33467999999 999999999999776442     34667788899999999998763

>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}

Probab=96.43  E-value=0.0015  Score=59.46  Aligned_cols=73  Identities=18%  Similarity=0.208  Sum_probs=50.8

Q ss_pred             HhHHHHHhhhcccCCCCeEEEec---hhhhhhh----hcC--CceEEEEeCCCCceEEEEeeCceecccceEEecccHHH
Q 017125          116 ANREKMTQIMFETFNTPAMYVAI---QAVLSLY----ASG--RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD  186 (377)
Q Consensus       116 ~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~----~~g--~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~  186 (377)
                      .++..+++.+.+..|++ +.+++   ++-++.+    +..  ..+++|+|||+++|.++.+.++.+.  ....+|+|.-.
T Consensus        89 ~N~~~fl~~i~~~tG~~-i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vr  165 (315)
T 3mdq_A           89 SNKQVLIDRIKKEVNID-VEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGNKNEIL--WKQSFEIGGQR  165 (315)
T ss_dssp             TTHHHHHHHHHHHHCCC-EEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEECSSCEE--EEEEESCCHHH
T ss_pred             cCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEECCeEe--eeEEEechhhH
Confidence            45556777776777876 33443   3322221    122  3579999999999999999999887  66789999887


Q ss_pred             HHHHH
Q 017125          187 LTDAL  191 (377)
Q Consensus       187 i~~~l  191 (377)
                      +++.+
T Consensus       166 l~e~f  170 (315)
T 3mdq_A          166 LIDRF  170 (315)
T ss_dssp             HHHHS
T ss_pred             HHHHh
Confidence            77654

>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*

Probab=96.08  E-value=0.084  Score=47.91  Aligned_cols=46  Identities=17%  Similarity=0.160  Sum_probs=35.6

Q ss_pred             ccCCCCeEEEechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCceecc
Q 017125          127 ETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP  174 (377)
Q Consensus       127 e~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~  174 (377)
                      +.+++| |.+.++.-+++++.       +..+.++|-+|.+ .-...+.||+++.
T Consensus        94 ~~~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii~~G~l~~  146 (321)
T 3vgl_A           94 QRVGLP-VVVENDANAAAWGEYRFGAGQGHDDVICITLGTG-LGGGIIIGNKLRR  146 (321)
T ss_dssp             HHHCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEECC
T ss_pred             hhhCCC-EEEEehhhhHHHHHHHhCCCCCCCCEEEEEeCcc-eEEEEEECCEEec
Confidence            456787 88999988887752       4578899999976 7777788998764

>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}

Probab=96.07  E-value=0.042  Score=50.11  Aligned_cols=53  Identities=21%  Similarity=0.233  Sum_probs=37.3

Q ss_pred             CceeccCCcCCcChHHHHHHHHHhhCCC-CceEEEECCCCCccccchhhhhhhc
Q 017125          298 NIVLSGGSTMFPGIADRMSKEITALAPS-SMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       298 nIvl~GG~s~i~g~~~rl~~eL~~~~~~-~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      .|||.||.+..+-|.+++++.+.+.... ...++|..+.-.+.+.-+||+.++-
T Consensus       272 ~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~l  325 (327)
T 4db3_A          272 VVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGAAFLNI  325 (327)
T ss_dssp             EEEEESGGGGCTHHHHHHHHHGGGGSCTTCCCCEEEECSCGGGHHHHHHHHTTC
T ss_pred             EEEEeCcccchHHHHHHHHHHHHHHhccccCCCEEEECCCCCcHHHHHHHHHHh
Confidence            6889999888877888888888776532 2245565554455677889887653

>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}

Probab=95.97  E-value=0.0032  Score=58.00  Aligned_cols=75  Identities=17%  Similarity=0.195  Sum_probs=49.8

Q ss_pred             HhHHHHHhhhcccCCCCeEEEec---hhhhhhhhc----C----CceEEEEeCCCCceEEEEeeC--ceec--ccceEEe
Q 017125          116 ANREKMTQIMFETFNTPAMYVAI---QAVLSLYAS----G----RTTGIVLDSGDGVSHTVPIYE--GYAL--PHAILRL  180 (377)
Q Consensus       116 ~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~~~----g----~~~~lVVDiG~~~t~v~~v~~--g~~~--~~~~~~~  180 (377)
                      .+++.+++.+.+..|++ +.+++   ++.++..+.    .    ...++|+|||+++|.++.+.+  +.+.  ......+
T Consensus       102 ~N~~~fl~~v~~~tGi~-ieVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~~~~~Sl  180 (343)
T 3cer_A          102 ENREEFEDEIERILGVR-PEVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQVQGAFSM  180 (343)
T ss_dssp             TTHHHHHHHHHHHHSSC-CEECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSCSEEEEE
T ss_pred             cCHHHHHHHHHHHHCCC-EEEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeecCccCcccccceeEEE
Confidence            44566777776777775 33443   333332221    2    256999999999999998877  4331  1256789


Q ss_pred             cccHHHHHHHH
Q 017125          181 DLAGRDLTDAL  191 (377)
Q Consensus       181 ~~GG~~i~~~l  191 (377)
                      |+|+..+++.+
T Consensus       181 plG~v~lt~~~  191 (343)
T 3cer_A          181 NIGSVRMTERH  191 (343)
T ss_dssp             SCCHHHHHHHT
T ss_pred             ehhHHHHHHHh
Confidence            99999988876

>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*

Probab=95.81  E-value=0.024  Score=55.17  Aligned_cols=73  Identities=12%  Similarity=0.095  Sum_probs=51.7

Q ss_pred             HhHHHHHhhhcccCCCCeEEEech---hhhhhhh----cC-CceEEEEeCCCCceEEEEeeCceecccceEEecccHHHH
Q 017125          116 ANREKMTQIMFETFNTPAMYVAIQ---AVLSLYA----SG-RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL  187 (377)
Q Consensus       116 ~~~~~l~~~lfe~~~~~~v~~~~~---~~~a~~~----~g-~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i  187 (377)
                      .++..+++.+.+..|++ |.+++.   +-+...+    .. ...++|+|||+++|.++-..++.+.  .....|+|.-.+
T Consensus        96 ~N~~~fl~~i~~~tG~~-i~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl  172 (513)
T 1u6z_A           96 LNATDFLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI--LVESRRMGCVSF  172 (513)
T ss_dssp             TTHHHHHHHHTTTCSSC-EEECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEEEETTEEE--EEEEESCCHHHH
T ss_pred             cCHHHHHHHHHHHHCCC-EEEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEEEeCCeee--EEEEEeccHHHH
Confidence            45567777777888876 344442   2222221    12 2379999999999999999888877  567899999888


Q ss_pred             HHHH
Q 017125          188 TDAL  191 (377)
Q Consensus       188 ~~~l  191 (377)
                      ++.+
T Consensus       173 te~f  176 (513)
T 1u6z_A          173 AQLY  176 (513)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7765

>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}

Probab=95.73  E-value=0.043  Score=53.29  Aligned_cols=73  Identities=21%  Similarity=0.207  Sum_probs=51.4

Q ss_pred             HHhHHHHHhhhcccCCCCeEEEec---hhhhhhh----hcCCceEEEEeCCCCceEEEEeeCceecccceEEecccHHHH
Q 017125          115 KANREKMTQIMFETFNTPAMYVAI---QAVLSLY----ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL  187 (377)
Q Consensus       115 ~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~----~~g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i  187 (377)
                      -.++..+++.+.+..|++ |.+++   ++-+...    +.....++|||||+++|.++-+.+|.+.  .....|+|.-.+
T Consensus        99 A~N~~~fl~~i~~~tG~~-ievIsG~EEA~l~~~gv~~~~~~~~~lvvDIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl  175 (508)
T 3hi0_A           99 AENGPDFIREAEAILGCE-IEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKDKSCG--EGITLPLGGLRL  175 (508)
T ss_dssp             STTHHHHHHHHHHHHTSC-EEECCHHHHHHHHHHHHHHHSSSCEEEEEEECSSCEEEEEEETTEEC--CCEEESCCHHHH
T ss_pred             CcCHHHHHHHHHHHHCCC-eEEecHHHHHHHHHHHHHhcCCCCCeEEEEeCCCceEEEEeeCCeee--eEEEecceEEeh
Confidence            355566777776778876 34443   2222222    2233578999999999999999999887  667889999877


Q ss_pred             HHH
Q 017125          188 TDA  190 (377)
Q Consensus       188 ~~~  190 (377)
                      ++.
T Consensus       176 ~e~  178 (508)
T 3hi0_A          176 SEQ  178 (508)
T ss_dssp             HHH
T ss_pred             hhc
Confidence            763

>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}

Probab=95.67  E-value=0.042  Score=49.97  Aligned_cols=46  Identities=17%  Similarity=0.163  Sum_probs=35.5

Q ss_pred             ccC-CCCeEEEechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCceecc
Q 017125          127 ETF-NTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP  174 (377)
Q Consensus       127 e~~-~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~  174 (377)
                      +.+ ++| |++.++.-+++++-       +..+.++|-+|.+ .-...|.||+++.
T Consensus       115 ~~~~~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~gii~~G~l~~  168 (321)
T 3r8e_A          115 SEFPHIH-FKIENDAKCAALGEYYFGENKRMQTFILLALGTG-VGSGVMMNGKLFI  168 (321)
T ss_dssp             HHCTTSE-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEECC
T ss_pred             HHcCCCC-EEEEchHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEECCEEec
Confidence            456 776 78889988887652       4578999999976 7777788998875

>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}

Probab=95.43  E-value=0.31  Score=43.55  Aligned_cols=52  Identities=12%  Similarity=0.204  Sum_probs=38.3

Q ss_pred             CceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          298 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       298 nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      .|||.||.+..+.|.+++++.+......  .+++..+.-.+.+.-.||+.++..
T Consensus       240 ~IvlgGgi~~~~~~~~~l~~~l~~~~~~--~~~i~~s~lg~~a~~~GAa~l~~~  291 (297)
T 4htl_A          240 HIFIGGGITSRPTFIAELKHHMESFGLR--DTIIETATHKNQAGLLGAVYHFLQ  291 (297)
T ss_dssp             EEEEESGGGGSTTHHHHHHHHHTTTCCT--TCEEEECSCTTTHHHHHHHHHHHH
T ss_pred             EEEEeCcccccHHHHHHHHHHHHHhccC--CCeEEECCcCChHHHHhHHHHHHH
Confidence            5899999999999999999999866543  234544444466788899877643

>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}

Probab=95.28  E-value=0.13  Score=46.24  Aligned_cols=54  Identities=15%  Similarity=0.108  Sum_probs=36.2

Q ss_pred             CceeccCCc-CC-cChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          298 NIVLSGGST-MF-PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       298 nIvl~GG~s-~i-~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      .|||.||.+ .. +-|.+++++.+.+........++..+.-.+.+.-+||+.++-.
T Consensus       240 ~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~~~  295 (302)
T 3vov_A          240 VVVLGGGVALNAPEGYWEALLEAYRRYLQGWEAPPLRRARLGAEAGLLGAALTAYL  295 (302)
T ss_dssp             EEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCCCCEEECSSGGGHHHHHHHHHHHH
T ss_pred             EEEEeChhHhhhhHHHHHHHHHHHHHhcchhcCCcEEEcCCCCcHHHHHHHHHHHH
Confidence            588888887 66 4588999999988764332233444444456778899877643

>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}

Probab=95.13  E-value=0.062  Score=48.75  Aligned_cols=46  Identities=15%  Similarity=0.183  Sum_probs=35.3

Q ss_pred             ccCCCCeEEEechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCceecc
Q 017125          127 ETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP  174 (377)
Q Consensus       127 e~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~  174 (377)
                      +.+++| |.+.++.-+++++.       +..+.++|-+|.+ +-...+.||+++.
T Consensus       106 ~~~~~p-v~v~ND~~aaa~~e~~~g~~~~~~~~~~l~~GtG-iG~giv~~G~l~~  158 (326)
T 2qm1_A          106 SALGIP-FALDNDANVAALGERWKGAGENNPDVIFITLGTG-VGGGIVAAGKLLH  158 (326)
T ss_dssp             HHHCSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEEETTEECC
T ss_pred             HHhCCC-EEEecHHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEECCEEee
Confidence            446777 78899998887752       4578999999987 6677788988764

>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*

Probab=95.09  E-value=0.063  Score=49.33  Aligned_cols=56  Identities=9%  Similarity=0.067  Sum_probs=41.3

Q ss_pred             HHHhhcCceeccC-CcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhh
Q 017125          292 RKDLYGNIVLSGG-STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA  349 (377)
Q Consensus       292 ~~~l~~nIvl~GG-~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a  349 (377)
                      ++.-+++|+++|| .++.|++.+.|.+.|.---..  .+++.-+++++|..-+||++++
T Consensus       302 ~~~~i~~IvftGgfla~n~~~~~~L~~~l~~ws~g--~~~~~~~~~~~y~GAlGAaL~~  358 (360)
T 2i7n_A          302 LNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKG--QLKALFLEHEGYFGAVGALLEL  358 (360)
T ss_dssp             HHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTTT--SCCEEEETTTTCHHHHHHHHHH
T ss_pred             HHcCCCeEEEeCcccccCHHHHHHHHHHHhhhhcC--CeeEEEcCCccHHHHHHHHHHh
Confidence            3334568999999 999999999999988532111  2344556678999999998864

>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A

Probab=93.60  E-value=0.039  Score=49.84  Aligned_cols=25  Identities=28%  Similarity=0.541  Sum_probs=23.5

Q ss_pred             ceEEEEeCCCCceEEEEeeCceecc
Q 017125          150 TTGIVLDSGDGVSHTVPIYEGYALP  174 (377)
Q Consensus       150 ~~~lVVDiG~~~t~v~~v~~g~~~~  174 (377)
                      .++++||||+.+|+|+|+.+|+++.
T Consensus       127 ~~~llvDIGsTTTDIipi~~G~pl~  151 (334)
T 3cet_A          127 ENCILVDMGSTTTDIIPIVEGKVVA  151 (334)
T ss_dssp             SSEEEEEECSSCEEEEEEETTEECC
T ss_pred             CCEEEEEcCcchhhhhhhcCCeecc
Confidence            5799999999999999999999985

>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*

Probab=93.18  E-value=1.1  Score=40.71  Aligned_cols=91  Identities=14%  Similarity=0.172  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHhcccccccCCC--CCcEEEeeCCCCCHHhHHHHHhhhcccCC--CCeEEEechhhhhhhhcCCceEEEEe
Q 017125           81 WDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETFN--TPAMYVAIQAVLSLYASGRTTGIVLD  156 (377)
Q Consensus        81 ~~~~~~~~~~~~~~~L~~~~~--~~~vvl~~~~~~~~~~~~~l~~~lfe~~~--~~~v~~~~~~~~a~~~~g~~~~lVVD  156 (377)
                      ++.+.+.++.++ +..+..+.  -..+-+..|-.........+.+.+-+.++  ...|.+.++.-+++++....++++|-
T Consensus        49 ~~~i~~~i~~~~-~~~~~~~~~~i~gigi~~pG~vd~~~~~~l~~~l~~~~~~~~~pv~v~NDa~aaa~a~~~~~~v~v~  127 (347)
T 2ch5_A           49 VERINEMVNRAK-RKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLI  127 (347)
T ss_dssp             HHHHHHHHHHHH-HHHTCCTTCCBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHHHCSSCEEEEE
T ss_pred             HHHHHHHHHHHH-HhcCCCcccceeEEEEeccCCCchHHHHHHHHHHHHhcCCCCceEEEECcHHHHHHhhCCCCcEEEE
Confidence            345555555554 22233222  24577778877665544455555555565  13478889988888875335778888


Q ss_pred             CCCCceEEEEeeCcee
Q 017125          157 SGDGVSHTVPIYEGYA  172 (377)
Q Consensus       157 iG~~~t~v~~v~~g~~  172 (377)
                      +|.+.-......+|..
T Consensus       128 ~GTGig~~~v~~~G~~  143 (347)
T 2ch5_A          128 SGTGSNCRLINPDGSE  143 (347)
T ss_dssp             ESSSEEEEEECTTSCE
T ss_pred             EcCCceeEEEcCCCCE
Confidence            8876544332236644

>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10

Probab=93.16  E-value=0.21  Score=45.26  Aligned_cols=46  Identities=11%  Similarity=0.034  Sum_probs=34.7

Q ss_pred             ccCCCCeEEEechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCceecc
Q 017125          127 ETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP  174 (377)
Q Consensus       127 e~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~  174 (377)
                      +.+++| |.+.++.-+++++.       +..+.++|-+|.+ .-...|.+|++..
T Consensus       118 ~~~~~p-v~v~NDa~aaalgE~~~g~~~~~~~~v~l~~GtG-iG~giv~~G~l~~  170 (327)
T 2ap1_A          118 ARLDRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLVLNGKPIT  170 (327)
T ss_dssp             HHHTSC-EEEEEHHHHHHHHHHTSTTGGGCSEEEEEEESSS-EEEEEEETTEEEC
T ss_pred             HHHCCC-EEEecHHHHHHHHHHHhCcCCCCCcEEEEEECCc-EEEEEEECCEEee
Confidence            456777 88999998888752       3468899999876 6677788988764

>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}

Probab=93.09  E-value=0.61  Score=40.97  Aligned_cols=18  Identities=22%  Similarity=0.281  Sum_probs=16.2

Q ss_pred             CEEEeCCCCceEEeeeCC
Q 017125            9 PLVCDNGTGMVKAGFAGD   26 (377)
Q Consensus         9 ~viiD~Gs~~~k~G~~~~   26 (377)
                      .++||+|.+++|+|+..+
T Consensus         4 lL~IDIGNT~iK~gl~d~   21 (266)
T 3djc_A            4 ILCIDVGNSHIYGGVFDG   21 (266)
T ss_dssp             EEEEEECSSEEEEEEEET
T ss_pred             EEEEEECCCeEEEEEEEC
Confidence            689999999999998855

>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A

Probab=93.03  E-value=0.33  Score=44.30  Aligned_cols=46  Identities=20%  Similarity=0.206  Sum_probs=34.3

Q ss_pred             ccCCCCeEEEechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCceecc
Q 017125          127 ETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP  174 (377)
Q Consensus       127 e~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~  174 (377)
                      +.+++| |.+.++.-+++++.       +..+.++|-+|.+ .-...+.+|++..
T Consensus       129 ~~~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~v~i~~GtG-iG~gii~~G~l~~  181 (343)
T 2yhw_A          129 DTLHLP-VWVDNDGNCAALAERKFGQGKGLENFVTLITGTG-IGGGIIHQHELIH  181 (343)
T ss_dssp             HHHCSC-EEEEEHHHHHHHHHHHTSTTTTCSCEEEEEESSS-EEEEEEETTEECC
T ss_pred             HHHCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCC-EEEEEEECCEEec
Confidence            445777 78888888887753       3568899999976 6677788988764

>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}

Probab=91.63  E-value=0.86  Score=40.05  Aligned_cols=18  Identities=22%  Similarity=0.207  Sum_probs=15.5

Q ss_pred             CEEEeCCCCceEEeeeCC
Q 017125            9 PLVCDNGTGMVKAGFAGD   26 (377)
Q Consensus         9 ~viiD~Gs~~~k~G~~~~   26 (377)
                      -++||+|.+++|+|+..+
T Consensus         2 lL~IDIGNT~ik~gl~~~   19 (268)
T 2h3g_X            2 IFVLDVGNTNAVLGVFEE   19 (268)
T ss_dssp             EEEEEECSSEEEEEEEET
T ss_pred             EEEEEECcCcEEEEEEEC
Confidence            378999999999998854

>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A*

Probab=89.73  E-value=1.2  Score=42.16  Aligned_cols=89  Identities=12%  Similarity=0.107  Sum_probs=47.1

Q ss_pred             HHHHHHHHHhccccccc-CCCCCcEEEeeCCCCC------HHhHHHHHhhhcccC---CC--CeEEEech---h----hh
Q 017125           82 DDMEKIWHHTFYNELRV-APEEHPVLLTEAPLNP------KANREKMTQIMFETF---NT--PAMYVAIQ---A----VL  142 (377)
Q Consensus        82 ~~~~~~~~~~~~~~L~~-~~~~~~vvl~~~~~~~------~~~~~~l~~~lfe~~---~~--~~v~~~~~---~----~~  142 (377)
                      +.++.+++++- +.... ..+..||.+.-..-+.      ...++.+++.+-+.+   ++  ..+.++..   .    ++
T Consensus        89 ~~l~~Ll~~a~-~~vp~~~~~~tpi~~~ATAgmR~l~~~~~~~~~~il~~v~~~l~~~~f~~~~v~iisG~eEg~y~wi~  167 (452)
T 3zx3_A           89 AYLAECMKMST-ERIPASKQHQTPVYLGATAGMRLLRMESKQSADEVLAAVSRSLKSYPFDFQGAKIITGQEEGAYGWIT  167 (452)
T ss_dssp             HHHHHHHHHHH-HHSCHHHHTTCEEEEEECHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSEEEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HhCCHHHcCCccEEEEeeHHHhhccccCHHHHHHHHHHHHHHHhhCCCCCCceEECCchhhhhhhHHH
Confidence            34555555553 22211 1245677766443321      113344554444433   33  45666653   2    33


Q ss_pred             hhhhcCC------ceEEEEeCCCCceEEEEeeCce
Q 017125          143 SLYASGR------TTGIVLDSGDGVSHTVPIYEGY  171 (377)
Q Consensus       143 a~~~~g~------~~~lVVDiG~~~t~v~~v~~g~  171 (377)
                      +.|..|.      .+..++|+|+++|.|+-..++.
T Consensus       168 vnyllg~l~~~~~~t~g~lDlGGgStQi~f~~~~~  202 (452)
T 3zx3_A          168 INYLLGRFKTPGGSTFGALDLGGASTQITFVPLNS  202 (452)
T ss_dssp             HHHHTTTTC---CCCCEEEEECSSEEEEEECCSSC
T ss_pred             HHhhhccccCCCCCceEEEecCCCceEEEeccCCC
Confidence            3344452      5677899999999999666553

>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A

Probab=89.21  E-value=2.2  Score=36.90  Aligned_cols=24  Identities=21%  Similarity=0.356  Sum_probs=18.3

Q ss_pred             CceEEEEeCCCCceEEEEeeCceec
Q 017125          149 RTTGIVLDSGDGVSHTVPIYEGYAL  173 (377)
Q Consensus       149 ~~~~lVVDiG~~~t~v~~v~~g~~~  173 (377)
                      ...++|||+|...|--+. .+|.-+
T Consensus       121 ~~~~iVvD~GTA~T~d~v-~~g~~l  144 (249)
T 3bex_A          121 GKNGIIIDMGTATTVDLV-VNGSYE  144 (249)
T ss_dssp             CSCEEEEEESSEEEEEEE-ETTEEE
T ss_pred             CCCEEEEEcCCceEEEEE-eCCeEe
Confidence            368999999988765555 887655

>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5

Probab=85.58  E-value=5  Score=35.37  Aligned_cols=69  Identities=16%  Similarity=0.073  Sum_probs=46.7

Q ss_pred             cEEEeeCCCCCHHhHHHHHhhhcccCCC-CeEEEechhhhhhhh-cCCceEEEEeCCCCceEEEEeeCceec
Q 017125          104 PVLLTEAPLNPKANREKMTQIMFETFNT-PAMYVAIQAVLSLYA-SGRTTGIVLDSGDGVSHTVPIYEGYAL  173 (377)
Q Consensus       104 ~vvl~~~~~~~~~~~~~l~~~lfe~~~~-~~v~~~~~~~~a~~~-~g~~~~lVVDiG~~~t~v~~v~~g~~~  173 (377)
                      .+-+..|-.. ......+.+.+-+.+++ ..+.+.++.-+++++ .+..+++++=+|.+..-...+.||+..
T Consensus        62 ~igig~pG~~-~~~~~~l~~~l~~~~~~~~pv~v~NDa~~aa~ge~g~~~~v~v~~GTGigg~~i~~~G~~~  132 (291)
T 1zbs_A           62 AVYFYGAGCT-PAKAPMLNEALDSMLPHCDRIEVAGDMLGAARALCGDSEGIACILGTGSNSCLFDGREIKA  132 (291)
T ss_dssp             EEEEEETTCC-TTTHHHHHHHHHHHSTTCSEEEEECHHHHHHHHHTTTSCEEEEEESSSEEEEEECSSSEEE
T ss_pred             EEEEECCCCC-hHHHHHHHHHHHHhcCCCCcEEEeCcHHHHHHhhcCCCCcEEEEecCChheEEECCCCcEE
Confidence            4666677654 22223455555455665 368999999999987 567788888888776555556789875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	377
d2fxua2	225	c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI	1e-117
d1k8ka2	258	c.55.1.1 (A:161-418) Actin-related protein 3, Arp3	1e-107
d1k8kb1	190	c.55.1.1 (B:154-343) Actin-related protein 2, Arp2	1e-80
d2fxua1	140	c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId:	3e-75
d1k8ka1	158	c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {	9e-72

>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  336 bits (863), Expect = e-117
 Identities = 193/225 (85%), Positives = 209/225 (92%)

Query: 149 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAER 208
           RTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD LMKILTERGYSF TTAER
Sbjct: 1   RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAER 60

Query: 209 EIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSM 268
           EIVRD+KEKL Y+ALD+E E+ TA  SS++EKSYELPDGQVITIG ERFRCPE LFQPS 
Sbjct: 61  EIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSF 120

Query: 269 IGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMK 328
           IGMESAGIHETTYNSIMKCD+DIRKDLY N V+SGG+TM+PGIADRM KEITALAPS+MK
Sbjct: 121 IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMK 180

Query: 329 IKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVH 373
           IK++APPERKYSVWIGGSILASLSTFQQMWI K EYDE+GPSIVH
Sbjct: 181 IKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH 225

>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  313 bits (803), Expect = e-107
 Identities = 83/251 (33%), Positives = 122/251 (48%), Gaps = 24/251 (9%)

Query: 151 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREI 210
           TG V+DSGDGV+H +P+ EGY +   I  + +AGRD+T  + ++L +R          E 
Sbjct: 4   TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLET 63

Query: 211 VRDMKEKLAYIALDYEQELETAKI-SSAVEKSYEL-----PDGQVITIGAERFRCPEVLF 264
            + +KE+ +Y+  D  +E        S   K Y            I +G ERF  PE+ F
Sbjct: 64  AKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFF 123

Query: 265 QPSMIGMESA-GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIT--- 320
            P     +    I E     I  C +D+R+ LY NIVLSGGSTMF     R+ +++    
Sbjct: 124 HPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTV 183

Query: 321 -------------ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDES 367
                         L P  + ++V+    ++Y+VW GGS+LAS   F Q+   K +Y+E 
Sbjct: 184 DARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEI 243

Query: 368 GPSIV-HRKCF 377
           GPSI  H   F
Sbjct: 244 GPSICRHNPVF 254

>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 2, Arp2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  243 bits (620), Expect = 1e-80
 Identities = 85/177 (48%), Positives = 123/177 (69%)

Query: 152 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIV 211
           G+V+DSGDGV+H  P+YEG++LPH   RLD+AGRD+T  L+K+L  RGY+F  +A+ E V
Sbjct: 1   GVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETV 60

Query: 212 RDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGM 271
           R +KEKL Y+  + EQE + A  ++ + +SY LPDG++I +G ERF  PE LFQP +I +
Sbjct: 61  RMIKEKLCYVGYNIEQEQKLALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLINV 120

Query: 272 ESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMK 328
           E  G+ E  +N+I   D+D R + Y +IVLSGGSTM+PG+  R+ +E+  L    + 
Sbjct: 121 EGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVL 177

>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  227 bits (579), Expect = 3e-75
 Identities = 131/139 (94%), Positives = 135/139 (97%)

Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTL
Sbjct: 2   LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 61

Query: 70  KYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           KYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETF
Sbjct: 62  KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 121

Query: 130 NTPAMYVAIQAVLSLYASG 148
           N PAMYVAIQAVLSLYASG
Sbjct: 122 NVPAMYVAIQAVLSLYASG 140

>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  219 bits (558), Expect = 9e-72
 Identities = 63/153 (41%), Positives = 84/153 (54%), Gaps = 9/153 (5%)

Query: 9   PLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--------RPRHTGVMVGMGQKDAYVGDEA 60
             V D GTG  K G+AG+  P+ + PS +               VM G+   D ++GDEA
Sbjct: 5   ACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEA 64

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
             K      K+PI HGIV +WD ME+      +  LR  PE+H  LLTE PLN   NRE 
Sbjct: 65  IEKPTY-ATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREY 123

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGI 153
             +IMFE+FN P +Y+A+QAVL+L AS  +  +
Sbjct: 124 TAEIMFESFNVPGLYIAVQAVLALAASWTSRQV 156

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	377
d2fxua2	225	Actin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1k8ka2	258	Actin-related protein 3, Arp3 {Cow (Bos taurus) [T	100.0
d1k8kb1	190	Actin-related protein 2, Arp2 {Cow (Bos taurus) [T	100.0
d1k8ka1	158	Actin-related protein 3, Arp3 {Cow (Bos taurus) [T	99.97
d2fxua1	140	Actin {Cow (Bos taurus) [TaxId: 9913]}	99.97
d1e4ft2	191	Cell division protein FtsA {Thermotoga maritima [T	99.47
d1jcea2	196	Prokaryotic actin homolog MreB {Thermotoga maritim	99.33
d1dkgd2	198	Heat shock protein 70kDa, ATPase fragment {Escheri	99.16
d1bupa2	193	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	99.06
d1jcea1	137	Prokaryotic actin homolog MreB {Thermotoga maritim	98.83
d2zgya2	163	Plasmid segregation protein ParM {Escherichia coli	98.75
d2fsja1	161	Hypothetical protein Ta0583 {Archaeon Thermoplasma	98.53
d1dkgd1	183	Heat shock protein 70kDa, ATPase fragment {Escheri	98.44
d1bupa1	185	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	98.32
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	96.65
d2fsja2	164	Hypothetical protein Ta0583 {Archaeon Thermoplasma	94.47
d2i7na2	212	Pantothenate kinase 1, PANK1 {Human (Homo sapiens)	93.51
d1t6ca2	180	Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6	93.32
d1u6za3	177	Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5	93.05
d2zgya1	157	Plasmid segregation protein ParM {Escherichia coli	90.67
d1zc6a1	114	Probable N-acetylglucosamine kinase CV2896 {Chromo	88.28
d1q18a1	110	Glucokinase Glk {Escherichia coli [TaxId: 562]}	84.76
d2d0oa3	203	Diol dehydratase-reactivating factor large subunit	84.66
d1nbwa3	202	ATPase domain of the glycerol dehydratase reactiva	81.89
d2aa4a2	170	N-acetylmannosamine kinase NanK {Escherichia coli	80.5
d2hoea2	169	N-acetylglucosamine kinase {Thermotoga maritima [T	80.44
d2ewsa1	267	Type II pantothenate kinase, CoaW {Staphylococcus	80.1

>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.5e-53  Score=371.00  Aligned_cols=225  Identities=86%  Similarity=1.339  Sum_probs=216.8

Q ss_pred             CceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHH
Q 017125          149 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQE  228 (377)
Q Consensus       149 ~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~  228 (377)
                      ++||||||+|++.|+|+||+||+++.++.+++++||++++++|.++|.+++..+....+.+.++++|+.+|+++.+...+
T Consensus         1 rtTglVVDiG~~~t~v~PV~eG~~l~~~~~~~~~GG~~lt~~l~~~L~~~~~~~~~~~~~~~~~~~ke~~~~~~~d~~~e   80 (225)
T d2fxua2           1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENE   80 (225)
T ss_dssp             CSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHH
T ss_pred             CCEEEEEEcCCCcEEEEEEECCEEchhceEEEECcHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHhhcccchhHH
Confidence            57999999999999999999999999999999999999999999999999999888888899999999999999999888


Q ss_pred             HHHhccCCCcceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCC
Q 017125          229 LETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMF  308 (377)
Q Consensus       229 ~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i  308 (377)
                      .............|.+|||+.+.++.+|+.++|+||+|...+.+..+|+++|.++|.+||.|.|+.|++||+||||+|++
T Consensus        81 ~~~~~~~~~~~~~~~lpdg~~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~~nIvl~GG~s~~  160 (225)
T d2fxua2          81 MATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMY  160 (225)
T ss_dssp             HHHHHHCSTTCEEEECTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCS
T ss_pred             HhhcccCcccceeEECCCCCEEEEchHhccccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhhcCEEEeCCcccC
Confidence            88777777788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccc
Q 017125          309 PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVH  373 (377)
Q Consensus       309 ~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~  373 (377)
                      |||.+||++||..+.+...++++..+++|++++|+|||++|++++|+++||||+||+|+|++|||
T Consensus       161 ~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl~~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         161 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             TTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC
T ss_pred             CchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhcCccHhhEEEEHHHHHhhCccccC
Confidence            99999999999999999889999999999999999999999999999999999999999999986

>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.8e-50  Score=360.83  Aligned_cols=228  Identities=36%  Similarity=0.661  Sum_probs=205.0

Q ss_pred             ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHH
Q 017125          150 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEL  229 (377)
Q Consensus       150 ~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~  229 (377)
                      -||||||+|++.|+|+||+||+++.++.+++++||++++++|.++|.+++....+..+.+.++.+|+++|+++.++..+.
T Consensus         3 ~TGlVVDiG~~~T~v~PV~eG~~l~~~~~~~~~GG~~lt~~L~~~L~~~~~~~~~~~~~~~~~~~ke~~~~v~~d~~~e~   82 (258)
T d1k8ka2           3 LTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEF   82 (258)
T ss_dssp             CCEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHHHTTCCCCCGGGHHHHHHHHHHHHCCCCSCHHHHH
T ss_pred             CEEEEEEcCCCcEEEEEEECCEEchhheEEEeCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhHHhhhcccccchHHHH
Confidence            48999999999999999999999999999999999999999999999999998887788899999999999999998887


Q ss_pred             HHhccC-CCcceEEEcC-----CCcEEecCCccccccccCCCCccCCCC-CCChHHHHHHHHhcCChhHHHHhhcCceec
Q 017125          230 ETAKIS-SAVEKSYELP-----DGQVITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCDVDIRKDLYGNIVLS  302 (377)
Q Consensus       230 ~~~~~~-~~~~~~~~lp-----d~~~i~i~~~~~~~~E~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~  302 (377)
                      +..... ......+.++     ++..+.++.+|+.++|+||+|+..+.+ ..+|+++|.++|.+||+|.|+.|++||+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~si~~~~~d~r~~L~~nIvl~  162 (258)
T d1k8ka2          83 NKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLS  162 (258)
T ss_dssp             HHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEE
T ss_pred             HhhcccccccccccccccccCCCCeEEecCccceeccHHHhhhhhhcccccccchHHHHHHHHhccHHhhHHHHhCEEEe
Confidence            655432 2334455554     466889999999999999999988765 578999999999999999999999999999


Q ss_pred             cCCcCCcChHHHHHHHHHhhC----------------CCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhh
Q 017125          303 GGSTMFPGIADRMSKEITALA----------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDE  366 (377)
Q Consensus       303 GG~s~i~g~~~rl~~eL~~~~----------------~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e  366 (377)
                      ||+|++|||.+||++||.+.+                |...++++..+++|++++|+|||++|++++|+++||||+||+|
T Consensus       163 GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~Ggsila~l~~f~~~~Itk~eY~E  242 (258)
T d1k8ka2         163 GGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEE  242 (258)
T ss_dssp             SGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTSHHHHHHSEEHHHHHH
T ss_pred             cCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCCCceehHHHHHHHcCccHHhheecHHHHhh
Confidence            999999999999999997653                3445688899999999999999999999999999999999999


Q ss_pred             cCCccc-ccccC
Q 017125          367 SGPSIV-HRKCF  377 (377)
Q Consensus       367 ~G~~~~-~~k~~  377 (377)
                      +|++|| +||||
T Consensus       243 ~G~~iv~~rk~f  254 (258)
T d1k8ka2         243 IGPSICRHNPVF  254 (258)
T ss_dssp             HCGGGGGCCCCC
T ss_pred             hChHHHhcCCCc
Confidence            999999 68898

>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 2, Arp2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.7e-37  Score=261.58  Aligned_cols=174  Identities=49%  Similarity=0.896  Sum_probs=165.7

Q ss_pred             EEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHH
Q 017125          152 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELET  231 (377)
Q Consensus       152 ~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~  231 (377)
                      |||||+|++.|+|+||+||+++.++..++++||+++++++.++|.+++..+....+...++++|+++|+++.++.++...
T Consensus         1 GlVVDiG~~~T~v~PV~dG~~l~~a~~~~~igG~~lt~~l~~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~e~~~   80 (190)
T d1k8kb1           1 GVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKL   80 (190)
T ss_dssp             CCEEEECSSCEEEECEETTEECSTTCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHHHH
T ss_pred             CEEEEcCCCcEEEEEeECCEEcccceEEEeccHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhhhhhhcccHHHHHHh
Confidence            68999999999999999999999999999999999999999999999988887778889999999999999999988877


Q ss_pred             hccCCCcceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcCh
Q 017125          232 AKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI  311 (377)
Q Consensus       232 ~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~  311 (377)
                      ..........|.+|||+.+.++.+||.++|.||+|+..+.+..+|+++|.++|.+||.|.|+.|++|||||||+|++|||
T Consensus        81 ~~~~~~~~~~~~lpdg~~i~i~~er~~~~E~lF~p~~~~~~~~~l~~~i~~si~~c~~d~r~~L~~NIvl~GG~Sl~pGf  160 (190)
T d1k8kb1          81 ALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGL  160 (190)
T ss_dssp             HHHCSTTCEEEECTTSCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTH
T ss_pred             hhcccceeeeeecCCCcEEEEChhhccccccccChhhcCcccccHHHHHHHHHHhCCHhHHHHHHcCEEEECcccCCCCH
Confidence            77767778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCC
Q 017125          312 ADRMSKEITALAPS  325 (377)
Q Consensus       312 ~~rl~~eL~~~~~~  325 (377)
                      .+||++||+++.|.
T Consensus       161 ~~RL~~EL~~l~p~  174 (190)
T d1k8kb1         161 PSRLERELKQLYLE  174 (190)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhH
Confidence            99999999998764

>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.8e-31  Score=219.42  Aligned_cols=145  Identities=43%  Similarity=0.743  Sum_probs=128.5

Q ss_pred             CCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCC--------ccccCCCccceeccchhcccCcceeeccccCCcc
Q 017125            7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG--------VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV   78 (377)
Q Consensus         7 ~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~--------~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i   78 (377)
                      .++||||+||+++|+||+|++.|++++||+++.++...        .+.+.+..+.++|+++.+.. ...+.+|+++|.+
T Consensus         3 ~PavViD~GS~~~KaG~age~~P~~i~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~ig~e~~~~~-~~~~~~pi~~G~i   81 (158)
T d1k8ka1           3 LPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKP-TYATKWPIRHGIV   81 (158)
T ss_dssp             SCCEEEEECSSEEEEEETTCSSCSEEEESCEEECC-----------CCCTTGGGCEEEGGGGTSCT-TSEEECCEETTEE
T ss_pred             CCcEEEECCCCeEEEEECCCCCCCEEeccceeecccccccCchhcccccCCCccceecChhhhhCC-CccccccccCCeE
Confidence            46799999999999999999999999999998775432        23334456788999987544 4678999999999


Q ss_pred             CCHHHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceE
Q 017125           79 NNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG  152 (377)
Q Consensus        79 ~d~~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~  152 (377)
                      .|||.++.+|+++|.+.|.++++++|++++||+++++..|++++|++||+|++|++++.+++++++||+|++++
T Consensus        82 ~dwd~~e~l~~~~~~~~l~v~~~~~pvlltEp~~~~~~~Re~~~EilFE~~~vpa~~~~~~~~Lslya~g~~~~  155 (158)
T d1k8ka1          82 EDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQ  155 (158)
T ss_dssp             SCHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTT
T ss_pred             ecHHHHHHHHHHHHHHhcccCCCCCceeeeecCCCCHHHHHHHHHHHhhhcCCCEEEEEchhhhhheeCCCCCC
Confidence            99999999999999899999999999999999999999999999999999999999999999999999998754

>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=5.2e-31  Score=212.79  Aligned_cols=140  Identities=94%  Similarity=1.484  Sum_probs=127.5

Q ss_pred             CEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHHHHHHH
Q 017125            9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIW   88 (377)
Q Consensus         9 ~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~~~~~   88 (377)
                      .||||+||++||+||+|++.|++++|+++++++......+....+.++|+++........+++|+++|.+.||+.++++|
T Consensus         1 avViD~Gs~~~k~G~age~~P~~~~ps~~g~~~~~~~~~~~~~~~~~igd~~~~~~~~~~~~~p~~~g~v~dwd~~e~~~   80 (140)
T d2fxua1           1 ALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIW   80 (140)
T ss_dssp             CEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHHHHTTSEEEECSEETTEECCHHHHHHHH
T ss_pred             CEEEECCCCeEEEeeCCCCCcceEeccceeeecccccccCccccceeeChhHhhccccccccCcCcCCcccCHHHHHHHH
Confidence            48999999999999999999999999999999888777666677788999988877778899999999999999999999


Q ss_pred             HHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcC
Q 017125           89 HHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG  148 (377)
Q Consensus        89 ~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g  148 (377)
                      +++|.+.|.++++++|++++||++++...|++++|++||.|++|++++.+++++++|++|
T Consensus        81 ~~~~~~~l~~~~~~~pvlltE~~~~~~~~r~~~~EilFE~~~vp~~~~~~~~~ls~ys~G  140 (140)
T d2fxua1          81 HHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG  140 (140)
T ss_dssp             HHHHHTTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTT
T ss_pred             HHhhhhhcccCCCCCcceeeccCCCCHHHHHHHHHHhhccCCCCEEEEEhhHHhHhhcCC
Confidence            999988999999999999999999999999999999999999999999999999999987

>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Cell division protein FtsA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.47  E-value=4.7e-14  Score=118.36  Aligned_cols=141  Identities=14%  Similarity=0.164  Sum_probs=86.5

Q ss_pred             eEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHH
Q 017125          151 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELE  230 (377)
Q Consensus       151 ~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~  230 (377)
                      ..+|||+|+++|+++.+.+|.++  ....+++||+++|+.+.+.+.         ...+.+|++|.+++.+..+..    
T Consensus         8 Gv~vvDiG~~tt~i~i~~~G~l~--~~~~i~~GG~~iT~~Ia~~l~---------i~~~~AE~iK~~~g~~~~~~~----   72 (191)
T d1e4ft2           8 GVVVVNLGYNFTGLIAYKNGVPI--KISYVPVGMKHVIKDVSAVLD---------TSFEESERLIITHGNAVYNDL----   72 (191)
T ss_dssp             CEEEEEECSSCEEEEEEETTEEE--EEEEESCCHHHHHHHHHHHHT---------CCHHHHHHHHHHHCCSCCTTC----
T ss_pred             CEEEEEeCCCcEEEEEEECCeEE--EEEEEeeChHHHHHHHHHHhc---------ccHHHHHHHHhhccccccccc----
Confidence            57999999999999999999998  667899999999999998872         235679999999887653311    


Q ss_pred             HhccCCCcceEEEcCCCc-EEecCCcc-ccccccCCCCccCCCCCCChHHHHHHHHhcC----ChhHHHHhhcCceeccC
Q 017125          231 TAKISSAVEKSYELPDGQ-VITIGAER-FRCPEVLFQPSMIGMESAGIHETTYNSIMKC----DVDIRKDLYGNIVLSGG  304 (377)
Q Consensus       231 ~~~~~~~~~~~~~lpd~~-~i~i~~~~-~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~----~~~~~~~l~~nIvl~GG  304 (377)
                           ......+.-.++. ...+.... ..+.+..+..         +.+.+.+.+..+    ..+....+..+|+||||
T Consensus        73 -----~~~~i~~~~~~~~~~~~~~~~~l~~ii~~~~~e---------i~~~i~~~~~~~~~~~~~~~~~~~~~~IvLtGG  138 (191)
T d1e4ft2          73 -----KEEEIQYRGLDGNTIKTTTAKKLSVIIHARLRE---------IMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGG  138 (191)
T ss_dssp             -----CCCEEEEECTTSSCEEEEEHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHC------CGGGCEEEESG
T ss_pred             -----cchhcccccccCCCcccccHHHHHHHHHHHHHH---------HHHHHHHHHHhhccchhhhcccccCceEEEecc
Confidence                 1111112111221 11111000 0000111111         223333333332    22333456678999999


Q ss_pred             CcCCcChHHHHHHHHH
Q 017125          305 STMFPGIADRMSKEIT  320 (377)
Q Consensus       305 ~s~i~g~~~rl~~eL~  320 (377)
                      +|++|||.+.+++.|.
T Consensus       139 gs~l~gl~~~l~~~l~  154 (191)
T d1e4ft2         139 GAKIPRINELATEVFK  154 (191)
T ss_dssp             GGGSTTHHHHHHHHHC
T ss_pred             hhhhhhHHHHHHHHHC
Confidence            9999999999999884

>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.33  E-value=1.8e-12  Score=108.78  Aligned_cols=173  Identities=17%  Similarity=0.265  Sum_probs=105.7

Q ss_pred             ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHc-CCCCcChhHHHHHHHHHHhcceeccCHHHH
Q 017125          150 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER-GYSFTTTAEREIVRDMKEKLAYIALDYEQE  228 (377)
Q Consensus       150 ~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~-~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~  228 (377)
                      .+.+|+|+|+++|+|+.+..|.+.  ....++.||.+++..+...+... .....    .......+.............
T Consensus         7 ~gvlV~DiGGGT~Dvsi~~~g~~~--~~~~~~~gg~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~   80 (196)
T d1jcea2           7 SGNMVVDIGGGTTEVAVISLGSIV--TWESIRIAGDEMDEAIVQYVRETYRVAIG----ERTAERVKIEIGNVFPSKEND   80 (196)
T ss_dssp             SCEEEEEECSSCEEEEEEETTEEE--EEEEESCSHHHHHHHHHHHHHHHHCEECC----HHHHHHHHHHHCBCSCCHHHH
T ss_pred             CceEEEEcCCCcEEEEEEEcCCEe--EEeeecCCCcccccchhhhhhhhhccccc----chhHHHHHHHHhhhhhhhhcc
Confidence            478999999999999999999877  55678999999999998877543 21111    122222233222221111111


Q ss_pred             HHHhccCCCcceEEEcCCCcEEec--C-CccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHH-HhhcCceeccC
Q 017125          229 LETAKISSAVEKSYELPDGQVITI--G-AERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRK-DLYGNIVLSGG  304 (377)
Q Consensus       229 ~~~~~~~~~~~~~~~lpd~~~i~i--~-~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~-~l~~nIvl~GG  304 (377)
                      .  ..   .........++.....  . .+.....+.++..         +.+.|.+++..+...... ...+.|+||||
T Consensus        81 ~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~~~l~~~~~~~~~~~~~~~IvLvGG  146 (196)
T d1jcea2          81 E--LE---TTVSGIDLSTGLPRKLTLKGGEVREALRSVVVA---------IVESVRTTLEKTPPELVSDIIERGIFLTGG  146 (196)
T ss_dssp             H--CE---EEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHH---------HHHHHHHHHHTSCHHHHHHHHHHCEEEESG
T ss_pred             c--cc---eeeeeeeccCCCccccccchhhHHHHHHHHHHH---------HHHHHHHHHHHhhccccccccccceEEeCc
Confidence            0  00   0011112222221111  1 1111233333333         667778888877766554 34578999999


Q ss_pred             CcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017125          305 STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       305 ~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      +|++|++++++++.+..      +  +....+|.+++..||+++++
T Consensus       147 sS~ip~v~~~l~~~fg~------~--v~~~~~P~~aVA~GAai~~~  184 (196)
T d1jcea2         147 GSLLRGLDTLLQKETGI------S--VIRSEEPLTAVAKGAGMVLD  184 (196)
T ss_dssp             GGCSBTHHHHHHHHHSS------C--EEECSSTTTHHHHHHHHGGG
T ss_pred             hhcchhHHHHHHHHHCc------C--CccCCChHHHHHHHHHHHHH
Confidence            99999999999988731      2  34456889999999999864

>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=99.16  E-value=1.1e-11  Score=104.26  Aligned_cols=169  Identities=20%  Similarity=0.245  Sum_probs=99.7

Q ss_pred             CCceEEEEeCCCCceEEEEee------Ccee-cccceEEecccHHHHHHHHHHHHHH-----cCCCCcChhH-----HHH
Q 017125          148 GRTTGIVLDSGDGVSHTVPIY------EGYA-LPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTTAE-----REI  210 (377)
Q Consensus       148 g~~~~lVVDiG~~~t~v~~v~------~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~~-----~~~  210 (377)
                      |..+.+|+|+|+++++++.+.      ++.. +........+||+++++.|.+++.+     .+.+......     ...
T Consensus         1 g~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~   80 (198)
T d1dkgd2           1 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEA   80 (198)
T ss_dssp             CEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHH
T ss_pred             CCeEEEEEEcCCCcEEEEEEEEEccCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHH
Confidence            345789999999999999775      1211 1122234578999999999988743     2333332111     123


Q ss_pred             HHHHHHhcceeccCHHHHHHHhccCCCcceEEEcC----C---Cc--EEecCCcccc-ccccCCCCccCCCCCCChHHHH
Q 017125          211 VRDMKEKLAYIALDYEQELETAKISSAVEKSYELP----D---GQ--VITIGAERFR-CPEVLFQPSMIGMESAGIHETT  280 (377)
Q Consensus       211 ~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp----d---~~--~i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I  280 (377)
                      +++.|+.++..                ....+.+|    +   +.  .+.+..+.|. ..+.++..         +.++|
T Consensus        81 ~e~~K~~Ls~~----------------~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~~~~~~~~~---------~~~~i  135 (198)
T d1dkgd2          81 AEKAKIELSSA----------------QQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNR---------SIELL  135 (198)
T ss_dssp             HHHHHHHTTSS----------------SEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHH---------HHHHH
T ss_pred             HHHHHHHhcCC----------------CeEEEEEeeeecCCCCCceEEEEEcHHHHHHHHHHHHHH---------HHHHH
Confidence            44555544311                11122221    1   11  2233333221 22222222         56666


Q ss_pred             HHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          281 YNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       281 ~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      .+++.+...+  ..-++.|+|+||+|++|.+.++|++.+..        ++....+|..++-.||+++|+.
T Consensus       136 ~~~l~~a~~~--~~~Id~v~lvGG~sr~p~l~~~i~~~f~~--------~~~~~~~p~~aVa~GAa~~aa~  196 (198)
T d1dkgd2         136 KVALQDAGLS--VSDIDDVILVGGQTRMPMVQKKVAEFFGK--------EPRKDVNPDEAVAIGAAVQGGV  196 (198)
T ss_dssp             HHHHHTTTCC--TTTCCEEEEESGGGGSHHHHHHHHHHHSS--------CCBCSSCTTTHHHHHHHHHTTT
T ss_pred             HHHHHHhCCC--hhHCcEEEEEcCccCCHHHHHHHHHHHCC--------CCCCCCChHHHHHHHHHHHHHh
Confidence            6777655433  22367899999999999999999988742        2334557889999999999875

>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.06  E-value=4.5e-11  Score=100.00  Aligned_cols=172  Identities=18%  Similarity=0.246  Sum_probs=92.9

Q ss_pred             CceEEEEeCCCCceEEEEee--Ccee-cccceEEecccHHHHHHHHHHHHHH-----cCCCCcChhH-----HHHHHHHH
Q 017125          149 RTTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTTAE-----REIVRDMK  215 (377)
Q Consensus       149 ~~~~lVVDiG~~~t~v~~v~--~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~~-----~~~~~~ik  215 (377)
                      ..+.+|+|+|+++++++.+-  ++.. +..+.....+||.++++.+.+++.+     .+.+......     ...++..|
T Consensus         4 e~~VlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K   83 (193)
T d1bupa2           4 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAK   83 (193)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEEeCCCeEEEEEEEEeCCEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHh
Confidence            35789999999999988653  3321 1222334579999999998887743     2333322111     12233444


Q ss_pred             HhcceeccCHHHHHHHhccCCCcceEEEc---CCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHH
Q 017125          216 EKLAYIALDYEQELETAKISSAVEKSYEL---PDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIR  292 (377)
Q Consensus       216 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~l---pd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~  292 (377)
                      +.++.                .....+.+   .++....+.-.|..+ |-++.|-     ...+.+.|.+++.+..  ..
T Consensus        84 ~~ls~----------------~~~~~~~~~~~~~~~~~~~~itr~~~-e~~~~~~-----~~~~~~~i~~~l~~~~--~~  139 (193)
T d1bupa2          84 RTLSS----------------STQASIEIDSLYEGIDFYTSITRARF-EELNADL-----FRGTLDPVEKALRDAK--LD  139 (193)
T ss_dssp             HHHTT----------------SSEEEEEEEEEETTEEEEEEEEHHHH-HHHTHHH-----HHHTHHHHHHHHHHHT--CC
T ss_pred             hccCC----------------CceEEEEEecccCCCccceEEcHHHH-HHHHHHH-----HHHHHHHHHHHHHHcC--CC
Confidence            43331                11122222   223222221122222 1233330     0113334444443321  11


Q ss_pred             HHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          293 KDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       293 ~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      ..-++.|+++||+|++|.+.+.+++.+...       ++..+.+|+.++-.||+++|+.
T Consensus       140 ~~~i~~V~lvGG~sr~p~v~~~i~~~f~~~-------~i~~~~~p~~aVa~GaA~~aa~  191 (193)
T d1bupa2         140 KSQIHDIVLVGGSTRIPKIQKLLQDFFNGK-------ELNKSINPDEAVAYGAAVQAAI  191 (193)
T ss_dssp             GGGCCEEEEESGGGGCHHHHHHHHHHTTTC-------CCBCSSCGGGHHHHHHHHHHHH
T ss_pred             HHHCCEEEEECCccccHHHHHHHHHHcCCC-------CCCCCCChHHHHHHHHHHHHHh
Confidence            223578999999999998877777555321       2444568899999999999864

>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.83  E-value=1.2e-08  Score=79.84  Aligned_cols=131  Identities=12%  Similarity=0.075  Sum_probs=93.2

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhccc----CcceeeccccCCccCCHHH
Q 017125            8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVNNWDD   83 (377)
Q Consensus         8 ~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~   83 (377)
                      +.|.||+||+++.+.+.++.. ....|+..+.....       .....+|+++....    ......+++.++...+.+.
T Consensus         1 ~~iGIDlGTtns~va~~~~~~-v~~~~~~~~~~~~~-------~~~~~~g~~a~~~~~~~~~~~~~~k~~~~~~~~~~~~   72 (137)
T d1jcea1           1 KDIGIDLGTANTLVFLRGKGI-VVNEPSVIAIDSTT-------GEILKVGLEAKNMIGKTPATIKAIRPMRDGVIADYTV   72 (137)
T ss_dssp             CEEEEEECSSEEEEEETTTEE-EEEEESCEEEETTT-------CCEEEESHHHHTTTTCCCTTEEEECCEETTEESSHHH
T ss_pred             CeEEEEcChhhEEEEEeCCCE-EeecCCcceEecCC-------CeEEEEehHHhhhhhhccccceeEEeccCCccCcHHH
Confidence            468999999999998765431 12234444332221       22344566554431    2245677888898999988


Q ss_pred             HHHHHHHhccccccc-CCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhc
Q 017125           84 MEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS  147 (377)
Q Consensus        84 ~~~~~~~~~~~~L~~-~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~  147 (377)
                      .+.++.++....... ......+++++|..+...+|+.+.+.+ +.+|++.+.++++|+||+++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa-~~AGl~vv~li~EPtAAAiGa  136 (137)
T d1jcea1          73 ALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAG-LEAGASKVFLIEEPMAAAIGS  136 (137)
T ss_dssp             HHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHH-HHTTCSEEEEEEHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHHH-HHcCCCEEEEeCCHHHHHhCC
Confidence            888888876433222 234577999999999999999988877 889999999999999999875

>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Plasmid segregation protein ParM
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=2e-09  Score=87.06  Aligned_cols=49  Identities=12%  Similarity=0.030  Sum_probs=39.4

Q ss_pred             ceEEEEeCCCCceEEEEeeCceeccc-ceEEecccHHHHHHHHHHHHHHc
Q 017125          150 TTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDALMKILTER  198 (377)
Q Consensus       150 ~~~lVVDiG~~~t~v~~v~~g~~~~~-~~~~~~~GG~~i~~~l~~~l~~~  198 (377)
                      .+.+|+|+|+++|+++.+.++..... +....+.||.++++.+.+.+...
T Consensus         7 ~~ilViDiGggTtDi~v~~~~~~~~~~~~~~~~~G~~~i~~~i~~~l~~~   56 (163)
T d2zgya2           7 DSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLA   56 (163)
T ss_dssp             CEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCCCcEEEEEEcCCeEEEEEeeccccccchHHHHHHHHhhHHh
Confidence            57899999999999998877755433 34567999999999999888543

>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ta0583-like
domain: Hypothetical protein Ta0583
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.53  E-value=5.3e-08  Score=78.28  Aligned_cols=49  Identities=18%  Similarity=0.257  Sum_probs=39.3

Q ss_pred             ceEEEEeCCCCceEEEEeeCc--eecccceEEecccHHHHHHHHHHHHHHc
Q 017125          150 TTGIVLDSGDGVSHTVPIYEG--YALPHAILRLDLAGRDLTDALMKILTER  198 (377)
Q Consensus       150 ~~~lVVDiG~~~t~v~~v~~g--~~~~~~~~~~~~GG~~i~~~l~~~l~~~  198 (377)
                      .+.+|||+|+++|+++.+.++  .+........+.|+.++.+.+.+.+..+
T Consensus         6 g~~lviDIG~gTtDi~v~~~~~~~~~~~~~~~~~~g~~~i~~~i~~~i~~~   56 (161)
T d2fsja1           6 GYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGDAISALSRKIAKE   56 (161)
T ss_dssp             SEEEEEEECSSCEEEEEEETTTTEECGGGCEEESCCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCcCeEEEEEEECCCeEEEEEEeccHhHHHHHHHHHHHHHHHHH
Confidence            468999999999999998765  4554445678999999999998887644

>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=98.44  E-value=7e-08  Score=79.33  Aligned_cols=66  Identities=9%  Similarity=-0.013  Sum_probs=50.8

Q ss_pred             HHHHHHHHHhc---ccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCc
Q 017125           82 DDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT  150 (377)
Q Consensus        82 ~~~~~~~~~~~---~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~  150 (377)
                      +....+++++.   .+.++.  .-..++|++|..++..+|+.+.+.+ +..|++.+.++++|.||++++|..
T Consensus       112 ~l~a~~L~~l~~~a~~~~~~--~~~~~VitVPa~f~~~~r~~l~~Aa-~~AG~~~~~li~EP~AAAl~Ygl~  180 (183)
T d1dkgd1         112 QISAEVLKKMKKTAEDYLGE--PVTEAVITVPAYFNDAQRQATKDAG-RIAGLEVKRIINEPTAAALAYGLD  180 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHHSS--CCCEEEECBCTTCCHHHHHHHHHHH-HHTTCEESCCCBHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHHHH-HHcCCCEEEEecCHHHHHHHhccc
Confidence            34455555543   123333  3457999999999999999988877 789999999999999999999853

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.32  E-value=4.2e-07  Score=74.66  Aligned_cols=65  Identities=8%  Similarity=-0.020  Sum_probs=50.4

Q ss_pred             HHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC
Q 017125           82 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR  149 (377)
Q Consensus        82 ~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~  149 (377)
                      +....+++++..   +.++  ..-..+++++|+.++..+|+.+.+.+ +.+|++.+.++++|.||++++|.
T Consensus       115 el~a~~l~~l~~~a~~~~~--~~~~~~VitvPa~f~~~qr~~~~~Aa-~~AGl~~~~li~EP~AAAl~Ygl  182 (185)
T d1bupa1         115 EVSSMVLTKMKEIAEAYLG--KTVTNAVVTVPAYFNDSQRQATKDAG-TIAGLNVLRIINEPTAAAIAYGL  182 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHT--SCCCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHhC--CCcCcEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEEcCHHHHHHHhcc
Confidence            344555555531   2333  23456999999999999999888877 88999999999999999999985

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.65  E-value=0.0081  Score=50.23  Aligned_cols=47  Identities=17%  Similarity=0.410  Sum_probs=37.9

Q ss_pred             cCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125          297 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       297 ~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      +.||+.||.++.++|.++|++.|.        .++..++.+..+.-+||+++|.-
T Consensus       209 ~~Iv~gGGv~~~~~~~~~l~~~l~--------~~i~~~~~~~~agaiGAA~lA~~  255 (259)
T d1huxa_         209 KDVVMTGGVAQNYGVRGALEEGLG--------VEIKTSPLAQYNGALGAALYAYK  255 (259)
T ss_dssp             SSEEEESGGGGCHHHHHHHHHHHC--------SCEECCGGGGGHHHHHHHHHHHH
T ss_pred             CcEEEEccccccHHHHHHHHHHHC--------CCEEcCCCccHHHHHHHHHHHHH
Confidence            469999999999999999988872        35667777778878999998864

>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ta0583-like
domain: Hypothetical protein Ta0583
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.47  E-value=0.016  Score=45.25  Aligned_cols=131  Identities=15%  Similarity=0.080  Sum_probs=68.6

Q ss_pred             CEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCc---------cccCCCccceeccchhcccCcceeeccccCCccC
Q 017125            9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV---------MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVN   79 (377)
Q Consensus         9 ~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~---------~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~   79 (377)
                      .+.||+|-.++|+- .++ .-.+.+||.++.......         ....++..++||+.|....    ..+++......
T Consensus         3 iigiD~G~g~tK~~-~~~-~~~~~fPS~v~~~~~~~~~~~~~~~~~~~~~~~~~y~vG~~A~~~~----~~~~~~~dk~~   76 (164)
T d2fsja2           3 VVGLDVGYGDTKVI-GVD-GKRIIFPSRWAVTETESWGIGGKIPVLSTDGGQTKFIYGKYASGNN----IRVPQGDGRLA   76 (164)
T ss_dssp             EEEEEECSSEEEEE-CGG-GCEEEEESCEEEECCSCC----CCCCBBSSTTSSEEEEGGGCCSSC----CBCCSSTTCTT
T ss_pred             EEEEEcCCcceEEE-ecC-CCEEEEeeeceeccccccccCCCceeEEEEeCCeEEEEccchhhcc----ccccccccccc
Confidence            78899999999974 333 223568998876543321         1122455678887663322    12344444443


Q ss_pred             CHHHHHHHHHHhcccccccC-CCCCc--EEEeeCCCCCHHhHHHHHhhhcc-------------cCCCCeEEEechhhhh
Q 017125           80 NWDDMEKIWHHTFYNELRVA-PEEHP--VLLTEAPLNPKANREKMTQIMFE-------------TFNTPAMYVAIQAVLS  143 (377)
Q Consensus        80 d~~~~~~~~~~~~~~~L~~~-~~~~~--vvl~~~~~~~~~~~~~l~~~lfe-------------~~~~~~v~~~~~~~~a  143 (377)
                      +.+. +.++..++....... .+...  +++-.|...-..+++++.+.+..             .+.+..+.+.|++..|
T Consensus        77 ~~~~-~~l~l~al~~~~~~~~~~~~~v~lv~GLP~~~~~~~ke~~~~~l~~~~~~~~~~~g~~~~i~I~~v~V~pQg~ga  155 (164)
T d2fsja2          77 SKEA-FPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGA  155 (164)
T ss_dssp             STTT-HHHHHHHHHHHCCCC---CEEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHH
T ss_pred             CHHH-HHHHHHHHHHHhhhcCCCceeEEEEecCCHHHHHHHHHHHHHHhcCCCceEEeeCCeEEEEEEeEEEEecCCHHH
Confidence            3222 222223321211111 12223  44556766556677878777642             2334566777777776


Q ss_pred             hhh
Q 017125          144 LYA  146 (377)
Q Consensus       144 ~~~  146 (377)
                      .+.
T Consensus       156 ~~~  158 (164)
T d2fsja2         156 ALY  158 (164)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Pantothenate kinase 1, PANK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.091  Score=42.58  Aligned_cols=72  Identities=11%  Similarity=0.044  Sum_probs=47.7

Q ss_pred             ChHHHHHHHHhcC-ChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhh
Q 017125          275 GIHETTYNSIMKC-DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSI  347 (377)
Q Consensus       275 ~l~~~I~~~i~~~-~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi  347 (377)
                      ++.++|.+.|... -...+..=+++|+++||.+.-..+++++.+.....+.. ..++++-+.+..|+.-+||.|
T Consensus       136 S~q~~v~~~l~~~a~~aa~~~~~k~iv~~Ggv~aN~~lr~~l~~~~~~~~~~-~~i~~~Fp~~~~y~galGA~l  208 (212)
T d2i7na2         136 ATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSK-GQLKALFLEHEGYFGAVGALL  208 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTT-TSCCEEEETTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHhhCHHHHHHHHHHHHHHHhh-CCceEEecCChhhhHHHHHHH
Confidence            4555555555433 22334455689999999999999999998776554432 145555566677888888765

>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.32  E-value=0.05  Score=42.94  Aligned_cols=40  Identities=20%  Similarity=0.174  Sum_probs=34.7

Q ss_pred             ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHH
Q 017125          150 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL  191 (377)
Q Consensus       150 ~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l  191 (377)
                      .+++|+|+|+++|.++-+-++.+.  .....++|.-.+++.+
T Consensus         3 ~~~lviDIGGGStEli~~~~~~i~--~~~Sl~lG~vrl~e~f   42 (180)
T d1t6ca2           3 GEVCVVDQGGGSTEYVFGKGYKVR--EVISLPIGIVNLTETF   42 (180)
T ss_dssp             SEEEEEEEETTEEEEEEEETTEEE--EEEEECCCHHHHHHHH
T ss_pred             CCEEEEEeCCChHhhEEeeCCcee--eEEEeecceEEeeccc
Confidence            378999999999999999999888  6678999987777665

>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Escherichia coli [TaxId: 562]

Probab=93.05  E-value=0.071  Score=41.77  Aligned_cols=39  Identities=13%  Similarity=0.102  Sum_probs=33.4

Q ss_pred             eEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHH
Q 017125          151 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL  191 (377)
Q Consensus       151 ~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l  191 (377)
                      ..||+|+|+++|.++.+.++.+.  .....|+|.-.+++.+
T Consensus         3 r~Lv~DIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl~e~~   41 (177)
T d1u6za3           3 RKLVIDIGGGSTELVIGENFEPI--LVESRRMGCVSFAQLY   41 (177)
T ss_dssp             CEEEEEECSSCEEEEEEETTEEE--EEEEESCCHHHHHHHH
T ss_pred             CEEEEEeCCChhheEEEECCcEe--EEEEeccceEEeeccc
Confidence            58999999999999999999887  6678999987766655

>d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Plasmid segregation protein ParM
species: Escherichia coli [TaxId: 562]

Probab=90.67  E-value=0.12  Score=39.73  Aligned_cols=130  Identities=13%  Similarity=0.100  Sum_probs=62.0

Q ss_pred             CEEEeCCCCceEEeeeCCC--CCCCCCCceeeeeCCCC------ccccCCCccceeccchhcccCcceeeccccCCccCC
Q 017125            9 PLVCDNGTGMVKAGFAGDD--APRAVFPSIVGRPRHTG------VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNN   80 (377)
Q Consensus         9 ~viiD~Gs~~~k~G~~~~~--~P~~~~ps~~~~~~~~~------~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d   80 (377)
                      .|.||.|..++|+.+...+  .+....|+.........      .....++..+.+|+.+..........+       ..
T Consensus         2 ~I~iD~Gy~nvK~a~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~y~v~G~~Y~vG~~~~~~~~t~~~dy-------~~   74 (157)
T d2zgya1           2 LVFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPDAVVTTNIAW-------QY   74 (157)
T ss_dssp             EEEEEECSSEEEEEEECSSSCEEEEEEECCEESSCCCCSSSCCCCEEEETTEEEEECTTCBSCCCSCCSGG-------GG
T ss_pred             EEEEecCCCcEEEEEecCCCcEeEEEeccccccccccccCCCceEEEEECCEEEEEcCCcccccccccccc-------cc
Confidence            4789999999998765422  22233344322211110      000112334455544322111000000       01


Q ss_pred             HHHHHHHHHHhcccccccCCCCCcEEEeeCCC--C------CHHhHHHHHhhhcc--------cCCCCeEEEechhhhhh
Q 017125           81 WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL--N------PKANREKMTQIMFE--------TFNTPAMYVAIQAVLSL  144 (377)
Q Consensus        81 ~~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~--~------~~~~~~~l~~~lfe--------~~~~~~v~~~~~~~~a~  144 (377)
                      .+....++.+.+ ...+.++.+-.+++..|..  .      .+...+...+-++.        .+.+..|.+.|++++|.
T Consensus        75 ~~~~~ali~~aL-~~~~~~~~~v~~~~glp~~~f~~~~~~~~~~~i~~k~~~~~~~~~~~~~~~~~I~~V~V~Pq~~~A~  153 (157)
T d2zgya1          75 SDVNVVAVHHAL-LTSGLPVSEVDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAG  153 (157)
T ss_dssp             SHHHHHHHHHHH-HHHSCCSCEEEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEESSHHHH
T ss_pred             cHHHHHHHHHHH-HHcCCCCCcEEEEecCCHHHHhhhhhHHHHHHHHhhhcccceeeecCCeEEEEEEEEEEEeCcHHhh
Confidence            233445555555 3345555555667777742  1      12222322333332        34567999999999998


Q ss_pred             hh
Q 017125          145 YA  146 (377)
Q Consensus       145 ~~  146 (377)
                      |.
T Consensus       154 ~~  155 (157)
T d2zgya1         154 YE  155 (157)
T ss_dssp             HH
T ss_pred             hc
Confidence            75

>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Probable N-acetylglucosamine kinase CV2896
species: Chromobacterium violaceum [TaxId: 536]

Probab=88.28  E-value=1.7  Score=30.50  Aligned_cols=62  Identities=8%  Similarity=0.126  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHhcccccccCCCCCc---EEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhh
Q 017125           81 WDDMEKIWHHTFYNELRVAPEEHP---VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA  146 (377)
Q Consensus        81 ~~~~~~~~~~~~~~~L~~~~~~~~---vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~  146 (377)
                      |+.+.+.++.++ +..+....+..   +.+..+.......+..+.+.+   ..+..+.+.++..+|+++
T Consensus        46 ~~~i~~~i~~~~-~~ag~~~~~~~~~~~~~g~aG~~~~~~~~~l~~~~---~~~~~v~v~nDa~~A~~g  110 (114)
T d1zc6a1          46 WQAVLSTLEAAF-QQAGLPAAPASACAIGLGLSGVHNRQWAGEFESQA---PGFARLSLATDGYTTLLG  110 (114)
T ss_dssp             HHHHHHHHHHHH-HHTTCCCCCGGGEEEEEEESCCCTTSHHHHHHHTC---CCCSEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHcCCChhhhceeEEEEEecCCCcHHHHHHHHHhC---CCCCeEEEECHHHHHHHH
Confidence            455556666665 44444454433   445566666666666666544   344689999999998875

>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=84.76  E-value=0.14  Score=36.51  Aligned_cols=25  Identities=8%  Similarity=-0.097  Sum_probs=20.5

Q ss_pred             hhcccCCCCeEEEechhhhhhhhcC
Q 017125          124 IMFETFNTPAMYVAIQAVLSLYASG  148 (377)
Q Consensus       124 ~lfe~~~~~~v~~~~~~~~a~~~~g  148 (377)
                      .+.+.++.+.|.+.++.-|++|+..
T Consensus        84 ~l~~~~~~~~v~v~NDa~AaA~gi~  108 (110)
T d1q18a1          84 EMKKNLGFSHLEIINDFTAVSMAIP  108 (110)
T ss_dssp             HHHHHTTCSEEEEEEHHHHHHHHGG
T ss_pred             HHHHHhCCCcEEEEehHHHHhcccc
Confidence            3446788999999999999998753

>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ATPase domain of dehydratase reactivase alpha subunit
domain: Diol dehydratase-reactivating factor large subunit DdrA
species: Klebsiella oxytoca [TaxId: 571]

Probab=84.66  E-value=0.96  Score=34.42  Aligned_cols=54  Identities=26%  Similarity=0.381  Sum_probs=39.5

Q ss_pred             EEEeCCCCceEEEEee-CceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHh
Q 017125          153 IVLDSGDGVSHTVPIY-EGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEK  217 (377)
Q Consensus       153 lVVDiG~~~t~v~~v~-~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~  217 (377)
                      -|+|+|+++|+.+.|- +|.+.   ...+.=.|+.+|..+..-|   |.     .+..++|++|+.
T Consensus         7 AIlDlGaGStDAsii~~~g~v~---a~HlAGAG~mVTmlI~seL---Gl-----~d~~lAE~IKky   61 (203)
T d2d0oa3           7 AILDLGAGSTDASIINPKGDII---ATHLAGAGDMVTMIIAREL---GL-----EDRYLAEEIKKY   61 (203)
T ss_dssp             EEEEECSSEEEEEEECTTCCEE---EEEEECSHHHHHHHHHHHH---TC-----CCHHHHHHHHHS
T ss_pred             EEEEcCCCcccHHHhCCCCcEE---EEEecCcchHhHHHHHHhh---CC-----CcHHHHHHHhhc
Confidence            5789999999988775 44333   2345667999999998877   22     256789999874

>d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ATPase domain of dehydratase reactivase alpha subunit
domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit
species: Klebsiella pneumoniae [TaxId: 573]

Probab=81.89  E-value=1.4  Score=33.47  Aligned_cols=55  Identities=22%  Similarity=0.291  Sum_probs=40.0

Q ss_pred             EEEEeCCCCceEEEEee-CceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHh
Q 017125          152 GIVLDSGDGVSHTVPIY-EGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEK  217 (377)
Q Consensus       152 ~lVVDiG~~~t~v~~v~-~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~  217 (377)
                      --|+|+|+++|+.+.|- +|.+.   .....=.|+.+|..+..-|   |.     .+..++|++|+.
T Consensus         6 laIlDlG~GStDasii~~~g~v~---avhlAGAG~mVTmlI~~eL---Gl-----~d~~lAE~IKky   61 (202)
T d1nbwa3           6 LAILDLGAGSTDAAIVNAEGQIT---AVHLAGAGNMVSLLIKTEL---GL-----EDLSLAEAIKKY   61 (202)
T ss_dssp             EEEEEECSSEEEEEEECSSSCEE---EEEEECCHHHHHHHHHHHH---TC-----SCHHHHHHHHHS
T ss_pred             eEEEEcCCCccchhhccCCCcEE---EEEecCCchhhHHHHHHHh---CC-----CcHHHHHHHhhc
Confidence            35789999999988774 45443   2345667999999998887   22     246789999874

>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=80.50  E-value=0.37  Score=36.96  Aligned_cols=67  Identities=13%  Similarity=0.219  Sum_probs=44.8

Q ss_pred             hHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017125          276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       276 l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      |...|...+.-+++       +.|||.||.+..+-|.+++++.+.... ....+++....-.+.+.-.||+++|.
T Consensus       102 la~~l~~l~~~ldP-------~~IvlgG~i~~~~~~~~~i~~~~~~~~-~~~~~~I~~s~l~~~a~~~GAA~lA~  168 (170)
T d2aa4a2         102 LARLIADIKATTDC-------QCVVVGGSVGLAEGYLALVETYLAQEP-AAFHVDLLAAHYRHDAGLLGAALLAQ  168 (170)
T ss_dssp             HHHHHHHHHHHHCC-------SEEEEEHHHHTSTTHHHHHHHHHTTSC-GGGCCEEEECSCSSCHHHHHHHHHHH
T ss_pred             HHHHHHhhhheECC-------CEEEEeChhhhhhhHHHHHHHHHHhcc-CCCCCeEEecCCCCcHHHHHHHHHHC
Confidence            44444444444444       368888888888889888888776542 22345666555556788899999884

>d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.44  E-value=0.44  Score=36.51  Aligned_cols=70  Identities=11%  Similarity=0.097  Sum_probs=45.1

Q ss_pred             hHHHHHHHHhcCChhHHHHhhcCceeccCCcCC-cChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhccc
Q 017125          276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMF-PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLS  352 (377)
Q Consensus       276 l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i-~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~  352 (377)
                      |...+...+.-++++       .|||.|+.+.. +-|.+++++.+.........+++..+...+.+.-.||+.++--+
T Consensus        91 la~~l~n~~~~~dPe-------~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~~~~  161 (169)
T d2hoea2          91 FSIGLLNLIHLFGIS-------KIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSKVQEPVIAFGAAVHALEN  161 (169)
T ss_dssp             HHHHHHHHHHHHCCC-------EEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECCCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC-------EEEEeChHHhchHHHHHHHHHHHHHhcCCCCCCEEEECCCCCCHHHHHHHHHHHHH
Confidence            445555555555443       68888888753 55778888888876543334555555555677889998876543

>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Type II pantothenate kinase, CoaW
species: Staphylococcus aureus [TaxId: 1280]

Probab=80.10  E-value=0.51  Score=38.51  Aligned_cols=49  Identities=20%  Similarity=0.072  Sum_probs=36.6

Q ss_pred             cCceeccCC-cCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017125          297 GNIVLSGGS-TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       297 ~nIvl~GG~-s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      ..||+.||. +..|.|.+++++.++..     .+++.-+++++++.-+||+.+++
T Consensus       218 ~~Iv~~GG~~~~~~~l~~~i~~~~~~~-----~~~i~~~~~~~~aGaiGA~~L~~  267 (267)
T d2ewsa1         218 ENIVYIGSSFHNNALLRKVVEDYTVLR-----GCKPYYVENGAFSGAIGALYLEK  267 (267)
T ss_dssp             CEEEEESGGGTTCHHHHHHHHHHHHHT-----TCEEEECTTGGGHHHHHHHHTCC
T ss_pred             CCEEEECChhhcCHHHHHHHHHHHHhC-----CCEEEECCCccHHHHHHHHHhcC
Confidence            468888885 66888889988887653     23555567788888999988763