Citrus Sinensis ID: 017140

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
MEKEQQPPSSSKPIPSEIIYDILTKLPIKSLMRFRCLSKLCSSYITAPSFAELHALNFPIKTVGLLVTCPARLQTAQHFFSVDFDGGLAVPLLTIPPRFSRYTTRSVNGIILMDFGLYATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLNSWAIPGRDPEYRIFELGTNSWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVYVIHYDVVNRSMRRAEIFGLPEDRFSDLSSNTFRVINYEENVMSFT
cccccccccccccccHHHHHHHHccccHHHHHHHccccHHHHHHcccHHHHHHHHHHccccccEEEEEccccccccEEEEEccccccccccccccccccccEEEEEEEcEEEEEcccEEEEEccccccEEEccccccccccccccccEEEEEEEEEcccccEEEEEEEEEcccccEEEEEEEccccEEEcccccccccccccEEEccEEEEEEEEcccccccEEEEEEEccccEEEEEcccccccccccccEEEEEccEEEEEEEccccccEEEEEEEEEcccccEEEEEEEcccccccccccccccEEEEEEcccccEEEEEccccccEEEEEEEccccEEEEEEEEEccccccccccccEEEEcccccccEEcc
cccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccEEEEEEEcccccEEEEEccccccccccccccccccccEEEEccccEEEEEcccccEEEEccccccEEEcccccccccccccccEEEEEEEccccccccEEEEEEEEccccccEEEEEEEccccEEEEEcccccccccccEEEcEEEEEEEEEccccccEEEEEEEEccccEEEEEEcccHHcccccccEEEEEccEEEEEEEEcccccEEEEEEEEcccccccEEEEEEEcccccccEEEccEEEEEEEEEcccEEEEEcccccccEEEEEEcccccEEEEEEEEccccccccccccEEEEEccccccHHHcc
mekeqqppssskpipseiIYDILTKLPIKSLMRFRCLSKLCssyitapsfaelhalnfpiktvglLVTCPARLQTAQHFfsvdfdgglavplltipprfsryttrsvngiILMDFGLyatlcnpstrqtfntpfvcsltspsvnstyfcvnsfgfdpvskkykvlnswaipgrdpeyrifelgtnswrplkggpnyypqresvcvdGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIKVFlpedygeeilEEDIDYFVDCIgrnnelllvpqtvsdsvYVIHYDVVNRSMRRaeifglpedrfsdlssntfrVINYEENVMSFT
mekeqqppssskpipseiIYDILTKLPIKSLMRFRCLSKLCSSYITAPSFAELHALNFPIKTVGLLVTCPARLQTAQHFFSVDFDGGLAVPLLTIPPRFSRYTTRSVNGIILMDFGLYATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLNswaipgrdpEYRIFELGTNSWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLlvpqtvsdsvYVIHYDVVNRSMRRAEIFglpedrfsdlssntfrvinyeenvmsft
MekeqqppssskpipseiiYDILTKLPIKSLMRFRCLSKLCSSYITAPSFAELHALNFPIKTVGLLVTCPARLQTAQHFFSVDFDGGLAVPLLTIPPRFSRYTTRSVNGIILMDFGLYATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLNSWAIPGRDPEYRIFELGTNSWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVYVIHYDVVNRSMRRAEIFGLPEDRFSDLSSNTFRVINYEENVMSFT
****************EIIYDILTKLPIKSLMRFRCLSKLCSSYITAPSFAELHALNFPIKTVGLLVTCPARLQTAQHFFSVDFDGGLAVPLLTIPPRFSRYTTRSVNGIILMDFGLYATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLNSWAIPGRDPEYRIFELGTNSWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVYVIHYDVVNRSMRRAEIFGLPEDRFSDLSSNTFRVINY********
*****************IIYDILTKLPIKSLMRFRCLSKLCSSYITAPSFAELHALNFPIKTVGLLVTCPARLQTAQHFFSVDFDGGLAVPLLTIPPRFSRYTTRSVNGIILMDFGLYATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLNSWAIPGRDPEYRIFELGTNSWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVYVIHYDVVNRSMRRAEIFGLPEDRFSDLSSNTFRVINYEENVMSFT
************PIPSEIIYDILTKLPIKSLMRFRCLSKLCSSYITAPSFAELHALNFPIKTVGLLVTCPARLQTAQHFFSVDFDGGLAVPLLTIPPRFSRYTTRSVNGIILMDFGLYATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLNSWAIPGRDPEYRIFELGTNSWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVYVIHYDVVNRSMRRAEIFGLPEDRFSDLSSNTFRVINYEENVMSFT
***********KPIPSEIIYDILTKLPIKSLMRFRCLSKLCSSYITAPSFAELHALNFPIKTVGLLVTCPARLQTAQHFFSVDFDGGLAVPLLTIPPRFSRYTTRSVNGIILMDFGLYATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLNSWAIPGRDPEYRIFELGTNSWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVYVIHYDVVNRSMRRAEIFGLPEDRFSDLSSNTFRVINYEENVMSFT
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MEKEQQPPSSSKPIPSEIIYDILTKLPIKSLMRFRCLSKLCSSYITAPSFAELHALNFPIKTVGLLVTCPARLQTAQHFFSVDFDGGLAVPLLTIPPRFSRYTTRSVNGIILMDFGLYATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLNSWAIPGRDPEYRIFELGTNSWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVYVIHYDVVNRSMRRAEIFGLPEDRFSDLSSNTFRVINYEENVMSFT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query376 2.2.26 [Sep-21-2011]
Q9SY20399 F-box protein At1g30790 O yes no 0.880 0.829 0.283 6e-28
Q9LV12379 Putative F-box protein At no no 0.835 0.828 0.272 9e-25
Q5BPS3387 F-box protein DOR OS=Arab no no 0.851 0.826 0.261 2e-24
Q9FJJ4420 F-box protein At5g62510 O no no 0.898 0.804 0.253 2e-24
Q9LM89422 Putative F-box protein At no no 0.888 0.791 0.255 2e-24
Q3E7D1403 F-box protein At2g40925 O no no 0.845 0.789 0.269 5e-24
O49565417 Putative F-box protein At no no 0.869 0.784 0.301 1e-23
Q3EBI7449 F-box protein At2g40910 O no no 0.851 0.712 0.240 1e-21
Q9SS35389 Putative F-box protein At no no 0.901 0.871 0.276 3e-21
O49421411 F-box protein At4g19940 O no no 0.925 0.846 0.256 5e-21
>sp|Q9SY20|FB20_ARATH F-box protein At1g30790 OS=Arabidopsis thaliana GN=At1g30790 PE=2 SV=2 Back     alignment and function desciption
 Score =  125 bits (313), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 173/371 (46%), Gaps = 40/371 (10%)

Query: 14  IPSEIIYDILTKLPIKSLMRFRCLSKLCSSYITAPSFAE---------------LHALNF 58
           IP ++  +ILT+LP KSLM+F+C+SKL SS I   SF +                   +F
Sbjct: 9   IPFDLTVEILTRLPAKSLMKFKCVSKLWSSIIHNQSFIDSFYSISSTRPRFIVAFSNGSF 68

Query: 59  PIKTVGLLVTCPARLQTAQHFFSVDFDGGLAVPLLTIPPRFSRYTTRSVNGIILMDFGLY 118
           P      L    +  +  +   SV  +    +P LT+    +     SVNG I       
Sbjct: 69  PSDKEKRLFIFSSSHEGHESSSSVITNLDTTIPSLTVSNNLASRCI-SVNGFIACSLYTR 127

Query: 119 ATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLN--SWAIPGRDP- 175
            T+CNPSTRQ    P + S  +P + ST  C+   G+DPV  ++K L   S  IP +D  
Sbjct: 128 FTICNPSTRQVIVLPILPSGRAPDMRST--CI---GYDPVDDQFKALALISSCIPNKDST 182

Query: 176 -EYRIFELGTN----SWRPLKGG---PNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIA 227
            E+ +  L  +    SWR ++G    P Y P    VC++G VY+ +W +  ++   V++ 
Sbjct: 183 VEHLVLTLKGDKKNYSWRQIQGNNNIPPYSPVTMRVCINGVVYYGAW-TPRQSMNAVIVC 241

Query: 228 FDLHEESFRVIEIPAKALARRSESELIVYSGRPA-IADHLLLEDATMTIWVLDENDGDYW 286
           FD+  E    I+ P   +   ++S L+ Y G+ A I  +      T  +WVL++ +   W
Sbjct: 242 FDVRSEKITFIKTPKDVVRWCNDSILMEYKGKLASIVRNRYSRFDTFDLWVLEDIEKQEW 301

Query: 287 VQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSD----SVYVIHYDVVNRSM 342
            +    +P    + +  E+ +     I +  E++L P  +S     S Y+ +Y V  + +
Sbjct: 302 SKQTCEIPLSVWDSV--ENFNMSFPGINKFGEIILAPTCLSGYHLRSFYIFYYHVETKKI 359

Query: 343 RRAEIFGLPED 353
           RR  + G+ +D
Sbjct: 360 RRVRLEGIADD 370

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LV12|FB299_ARATH Putative F-box protein At5g62660 OS=Arabidopsis thaliana GN=At5g62660 PE=4 SV=1 Back     alignment and function description
>sp|Q5BPS3|DOR_ARATH F-box protein DOR OS=Arabidopsis thaliana GN=DOR PE=1 SV=2 Back     alignment and function description
>sp|Q9FJJ4|FB298_ARATH F-box protein At5g62510 OS=Arabidopsis thaliana GN=At5g62510 PE=2 SV=1 Back     alignment and function description
>sp|Q9LM89|FB12_ARATH Putative F-box protein At1g20657 OS=Arabidopsis thaliana GN=At1g20657 PE=4 SV=1 Back     alignment and function description
>sp|Q3E7D1|FB131_ARATH F-box protein At2g40925 OS=Arabidopsis thaliana GN=At2g40925 PE=2 SV=1 Back     alignment and function description
>sp|O49565|FB239_ARATH Putative F-box protein At4g21240 OS=Arabidopsis thaliana GN=At4g21240 PE=4 SV=1 Back     alignment and function description
>sp|Q3EBI7|FB130_ARATH F-box protein At2g40910 OS=Arabidopsis thaliana GN=At2g40910 PE=2 SV=1 Back     alignment and function description
>sp|Q9SS35|FB137_ARATH Putative F-box protein At3g10240 OS=Arabidopsis thaliana GN=At3g10240 PE=4 SV=1 Back     alignment and function description
>sp|O49421|FB238_ARATH F-box protein At4g19940 OS=Arabidopsis thaliana GN=At4g19940 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
147770772 862 hypothetical protein VITISV_008876 [Viti 0.960 0.418 0.282 4e-29
15221502399 F-box domain-containing protein [Arabido 0.880 0.829 0.283 4e-26
4926821 502 T17H7.6 [Arabidopsis thaliana] 0.880 0.659 0.283 4e-26
297852444370 hypothetical protein ARALYDRAFT_314261 [ 0.851 0.864 0.272 2e-25
297816514420 hypothetical protein ARALYDRAFT_906605 [ 0.890 0.797 0.266 2e-23
15241905379 putative F-box protein [Arabidopsis thal 0.835 0.828 0.272 6e-23
147770773289 hypothetical protein VITISV_008877 [Viti 0.630 0.820 0.317 9e-23
15225089387 F-box protein DOR [Arabidopsis thaliana] 0.851 0.826 0.261 1e-22
15241861420 F-box family protein [Arabidopsis thalia 0.898 0.804 0.253 1e-22
75264020422 RecName: Full=Putative F-box protein At1 0.888 0.791 0.255 1e-22
>gi|147770772|emb|CAN60954.1| hypothetical protein VITISV_008876 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 187/407 (45%), Gaps = 46/407 (11%)

Query: 3   KEQQPPSSSKP--------IPSEIIYDILTKLPIKSLMRFRCLSKLCSSYITAPSFAELH 54
           KE+Q   S  P        IP E++++ILT +P+KSL++ R + K   S I+ PSF E H
Sbjct: 462 KEKQTRKSHAPRMKENPVSIPDELVFEILTYIPVKSLLQCRGVCKRWRSMISDPSFIEAH 521

Query: 55  ALNFPIKTVGLLVTCP--ARLQTAQHFFSVDFDGGLAVPLLTIPPRFSRY--TTRSVNGI 110
                     LL++ P   R +   H FS+    G A  L       SR+  T++SVNG+
Sbjct: 522 RSR---SATTLLISFPDTHRPRRKHHLFSI--RDGEARQLSG-----SRHWNTSQSVNGL 571

Query: 111 ILM---------DFGLYATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKK 161
           I +               TLCNPSTR+    P     ++P +   +  + S GFDP +K 
Sbjct: 572 ICLYEQHDRSFPKLSFRVTLCNPSTRERVTLP-PTRFSNPDLCFDHQHI-SLGFDPSTKT 629

Query: 162 YKVLNSWAIPGRDPEYRIFELGTNSWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKN- 220
           YK+L  W          I  LG  +WR +K G  Y  + + +C++G +Y+       ++ 
Sbjct: 630 YKILKVWFERFNSIMCEILTLGXRAWRIIKDGLEYTLEAKGICLNGTIYWADARHISEDY 689

Query: 221 -----GRTVLIAFDLHEESFRVIEIPAKA-LARRSESELIVYSGRPAIADHLLLE---DA 271
                 +  +IAFD+ EE FR + +P +  +  +  S +I   G  AIAD+  +      
Sbjct: 690 PHFVVMQNRVIAFDVGEEKFRSVPVPPEVPIWDKCMSSIIQIGGHMAIADYQHVATGIST 749

Query: 272 TMTIWVLDENDGDYWVQIKVFLPEDY-GEEILEEDIDYFVDCIGRNNELLLVPQTVSDSV 330
            M IW L+++    W Q ++ LPE +    +    + +F         ++L+P       
Sbjct: 750 VMLIWKLEDSVNGIWSQKRILLPESWIHRSVPNPRLCHFCVASSDGGNIILIPSGFFRDF 809

Query: 331 YVIHYDVVNRSMRRAEIFGLPEDRFSDLSS--NTFRVINYEENVMSF 375
           YV+H +V    + R  I   P+D +   SS   + +V  Y E+++S 
Sbjct: 810 YVLHCNVEEGRLWREAIRRPPQDDWDSRSSIVTSRQVCEYVESLVSL 856

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15221502|ref|NP_174365.1| F-box domain-containing protein [Arabidopsis thaliana] gi|142989205|sp|Q9SY20.2|FB20_ARATH RecName: Full=F-box protein At1g30790 gi|332193151|gb|AEE31272.1| F-box domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4926821|gb|AAD32931.1|AC004135_6 T17H7.6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297852444|ref|XP_002894103.1| hypothetical protein ARALYDRAFT_314261 [Arabidopsis lyrata subsp. lyrata] gi|297339945|gb|EFH70362.1| hypothetical protein ARALYDRAFT_314261 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297816514|ref|XP_002876140.1| hypothetical protein ARALYDRAFT_906605 [Arabidopsis lyrata subsp. lyrata] gi|297321978|gb|EFH52399.1| hypothetical protein ARALYDRAFT_906605 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15241905|ref|NP_201072.1| putative F-box protein [Arabidopsis thaliana] gi|75264265|sp|Q9LV12.1|FB299_ARATH RecName: Full=Putative F-box protein At5g62660 gi|8809662|dbj|BAA97213.1| unnamed protein product [Arabidopsis thaliana] gi|332010257|gb|AED97640.1| putative F-box protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147770773|emb|CAN60955.1| hypothetical protein VITISV_008877 [Vitis vinifera] Back     alignment and taxonomy information
>gi|15225089|ref|NP_180705.1| F-box protein DOR [Arabidopsis thaliana] gi|229807544|sp|Q5BPS3.2|DOR_ARATH RecName: Full=F-box protein DOR; AltName: Full=Protein DROUGHT TOLERANCE REPRESSOR gi|4589954|gb|AAD26472.1| hypothetical protein [Arabidopsis thaliana] gi|330253458|gb|AEC08552.1| F-box protein DOR [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15241861|ref|NP_201057.1| F-box family protein [Arabidopsis thaliana] gi|75262555|sp|Q9FJJ4.1|FB298_ARATH RecName: Full=F-box protein At5g62510 gi|10178082|dbj|BAB11501.1| unnamed protein product [Arabidopsis thaliana] gi|332010233|gb|AED97616.1| F-box family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|75264020|sp|Q9LM89.1|FB12_ARATH RecName: Full=Putative F-box protein At1g20657 gi|8886950|gb|AAF80636.1|AC069251_29 F2D10.14 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
TAIR|locus:2154169420 AT5G62510 "AT5G62510" [Arabido 0.917 0.821 0.262 2.2e-27
TAIR|locus:2172239379 AT5G62660 "AT5G62660" [Arabido 0.803 0.796 0.301 5.7e-27
TAIR|locus:2127333417 AT4G21240 "AT4G21240" [Arabido 0.845 0.762 0.305 3.2e-26
TAIR|locus:2196964399 AT1G30790 "AT1G30790" [Arabido 0.678 0.639 0.285 2.6e-24
TAIR|locus:504955955403 AT2G40925 "AT2G40925" [Arabido 0.845 0.789 0.280 1.1e-23
TAIR|locus:2061325387 DOR "AT2G31470" [Arabidopsis t 0.821 0.798 0.264 2.9e-23
TAIR|locus:2202440391 AT1G47730 "AT1G47730" [Arabido 0.829 0.797 0.303 7.8e-23
TAIR|locus:2825787312 AT1G46912 "AT1G46912" [Arabido 0.635 0.766 0.265 8e-21
TAIR|locus:2152064392 AT5G65850 "AT5G65850" [Arabido 0.867 0.831 0.262 1.2e-20
TAIR|locus:2076309389 AT3G10240 "AT3G10240" [Arabido 0.882 0.853 0.276 2.4e-20
TAIR|locus:2154169 AT5G62510 "AT5G62510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 98/374 (26%), Positives = 183/374 (48%)

Query:    21 DILTKLPIKSLMRFRCLSKLCSSYITAPSFAELH-ALNFPIKTVGLLVT-----CPAR-- 72
             +ILT+LP KSLMRF+C+SK  SS I +  F+  +  +  P++   L ++     C +R  
Sbjct:    51 EILTRLPHKSLMRFKCVSKQWSSLIRSRFFSNRYLTVASPLRPHRLYISLVDHKCDSREV 110

Query:    73 LQTAQHFFSVDFDGGLAVPL-LTIPPRFSRYTTRSVNGIILMDFGLYATLCNPSTRQTFN 131
               + +    + F    +    LT           ++ G+IL      A L NP+TRQ+  
Sbjct:   111 CHSPRESVLLSFSSPSSFDQDLTTMQGMGGLHMVTLRGLILYIVCGKACLYNPTTRQSVT 170

Query:   132 TPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLNSW-AIPGRD-----PEYRIF--ELG 183
              P +        N  +  +   G DPV  +YKV+ ++ +   +D      E+ +F  E+G
Sbjct:   171 LPAIKFNIFVQGNE-HSLLYFLGHDPVLDQYKVVCTFVSSSSQDLETIISEHWVFVLEVG 229

Query:   184 TNSWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAK 243
               SW+ ++    + P R  +C+ G +Y+ ++ S  ++   +++ FD+  E F +I+ P  
Sbjct:   230 -GSWKRIEFDQPHTPTRSGLCIGGVIYYLAFTSMFQD---IVVTFDVRSEEFNIIQAPLV 285

Query:   244 ALARRSESELIVYSGRPAIADHLLL-EDATMTIWVLDENDGDYWVQIKVFLPEDYGEEIL 302
               A     + I Y G+PAI  H  L E+  + +WVL EN G+ W +  + L +     ++
Sbjct:   286 LSAYVDSLDFIEYGGKPAIFYHTSLKENGLVDLWVL-ENAGN-WSRTVLSL-QPCQLHLV 342

Query:   303 EEDIDYFVDCIGRNNELLLVPQTVSDSVYVIHYDVVNRSMRRAEIFGLPE---DRFSDLS 359
             + DI   +    +N E++LVP  +    Y+++YD+    +R+ EI  +P+   D    + 
Sbjct:   343 DNDIPLTLVDTTQNGEVVLVPSDLCSPFYILYYDIQKNHLRKVEIQAMPDHKKDGIKGIP 402

Query:   360 SNTFRVINYEENVM 373
                F++++  E+++
Sbjct:   403 DFGFKLMDKSESII 416
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2172239 AT5G62660 "AT5G62660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127333 AT4G21240 "AT4G21240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196964 AT1G30790 "AT1G30790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955955 AT2G40925 "AT2G40925" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061325 DOR "AT2G31470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202440 AT1G47730 "AT1G47730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825787 AT1G46912 "AT1G46912" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152064 AT5G65850 "AT5G65850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076309 AT3G10240 "AT3G10240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 6e-28
pfam08268125 pfam08268, FBA_3, F-box associated domain 3e-12
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 0.002
pfam0064648 pfam00646, F-box, F-box domain 0.003
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score =  109 bits (274), Expect = 6e-28
 Identities = 57/236 (24%), Positives = 108/236 (45%), Gaps = 15/236 (6%)

Query: 106 SVNGIILMDFGLYATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVL 165
             +G+I   +G    + NPST Q+   P   S  S   + TYF     G+DP+ K+YKVL
Sbjct: 3   PCDGLICFSYGKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYF----LGYDPIEKQYKVL 58

Query: 166 --NSWAIPGRDPEYRIFELGTNSWRPLKG-GPNYYPQRESVCVDGFVYFRSWVSTHKNGR 222
             +  +      E++++ LG+NSWR ++   P++  +   VC++G +Y+ +  +   N  
Sbjct: 59  CFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLA-YTLKTNPD 117

Query: 223 TVLIAFDLHEESFRV-IEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWVLDEN 281
             +++FD+  E F+  I +P           LI Y G+ A+       +    +WVL++ 
Sbjct: 118 YFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTN-NFDLWVLNDA 176

Query: 282 DGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVYVIHYDV 337
               W ++         + + +  +  F D      E++L      +  Y+ +Y+V
Sbjct: 177 GKQEWSKLFTVPIPPLPDLVDDNFLSGFTD----KGEIVLCC-EDENPFYIFYYNV 227

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|219769 pfam08268, FBA_3, F-box associated domain Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 376
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.71
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.59
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.25
PHA02713557 hypothetical protein; Provisional 99.24
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.13
PHA02790480 Kelch-like protein; Provisional 99.08
PHA03098534 kelch-like protein; Provisional 99.07
PHA02713557 hypothetical protein; Provisional 99.07
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.98
PLN02153341 epithiospecifier protein 98.97
PLN02193470 nitrile-specifier protein 98.84
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.79
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.78
PHA03098534 kelch-like protein; Provisional 98.73
PHA02790480 Kelch-like protein; Provisional 98.67
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.65
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.57
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.57
PLN02193470 nitrile-specifier protein 98.51
PLN02153341 epithiospecifier protein 98.48
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.47
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.39
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.17
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.17
KOG4693392 consensus Uncharacterized conserved protein, conta 98.07
KOG4693392 consensus Uncharacterized conserved protein, conta 97.64
KOG1230 521 consensus Protein containing repeated kelch motifs 97.61
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.57
KOG0281499 consensus Beta-TrCP (transducin repeats containing 97.44
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 97.29
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.96
KOG1230 521 consensus Protein containing repeated kelch motifs 96.6
KOG2997366 consensus F-box protein FBX9 [General function pre 95.54
PF1396450 Kelch_6: Kelch motif 95.39
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 95.03
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 94.81
smart00284255 OLF Olfactomedin-like domains. 93.98
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 93.61
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 93.49
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 92.33
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 91.25
KOG3545249 consensus Olfactomedin and related extracellular m 90.71
KOG0310 487 consensus Conserved WD40 repeat-containing protein 89.35
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 87.98
smart0061247 Kelch Kelch domain. 87.8
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 87.37
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 86.76
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 86.26
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 85.73
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 85.03
TIGR03074 764 PQQ_membr_DH membrane-bound PQQ-dependent dehydrog 84.15
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 81.85
PF1396450 Kelch_6: Kelch motif 81.55
KOG4341483 consensus F-box protein containing LRR [General fu 80.5
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=1.6e-30  Score=231.95  Aligned_cols=218  Identities=25%  Similarity=0.485  Sum_probs=155.7

Q ss_pred             ccceeeEE-EecCCeeEEEEcCCCCceeeCCCceeecCCCCCCc---cce-eEEEeEeCCCCcEEEEEEeec--CCCCCc
Q 017140          104 TRSVNGII-LMDFGLYATLCNPSTRQTFNTPFVCSLTSPSVNST---YFC-VNSFGFDPVSKKYKVLNSWAI--PGRDPE  176 (376)
Q Consensus       104 ~~s~~Gll-~~~~~~~~~V~NP~T~~~~~~p~~~~L~~P~~~~~---~~~-~~~l~~d~~~~~ykvv~~~~~--~~~~~~  176 (376)
                      +++||||| +.... .++||||+||+++      .|  |++...   ... ..+||||+.+++||||++...  ......
T Consensus         1 ~~sCnGLlc~~~~~-~~~V~NP~T~~~~------~L--P~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~   71 (230)
T TIGR01640         1 VVPCDGLICFSYGK-RLVVWNPSTGQSR------WL--PTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSE   71 (230)
T ss_pred             CcccceEEEEecCC-cEEEECCCCCCEE------ec--CCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCcc
Confidence            47999999 65555 8999999999999      66  544321   112 389999999999999995332  123578


Q ss_pred             EEEEEeCCCceEECcCCCCccC-CCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceE-EEecChhhhccCCccceE
Q 017140          177 YRIFELGTNSWRPLKGGPNYYP-QRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFR-VIEIPAKALARRSESELI  254 (376)
Q Consensus       177 ~~vyss~~~~W~~~~~~~~~~~-~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~-~i~lP~~~~~~~~~~~l~  254 (376)
                      ++||++++++||.++..++... ...+|++||.+||++....... ...|++||+++|+|+ .+++|...........|+
T Consensus        72 ~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~-~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~  150 (230)
T TIGR01640        72 HQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNP-DYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLI  150 (230)
T ss_pred             EEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCC-cEEEEEEEcccceEeeeeecCccccccccceEEE
Confidence            9999999999999885443322 3349999999999997543211 137999999999999 599997653222246799


Q ss_pred             EeCCeEEEEEccCCCCCeEEEEEeccCCCCCeEEEE-EEcCCCcccccccccccceeEEee--cCCeEEEeecccCCCcE
Q 017140          255 VYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIK-VFLPEDYGEEILEEDIDYFVDCIG--RNNELLLVPQTVSDSVY  331 (376)
Q Consensus       255 ~~~G~L~l~~~~~~~~~~l~IW~l~~~~~~~W~~~~-~~lp~~~~~~~~~~~~~~~~~~~~--~~g~ill~~~~~~~~~~  331 (376)
                      +++|+|+++.... ....++||+|++++++.|++.. +.+|. +.. +..    . ..+.+  ++|+|++.... .....
T Consensus       151 ~~~G~L~~v~~~~-~~~~~~IWvl~d~~~~~W~k~~~i~~~~-~~~-~~~----~-~~~~~~~~~g~I~~~~~~-~~~~~  221 (230)
T TIGR01640       151 NYKGKLAVLKQKK-DTNNFDLWVLNDAGKQEWSKLFTVPIPP-LPD-LVD----D-NFLSGFTDKGEIVLCCED-ENPFY  221 (230)
T ss_pred             EECCEEEEEEecC-CCCcEEEEEECCCCCCceeEEEEEcCcc-hhh-hhh----h-eeEeEEeeCCEEEEEeCC-CCceE
Confidence            9999999998732 2356999999998877899863 43332 111 222    1 22343  68999998642 12345


Q ss_pred             EEEEeCCCC
Q 017140          332 VIHYDVVNR  340 (376)
Q Consensus       332 l~~ydl~t~  340 (376)
                      ++.||++++
T Consensus       222 ~~~y~~~~~  230 (230)
T TIGR01640       222 IFYYNVGEN  230 (230)
T ss_pred             EEEEeccCC
Confidence            999999885

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.32
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.29
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.29
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.26
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.24
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.24
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.2
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.19
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.11
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.1
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.07
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.06
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 99.0
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.96
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.94
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.79
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.69
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.52
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.43
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.3
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.24
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.19
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.79
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.78
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.52
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.51
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.29
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 93.53
3jro_A 753 Fusion protein of protein transport protein SEC13 89.8
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 87.07
2bkl_A 695 Prolyl endopeptidase; mechanistic study, celiac sp 85.87
3jrp_A 379 Fusion protein of protein transport protein SEC13 84.12
4e54_B435 DNA damage-binding protein 2; beta barrel, double 83.56
1yr2_A 741 Prolyl oligopeptidase; prolyl endopeptidase, mecha 82.68
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 82.58
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
Probab=99.32  E-value=2.6e-10  Score=104.93  Aligned_cols=201  Identities=9%  Similarity=0.059  Sum_probs=130.0

Q ss_pred             eEEEEcCCCCceeeCCCceeecCCCCCCccceeEEEeEeCCCCcEEEEE-Eee--cCCCCCcEEEEEeCCCceEECcCCC
Q 017140          118 YATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLN-SWA--IPGRDPEYRIFELGTNSWRPLKGGP  194 (376)
Q Consensus       118 ~~~V~NP~T~~~~~~p~~~~L~~P~~~~~~~~~~~l~~d~~~~~ykvv~-~~~--~~~~~~~~~vyss~~~~W~~~~~~~  194 (376)
                      .++++||.|++|.      .+  |+.+..+........   .+...|++ ...  .......+++|+..+++|+.+...+
T Consensus        68 ~~~~~d~~~~~W~------~~--~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p  136 (315)
T 4asc_A           68 YFLQFDHLDSEWL------GM--PPLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLP  136 (315)
T ss_dssp             EEEEEETTTTEEE------EC--CCBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCS
T ss_pred             ceEEecCCCCeEE------EC--CCCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCC
Confidence            4899999999999      66  555433222122222   22223333 221  1234678999999999999998777


Q ss_pred             CccCCCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEEe-cChhhhccCCccceEEeCCeEEEEEccCCCCCeE
Q 017140          195 NYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIE-IPAKALARRSESELIVYSGRPAIADHLLLEDATM  273 (376)
Q Consensus       195 ~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~-lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~~l  273 (376)
                      ..+....++.++|++|.+++..........+..||+.+.+|+.++ +|....    ....+..+|+|+++.........-
T Consensus       137 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~~~~  212 (315)
T 4asc_A          137 YVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARS----LFGATVHDGRIIVAAGVTDTGLTS  212 (315)
T ss_dssp             SCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCB----SCEEEEETTEEEEEEEECSSSEEE
T ss_pred             CcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchh----ceEEEEECCEEEEEeccCCCCccc
Confidence            665567788899999999986322211247999999999999984 454332    445677899999998754333344


Q ss_pred             EEEEeccCCCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeeccc-----------CCCcEEEEEeCCCCcE
Q 017140          274 TIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTV-----------SDSVYVIHYDVVNRSM  342 (376)
Q Consensus       274 ~IW~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~-----------~~~~~l~~ydl~t~~~  342 (376)
                      ++|+++ ...+.|+.+. .+|..    ...      ..++..+|.|+++.-..           .....+..||+++++|
T Consensus       213 ~~~~yd-~~~~~W~~~~-~~p~~----r~~------~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  280 (315)
T 4asc_A          213 SAEVYS-ITDNKWAPFE-AFPQE----RSS------LSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW  280 (315)
T ss_dssp             EEEEEE-TTTTEEEEEC-CCSSC----CBS------CEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred             eEEEEE-CCCCeEEECC-CCCCc----ccc------eeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence            678875 3456899974 45532    111      11222366777764210           0124589999999999


Q ss_pred             EEE
Q 017140          343 RRA  345 (376)
Q Consensus       343 ~~v  345 (376)
                      +.+
T Consensus       281 ~~~  283 (315)
T 4asc_A          281 EGV  283 (315)
T ss_dssp             EEE
T ss_pred             hhh
Confidence            998
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.14
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.62
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.56
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.54
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.34
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.07
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.51
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.08
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 85.15
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=5.6e-12  Score=77.15  Aligned_cols=39  Identities=18%  Similarity=0.347  Sum_probs=36.7

Q ss_pred             CCCCHHHHHHHhcCCCccccceeeeccccchhhccChhh
Q 017140           12 KPIPSEIIYDILTKLPIKSLMRFRCLSKLCSSYITAPSF   50 (376)
Q Consensus        12 ~~LP~Dll~~IL~rLP~~~l~r~r~VCK~W~~li~s~~F   50 (376)
                      ..||+|++.+||+.||++++.|+++|||+|+.+++++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            579999999999999999999999999999999998764
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure