Citrus Sinensis ID: 017141

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
Protein Sequence
MAAYMPQTENPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATIVGLAISSDASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTCLLQVTISFGQQYFALST
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEccccccccccccEEEEEEEccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEccccccccHHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccEEEEccccccccHHHHHcccEEEEEEEccccccccccEEEEEEEEEEEccccEEEEEccccccccccccEEEEcccccccccEEEccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccEccHHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHHHHHccccEEEEEEcccccccccccEEEEEEEccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccccEEEEEEEcccccccccccccccccHHHHHHHHHHHcHHHcccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHccccccccccccEEEEEEEEEEcccccEEEEEcccccHHHcccEEEEEEcEEcccEEEEEEcccccccccccc
Coil and Loop (DISEMBL)
maaympqtenpspaiyiprewsdaadsiaydsntspppiaficgakncgkttFSRHLVNVLLQRYKKVayldtdvgqpeftapgflsltvvdtltpdltipclktpkrcyffgdvsskrdptAYLKYITTLYDYYRKEYYmfnesespgrtelplivntpgwvkgIGYDILVDMLKYITPTHVVKINISFekknlpagafwldnfegvdvNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRqcfpsdlnITIIKELAQALaayppyqvpissikirhlycqvprseifYSLNATIVGLAIssdasenlphcvglGIVRGIDTLKGLLyvitpvppgiLEKVDLFLQGFIQIPTCLLQVTISFGQQYFALST
Flexible Loop (DISEMBL)
maaympqtenpspaiyIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDltipclktpkrcyffgdvsskrdptayLKYITTLYDYYRKEYYMFNEsespgrtelplIVNTPGWVKGIGYDILVDMLKYITPTHVVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISsarqdsfnrsvlvqkdaRLLRDLRIMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATIVGLAISSDASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTCLLQVTISFGQQYFALST
Low Complexity Region (SEG)
MAAYMPQTENPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFlsltvvdtltpdltIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATIVGLAISSDASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTCLLQVTISFGQQYFALST
Disordered region (IsUnstruct)
**************IYIPREWSDAADSIAY******PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESE*PGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATIVGLAISSDASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTCLLQVTISFGQQYFA***
Disordered Region (DISOPRED)
**A************YI**EWSD***************IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATIVGLAISSDASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTCLLQVTISFGQQYFAL**
Disordered Region (DISEMBL)
*********NPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATIVGLAISSDASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTCLLQVTISFGQQYFALST
Disordered Region (DISPRO)
*AA*MPQTENPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATIVGLAISSDASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTCLLQVTISFGQQYFAL**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAYMPQTENPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATIVGLAISSDASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTCLLQVTISFGQQYFALST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	376	2.2.26 [Sep-21-2011]
Q8VYP6	368	Polynucleotide 5'-hydroxy	yes	no	0.930	0.951	0.628	1e-134
E1BPN0	694	Polynucleotide 5'-hydroxy	yes	no	0.805	0.436	0.294	4e-35
Q3TZX8	714	Polynucleotide 5'-hydroxy	yes	no	0.805	0.424	0.290	5e-35
Q5SY16	702	Polynucleotide 5'-hydroxy	yes	no	0.805	0.431	0.296	2e-34
Q9UU96	736	Polynucleotide 5'-hydroxy	yes	no	0.835	0.426	0.258	2e-22
Q54Z27	683	Polynucleotide 5'-hydroxy	yes	no	0.420	0.231	0.322	3e-22
P0CM78	744	Polynucleotide 5'-hydroxy	yes	no	0.888	0.448	0.253	3e-22
P0CM79	744	Polynucleotide 5'-hydroxy	N/A	no	0.888	0.448	0.253	3e-22
Q4IR18	720	Polynucleotide 5'-hydroxy	yes	no	0.781	0.408	0.273	6e-22
A8WQV9	548	Polynucleotide 5'-hydroxy	N/A	no	0.832	0.571	0.284	2e-19

>sp|Q8VYP6|NOL9_ARATH Polynucleotide 5'-hydroxyl-kinase NOL9 OS=Arabidopsis thaliana GN=At5g11010 PE=2 SV=1

 Score =  477 bits (1227), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 227/361 (62%), Positives = 290/361 (80%), Gaps = 11/361 (3%)

Query: 5   MPQTENPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR 64
           M + EN  P  +IP EWS+AA S++   ++  P IA +CG KN GK+TFSR+LV VLLQR
Sbjct: 1   MSEAENKLP--FIPEEWSNAASSVS--CSSLQPVIALVCGPKNSGKSTFSRNLVEVLLQR 56

Query: 65  YKKVAYLDTDVGQPEFTAPGFLSLTVVDT--LTPDLTIPCLKTPKRCYFFGDVSSKRDPT 122
           YK+VAYLDTDVGQPEFTAPGFLSLT+VD   L  D T+PC+KTP+RC+F+GDVSSKRDP 
Sbjct: 57  YKRVAYLDTDVGQPEFTAPGFLSLTIVDKSILESDWTVPCVKTPERCFFYGDVSSKRDPK 116

Query: 123 AYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTH 182
           AYL+Y+ TL+DYY+  +   +E+    +TELPL++NTPGWVKGIGY++LVD+L+Y++P+H
Sbjct: 117 AYLRYVYTLFDYYQLHFCKSSEN----KTELPLVINTPGWVKGIGYELLVDVLRYVSPSH 172

Query: 183 VVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIM 242
           VVKINIS   KNLPAG FWLD  +    +LIEI SA QD +N+S+L+ KDARL+RD+RI+
Sbjct: 173 VVKINISAYNKNLPAGLFWLDGNDDETAHLIEIQSAYQDRYNQSILIHKDARLMRDMRII 232

Query: 243 AYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATIVG 302
           AYFRQCF     +  IKEL   LA++ PY+VPISS+ I HL+CQ+P SE++YSLNA+IVG
Sbjct: 233 AYFRQCFKGK-EVNTIKELTHELASHIPYEVPISSLTINHLHCQIPSSEVYYSLNASIVG 291

Query: 303 LAISSDASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTCLLQ 362
           L IS++  E+LP CVGLGIVRGIDT +G+LYVITPVP  ++EKVDL LQG+IQ+PTCLL+
Sbjct: 292 LGISTEVFEDLPSCVGLGIVRGIDTERGILYVITPVPENLVEKVDLLLQGYIQLPTCLLE 351

Query: 363 V 363
           V
Sbjct: 352 V 352

Polynucleotide 5'-kinase involved in rRNA processing.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: -

>sp|E1BPN0|NOL9_BOVIN Polynucleotide 5'-hydroxyl-kinase NOL9 OS=Bos taurus GN=NOL9 PE=3 SV=1

 Score =  149 bits (375), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 181/374 (48%), Gaps = 71/374 (18%)

Query: 38  PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVD--TLT 95
           P+  +CG ++ GK+TF+R+L+N LL     V YL+ D+GQ EFT PG +SL  +    L 
Sbjct: 292 PVILVCGCQDIGKSTFNRYLINQLLNSVSCVDYLECDLGQTEFTPPGCISLLNITEPVLG 351

Query: 96  PDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPL 155
           P  T    +TP++  ++G  S K +   Y++ I  ++  Y++E               PL
Sbjct: 352 PPFTHQ--RTPQKMVYYGKTSCKNNFENYIEVIKYVFSSYKRES--------------PL 395

Query: 156 IVNTPGWVKGIGYDILVDMLKYITPTHVVKINISFEKKNLPAGAFWLDNFEGV------- 208
           I+NT GWV   G  +L+D+++ ++P+HVV+ +    K        ++D+ +G+       
Sbjct: 396 IINTMGWVADQGLLLLIDLIRLLSPSHVVQFSSDRSKYMPDLTPDFVDDMDGLYTRRRSR 455

Query: 209 ----DVNLIE----------------ISSARQDSFNRSVLV--------QKDARLLRDLR 240
                 +L E                +S+  +  F +S  V        +   R+LR+L 
Sbjct: 456 VRNRGFHLPEFAESLEFADEEKEGPVMSTGYKLMFVKSEFVTGKTSRNRESHNRILRELA 515

Query: 241 IMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATI 300
           ++ Y  Q  P       + +  +AL    PYQVP +++ +R ++  V  + I Y++NA+ 
Sbjct: 516 VLGYLSQLQPP------VPKPLRALHGLTPYQVPFNAVALRIIHADVAPTHILYAVNASW 569

Query: 301 VGLAISSD------------ASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDL 348
           VGL    D            A   +  CVG GI RGID  K L +++TPVPP  L  V+ 
Sbjct: 570 VGLCKILDDVRGYASGPILLAQSPICDCVGFGICRGIDMEKKLYHILTPVPPEELRHVNC 629

Query: 349 FLQGFIQIPTCLLQ 362
            L G + IP C+L+
Sbjct: 630 LLVGAVNIPQCVLK 643

Polynucleotide 5'-kinase involved in rRNA processing. The kinase activity is required for the processing of the 32S precursor into 5.8S and 28S rRNAs, more specifically for the generation of the major 5.8S(S) form. In vitro, has both DNA and RNA 5'-kinase activities. Probably binds RNA.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q3TZX8|NOL9_MOUSE Polynucleotide 5'-hydroxyl-kinase NOL9 OS=Mus musculus GN=Nol9 PE=1 SV=1

 Score =  149 bits (375), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 178/375 (47%), Gaps = 72/375 (19%)

Query: 38  PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDT--LT 95
           P+  +CGA + GK+TF+R L+N LL     V YL+ D+GQ EFT PG ++L  +    L 
Sbjct: 316 PVILLCGACDIGKSTFNRILINQLLNSIPGVDYLECDLGQTEFTPPGCVALLTITEPLLG 375

Query: 96  PDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPL 155
           P  T    + P+R  ++G ++   D   Y+  +  ++  Y++E+              PL
Sbjct: 376 PPYTHQ--RKPQRMVYYGKMNCYNDYENYIDIVKYVFRDYKREF--------------PL 419

Query: 156 IVNTPGWVKGIGYDILVDMLKYITPTHVVKI---------NISFEKKNLPAGAFW---LD 203
           I+NT GWV   G  +LVD+++ ++P +VV++          ++ E   L  G +    + 
Sbjct: 420 IINTMGWVSDNGLRLLVDLIRVLSPNYVVQLYSDRCKFTPTLTSEYVELTDGLYTKSKIK 479

Query: 204 NFEGVDV----NLIEISSARQDS-----FNRSVLVQ---------------KDARLLRDL 239
            + G ++    + +E +   ++S     F   VL+                K  R+ RDL
Sbjct: 480 RYRGFEIPEFGDNLEFTYEEKESSPLPVFTGHVLLSVHSEFLSSKNEKNRAKYNRIFRDL 539

Query: 240 RIMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNAT 299
            ++ Y  Q       +  + E    L +  PYQVP S++ IR L+  V  + I Y++NA+
Sbjct: 540 AVLGYLSQL------MLPVPESLSPLHSLTPYQVPFSAVAIRVLHADVAPTHILYAVNAS 593

Query: 300 IVGLAISSD------------ASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVD 347
            VGL    D            A   +  C+G GI RGID  K   +++TP+PP  L+ V+
Sbjct: 594 WVGLCRIVDDMKGYTRGPILLAQNPICDCLGFGICRGIDMDKRTYHILTPLPPEELKTVN 653

Query: 348 LFLQGFIQIPTCLLQ 362
             L G I IP C+ Q
Sbjct: 654 CLLVGSISIPHCIFQ 668

Polynucleotide 5'-kinase involved in rRNA processing. The kinase activity is required for the processing of the 32S precursor into 5.8S and 28S rRNAs, more specifically for the generation of the major 5.8S(S) form. In vitro, has both DNA and RNA 5'-kinase activities. Probably binds RNA.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q5SY16|NOL9_HUMAN Polynucleotide 5'-hydroxyl-kinase NOL9 OS=Homo sapiens GN=NOL9 PE=1 SV=1

 Score =  147 bits (370), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 181/374 (48%), Gaps = 71/374 (18%)

Query: 38  PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVD--TLT 95
           P+  +CG+++ GK+TF+R+L+N LL     V YL+ D+GQ EFT PG +SL  +    L 
Sbjct: 300 PVILVCGSQDVGKSTFNRYLINHLLNSLPCVDYLECDLGQTEFTPPGCISLLNITEPVLG 359

Query: 96  PDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPL 155
           P  T   L+TP++  ++G  S K +   Y+  +  ++  Y++E               PL
Sbjct: 360 PPFTH--LRTPQKMVYYGKPSCKNNYENYIDIVKYVFSAYKRES--------------PL 403

Query: 156 IVNTPGWVKGIGYDILVDMLKYITPTHVVKINISFEKKNLPAGAFWLDNFEGVD------ 209
           IVNT GWV   G  +L+D+++ ++P+HVV+      K        ++D+ +G+       
Sbjct: 404 IVNTMGWVSDQGLLLLIDLIRLLSPSHVVQFRSDHSKYMPDLTPQYVDDMDGLYTKSKTK 463

Query: 210 -----------VNLIEISSARQDS---FNRSVLV---------------QKDARLLRDLR 240
                       + +E +   ++S   F    L+               +   ++LRDL 
Sbjct: 464 MRNRRFRLAAFADALEFADEEKESPVEFTGHKLIGVYTDFAFRITPRNRESHNKILRDLS 523

Query: 241 IMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATI 300
           I++Y  Q  P      + K L+  L +  PYQVP +++ +R  +  V  + I Y++NA+ 
Sbjct: 524 ILSYLSQLQPP-----MPKPLS-PLHSLTPYQVPFNAVALRITHSDVAPTHILYAVNASW 577

Query: 301 VGLAISSD------------ASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDL 348
           VGL    D            A   +  C+G GI RGID  K L +++TPVPP  L  V+ 
Sbjct: 578 VGLCKIQDDVRGYTNGPILLAQTPICDCLGFGICRGIDMEKRLYHILTPVPPEELRTVNC 637

Query: 349 FLQGFIQIPTCLLQ 362
            L G I IP C+L+
Sbjct: 638 LLVGAIAIPHCVLK 651

Polynucleotide 5'-kinase involved in rRNA processing. The kinase activity is required for the processing of the 32S precursor into 5.8S and 28S rRNAs, more specifically for the generation of the major 5.8S(S) form. In vitro, has both DNA and RNA 5'-kinase activities. Probably binds RNA.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q9UU96|GRC3_SCHPO Polynucleotide 5'-hydroxyl-kinase grc3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=grc3 PE=1 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 165/363 (45%), Gaps = 49/363 (13%)

Query: 18  PREWSDAADSIAYDSNTSP--PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75
           P  W   ++ + + ++ S    P   +CG K  GK++FSR++ N LLQ+Y+ +AYLD D 
Sbjct: 310 PESWCSFSNQLLFSTSKSDYVVPRLMVCGPKGSGKSSFSRYITNRLLQQYRHIAYLDLDP 369

Query: 76  GQPEFTAPGFLSLTVVDT--LTPDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYD 133
           GQPE    G +SL  +++    P        T       GD+S ++DP  Y+  +T L+ 
Sbjct: 370 GQPEVVPSGHISLYYINSPLQGPVFARMLFPTYMLRLHLGDISPQKDPDHYIACVTRLFA 429

Query: 134 YYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKINIS---- 189
            Y+   Y+FN+ E   +  +PLI+N PGW++G G ++L  ++    PT VV ++      
Sbjct: 430 EYKD--YIFNQ-EISQKEIIPLIINCPGWIRGGGAELLSSIVDICQPTEVVYMSREDMKS 486

Query: 190 --FEKKNLPAGAFWLDNF----EGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMA 243
              EKK++     ++ +F    +   + L+E +       N + +   D R+L  L  + 
Sbjct: 487 SHREKKSIYQHKEYMPDFLSSRDEFQLTLLESTWQYLPDPNVNKVTSADNRMLGLLSYL- 545

Query: 244 YFRQCFPSDLNITIIKELAQALA-AYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATIVG 302
           YF  C     + T      Q +A A+      I ++ I      V  +++  ++N T++ 
Sbjct: 546 YF-NCNLQRWDFTTSLTACQPIATAFKGSSKGIDAVNIIGEPLNV--NDVAKTINGTLMA 602

Query: 303 LAISSDAS-------------ENLP--------------HCVGLGIVRGIDTLKGLLYVI 335
           L     AS             E +P              HC+GL ++R ID  +   + +
Sbjct: 603 LYACDTASLDNSNTQRIVSSPEGIPLIINDGLPLDPNTSHCLGLIVLRTIDLKRNEFHFV 662

Query: 336 TPV 338
            P+
Sbjct: 663 GPL 665

Polynucleotide 5'-kinase involved in rRNA processing.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q54Z27|NOL9_DICDI Polynucleotide 5'-hydroxyl-kinase nol9 OS=Dictyostelium discoideum GN=nol9 PE=3 SV=1

 Score =  106 bits (265), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 100/177 (56%), Gaps = 19/177 (10%)

Query: 17  IPREWSDAADS-IAYDSNTSPPPIAFI-CGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74
           IP EW +  ++   Y+ + +   ++ + CG +N GK+TF+R L+N LL++Y  + +++TD
Sbjct: 248 IPNEWLNLINTQFLYNDHCNNNGLSILTCGERNVGKSTFNRILINKLLKKYTHIIFIETD 307

Query: 75  VGQPEFTAPGFLSLTVVDT--LTPDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLY 132
            GQ EFT  G +S+ ++++  L P  T  C   P + YFFGD S K +P  +L     L 
Sbjct: 308 TGQTEFTPSGIMSIDIINSPLLGPPFT-HCKNNPLKSYFFGDTSPKNNPEYFLNLSFQLI 366

Query: 133 D---YYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKI 186
           D     +++Y             +P+I+NT GW+K +G  +  +++KY  PT +V++
Sbjct: 367 DCCNLIKQQY-----------PNIPIILNTNGWLKSLGLHLTQEIIKYFKPTSIVQL 412

Polynucleotide 5'-kinase involved in rRNA processing.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|P0CM78|GRC3_CRYNJ Polynucleotide 5'-hydroxyl-kinase GRC3 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=GRC3 PE=3 SV=1

 Score =  106 bits (264), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 175/395 (44%), Gaps = 61/395 (15%)

Query: 18  PREWSDA-ADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76
           P  WS A +   + D N   P +  + G K  GK+TF+R L+N LL+R++KVA+L+ D+G
Sbjct: 304 PPSWSHAISSLSSSDVNLQTPFVGLVKGPKRSGKSTFARALLNNLLRRFRKVAWLECDLG 363

Query: 77  QPEFTAPGFLSLTVVD--TLTPDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDY 134
           Q EF +   + L ++D   L P  T P L  P R ++ G  +    P  YL  I  L ++
Sbjct: 364 QGEFGSGAVVGLWILDKPALGPPFTHPLL--PSRSHYLGTYTPLTCPDEYLVAIRHLIEH 421

Query: 135 YRKEYYMFNESESPG-------RTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKIN 187
           Y+ E    +E  +          T +PL++NT GW+KG+G ++L  +     PT V    
Sbjct: 422 YKYELQYTSEYSALHTTVHDKISTHVPLVINTQGWMKGLGEELLNVIESMAQPTRV---- 477

Query: 188 ISFEKKN--LPAGAFWLDNFEGVDVNL-----------IEISSARQDSFNRSVLVQKDAR 234
            SFE ++  + +G  W          L           +E    +  S   + +    AR
Sbjct: 478 FSFESQSEEVYSGQGWTSTPPWQATQLPYDPAYPTTEPVETEVTQTYSLETAPVSALQAR 537

Query: 235 L----LRDLRIMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIK-IRHLYC---- 285
                LR L  + YF        ++ +  +++  L    P++V +   K +  +Y     
Sbjct: 538 YTPADLRVLSAITYFHASLHPTQSVPVTWDISSPLVCTIPWEVELGIGKALEKVYLIGEG 597

Query: 286 --QVPRSEIFYSLNATIVGLAISSDASENLP---------------HCVGLGIVRGIDTL 328
              V   ++  +LN  IV LA    + E+ P               + +GL ++R + + 
Sbjct: 598 SEGVLEEDLPIALNGAIVALAEMLGSYEDEPTVYEQGRSPPPTDLVNILGLAVIRSLSSG 657

Query: 329 KGL-----LYVITPVPPGILEKVDLFLQ-GFIQIP 357
             +     L ++TP+PP  L +  + ++ G +++P
Sbjct: 658 NSVNPGLKLQLLTPLPPSYLSRARILIKSGALELP 692

Polynucleotide 5'-kinase involved in rRNA processing.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|P0CM79|GRC3_CRYNB Polynucleotide 5'-hydroxyl-kinase GRC3 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=GRC3 PE=3 SV=1

 Score =  106 bits (264), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 175/395 (44%), Gaps = 61/395 (15%)

Query: 18  PREWSDA-ADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76
           P  WS A +   + D N   P +  + G K  GK+TF+R L+N LL+R++KVA+L+ D+G
Sbjct: 304 PPSWSHAISSLSSSDVNLQTPFVGLVKGPKRSGKSTFARALLNNLLRRFRKVAWLECDLG 363

Query: 77  QPEFTAPGFLSLTVVD--TLTPDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDY 134
           Q EF +   + L ++D   L P  T P L  P R ++ G  +    P  YL  I  L ++
Sbjct: 364 QGEFGSGAVVGLWILDKPALGPPFTHPLL--PSRSHYLGTYTPLTCPDEYLVAIRHLIEH 421

Query: 135 YRKEYYMFNESESPG-------RTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKIN 187
           Y+ E    +E  +          T +PL++NT GW+KG+G ++L  +     PT V    
Sbjct: 422 YKYELQYTSEYSALHTTVHDKISTHVPLVINTQGWMKGLGEELLNVIESMAQPTRV---- 477

Query: 188 ISFEKKN--LPAGAFWLDNFEGVDVNL-----------IEISSARQDSFNRSVLVQKDAR 234
            SFE ++  + +G  W          L           +E    +  S   + +    AR
Sbjct: 478 FSFESQSEEVYSGQGWTSTPPWQATQLPYDPAYPTTEPVETEVTQTYSLETAPVSALQAR 537

Query: 235 L----LRDLRIMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIK-IRHLYC---- 285
                LR L  + YF        ++ +  +++  L    P++V +   K +  +Y     
Sbjct: 538 YTPADLRVLSAITYFHASLHPTQSVPVTWDISSPLVCTIPWEVELGIGKALEKVYLIGEG 597

Query: 286 --QVPRSEIFYSLNATIVGLAISSDASENLP---------------HCVGLGIVRGIDTL 328
              V   ++  +LN  IV LA    + E+ P               + +GL ++R + + 
Sbjct: 598 SEGVLEEDLPIALNGAIVALAEMLGSYEDEPTVYEQGRSPPPTDLVNILGLAVIRSLSSG 657

Query: 329 KGL-----LYVITPVPPGILEKVDLFLQ-GFIQIP 357
             +     L ++TP+PP  L +  + ++ G +++P
Sbjct: 658 NSVNPGLKLQLLTPLPPSYLSRARILIKSGALELP 692

Polynucleotide 5'-kinase involved in rRNA processing.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q4IR18|GRC3_GIBZE Polynucleotide 5'-hydroxyl-kinase GRC3 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=GRC3 PE=3 SV=2

 Score =  105 bits (262), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 153/384 (39%), Gaps = 90/384 (23%)

Query: 18  PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLL------QRYKKVAYL 71
           P EW+    S+   S   P     ICG K+ GK+TFSR  +N LL      Q  + V  L
Sbjct: 259 PPEWNKKLSSLVATSRKKPSLSTLICGPKSAGKSTFSRLFLNGLLTDRSQKQGARSVVIL 318

Query: 72  DTDVGQPEFTAPGFLSLTVVD--TLTPDLTIPCLK----TPKRCYFFGDVSSKRDPTAYL 125
           D D GQPE+  PG LSL  V    L    T P LK    T  R +     +   +P  YL
Sbjct: 319 DLDPGQPEYAPPGTLSLVFVTKPNLGTPFTHPSLKNSAFTVVRSHSMASATPAPNPDLYL 378

Query: 126 KYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVK 185
              T L+D Y K Y           +  PLIVNTPGW++G G D+L  +++ I P  V+ 
Sbjct: 379 ACATDLFDTYSKHY-----------SGAPLIVNTPGWIQGTGLDLLSSLIEKIKPQEVLY 427

Query: 186 INISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNR-----SVLVQKDARLLRDLR 240
           ++ +                 G D  +  + +A +  F       S    + A  LR ++
Sbjct: 428 MSEA-----------------GPDEAVNALRAATKLMFTELPSQPSEFTSRTAAHLRAMQ 470

Query: 241 IMAYFR----QCFPSDL--NITIIKELAQALAAYPPYQVPISSIKIRHL----------- 283
            M+YF         S+L    T +K  A  L++  P  V  SS K   L           
Sbjct: 471 TMSYFHLQNTALKTSNLLDTSTRLKWDASPLSSRAPLLVQYSSSKRGVLGLLSYDYQCSP 530

Query: 284 -------------YCQVPRSEIFYSLNATIVGLAISSDASENLP---------------H 315
                          ++   + F +    +    + S + EN+P                
Sbjct: 531 ELLADTVNGLVLAAVEIEDRKAFSNFPQEVAPPPLVSTSPENIPFIPNYDDVALDPRYSR 590

Query: 316 CVGLGIVRGIDTLKGLLYVITPVP 339
            +GL ++RGIDT    L ++TP+P
Sbjct: 591 TIGLVLLRGIDTKSETLQLVTPIP 614

Polynucleotide 5'-kinase involved in rRNA processing.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|A8WQV9|NOL9_CAEBR Polynucleotide 5'-hydroxyl-kinase nol-9 OS=Caenorhabditis briggsae GN=nol-9 PE=3 SV=2

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 166/386 (43%), Gaps = 73/386 (18%)

Query: 6   PQTENPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR- 64
           PQ +      ++ R  S  AD +     TS  PI    G K  GK+   R+LVN  L   
Sbjct: 156 PQDDEARLNTHLNRLNSLKADGVK----TSILPI----GHKGAGKSNLMRNLVNRCLSNG 207

Query: 65  YKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIP---CLKTPKRCYFFGDVSSKRDP 121
           Y+ V  LD D+GQ EFT  G +SLT V   +P L  P     KT    YF+GD+      
Sbjct: 208 YEHVYVLDCDIGQSEFTPNGCISLTKV--TSPLLDKPYGHQKKTFDNSYFYGDI------ 259

Query: 122 TAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPT 181
           T     I    D + + +  F     PG      IVN+ GW+   G +IL  +++ I P 
Sbjct: 260 TVNDNNIDHYMDIFERLFNKFKLISEPGSV---CIVNSMGWIVDEGAEILDGIIRVIEPD 316

Query: 182 HVVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLV-----QKD--AR 234
             V+I      ++     +    FE   V  +EI +      N SV V     QK   A 
Sbjct: 317 LCVEI-----FRDQTEARYSFKEFEKCKV--VEIFA------NNSVGVIGLPNQKKLPAP 363

Query: 235 LLRDLRIMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKI-RHLYCQVPRSEIF 293
           L R+L I  YF    P        +    + A+ PPY++   +I I   +   V    IF
Sbjct: 364 LHRELTITGYFSSLLP--------RPTIASFASVPPYRLNFRNITICLPMDLLVEDCHIF 415

Query: 294 YSLNATIVGLAISS--------DASENLP------------HCVGLGIVRGIDTLKGLLY 333
            S+N  ++ L + +        +  +++P             C+G GI+RG++  +  +Y
Sbjct: 416 SSINTQLIALCVKNPDLKTRKLNGKQDMPSLSVIDSTSPALQCIGFGIIRGVNVEERSVY 475

Query: 334 VITPVPPGILEKVDLFLQGF-IQIPT 358
           V+TPV    L++  L ++G  IQ P+
Sbjct: 476 VVTPVNLLKLQEPPLLVRGMRIQTPS 501

Polynucleotide 5'-kinase involved in rRNA processing.

Caenorhabditis briggsae (taxid: 6238)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
255540835	381	conserved hypothetical protein [Ricinus	0.962	0.950	0.782	1e-167
225456594	378	PREDICTED: polynucleotide 5'-hydroxyl-ki	0.962	0.957	0.782	1e-166
118484105	375	unknown [Populus trichocarpa]	0.952	0.954	0.770	1e-163
224121594	377	predicted protein [Populus trichocarpa]	0.952	0.949	0.765	1e-162
449469486	379	PREDICTED: polynucleotide 5'-hydroxyl-ki	0.962	0.955	0.752	1e-160
449487795	379	PREDICTED: polynucleotide 5'-hydroxyl-ki	0.962	0.955	0.75	1e-159
356513953	372	PREDICTED: polynucleotide 5'-hydroxyl-ki	0.933	0.943	0.725	1e-153
356507198	370	PREDICTED: polynucleotide 5'-hydroxyl-ki	0.933	0.948	0.711	1e-149
356519009	354	PREDICTED: polynucleotide 5'-hydroxyl-ki	0.930	0.988	0.702	1e-145
30683442	368	Pre-mRNA cleavage complex II protein fam	0.930	0.951	0.628	1e-132

>gi|255540835|ref|XP_002511482.1| conserved hypothetical protein [Ricinus communis] gi|223550597|gb|EEF52084.1| conserved hypothetical protein [Ricinus communis]

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 284/363 (78%), Positives = 322/363 (88%), Gaps = 1/363 (0%)

Query: 1   MAAYMPQTENPS-PAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVN 59
           MA+ + +TE  S P+I+IP+EWS+AA++IAYDS TSP P++ ICGAKNCGKTTFSR+L+N
Sbjct: 1   MASNILETEEASSPSIHIPQEWSEAANTIAYDSPTSPLPVSLICGAKNCGKTTFSRYLLN 60

Query: 60  VLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSSKR 119
            LLQRY++V YLDTDVGQPEFT PGF+SLTVVD LTPDLTIPCLKTP+RC+FFGDVSSKR
Sbjct: 61  TLLQRYRRVGYLDTDVGQPEFTTPGFVSLTVVDKLTPDLTIPCLKTPERCFFFGDVSSKR 120

Query: 120 DPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYIT 179
           DP+ YLKYI+TL +YYRKEY + N SES  +TELPL+VNTPGWVKG+GYDILVDM+K I 
Sbjct: 121 DPSTYLKYISTLCNYYRKEYCISNTSESTAKTELPLVVNTPGWVKGVGYDILVDMVKCIA 180

Query: 180 PTHVVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDL 239
           P+HVVKINIS E+KNLPAGAFWLD     +VNLIEI+SAR DSFNRSVLVQKDARLLRDL
Sbjct: 181 PSHVVKINISSERKNLPAGAFWLDEDFCEEVNLIEINSARHDSFNRSVLVQKDARLLRDL 240

Query: 240 RIMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNAT 299
           RIMAYFRQCF S LNIT IKELA ALA++PPYQVPISSIKIRHL+CQVP +EIFYSLNA+
Sbjct: 241 RIMAYFRQCFSSSLNITTIKELANALASHPPYQVPISSIKIRHLHCQVPHTEIFYSLNAS 300

Query: 300 IVGLAISSDASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTC 359
           IVGLA+SS+ SE LP C GLGIVRGIDT KGLLY+ITPVPP  LEKVDL LQGFIQIPTC
Sbjct: 301 IVGLAVSSEQSETLPWCSGLGIVRGIDTSKGLLYMITPVPPSSLEKVDLLLQGFIQIPTC 360

Query: 360 LLQ 362
           LLQ
Sbjct: 361 LLQ 363

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456594|ref|XP_002267234.1| PREDICTED: polynucleotide 5'-hydroxyl-kinase NOL9 [Vitis vinifera] gi|297734062|emb|CBI15309.3| unnamed protein product [Vitis vinifera]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 284/363 (78%), Positives = 316/363 (87%), Gaps = 1/363 (0%)

Query: 1   MAAYMPQTENPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNV 60
           MAA+  + E PSP IYIP EWS+AA++IAYDS TSPPP+A +CGAKNCGKTTFSRHL+N+
Sbjct: 1   MAAFS-EAEAPSPDIYIPEEWSEAAETIAYDSVTSPPPVALVCGAKNCGKTTFSRHLLNI 59

Query: 61  LLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSSKRD 120
           LLQRY+KVAYLDTDVGQ EFT PGFLSLTV+D LTPDLTIPCLKTP+RCY+FGD+SSKRD
Sbjct: 60  LLQRYQKVAYLDTDVGQTEFTPPGFLSLTVIDQLTPDLTIPCLKTPERCYYFGDISSKRD 119

Query: 121 PTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITP 180
           PTAYL YI  LYDYYR+EY M   S+ P +TELPL+VNTPGWVKGIGYDILVD+LKYI P
Sbjct: 120 PTAYLNYIFALYDYYRREYCMLKGSKKPVKTELPLVVNTPGWVKGIGYDILVDVLKYIAP 179

Query: 181 THVVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLR 240
           THVVKINIS E KNLPAGAFWLD      VNLIE+SSARQDSF RSVLVQKDA LLRDLR
Sbjct: 180 THVVKINISAEGKNLPAGAFWLDGDHKESVNLIEVSSARQDSFKRSVLVQKDAGLLRDLR 239

Query: 241 IMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATI 300
           IMAYFRQCFPS+LNIT IKELA ALA++ PY++PI SIKI+HL+CQVP +EI YSLNATI
Sbjct: 240 IMAYFRQCFPSNLNITTIKELAHALASHSPYEIPIPSIKIKHLHCQVPSTEILYSLNATI 299

Query: 301 VGLAISSDASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTCL 360
           VGLA+SS+ SENL  CVGLGIVRGIDT K LLYV+TPVP   LEKVDL L GF+QIPTCL
Sbjct: 300 VGLAVSSEDSENLSPCVGLGIVRGIDTFKRLLYVLTPVPQSTLEKVDLLLLGFVQIPTCL 359

Query: 361 LQV 363
           LQV
Sbjct: 360 LQV 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484105|gb|ABK93937.1| unknown [Populus trichocarpa]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 278/361 (77%), Positives = 313/361 (86%), Gaps = 3/361 (0%)

Query: 3   AYMPQTENPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLL 62
           A + + E  SP+IYI  EWS+AADS+AYDS TSPPPIA +CG KNCGKTTFSR+L+N+LL
Sbjct: 2   ASITEREEASPSIYISEEWSEAADSVAYDSTTSPPPIALVCGPKNCGKTTFSRYLLNILL 61

Query: 63  QRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSSKRDPT 122
           QRYK+V YLDTDVGQPEFT PGFLSLTVVD LTPDLTIPCLKTP+RC+FFGDVSSKRDPT
Sbjct: 62  QRYKRVGYLDTDVGQPEFTTPGFLSLTVVDKLTPDLTIPCLKTPERCFFFGDVSSKRDPT 121

Query: 123 AYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTH 182
           AYLK I TLYDYYRKEY    +S+SP   E+PL+VNT GWVKG+GYDILVDML++I PTH
Sbjct: 122 AYLKCIFTLYDYYRKEYC---KSDSPVENEMPLVVNTHGWVKGVGYDILVDMLRHIAPTH 178

Query: 183 VVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIM 242
           VVKIN + E+KNLP G FWLD   G  VNLI+I+S R DSFNRSVL+QKDARLLRDLRIM
Sbjct: 179 VVKINTTSERKNLPGGKFWLDEGYGGQVNLIDINSTRHDSFNRSVLIQKDARLLRDLRIM 238

Query: 243 AYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATIVG 302
           AYFRQCFPS+LNIT IK LA ALA++PPYQVPISSIKIRHL+ QVP +E+FYSLNATIVG
Sbjct: 239 AYFRQCFPSNLNITTIKGLANALASHPPYQVPISSIKIRHLHSQVPHTEVFYSLNATIVG 298

Query: 303 LAISSDASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTCLLQ 362
           LA+SS   EN+P CVGLGIVRGIDT KGLLY+I+PVPP +LEKVDL LQGFI IPTCLLQ
Sbjct: 299 LAVSSKQPENMPWCVGLGIVRGIDTFKGLLYLISPVPPILLEKVDLLLQGFIHIPTCLLQ 358

Query: 363 V 363
           V
Sbjct: 359 V 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121594|ref|XP_002318622.1| predicted protein [Populus trichocarpa] gi|222859295|gb|EEE96842.1| predicted protein [Populus trichocarpa]

 Score =  575 bits (1483), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 278/363 (76%), Positives = 313/363 (86%), Gaps = 5/363 (1%)

Query: 3   AYMPQTENPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLL 62
           A + + E  SP+IYI  EWS+AADS+AYDS TSPPPIA +CG KNCGKTTFSR+L+N+LL
Sbjct: 2   ASITEREEASPSIYISEEWSEAADSVAYDSTTSPPPIALVCGPKNCGKTTFSRYLLNILL 61

Query: 63  QRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPD--LTIPCLKTPKRCYFFGDVSSKRD 120
           QRYK+V YLDTDVGQPEFT PGFLSLTVVD LTP   LTIPCLKTP+RC+FFGDVSSKRD
Sbjct: 62  QRYKRVGYLDTDVGQPEFTTPGFLSLTVVDKLTPGIYLTIPCLKTPERCFFFGDVSSKRD 121

Query: 121 PTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITP 180
           PTAYLK I TLYDYYRKEY    +S+SP   E+PL+VNT GWVKG+GYDILVDML++I P
Sbjct: 122 PTAYLKCIFTLYDYYRKEYC---KSDSPVENEMPLVVNTHGWVKGVGYDILVDMLRHIAP 178

Query: 181 THVVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLR 240
           THVVKIN + E+KNLP G FWLD   G  VNLI+I+S R DSFNRSVL+QKDARLLRDLR
Sbjct: 179 THVVKINTTSERKNLPGGKFWLDEGYGGQVNLIDINSTRHDSFNRSVLIQKDARLLRDLR 238

Query: 241 IMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATI 300
           IMAYFRQCFPS+LNIT IKELA ALA++PPYQVPISSIKIRHL+ QVP +E+FYSLNATI
Sbjct: 239 IMAYFRQCFPSNLNITTIKELANALASHPPYQVPISSIKIRHLHSQVPHTEVFYSLNATI 298

Query: 301 VGLAISSDASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTCL 360
           VGLA+SS   EN+P CVGLGIVRGIDT KGLLY+I+PVPP +LEKVDL LQGFI IPTCL
Sbjct: 299 VGLAVSSKQPENMPWCVGLGIVRGIDTFKGLLYLISPVPPILLEKVDLLLQGFIHIPTCL 358

Query: 361 LQV 363
           LQV
Sbjct: 359 LQV 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469486|ref|XP_004152451.1| PREDICTED: polynucleotide 5'-hydroxyl-kinase NOL9-like [Cucumis sativus]

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 274/364 (75%), Positives = 307/364 (84%), Gaps = 2/364 (0%)

Query: 1   MAAYMPQTENPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNV 60
           M++++ + EN SP I+IP EWS+AA+SI +DS TSPPP+  ICGAKNCGK+TFSRHL+NV
Sbjct: 1   MSSFL-ELENSSPNIFIPEEWSEAAESIVFDSPTSPPPVVLICGAKNCGKSTFSRHLLNV 59

Query: 61  LLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSSKRD 120
            L+RYKKV YLD+DVGQPEFT PGFLSLTVVD L PDL+ PCLKTP+RC+FFGD+SSKRD
Sbjct: 60  FLRRYKKVVYLDSDVGQPEFTPPGFLSLTVVDRLIPDLSTPCLKTPERCFFFGDISSKRD 119

Query: 121 PTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITP 180
           P AYL Y  TLYDYY KEY  FN++E   + ELPLIVNTPGWVKGIGY+ILVDMLKYI P
Sbjct: 120 PKAYLSYANTLYDYYHKEYNSFNKTEELAKIELPLIVNTPGWVKGIGYEILVDMLKYIAP 179

Query: 181 THVVKINISFEKKNLPAGAFWLDNFEGVD-VNLIEISSARQDSFNRSVLVQKDARLLRDL 239
           +HVVKINIS E KNLPAG FWL+  E     +LIEI SARQD FNRS+LVQKD  L+RDL
Sbjct: 180 SHVVKINISAESKNLPAGEFWLEEEENYGTTSLIEIRSARQDEFNRSILVQKDTSLMRDL 239

Query: 240 RIMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNAT 299
           RIMAYFRQCFP D NIT IKELA ALA++PPYQVPISSIKIRHL+CQVP  +IFYSLNAT
Sbjct: 240 RIMAYFRQCFPRDCNITTIKELANALASHPPYQVPISSIKIRHLHCQVPSDQIFYSLNAT 299

Query: 300 IVGLAISSDASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTC 359
           IVGLA  S+ SEN   CVGLGIVRGIDT KGLLYVITPVP G LEKVDL LQGFIQIP+C
Sbjct: 300 IVGLATCSNNSENSSWCVGLGIVRGIDTFKGLLYVITPVPHGTLEKVDLLLQGFIQIPSC 359

Query: 360 LLQV 363
           LLQV
Sbjct: 360 LLQV 363

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487795|ref|XP_004157804.1| PREDICTED: polynucleotide 5'-hydroxyl-kinase NOL9-like [Cucumis sativus]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 273/364 (75%), Positives = 306/364 (84%), Gaps = 2/364 (0%)

Query: 1   MAAYMPQTENPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNV 60
           M++++ + EN SP I+IP EWS+AA+SI +DS TSPPP+  ICGAKNCGK+TFSRHL+NV
Sbjct: 1   MSSFL-ELENSSPNIFIPEEWSEAAESIVFDSPTSPPPVVLICGAKNCGKSTFSRHLLNV 59

Query: 61  LLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSSKRD 120
            L+RYKKV YLD+DVGQPEFT PGFLSLTVVD L PDL+ PCLKTP+R +FFGD+SSKRD
Sbjct: 60  FLRRYKKVVYLDSDVGQPEFTPPGFLSLTVVDRLIPDLSTPCLKTPERMFFFGDISSKRD 119

Query: 121 PTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITP 180
           P AYL Y  TLYDYY KEY  FN++E   + ELPLIVNTPGWVKGIGY+ILVDMLKYI P
Sbjct: 120 PKAYLSYANTLYDYYHKEYNSFNKTEELAKIELPLIVNTPGWVKGIGYEILVDMLKYIAP 179

Query: 181 THVVKINISFEKKNLPAGAFWLDNFEGVD-VNLIEISSARQDSFNRSVLVQKDARLLRDL 239
           +HVVKINIS E KNLPAG FWL+  E     +LIEI SARQD FNRS+LVQKD  L+RDL
Sbjct: 180 SHVVKINISAESKNLPAGEFWLEEEENYGTTSLIEIRSARQDEFNRSILVQKDTSLMRDL 239

Query: 240 RIMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNAT 299
           RIMAYFRQCFP D NIT IKELA ALA++PPYQVPISSIKIRHL+CQVP  +IFYSLNAT
Sbjct: 240 RIMAYFRQCFPRDCNITTIKELANALASHPPYQVPISSIKIRHLHCQVPSDQIFYSLNAT 299

Query: 300 IVGLAISSDASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTC 359
           IVGLA  S+ SEN   CVGLGIVRGIDT KGLLYVITPVP G LEKVDL LQGFIQIP+C
Sbjct: 300 IVGLATCSNNSENSSWCVGLGIVRGIDTFKGLLYVITPVPHGTLEKVDLLLQGFIQIPSC 359

Query: 360 LLQV 363
           LLQV
Sbjct: 360 LLQV 363

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513953|ref|XP_003525672.1| PREDICTED: polynucleotide 5'-hydroxyl-kinase NOL9-like [Glycine max]

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 257/354 (72%), Positives = 307/354 (86%), Gaps = 3/354 (0%)

Query: 10  NPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA 69
           +PSP IYIP +WS+AA+SIA+   +S PPIA ICGAKNCGKTTFSR+L+NVLL +Y KVA
Sbjct: 4   SPSPDIYIPEQWSEAAESIAH---SSMPPIALICGAKNCGKTTFSRYLLNVLLHKYTKVA 60

Query: 70  YLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYIT 129
           YLDTDVGQPEFT P FLSLT+V  +TPDLT+PCLKTP+RC FFGDVSSKRDP+ YL Y+ 
Sbjct: 61  YLDTDVGQPEFTPPAFLSLTIVHKVTPDLTVPCLKTPERCLFFGDVSSKRDPSTYLSYVF 120

Query: 130 TLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKINIS 189
            +YDYY+K+Y ++ + E+P + +LPLIVNTPGWVKG+GYD+LVDMLKYI+PTHVVKI+I+
Sbjct: 121 AIYDYYQKKYCIYEKGENPCKVKLPLIVNTPGWVKGVGYDVLVDMLKYISPTHVVKISIA 180

Query: 190 FEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQCF 249
            EKKNLPAG FWLD      +NLIEI+SA QDS NRS+LVQKDARLLRDLRIMAYF+QCF
Sbjct: 181 SEKKNLPAGEFWLDGEHDETINLIEINSAHQDSLNRSLLVQKDARLLRDLRIMAYFKQCF 240

Query: 250 PSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATIVGLAISSDA 309
            SD NI+ IKELA ALA++ PY+VPI+SIKIRHL+C+VP SEIF+SLNATIVGLA+ S+ 
Sbjct: 241 SSDSNISTIKELAHALASHCPYEVPIASIKIRHLHCEVPSSEIFFSLNATIVGLAVDSEG 300

Query: 310 SENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTCLLQV 363
            ENLP C+GLGIVRGIDT+KG+LYVITPVP   LEKV++ LQG+IQIP+CLLQV
Sbjct: 301 PENLPWCLGLGIVRGIDTVKGVLYVITPVPHNSLEKVNVLLQGYIQIPSCLLQV 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507198|ref|XP_003522357.1| PREDICTED: polynucleotide 5'-hydroxyl-kinase NOL9-like [Glycine max]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/354 (71%), Positives = 298/354 (84%), Gaps = 3/354 (0%)

Query: 10  NPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA 69
           +PSP I IP +W +A +SIA+ S     PIA ICGAKNCGKTTFSR+L+N+LL +Y KVA
Sbjct: 4   SPSPDICIPEQWLEATESIAHSSML---PIALICGAKNCGKTTFSRYLLNILLNKYTKVA 60

Query: 70  YLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYIT 129
           YLDTDVGQPEFT P FLSLT+V  +TPDLT+PCLKTP+RC FFGDVS KRDP+ YL Y+ 
Sbjct: 61  YLDTDVGQPEFTPPAFLSLTIVHKVTPDLTVPCLKTPERCLFFGDVSCKRDPSTYLSYVF 120

Query: 130 TLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKINIS 189
            +Y++YRKEY + ++ E P + E+PLIVNTPGWVKG+GYD+LVDMLKYI PTHVVKI+IS
Sbjct: 121 AIYNHYRKEYCISDKGEYPHKIEVPLIVNTPGWVKGVGYDVLVDMLKYICPTHVVKISIS 180

Query: 190 FEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQCF 249
            EKKNLPAG FW D      +N+IEI+SARQDS NRSVLVQKDARLLRDLRIMAYFRQCF
Sbjct: 181 SEKKNLPAGEFWSDGEHDETINIIEINSARQDSLNRSVLVQKDARLLRDLRIMAYFRQCF 240

Query: 250 PSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATIVGLAISSDA 309
            S+ NI+ IKELA AL ++ PY+VPI+SIKIRHL+C+VP SEIFYSLNAT+VGLA+ SD 
Sbjct: 241 SSESNISTIKELAHALTSHCPYEVPIASIKIRHLHCEVPSSEIFYSLNATVVGLAVDSDG 300

Query: 310 SENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTCLLQV 363
            ENLP C+GLGIVRGID++KG+LYVITPVP   LEKV+L LQG+IQIP+CLLQV
Sbjct: 301 PENLPWCLGLGIVRGIDSVKGVLYVITPVPNSSLEKVNLLLQGYIQIPSCLLQV 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519009|ref|XP_003528167.1| PREDICTED: polynucleotide 5'-hydroxyl-kinase NOL9-like [Glycine max]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 248/353 (70%), Positives = 292/353 (82%), Gaps = 3/353 (0%)

Query: 10  NPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA 69
           +PSP I IP +W +A +SIA   N+S PPI  ICGAKNC KTTFSR+L+NVLL +Y KVA
Sbjct: 4   SPSPDINIPEQWLEATESIA---NSSMPPITLICGAKNCAKTTFSRYLLNVLLNKYTKVA 60

Query: 70  YLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYIT 129
           YLDTDVGQPEFT P FLSLT+V  +T DLT+PCLKTP+RC FFGDVS KRDP+ YL Y+ 
Sbjct: 61  YLDTDVGQPEFTPPAFLSLTIVHKVTSDLTVPCLKTPERCLFFGDVSCKRDPSTYLSYVF 120

Query: 130 TLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKINIS 189
            +Y+YYRKEY + ++ E P + E+PLIVNTPGWVKGIGYD+LVDMLKYI PTHVVKI+IS
Sbjct: 121 AIYNYYRKEYCISDKGEYPHKIEVPLIVNTPGWVKGIGYDVLVDMLKYICPTHVVKISIS 180

Query: 190 FEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQCF 249
            EKKNLPAG FW D      +NLIEI+SA QDS  RSVLVQ DARLLRDLRI+ YF+QCF
Sbjct: 181 SEKKNLPAGEFWSDGEHDETINLIEINSAHQDSLTRSVLVQIDARLLRDLRILTYFKQCF 240

Query: 250 PSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATIVGLAISSDA 309
            SD NI+ IKELA ALA++ PY+VPI+SIKI+HL+C+VP SEIFYSLNAT+VGLA+ S  
Sbjct: 241 SSDSNISTIKELAHALASHCPYEVPIASIKIQHLHCEVPSSEIFYSLNATVVGLAVDSHG 300

Query: 310 SENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTCLLQ 362
            ENLP C+GLGIVRGIDT+KG+LYVITPVP   LE+V+L LQG+IQIP+CLLQ
Sbjct: 301 PENLPWCLGLGIVRGIDTVKGVLYVITPVPHSSLERVNLLLQGYIQIPSCLLQ 353

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30683442|ref|NP_850805.1| Pre-mRNA cleavage complex II protein family [Arabidopsis thaliana] gi|42573337|ref|NP_974765.1| Pre-mRNA cleavage complex II protein family [Arabidopsis thaliana] gi|75161516|sp|Q8VYP6.1|NOL9_ARATH RecName: Full=Polynucleotide 5'-hydroxyl-kinase NOL9; AltName: Full=Nucleolar protein 9 homolog gi|17979299|gb|AAL49875.1| unknown protein [Arabidopsis thaliana] gi|20465981|gb|AAM20212.1| unknown protein [Arabidopsis thaliana] gi|332004238|gb|AED91621.1| Pre-mRNA cleavage complex II protein family [Arabidopsis thaliana] gi|332004239|gb|AED91622.1| Pre-mRNA cleavage complex II protein family [Arabidopsis thaliana]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/361 (62%), Positives = 290/361 (80%), Gaps = 11/361 (3%)

Query: 5   MPQTENPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR 64
           M + EN  P  +IP EWS+AA S++   ++  P IA +CG KN GK+TFSR+LV VLLQR
Sbjct: 1   MSEAENKLP--FIPEEWSNAASSVS--CSSLQPVIALVCGPKNSGKSTFSRNLVEVLLQR 56

Query: 65  YKKVAYLDTDVGQPEFTAPGFLSLTVVDT--LTPDLTIPCLKTPKRCYFFGDVSSKRDPT 122
           YK+VAYLDTDVGQPEFTAPGFLSLT+VD   L  D T+PC+KTP+RC+F+GDVSSKRDP 
Sbjct: 57  YKRVAYLDTDVGQPEFTAPGFLSLTIVDKSILESDWTVPCVKTPERCFFYGDVSSKRDPK 116

Query: 123 AYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTH 182
           AYL+Y+ TL+DYY+  +   +E+    +TELPL++NTPGWVKGIGY++LVD+L+Y++P+H
Sbjct: 117 AYLRYVYTLFDYYQLHFCKSSEN----KTELPLVINTPGWVKGIGYELLVDVLRYVSPSH 172

Query: 183 VVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIM 242
           VVKINIS   KNLPAG FWLD  +    +LIEI SA QD +N+S+L+ KDARL+RD+RI+
Sbjct: 173 VVKINISAYNKNLPAGLFWLDGNDDETAHLIEIQSAYQDRYNQSILIHKDARLMRDMRII 232

Query: 243 AYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATIVG 302
           AYFRQCF     +  IKEL   LA++ PY+VPISS+ I HL+CQ+P SE++YSLNA+IVG
Sbjct: 233 AYFRQCFKGK-EVNTIKELTHELASHIPYEVPISSLTINHLHCQIPSSEVYYSLNASIVG 291

Query: 303 LAISSDASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTCLLQ 362
           L IS++  E+LP CVGLGIVRGIDT +G+LYVITPVP  ++EKVDL LQG+IQ+PTCLL+
Sbjct: 292 LGISTEVFEDLPSCVGLGIVRGIDTERGILYVITPVPENLVEKVDLLLQGYIQLPTCLLE 351

Query: 363 V 363
           V
Sbjct: 352 V 352

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
TAIR|locus:2183830	368	AT5G11010 [Arabidopsis thalian	0.930	0.951	0.606	4.2e-118
UNIPROTKB|E1BPN0	694	NOL9 "Polynucleotide 5'-hydrox	0.414	0.224	0.302	9.5e-33
UNIPROTKB|Q5SY16	702	NOL9 "Polynucleotide 5'-hydrox	0.414	0.222	0.337	3.2e-32
UNIPROTKB|E2R0I7	520	NOL9 "Uncharacterized protein"	0.414	0.3	0.302	9.4e-32
UNIPROTKB|I3LBV6	694	NOL9 "Uncharacterized protein"	0.414	0.224	0.308	4.2e-31
MGI|MGI:1921285	714	Nol9 "nucleolar protein 9" [Mu	0.359	0.189	0.328	2.9e-29
UNIPROTKB|G3V7B0	714	Nol9 "Protein Nol9" [Rattus no	0.417	0.219	0.286	5e-29
DICTYBASE|DDB_G0277945	683	nol9 "NUC156 family protein" [	0.430	0.237	0.306	7.4e-27
POMBASE|SPCC830.03	736	grc3 "polynucleotide kinase Gr	0.760	0.388	0.262	3.1e-21
RGD|1566167	303	Nol9 "nucleolar protein 9" [Ra	0.327	0.405	0.347	3.7e-19

TAIR|locus:2183830 AT5G11010 [Arabidopsis thaliana (taxid:3702)]

 Score = 1163 (414.5 bits), Expect = 4.2e-118, P = 4.2e-118
 Identities = 219/361 (60%), Positives = 279/361 (77%)

Query:     5 MPQTENPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR 64
             M + EN  P  +IP EWS+AA S++  S    P IA +CG KN GK+TFSR+LV VLLQR
Sbjct:     1 MSEAENKLP--FIPEEWSNAASSVSCSS--LQPVIALVCGPKNSGKSTFSRNLVEVLLQR 56

Query:    65 YKKVAYLDTDVGQPEFTAPGFXXXXXXXXXXXXX--XIPCLKTPKRCYFFGDVSSKRDPT 122
             YK+VAYLDTDVGQPEFTAPGF                +PC+KTP+RC+F+GDVSSKRDP 
Sbjct:    57 YKRVAYLDTDVGQPEFTAPGFLSLTIVDKSILESDWTVPCVKTPERCFFYGDVSSKRDPK 116

Query:   123 AYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTH 182
             AYL+Y+ TL+DYY+  +   +E+    +TELPL++NTPGWVKGIGY++LVD+L+Y++P+H
Sbjct:   117 AYLRYVYTLFDYYQLHFCKSSEN----KTELPLVINTPGWVKGIGYELLVDVLRYVSPSH 172

Query:   183 VVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIM 242
             VVKINIS   KNLPAG FWLD  +    +LIEI SA QD +N+S+L+ KDARL+RD+RI+
Sbjct:   173 VVKINISAYNKNLPAGLFWLDGNDDETAHLIEIQSAYQDRYNQSILIHKDARLMRDMRII 232

Query:   243 AYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATIVG 302
             AYFRQCF     +  IKEL   LA++ PY+VPISS+ I HL+CQ+P SE++YSLNA+IVG
Sbjct:   233 AYFRQCFKGK-EVNTIKELTHELASHIPYEVPISSLTINHLHCQIPSSEVYYSLNASIVG 291

Query:   303 LAISSDASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTCLLQ 362
             L IS++  E+LP CVGLGIVRGIDT +G+LYVITPVP  ++EKVDL LQG+IQ+PTCLL+
Sbjct:   292 LGISTEVFEDLPSCVGLGIVRGIDTERGILYVITPVPENLVEKVDLLLQGYIQLPTCLLE 351

Query:   363 V 363
             V
Sbjct:   352 V 352

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=IEA

UNIPROTKB|E1BPN0 NOL9 "Polynucleotide 5'-hydroxyl-kinase NOL9" [Bos taurus (taxid:9913)]

 Score = 227 (85.0 bits), Expect = 9.5e-33, Sum P(2) = 9.5e-33
 Identities = 52/172 (30%), Positives = 91/172 (52%)

Query:    38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFXXXXXXXXXXXX 97
             P+  +CG ++ GK+TF+R+L+N LL     V YL+ D+GQ EFT PG             
Sbjct:   292 PVILVCGCQDIGKSTFNRYLINQLLNSVSCVDYLECDLGQTEFTPPGCISLLNITEPVLG 351

Query:    98 XXIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIV 157
                   +TP++  ++G  S K +   Y++ I  ++  Y++E               PLI+
Sbjct:   352 PPFTHQRTPQKMVYYGKTSCKNNFENYIEVIKYVFSSYKRES--------------PLII 397

Query:   158 NTPGWVKGIGYDILVDMLKYITPTHVVKINISFEKKNLP-AGAFWLDNFEGV 208
             NT GWV   G  +L+D+++ ++P+HVV+ + S   K +P     ++D+ +G+
Sbjct:   398 NTMGWVADQGLLLLIDLIRLLSPSHVVQFS-SDRSKYMPDLTPDFVDDMDGL 448

GO:0000460 "maturation of 5.8S rRNA" evidence=ISS

GO:0051731 "polynucleotide 5'-hydroxyl-kinase activity" evidence=ISS

GO:0005730 "nucleolus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q5SY16 NOL9 "Polynucleotide 5'-hydroxyl-kinase NOL9" [Homo sapiens (taxid:9606)]

 Score = 231 (86.4 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
 Identities = 58/172 (33%), Positives = 93/172 (54%)

Query:    38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFXXXXXXXXXXXX 97
             P+  +CG+++ GK+TF+R+L+N LL     V YL+ D+GQ EFT PG             
Sbjct:   300 PVILVCGSQDVGKSTFNRYLINHLLNSLPCVDYLECDLGQTEFTPPGCISLLNITEPVLG 359

Query:    98 XXIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIV 157
                  L+TP++  ++G  S K +   Y  YI    D  +   Y+F    S  + E PLIV
Sbjct:   360 PPFTHLRTPQKMVYYGKPSCKNN---YENYI----DIVK---YVF----SAYKRESPLIV 405

Query:   158 NTPGWVKGIGYDILVDMLKYITPTHVVKINISFEKKNLP-AGAFWLDNFEGV 208
             NT GWV   G  +L+D+++ ++P+HVV+   S   K +P     ++D+ +G+
Sbjct:   406 NTMGWVSDQGLLLLIDLIRLLSPSHVVQFR-SDHSKYMPDLTPQYVDDMDGL 456

GO:0003723 "RNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=TAS

GO:0000460 "maturation of 5.8S rRNA" evidence=IMP

GO:0051731 "polynucleotide 5'-hydroxyl-kinase activity" evidence=IDA

GO:0005730 "nucleolus" evidence=TAS

UNIPROTKB|E2R0I7 NOL9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 229 (85.7 bits), Expect = 9.4e-32, Sum P(2) = 9.4e-32
 Identities = 52/172 (30%), Positives = 92/172 (53%)

Query:    38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFXXXXXXXXXXXX 97
             P+  +CG+++ GK+TF+R+L+N LL     + YL+ D+GQ EFT PG             
Sbjct:   118 PVILVCGSQDVGKSTFNRYLINQLLNSISCIDYLECDLGQTEFTPPGCISLLNITEPILG 177

Query:    98 XXIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIV 157
                   +TP++  ++G  S K +   Y++ I  ++  Y++E               PLIV
Sbjct:   178 PPFTHQRTPQKMVYYGKPSCKNNYENYIEIIKYVFSSYKRES--------------PLIV 223

Query:   158 NTPGWVKGIGYDILVDMLKYITPTHVVKINISFEKKNLP-AGAFWLDNFEGV 208
             NT GWV   G  +L+D+++ ++P+HVV+ + S   K +P     ++D+ +G+
Sbjct:   224 NTMGWVSDKGLLLLIDLIRLLSPSHVVQFS-SGRSKYMPNLTPDYVDDMDGL 274

GO:0051731 "polynucleotide 5'-hydroxyl-kinase activity" evidence=IEA

GO:0000460 "maturation of 5.8S rRNA" evidence=IEA

UNIPROTKB|I3LBV6 NOL9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 224 (83.9 bits), Expect = 4.2e-31, Sum P(2) = 4.2e-31
 Identities = 53/172 (30%), Positives = 91/172 (52%)

Query:    38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFXXXXXXXXXXXX 97
             P+  +CG+++ GK+TF R+L+N LL     + YL+ D+GQ EFT PG             
Sbjct:   292 PVILVCGSQDVGKSTFIRYLMNQLLNSIPCIDYLECDLGQTEFTPPGCVSLLNITEPVLG 351

Query:    98 XXIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIV 157
                   +TP++  ++G  S K +   Y++ I  ++  Y++E               PLIV
Sbjct:   352 PPFTHQRTPQKMVYYGKTSCKDNFENYIEIIKYVFSSYKRE--------------APLIV 397

Query:   158 NTPGWVKGIGYDILVDMLKYITPTHVVKINISFEKKNLP-AGAFWLDNFEGV 208
             NT GWV   G  +LVD+++ ++P+HVV+ + S   K +P     ++D+ +G+
Sbjct:   398 NTMGWVADKGLLLLVDLIRLLSPSHVVQFSSS-RSKYMPNLTPDYVDDMDGL 448

GO:0051731 "polynucleotide 5'-hydroxyl-kinase activity" evidence=IEA

GO:0000460 "maturation of 5.8S rRNA" evidence=IEA

MGI|MGI:1921285 Nol9 "nucleolar protein 9" [Mus musculus (taxid:10090)]

 Score = 207 (77.9 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
 Identities = 49/149 (32%), Positives = 77/149 (51%)

Query:    38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFXXXXXXXXXXXX 97
             P+  +CGA + GK+TF+R L+N LL     V YL+ D+GQ EFT PG             
Sbjct:   316 PVILLCGACDIGKSTFNRILINQLLNSIPGVDYLECDLGQTEFTPPGCVALLTITEPLLG 375

Query:    98 XXIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIV 157
                   + P+R  ++G ++   D   Y  YI  +  Y  ++Y          + E PLI+
Sbjct:   376 PPYTHQRKPQRMVYYGKMNCYND---YENYID-IVKYVFRDY----------KREFPLII 421

Query:   158 NTPGWVKGIGYDILVDMLKYITPTHVVKI 186
             NT GWV   G  +LVD+++ ++P +VV++
Sbjct:   422 NTMGWVSDNGLRLLVDLIRVLSPNYVVQL 450

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000460 "maturation of 5.8S rRNA" evidence=ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0051731 "polynucleotide 5'-hydroxyl-kinase activity" evidence=ISO

UNIPROTKB|G3V7B0 Nol9 "Protein Nol9" [Rattus norvegicus (taxid:10116)]

 Score = 211 (79.3 bits), Expect = 5.0e-29, Sum P(2) = 5.0e-29
 Identities = 49/171 (28%), Positives = 87/171 (50%)

Query:    38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFXXXXXXXXXXXX 97
             P+  +CGA + GK+TFSR L+N LL     V YL+ D+GQ EFT PG             
Sbjct:   316 PVILLCGACDIGKSTFSRILINHLLNSIPGVDYLECDLGQTEFTPPGCISLLNITEPLLG 375

Query:    98 XXIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIV 157
                   + P++  +FG  +   +   Y++ +  ++  Y++E+              PLI+
Sbjct:   376 PPYTHQRKPQKMVYFGKTNCHNEYENYIEIVKYVFRDYKREF--------------PLII 421

Query:   158 NTPGWVKGIGYDILVDMLKYITPTHVVKINISFEKKNLPAGAFWLDNFEGV 208
             NT GWV G G  +LVD+++ ++P +VV++     +   P  + +++  +G+
Sbjct:   422 NTMGWVSGDGLLLLVDLIRVLSPNYVVQLTSDRSEPMQPLTSEFVELTDGL 472

GO:0000460 "maturation of 5.8S rRNA" evidence=IEA

GO:0051731 "polynucleotide 5'-hydroxyl-kinase activity" evidence=IEA

DICTYBASE|DDB_G0277945 nol9 "NUC156 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 242 (90.2 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
 Identities = 53/173 (30%), Positives = 89/173 (51%)

Query:    17 IPREWSDAADS-IAYDSNTSPPPIAFI-CGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74
             IP EW +  ++   Y+ + +   ++ + CG +N GK+TF+R L+N LL++Y  + +++TD
Sbjct:   248 IPNEWLNLINTQFLYNDHCNNNGLSILTCGERNVGKSTFNRILINKLLKKYTHIIFIETD 307

Query:    75 VGQPEFTAPGFXXXXXXXXXXXXXXIP-CLKTPKRCYFFGDVSSKRDPTAYLKYITTLYD 133
              GQ EFT  G                  C   P + YFFGD S K +P  +L     L D
Sbjct:   308 TGQTEFTPSGIMSIDIINSPLLGPPFTHCKNNPLKSYFFGDTSPKNNPEYFLNLSFQLID 367

Query:   134 YYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKI 186
                       + + P    +P+I+NT GW+K +G  +  +++KY  PT +V++
Sbjct:   368 CCN-----LIKQQYPN---IPIILNTNGWLKSLGLHLTQEIIKYFKPTSIVQL 412

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0051731 "polynucleotide 5'-hydroxyl-kinase activity" evidence=ISS

GO:0006364 "rRNA processing" evidence=IEA;ISS

GO:0000460 "maturation of 5.8S rRNA" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

POMBASE|SPCC830.03 grc3 "polynucleotide kinase Grc3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 255 (94.8 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
 Identities = 81/308 (26%), Positives = 141/308 (45%)

Query:    18 PREWSDAADSIAYDSNTSP--PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75
             P  W   ++ + + ++ S    P   +CG K  GK++FSR++ N LLQ+Y+ +AYLD D 
Sbjct:   310 PESWCSFSNQLLFSTSKSDYVVPRLMVCGPKGSGKSSFSRYITNRLLQQYRHIAYLDLDP 369

Query:    76 GQPEFTAPGFXXXXXXXXXXXXXXIPCLKTPKRCY--FFGDVSSKRDPTAYLKYITTLYD 133
             GQPE    G                  +  P        GD+S ++DP  Y+  +T L+ 
Sbjct:   370 GQPEVVPSGHISLYYINSPLQGPVFARMLFPTYMLRLHLGDISPQKDPDHYIACVTRLFA 429

Query:   134 YYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKINISF--- 190
              Y+   Y+FN+  S  +  +PLI+N PGW++G G ++L  ++    PT VV ++      
Sbjct:   430 EYKD--YIFNQEISQ-KEIIPLIINCPGWIRGGGAELLSSIVDICQPTEVVYMSREDMKS 486

Query:   191 ---EKKNLPAGAFWLDNF----EGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMA 243
                EKK++     ++ +F    +   + L+E +       N + +   D R+L  L  + 
Sbjct:   487 SHREKKSIYQHKEYMPDFLSSRDEFQLTLLESTWQYLPDPNVNKVTSADNRMLGLLSYL- 545

Query:   244 YFRQCFPSDLNITIIKELAQALA-AYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATIVG 302
             YF  C     + T      Q +A A+      I ++ I      V  +++  ++N T++ 
Sbjct:   546 YFN-CNLQRWDFTTSLTACQPIATAFKGSSKGIDAVNIIGEPLNV--NDVAKTINGTLMA 602

Query:   303 LAISSDAS 310
             L     AS
Sbjct:   603 LYACDTAS 610

GO:0000448 "cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IEA

GO:0006363 "termination of RNA polymerase I transcription" evidence=ISO

GO:0006364 "rRNA processing" evidence=ISO;ISS

GO:0016887 "ATPase activity" evidence=NAS

GO:0030702 "chromatin silencing at centromere" evidence=IMP

GO:0031508 "centromeric heterochromatin assembly" evidence=IMP

GO:0031618 "nuclear centromeric heterochromatin" evidence=IDA

GO:0051731 "polynucleotide 5'-hydroxyl-kinase activity" evidence=ISO;ISS

GO:0097356 "perinucleolar compartment" evidence=IDA

RGD|1566167 Nol9 "nucleolar protein 9" [Rattus norvegicus (taxid:10116)]

 Score = 183 (69.5 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
 Identities = 49/141 (34%), Positives = 73/141 (51%)

Query:   234 RLLRDLRIMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIF 293
             R+ RDL ++ Y  Q     L + + + L   L +  PYQVP +++ IR  +  V  + I 
Sbjct:   123 RIFRDLAVLGYLSQ-----LMLPVTEPLCP-LHSLTPYQVPFNAVAIRVTHADVAPTHIL 176

Query:   294 YSLNATIVGLA-ISSD-----------ASENLPHCVGLGIVRGIDTLKGLLYVITPVPPG 341
             Y++NA+ VGL  I  D           A   +  C+G GI RGID  K L +++TP+PP 
Sbjct:   177 YAMNASWVGLCKIVDDMKGYTRGPILLAQNPICDCLGFGICRGIDMDKRLYHILTPLPPE 236

Query:   342 ILEKVDLFLQGFIQIPTCLLQ 362
              L  V+  L G I IP C+ +
Sbjct:   237 ELRTVNCLLVGTISIPHCIFK 257

GO:0000460 "maturation of 5.8S rRNA" evidence=ISO

GO:0051731 "polynucleotide 5'-hydroxyl-kinase activity" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VYP6	NOL9_ARATH	2, ., 7, ., 1, ., -	0.6288	0.9308	0.9510	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	376
COG1341	398	COG1341, COG1341, Predicted GTPase or GTP-binding	1e-33
pfam06807	188	pfam06807, Clp1, Pre-mRNA cleavage complex II prot	2e-33
pfam03205	126	pfam03205, MobB, Molybdopterin guanine dinucleotid	1e-12
COG5623	424	COG5623, CLP1, Predicted GTPase subunit of the pre	9e-07
PRK05541	176	PRK05541, PRK05541, adenylylsulfate kinase; Provis	0.004

>gnl|CDD|224260 COG1341, COG1341, Predicted GTPase or GTP-binding protein [General function prediction only]

 Score =  128 bits (324), Expect = 1e-33
 Identities = 78/359 (21%), Positives = 135/359 (37%), Gaps = 76/359 (21%)

Query: 17  IPREWSDAADSIA-----YDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71
           +P + S+  + IA        +     +  + G  + GK+T + +L N LL R +KVA +
Sbjct: 48  VPEDRSEPLEEIADTWESKSESAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAII 107

Query: 72  DTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTL 131
           D DVGQ E   PGF+SL   ++    L       P   YF G +S +  P  Y+  +  L
Sbjct: 108 DADVGQSEIGPPGFISLAFPESPVISL---SELEPFTLYFVGSISPQGFPGRYIAGVARL 164

Query: 132 YDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGI-GYDILVDMLKYITPTHVVKINISF 190
            D  +KE                 +++T GW+KG  G ++   ++  I P  +    I+ 
Sbjct: 165 VDLAKKE---------ADFI----LIDTDGWIKGWGGLELKRALIDAIKPDLI----IAL 207

Query: 191 EKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQCFP 250
           E+ N    +  L+  E +    +++  A     +R           ++LR   Y R    
Sbjct: 208 ERANEL--SPLLEGVESIVY--LKVPDA-VAPRSREE--------RKELREEKYRRYFEG 254

Query: 251 SDLNITIIKEL---------AQALAAYPPY--QVPISSIKIRHLYC------------QV 287
           S +    + ++          + +        +  I    +    C            + 
Sbjct: 255 SKIRTVDLDDVRIQGTPIFQGEPIDDEEEKLLEKLIKKGILHAEKCGGRPYVVKSDLEEG 314

Query: 288 PR---SEIFY-----SLNATIVGLAISSDASENLPHCVGLGIVRGIDTLKGLLYVITPV 338
           PR              L   +VGL       +N   C+GLG++R ID  +  L + T V
Sbjct: 315 PRLVSGNDVRVVPSEELKGLLVGL------IDNDGFCIGLGVLRRIDFKENELTIYTRV 367

Length = 398

>gnl|CDD|219184 pfam06807, Clp1, Pre-mRNA cleavage complex II protein Clp1

 Score =  122 bits (308), Expect = 2e-33
 Identities = 53/202 (26%), Positives = 98/202 (48%), Gaps = 17/202 (8%)

Query: 161 GWVKGIGYDILVDMLKYITPTHVVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQ 220
           GWVKG G ++L+  ++  +PTHVV   +  E+K  P     L + +   V+++E+     
Sbjct: 1   GWVKGEGLELLLHAIRAFSPTHVV--VLGQEEKLYPDLKRALKDKK---VDVVEL----P 51

Query: 221 DSFNRSVLVQKDARLLRDLRIMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKI 280
            S       +K  R++RDLRI+ YF    P  L+           +   PY++P     +
Sbjct: 52  KSGGVVERSKKYRRIIRDLRILEYFYGTLPMPLS---PHSFLVKFSDVTPYKIPFPDSTL 108

Query: 281 R-HLYCQVPRSEIFYSLNATIVGLAISSDASENL--PHCVGLGIVRGIDTLKGLLYVITP 337
              L+  V  +++ Y+LN +++ ++ +   +EN+   +  G G+V G+D  K ++ +++P
Sbjct: 109 PVGLHSDVDPTKVLYALNHSVLAVSYAESLAENVICSNVAGFGVVTGVDVEKRVITILSP 168

Query: 338 VPPGILEKVDLFLQGFIQIPTC 359
           VP  +       L   I  P C
Sbjct: 169 VPREL--PSKFLLVSSITFPDC 188

This family consists of several pre-mRNA cleavage complex II Clp1 (or HeaB) proteins. Six different protein factors are required in vitro for 3' end formation of mammalian pre-mRNAs by endonucleolytic cleavage and polyadenylation. Clp1 is a subunit of cleavage complex IIA, which is required for cleavage, but not for polyadenylation of pre-mRNA. Length = 188

>gnl|CDD|217424 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis protein B

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 31/134 (23%), Positives = 48/134 (35%), Gaps = 20/134 (14%)

Query: 38  PIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTP 96
           PI  + G K+ GKTT  R L+N L +R Y+       D GQ E   PG ++   ++    
Sbjct: 1   PIVLVVGPKDSGKTTLIRKLLNYLKRRGYRVAVVKHLDHGQGEIDKPGKIAALSIEEPAD 60

Query: 97  DLTIPCLKTPKRC-----------YFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNES 145
                  +                 F G  S   +P  Y+  +  L +          + 
Sbjct: 61  GPEGFHQEEEMPLEELLSRLSYLVLFEGFKSPSENPKLYIVIVKELAE--------IEDQ 112

Query: 146 ESPGRTELPLIVNT 159
            +    E  LI+NT
Sbjct: 113 RNKEEDESGLIINT 126

This protein contains a P-loop. Length = 126

>gnl|CDD|227910 COG5623, CLP1, Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]

 Score = 50.3 bits (120), Expect = 9e-07
 Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 13/112 (11%)

Query: 32  SNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVV 91
            N    P   + G    GKT+F   L++  L+  KK  + + D  QP    PG +S   V
Sbjct: 94  FNYEKGPTVMVVGGSQNGKTSFCFTLISYALKLGKKPLFTNLDPSQPGNIFPGAISAIHV 153

Query: 92  DTL------------TPDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTL 131
           D +            T   T+  LK P   + FG      +   Y    + L
Sbjct: 154 DAILDCQEGLWGQSLTSGATLLRLKNP-LVFNFGLTEITENMELYDLQTSKL 204

Length = 424

>gnl|CDD|235498 PRK05541, PRK05541, adenylylsulfate kinase; Provisional

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74
            + +I G    GKTT ++ L   L  +Y  V YLD D
Sbjct: 7  GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGD 44

Length = 176

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	376
KOG2749	415	consensus mRNA cleavage and polyadenylation factor	100.0
COG1341	398	Predicted GTPase or GTP-binding protein [General f	100.0
KOG2750	587	consensus Uncharacterized conserved protein simila	100.0
COG5623	424	CLP1 Predicted GTPase subunit of the pre-mRNA clea	100.0
PF06807	195	Clp1: Pre-mRNA cleavage complex II protein Clp1; I	99.97
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	99.56
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.08
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.78
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.64
KOG1533	290	consensus Predicted GTPase [General function predi	98.52
TIGR03018	207	pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t	98.39
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.34
PRK13768	253	GTPase; Provisional	98.34
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.31
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.28
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.25
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.23
PRK10867	433	signal recognition particle protein; Provisional	98.22
cd02034	116	CooC The accessory protein CooC, which contains a	98.22
TIGR00959	428	ffh signal recognition particle protein. This mode	98.12
PRK14974	336	cell division protein FtsY; Provisional	98.07
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	98.05
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	98.02
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.0
TIGR03029	274	EpsG chain length determinant protein tyrosine kin	97.98
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.88
cd02036	179	MinD Bacterial cell division requires the formatio	97.87
TIGR01969	251	minD_arch cell division ATPase MinD, archaeal. Thi	97.85
cd03114	148	ArgK-like The function of this protein family is u	97.84
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	97.84
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.83
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.81
PRK00889	175	adenylylsulfate kinase; Provisional	97.78
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	97.77
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	97.77
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	97.75
PRK10416	318	signal recognition particle-docking protein FtsY;	97.75
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.74
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.74
PRK13849	231	putative crown gall tumor protein VirC1; Provision	97.73
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	97.71
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	97.7
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.69
cd02040	270	NifH NifH gene encodes component II (iron protein)	97.68
PRK07667	193	uridine kinase; Provisional	97.67
CHL00175	281	minD septum-site determining protein; Validated	97.67
PRK10818	270	cell division inhibitor MinD; Provisional	97.66
PHA02518	211	ParA-like protein; Provisional	97.66
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.65
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	97.65
smart00382	148	AAA ATPases associated with a variety of cellular	97.65
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.62
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	97.61
cd03116	159	MobB Molybdenum is an essential trace element in t	97.61
PRK05541	176	adenylylsulfate kinase; Provisional	97.6
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.59
PRK08118	167	topology modulation protein; Reviewed	97.59
PRK13230	279	nitrogenase reductase-like protein; Reviewed	97.58
PRK13869	405	plasmid-partitioning protein RepA; Provisional	97.58
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.57
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	97.57
TIGR03815	322	CpaE_hom_Actino helicase/secretion neighborhood Cp	97.57
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	97.57
cd02117	212	NifH_like This family contains the NifH (iron prot	97.55
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.55
TIGR03453	387	partition_RepA plasmid partitioning protein RepA.	97.53
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.53
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	97.52
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	97.51
PRK13705	388	plasmid-partitioning protein SopA; Provisional	97.5
PRK06762	166	hypothetical protein; Provisional	97.47
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.46
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.46
PRK06696	223	uridine kinase; Validated	97.45
cd02032	267	Bchl_like This family of proteins contains bchL an	97.45
TIGR01287	275	nifH nitrogenase iron protein. This model describe	97.44
PRK03846	198	adenylylsulfate kinase; Provisional	97.42
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.41
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	97.4
COG1192	259	Soj ATPases involved in chromosome partitioning [C	97.4
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.4
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.4
PRK05480	209	uridine/cytidine kinase; Provisional	97.4
cd03111	106	CpaE_like This protein family consists of proteins	97.39
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.38
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	97.38
PF13173	128	AAA_14: AAA domain	97.38
PRK13886	241	conjugal transfer protein TraL; Provisional	97.37
CHL00072	290	chlL photochlorophyllide reductase subunit L	97.36
PRK11519	719	tyrosine kinase; Provisional	97.35
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.34
PRK05439	311	pantothenate kinase; Provisional	97.34
PRK13232	273	nifH nitrogenase reductase; Reviewed	97.34
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	97.33
COG0489	265	Mrp ATPases involved in chromosome partitioning [C	97.33
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.33
PRK07261	171	topology modulation protein; Provisional	97.32
cd03110	179	Fer4_NifH_child This protein family's function is	97.31
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.31
PF09140	261	MipZ: ATPase MipZ; InterPro: IPR015223 Cell divisi	97.3
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.3
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.3
PRK10037	250	cell division protein; Provisional	97.3
PRK06217	183	hypothetical protein; Validated	97.3
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	97.29
PRK13235	274	nifH nitrogenase reductase; Reviewed	97.28
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.28
PRK03839	180	putative kinase; Provisional	97.25
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.24
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.24
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.24
cd02033	329	BchX Chlorophyllide reductase converts chlorophyll	97.24
PRK13949	169	shikimate kinase; Provisional	97.23
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.22
PRK15453	290	phosphoribulokinase; Provisional	97.21
cd02035	217	ArsA ArsA ATPase functionas as an efflux pump loca	97.21
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	97.21
PF00004	132	AAA: ATPase family associated with various cellula	97.21
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.2
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.19
TIGR02016	296	BchX chlorophyllide reductase iron protein subunit	97.19
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.18
PHA02519	387	plasmid partition protein SopA; Reviewed	97.17
PRK00131	175	aroK shikimate kinase; Reviewed	97.17
PRK08903	227	DnaA regulatory inactivator Hda; Validated	97.17
COG4240	300	Predicted kinase [General function prediction only	97.17
PRK13233	275	nifH nitrogenase reductase; Reviewed	97.17
PRK06547	172	hypothetical protein; Provisional	97.14
PF06564	243	YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p	97.14
PRK14530	215	adenylate kinase; Provisional	97.13
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	97.13
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	97.08
PRK08084	235	DNA replication initiation factor; Provisional	97.07
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.06
PRK00625	173	shikimate kinase; Provisional	97.06
PRK08233	182	hypothetical protein; Provisional	97.06
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.06
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.06
PRK13234	295	nifH nitrogenase reductase; Reviewed	97.04
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.04
PRK13231	264	nitrogenase reductase-like protein; Reviewed	97.04
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	97.03
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.03
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	97.02
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	97.01
PRK09183	259	transposase/IS protein; Provisional	97.01
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.01
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	96.99
PRK05057	172	aroK shikimate kinase I; Reviewed	96.99
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	96.98
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.96
PRK11670	369	antiporter inner membrane protein; Provisional	96.95
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	96.95
PRK05642	234	DNA replication initiation factor; Validated	96.94
PRK06067	234	flagellar accessory protein FlaH; Validated	96.94
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	96.94
COG0455	262	flhG Antiactivator of flagellar biosynthesis FleN,	96.93
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.92
PF13614	157	AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ	96.92
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	96.92
PRK06893	229	DNA replication initiation factor; Validated	96.91
cd00550	254	ArsA_ATPase Oxyanion-translocating ATPase (ArsA).	96.9
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	96.9
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	96.89
PLN02748	468	tRNA dimethylallyltransferase	96.88
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.88
PRK13947	171	shikimate kinase; Provisional	96.87
PRK13236	296	nitrogenase reductase; Reviewed	96.87
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.86
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	96.86
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.86
PLN02840	421	tRNA dimethylallyltransferase	96.84
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	96.83
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	96.83
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.82
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.81
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.81
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	96.81
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.8
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	96.8
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.8
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.79
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	96.79
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	96.78
PRK06526	254	transposase; Provisional	96.77
PF13479	213	AAA_24: AAA domain	96.77
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.77
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.77
PHA00729	226	NTP-binding motif containing protein	96.77
PRK13948	182	shikimate kinase; Provisional	96.76
PTZ00301	210	uridine kinase; Provisional	96.75
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	96.75
PRK05973	237	replicative DNA helicase; Provisional	96.74
PRK14531	183	adenylate kinase; Provisional	96.74
PRK14532	188	adenylate kinase; Provisional	96.72
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	96.72
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	96.72
PTZ00088	229	adenylate kinase 1; Provisional	96.71
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.71
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	96.7
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	96.7
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.7
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	96.7
PF13245	76	AAA_19: Part of AAA domain	96.7
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	96.69
PRK00698	205	tmk thymidylate kinase; Validated	96.69
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	96.69
PF05729	166	NACHT: NACHT domain	96.69
PRK14527	191	adenylate kinase; Provisional	96.68
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	96.66
PRK03731	171	aroL shikimate kinase II; Reviewed	96.65
PF12846	304	AAA_10: AAA-like domain	96.65
PRK14730	195	coaE dephospho-CoA kinase; Provisional	96.64
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	96.61
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.6
PRK08727	233	hypothetical protein; Validated	96.59
PRK14495	452	putative molybdopterin-guanine dinucleotide biosyn	96.58
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	96.58
PRK09825	176	idnK D-gluconate kinase; Provisional	96.58
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.57
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	96.57
PRK06851	367	hypothetical protein; Provisional	96.56
PRK04296	190	thymidine kinase; Provisional	96.56
PRK13946	184	shikimate kinase; Provisional	96.55
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	96.55
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	96.54
PLN02674	244	adenylate kinase	96.54
PRK00279	215	adk adenylate kinase; Reviewed	96.54
PRK08181	269	transposase; Validated	96.53
PHA02530	300	pseT polynucleotide kinase; Provisional	96.53
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	96.53
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	96.53
PLN02796	347	D-glycerate 3-kinase	96.53
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	96.52
PRK00411	394	cdc6 cell division control protein 6; Reviewed	96.52
PRK06761	282	hypothetical protein; Provisional	96.52
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	96.5
PF01935	229	DUF87: Domain of unknown function DUF87; InterPro:	96.48
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.48
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	96.48
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	96.44
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.42
PRK07952	244	DNA replication protein DnaC; Validated	96.41
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.41
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.41
COG1100	219	GTPase SAR1 and related small G proteins [General	96.41
PRK12377	248	putative replication protein; Provisional	96.39
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	96.39
PRK04328	249	hypothetical protein; Provisional	96.39
cd00983	325	recA RecA is a bacterial enzyme which has roles in	96.38
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.38
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.36
PLN03046	460	D-glycerate 3-kinase; Provisional	96.36
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	96.36
PRK13851	344	type IV secretion system protein VirB11; Provision	96.33
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	96.33
PLN03025	319	replication factor C subunit; Provisional	96.32
PRK04182	180	cytidylate kinase; Provisional	96.31
PRK09354	349	recA recombinase A; Provisional	96.31
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	96.3
PRK00440	319	rfc replication factor C small subunit; Reviewed	96.3
PRK06921	266	hypothetical protein; Provisional	96.29
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	96.29
PRK06835	329	DNA replication protein DnaC; Validated	96.28
cd03112	158	CobW_like The function of this protein family is u	96.28
TIGR00101	199	ureG urease accessory protein UreG. This model rep	96.28
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	96.27
COG0218	200	Predicted GTPase [General function prediction only	96.27
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	96.26
COG1855	604	ATPase (PilT family) [General function prediction	96.24
COG4559	259	ABC-type hemin transport system, ATPase component	96.24
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.24
PRK00300	205	gmk guanylate kinase; Provisional	96.23
PRK13833	323	conjugal transfer protein TrbB; Provisional	96.21
PRK07933	213	thymidylate kinase; Validated	96.2
PRK06851	367	hypothetical protein; Provisional	96.2
PRK14528	186	adenylate kinase; Provisional	96.2
PRK08116	268	hypothetical protein; Validated	96.19
PRK02496	184	adk adenylate kinase; Provisional	96.18
COG2884	223	FtsE Predicted ATPase involved in cell division [C	96.17
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	96.17
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.17
PLN02348	395	phosphoribulokinase	96.15
PF02374	305	ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_	96.14
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	96.14
PLN02199	303	shikimate kinase	96.14
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	96.12
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	96.12
PLN02200	234	adenylate kinase family protein	96.11
PRK13764	602	ATPase; Provisional	96.11
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.1
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.1
PRK12402	337	replication factor C small subunit 2; Reviewed	96.09
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.09
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	96.09
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.07
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	96.06
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	96.05
PRK14733	204	coaE dephospho-CoA kinase; Provisional	96.04
PRK11823	446	DNA repair protein RadA; Provisional	96.04
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	96.03
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.02
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	96.01
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.0
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	96.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	95.99
PRK12608	380	transcription termination factor Rho; Provisional	95.99
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	95.99
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	95.99
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	95.96
PLN02924	220	thymidylate kinase	95.95
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	95.94
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	95.94
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	95.94
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	95.93
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	95.93
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	95.92
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	95.91
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	95.91
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	95.91
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	95.9
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	95.9
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	95.9
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	95.89
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	95.89
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	95.88
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	95.88
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	95.87
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	95.86
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	95.86
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	95.86
PRK09302	509	circadian clock protein KaiC; Reviewed	95.86
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	95.85
cd03234	226	ABCG_White The White subfamily represents ABC tran	95.85
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	95.85
PRK13695	174	putative NTPase; Provisional	95.84
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	95.84
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	95.83
PRK13973	213	thymidylate kinase; Provisional	95.83
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	95.83
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	95.83
cd03246	173	ABCC_Protease_Secretion This family represents the	95.83
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	95.82
PRK14491	597	putative bifunctional molybdopterin-guanine dinucl	95.82
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	95.81
PRK01184	184	hypothetical protein; Provisional	95.8
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	95.8
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	95.8
PRK08356	195	hypothetical protein; Provisional	95.79
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	95.79
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	95.79
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	95.79
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	95.79
PRK12422	445	chromosomal replication initiation protein; Provis	95.78
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	95.78
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	95.78
cd03215	182	ABC_Carb_Monos_II This family represents domain II	95.78
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	95.78
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	95.77
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	95.75
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	95.75
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	95.75
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	95.75
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	95.75
PRK08939	306	primosomal protein DnaI; Reviewed	95.74
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	95.73
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	95.73
PF10236	309	DAP3: Mitochondrial ribosomal death-associated pro	95.73
cd03269	210	ABC_putative_ATPase This subfamily is involved in	95.73
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	95.73
PRK12339	197	2-phosphoglycerate kinase; Provisional	95.72
PRK04040	188	adenylate kinase; Provisional	95.71
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	95.71
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	95.71
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	95.71
KOG0781	587	consensus Signal recognition particle receptor, al	95.7
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	95.7
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	95.7
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	95.7
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	95.7
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	95.69
PRK11608	326	pspF phage shock protein operon transcriptional ac	95.69
TIGR02236	310	recomb_radA DNA repair and recombination protein R	95.69
CHL00181	287	cbbX CbbX; Provisional	95.69
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	95.69
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.68
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	95.68
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	95.68
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	95.68
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	95.68
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	95.68
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	95.68
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	95.67
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	95.67
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	95.67
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	95.67
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	95.66
COG1149	284	MinD superfamily P-loop ATPase containing an inser	95.66
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	95.66
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	95.66
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	95.65
PRK14731	208	coaE dephospho-CoA kinase; Provisional	95.65
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	95.64
cd03216	163	ABC_Carb_Monos_I This family represents the domain	95.64
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	95.63
PRK04220	301	2-phosphoglycerate kinase; Provisional	95.63
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	95.63
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	95.63
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	95.62
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	95.61
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	95.61
PLN02165	334	adenylate isopentenyltransferase	95.61
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	95.61
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	95.61
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	95.6
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	95.6
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	95.59
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	95.59
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	95.59
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	95.58
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	95.58
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	95.58
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	95.57
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	95.57
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	95.56
TIGR02533	486	type_II_gspE general secretory pathway protein E.	95.55
PRK11545	163	gntK gluconate kinase 1; Provisional	95.55
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	95.55
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	95.54
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	95.54
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	95.54
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	95.53
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	95.53
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	95.53
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	95.52
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	95.51
PRK12338	319	hypothetical protein; Provisional	95.51
PF01580	205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	95.51
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	95.51
PRK14734	200	coaE dephospho-CoA kinase; Provisional	95.51
PRK04301	317	radA DNA repair and recombination protein RadA; Va	95.51
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	95.5
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	95.49
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	95.48
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	95.48
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.47
PRK14737	186	gmk guanylate kinase; Provisional	95.47
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	95.47
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	95.46
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	95.46
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	95.46
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	95.45
PRK13975	196	thymidylate kinase; Provisional	95.44
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	95.44
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	95.44
PRK10908	222	cell division protein FtsE; Provisional	95.44
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	95.44
PRK14732	196	coaE dephospho-CoA kinase; Provisional	95.43
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	95.43
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	95.43
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	95.42
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	95.41
PRK14526	211	adenylate kinase; Provisional	95.41
PRK10646	153	ADP-binding protein; Provisional	95.4
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	95.4
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	95.39
PTZ00451	244	dephospho-CoA kinase; Provisional	95.39
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	95.38
PRK07429	327	phosphoribulokinase; Provisional	95.38
PLN02318	656	phosphoribulokinase/uridine kinase	95.37
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	95.37
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	95.37
COG1484	254	DnaC DNA replication protein [DNA replication, rec	95.36
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	95.36
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	95.35
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	95.34
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	95.33
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	95.33
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	95.33
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	95.33
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	95.33
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	95.33
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	95.33
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	95.32
cd01128	249	rho_factor Transcription termination factor rho is	95.32
KOG3022	300	consensus Predicted ATPase, nucleotide-binding [Ce	95.32
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	95.32
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	95.32
PRK09112	351	DNA polymerase III subunit delta'; Validated	95.31
COG0003	322	ArsA Predicted ATPase involved in chromosome parti	95.31
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	95.3
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	95.3
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	95.3
COG4987	573	CydC ABC-type transport system involved in cytochr	95.3
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	95.29
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	95.29
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	95.29
PRK00149	450	dnaA chromosomal replication initiation protein; R	95.29
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	95.28
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	95.28

>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]

Probab=100.00  E-value=1.3e-49  Score=378.45  Aligned_cols=305  Identities=21%  Similarity=0.343  Sum_probs=242.6

Q ss_pred             HHHHHHHhhcc--CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCC
Q 017141           21 WSDAADSIAYD--SNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDL   98 (376)
Q Consensus        21 W~~~~~~i~~~--~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~   98 (376)
                      -+.+++.+...  ...+.|||+||+||.++||||+||+|+||+++.|++|.|+|+||||+.++.||+||+..++.+.+..
T Consensus        85 lH~ale~~R~~~e~~~~~GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sitiPGsiaA~~i~~~~D~~  164 (415)
T KOG2749|consen   85 LHAALEKRRMQAEEESSYGPRVMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSITIPGSIAAIPIEMPLDVI  164 (415)
T ss_pred             HHHHHHHHhhhhhhhhccCCEEEEECCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCceecccchhheecccccchh
Confidence            34555544321  1223599999999999999999999999999999999999999999999999999999999975422


Q ss_pred             CCCCCCCCceeEEcCCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccccccHHHHHHHHHHh
Q 017141           99 TIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYI  178 (376)
Q Consensus        99 ~~~~~~~p~~~~f~G~~sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~G~~ll~~~i~~~  178 (376)
                      ....+.+| +.|+||+++|..|+++|..++.+|++.+.+++.     .+++.+.+++|||||||++|.|++.|.++|++|
T Consensus       165 eGf~l~~p-LV~~FG~~sp~~N~~LY~~~~s~La~v~~~~~~-----~n~~ar~sG~iInT~g~i~~egy~~llhai~~f  238 (415)
T KOG2749|consen  165 EGFSLTAP-LVYNFGLTSPSTNLELYKALVSELAEVLKQRLS-----LNPEARVSGCIINTCGWIEGEGYAALLHAIKAF  238 (415)
T ss_pred             hCcccCCc-eeeeccCCCCCcCHHHHHHHHHHHHHHHHHHhc-----cCchhcccceEEeccceeccccHHHHHHHHHHc
Confidence            21224566 689999999999999999999999999999874     355678999999999999999999999999999


Q ss_pred             CCCEEEEEecCcccccCCCCcccccCCCCcceEEEEecCCCCCCCcccccchHHHHHHHHHHHHHHhhhcCCCCCchhhh
Q 017141          179 TPTHVVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQCFPSDLNITII  258 (376)
Q Consensus       179 ~p~~Vv~l~~~~~~~~l~~~~~~~~~~~~~~v~vv~l~~~~~~~~~rs~~~~~~~~~~R~~~~~~YF~~~~~~~~~~~~~  258 (376)
                      +.|.||+++++.....+.+.     -..+..++++.+|+++++ .+|+   ..-++..|..++++||||....++.+   
T Consensus       239 ~v~vviVLg~ErLy~~lkk~-----~~~~~~v~vv~lpKsgGv-~~Rs---~~~r~~~r~~~I~eYFYG~~~~~lsP---  306 (415)
T KOG2749|consen  239 EVDVVIVLGQERLYSSLKKD-----LPPKKNVRVVKLPKSGGV-VARS---KEVRRKLRGRSIREYFYGSVRNELSP---  306 (415)
T ss_pred             CccEEEEeccHHHHHHHHhh-----ccccccceEEEecCCCCe-Eeeh---HHHHHHHhhhhHHHhcccccCCcccc---
Confidence            99999999987544433321     112356789999999984 5666   34578899999999999966554432   


Q ss_pred             HHhhhhhcCCCCeeeecCceEEEEeecCC-Cch------------------hHHHHhhccEEEEEEcCCCCCCC--CceE
Q 017141          259 KELAQALAAYPPYQVPISSIKIRHLYCQV-PRS------------------EIFYSLNATIVGLAISSDASENL--PHCV  317 (376)
Q Consensus       259 ~~~~~~L~~~~P~~v~~~~l~i~~~~~~v-~~~------------------~i~~~lngslVaL~~~~~~~~~~--~~~l  317 (376)
                                ..+.|.|+++++++++.+. |.+                  .+-..|...+.|+..+.+..+++  ++++
T Consensus       307 ----------~t~~Vkf~Dl~v~riga~~~p~S~lp~g~~~e~~~~k~~~vt~~~~l~h~vLAiS~A~~~ed~Vi~S~V~  376 (415)
T KOG2749|consen  307 ----------FTFNVKFSDLTVYRIGAPQAPDSCLPLGMTRENNQLKLVPVTITERLQHHVLAISFAEEPEDNVIKSPVA  376 (415)
T ss_pred             ----------eeEeeecceEEEEEecCCCCCccccccccccccCceEEEecccCHHHheeeEEEEecccchhhhhcCcce
Confidence                      1267999999999987332 111                  13345667788887665444433  4889


Q ss_pred             EEEEEeeeecCCCEEEEEcCCCCCCCCcccEEEecccc
Q 017141          318 GLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQ  355 (376)
Q Consensus       318 GlgiVr~ID~~~~~i~iltP~~~~~l~~v~~Lv~G~i~  355 (376)
                      ||.+|..||.++++|++|+|+|+.+|++  .|+.|.+.
T Consensus       377 Gfv~VteVd~~~~kit~lsP~p~~LPsk--~Li~g~l~  412 (415)
T KOG2749|consen  377 GFVLVTEVDLEKRKITVLSPVPRTLPSK--ALILGDLK  412 (415)
T ss_pred             eEEEEEeccchheeEEEecCCCCCCCcc--eEEeeeee
Confidence            9999999999999999999999999998  88888765

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=100.00  E-value=4.5e-43  Score=341.90  Aligned_cols=306  Identities=26%  Similarity=0.408  Sum_probs=221.9

Q ss_pred             CccCChhHHHHHHHhhcc--C---CCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEE
Q 017141           14 AIYIPREWSDAADSIAYD--S---NTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSL   88 (376)
Q Consensus        14 ~~~ip~~W~~~~~~i~~~--~---~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl   88 (376)
                      ...+|++|.+.++.|...  +   .....+++||+|++|||||||+++|+|+++.+|++++++|+|+||++++|||+|||
T Consensus        45 ~ve~P~d~~~~~e~i~~~~~~~~~~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL  124 (398)
T COG1341          45 LVEVPEDRSEPLEEIADTWESKSESAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISL  124 (398)
T ss_pred             cccCchHhhhHHHHHhhcccccchhccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEe
Confidence            678899999999998741  1   12347899999999999999999999999999999999999999999999999999


Q ss_pred             EecccCCCCCCCCCCCCCceeEEcCCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCcccc-cc
Q 017141           89 TVVDTLTPDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKG-IG  167 (376)
Q Consensus        89 ~~i~~~~~~~~~~~~~~p~~~~f~G~~sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g-~G  167 (376)
                      ..++++..++..   ..|...||+|++||++++.+|+.++.+|++.+++.             ..-+||||+|||+| .|
T Consensus       125 ~~~~s~~~~L~~---l~~~~~~FvG~isP~~~~~~~i~~v~rL~~~a~~~-------------~~~ilIdT~GWi~G~~g  188 (398)
T COG1341         125 AFPESPVISLSE---LEPFTLYFVGSISPQGFPGRYIAGVARLVDLAKKE-------------ADFILIDTDGWIKGWGG  188 (398)
T ss_pred             ecccCCCCCHHH---cCccceEEEeccCCCCChHHHHHHHHHHHHHhhcc-------------CCEEEEcCCCceeCchH
Confidence            999997654332   23456799999999999999999999999987653             23469999999999 89


Q ss_pred             HHHHHHHHHHhCCCEEEEEecCcccccCCCCcccccCCCCcceEEEEecCCCCCCCcccccchHHHHHHHHHHHHHHhhh
Q 017141          168 YDILVDMLKYITPTHVVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQ  247 (376)
Q Consensus       168 ~~ll~~~i~~~~p~~Vv~l~~~~~~~~l~~~~~~~~~~~~~~v~vv~l~~~~~~~~~rs~~~~~~~~~~R~~~~~~YF~~  247 (376)
                      ++++.++++.++||+|++++.+++...+.+. ++       ....++.+...   ..++   +.+|+++|.+++..||++
T Consensus       189 ~elk~~li~~ikP~~Ii~l~~~~~~~~l~~~-~~-------~~~~~~~~~~~---~~~s---R~ER~~~R~e~~~ryf~~  254 (398)
T COG1341         189 LELKRALIDAIKPDLIIALERANELSPLLEG-VE-------SIVYLKVPDAV---APRS---REERKELREEKYRRYFEG  254 (398)
T ss_pred             HHHHHHHHhhcCCCEEEEeccccccchhhhc-cc-------CceEEeccccc---cccC---hhHHHHHHHHHHHHhccC
Confidence            9999999999999999999987765544431 11       11123344332   2333   678999999999999998


Q ss_pred             cCCCCCc----------hh---hh----HHhhhhhcCC---CCeeeecCceEEEEeecC----CCchh----HHHHhhcc
Q 017141          248 CFPSDLN----------IT---II----KELAQALAAY---PPYQVPISSIKIRHLYCQ----VPRSE----IFYSLNAT  299 (376)
Q Consensus       248 ~~~~~~~----------~~---~~----~~~~~~L~~~---~P~~v~~~~l~i~~~~~~----v~~~~----i~~~lngs  299 (376)
                      .....+.          ++   ..    +.........   +-+.+++.-+.+....+.    +..++    -...+.|.
T Consensus       255 ~~~~~v~~~~~~i~g~~if~~~~i~~~~~~~l~~~i~~~~l~~~~~~~~~~~V~~d~~~~~r~~~~~~~~~v~~~~l~gl  334 (398)
T COG1341         255 SKIRTVDLDDVRIQGTPIFQGEPIDDEEEKLLEKLIKKGILHAEKCGGRPYVVKSDLEEGPRLVSGNDVRVVPSEELKGL  334 (398)
T ss_pred             CceEEecchhceeecccccCCCccchhHHHhhhhhhhhccccceecCCceEEEeecccccceeecCCcEEEEChhHhccc
Confidence            3211110          00   00    0111111100   111122211111111110    11111    13458899


Q ss_pred             EEEEEEcCCCCCCCCceEEEEEEeeeecCCCEEEEEcCCCCCCCCcccEEEeccccCC
Q 017141          300 IVGLAISSDASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIP  357 (376)
Q Consensus       300 lVaL~~~~~~~~~~~~~lGlgiVr~ID~~~~~i~iltP~~~~~l~~v~~Lv~G~i~lP  357 (376)
                      +|||+..+      ..|+|+|+|+.||.++++++|+||+  +...++..+++|++++.
T Consensus       335 l~gl~d~~------~~~iGlGvl~~Id~~~~~~~i~t~~--~~~~~i~~i~~Gr~rld  384 (398)
T COG1341         335 LVGLIDND------GFCIGLGVLRRIDFKENELTIYTRV--DDIGEIREIRLGRIRLD  384 (398)
T ss_pred             eEEEecCC------CcEEEEEEEEEeeccCceEEEEecc--cccCceEEEEEEEEEec
Confidence            99998552      4899999999999999999999998  56678899999999887

>KOG2750 consensus Uncharacterized conserved protein similar to ATP/GTP-binding protein [General function prediction only]

Probab=100.00  E-value=2.6e-38  Score=315.26  Aligned_cols=341  Identities=31%  Similarity=0.530  Sum_probs=230.3

Q ss_pred             CCCCccCChhHHHHHHHhhc-cCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEEcCCCCCCCCCCCceEEE
Q 017141           11 PSPAIYIPREWSDAADSIAY-DSNTSPPPIAFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYLDTDVGQPEFTAPGFLSL   88 (376)
Q Consensus        11 ~~~~~~ip~~W~~~~~~i~~-~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll-~~~~~v~~lDlD~GQ~~~~~PG~vSl   88 (376)
                      ..-++.+++-|+.-+..+-. .......||+|++|+|||||||++|.++|+.+ ..+..|+++|+|+||++++|+||+|+
T Consensus       180 ~~~si~~e~~~s~s~~~~~~~~k~d~~~p~im~~g~kgsgKSt~~r~~i~~~l~~~y~~v~~l~~d~gq~e~sp~g~is~  259 (587)
T KOG2750|consen  180 SIFSISVEEYLSTSLEKLVLSLKNDYYQPRIMVIGGKGSGKSTFVRKLINEFLQDIYDHVFSLDCDEGQPEYSPPGCISL  259 (587)
T ss_pred             cccccchhhhhcchhHHhhhhccccccCceeEEeccCCcccchHHHHHHHHHHHhhheEEEEEeccCCCceecCcccccc
Confidence            33455566666455544421 11223468999999999999999999999955 55677999999999999999999999


Q ss_pred             EecccCCCCCCCCCCCC-CceeEEcCCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCcccccc
Q 017141           89 TVVDTLTPDLTIPCLKT-PKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIG  167 (376)
Q Consensus        89 ~~i~~~~~~~~~~~~~~-p~~~~f~G~~sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~G  167 (376)
                      +.+.+|+.+-.+.+... -.+.+|.|.       +.|.+++..++++|+....+.++.   .....++|||+|||++|.|
T Consensus       260 ~~lssPi~~~v~~~ql~~~~l~~~~~s-------d~~~~~v~~l~~~~~~~f~~se~~---~~~~~~~IIn~pGwi~g~g  329 (587)
T KOG2750|consen  260 TKLSSPIDLKVHLCQLSNTLLQFYAGS-------DHYQREVTSLFNCYQRLFDHSEEQ---PKFFGPLIINLPGWIKGFG  329 (587)
T ss_pred             ccccCccccchhhhhhchhhhhhhccc-------hhhhhhhhhHHHHHHHhccchhhc---ccccCceEEecCCcccccc
Confidence            99999976543333222 245678883       667777777777777665433222   1346789999999999999


Q ss_pred             HHHHHHHHHHhCCCEEEEEecCcccccCCCC----cccccCCCCcceEEEEecCCCCCCCcccccchHHHHHHHHHHHHH
Q 017141          168 YDILVDMLKYITPTHVVKINISFEKKNLPAG----AFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMA  243 (376)
Q Consensus       168 ~~ll~~~i~~~~p~~Vv~l~~~~~~~~l~~~----~~~~~~~~~~~v~vv~l~~~~~~~~~rs~~~~~~~~~~R~~~~~~  243 (376)
                      .+|+..+++..+|+|+|.+..+....+++..    .+|..........+++.+...   .+-....+.+++.+|++.+.+
T Consensus       330 aell~~I~Ri~qPt~~V~~~~s~t~~~~~~l~e~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~a~~~r~l~Ils  406 (587)
T KOG2750|consen  330 AELLNHIIRIYQPTHFVEIEISNTKSHLPELGEPQHFSISGRDDFALELLPVQRAS---LNHTLSSRFHAKYLRTLKILS  406 (587)
T ss_pred             HHHHHhHHhhcChhheeehhhhhhccCchhcCCCceeEEecccceeEEEecchhhh---cccccccchhHHHhhhHHHHH
Confidence            9999999999999999999987666555532    344433333344443333221   111223466799999999999


Q ss_pred             HhhhcCCCCC--chhhhHHhhhhhcCCCCeeeecC-ceEEEEeecCCCchh--HHHHhhccEEEEEEcCC----C-----
Q 017141          244 YFRQCFPSDL--NITIIKELAQALAAYPPYQVPIS-SIKIRHLYCQVPRSE--IFYSLNATIVGLAISSD----A-----  309 (376)
Q Consensus       244 YF~~~~~~~~--~~~~~~~~~~~L~~~~P~~v~~~-~l~i~~~~~~v~~~~--i~~~lngslVaL~~~~~----~-----  309 (376)
                      ||+...+...  .+.... -..++....|+.+|.. .+......+++.+.+  ...++|++-|..+...+    +     
T Consensus       407 y~~~~~~~~~~a~f~~~~-p~~~~~~~s~~~i~~~~~I~~~~~~Sdi~p~i~k~~~~i~as~v~~s~~~~~vs~~lg~~~  485 (587)
T KOG2750|consen  407 YFSKNTPFDYAASFPPCL-PSAPLQISSPKGIPGIKGIQDRMEFSDLNPQIIKSALAINASDVYYSNLQDIVSKGLGNFP  485 (587)
T ss_pred             HHHhhcCCchhhcccccC-CCchhhhcCccccchhhccccccchhhcchHhhhhheeecccccccccchhhhhcCCCCcc
Confidence            9997654321  000000 0011222344455433 233323344556665  44555555555443211    0     


Q ss_pred             --CCCCC---ceEEEEEEeeeecCCCEEEEEcCCCCCCCCcccEEEecc-ccCChhhhhccc
Q 017141          310 --SENLP---HCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGF-IQIPTCLLQVTI  365 (376)
Q Consensus       310 --~~~~~---~~lGlgiVr~ID~~~~~i~iltP~~~~~l~~v~~Lv~G~-i~lP~~~~~~~~  365 (376)
                        .+..|   +|+|+|+||+||+||+.+||+||+|.+.++++++|++|. ++||.|++..+.
T Consensus       486 il~~~~P~~~nciGlGIvRgID~Er~il~ivtPvpl~~i~~vd~livg~ri~lpt~fl~~~~  547 (587)
T KOG2750|consen  486 ILQDCTPSSKNCIGLGIVRGIDTERRILYIVTPVPLEKIEDVDCLLVGVRIQLPTCFLDFQP  547 (587)
T ss_pred             eecCCCcCCccceeeEEEeeeecccceEEEecCCCHHHhccCCeEEEeeeccCCcceEeccC
Confidence              01222   499999999999999999999999999999999999996 999999997543

>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.7e-32  Score=255.04  Aligned_cols=290  Identities=19%  Similarity=0.188  Sum_probs=214.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCC------------CCCCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLT------------PDLTIPCL  103 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~------------~~~~~~~~  103 (376)
                      .+|+|||+|+...||||||++|++|+++.+++|.|+++||.|+.++.||+||+.+++...            .|.++.+.
T Consensus        98 ~gp~v~vvGgsq~Gkts~~~tL~syalk~~~~pl~~nlDP~Qp~~~~PG~iSa~h~~~ilD~q~~~wGqSltsGaTll~~  177 (424)
T COG5623          98 KGPTVMVVGGSQNGKTSFCFTLISYALKLGKKPLFTNLDPSQPGNIFPGAISAIHVDAILDCQEGLWGQSLTSGATLLRL  177 (424)
T ss_pred             cCCEEEEECCCcCCceeHHHHHHHHHHHhcCCceEEecCCCCcccccCccccccchhhhhhhhcccccccccccchhhhc
Confidence            489999999999999999999999999999999999999999999999999999987632            13344566


Q ss_pred             CCCceeEEcCCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccccc--cHHHHHHHHHHhCCC
Q 017141          104 KTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGI--GYDILVDMLKYITPT  181 (376)
Q Consensus       104 ~~p~~~~f~G~~sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~--G~~ll~~~i~~~~p~  181 (376)
                      ++| ++|+||.+++.+|+++|..++.+|...+.+|+..     ++..+.+++++|||..-+-.  =.+++..+|+.|+++
T Consensus       178 K~P-lv~nfGl~~i~eN~~LY~l~~s~L~~aV~~r~hl-----~~d~r~sgC~vdTpSIsqldEnla~~~htiI~~f~vn  251 (424)
T COG5623         178 KNP-LVFNFGLTEITENMELYDLQTSKLQEAVKARNHL-----VEDLRLSGCPVDTPSISQLDENLAAFYHTIIKRFEVN  251 (424)
T ss_pred             cCc-eEEecccCccccCHHHHHHHHHHHHHHHHhhhcc-----CccceeecCccCCcchhhhhHHHHHHHHHHHHheeee
Confidence            788 6899999999999999999999999999998632     33467889999999854321  146888899999999


Q ss_pred             EEEEEecCcccccCCCCcccccCCCCcceEEEEecCCCCCCCcccccchHHHHHHHHHHHHHHhhhcCCCCCchhhhHHh
Q 017141          182 HVVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQCFPSDLNITIIKEL  261 (376)
Q Consensus       182 ~Vv~l~~~~~~~~l~~~~~~~~~~~~~~v~vv~l~~~~~~~~~rs~~~~~~~~~~R~~~~~~YF~~~~~~~~~~~~~~~~  261 (376)
                      .||+++++.....+... +    .....-+++.+++..+. .++.   ...-|.++.-.+++||||.....+++.     
T Consensus       252 ivvVlgsErLy~s~k~~-~----~~~~~n~iffiskldG~-~~ve---~e~~rslQrrsI~~YFyGs~~~~lsP~-----  317 (424)
T COG5623         252 IVVVLGSERLYHSLKVI-A----EKLMINRIFFISKLDGF-VEVE---KEVGRSLQRRSISRYFYGSVNNELSPF-----  317 (424)
T ss_pred             EEEEEcchHHHHHHHHH-H----hHHhhhheeeecccCCe-eehH---HHHHHHHHHhHHHHHhcccCCCccCce-----
Confidence            99999987543322210 0    00112247788888773 3322   223455666789999999765443211     


Q ss_pred             hhhhcCCCCeeeecCceEEEEeec---CC-----------C--chhHHHHhhccEEEEEEcCCCCCC----CCceEEEEE
Q 017141          262 AQALAAYPPYQVPISSIKIRHLYC---QV-----------P--RSEIFYSLNATIVGLAISSDASEN----LPHCVGLGI  321 (376)
Q Consensus       262 ~~~L~~~~P~~v~~~~l~i~~~~~---~v-----------~--~~~i~~~lngslVaL~~~~~~~~~----~~~~lGlgi  321 (376)
                              .+.|.+..+.+++...   .+           +  ...-...|.++|.|+....+..+.    -++++||++
T Consensus       318 --------t~~Vdy~~lvv~~~e~~~~nvs~~~~G~~e~~~~v~t~~~~vlqnsIlais~a~e~eDqATV~~SpIlGyv~  389 (424)
T COG5623         318 --------TFNVDYKWLVVRIGEMYVANVSALPLGSTEKVGCVETSDVEVLQNSILAISEAREIEDQATVAGSPILGYVV  389 (424)
T ss_pred             --------EEeecceEEEEEEeecccCccccccccceeeeeeEecccHHHhhhheeeeehhhhccccceecCCceeEEEE
Confidence                    1345555565555221   11           1  112235578899998766443221    247899999


Q ss_pred             EeeeecCCCEEEEEcCCCCCCCCcccEEEecccc
Q 017141          322 VRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQ  355 (376)
Q Consensus       322 Vr~ID~~~~~i~iltP~~~~~l~~v~~Lv~G~i~  355 (376)
                      |..+|..|+++.||.|+|+.++.+  .|+.|..+
T Consensus       390 v~~v~~~krklriL~pvP~~lps~--alI~g~~k  421 (424)
T COG5623         390 VINVGAFKRKLRILCPVPRLLPST--ALIQGDLK  421 (424)
T ss_pred             EEEchhhhhceeEeccCCCCCCcc--eeeeeccc
Confidence            999999999999999999999987  67778654

>PF06807 Clp1: Pre-mRNA cleavage complex II protein Clp1; InterPro: IPR010655 This entry consists of several pre-mRNA cleavage complex II Clp1 (or HeaB) proteins

Probab=99.97  E-value=3.6e-32  Score=247.11  Aligned_cols=190  Identities=36%  Similarity=0.632  Sum_probs=108.2

Q ss_pred             CccccccHHHHHHHHHHhCCCEEEEE-ecCcccccCCCCcccccCC-CCcceEEEEecCCCCCCCcccccchHHHHHHHH
Q 017141          161 GWVKGIGYDILVDMLKYITPTHVVKI-NISFEKKNLPAGAFWLDNF-EGVDVNLIEISSARQDSFNRSVLVQKDARLLRD  238 (376)
Q Consensus       161 Gwv~g~G~~ll~~~i~~~~p~~Vv~l-~~~~~~~~l~~~~~~~~~~-~~~~v~vv~l~~~~~~~~~rs~~~~~~~~~~R~  238 (376)
                      |||+|.|+++|.++++.++|||||+| +.+ + +.++....+.... ....+++++++++++. ..++   +..+++.|+
T Consensus         1 GWvkG~G~~lL~~ii~~~~pt~vv~l~~~~-~-~~~~~l~~~~~~~~~~~~v~vv~l~~s~g~-~~~~---~~~~~~~R~   74 (195)
T PF06807_consen    1 GWVKGLGLELLSHIIRAFEPTHVVVLSGSP-E-RLYPDLKRDLPNKKSGWTVNVVKLPKSGGV-VERS---KLFARDLRE   74 (195)
T ss_dssp             --------HHHHHHHHHTT--EEEEE--SS---CHHHHHHHHHHHHH---GGGEEEE---TT---------HHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHhCCCCEEEEECCCc-h-hhhhhhhHhhhcccccceEEEEEecCCCCC-cccC---HHHHHHHHH
Confidence            89999999999999999999999999 431 1 1111101111110 0112678899998874 3333   566889999


Q ss_pred             HHHHHHhhhcCCCCCchhhhHHhhhhhcCCCCeeeecCceEEEE-eecCCCchhHHHHhhccEEEEEEcCCCCCC--CCc
Q 017141          239 LRIMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRH-LYCQVPRSEIFYSLNATIVGLAISSDASEN--LPH  315 (376)
Q Consensus       239 ~~~~~YF~~~~~~~~~~~~~~~~~~~L~~~~P~~v~~~~l~i~~-~~~~v~~~~i~~~lngslVaL~~~~~~~~~--~~~  315 (376)
                      +++++|||+....++...   +...++.+..||+++++++++.. .+.++++.++.++|||+|||||.....++.  .++
T Consensus        75 ~~i~~YF~~~~~~~l~p~---~~~~~l~~~~p~~v~~~~~~l~~~~~~~~~~~~i~~~L~~sival~~~~~~~~~~~~~~  151 (195)
T PF06807_consen   75 LRIRSYFYGCQRNPLSPH---SFTVPLSDLTPYRVPFPDSALPIGMHSDVPPSHILAALNGSIVALCSPASSPEDPLDSN  151 (195)
T ss_dssp             HHHHHHHH--TTT-B--E---EEEEECCC-EEEEECCCCT---T---S-EEE---HHHHTTEEEEEESS-TT--HHTTS-
T ss_pred             HHHHHHHhhccccCCCCc---ccccchhHCcEEEeeccccccccccccccCHHHHHHHhhhcEEEEEecccCCCCcccCe
Confidence            999999999765444322   23457888899999999999875 677889999999999999999983222221  247


Q ss_pred             eEEEEEEeeeecCCCEEEEEcCCCCCCCCcccEEEeccccCChh
Q 017141          316 CVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTC  359 (376)
Q Consensus       316 ~lGlgiVr~ID~~~~~i~iltP~~~~~l~~v~~Lv~G~i~lP~~  359 (376)
                      |+|||+||+||.+++++|||||+|++.|+.+|+|++|++++|.|
T Consensus       152 ~~G~~~Vr~VD~~~~~l~iLtP~p~~~L~~~~~Lv~g~i~~p~~  195 (195)
T PF06807_consen  152 CLGFGIVRSVDEEKRKLYILTPVPGERLEPVNVLVLGSIELPDC  195 (195)
T ss_dssp             EEEEEEEEEEETTTTEEEEEESSSS------SEEEEEE------
T ss_pred             eEEEEEEEEEECCCCEEEEEcCCChhhcCCCCEEEEcCCcccCC
Confidence            99999999999999999999999999999999999999999986

Six different protein factors are required in vitro for 3' end formation of mammalian pre-mRNAs by endonucleolytic cleavage and polyadenylation. Clp1 is a subunit of cleavage complex IIA, which is required for cleavage, but not for polyadenylation of pre-mRNA []. This entry also includes nucleolar proteins [].; PDB: 2NPI_A.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=99.56  E-value=1.3e-15  Score=131.69  Aligned_cols=114  Identities=31%  Similarity=0.349  Sum_probs=77.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE-EEcCCCCCCCCCCCce----------EEEEecccCCCCCCCCCC-CC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA-YLDTDVGQPEFTAPGF----------LSLTVVDTLTPDLTIPCL-KT  105 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~-~lDlD~GQ~~~~~PG~----------vSl~~i~~~~~~~~~~~~-~~  105 (376)
                      |+|+|||++|||||||++.|+|+|.++|++|+ +.|+|.||.++.+||+          +++...+++.......+. ..
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~~d~pG~Dt~r~~aGA~~~~~~~~~~~~~~~~~~~~~~   80 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFEIDPPGTDTWRFKAGADVVLVSSDEPIALETQFHQRKS   80 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTTCSTTCHHHHHHHCT-SEEEEECSSEEEEEEECSCCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCCCcccCCCCcccccccccceEEEEEcCCceeeeeeccccCC
Confidence            68999999999999999999999999999988 9999999999999999          999988873211110000 11


Q ss_pred             -----------CceeEEcCCCCCCCChHHHHHHHH---HHHHHHHHHhhhcccCCCCCCCCCcEEEeC
Q 017141          106 -----------PKRCYFFGDVSSKRDPTAYLKYIT---TLYDYYRKEYYMFNESESPGRTELPLIVNT  159 (376)
Q Consensus       106 -----------p~~~~f~G~~sp~~~~~~y~~~v~---~L~~~~~~~~~~~~~~~~~~~~~~~lIInT  159 (376)
                                 ....++.|+.++...|+  +.++.   ++.+.+..+.      ..+..+.+++||||
T Consensus        81 ~~L~~~~~~~~~Dlvl~eG~k~~~~~pk--i~~~~~~~~~~~~~~~~~------~~~~~~~~~~ii~~  140 (140)
T PF03205_consen   81 MDLEELLSLLPVDLVLVEGFKSPSPNPK--IEVVRNEEELEELVKRRA------VAPKVDESGKIINT  140 (140)
T ss_dssp             CBHHHHHHHCC-SEEEEESSSSGGGSCE--EEEESSCCHHHHHTCCHC------CECCHCHS-EEE--
T ss_pred             CCHHHHHHhhCCCEEEEecCCCcccCCC--EEEEECccCHHHHhhhhh------hhhhhccceEEEeC
Confidence                       23689999999888887  33333   4444333321      01234678899998

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.08  E-value=2.2e-10  Score=107.28  Aligned_cols=136  Identities=20%  Similarity=0.257  Sum_probs=104.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCC
Q 017141           35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGD  114 (376)
Q Consensus        35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~  114 (376)
                      ..+..|+|+|..|||||||+..|..++-.++..+++++|||.--+...|..|...  +..       ..+.....|-+|.
T Consensus        17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIR--DtV-------kYkEvMkqY~LGP   87 (366)
T KOG1532|consen   17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIR--DTV-------KYKEVMKQYQLGP   87 (366)
T ss_pred             cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchh--hhh-------hHHHHHHHhCCCC
Confidence            4578999999999999999999999999999899999999999888888777654  211       1111223456664


Q ss_pred             CC-CCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccccc----cHHHHHHHHHHhCCCEEEEEecC
Q 017141          115 VS-SKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGI----GYDILVDMLKYITPTHVVKINIS  189 (376)
Q Consensus       115 ~s-p~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~----G~~ll~~~i~~~~p~~Vv~l~~~  189 (376)
                      +. ...+.++|...+.+.++.++++-.          .-..+||||||.|+-+    .-.++.+.+....|+.|+++-+.
T Consensus        88 NGgI~TsLNLF~tk~dqv~~~iek~~~----------~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt  157 (366)
T KOG1532|consen   88 NGGIVTSLNLFATKFDQVIELIEKRAE----------EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDT  157 (366)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHhhc----------ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecC
Confidence            43 356789999999999988887732          2347899999998753    22678888888999999988764

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.78  E-value=1.3e-09  Score=102.47  Aligned_cols=47  Identities=23%  Similarity=0.338  Sum_probs=34.1

Q ss_pred             EEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEE
Q 017141           42 ICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSL   88 (376)
Q Consensus        42 V~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl   88 (376)
                      |+||.||||||||+.+..++...++++++|++||+.-++..+..+..
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDi   47 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDI   47 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEG
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHH
Confidence            78999999999999999999999999999999999998766666554

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.64  E-value=5.7e-08  Score=88.13  Aligned_cols=132  Identities=14%  Similarity=0.120  Sum_probs=83.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSS  117 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~sp  117 (376)
                      .-++|+||.||||||+|+.+.++..+.|+.+-+|++||.+-.|-.|-++.+.-+-+.- +        ..--+=+|.+  
T Consensus         4 ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvd-D--------VmEdl~~GPN--   72 (273)
T KOG1534|consen    4 YAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVD-D--------VMEDLDLGPN--   72 (273)
T ss_pred             eeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHH-H--------HHHHhccCCC--
Confidence            4589999999999999999999999999999999999999999999888764222110 0        0001223322  


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCcccccc-----HHHHHHHHH-HhCCCEEEEEecC
Q 017141          118 KRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIG-----YDILVDMLK-YITPTHVVKINIS  189 (376)
Q Consensus       118 ~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~G-----~~ll~~~i~-~~~p~~Vv~l~~~  189 (376)
                       +-   .+-|++.|++.....-.   +  -......-+|+|+||.|+=..     .+++.++-+ .|++-.|..+++.
T Consensus        73 -Gg---Lv~cmEyl~~NldwL~~---~--~Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsq  141 (273)
T KOG1534|consen   73 -GG---LVYCMEYLLENLDWLEE---E--IGDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQ  141 (273)
T ss_pred             -cc---chhHHHHHHHHHHHHHh---h--ccCccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccc
Confidence             11   12244444444332210   0  011245679999999987432     234444444 5667777777653

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=98.52  E-value=2.4e-07  Score=85.43  Aligned_cols=123  Identities=15%  Similarity=0.183  Sum_probs=78.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCCCCCCC
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSSKR  119 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~sp~~  119 (376)
                      .+|+||+||||||+|.-....+-..|+++++|++||+.-.+..|.-++...+-+...         -...+=+|   |.+
T Consensus         5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~ed---------vm~~~~LG---PNg   72 (290)
T KOG1533|consen    5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVED---------VMEELGLG---PNG   72 (290)
T ss_pred             eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHH---------HHHHhCCC---Cch
Confidence            589999999999999999999999999999999999999998888888654433100         00012223   222


Q ss_pred             ChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccccc-----cHHHHHHHHHHhCCCEE
Q 017141          120 DPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGI-----GYDILVDMLKYITPTHV  183 (376)
Q Consensus       120 ~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~-----G~~ll~~~i~~~~p~~V  183 (376)
                      ....-++....=.+.+.++++.        .+..-+++|.||.|+=+     -..+++.+.+ .+...+
T Consensus        73 ~l~yc~E~l~~~idwl~~~l~~--------~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek-~~~rl~  132 (290)
T KOG1533|consen   73 ALKYCMEYLEANIDWLLEKLKP--------LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEK-LDYRLV  132 (290)
T ss_pred             hHHHHHHHHHhhhHHHHHHhhh--------ccCcEEEEeCCCcEEEEeccchHHHHHHHHHH-cCceEE
Confidence            2222233333333555555432        25567999999998632     2345555544 444333

>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase

Probab=98.39  E-value=9e-06  Score=74.58  Aligned_cols=66  Identities=18%  Similarity=0.238  Sum_probs=51.2

Q ss_pred             CccCChhHHHHHHHhhccC----CCCCCCEEEEEcCC-CCcHHHHHHHHHHHHHH-cCCcEEEEcCCCCCCC
Q 017141           14 AIYIPREWSDAADSIAYDS----NTSPPPIAFICGAK-NCGKTTFSRHLVNVLLQ-RYKKVAYLDTDVGQPE   79 (376)
Q Consensus        14 ~~~ip~~W~~~~~~i~~~~----~~~~~~~vlV~G~~-~sGKSTl~r~L~N~ll~-~~~~v~~lDlD~GQ~~   79 (376)
                      .-.+-++|..+-..+....    .....++|.|+|+| |+||||++..|+-.+.+ .|++|++||+|+..+.
T Consensus         8 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~   79 (207)
T TIGR03018         8 RSRIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPS   79 (207)
T ss_pred             CCHHHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChh
Confidence            3446677888877765211    22346789999877 99999999999999986 6999999999998765

Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.34  E-value=2.3e-06  Score=86.68  Aligned_cols=42  Identities=19%  Similarity=0.189  Sum_probs=38.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      +.+|+++|+.||||||++.-|+.++.++|++|+++++|+.++
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~  141 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA  141 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence            568999999999999999999999988899999999998763

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK13768 GTPase; Provisional

Probab=98.34  E-value=2.7e-06  Score=80.73  Aligned_cols=42  Identities=29%  Similarity=0.342  Sum_probs=38.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ..++|.|+.|+||||++..++.++...|++|+++|+||+...
T Consensus         3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~   44 (253)
T PRK13768          3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEY   44 (253)
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCcccc
Confidence            468999999999999999999999999999999999997654

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.31  E-value=3.9e-06  Score=74.46  Aligned_cols=40  Identities=30%  Similarity=0.424  Sum_probs=36.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      .++++|+.|+||||+++.|+..+.+.+.+|+++|+|+..+
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~   41 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP   41 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence            5889999999999999999999999999999999998544

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.28  E-value=4.3e-06  Score=80.21  Aligned_cols=40  Identities=30%  Similarity=0.375  Sum_probs=37.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      ++.+|+++|+.|+||||.+.-|+.++.+.|++|+++|+|+
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~  110 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT  110 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence            3568999999999999999999999999999999999997

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.25  E-value=3.3e-06  Score=85.99  Aligned_cols=43  Identities=26%  Similarity=0.398  Sum_probs=39.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      .+.+|+++|+.|+||||+++.|+.++.+.|++|+++++|+..+
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~  136 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP  136 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence            3668999999999999999999999999999999999998543

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.23  E-value=1.2e-05  Score=80.10  Aligned_cols=43  Identities=28%  Similarity=0.303  Sum_probs=39.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      .+..++++|++|+||||++.-|+.++.+++.+|.++++|+..+
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~  247 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS  247 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence            4678999999999999999999999989999999999997744

>PRK10867 signal recognition particle protein; Provisional

Probab=98.22  E-value=6.2e-06  Score=83.83  Aligned_cols=120  Identities=23%  Similarity=0.324  Sum_probs=71.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDV  115 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~  115 (376)
                      +.+|+++|+.||||||++.-|+.++.++ |.+|+++|+|+-.+.     .     ++... .+. ....-|    ++...
T Consensus       100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a-----a-----~eQL~-~~a-~~~gv~----v~~~~  163 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA-----A-----IEQLK-TLG-EQIGVP----VFPSG  163 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH-----H-----HHHHH-HHH-hhcCCe----EEecC
Confidence            5689999999999999999999999988 999999999985432     1     11100 000 001111    12211


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccc--cccHHHHHHHHHHhCCCEEEEEec
Q 017141          116 SSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVK--GIGYDILVDMLKYITPTHVVKINI  188 (376)
Q Consensus       116 sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~--g~G~~ll~~~i~~~~p~~Vv~l~~  188 (376)
                       ...+|....   .+..+..+.            .....+||||+|...  ....+-+..+.+..+|+.++.+-+
T Consensus       164 -~~~dp~~i~---~~a~~~a~~------------~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVld  222 (433)
T PRK10867        164 -DGQDPVDIA---KAALEEAKE------------NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVD  222 (433)
T ss_pred             -CCCCHHHHH---HHHHHHHHh------------cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEe
Confidence             123443222   222221111            123469999999753  234456667777888988766554

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=98.22  E-value=4.8e-06  Score=69.68  Aligned_cols=36  Identities=33%  Similarity=0.375  Sum_probs=35.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      |++.|..|+||||++..|+.++.+++++|.++|+|+
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~   37 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP   37 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence            789999999999999999999999999999999999

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>TIGR00959 ffh signal recognition particle protein

Probab=98.12  E-value=8.9e-06  Score=82.64  Aligned_cols=120  Identities=20%  Similarity=0.329  Sum_probs=71.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDV  115 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll-~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~  115 (376)
                      +..++++|+.|+||||++.-|+.++. +.|.+|+++|+|+-.+.     .+-  -+.....     ...-|  .+..+. 
T Consensus        99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~-----a~~--QL~~~a~-----~~gvp--~~~~~~-  163 (428)
T TIGR00959        99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA-----AIE--QLKVLGQ-----QVGVP--VFALGK-  163 (428)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH-----HHH--HHHHHHH-----hcCCc--eEecCC-
Confidence            45899999999999999999999986 57899999999984442     000  0000000     01112  122221 


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccc--cccHHHHHHHHHHhCCCEEEEEec
Q 017141          116 SSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVK--GIGYDILVDMLKYITPTHVVKINI  188 (376)
Q Consensus       116 sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~--g~G~~ll~~~i~~~~p~~Vv~l~~  188 (376)
                        ..+|...   ..+..+....+            ....+||||+|-..  ....+-+.++.+.++|+.++.+-+
T Consensus       164 --~~~P~~i---~~~al~~~~~~------------~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvd  221 (428)
T TIGR00959       164 --GQSPVEI---ARRALEYAKEN------------GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVD  221 (428)
T ss_pred             --CCCHHHH---HHHHHHHHHhc------------CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEe
Confidence              2345321   22222221111            23469999999753  334566677788888988776654

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.07  E-value=1.5e-05  Score=78.56  Aligned_cols=40  Identities=25%  Similarity=0.212  Sum_probs=37.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      +.+|+++|+.|+||||+++.|+.++...+.+|+++++|+.
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~  179 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF  179 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence            5789999999999999999999999888899999999954

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=98.05  E-value=5.3e-05  Score=69.04  Aligned_cols=43  Identities=23%  Similarity=0.236  Sum_probs=39.9

Q ss_pred             CCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           37 PPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        37 ~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .++|+|++.+ |+||||++..|+..+.+.|.+|+++|+|+..+.
T Consensus        17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~   60 (204)
T TIGR01007        17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSV   60 (204)
T ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChh
Confidence            6789999888 999999999999999999999999999998765

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.02  E-value=2.2e-05  Score=78.55  Aligned_cols=122  Identities=25%  Similarity=0.371  Sum_probs=80.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDV  115 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~  115 (376)
                      ++.+||++|=.||||||.|--|++|+-+++++|.++-||+--|-          .+++.-      .+......-|||. 
T Consensus        99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpA----------A~eQL~------~La~q~~v~~f~~-  161 (451)
T COG0541          99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPA----------AIEQLK------QLAEQVGVPFFGS-  161 (451)
T ss_pred             CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChH----------HHHHHH------HHHHHcCCceecC-
Confidence            46799999999999999999999999999999999999976543          223310      0000012237777 


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCcccc--ccHHHHHHHHHHhCCCEEEEEecC
Q 017141          116 SSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKG--IGYDILVDMLKYITPTHVVKINIS  189 (376)
Q Consensus       116 sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g--~G~~ll~~~i~~~~p~~Vv~l~~~  189 (376)
                      ....+|..   .+.+-++..++.            ....+||||-|-..-  .=.+-+.++-+.++||.++.+-+.
T Consensus       162 ~~~~~Pv~---Iak~al~~ak~~------------~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDa  222 (451)
T COG0541         162 GTEKDPVE---IAKAALEKAKEE------------GYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDA  222 (451)
T ss_pred             CCCCCHHH---HHHHHHHHHHHc------------CCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEec
Confidence            33445642   233333333322            345799999996442  123455667788999998887653

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.00  E-value=1.5e-05  Score=72.76  Aligned_cols=41  Identities=32%  Similarity=0.384  Sum_probs=35.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      |.+|+++|++|+||||.+--|+.++..++++|+++-+|...
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R   41 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR   41 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence            35799999999999999999999999889999999998654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG

Probab=97.98  E-value=6.8e-05  Score=71.57  Aligned_cols=44  Identities=20%  Similarity=0.208  Sum_probs=39.4

Q ss_pred             CCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           36 PPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        36 ~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .+.+|+|.+++ |.||||++..|+-.+.+.|++|.+||+|+..+.
T Consensus       102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~  146 (274)
T TIGR03029       102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPV  146 (274)
T ss_pred             CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCcc
Confidence            45678888776 899999999999999999999999999998876

The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=5.6e-05  Score=74.51  Aligned_cols=123  Identities=24%  Similarity=0.350  Sum_probs=81.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCC
Q 017141           35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGD  114 (376)
Q Consensus        35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~  114 (376)
                      ..+.+||++|=.|+||||.|.-|++|+-++|++|+++-.|.          .-+..+++.-..  ...    .+.=|||+
T Consensus        99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDT----------FRagAfDQLkqn--A~k----~~iP~ygs  162 (483)
T KOG0780|consen   99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADT----------FRAGAFDQLKQN--ATK----ARVPFYGS  162 (483)
T ss_pred             CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecc----------cccchHHHHHHH--hHh----hCCeeEec
Confidence            34679999999999999999999999999999999998883          333334432100  001    13448887


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccccc-c-HHHHHHHHHHhCCCEEEEEecC
Q 017141          115 VSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGI-G-YDILVDMLKYITPTHVVKINIS  189 (376)
Q Consensus       115 ~sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~-G-~~ll~~~i~~~~p~~Vv~l~~~  189 (376)
                      .+-. +|-   ....+=.+.++++            +-.-+|+||.|--+-. + .+-+.++.++++||.||.+-+.
T Consensus       163 yte~-dpv---~ia~egv~~fKke------------~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDa  223 (483)
T KOG0780|consen  163 YTEA-DPV---KIASEGVDRFKKE------------NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDA  223 (483)
T ss_pred             cccc-chH---HHHHHHHHHHHhc------------CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEec
Confidence            5532 332   2222223333332            3456899999976542 2 4667788899999998877654

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.87  E-value=2e-05  Score=69.59  Aligned_cols=40  Identities=33%  Similarity=0.384  Sum_probs=34.9

Q ss_pred             EEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           40 AFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        40 vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      |.|.+.| |+||||++..|+-.+.++|.+|+++|+|+.|+.
T Consensus         2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~   42 (179)
T cd02036           2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRN   42 (179)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Confidence            4555554 999999999999999999999999999998765

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>TIGR01969 minD_arch cell division ATPase MinD, archaeal

Probab=97.85  E-value=2.6e-05  Score=72.87  Aligned_cols=42  Identities=36%  Similarity=0.388  Sum_probs=37.1

Q ss_pred             EEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141           39 IAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF   80 (376)
Q Consensus        39 ~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~   80 (376)
                      +|.|++.| |+||||++..|+..+.+.|++|+++|+|+.|+..
T Consensus         2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~   44 (251)
T TIGR01969         2 IITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANL   44 (251)
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccc
Confidence            56777777 8999999999999999999999999999987653

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.84  E-value=2.4e-05  Score=68.16  Aligned_cols=40  Identities=35%  Similarity=0.462  Sum_probs=37.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      ++.++|+.|+||||+++.|+-++.+.+.++.++|+|++++
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~   40 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSP   40 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC
Confidence            3789999999999999999999999999999999998764

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=97.84  E-value=3.1e-05  Score=68.07  Aligned_cols=45  Identities=36%  Similarity=0.414  Sum_probs=39.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCc
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPG   84 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG   84 (376)
                      +.|+|++|||||||++.|+..+.++|.+|+++..|.+..++..||
T Consensus         2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~~~~~d~~~   46 (155)
T TIGR00176         2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDHHDFDIDKNG   46 (155)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccccCCCcc
Confidence            689999999999999999999988899999999986655555554

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.83  E-value=8.4e-05  Score=71.19  Aligned_cols=42  Identities=21%  Similarity=0.264  Sum_probs=37.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      ++.+++++|+.|+||||+++.|+.++...+.++.++++|..+
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r  115 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  115 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            457999999999999999999999988888899999999554

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.81  E-value=2.7e-05  Score=72.23  Aligned_cols=49  Identities=29%  Similarity=0.324  Sum_probs=43.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcC-CcEEEEcCCCCCCCCCCCceEEEEe
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRY-KKVAYLDTDVGQPEFTAPGFLSLTV   90 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~-~~v~~lDlD~GQ~~~~~PG~vSl~~   90 (376)
                      +|.|||--||||||++.+|+-+++.++ +.|..+|+||   ++..|+.+.+-.
T Consensus         2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp---d~nL~~~LGve~   51 (255)
T COG3640           2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP---DSNLPEALGVEE   51 (255)
T ss_pred             eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC---CCChHHhcCCCC
Confidence            699999999999999999888888877 9999999999   667788777643

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.78  E-value=4.2e-05  Score=68.01  Aligned_cols=39  Identities=31%  Similarity=0.348  Sum_probs=36.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+..|.++|.+||||||+++.|+..+...+.++.++|.|
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D   41 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD   41 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence            477999999999999999999999998888889999998

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.77  E-value=2.6e-05  Score=68.54  Aligned_cols=38  Identities=37%  Similarity=0.458  Sum_probs=35.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      |..|.++|-.||||||+|+.|..+|...|.++++||.|
T Consensus         2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD   39 (156)
T PF01583_consen    2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGD   39 (156)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCc
Confidence            56899999999999999999999999999999999998

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=97.77  E-value=4e-05  Score=71.94  Aligned_cols=43  Identities=33%  Similarity=0.438  Sum_probs=38.2

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF   80 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~   80 (376)
                      ++|.|++.| |+||||++-.|+-.+.+.|++|+++|+|++++..
T Consensus         2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~   45 (261)
T TIGR01968         2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNL   45 (261)
T ss_pred             eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCe
Confidence            467787777 8999999999999999999999999999987653

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=97.75  E-value=4.6e-05  Score=70.91  Aligned_cols=42  Identities=36%  Similarity=0.472  Sum_probs=38.1

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      +.|.++-.| |+||||.+..|+..+.++|.+|.++|+||.|+.
T Consensus         2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl   44 (231)
T PF07015_consen    2 PVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPL   44 (231)
T ss_pred             CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence            456777777 899999999999999999999999999999986

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.75  E-value=4.2e-05  Score=74.96  Aligned_cols=43  Identities=26%  Similarity=0.273  Sum_probs=39.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      .+.+++++|++|+||||+++.|+.++...+++|.++|+|+.+.
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~  155 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA  155 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch
Confidence            4679999999999999999999999998999999999998554

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.74  E-value=4.8e-05  Score=61.55  Aligned_cols=37  Identities=32%  Similarity=0.382  Sum_probs=34.7

Q ss_pred             EEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           40 AFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        40 vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      |.|.|.| |+||||+++.|+.++.+++.++.++|+|+.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~   39 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ   39 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            6788877 999999999999999999999999999988

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.74  E-value=8.1e-05  Score=72.35  Aligned_cols=56  Identities=29%  Similarity=0.218  Sum_probs=46.4

Q ss_pred             HHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           21 WSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        21 W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      ...+++.+..  ....+.+|.|+|++|+|||||+..|+..+.+.+.+|.++++|+..+
T Consensus        20 ~~~~~~~~~~--~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~   75 (300)
T TIGR00750        20 AKQLLDRIMP--YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSP   75 (300)
T ss_pred             HHHHHHhCCc--ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            4556666642  2235789999999999999999999999999999999999998654

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=97.73  E-value=5e-05  Score=71.14  Aligned_cols=41  Identities=32%  Similarity=0.429  Sum_probs=37.3

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      ++|.|.+.| |+||||++..|+-++.++|++|+++|+||.++
T Consensus         2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s   43 (231)
T PRK13849          2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRP   43 (231)
T ss_pred             eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            368888888 89999999999999999999999999999655

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=97.71  E-value=3.9e-05  Score=68.58  Aligned_cols=40  Identities=33%  Similarity=0.454  Sum_probs=33.6

Q ss_pred             EEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           40 AFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        40 vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      |+|.|.| |+||||++..|+.++.++|++|+++|+|+..+.
T Consensus         1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~   41 (195)
T PF01656_consen    1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPN   41 (195)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHH
T ss_pred             CEEEcCCCCccHHHHHHHHHhccccccccccccccCccccc
Confidence            3455555 999999999999999999999999999987654

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=97.70  E-value=6.1e-05  Score=72.30  Aligned_cols=48  Identities=27%  Similarity=0.220  Sum_probs=41.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEE
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLS   87 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vS   87 (376)
                      +.|-|+|.+|||||||+..|+..|.++| +|++++.|+.+.+- .||.=|
T Consensus         2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~~-~~g~Ds   49 (274)
T PRK14493          2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTERLN-PDGTDT   49 (274)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcCC-CCCCCc
Confidence            4689999999999999999999999999 89999999987543 666433

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.69  E-value=0.0001  Score=72.61  Aligned_cols=45  Identities=29%  Similarity=0.271  Sum_probs=41.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ..+.+|-|+|++|+|||||+..|+.++.+.+++|.++..||..+.
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~   98 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTR   98 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccc
Confidence            346799999999999999999999999999999999999997653

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=97.68  E-value=6.5e-05  Score=71.18  Aligned_cols=42  Identities=26%  Similarity=0.242  Sum_probs=37.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .+|.|+|--|+||||+|..|+-.|.++|++|++||+||..+.
T Consensus         2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~   43 (270)
T cd02040           2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADS   43 (270)
T ss_pred             cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCc
Confidence            367788877999999999999999999999999999997654

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>PRK07667 uridine kinase; Provisional

Probab=97.67  E-value=0.00011  Score=66.79  Aligned_cols=51  Identities=22%  Similarity=0.147  Sum_probs=40.9

Q ss_pred             HHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           23 DAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        23 ~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .+++.+.+..  .....|.|+|+.||||||+|+.|+..+-+.+.++.++++|-
T Consensus         5 ~~~~~~~~~~--~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd   55 (193)
T PRK07667          5 ELINIMKKHK--ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD   55 (193)
T ss_pred             HHHHHHHhcC--CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence            4455554322  23578999999999999999999999988888999999984

>CHL00175 minD septum-site determining protein; Validated

Probab=97.67  E-value=6.6e-05  Score=71.90  Aligned_cols=44  Identities=30%  Similarity=0.374  Sum_probs=39.1

Q ss_pred             CCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141           37 PPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF   80 (376)
Q Consensus        37 ~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~   80 (376)
                      +.+|.|+|.| |+||||++..|+-.+.+.|++|+++|+|++++..
T Consensus        15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l   59 (281)
T CHL00175         15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNL   59 (281)
T ss_pred             ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCh
Confidence            4678888876 8999999999999999999999999999987653

>PRK10818 cell division inhibitor MinD; Provisional

Probab=97.66  E-value=7.5e-05  Score=71.00  Aligned_cols=43  Identities=33%  Similarity=0.405  Sum_probs=38.6

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF   80 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~   80 (376)
                      .+|.|++.| |+||||++-.|+-.+.++|++|+++|+|++++..
T Consensus         3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~   46 (270)
T PRK10818          3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNL   46 (270)
T ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCCh
Confidence            468888877 8999999999999999999999999999987653

>PHA02518 ParA-like protein; Provisional

Probab=97.66  E-value=8.2e-05  Score=67.60  Aligned_cols=39  Identities=31%  Similarity=0.308  Sum_probs=35.9

Q ss_pred             EEEEEcCCC-CcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           39 IAFICGAKN-CGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        39 ~vlV~G~~~-sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      +|.|.+.|| +||||++..|+-+|.++|++|+++|+|+-.
T Consensus         2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~   41 (211)
T PHA02518          2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQG   41 (211)
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            688999995 999999999999999999999999999854

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.65  E-value=6.9e-05  Score=56.58  Aligned_cols=33  Identities=33%  Similarity=0.473  Sum_probs=29.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      .|.|+|+.||||||+++.|.+++  .+.++.++|-
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~   33 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE   33 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence            37899999999999999999998  6678888876

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=97.65  E-value=7.3e-05  Score=66.09  Aligned_cols=40  Identities=30%  Similarity=0.351  Sum_probs=34.7

Q ss_pred             EEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           40 AFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        40 vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      |.|+++| |+||||++..|+.++.+.|++|.++|+|+..+.
T Consensus         2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~   42 (169)
T cd02037           2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPS   42 (169)
T ss_pred             EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Confidence            4555555 999999999999999999999999999996643

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.65  E-value=4.5e-05  Score=62.88  Aligned_cols=39  Identities=31%  Similarity=0.396  Sum_probs=32.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      +..++|+|++|+||||+++.|++.+...+..+.+++++.
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~   40 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED   40 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence            468999999999999999999999876655677776653

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.62  E-value=7.7e-05  Score=61.76  Aligned_cols=23  Identities=30%  Similarity=0.598  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|+|+|++||||||+|+.|++.+
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999999987

...

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=97.61  E-value=0.00085  Score=72.93  Aligned_cols=59  Identities=27%  Similarity=0.337  Sum_probs=46.8

Q ss_pred             HHHHHHHhhc----cCCCCCCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           21 WSDAADSIAY----DSNTSPPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        21 W~~~~~~i~~----~~~~~~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ..+++..|..    ......+.+|+|.|.+ |.||||++..|+..+...|.+|.+||+|+..+.
T Consensus       511 ~~Ea~r~lrt~l~~~~~~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~  574 (726)
T PRK09841        511 AVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGY  574 (726)
T ss_pred             HHHHHHHHHHHhhhhccCCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence            5555554432    1122346799999988 999999999999999999999999999998775

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.61  E-value=0.00012  Score=64.62  Aligned_cols=47  Identities=28%  Similarity=0.371  Sum_probs=39.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCc
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPG   84 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG   84 (376)
                      +.+.|+|.+|||||||++.|+..+-..|.+|.++..|...-++..||
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~~~~d~~g   48 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHDFDIDTPG   48 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCCcccccCcc
Confidence            47899999999999999999999988899999998876654443444

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.60  E-value=9.6e-05  Score=65.74  Aligned_cols=39  Identities=36%  Similarity=0.550  Sum_probs=34.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ++..|+++|..||||||+++.|++++...+..+.++|.|
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d   44 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGD   44 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecH
Confidence            467999999999999999999999998777888888754

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.59  E-value=9.8e-05  Score=71.20  Aligned_cols=42  Identities=29%  Similarity=0.298  Sum_probs=37.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-C-CcEEEEcCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-Y-KKVAYLDTDVGQ   77 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~-~~v~~lDlD~GQ   77 (376)
                      .+..++++|++|+||||++..|+.++..+ + ++|.++++|+..
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r  236 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR  236 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence            35699999999999999999999999876 4 899999999743

>PRK08118 topology modulation protein; Reviewed

Probab=97.59  E-value=5.4e-05  Score=67.30  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=22.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++|+|+|+.||||||||+.|++.+
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l   25 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKL   25 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            489999999999999999999987

>PRK13230 nitrogenase reductase-like protein; Reviewed

Probab=97.58  E-value=9.8e-05  Score=70.76  Aligned_cols=41  Identities=22%  Similarity=0.174  Sum_probs=37.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      .+|.|+|--|+||||+|-.|+-.|.+.|++|+++|+||+.+
T Consensus         2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n   42 (279)
T PRK13230          2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKAD   42 (279)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCccc
Confidence            36788897799999999999999999999999999999844

>PRK13869 plasmid-partitioning protein RepA; Provisional

Probab=97.58  E-value=0.00015  Score=73.56  Aligned_cols=41  Identities=29%  Similarity=0.286  Sum_probs=36.4

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .+|.|+..| |+||||++-.|+-.|...|++|++||+||. +.
T Consensus       122 ~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ-~~  163 (405)
T PRK13869        122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ-AS  163 (405)
T ss_pred             eEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCC-CC
Confidence            567777777 899999999999999999999999999994 44

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.57  E-value=0.00015  Score=60.48  Aligned_cols=38  Identities=29%  Similarity=0.489  Sum_probs=32.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..++|.|++|+||||+++.+++.+...+..+.+++++
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~   56 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS   56 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence            56899999999999999999999998667777777664

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=97.57  E-value=0.00011  Score=69.86  Aligned_cols=39  Identities=26%  Similarity=0.250  Sum_probs=35.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      .+|.|+|--|+||||++..|+-.|.++|++|++||+||.
T Consensus         3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq   41 (270)
T PRK13185          3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPK   41 (270)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            467777755999999999999999999999999999984

>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein

Probab=97.57  E-value=0.00021  Score=70.02  Aligned_cols=44  Identities=14%  Similarity=0.154  Sum_probs=40.3

Q ss_pred             CCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           36 PPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        36 ~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .+.+|.|+|.| |+||||++-.|+-.+.+.|++|++||+|+..+.
T Consensus        92 ~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~  136 (322)
T TIGR03815        92 RGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGG  136 (322)
T ss_pred             CceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence            47899999988 899999999999999999999999999998765

Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=97.57  E-value=0.00011  Score=68.46  Aligned_cols=39  Identities=31%  Similarity=0.347  Sum_probs=35.9

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      ++|.|+++| |+||||++..|+-.+.++|++|++||+|+.
T Consensus         2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q   41 (246)
T TIGR03371         2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQ   41 (246)
T ss_pred             cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            468888877 999999999999999999999999999994

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=97.55  E-value=0.00013  Score=67.09  Aligned_cols=40  Identities=30%  Similarity=0.253  Sum_probs=36.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      +|.|.|--|+||||++-.|+-.|.+.|++|.++|+||+-+
T Consensus         2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~   41 (212)
T cd02117           2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKAD   41 (212)
T ss_pred             EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            5788897799999999999999999999999999998853

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.55  E-value=0.00013  Score=73.15  Aligned_cols=59  Identities=15%  Similarity=0.155  Sum_probs=45.8

Q ss_pred             hhHHHHHHHhhc----c-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           19 REWSDAADSIAY----D-SNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        19 ~~W~~~~~~i~~----~-~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      +-|..+++.+..    . .....+.+|+++|+.|+||||++..|+.++...+.+|.++++|+..
T Consensus       218 ~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R  281 (436)
T PRK11889        218 EVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  281 (436)
T ss_pred             HHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence            356666665431    1 1112357999999999999999999999999999999999999765

>TIGR03453 partition_RepA plasmid partitioning protein RepA

Probab=97.53  E-value=0.00012  Score=73.73  Aligned_cols=42  Identities=31%  Similarity=0.315  Sum_probs=37.5

Q ss_pred             CCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           37 PPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        37 ~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ..+|.|.+.| |+||||+|..|+-.|.+.|++|++||+|| |+.
T Consensus       104 ~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~Dp-Q~~  146 (387)
T TIGR03453       104 LQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDP-QAS  146 (387)
T ss_pred             ceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC-CCC
Confidence            3577888787 89999999999999999999999999998 765

Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.53  E-value=0.00013  Score=68.80  Aligned_cols=58  Identities=28%  Similarity=0.297  Sum_probs=44.6

Q ss_pred             hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ...++++.+...  +....+|=|.|++|+|||||.-.|..++.++|.+|++|-.||..+-
T Consensus        14 ~~~~ll~~l~~~--~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~   71 (266)
T PF03308_consen   14 EARELLKRLYPH--TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPF   71 (266)
T ss_dssp             HHHHHHHHHGGG--TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGC
T ss_pred             HHHHHHHHHHhh--cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCC
Confidence            566777777632  2346899999999999999999999999999999999999997653

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=97.52  E-value=0.00016  Score=64.52  Aligned_cols=39  Identities=26%  Similarity=0.375  Sum_probs=37.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+.+|-+.|-.||||||++..|...|..+|+++++||.|
T Consensus        22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGD   60 (197)
T COG0529          22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGD   60 (197)
T ss_pred             CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecCh
Confidence            467999999999999999999999999999999999998

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=97.51  E-value=0.00033  Score=70.03  Aligned_cols=69  Identities=17%  Similarity=0.277  Sum_probs=53.6

Q ss_pred             CCCCCccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           10 NPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        10 ~~~~~~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ...-.+..|++|+.+.... .+..+...+.|-|+|.+|||||||+..|+..|-++|++|+++--|...-+
T Consensus       179 ~~~~nINTpeDl~~l~~~~-~~~~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h~~~  247 (366)
T PRK14489        179 DAFFNVNTPEDLEQLRAIP-DGTTTGAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSHHRVD  247 (366)
T ss_pred             cccccCCCHHHHHHHhhhh-hcccCCCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCcccC
Confidence            3567899999998876533 22222236799999999999999999999999999999999877654433

>PRK13705 plasmid-partitioning protein SopA; Provisional

Probab=97.50  E-value=0.00021  Score=71.95  Aligned_cols=42  Identities=29%  Similarity=0.324  Sum_probs=36.8

Q ss_pred             CCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcC-CCCCCC
Q 017141           37 PPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDT-DVGQPE   79 (376)
Q Consensus        37 ~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDl-D~GQ~~   79 (376)
                      ..+|.|+..| |+||||+|-.|+..|.+.|++|++||+ || |+.
T Consensus       106 ~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~Dp-Q~n  149 (388)
T PRK13705        106 PPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDP-QGT  149 (388)
T ss_pred             CeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCC-CCc
Confidence            4677788887 899999999999999999999999996 87 554

>PRK06762 hypothetical protein; Provisional

Probab=97.47  E-value=0.00013  Score=64.23  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=29.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|+|+|+.||||||+++.|++++   +..+.+++.|
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D   36 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQD   36 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHH
Confidence            3579999999999999999999987   3467777755

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.46  E-value=0.00024  Score=62.83  Aligned_cols=58  Identities=22%  Similarity=0.335  Sum_probs=39.3

Q ss_pred             hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        19 ~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      ++|+++.+.+. ......++.++|.|++|+||||+++.+..++.+.+.-+..++++...
T Consensus         7 ~e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~~   64 (185)
T PF13191_consen    7 EEIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDSE   64 (185)
T ss_dssp             HHHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETTT
T ss_pred             HHHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEeccc
Confidence            46777777774 22233578999999999999999999999998876558888888774

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.46  E-value=0.00016  Score=62.96  Aligned_cols=37  Identities=35%  Similarity=0.514  Sum_probs=33.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .|+|+|.+||||||+++.|..++...+.++.++|.|.
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~   37 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN   37 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence            3789999999999999999999988888888888775

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK06696 uridine kinase; Validated

Probab=97.45  E-value=0.0003  Score=65.27  Aligned_cols=39  Identities=31%  Similarity=0.357  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+..|.|.|+.||||||||+.|+..+-..|..+..+-+|
T Consensus        21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~D   59 (223)
T PRK06696         21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASID   59 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccc
Confidence            467999999999999999999999886666666665555

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=97.45  E-value=0.00021  Score=67.87  Aligned_cols=39  Identities=31%  Similarity=0.340  Sum_probs=35.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      +|.|.|--|+||||+|..|+-.|.++|++|+++|+||+.
T Consensus         2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~   40 (267)
T cd02032           2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKH   40 (267)
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            578889779999999999999999999999999999854

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>TIGR01287 nifH nitrogenase iron protein

Probab=97.44  E-value=0.00021  Score=68.19  Aligned_cols=41  Identities=24%  Similarity=0.255  Sum_probs=37.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .|.|.|--|+||||+|..|+-.|.++|++|+++|+||+.+.
T Consensus         2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~   42 (275)
T TIGR01287         2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADS   42 (275)
T ss_pred             eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence            47888977999999999999999999999999999999764

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.42  E-value=0.00022  Score=64.88  Aligned_cols=40  Identities=23%  Similarity=0.237  Sum_probs=36.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      ++..|.++|..||||||+++.|...+...|..+.++|.|.
T Consensus        23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~   62 (198)
T PRK03846         23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDN   62 (198)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEe
Confidence            4679999999999999999999999988888899999885

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.41  E-value=0.00021  Score=61.27  Aligned_cols=39  Identities=26%  Similarity=0.377  Sum_probs=35.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      ++|+|++|+||||+++.++..+...+..+.|++.+..-.
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~   40 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE   40 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence            789999999999999999999999899999999976543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=97.40  E-value=0.0004  Score=75.72  Aligned_cols=44  Identities=14%  Similarity=0.203  Sum_probs=39.3

Q ss_pred             CCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           36 PPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        36 ~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .+.+|+|++.+ |+||||++..|+-.+.+.|++|++||+|+.++.
T Consensus       545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~  589 (754)
T TIGR01005       545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAA  589 (754)
T ss_pred             CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchh
Confidence            35678888877 899999999999999999999999999999874

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=97.40  E-value=0.00024  Score=67.12  Aligned_cols=42  Identities=31%  Similarity=0.296  Sum_probs=36.7

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHH-HcCCcEEEEcCCCCCCC
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLL-QRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll-~~~~~v~~lDlD~GQ~~   79 (376)
                      .+|-|+..| |+||||++-.|+.+|. ..|++|+++|+||.++.
T Consensus         3 ~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s~   46 (259)
T COG1192           3 KIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSL   46 (259)
T ss_pred             EEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcchh
Confidence            467888888 8999999999999999 55599999999998653

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.40  E-value=0.00025  Score=55.31  Aligned_cols=33  Identities=33%  Similarity=0.510  Sum_probs=31.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      +++.|.+|+||||++..|+..+.+.|.+|.++|
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~   34 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID   34 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence            688999999999999999999999999999999

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.40  E-value=0.00037  Score=62.38  Aligned_cols=39  Identities=23%  Similarity=0.286  Sum_probs=33.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .+.+-|+|++|||||||++.|+..+-..+.+|..+--|.
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~   44 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH   44 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcC
Confidence            578999999999999999999999877788888876543

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.40  E-value=0.00023  Score=65.11  Aligned_cols=38  Identities=29%  Similarity=0.374  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .+.+|.|+|+.|||||||++.|...+  .+..+.+++.|.
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~   42 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDS   42 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCc
Confidence            46799999999999999999999986  445677887774

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.39  E-value=0.00032  Score=57.43  Aligned_cols=48  Identities=29%  Similarity=0.349  Sum_probs=40.7

Q ss_pred             EEEEcCC-CCcHHHHHHHHHHHHHHc-CCcEEEEcCCCCCCCCCCCceEEEEecccC
Q 017141           40 AFICGAK-NCGKTTFSRHLVNVLLQR-YKKVAYLDTDVGQPEFTAPGFLSLTVVDTL   94 (376)
Q Consensus        40 vlV~G~~-~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~   94 (376)
                      |.|+|.| |+||||.+..|+-.+.+. |++|.++|+|+.++.       ...+++.|
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~-------D~IIiDtp   51 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD-------DYVVVDLG   51 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC-------CEEEEeCC
Confidence            5677777 899999999999999998 999999999999886       45555553

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.38  E-value=0.00027  Score=65.07  Aligned_cols=52  Identities=19%  Similarity=0.234  Sum_probs=40.4

Q ss_pred             hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ...+.+......   ..+..++++|++|+||||+++.+++++.+.+.++.|+|++
T Consensus        24 ~~~~~l~~~~~~---~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~   75 (226)
T TIGR03420        24 ELLAALRQLAAG---KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA   75 (226)
T ss_pred             HHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence            355555554321   2356899999999999999999999998888888888875

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=97.38  E-value=0.00021  Score=64.25  Aligned_cols=36  Identities=31%  Similarity=0.361  Sum_probs=32.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .|.|+|+.||||||||+.|+..+-..+.++.++.+|
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~D   36 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLD   36 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehh
Confidence            378999999999999999999988778888888777

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PF13173 AAA_14: AAA domain

Probab=97.38  E-value=0.00024  Score=60.04  Aligned_cols=37  Identities=30%  Similarity=0.530  Sum_probs=31.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ++.++|.|++++||||+++.++..+. ...++.|+|+|
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~   38 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFD   38 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccC
Confidence            46899999999999999999999886 44567787776

>PRK13886 conjugal transfer protein TraL; Provisional

Probab=97.37  E-value=0.0003  Score=66.22  Aligned_cols=43  Identities=21%  Similarity=0.281  Sum_probs=37.7

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF   80 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~   80 (376)
                      .+++|+|+| |+||||+++.|+-++.+++.+|.++|+||.++.+
T Consensus         3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~   46 (241)
T PRK13886          3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATF   46 (241)
T ss_pred             eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchh
Confidence            456677555 9999999999999999999999999999998764

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=97.36  E-value=0.0003  Score=68.12  Aligned_cols=41  Identities=27%  Similarity=0.246  Sum_probs=37.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      +|.|.|--|+||||++-.|+-.|.+.|++|+++|+||+.+.
T Consensus         2 ~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~   42 (290)
T CHL00072          2 KLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDS   42 (290)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcc
Confidence            48899977999999999999999999999999999999654

>PRK11519 tyrosine kinase; Provisional

Probab=97.35  E-value=0.001  Score=72.16  Aligned_cols=59  Identities=22%  Similarity=0.266  Sum_probs=46.4

Q ss_pred             HHHHHHHhhcc----CCCCCCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           21 WSDAADSIAYD----SNTSPPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        21 W~~~~~~i~~~----~~~~~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ..+++..|..+    ....+..+|+|++.+ |.||||++..|+..+...|.+|.+||+|+..+.
T Consensus       506 ~~Ea~r~lrt~l~~~~~~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~  569 (719)
T PRK11519        506 AIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGY  569 (719)
T ss_pred             HHHHHHHHHHHhhhhccCCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCc
Confidence            55566555321    122346789999955 999999999999999999999999999998875

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.34  E-value=0.00022  Score=64.59  Aligned_cols=34  Identities=29%  Similarity=0.416  Sum_probs=29.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      |.|+|+.|||||||++.|.+.+  .+.++.++.+|-
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~   35 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDS   35 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecc
Confidence            7899999999999999999987  556788888884

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK05439 pantothenate kinase; Provisional

Probab=97.34  E-value=0.00053  Score=66.90  Aligned_cols=54  Identities=28%  Similarity=0.281  Sum_probs=36.6

Q ss_pred             HHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEcCC
Q 017141           21 WSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTD   74 (376)
Q Consensus        21 W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~lDlD   74 (376)
                      +..++..+......+.+..|.|.|+.||||||+|+.|...+-+.  +.+|.++.+|
T Consensus        70 ~~~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~D  125 (311)
T PRK05439         70 LQAALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTD  125 (311)
T ss_pred             HHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecc
Confidence            44444444321223346789999999999999999999866442  4567766665

>PRK13232 nifH nitrogenase reductase; Reviewed

Probab=97.34  E-value=0.00032  Score=66.94  Aligned_cols=41  Identities=22%  Similarity=0.222  Sum_probs=37.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      +|-|+|--|+||||++-.|+-.|.+.|++|.++|+||+.+.
T Consensus         3 ~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~   43 (273)
T PRK13232          3 QIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADS   43 (273)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEeccccccc
Confidence            56677877999999999999999999999999999999775

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=97.33  E-value=0.00032  Score=66.65  Aligned_cols=39  Identities=26%  Similarity=0.267  Sum_probs=35.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      +|.|.|--|+||||+|-.|+-.|.+.|++|+++|+||+-
T Consensus         2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~   40 (268)
T TIGR01281         2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKH   40 (268)
T ss_pred             EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence            466778669999999999999999999999999999963

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=97.33  E-value=0.0056  Score=58.55  Aligned_cols=42  Identities=31%  Similarity=0.437  Sum_probs=36.5

Q ss_pred             CEEEE-EcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           38 PIAFI-CGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        38 ~~vlV-~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .+|+| .|..|.||||.+..|+.-+.+.|++|.++|+|...+.
T Consensus        58 ~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps  100 (265)
T COG0489          58 NVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPS  100 (265)
T ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCc
Confidence            34555 4556999999999999999999999999999998876

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.33  E-value=0.00035  Score=63.75  Aligned_cols=39  Identities=33%  Similarity=0.399  Sum_probs=36.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+..++|+|++|||||+||..++..+.+.+.+|+|+|++
T Consensus        11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e   49 (209)
T TIGR02237        11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE   49 (209)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            477999999999999999999999998899999999997

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK07261 topology modulation protein; Provisional

Probab=97.32  E-value=0.00021  Score=63.73  Aligned_cols=24  Identities=29%  Similarity=0.337  Sum_probs=21.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+|+|+|+.|||||||++.|+..+
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHh
Confidence            379999999999999999998764

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.31  E-value=0.00026  Score=62.97  Aligned_cols=36  Identities=36%  Similarity=0.506  Sum_probs=31.0

Q ss_pred             EEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           40 AFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        40 vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      |.|.++| |+||||++..|+-.+    .+|+++|+|++.+.
T Consensus         2 I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~   38 (179)
T cd03110           2 IAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPN   38 (179)
T ss_pred             EEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCc
Confidence            5555555 999999999999988    68999999999876

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.31  E-value=0.00066  Score=73.29  Aligned_cols=39  Identities=26%  Similarity=0.319  Sum_probs=34.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHH-HcC-CcEEEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLL-QRY-KKVAYLDTDV   75 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll-~~~-~~v~~lDlD~   75 (376)
                      +.+|+++|+.|+||||.+..|+.++. +.| ++|.++++|.
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt  225 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDS  225 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcc
Confidence            56899999999999999999999884 555 5899999995

>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments

Probab=97.30  E-value=0.00022  Score=66.98  Aligned_cols=41  Identities=34%  Similarity=0.462  Sum_probs=30.5

Q ss_pred             EEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141           40 AFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF   80 (376)
Q Consensus        40 vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~   80 (376)
                      |+|..+| |+||||.+-.|+-.|+++|.+|.++|+|..|+.+
T Consensus         3 IvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~   44 (261)
T PF09140_consen    3 IVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSL   44 (261)
T ss_dssp             EEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HH
T ss_pred             EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCH
Confidence            4444444 8999999999999999999999999999999864

Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.30  E-value=0.00055  Score=66.24  Aligned_cols=40  Identities=35%  Similarity=0.395  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~lDlD~   75 (376)
                      .+..|.|+|+.|||||||+|.|...+-+.  +.+|.++.+|-
T Consensus        61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~  102 (290)
T TIGR00554        61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG  102 (290)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence            46788999999999999999998776432  34567766664

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.30  E-value=0.00018  Score=61.23  Aligned_cols=32  Identities=25%  Similarity=0.577  Sum_probs=27.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .|+++|++|||||||++.|+..+     ...+++.|-
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~-----~~~~i~~D~   32 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRL-----GAVVISQDE   32 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHS-----TEEEEEHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHC-----CCEEEeHHH
Confidence            48999999999999999998775     367788775

...

>PRK10037 cell division protein; Provisional

Probab=97.30  E-value=0.00034  Score=65.94  Aligned_cols=38  Identities=21%  Similarity=0.183  Sum_probs=35.3

Q ss_pred             EEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           39 IAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        39 ~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      +|.|++.| |+||||+|..|+-.|.++|++|++||+|+.
T Consensus         3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q   41 (250)
T PRK10037          3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPD   41 (250)
T ss_pred             EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChh
Confidence            67888888 899999999999999999999999999994

>PRK06217 hypothetical protein; Validated

Probab=97.30  E-value=0.00022  Score=64.05  Aligned_cols=32  Identities=38%  Similarity=0.467  Sum_probs=27.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+|+|+|..||||||+++.|+..+     ..-++|+|
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l-----~~~~~~~D   33 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERL-----DIPHLDTD   33 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc-----CCcEEEcC
Confidence            379999999999999999999886     34477777

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=97.29  E-value=0.00046  Score=61.00  Aligned_cols=49  Identities=35%  Similarity=0.339  Sum_probs=41.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCce
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGF   85 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~   85 (376)
                      .+.+-|+|.+|||||||+.-|+..|..+|++|+++--+....++..||.
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~~~~D~~Gk   50 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLDKPGK   50 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCCCCCCCCCCC
Confidence            3578899999999999999999999999999999877666555555554

>PRK13235 nifH nitrogenase reductase; Reviewed

Probab=97.28  E-value=0.00042  Score=66.19  Aligned_cols=41  Identities=27%  Similarity=0.223  Sum_probs=37.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      +|.|+|--|+||||+|-.|+-.|.+.|++|.++|+||+.+.
T Consensus         3 ~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~   43 (274)
T PRK13235          3 KVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADS   43 (274)
T ss_pred             EEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccc
Confidence            56777766999999999999999999999999999999764

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.28  E-value=0.00036  Score=71.10  Aligned_cols=58  Identities=22%  Similarity=0.219  Sum_probs=43.8

Q ss_pred             hHHHHHHHhhc----cC--CCCCCCEEEEEcCCCCcHHHHHHHHHHHHH--HcCCcEEEEcCCCCC
Q 017141           20 EWSDAADSIAY----DS--NTSPPPIAFICGAKNCGKTTFSRHLVNVLL--QRYKKVAYLDTDVGQ   77 (376)
Q Consensus        20 ~W~~~~~~i~~----~~--~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll--~~~~~v~~lDlD~GQ   77 (376)
                      .|..+.+.+..    ..  ....+.+++++|+.|+||||++..|+.++.  +.+.+|+++|+|+.+
T Consensus       198 ~~~~~~~~L~~~l~~~~~~~~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r  263 (424)
T PRK05703        198 AWRYLLELLANMIPVRVEDILKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR  263 (424)
T ss_pred             HHHHHHHHHHHHhCccccccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence            56666665532    00  112356899999999999999999999886  567899999999864

>PRK03839 putative kinase; Provisional

Probab=97.25  E-value=0.00027  Score=63.04  Aligned_cols=31  Identities=39%  Similarity=0.510  Sum_probs=27.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +|+|+|+.||||||+++.|++.+     ...++|+|
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~-----~~~~id~d   32 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKL-----GYEYVDLT   32 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCcEEehh
Confidence            69999999999999999999987     45677776

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.24  E-value=0.00039  Score=70.33  Aligned_cols=42  Identities=29%  Similarity=0.293  Sum_probs=36.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH-HHcCCcEEEEcCCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL-LQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l-l~~~~~v~~lDlD~GQ~   78 (376)
                      +.+++|+|+.||||||++..|+.++ ++.|.+|.++++|+...
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~  265 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI  265 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence            4579999999999999999999765 67889999999998654

>cd01394 radB RadB

Probab=97.24  E-value=0.00048  Score=63.34  Aligned_cols=52  Identities=25%  Similarity=0.275  Sum_probs=41.7

Q ss_pred             HHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           24 AADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        24 ~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      .+|.+...+ -..+..++|.|++|+||||||..++..+...+.+|+|+|.|-.
T Consensus         7 ~LD~~l~GG-i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~   58 (218)
T cd01394           7 GLDELLGGG-VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL   58 (218)
T ss_pred             HHHHHhcCC-ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence            455554322 2347789999999999999999999999999999999997643

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.24  E-value=0.00036  Score=65.78  Aligned_cols=36  Identities=33%  Similarity=0.513  Sum_probs=32.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      |+++|..||||||+++.|+.++-..+.++.+++.|.
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~   37 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL   37 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH
Confidence            789999999999999999999877788888887774

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring

Probab=97.24  E-value=0.00051  Score=67.60  Aligned_cols=45  Identities=22%  Similarity=0.226  Sum_probs=41.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ++.++|+|+|-.|+||||++..|+..+.++|++|.++|+|+.++.
T Consensus        29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~   73 (329)
T cd02033          29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDT   73 (329)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccc
Confidence            456789999999999999999999999999999999999999865

This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.

>PRK13949 shikimate kinase; Provisional

Probab=97.23  E-value=0.00027  Score=62.93  Aligned_cols=31  Identities=32%  Similarity=0.580  Sum_probs=27.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +|+|+|+.||||||++|.|++.+     ..-++|+|
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l-----~~~~id~D   33 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAREL-----GLSFIDLD   33 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc-----CCCeeccc
Confidence            69999999999999999999987     45688887

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.22  E-value=0.00039  Score=64.57  Aligned_cols=35  Identities=31%  Similarity=0.364  Sum_probs=27.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHH--cCCcEEEEcCC
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQ--RYKKVAYLDTD   74 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~--~~~~v~~lDlD   74 (376)
                      |.|+|+.|||||||++.|++.+-.  .+.++.++.+|
T Consensus         2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D   38 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTD   38 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecC
Confidence            679999999999999999998753  34456666655

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK15453 phosphoribulokinase; Provisional

Probab=97.21  E-value=0.00051  Score=65.96  Aligned_cols=40  Identities=23%  Similarity=0.380  Sum_probs=34.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .++.|.|+|.+||||||+++.|+..+-+.+.++.+++.|-
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~   43 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDS   43 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccc
Confidence            4789999999999999999999987766666788998884

>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

Probab=97.21  E-value=0.00054  Score=63.33  Aligned_cols=40  Identities=30%  Similarity=0.314  Sum_probs=38.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      +++.|..|+||||++..|+-++.+.|+++.++|+|+.++.
T Consensus         2 ~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~   41 (217)
T cd02035           2 IFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNL   41 (217)
T ss_pred             EEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCccc
Confidence            6889999999999999999999999999999999999974

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=97.21  E-value=0.00061  Score=61.06  Aligned_cols=40  Identities=25%  Similarity=0.313  Sum_probs=35.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .+..+.++|.+|+||||+++.|...+...+..+.++|.|.
T Consensus        17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~   56 (184)
T TIGR00455        17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDN   56 (184)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChH
Confidence            4789999999999999999999999877777788888764

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.21  E-value=0.00044  Score=57.51  Aligned_cols=22  Identities=36%  Similarity=0.582  Sum_probs=21.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 017141           40 AFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      |++.|++|+||||+++.+++++
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999999997

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.20  E-value=0.00061  Score=63.00  Aligned_cols=50  Identities=28%  Similarity=0.313  Sum_probs=41.6

Q ss_pred             HHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           24 AADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        24 ~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      -+|.+..++ -..+..++|.|+.|+||||||..++..+++.+.+|+|+|++
T Consensus        11 ~lD~~l~GG-i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e   60 (225)
T PRK09361         11 MLDELLGGG-FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE   60 (225)
T ss_pred             HHHHHhcCC-CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            455555333 23477999999999999999999999999999999999998

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.19  E-value=0.00039  Score=62.97  Aligned_cols=29  Identities=34%  Similarity=0.456  Sum_probs=25.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKK   67 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~   67 (376)
                      .|.|+|+.||||||||+.|...|-+.+..
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~   29 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence            48899999999999999999998665544

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>TIGR02016 BchX chlorophyllide reductase iron protein subunit X

Probab=97.19  E-value=0.00059  Score=66.24  Aligned_cols=41  Identities=24%  Similarity=0.289  Sum_probs=37.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      +|.|.|--|+||||.+-.|+-.|.++|++|.++|+||+.+.
T Consensus         2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~   42 (296)
T TIGR02016         2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDS   42 (296)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCc
Confidence            56677888999999999999999999999999999998764

This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.18  E-value=0.00097  Score=69.23  Aligned_cols=60  Identities=18%  Similarity=0.176  Sum_probs=46.1

Q ss_pred             ChhHHHHHHHhhcc------CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEcCCCCC
Q 017141           18 PREWSDAADSIAYD------SNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTDVGQ   77 (376)
Q Consensus        18 p~~W~~~~~~i~~~------~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~lDlD~GQ   77 (376)
                      .+.|..+.+.|...      .....+.+|+|+|+.|+||||++..|+.++...  +.+|.++++|...
T Consensus       325 ~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR  392 (559)
T PRK12727        325 HRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR  392 (559)
T ss_pred             hhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence            45687777766431      111246899999999999999999999988765  4689999999753

>PHA02519 plasmid partition protein SopA; Reviewed

Probab=97.17  E-value=0.001  Score=66.94  Aligned_cols=64  Identities=17%  Similarity=0.141  Sum_probs=44.4

Q ss_pred             ccCCh--hHHHHHHHhhccCCCCCCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcC-CCCCCC
Q 017141           15 IYIPR--EWSDAADSIAYDSNTSPPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDT-DVGQPE   79 (376)
Q Consensus        15 ~~ip~--~W~~~~~~i~~~~~~~~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDl-D~GQ~~   79 (376)
                      +.+.+  +|.+.+.....-....+..+|.|+..| |+||||.+-.|+-+|...|++|++||+ || |+.
T Consensus        82 ytl~eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~Dp-Q~n  149 (387)
T PHA02519         82 YTIDQISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDP-QGT  149 (387)
T ss_pred             EcHHHHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCC-CCC
Confidence            44444  466655432110011123567788887 899999999999999999999999997 77 544

>PRK00131 aroK shikimate kinase; Reviewed

Probab=97.17  E-value=0.00041  Score=60.79  Aligned_cols=34  Identities=32%  Similarity=0.487  Sum_probs=29.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ++..|+++|+.||||||+++.|+..+     ...++|.|
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l-----~~~~~d~d   36 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRL-----GYDFIDTD   36 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHh-----CCCEEECh
Confidence            46789999999999999999999997     45567776

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=97.17  E-value=0.00097  Score=61.73  Aligned_cols=39  Identities=18%  Similarity=0.299  Sum_probs=35.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      ..-++++|++|+|||+|++.+++.+.+.+..+.+++++-
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~   80 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS   80 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence            567999999999999999999999999999999998854

>COG4240 Predicted kinase [General function prediction only]

Probab=97.17  E-value=0.00081  Score=62.32  Aligned_cols=55  Identities=27%  Similarity=0.269  Sum_probs=42.9

Q ss_pred             hHHHHHHHhhcc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcC-CcEEEEcCC
Q 017141           20 EWSDAADSIAYD-SNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRY-KKVAYLDTD   74 (376)
Q Consensus        20 ~W~~~~~~i~~~-~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~-~~v~~lDlD   74 (376)
                      -|...+++|+.- ..+..+..+-|+||.||||||++-.|.+.|.++| ++++.+.+|
T Consensus        32 l~Lpll~Kiap~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLD   88 (300)
T COG4240          32 LHLPLLAKIAPWAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLD   88 (300)
T ss_pred             HHHHHHHhhhhhhhhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehh
Confidence            356666665421 1234477999999999999999999999999988 688888776

>PRK13233 nifH nitrogenase reductase; Reviewed

Probab=97.17  E-value=0.00064  Score=64.88  Aligned_cols=42  Identities=21%  Similarity=0.157  Sum_probs=36.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHH-cCCcEEEEcCCCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQ-RYKKVAYLDTDVGQPE   79 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~-~~~~v~~lDlD~GQ~~   79 (376)
                      .+|.|+|--|+||||++..|+..|.+ .|++|+++|+||+-+.
T Consensus         3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~   45 (275)
T PRK13233          3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADS   45 (275)
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcCh
Confidence            46777776699999999999999997 5999999999999754

>PRK06547 hypothetical protein; Provisional

Probab=97.14  E-value=0.00052  Score=61.39  Aligned_cols=26  Identities=27%  Similarity=0.244  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ....|+|.|+.||||||+++.|++.+
T Consensus        14 ~~~~i~i~G~~GsGKTt~a~~l~~~~   39 (172)
T PRK06547         14 GMITVLIDGRSGSGKTTLAGALAART   39 (172)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999999873

>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon

Probab=97.14  E-value=0.0007  Score=63.76  Aligned_cols=41  Identities=27%  Similarity=0.271  Sum_probs=38.1

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      ++|.|+|.| |+||||++.-|+-.|.+.|++|..||+||-.-
T Consensus         2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~   43 (243)
T PF06564_consen    2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNL   43 (243)
T ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHH
Confidence            589999999 89999999999999999999999999998654

It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>PRK14530 adenylate kinase; Provisional

Probab=97.13  E-value=0.0005  Score=63.33  Aligned_cols=25  Identities=32%  Similarity=0.450  Sum_probs=23.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +++|+|+|++||||||+++.|+.++
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~   27 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEF   27 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999999876

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=97.13  E-value=0.00084  Score=70.85  Aligned_cols=65  Identities=22%  Similarity=0.291  Sum_probs=47.4

Q ss_pred             CCCCCccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH-cCCcEEEEcCCCC
Q 017141           10 NPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ-RYKKVAYLDTDVG   76 (376)
Q Consensus        10 ~~~~~~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~-~~~~v~~lDlD~G   76 (376)
                      .+..-+.-|+-|+.+.+.-.  .+...+..|+++|..||||||++|.|+.++-. .+..+.++|.|.-
T Consensus       367 ~pP~~f~rpeV~~iL~~~~~--~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v  432 (568)
T PRK05537        367 EIPEWFSFPEVVAELRRTYP--PRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV  432 (568)
T ss_pred             CCChhhcHHHHHHHHHHHhc--cccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence            34444555666774443332  23345779999999999999999999999876 7778999999943

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.08  E-value=0.00071  Score=64.51  Aligned_cols=37  Identities=19%  Similarity=0.245  Sum_probs=33.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      |.|+|++||||||+++.|...+-+.+.++++++.|--
T Consensus         2 IgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~y   38 (277)
T cd02029           2 IAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSF   38 (277)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccc
Confidence            7899999999999999999998777888999999843

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.07  E-value=0.0009  Score=62.72  Aligned_cols=39  Identities=18%  Similarity=0.301  Sum_probs=35.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      ++.++++||.|+|||+|++.++|++.+.+.++.|+.+|-
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            468999999999999999999999998899999998863

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.06  E-value=0.0014  Score=63.00  Aligned_cols=56  Identities=25%  Similarity=0.259  Sum_probs=46.3

Q ss_pred             HHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           22 SDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        22 ~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .+++..+..  .+....+|=|.|.+|+|||||.--|...+.+.|.+|+++-.||..+-
T Consensus        38 ~~ll~~l~p--~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~   93 (323)
T COG1703          38 RELLRALYP--RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF   93 (323)
T ss_pred             HHHHHHHhh--cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC
Confidence            344555542  23457899999999999999999999999999999999999998764

>PRK00625 shikimate kinase; Provisional

Probab=97.06  E-value=0.00052  Score=61.45  Aligned_cols=31  Identities=39%  Similarity=0.830  Sum_probs=27.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .|+++|..||||||+++.|++++     ..-++|+|
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l-----~~~~id~D   32 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFL-----SLPFFDTD   32 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCCEEEhh
Confidence            58999999999999999999987     45678887

>PRK08233 hypothetical protein; Provisional

Probab=97.06  E-value=0.00066  Score=60.13  Aligned_cols=36  Identities=31%  Similarity=0.382  Sum_probs=28.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|.|.|++||||||||+.|+..+-  ...+..+|.+
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~   38 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRY   38 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCE
Confidence            46899999999999999999998762  2356666665

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.06  E-value=0.00052  Score=56.32  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      ||+|+|++|||||||.+.|++.-.
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~   24 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEF   24 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCC
Confidence            699999999999999999987653

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.06  E-value=0.00087  Score=59.62  Aligned_cols=38  Identities=24%  Similarity=0.368  Sum_probs=34.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      ++|.|++|+|||+|+..++...++.|.+|.|+.++-..
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~   39 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESP   39 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCH
Confidence            79999999999999999999999999999999987543

A related protein is found in archaea.

>PRK13234 nifH nitrogenase reductase; Reviewed

Probab=97.04  E-value=0.0011  Score=64.38  Aligned_cols=42  Identities=19%  Similarity=0.208  Sum_probs=37.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .+|.|.|--|+||||.+..|+-.|.+.|++|+++|+||+.+.
T Consensus         5 ~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~   46 (295)
T PRK13234          5 RQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADS   46 (295)
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccccccc
Confidence            456666777999999999999999999999999999998765

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.04  E-value=0.00086  Score=67.46  Aligned_cols=41  Identities=17%  Similarity=0.210  Sum_probs=36.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHH----cCCcEEEEcCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQ----RYKKVAYLDTDVGQ   77 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~----~~~~v~~lDlD~GQ   77 (376)
                      +..|+++|+.|+||||.+.-|++++..    .+.+|.++++|+..
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R  218 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR  218 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence            568999999999999999999998863    47899999999753

>PRK13231 nitrogenase reductase-like protein; Reviewed

Probab=97.04  E-value=0.00045  Score=65.50  Aligned_cols=40  Identities=18%  Similarity=0.165  Sum_probs=35.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      .+|.|.|--|+||||+|..|+-.|.+.| +|+++|+||+-+
T Consensus         3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~   42 (264)
T PRK13231          3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKAD   42 (264)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcc
Confidence            3677777669999999999999999999 999999999854

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.03  E-value=0.0025  Score=58.38  Aligned_cols=109  Identities=23%  Similarity=0.330  Sum_probs=70.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSS  117 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~sp  117 (376)
                      |-|++.|.+|||||||++-|+.-|-.+++.|+.+.-|-.-.          ...++-   +  |-.    .         
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~----------i~~DEs---l--pi~----k---------   53 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRG----------ILWDES---L--PIL----K---------   53 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhh----------eecccc---c--chH----H---------
Confidence            46899999999999999999999988888887766652111          011110   0  000    0         


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccccccHHHHHHHHHHhCCCEEEEEec
Q 017141          118 KRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKINI  188 (376)
Q Consensus       118 ~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~G~~ll~~~i~~~~p~~Vv~l~~  188 (376)
                      +.--+.+...+.++++..              ....-+|+|.--+++|+-++|..+.-+.-.+-.||++..
T Consensus        54 e~yres~~ks~~rlldSa--------------lkn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~  110 (261)
T COG4088          54 EVYRESFLKSVERLLDSA--------------LKNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRT  110 (261)
T ss_pred             HHHHHHHHHHHHHHHHHH--------------hcceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEcc
Confidence            001123333344443322              134568999999999999999988877777766777654

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.03  E-value=0.00055  Score=61.56  Aligned_cols=23  Identities=30%  Similarity=0.521  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|+|+|++||||||+|+.|++++
T Consensus         2 riiilG~pGaGK~T~A~~La~~~   24 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKL   24 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            79999999999999999999983

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=97.02  E-value=0.00062  Score=58.68  Aligned_cols=31  Identities=26%  Similarity=0.480  Sum_probs=25.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      ++++|+.||||||+++.|.+.+     ...++|.|.
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~   32 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERL-----GAPFIDGDD   32 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcc
Confidence            7899999999999999999874     345677764

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=97.01  E-value=0.00053  Score=60.05  Aligned_cols=31  Identities=23%  Similarity=0.416  Sum_probs=25.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      |+++|+.||||||+++.|.+.+     ...++|.|-
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l-----~~~~v~~D~   31 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRL-----GAKFIEGDD   31 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhc-----CCeEEeCcc
Confidence            4789999999999999999986     245677764

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK09183 transposase/IS protein; Provisional

Probab=97.01  E-value=0.0014  Score=62.33  Aligned_cols=38  Identities=18%  Similarity=0.160  Sum_probs=34.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      .+..++++|++|+|||+|+..|++.+...|++|.|+++
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~  138 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA  138 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence            36689999999999999999999999999999999873

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.01  E-value=0.0012  Score=61.63  Aligned_cols=41  Identities=27%  Similarity=0.408  Sum_probs=35.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      .+..++|.|+.|+||||||..++..+++.+.++.|++.+-.
T Consensus        23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~   63 (230)
T PRK08533         23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLT   63 (230)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            46799999999999999987777778888999999987644

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.99  E-value=0.001  Score=68.56  Aligned_cols=40  Identities=30%  Similarity=0.312  Sum_probs=35.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHH-HcC-CcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLL-QRY-KKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll-~~~-~~v~~lDlD~   75 (376)
                      .+.+++++|++|+||||++..|+.++. +.| .+|.++++|+
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt  296 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS  296 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence            367999999999999999999999985 455 4899999996

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=96.99  E-value=0.00076  Score=60.13  Aligned_cols=34  Identities=29%  Similarity=0.554  Sum_probs=29.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      ..+|+++|+.|+||||+++.|++.+     ..-++|+|-
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l-----~~~~vd~D~   37 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQL-----NMEFYDSDQ   37 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHc-----CCcEEECCc
Confidence            3579999999999999999999986     455788884

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=96.98  E-value=0.00088  Score=66.19  Aligned_cols=37  Identities=32%  Similarity=0.426  Sum_probs=33.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEEcCCCC
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYLDTDVG   76 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll-~~~~~v~~lDlD~G   76 (376)
                      +.++|..|+||||+++.|.+++. ..|++|+++|.|--
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~   39 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDI   39 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccc
Confidence            47899999999999999999997 58999999999943

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.96  E-value=0.0031  Score=56.77  Aligned_cols=50  Identities=14%  Similarity=0.086  Sum_probs=37.7

Q ss_pred             cCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141           16 YIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL   71 (376)
Q Consensus        16 ~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l   71 (376)
                      .+++++.+.+.....     .+..++|+|+.||||||+.+.|+..+- ...+++.+
T Consensus         9 ~~~~~~~~~l~~~v~-----~g~~i~I~G~tGSGKTTll~aL~~~i~-~~~~~i~i   58 (186)
T cd01130           9 TFSPLQAAYLWLAVE-----ARKNILISGGTGSGKTTLLNALLAFIP-PDERIITI   58 (186)
T ss_pred             CCCHHHHHHHHHHHh-----CCCEEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEE
Confidence            467788888876543     256899999999999999999998753 33444444

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK11670 antiporter inner membrane protein; Provisional

Probab=96.95  E-value=0.0014  Score=65.60  Aligned_cols=42  Identities=29%  Similarity=0.356  Sum_probs=37.3

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .+|.|..+| |+||||++-.|+-.|.+.|++|.++|+|+.-+.
T Consensus       108 ~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps  150 (369)
T PRK11670        108 NIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPS  150 (369)
T ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            466676666 899999999999999999999999999999875

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=96.95  E-value=0.0017  Score=61.70  Aligned_cols=58  Identities=21%  Similarity=0.267  Sum_probs=41.6

Q ss_pred             cCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           16 YIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        16 ~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .+++.|.+.+.....     .+..|+|+|+.||||||+.+.|+.++-....++..++ |+..-.
T Consensus       111 ~~~~~~~~~l~~~v~-----~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE-d~~E~~  168 (270)
T PF00437_consen  111 SIPEEIAEFLRSAVR-----GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE-DPPELR  168 (270)
T ss_dssp             HCHHHHHHHHHHCHH-----TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE-SSS-S-
T ss_pred             hhHHHHHHHHhhccc-----cceEEEEECCCccccchHHHHHhhhccccccceEEec-ccccee
Confidence            345667777765432     1468999999999999999999998765547788877 544333

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK05642 DNA replication initiation factor; Validated

Probab=96.94  E-value=0.0016  Score=61.05  Aligned_cols=37  Identities=16%  Similarity=0.310  Sum_probs=34.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ..++++|+.|+|||.|++.++|++.+++.+|.|++++
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~   82 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA   82 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence            5688999999999999999999999888999998875

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.94  E-value=0.0014  Score=61.07  Aligned_cols=39  Identities=31%  Similarity=0.439  Sum_probs=36.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+..++|.|+.|+|||||+..++...++.+.+|+|++++
T Consensus        24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e   62 (234)
T PRK06067         24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE   62 (234)
T ss_pred             CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence            477999999999999999999998888899999999996

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=96.94  E-value=0.0013  Score=62.67  Aligned_cols=39  Identities=15%  Similarity=0.267  Sum_probs=36.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+..++|.|++|+||||||..++-..+++|.+++|++++
T Consensus        35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E   73 (259)
T TIGR03878        35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE   73 (259)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            467999999999999999999988888889999999997

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]

Probab=96.93  E-value=0.0089  Score=57.08  Aligned_cols=43  Identities=26%  Similarity=0.336  Sum_probs=33.8

Q ss_pred             CEEEEE-cCCCCcHHHHHHHHHHHHHHcCC-cEEEEcCCCCCCCC
Q 017141           38 PIAFIC-GAKNCGKTTFSRHLVNVLLQRYK-KVAYLDTDVGQPEF   80 (376)
Q Consensus        38 ~~vlV~-G~~~sGKSTl~r~L~N~ll~~~~-~v~~lDlD~GQ~~~   80 (376)
                      ..|-|. |--|+||||++-.|...+++.+. +|+++|+|+|-+.+
T Consensus         3 ~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL   47 (262)
T COG0455           3 KVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNL   47 (262)
T ss_pred             EEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcH
Confidence            356666 55589999999999777776554 55999999998874

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.92  E-value=0.0013  Score=61.20  Aligned_cols=39  Identities=28%  Similarity=0.298  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE-EcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY-LDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~-lDlD   74 (376)
                      .+..|.|+|+.|||||||++.|++.+-..+..+.+ +.+|
T Consensus        32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D   71 (229)
T PRK09270         32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMD   71 (229)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecc
Confidence            46799999999999999999999998776666655 5555

>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D

Probab=96.92  E-value=0.0015  Score=56.36  Aligned_cols=41  Identities=32%  Similarity=0.421  Sum_probs=34.1

Q ss_pred             EEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           39 IAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        39 ~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .|.|+|++ |+||||++..|+..+.+.+++|+++|+|...+.
T Consensus         2 ~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~   43 (157)
T PF13614_consen    2 VIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPS   43 (157)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-H
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCC
Confidence            58899966 999999999999999999999999999998874

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=96.92  E-value=0.003  Score=61.42  Aligned_cols=51  Identities=22%  Similarity=0.412  Sum_probs=36.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEcCCCCCCCCCCCceEEE
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTDVGQPEFTAPGFLSL   88 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~lDlD~GQ~~~~~PG~vSl   88 (376)
                      +..++|+|+.|||||||++.|++++-..  ..++..++ |+..-.+..|..+.+
T Consensus       132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiE-d~~El~~~~~~~v~~  184 (299)
T TIGR02782       132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIE-DTRELQCAAPNVVQL  184 (299)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEEC-CchhhcCCCCCEEEE
Confidence            4579999999999999999999987653  56677776 544433333444444

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK06893 DNA replication initiation factor; Validated

Probab=96.91  E-value=0.0025  Score=59.43  Aligned_cols=38  Identities=24%  Similarity=0.467  Sum_probs=35.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+.++++|++|+|||+|++.++|.+.+++.++.|++++
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            56789999999999999999999999999999999885

>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA)

Probab=96.90  E-value=0.0015  Score=62.04  Aligned_cols=39  Identities=33%  Similarity=0.353  Sum_probs=36.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      .+++.|..|+||||.+..|+..+.+.|++|.++|+|+..
T Consensus         2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~   40 (254)
T cd00550           2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH   40 (254)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence            578889999999999999999999999999999999964

This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=96.90  E-value=0.002  Score=55.23  Aligned_cols=41  Identities=32%  Similarity=0.433  Sum_probs=35.2

Q ss_pred             EEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCC
Q 017141           41 FICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFT   81 (376)
Q Consensus        41 lV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~   81 (376)
                      +.-|..|+||||++..|+-++..+|.++.++|+|++++.+.
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~   44 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD   44 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCC
Confidence            44556699999999999999999999999999999776543

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=96.89  E-value=0.0026  Score=62.15  Aligned_cols=84  Identities=13%  Similarity=0.088  Sum_probs=50.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEeccc-CCCCCCCCCCCCCceeEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDT-LTPDLTIPCLKTPKRCYFFGDV  115 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~-~~~~~~~~~~~~p~~~~f~G~~  115 (376)
                      ++.|+|+||+||||||++..|+..+     ...++++|--|--...+      +.+. |.++-    . .-...||++..
T Consensus         4 ~~~i~i~GptgsGKt~la~~la~~~-----~~~iis~Ds~Qvy~~l~------i~Takp~~~E----~-~gv~hhlid~~   67 (307)
T PRK00091          4 PKVIVIVGPTASGKTALAIELAKRL-----NGEIISADSMQVYRGMD------IGTAKPTAEE----R-AGVPHHLIDIL   67 (307)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHhC-----CCcEEeccccceeeccc------ccCCCCCHHH----H-cCccEEeeccc
Confidence            4689999999999999999998875     34567777554321111      1111 11110    0 11235899988


Q ss_pred             CCCC--ChHHHHHHHHHHHHHHH
Q 017141          116 SSKR--DPTAYLKYITTLYDYYR  136 (376)
Q Consensus       116 sp~~--~~~~y~~~v~~L~~~~~  136 (376)
                      +|.+  +...|.+.+.+.++...
T Consensus        68 ~~~~~~s~~~f~~~a~~~i~~i~   90 (307)
T PRK00091         68 DPTESYSVADFQRDALAAIADIL   90 (307)
T ss_pred             ChhhcccHHHHHHHHHHHHHHHH
Confidence            8865  35566666665555443

>PLN02748 tRNA dimethylallyltransferase

Probab=96.88  E-value=0.0039  Score=64.11  Aligned_cols=99  Identities=15%  Similarity=0.205  Sum_probs=60.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEeccc-CCCCCCCCCCCCCceeEEcC
Q 017141           35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDT-LTPDLTIPCLKTPKRCYFFG  113 (376)
Q Consensus        35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~-~~~~~~~~~~~~p~~~~f~G  113 (376)
                      ..++.|+|+|++|||||||+..|+..+     ..-++++|--|===+.      -+.+. |... .  .-.-  ..|++|
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~-----~~eii~~DsmQVYrgL------dIgTaKpt~e-E--~~~V--pHHLid   83 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHF-----PVEIINADSMQVYSGL------DVLTNKVPLH-E--QKGV--PHHLLG   83 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhc-----CeeEEcCchheeeCCc------chhcCCCCHH-H--HcCC--CCeeEe
Confidence            346789999999999999999998775     4568888854321000      01111 1000 0  0011  248899


Q ss_pred             CCCCCC--ChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCC
Q 017141          114 DVSSKR--DPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPG  161 (376)
Q Consensus       114 ~~sp~~--~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~G  161 (376)
                      ..+|..  +...|...+.++++.+..+            ...|+||=-.|
T Consensus        84 ~v~p~e~ysv~~F~~~A~~~I~~I~~r------------gk~PIlVGGTg  121 (468)
T PLN02748         84 VISPSVEFTAKDFRDHAVPLIEEILSR------------NGLPVIVGGTN  121 (468)
T ss_pred             ecCCCCcCcHHHHHHHHHHHHHHHHhc------------CCCeEEEcChH
Confidence            988865  4556776666666655544            46788774443

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.88  E-value=0.00094  Score=59.85  Aligned_cols=31  Identities=19%  Similarity=0.276  Sum_probs=25.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +|+|+|++||||||+|+.|+..+     ...++++|
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~-----~~~~i~~~   31 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKY-----GLPHISTG   31 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc-----CCeEEECc
Confidence            58999999999999999999874     45566653

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK13947 shikimate kinase; Provisional

Probab=96.87  E-value=0.001  Score=58.53  Aligned_cols=32  Identities=28%  Similarity=0.468  Sum_probs=28.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .|+++|+.||||||+++.|++.+     ..-|+|.|.
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~l-----g~~~id~d~   34 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTL-----SFGFIDTDK   34 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHh-----CCCEEECch
Confidence            59999999999999999999987     445788885

>PRK13236 nitrogenase reductase; Reviewed

Probab=96.87  E-value=0.0017  Score=62.92  Aligned_cols=42  Identities=14%  Similarity=0.171  Sum_probs=37.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .++-|.|--|+||||++-.|+--|.++|++|.++|+|++.+.
T Consensus         7 ~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~   48 (296)
T PRK13236          7 RQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADS   48 (296)
T ss_pred             eEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCc
Confidence            355566655999999999999999999999999999999766

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.86  E-value=0.00097  Score=55.18  Aligned_cols=22  Identities=36%  Similarity=0.468  Sum_probs=21.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 017141           40 AFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      |+|.|..||||||+++.|..++
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999997

...

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=96.86  E-value=0.002  Score=60.18  Aligned_cols=35  Identities=29%  Similarity=0.301  Sum_probs=32.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      +.+-|+|.+||||||++..|+.+|.++|.+|+++.
T Consensus         2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK   36 (229)
T PRK14494          2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK   36 (229)
T ss_pred             eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence            46889999999999999999999988999999985

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.86  E-value=0.0022  Score=61.23  Aligned_cols=68  Identities=19%  Similarity=0.232  Sum_probs=46.3

Q ss_pred             CccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEE
Q 017141           14 AIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSL   88 (376)
Q Consensus        14 ~~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl   88 (376)
                      .+..+++..+.+..+....    ...|+|+|+.||||||+.+.|++++.+.+.+++.++ ||  .|+..||....
T Consensus        61 ~lg~~~~~~~~l~~~~~~~----~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiE-dp--~E~~~~~~~q~  128 (264)
T cd01129          61 KLGLKPENLEIFRKLLEKP----HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVE-DP--VEYQIPGINQV  128 (264)
T ss_pred             HcCCCHHHHHHHHHHHhcC----CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEEC-CC--ceecCCCceEE
Confidence            3455666666665554322    347999999999999999999999866566677776 33  35555664433

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PLN02840 tRNA dimethylallyltransferase

Probab=96.84  E-value=0.0039  Score=63.18  Aligned_cols=100  Identities=12%  Similarity=0.127  Sum_probs=60.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCC
Q 017141           35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGD  114 (376)
Q Consensus        35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~  114 (376)
                      ..++.|+|+|+.||||||++..|+..+     ..-++.+|-.|--...+  |.-.   +|.+. .   . .-...|+++.
T Consensus        19 ~~~~vi~I~GptgsGKTtla~~La~~~-----~~~iis~Ds~qvYr~~~--IgTa---Kpt~e-E---~-~~V~Hhlidi   83 (421)
T PLN02840         19 KKEKVIVISGPTGAGKSRLALELAKRL-----NGEIISADSVQVYRGLD--VGSA---KPSLS-E---R-KEVPHHLIDI   83 (421)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHC-----CCCeEeccccceeccee--EEcC---CCCHH-H---H-cCCCeEeEee
Confidence            346689999999999999999998876     22367777655432222  1111   11100 0   0 0113589999


Q ss_pred             CCCCCC--hHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCC
Q 017141          115 VSSKRD--PTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPG  161 (376)
Q Consensus       115 ~sp~~~--~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~G  161 (376)
                      .+|.+.  ...|...+.++++.+..+            ...|+||=-.|
T Consensus        84 l~p~e~ySv~~F~~~A~~~I~~i~~r------------gkiPIvVGGTG  120 (421)
T PLN02840         84 LHPSDDYSVGAFFDDARRATQDILNR------------GRVPIVAGGTG  120 (421)
T ss_pred             cCCCCceeHHHHHHHHHHHHHHHHhc------------CCCEEEEcCcc
Confidence            888763  456666655555544433            56788876555

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=96.83  E-value=0.0011  Score=59.07  Aligned_cols=30  Identities=23%  Similarity=0.411  Sum_probs=24.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      +|+|+|++||||||+|+.|+.++     ...+++.
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~-----~~~~is~   30 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENF-----GFTHLSA   30 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc-----CCeEEEC
Confidence            48999999999999999999876     3455554

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=96.83  E-value=0.0019  Score=57.74  Aligned_cols=34  Identities=26%  Similarity=0.244  Sum_probs=29.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      .|.|.|+.||||||+++.|++++-..|.++..+.
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~   35 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTR   35 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            5889999999999999999999987788776654

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.82  E-value=0.0019  Score=64.57  Aligned_cols=41  Identities=32%  Similarity=0.285  Sum_probs=35.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-C-CcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-Y-KKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~-~~v~~lDlD~G   76 (376)
                      .+..++++||+|+||||++..|+.++..+ | .+|.++.+|.-
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~  178 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY  178 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            46799999999999999999999997644 5 58999999865

>TIGR00235 udk uridine kinase

Probab=96.81  E-value=0.0013  Score=60.20  Aligned_cols=37  Identities=27%  Similarity=0.326  Sum_probs=28.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+..|.|+|+.|||||||++.|++.+-.  ..+.++..|
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D   41 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQD   41 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccc
Confidence            3678999999999999999999987522  234455444

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.81  E-value=0.0021  Score=59.41  Aligned_cols=40  Identities=25%  Similarity=0.369  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~   75 (376)
                      .+..++|.|++|+|||+|+..++-..+++ |.+|+|+.++-
T Consensus        18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee   58 (226)
T PF06745_consen   18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE   58 (226)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence            46799999999999999998877666677 99999988863

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=96.81  E-value=0.0026  Score=57.19  Aligned_cols=38  Identities=16%  Similarity=0.266  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      .+..+++.|++|+|||.|+..+++.++++|.+|.|++.
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~   83 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA   83 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence            35679999999999999999999999999999999865

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.80  E-value=0.0018  Score=55.43  Aligned_cols=42  Identities=19%  Similarity=0.239  Sum_probs=33.1

Q ss_pred             ChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           18 PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        18 p~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +++..++.+.++..  ..++..|++.|+.|+|||||+|.++..+
T Consensus         5 ~~~t~~l~~~l~~~--l~~~~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150         5 EKAMDKFGKAFAKP--LDFGTVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             HHHHHHHHHHHHHh--CCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            45666777777632  2346799999999999999999999976

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=96.80  E-value=0.002  Score=57.89  Aligned_cols=36  Identities=25%  Similarity=0.239  Sum_probs=31.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      +..|.|.|+.||||||+++.|++.+-..|.++.++.
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~   38 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTR   38 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            567999999999999999999999887787777654

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.80  E-value=0.0018  Score=57.06  Aligned_cols=32  Identities=31%  Similarity=0.359  Sum_probs=29.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcE
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKV   68 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v   68 (376)
                      ..+|.|.|++|+||||++.-++++|.+.|++|
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv   36 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKV   36 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence            57999999999999999999999999887665

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.79  E-value=0.0023  Score=58.27  Aligned_cols=46  Identities=15%  Similarity=0.265  Sum_probs=32.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcC-CcEEEEcCCCCCCCCCCCceEE
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRY-KKVAYLDTDVGQPEFTAPGFLS   87 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~-~~v~~lDlD~GQ~~~~~PG~vS   87 (376)
                      .|+|+|+.||||||+++.|++++.... .++..++- +-  |+..++..+
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~-~~--E~~~~~~~~   49 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED-PI--EFVHESKRS   49 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC-Cc--cccccCccc
Confidence            689999999999999999999987543 34555443 32  444555433

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=96.79  E-value=0.0022  Score=59.66  Aligned_cols=41  Identities=20%  Similarity=0.418  Sum_probs=35.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~G   76 (376)
                      ++..++|+|++|+|||||+..++..++.. +.+|+|+.++-.
T Consensus        12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~   53 (242)
T cd00984          12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS   53 (242)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence            46799999999999999999988877776 999999988753

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=96.78  E-value=0.0035  Score=62.49  Aligned_cols=51  Identities=25%  Similarity=0.382  Sum_probs=35.9

Q ss_pred             CCCCCCCCCccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141            6 PQTENPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR   64 (376)
Q Consensus         6 ~~~~~~~~~~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~   64 (376)
                      |........+.+|+.+.+.+.        .++..|+|+|+.||||||+.+.|++++...
T Consensus       111 ~~~~~~l~~l~~~~~~~~~~~--------~~~glilI~GpTGSGKTTtL~aLl~~i~~~  161 (358)
T TIGR02524       111 PAEPPKLSKLDLPAAIIDAIA--------PQEGIVFITGATGSGKSTLLAAIIRELAEA  161 (358)
T ss_pred             CCCCCCHHHcCCCHHHHHHHh--------ccCCEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            334444455667765544332        125689999999999999999999998653

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK06526 transposase; Provisional

Probab=96.77  E-value=0.0015  Score=62.17  Aligned_cols=35  Identities=20%  Similarity=0.135  Sum_probs=32.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL   71 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l   71 (376)
                      +..++++|++|+|||+++..|++.+.+.|++|.|.
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~  132 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA  132 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence            56899999999999999999999999999998883

>PF13479 AAA_24: AAA domain

Probab=96.77  E-value=0.0014  Score=60.52  Aligned_cols=33  Identities=36%  Similarity=0.581  Sum_probs=30.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      +.+++|.|+.|+|||||++.+        .+++|||+|-|.
T Consensus         3 ~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~   35 (213)
T PF13479_consen    3 PIKILIYGPPGSGKTTLAASL--------PKPLFIDTENGS   35 (213)
T ss_pred             ceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCc
Confidence            578999999999999999988        789999999884

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.77  E-value=0.0031  Score=62.49  Aligned_cols=49  Identities=16%  Similarity=0.258  Sum_probs=34.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcC-CcEEEEcCCCCCCCCCCCceEEE
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRY-KKVAYLDTDVGQPEFTAPGFLSL   88 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~-~~v~~lDlD~GQ~~~~~PG~vSl   88 (376)
                      +..|+|+|+.||||||+.+.|++++.+.. .++..+ -||  .|+..|+..++
T Consensus       122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti-Edp--~E~~~~~~~~~  171 (343)
T TIGR01420       122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI-EDP--IEYVHRNKRSL  171 (343)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE-cCC--hhhhccCccce
Confidence            46799999999999999999999876443 344444 444  34445554443

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.77  E-value=0.0023  Score=59.21  Aligned_cols=39  Identities=26%  Similarity=0.315  Sum_probs=35.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+..++|.|++|+|||||+..++...++++.++.|+.++
T Consensus        19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e   57 (229)
T TIGR03881        19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE   57 (229)
T ss_pred             CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            467999999999999999999988888889999999885

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PHA00729 NTP-binding motif containing protein

Probab=96.77  E-value=0.0016  Score=60.73  Aligned_cols=26  Identities=27%  Similarity=0.373  Sum_probs=23.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      -..|+|.|++|+||||||..|++.+.
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35899999999999999999999875

>PRK13948 shikimate kinase; Provisional

Probab=96.76  E-value=0.0015  Score=58.98  Aligned_cols=34  Identities=26%  Similarity=0.453  Sum_probs=29.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+..|+++|..||||||++|.|++.+     ...|+|+|
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~l-----g~~~iD~D   42 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRAL-----MLHFIDTD   42 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHc-----CCCEEECC
Confidence            35689999999999999999999987     34577999

>PTZ00301 uridine kinase; Provisional

Probab=96.75  E-value=0.0022  Score=59.17  Aligned_cols=27  Identities=30%  Similarity=0.511  Sum_probs=24.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQR   64 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~   64 (376)
                      ..|.|.|++||||||||+.|++.+.+.
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l~~~   30 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSELMAH   30 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence            579999999999999999999988643

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=96.75  E-value=0.0021  Score=64.31  Aligned_cols=49  Identities=29%  Similarity=0.345  Sum_probs=39.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceE
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFL   86 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~v   86 (376)
                      +..|-|+|.+|||||||+..|+..+-.+ .+|+++.-+...-++..||.-
T Consensus         5 ~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~~~~~~~d~~~~d   53 (369)
T PRK14490          5 PFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKHGCHRFDIDREGKD   53 (369)
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEeCCCCCCCCcccch
Confidence            6789999999999999999999998877 899999865544444444433

>PRK05973 replicative DNA helicase; Provisional

Probab=96.74  E-value=0.0037  Score=58.80  Aligned_cols=41  Identities=12%  Similarity=0.212  Sum_probs=36.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      ++..++|.|++|+|||||+..++...++.|.+|+|+.++-.
T Consensus        63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes  103 (237)
T PRK05973         63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT  103 (237)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence            46799999999999999999999888888999999988654

>PRK14531 adenylate kinase; Provisional

Probab=96.74  E-value=0.0016  Score=58.47  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=22.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+|+|+|++||||||+|+.|+.++
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~   26 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAH   26 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999999985

>PRK14532 adenylate kinase; Provisional

Probab=96.72  E-value=0.0015  Score=58.51  Aligned_cols=30  Identities=27%  Similarity=0.319  Sum_probs=24.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      +|+++|++||||||+|+.|+.++     ...+++.
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~-----g~~~is~   31 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEER-----GMVQLST   31 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc-----CCeEEeC
Confidence            58999999999999999998765     4455655

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=96.72  E-value=0.0028  Score=58.57  Aligned_cols=40  Identities=25%  Similarity=0.346  Sum_probs=36.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .+..++|.|++|+|||+||..++...++++.+|.|++++-
T Consensus        15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~   54 (224)
T TIGR03880        15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE   54 (224)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            3678999999999999999999998888899999999874

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>TIGR02012 tigrfam_recA protein RecA

Probab=96.72  E-value=0.0025  Score=62.53  Aligned_cols=39  Identities=26%  Similarity=0.355  Sum_probs=36.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+..++|.|+.||||||||..++..+.+.+.+|+|+|..
T Consensus        54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E   92 (321)
T TIGR02012        54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE   92 (321)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEccc
Confidence            467999999999999999999999999999999999885

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.71  E-value=0.0019  Score=60.45  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=27.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +.+|+|+|++||||||+|+.|+..+     .+.++++|
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~~~-----g~~~is~g   38 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSKKE-----NLKHINMG   38 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh-----CCcEEECC
Confidence            5679999999999999999998875     45566655

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.71  E-value=0.0014  Score=60.46  Aligned_cols=37  Identities=27%  Similarity=0.294  Sum_probs=27.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      +|-++.||||.|||||||.|.| |.|-.-...-+++|-
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRcl-N~LE~~~~G~I~i~g   63 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCL-NGLEEPDSGSITVDG   63 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHH-HCCcCCCCceEEECC
Confidence            4789999999999999999986 555443334455555

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=96.70  E-value=0.0036  Score=58.62  Aligned_cols=50  Identities=20%  Similarity=0.267  Sum_probs=39.4

Q ss_pred             HHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           25 ADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        25 ~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      +|++...+ -.++..++|.|++|+||||||..++...++.|.+++|+.++-
T Consensus        10 LD~~l~GG-~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee   59 (237)
T TIGR03877        10 MDEILHGG-IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE   59 (237)
T ss_pred             HHHHhcCC-CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence            45544333 235789999999999999999988877778899999998764

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=96.70  E-value=0.0046  Score=60.31  Aligned_cols=47  Identities=19%  Similarity=0.316  Sum_probs=33.8

Q ss_pred             hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      +|.+.++....     .+..++|+|+.|||||||++.|++.+ ....++..++
T Consensus       132 ~~~~~l~~~v~-----~~~~ili~G~tGsGKTTll~al~~~~-~~~~~iv~ie  178 (308)
T TIGR02788       132 DIKEFLRLAIA-----SRKNIIISGGTGSGKTTFLKSLVDEI-PKDERIITIE  178 (308)
T ss_pred             HHHHHHHHHhh-----CCCEEEEECCCCCCHHHHHHHHHccC-CccccEEEEc
Confidence            56666654432     25689999999999999999999875 3334555554

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.70  E-value=0.0015  Score=58.16  Aligned_cols=25  Identities=32%  Similarity=0.436  Sum_probs=22.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+.|+|+|+.||||||+|+.|+.++
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4789999999999999999999875

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=96.70  E-value=0.002  Score=61.74  Aligned_cols=104  Identities=20%  Similarity=0.346  Sum_probs=56.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSS  117 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~sp  117 (376)
                      |-|+|||-++|||||+|+.|..++-..+.+|.+++-|--.             ++.           .   .  |.+.  
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~-------------~~~-----------~---~--y~~~--   50 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG-------------IDR-----------N---D--YADS--   50 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH--------------TT-----------S---S--S--G--
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc-------------cch-----------h---h--hhch--
Confidence            5689999999999999999999998888888888754111             111           0   1  1111  


Q ss_pred             CCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccccccHHHHHHHHHHhCCCEEEEEe
Q 017141          118 KRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKIN  187 (376)
Q Consensus       118 ~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~G~~ll~~~i~~~~p~~Vv~l~  187 (376)
                       .........   +...+.+.+.          +..-+|+|..=+++|+=+++-. +.+..+..++++.-
T Consensus        51 -~~Ek~~R~~---l~s~v~r~ls----------~~~iVI~Dd~nYiKg~RYelyc-lAr~~~~~~c~i~~  105 (270)
T PF08433_consen   51 -KKEKEARGS---LKSAVERALS----------KDTIVILDDNNYIKGMRYELYC-LARAYGTTFCVIYC  105 (270)
T ss_dssp             -GGHHHHHHH---HHHHHHHHHT----------T-SEEEE-S---SHHHHHHHHH-HHHHTT-EEEEEEE
T ss_pred             -hhhHHHHHH---HHHHHHHhhc----------cCeEEEEeCCchHHHHHHHHHH-HHHHcCCCEEEEEE
Confidence             111222222   2233333321          3456899999999998888776 77888887765443

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PF13245 AAA_19: Part of AAA domain

Probab=96.70  E-value=0.0037  Score=48.18  Aligned_cols=35  Identities=31%  Similarity=0.358  Sum_probs=27.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHc----CCcEEEE
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQR----YKKVAYL   71 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~----~~~v~~l   71 (376)
                      .+.++|.|++||||||++..++.+++..    +.+|+++
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~   48 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVL   48 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence            3567789999999998777777777754    5667765

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=96.69  E-value=0.0027  Score=56.82  Aligned_cols=41  Identities=27%  Similarity=0.429  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHH----------cCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ----------RYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~----------~~~~v~~lDlD~G   76 (376)
                      .+..++|.|+.|+|||||+..++..++.          .+.+|+|+++|-.
T Consensus        31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~   81 (193)
T PF13481_consen   31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS   81 (193)
T ss_dssp             TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence            3678999999999999999999999885          3456777666533

>PRK00698 tmk thymidylate kinase; Validated

Probab=96.69  E-value=0.0026  Score=57.45  Aligned_cols=34  Identities=26%  Similarity=0.279  Sum_probs=28.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +..|.|.|+.||||||+++.|.+++-..|..+.+
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~   36 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVF   36 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeE
Confidence            5689999999999999999999998666655444

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=96.69  E-value=0.0015  Score=56.25  Aligned_cols=31  Identities=32%  Similarity=0.503  Sum_probs=26.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .|+|+|+.||||||+++.|+.++     ...++|.|
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l-----~~~~~~~d   31 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKAL-----GLPFVDLD   31 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHh-----CCCEEEch
Confidence            38999999999999999999987     33466776

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PF05729 NACHT: NACHT domain

Probab=96.69  E-value=0.0025  Score=54.94  Aligned_cols=28  Identities=29%  Similarity=0.477  Sum_probs=25.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYK   66 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~   66 (376)
                      .++|.|++|+||||+++.++..+.+.+.
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~~~~   29 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAEEEP   29 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHhcCc
Confidence            6899999999999999999999987653

>PRK14527 adenylate kinase; Provisional

Probab=96.68  E-value=0.0018  Score=58.44  Aligned_cols=26  Identities=23%  Similarity=0.340  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+..|+|+|++||||||+++.|++++
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~   30 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQEL   30 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999998876

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=96.66  E-value=0.0039  Score=61.56  Aligned_cols=64  Identities=16%  Similarity=0.283  Sum_probs=42.3

Q ss_pred             ChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC-CCCceEEE
Q 017141           18 PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF-TAPGFLSL   88 (376)
Q Consensus        18 p~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~-~~PG~vSl   88 (376)
                      .++|.+.+.....     .+..|+|+|+.|||||||.+.|++++ ....++..++ |+..-.+ ..|..+++
T Consensus       146 ~~~~~~~L~~~v~-----~~~nili~G~tgSGKTTll~aL~~~i-p~~~ri~tiE-d~~El~l~~~~n~~~~  210 (332)
T PRK13900        146 EKKIKEFLEHAVI-----SKKNIIISGGTSTGKTTFTNAALREI-PAIERLITVE-DAREIVLSNHPNRVHL  210 (332)
T ss_pred             hHHHHHHHHHHHH-----cCCcEEEECCCCCCHHHHHHHHHhhC-CCCCeEEEec-CCCccccccCCCEEEE
Confidence            3456666664432     24579999999999999999999876 4456777776 4322222 12555655

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=96.65  E-value=0.002  Score=56.87  Aligned_cols=33  Identities=39%  Similarity=0.663  Sum_probs=27.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .+|+|+|..||||||+++.|++.+     ...|+|.|-
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~l-----g~~~~d~D~   35 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQAL-----GYRFVDTDQ   35 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh-----CCCEEEccH
Confidence            368999999999999999999987     335778873

>PF12846 AAA_10: AAA-like domain

Probab=96.65  E-value=0.0027  Score=60.34  Aligned_cols=37  Identities=32%  Similarity=0.562  Sum_probs=33.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +-++|+|.+|+||||+++.++..+++.|..+.++|-.
T Consensus         2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~   38 (304)
T PF12846_consen    2 PHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPK   38 (304)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            3589999999999999999999999999999998443

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=96.64  E-value=0.0021  Score=58.55  Aligned_cols=38  Identities=24%  Similarity=0.232  Sum_probs=30.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF   80 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~   80 (376)
                      .+|.|+|+.||||||++++|.+.+     ...++|+|-=.-++
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~-----g~~~i~~D~~~~~~   39 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQK-----GIPILDADIYAREA   39 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhh-----CCeEeeCcHHHHHH
Confidence            379999999999999999999864     45677888544443

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=96.61  E-value=0.0035  Score=56.10  Aligned_cols=40  Identities=30%  Similarity=0.477  Sum_probs=34.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      |+++|.|--|||||||.+.|+. ....+.+++++-.|.|..
T Consensus         1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~   40 (178)
T PF02492_consen    1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEV   40 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTST
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEcccccc
Confidence            6899999999999999999998 677899999999998864

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.60  E-value=0.0023  Score=53.40  Aligned_cols=38  Identities=29%  Similarity=0.405  Sum_probs=27.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHc-----CCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQR-----YKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~-----~~~v~~lDlD   74 (376)
                      ...++|.|++|+||||+++.+++.+...     ...++++++.
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~   46 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCP   46 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeC
Confidence            4579999999999999999999998754     4455555553

>PRK08727 hypothetical protein; Validated

Probab=96.59  E-value=0.0025  Score=59.64  Aligned_cols=37  Identities=24%  Similarity=0.322  Sum_probs=33.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .-++++|++|+|||+|++.+++.+.+++.++.|+.++
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~   78 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ   78 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence            4599999999999999999999999999999998753

>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional

Probab=96.58  E-value=0.0042  Score=63.04  Aligned_cols=37  Identities=27%  Similarity=0.281  Sum_probs=33.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +++-|+|.+|||||||+..|+..|-++|.+|++|--|
T Consensus         2 kVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~   38 (452)
T PRK14495          2 RVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHS   38 (452)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence            4688999999999999999999999999999996543

>TIGR01351 adk adenylate kinases

Probab=96.58  E-value=0.0016  Score=59.81  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|+|+|++||||||+|+.|+.++
T Consensus         1 rI~i~G~pGsGKsT~a~~La~~~   23 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAEKY   23 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc
Confidence            48999999999999999998764

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=96.58  E-value=0.0028  Score=56.75  Aligned_cols=33  Identities=15%  Similarity=0.388  Sum_probs=27.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..+.|+|+.|+||||+++.|+..+     ++.++|.|
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l-----~~~~i~gd   35 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALF-----SAKFIDGD   35 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhc-----CCEEECCc
Confidence            5689999999999999999999975     23467776

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.57  E-value=0.0036  Score=53.14  Aligned_cols=34  Identities=26%  Similarity=0.459  Sum_probs=27.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      ||+.|++|+|||++++.++..+   +.++..+.+..+
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~   35 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALL---GRPVIRINCSSD   35 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---hcceEEEEeccc
Confidence            7999999999999999999998   566666666543

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=96.57  E-value=0.0036  Score=59.33  Aligned_cols=54  Identities=22%  Similarity=0.286  Sum_probs=43.1

Q ss_pred             HHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           25 ADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        25 ~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      +|.+...+ -..+..++|.|++|||||+|+..++...++.|.+|.|+-+|-...+
T Consensus        12 lD~~l~GG-~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~   65 (260)
T COG0467          12 LDEILGGG-LPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEE   65 (260)
T ss_pred             hHHHhcCC-CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHH
Confidence            44444322 2347899999999999999999999999999999999998865443

>PRK06851 hypothetical protein; Provisional

Probab=96.56  E-value=0.022  Score=56.90  Aligned_cols=61  Identities=18%  Similarity=0.179  Sum_probs=50.2

Q ss_pred             CCccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC--CCCC
Q 017141           13 PAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT--DVGQ   77 (376)
Q Consensus        13 ~~~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl--D~GQ   77 (376)
                      .+-..|+.+...++.+..+-    ..+++|.|+.|+||||+++.++..+.++|..|.+.-|  ||..
T Consensus       194 ~ga~Tp~G~~s~~~~l~~~~----~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dPds  256 (367)
T PRK06851        194 LGAITPKGAVDFVPSLTEGV----KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDPDS  256 (367)
T ss_pred             ccccCCCcHHhhHHhHhccc----ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Confidence            45567888999998887432    4689999999999999999999999999998887665  5543

>PRK04296 thymidine kinase; Provisional

Probab=96.56  E-value=0.0042  Score=56.27  Aligned_cols=35  Identities=31%  Similarity=0.288  Sum_probs=32.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL   71 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l   71 (376)
                      +..++++|+.|+||||++..++.++...+.+|+++
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~   36 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF   36 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence            45789999999999999999999999999999998

>PRK13946 shikimate kinase; Provisional

Probab=96.55  E-value=0.0023  Score=57.58  Aligned_cols=33  Identities=30%  Similarity=0.563  Sum_probs=29.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ...|+++|..||||||+++.|++.+     ..-|+|.|
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~L-----g~~~id~D   42 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATML-----GLPFLDAD   42 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc-----CCCeECcC
Confidence            4579999999999999999999998     34489999

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=96.55  E-value=0.0037  Score=57.89  Aligned_cols=51  Identities=25%  Similarity=0.283  Sum_probs=37.0

Q ss_pred             HHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc------CCcEEEEcCCC
Q 017141           24 AADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR------YKKVAYLDTDV   75 (376)
Q Consensus        24 ~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~------~~~v~~lDlD~   75 (376)
                      .+|.+..++ -..+..+.|+|+.|+||||||..++-..+..      +.+|+|+|.+-
T Consensus         7 ~lD~~l~GG-i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~   63 (235)
T cd01123           7 ALDELLGGG-IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG   63 (235)
T ss_pred             hhHhhccCC-CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence            345544332 2347899999999999999999997554433      37899999874

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=96.54  E-value=0.0022  Score=54.51  Aligned_cols=31  Identities=39%  Similarity=0.558  Sum_probs=26.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .|.|+|+.||||||+++.|+..+     ..-++|.|
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~-----~~~~~~~~   31 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKL-----GLPYLDTG   31 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh-----CCceeccc
Confidence            37899999999999999999886     45578887

>PLN02674 adenylate kinase

Probab=96.54  E-value=0.0038  Score=58.92  Aligned_cols=40  Identities=18%  Similarity=0.195  Sum_probs=31.7

Q ss_pred             hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      -|..++..+....  ...++|+|+|++||||+|.|+.|+..+
T Consensus        16 ~~~~~~~~~~~~~--~~~~~i~l~G~PGsGKgT~a~~La~~~   55 (244)
T PLN02674         16 LMTELLRRMKCSS--KPDKRLILIGPPGSGKGTQSPIIKDEY   55 (244)
T ss_pred             HHHHHHHHHhhcc--ccCceEEEECCCCCCHHHHHHHHHHHc
Confidence            5677777775433  236899999999999999999998865

>PRK00279 adk adenylate kinase; Reviewed

Probab=96.54  E-value=0.0027  Score=58.49  Aligned_cols=30  Identities=17%  Similarity=0.293  Sum_probs=25.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      +|+|+|++||||||+|+.|+.++     ...++++
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~-----~~~~is~   31 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKY-----GIPHIST   31 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCcEEEC
Confidence            79999999999999999998775     4556553

>PRK08181 transposase; Validated

Probab=96.53  E-value=0.0027  Score=60.85  Aligned_cols=37  Identities=16%  Similarity=0.226  Sum_probs=34.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      +..++++|+.|+|||.|+..+++.+.+.|++|.|+..
T Consensus       106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~  142 (269)
T PRK08181        106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT  142 (269)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence            4579999999999999999999999999999999865

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=96.53  E-value=0.0023  Score=61.75  Aligned_cols=34  Identities=24%  Similarity=0.377  Sum_probs=27.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      ..|+++|++||||||+|+.|+.++    ....++|.|-
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~----~~~~~l~~D~   36 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKN----PKAVNVNRDD   36 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHC----CCCEEEeccH
Confidence            468899999999999999998875    1456666653

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=96.53  E-value=0.0023  Score=58.07  Aligned_cols=23  Identities=43%  Similarity=0.613  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .|.|.|+.||||||||+.|+..+
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~   23 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRIL   23 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc
Confidence            37899999999999999999985

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=96.53  E-value=0.004  Score=59.08  Aligned_cols=58  Identities=14%  Similarity=0.145  Sum_probs=42.6

Q ss_pred             cCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCCCC
Q 017141           16 YIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDVG   76 (376)
Q Consensus        16 ~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~G   76 (376)
                      .+|-.|..+= .+.. + -..+..++|.|+.|+|||||+..++..+... |.+|+|+.++..
T Consensus        12 ~~~tg~~~Ld-~~~g-G-~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~   70 (271)
T cd01122          12 EVWWPFPVLN-KLTK-G-LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP   70 (271)
T ss_pred             CCCCCcceee-eeeE-E-EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC
Confidence            4555554432 2321 2 1246799999999999999999998888776 899999998753

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PLN02796 D-glycerate 3-kinase

Probab=96.53  E-value=0.0029  Score=62.52  Aligned_cols=39  Identities=33%  Similarity=0.489  Sum_probs=29.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+..|-|+|+.|||||||++.|.+.+-..+.++..+-+|
T Consensus        99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiD  137 (347)
T PLN02796         99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSID  137 (347)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEEC
Confidence            456799999999999999999998875444444444443

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=96.52  E-value=0.0026  Score=56.57  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=23.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +..|+++|+.||||||++|.|...+
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~   26 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVL   26 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            5689999999999999999999875

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=96.52  E-value=0.0069  Score=60.62  Aligned_cols=39  Identities=23%  Similarity=0.312  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcC--CcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRY--KKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~--~~v~~lDlD   74 (376)
                      .++.++|.|++|+||||+++.+++.+-+.+  ..+++++|.
T Consensus        54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~   94 (394)
T PRK00411         54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ   94 (394)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC
Confidence            357899999999999999999999987664  456666664

>PRK06761 hypothetical protein; Provisional

Probab=96.52  E-value=0.003  Score=60.87  Aligned_cols=40  Identities=28%  Similarity=0.418  Sum_probs=32.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE-EEcCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA-YLDTDVG   76 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~-~lDlD~G   76 (376)
                      ++.|+|+|++||||||+++.|++++...+..+. +.+.|+.
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~   43 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLD   43 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCC
Confidence            357999999999999999999999876666665 4565654

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=96.50  E-value=0.007  Score=59.89  Aligned_cols=56  Identities=20%  Similarity=0.287  Sum_probs=37.8

Q ss_pred             hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcC------CcEEEEcCC
Q 017141           19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRY------KKVAYLDTD   74 (376)
Q Consensus        19 ~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~------~~v~~lDlD   74 (376)
                      ++.+++...+........++.++|.|++|+|||++++.+++.+.+..      ..++++||.
T Consensus        22 ~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~   83 (365)
T TIGR02928        22 EQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ   83 (365)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence            36666666554211112356899999999999999999999876432      245566653

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown

Probab=96.48  E-value=0.004  Score=57.63  Aligned_cols=44  Identities=25%  Similarity=0.313  Sum_probs=37.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEEcCCCCCCCCCCCc
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYLDTDVGQPEFTAPG   84 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll-~~~~~v~~lDlD~GQ~~~~~PG   84 (376)
                      ..++|.|.+|||||++++.|+..++ +.+.++.++|.   .+|+..-.
T Consensus        24 ~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~---~GEY~~~~   68 (229)
T PF01935_consen   24 RHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDP---HGEYASLF   68 (229)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcC---CCcchhhh
Confidence            5699999999999999999999999 88888888887   55765444

It contains several conserved aspartates and histidines that could be metal ligands.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.48  E-value=0.0021  Score=52.87  Aligned_cols=21  Identities=33%  Similarity=0.404  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +|+|+|..|+|||||.+.|++
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHhc
Confidence            689999999999999999984

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.48  E-value=0.006  Score=56.18  Aligned_cols=50  Identities=28%  Similarity=0.265  Sum_probs=38.8

Q ss_pred             HHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcC------CcEEEEcCC
Q 017141           24 AADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRY------KKVAYLDTD   74 (376)
Q Consensus        24 ~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~------~~v~~lDlD   74 (376)
                      .+|.+..++ -..+..+.|.|+.|+|||+||..++-..+..+      .+|+|+|.+
T Consensus         7 ~lD~~l~GG-~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e   62 (226)
T cd01393           7 ALDELLGGG-IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE   62 (226)
T ss_pred             HHHHHhCCC-CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence            345554322 23478999999999999999999988877766      789998886

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=96.44  E-value=0.0023  Score=57.06  Aligned_cols=32  Identities=31%  Similarity=0.526  Sum_probs=28.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +.|++||..|+||||+.|.|+..|     ..-|+|.|
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L-----~~~F~D~D   34 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKAL-----NLPFIDTD   34 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHc-----CCCcccch
Confidence            568999999999999999999987     55689998

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.42  E-value=0.0056  Score=56.03  Aligned_cols=40  Identities=25%  Similarity=0.256  Sum_probs=34.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      ..++|.++|..|||||||...|+..+- .+.+++++..|++
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~   60 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVI   60 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCC
Confidence            367899999999999999999999864 3568999998875

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK07952 DNA replication protein DnaC; Validated

Probab=96.41  E-value=0.0039  Score=58.90  Aligned_cols=36  Identities=25%  Similarity=0.325  Sum_probs=32.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      .-+++.|+.|+|||+|+..++|++.+.+.+|.|+++
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~  135 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV  135 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence            368999999999999999999999999999999853

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.41  E-value=0.0025  Score=56.56  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=22.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +..|+|+|++||||||+++.|++..
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccC
Confidence            3579999999999999999999864

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.41  E-value=0.0043  Score=58.41  Aligned_cols=33  Identities=27%  Similarity=0.445  Sum_probs=27.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA   69 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~   69 (376)
                      +-|+.|+|++|||||||++.|+..+-+....+.
T Consensus        13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~   45 (241)
T PF04665_consen   13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIF   45 (241)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcccCCEEE
Confidence            458999999999999999999988766554443

This is thought to be an ATPase involved in viral DNA packaging [].

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=96.41  E-value=0.002  Score=58.68  Aligned_cols=58  Identities=19%  Similarity=0.064  Sum_probs=49.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLT   95 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~   95 (376)
                      .+|+|+|+.|+|||||+..|........+.+...+.++++......+.+.+..++.++
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~g   63 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG   63 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCC
Confidence            5899999999999999999999988888888888888888887777677777777753

>PRK12377 putative replication protein; Provisional

Probab=96.39  E-value=0.0044  Score=58.72  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=33.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      ..+++.|+.|+|||+|+..++|.+.++|..|.|+..
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~  137 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV  137 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence            569999999999999999999999999999999876

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=96.39  E-value=0.0031  Score=57.26  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=27.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      .+|.|+|+.||||||++++|.+ +     ...++|+|-=
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~-----g~~~i~~D~~   35 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-L-----GAPVIDADAI   35 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-c-----CCEEEEecHH
Confidence            4799999999999999999987 2     3568888853

>PRK04328 hypothetical protein; Provisional

Probab=96.39  E-value=0.0054  Score=57.99  Aligned_cols=40  Identities=20%  Similarity=0.298  Sum_probs=35.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .+..++|.|++|+|||+||..++-..+++|.+++|+.++-
T Consensus        22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee   61 (249)
T PRK04328         22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE   61 (249)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence            4779999999999999999998887888899999998853

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.38  E-value=0.0056  Score=60.17  Aligned_cols=39  Identities=28%  Similarity=0.372  Sum_probs=35.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+..+.|.|+.+|||||||..++-.+.+.+.+++|+|..
T Consensus        54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E   92 (325)
T cd00983          54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE   92 (325)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcc
Confidence            467899999999999999999999888999999999973

RecA couples ATP hydrolysis to DNA strand exchange.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.38  E-value=0.0031  Score=56.02  Aligned_cols=24  Identities=21%  Similarity=0.354  Sum_probs=21.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ..++|+|+.||||||+++.|++.+
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~   25 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARL   25 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            478999999999999999998875

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.36  E-value=0.0043  Score=51.13  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLV   58 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~   58 (376)
                      +..+.+.|+.|||||||++.|.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            5689999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=96.36  E-value=0.0046  Score=62.55  Aligned_cols=39  Identities=31%  Similarity=0.400  Sum_probs=28.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+..|-|+|+.|||||||++.|...+-..+.++..|-+|
T Consensus       211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiD  249 (460)
T PLN03046        211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSID  249 (460)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEEC
Confidence            456788999999999999999966553345555555444

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=96.36  E-value=0.0028  Score=54.88  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=19.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .|||++|+.+||||||++.|..
T Consensus         2 krimliG~~g~GKTTL~q~L~~   23 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNG   23 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcC
Confidence            4899999999999999997754

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=96.33  E-value=0.0037  Score=61.98  Aligned_cols=41  Identities=20%  Similarity=0.322  Sum_probs=32.3

Q ss_pred             CChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        17 ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      ...+|...+.....     .+..|+|+|+.|||||||++.|++++-
T Consensus       147 ~~~~~~~~l~~~v~-----~~~nilI~G~tGSGKTTll~aLl~~i~  187 (344)
T PRK13851        147 DNGDLEAFLHACVV-----GRLTMLLCGPTGSGKTTMSKTLISAIP  187 (344)
T ss_pred             ccHHHHHHHHHHHH-----cCCeEEEECCCCccHHHHHHHHHcccC
Confidence            45567777776543     256899999999999999999998763

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=96.33  E-value=0.0072  Score=52.69  Aligned_cols=39  Identities=36%  Similarity=0.426  Sum_probs=37.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +|-+|-|.|-.+|||||++-.|-.+|+++|.-.+.+|.|
T Consensus        30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGD   68 (207)
T KOG0635|consen   30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGD   68 (207)
T ss_pred             CCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCc
Confidence            477999999999999999999999999999999999988

>PLN03025 replication factor C subunit; Provisional

Probab=96.32  E-value=0.0053  Score=60.10  Aligned_cols=29  Identities=31%  Similarity=0.307  Sum_probs=25.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRY   65 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~   65 (376)
                      .+.+++.||+|+||||+++.+++.+...+
T Consensus        34 ~~~lll~Gp~G~GKTtla~~la~~l~~~~   62 (319)
T PLN03025         34 MPNLILSGPPGTGKTTSILALAHELLGPN   62 (319)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHhccc
Confidence            46799999999999999999999986443

>PRK04182 cytidylate kinase; Provisional

Probab=96.31  E-value=0.0029  Score=55.80  Aligned_cols=30  Identities=33%  Similarity=0.434  Sum_probs=25.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      +|.|+|..||||||+++.|++.+     ..-++|+
T Consensus         2 ~I~i~G~~GsGKstia~~la~~l-----g~~~id~   31 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKL-----GLKHVSA   31 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc-----CCcEecH
Confidence            68999999999999999999886     3346664

>PRK09354 recA recombinase A; Provisional

Probab=96.31  E-value=0.0062  Score=60.35  Aligned_cols=39  Identities=26%  Similarity=0.363  Sum_probs=36.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+..+.|.|+.+|||||||-.++....+.+.+++|+|..
T Consensus        59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E   97 (349)
T PRK09354         59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE   97 (349)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCc
Confidence            467999999999999999999998888999999999985

>smart00053 DYNc Dynamin, GTPase

Probab=96.30  E-value=0.037  Score=52.17  Aligned_cols=25  Identities=20%  Similarity=0.387  Sum_probs=22.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      .-|.+.|+|+.++||||+.+.|+..
T Consensus        25 ~~p~i~vvG~~~~GKSt~l~~i~g~   49 (240)
T smart00053       25 DLPQIAVVGGQSAGKSSVLENFVGR   49 (240)
T ss_pred             CCCeEEEEcCCCccHHHHHHHHhCC
Confidence            4689999999999999999998875

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=96.30  E-value=0.0053  Score=59.36  Aligned_cols=31  Identities=26%  Similarity=0.264  Sum_probs=26.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKK   67 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~   67 (376)
                      .+.+++.|++|+||||+++.+++.+...++.
T Consensus        38 ~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~   68 (319)
T PRK00440         38 MPHLLFAGPPGTGKTTAALALARELYGEDWR   68 (319)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence            4568999999999999999999998654433

>PRK06921 hypothetical protein; Provisional

Probab=96.29  E-value=0.009  Score=57.13  Aligned_cols=37  Identities=22%  Similarity=0.242  Sum_probs=34.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDT   73 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDl   73 (376)
                      +..+++.|++|+|||+|+..++|.++++ +..|+|+..
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~  154 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF  154 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence            5679999999999999999999999988 899999875

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=96.29  E-value=0.0099  Score=59.59  Aligned_cols=51  Identities=16%  Similarity=0.268  Sum_probs=35.9

Q ss_pred             CCccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEE
Q 017141           13 PAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYL   71 (376)
Q Consensus        13 ~~~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~l   71 (376)
                      ..+.+|+++.+.+   ..     ....|+|+|+.||||||+.+.|++++.+.  ..++..+
T Consensus       133 ~~lgl~~~~~~~l---~~-----~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~Ivti  185 (372)
T TIGR02525       133 KQMGIEPDLFNSL---LP-----AAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTY  185 (372)
T ss_pred             HHcCCCHHHHHHH---Hh-----cCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence            4455677654443   21     13479999999999999999999998753  3455555

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>PRK06835 DNA replication protein DnaC; Validated

Probab=96.28  E-value=0.0043  Score=61.19  Aligned_cols=37  Identities=30%  Similarity=0.363  Sum_probs=34.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      ...+++.|+.|+|||.|+..+++.++++|..|.|+..
T Consensus       183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~  219 (329)
T PRK06835        183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA  219 (329)
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence            3569999999999999999999999999999999876

>cd03112 CobW_like The function of this protein family is unkown

Probab=96.28  E-value=0.0063  Score=53.44  Aligned_cols=42  Identities=24%  Similarity=0.491  Sum_probs=34.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFT   81 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~   81 (376)
                      |.++|.|..|+|||||.+.|+...  .+.+++++-.|-|...+.
T Consensus         1 p~~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~G~~~~d   42 (158)
T cd03112           1 PVTVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEFGEVGID   42 (158)
T ss_pred             CEEEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCCCccchh
Confidence            578999999999999999988763  478899988888766644

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>TIGR00101 ureG urease accessory protein UreG

Probab=96.28  E-value=0.0054  Score=56.05  Aligned_cols=39  Identities=23%  Similarity=0.241  Sum_probs=32.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      .+|.|+|+.|||||||++.+++.+-. ..++.++..|.+.
T Consensus         2 ~~i~i~G~~GsGKTTll~~l~~~l~~-~~~~~~~~~d~~~   40 (199)
T TIGR00101         2 LKIGVAGPVGSGKTALIEALTRALRQ-KYQLAVITNDIYT   40 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhhCc-CCcEEEEeCCcCC
Confidence            47899999999999999999987644 4568888888764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=96.27  E-value=0.0037  Score=55.94  Aligned_cols=32  Identities=28%  Similarity=0.382  Sum_probs=25.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      .|.|+|+.||||||+++.|.+ +     ...++|+|-=
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~-----g~~~i~~D~~   32 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-L-----GIPVIDADKI   32 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-C-----CCCEEecCHH
Confidence            378999999999999999988 2     3457888743

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>COG0218 Predicted GTPase [General function prediction only]

Probab=96.27  E-value=0.043  Score=50.01  Aligned_cols=115  Identities=17%  Similarity=0.211  Sum_probs=73.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH--HHcCC------cEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCce
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL--LQRYK------KVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKR  108 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l--l~~~~------~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~  108 (376)
                      .+-|.++|..|+|||||.+.|+|+-  .+.+.      .+-|.+.|.+           +..+|-|+.||.         
T Consensus        24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~-----------~~lVDlPGYGyA---------   83 (200)
T COG0218          24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE-----------LRLVDLPGYGYA---------   83 (200)
T ss_pred             CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc-----------EEEEeCCCcccc---------
Confidence            5789999999999999999999943  44332      3455555544           455666554332         


Q ss_pred             eEEcCCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccccccHHHHHHHHHHhCCCEEEEEec
Q 017141          109 CYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKINI  188 (376)
Q Consensus       109 ~~f~G~~sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~G~~ll~~~i~~~~p~~Vv~l~~  188 (376)
                             ..   |....+...+++..|-+.-+        ......++||.---++....+++ +.+...++..+|++..
T Consensus        84 -------kv---~k~~~e~w~~~i~~YL~~R~--------~L~~vvlliD~r~~~~~~D~em~-~~l~~~~i~~~vv~tK  144 (200)
T COG0218          84 -------KV---PKEVKEKWKKLIEEYLEKRA--------NLKGVVLLIDARHPPKDLDREMI-EFLLELGIPVIVVLTK  144 (200)
T ss_pred             -------cC---CHHHHHHHHHHHHHHHhhch--------hheEEEEEEECCCCCcHHHHHHH-HHHHHcCCCeEEEEEc
Confidence                   11   23445666666666644311        13567789999877776666555 4556677777777765


Q ss_pred             Cc
Q 017141          189 SF  190 (376)
Q Consensus       189 ~~  190 (376)
                      -+
T Consensus       145 ~D  146 (200)
T COG0218         145 AD  146 (200)
T ss_pred             cc
Confidence            43

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=96.26  E-value=0.0058  Score=54.40  Aligned_cols=29  Identities=28%  Similarity=0.409  Sum_probs=24.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKK   67 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~   67 (376)
                      +|+|.|++|+||||+++.+++++-.++.+
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~   29 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKGLP   29 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTCGG
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccCCc
Confidence            58999999999999999999998765443

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=96.24  E-value=0.0043  Score=62.65  Aligned_cols=33  Identities=30%  Similarity=0.402  Sum_probs=29.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL   71 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l   71 (376)
                      =|||.|++|+||||||..|++++.++|+-|-=+
T Consensus       265 GILIAG~PGaGKsTFaqAlAefy~~~GkiVKTm  297 (604)
T COG1855         265 GILIAGAPGAGKSTFAQALAEFYASQGKIVKTM  297 (604)
T ss_pred             ceEEecCCCCChhHHHHHHHHHHHhcCcEEeec
Confidence            499999999999999999999999998754443

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.24  E-value=0.0033  Score=57.93  Aligned_cols=42  Identities=21%  Similarity=0.285  Sum_probs=35.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      +|.++.|+||+|+|||||.|.|+-++.-.+.+|.|-..|..+
T Consensus        26 pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~   67 (259)
T COG4559          26 PGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNS   67 (259)
T ss_pred             CCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhh
Confidence            578999999999999999999999987677778886665543

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.24  E-value=0.0042  Score=55.85  Aligned_cols=25  Identities=16%  Similarity=0.275  Sum_probs=21.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +..++|+|+.||||||+.|.|+..+
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccC
Confidence            3578999999999999999997653

>PRK00300 gmk guanylate kinase; Provisional

Probab=96.23  E-value=0.0041  Score=56.42  Aligned_cols=26  Identities=19%  Similarity=0.328  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..|.|+|+.||||||+++.|+..+
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            57799999999999999999999974

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=96.21  E-value=0.011  Score=58.25  Aligned_cols=36  Identities=19%  Similarity=0.345  Sum_probs=27.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHH--cCCcEEEEc
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQ--RYKKVAYLD   72 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~--~~~~v~~lD   72 (376)
                      +..|+|+|+.|||||||.+.|++++..  .+.++..++
T Consensus       144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiE  181 (323)
T PRK13833        144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILE  181 (323)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEec
Confidence            457999999999999999999998753  234444444

>PRK07933 thymidylate kinase; Validated

Probab=96.20  E-value=0.0068  Score=55.97  Aligned_cols=35  Identities=31%  Similarity=0.341  Sum_probs=31.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      -|.|.|.-||||||+++.|+++|-.+|.+|.++.-
T Consensus         2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~   36 (213)
T PRK07933          2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAF   36 (213)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence            47899999999999999999999999988887654

>PRK06851 hypothetical protein; Provisional

Probab=96.20  E-value=0.032  Score=55.72  Aligned_cols=56  Identities=23%  Similarity=0.332  Sum_probs=41.6

Q ss_pred             CChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE--cCCCC
Q 017141           17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL--DTDVG   76 (376)
Q Consensus        17 ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l--DlD~G   76 (376)
                      .++......+.+...    ....+++.|++|+||||+++.+++.+.++|+.|-++  .+|+.
T Consensus        14 T~~Gf~s~~~~~~~~----~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~~   71 (367)
T PRK06851         14 TARGFYSLYDSIIDG----ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDND   71 (367)
T ss_pred             CCCchhhhhhhhccc----cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCC
Confidence            344555555555422    246789999999999999999999999999887766  55554

>PRK14528 adenylate kinase; Provisional

Probab=96.20  E-value=0.005  Score=55.55  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=21.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++|+|.|++||||||+|+.|+.++
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~   25 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERL   25 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998775

>PRK08116 hypothetical protein; Validated

Probab=96.19  E-value=0.0068  Score=58.01  Aligned_cols=36  Identities=19%  Similarity=0.307  Sum_probs=33.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      .-+++.|+.|+|||.|+..++|++.+++..|+|++.
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~  150 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF  150 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence            359999999999999999999999998989999874

>PRK02496 adk adenylate kinase; Provisional

Probab=96.18  E-value=0.0047  Score=55.21  Aligned_cols=24  Identities=25%  Similarity=0.236  Sum_probs=22.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+++|.|++||||||+|+.|+.++
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~   25 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHL   25 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999999875

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=96.17  E-value=0.0055  Score=55.53  Aligned_cols=53  Identities=15%  Similarity=0.265  Sum_probs=40.5

Q ss_pred             HHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           22 SDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        22 ~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      ..+++.+.-+-  .++.-++++|+.|+|||||.|.|.....-...++.+-+.|.+
T Consensus        15 ~~aL~~vs~~i--~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~   67 (223)
T COG2884          15 REALRDVSFHI--PKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLS   67 (223)
T ss_pred             chhhhCceEee--cCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecc
Confidence            45666554222  247789999999999999999999887666677888777765

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=96.17  E-value=0.0099  Score=55.13  Aligned_cols=51  Identities=27%  Similarity=0.381  Sum_probs=36.6

Q ss_pred             HHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEcCC
Q 017141           23 DAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTD   74 (376)
Q Consensus        23 ~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~lDlD   74 (376)
                      .+++.++.+.. .....++|.|++|+|||.|.+.++|++.+.  +.+|.|++++
T Consensus        21 ~~~~~ia~~~~-~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~   73 (219)
T PF00308_consen   21 AAAKAIAENPG-ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE   73 (219)
T ss_dssp             HHHHHHHHSTT-TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH
T ss_pred             HHHHHHHhcCC-CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH
Confidence            34455654321 123458999999999999999999999875  5678887653

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.17  E-value=0.0041  Score=52.45  Aligned_cols=27  Identities=33%  Similarity=0.533  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      ++.++.|+|+.|||||||.+.|+...-
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             CCCEEEEEccCCCccccceeeeccccc
Confidence            467999999999999999998887654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PLN02348 phosphoribulokinase

Probab=96.15  E-value=0.0081  Score=60.27  Aligned_cols=27  Identities=30%  Similarity=0.493  Sum_probs=24.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      .+..|.|.|+.|||||||++.|++.+-
T Consensus        48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         48 GTVVIGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            357888999999999999999999984

>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B

Probab=96.14  E-value=0.0084  Score=58.51  Aligned_cols=41  Identities=32%  Similarity=0.397  Sum_probs=36.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      +.+++.|.-|+||||++-.++=++.++|+++.++..||..+
T Consensus         2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~   42 (305)
T PF02374_consen    2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS   42 (305)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred             eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence            35778888899999999999999999999999999999864

...

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=96.14  E-value=0.017  Score=52.57  Aligned_cols=48  Identities=27%  Similarity=0.311  Sum_probs=35.5

Q ss_pred             hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141           20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL   71 (376)
Q Consensus        20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l   71 (376)
                      +=.++++.+..+.    ...++|.|+.|+||||+.+.+.+.+...+.+|.++
T Consensus         5 ~Q~~a~~~~l~~~----~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~   52 (196)
T PF13604_consen    5 EQREAVRAILTSG----DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGL   52 (196)
T ss_dssp             HHHHHHHHHHHCT----CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEE
T ss_pred             HHHHHHHHHHhcC----CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            3455666665322    35788899999999999999999998888777775

>PLN02199 shikimate kinase

Probab=96.14  E-value=0.0051  Score=59.53  Aligned_cols=33  Identities=27%  Similarity=0.490  Sum_probs=29.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|+++|..||||||+++.|++.+     ...|+|+|
T Consensus       102 ~~~I~LIG~~GSGKSTVgr~LA~~L-----g~~fIDtD  134 (303)
T PLN02199        102 GRSMYLVGMMGSGKTTVGKLMSKVL-----GYTFFDCD  134 (303)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh-----CCCEEehH
Confidence            6789999999999999999999987     55689998

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=96.12  E-value=0.0047  Score=56.16  Aligned_cols=38  Identities=26%  Similarity=0.465  Sum_probs=27.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .+..+++.|++||||||+++.+...+-  +....++|.|-
T Consensus        14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~   51 (199)
T PF06414_consen   14 KPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADE   51 (199)
T ss_dssp             S-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGG
T ss_pred             CCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHH
Confidence            366788889999999999999888764  56778888884

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=96.12  E-value=0.0078  Score=57.25  Aligned_cols=56  Identities=23%  Similarity=0.321  Sum_probs=40.6

Q ss_pred             hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHH--HcCCcEEEEcCCCCC
Q 017141           20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLL--QRYKKVAYLDTDVGQ   77 (376)
Q Consensus        20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll--~~~~~v~~lDlD~GQ   77 (376)
                      +.+++.+.+....  ....+|.|.|..|+||||||+.+++..-  +.+..++|+++....
T Consensus         4 ~~~~l~~~L~~~~--~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~   61 (287)
T PF00931_consen    4 EIEKLKDWLLDNS--NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNP   61 (287)
T ss_dssp             HHHHHHHHHHTTT--TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-S
T ss_pred             HHHHHHHHhhCCC--CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccc
Confidence            4556666666422  3468999999999999999999998843  344568888876443

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PLN02200 adenylate kinase family protein

Probab=96.11  E-value=0.0054  Score=57.54  Aligned_cols=26  Identities=31%  Similarity=0.551  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+.+|+|+|++||||||+|+.|+.++
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~   67 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETF   67 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            35688999999999999999998875

>PRK13764 ATPase; Provisional

Probab=96.11  E-value=0.0076  Score=63.82  Aligned_cols=38  Identities=26%  Similarity=0.338  Sum_probs=32.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      ...|+|+|++|||||||++.|++++...++.|..++ ||
T Consensus       257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiE-Dp  294 (602)
T PRK13764        257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTME-SP  294 (602)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEEC-CC
Confidence            356999999999999999999999987777776776 44

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.10  E-value=0.0033  Score=57.41  Aligned_cols=26  Identities=19%  Similarity=0.377  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.++.|+|+.|||||||++.|+..+
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47799999999999999999999864

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.10  E-value=0.0042  Score=55.82  Aligned_cols=34  Identities=24%  Similarity=0.221  Sum_probs=26.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA   69 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~   69 (376)
                      ++.++.|+|+.|+|||||.|.|+..+--...++.
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~   57 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDE   57 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEE
Confidence            4779999999999999999999886533333343

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=96.09  E-value=0.011  Score=57.75  Aligned_cols=28  Identities=29%  Similarity=0.350  Sum_probs=24.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRY   65 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~   65 (376)
                      +.+++.||+|+||||+++.+++.+...+
T Consensus        37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~   64 (337)
T PRK12402         37 PHLLVQGPPGSGKTAAVRALARELYGDP   64 (337)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence            4699999999999999999999986443

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.09  E-value=0.0054  Score=54.65  Aligned_cols=25  Identities=24%  Similarity=0.498  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +|-+++|.||.|+|||||.|.+++-
T Consensus        28 ~Ge~iaitGPSG~GKStllk~va~L   52 (223)
T COG4619          28 AGEFIAITGPSGCGKSTLLKIVASL   52 (223)
T ss_pred             CCceEEEeCCCCccHHHHHHHHHhc
Confidence            5789999999999999999999884

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=96.09  E-value=0.0074  Score=56.14  Aligned_cols=36  Identities=28%  Similarity=0.344  Sum_probs=30.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      +..++|+|+.|+||||+++.|.       .++.+++.|-+-..
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~~~~~   47 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDMSSKV   47 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcC-------CCCEEEeccccchh
Confidence            5789999999999999999884       46889999976444

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.07  E-value=0.0056  Score=53.60  Aligned_cols=22  Identities=32%  Similarity=0.360  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ||.|+|+.++|||||++.|..+
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            6899999999999999999977

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=96.06  E-value=0.0093  Score=56.77  Aligned_cols=36  Identities=22%  Similarity=0.288  Sum_probs=30.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      +..|++.|++|+||||+++.|++.+   +..+..++++.
T Consensus        21 g~~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~   56 (262)
T TIGR02640        21 GYPVHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDA   56 (262)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCc
Confidence            4578999999999999999999854   77888888865

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=96.05  E-value=0.0066  Score=63.15  Aligned_cols=34  Identities=38%  Similarity=0.574  Sum_probs=28.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+.+|.|.|+.||||||+++.|++++     ...++|.|
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l-----~~~~~d~g  316 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKL-----GLLYLDTG  316 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc-----CCeEecCC
Confidence            57899999999999999999999997     35666654

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=96.04  E-value=0.0064  Score=55.92  Aligned_cols=39  Identities=26%  Similarity=0.192  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF   80 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~   80 (376)
                      +..|-++|+.||||||++++|...+     ...++|+|.=-.++
T Consensus         6 ~~~IglTG~iGsGKStv~~~l~~~l-----g~~vidaD~i~~~l   44 (204)
T PRK14733          6 TYPIGITGGIASGKSTATRILKEKL-----NLNVVCADTISREI   44 (204)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHc-----CCeEEeccHHHHHH
Confidence            4579999999999999999998754     34488998664444

>PRK11823 DNA repair protein RadA; Provisional

Probab=96.04  E-value=0.0095  Score=61.19  Aligned_cols=39  Identities=26%  Similarity=0.385  Sum_probs=35.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ++..++|.|++|+|||||+..++..+.+++.+|+|++..
T Consensus        79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E  117 (446)
T PRK11823         79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE  117 (446)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            467999999999999999999999988889999999874

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=96.03  E-value=0.099  Score=48.24  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=20.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+++|.|+.++|||||.|.+.-
T Consensus        30 ~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHHH
Confidence            7899999999999999999984

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.02  E-value=0.0048  Score=56.57  Aligned_cols=35  Identities=20%  Similarity=0.151  Sum_probs=26.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|+|||||.|.|+..+--...++.+
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~   63 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRV   63 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEE
Confidence            47899999999999999999999865323334443

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR00416 sms DNA repair protein RadA

Probab=96.01  E-value=0.0098  Score=61.22  Aligned_cols=39  Identities=26%  Similarity=0.405  Sum_probs=35.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ++..++|.|++|+|||||+..++..+.+.+.+|+|++.+
T Consensus        93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E  131 (454)
T TIGR00416        93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE  131 (454)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc
Confidence            477999999999999999999999888888899999875

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.00  E-value=0.0041  Score=56.87  Aligned_cols=35  Identities=20%  Similarity=0.301  Sum_probs=27.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|+|||||++.|+..+--...++.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~   59 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI   59 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            47799999999999999999999865333445554

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd04163 Era Era subfamily

Probab=96.00  E-value=0.014  Score=49.60  Aligned_cols=23  Identities=35%  Similarity=0.462  Sum_probs=20.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|.++|+.|+|||||+..|++
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~   25 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVG   25 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            36899999999999999988764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=95.99  E-value=0.0048  Score=58.59  Aligned_cols=41  Identities=24%  Similarity=0.311  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      ++..+-|+||.|||||||.|.|+..+--+...|.+=+-|+.
T Consensus        27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~   67 (258)
T COG1120          27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIA   67 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchh
Confidence            47899999999999999999999987545555655444443

>PRK12608 transcription termination factor Rho; Provisional

Probab=95.99  E-value=0.017  Score=57.74  Aligned_cols=43  Identities=14%  Similarity=0.153  Sum_probs=33.4

Q ss_pred             HHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017141           22 SDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKK   67 (376)
Q Consensus        22 ~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~   67 (376)
                      .+++|.+.--   ..|.|++|+|+.|+||||+++.+++.+.+.+..
T Consensus       121 ~RvID~l~Pi---GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~d  163 (380)
T PRK12608        121 MRVVDLVAPI---GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPE  163 (380)
T ss_pred             Hhhhhheeec---CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence            4466655422   348899999999999999999999998776433

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=95.99  E-value=0.0044  Score=56.69  Aligned_cols=35  Identities=23%  Similarity=0.379  Sum_probs=27.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|.++.|+|+.|+|||||.+.|+..+--...++.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~   59 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI   59 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence            47799999999999999999999865333344444

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=95.99  E-value=0.063  Score=49.61  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=20.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 017141           40 AFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      |.|-|.-||||||+++.|++++
T Consensus         2 I~iEG~~GsGKSTl~~~L~~~l   23 (219)
T cd02030           2 ITVDGNIASGKGKLAKELAEKL   23 (219)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            7899999999999999999997

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=95.96  E-value=0.014  Score=58.60  Aligned_cols=58  Identities=22%  Similarity=0.234  Sum_probs=41.9

Q ss_pred             ChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHH--HcCCcEEEEcCCC
Q 017141           18 PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLL--QRYKKVAYLDTDV   75 (376)
Q Consensus        18 p~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll--~~~~~v~~lDlD~   75 (376)
                      ++-|......+..+....++..|+++||+|+||||-..-|+.+..  .+.++|+++-+|.
T Consensus       184 ~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt  243 (407)
T COG1419         184 SEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT  243 (407)
T ss_pred             HHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc
Confidence            446777776665442112367999999999999987666666665  6678899998883

>PLN02924 thymidylate kinase

Probab=95.95  E-value=0.013  Score=54.46  Aligned_cols=36  Identities=19%  Similarity=0.166  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL   71 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l   71 (376)
                      .+.-|.|.|.-||||||.++.|.+++-..|.+|.++
T Consensus        15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~   50 (220)
T PLN02924         15 RGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELW   50 (220)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceee
Confidence            467899999999999999999999998888877654

>cd04155 Arl3 Arl3 subfamily

Probab=95.94  E-value=0.0063  Score=53.09  Aligned_cols=24  Identities=38%  Similarity=0.546  Sum_probs=21.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|+.|+|||||.+.|.+.
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcC
Confidence            678999999999999999988764

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=95.94  E-value=0.0059  Score=53.91  Aligned_cols=26  Identities=27%  Similarity=0.457  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.++.|+|+.|+|||||++.|+..+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999998865

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=95.94  E-value=0.0092  Score=63.93  Aligned_cols=40  Identities=23%  Similarity=0.304  Sum_probs=36.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .+..|+++|..||||||+++.|++++-..+..+.++|-|-
T Consensus       459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~  498 (632)
T PRK05506        459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN  498 (632)
T ss_pred             CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh
Confidence            4789999999999999999999999987788899999985

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=95.93  E-value=0.12  Score=47.02  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=21.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +.+++|+|+.|+|||||.|.++.
T Consensus        29 ~~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          29 GRLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             CeEEEEECCCCCccHHHHHHHHH
Confidence            46999999999999999999993

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=95.93  E-value=0.0085  Score=53.44  Aligned_cols=31  Identities=23%  Similarity=0.430  Sum_probs=24.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL   71 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l   71 (376)
                      .+++|.|+.+|||||||..|+..+   +.++.|+
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~---~~~~~~i   32 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQS---GLQVLYI   32 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHc---CCCcEeC
Confidence            479999999999999999997653   3345553

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=95.92  E-value=0.0075  Score=55.71  Aligned_cols=26  Identities=31%  Similarity=0.483  Sum_probs=24.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|..+.|+|+.|+|||||++.|+..+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            47899999999999999999999876

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=95.91  E-value=0.0067  Score=53.05  Aligned_cols=31  Identities=29%  Similarity=0.444  Sum_probs=25.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +|.|.|+.||||||+++.|++.+     ..-++|.|
T Consensus         2 iI~i~G~~GSGKstia~~la~~l-----g~~~~~~~   32 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKL-----SLKLISAG   32 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc-----CCceecHH
Confidence            68999999999999999999875     33466654

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=95.91  E-value=0.0072  Score=49.43  Aligned_cols=26  Identities=31%  Similarity=0.556  Sum_probs=23.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHcC
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQRY   65 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~~~   65 (376)
                      |.|.|++|+|||++++.|+..+++..
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~~~   26 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLKHI   26 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            57899999999999999999998754

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=95.91  E-value=0.0046  Score=56.82  Aligned_cols=35  Identities=23%  Similarity=0.409  Sum_probs=27.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|||||||.+.|+..+--....+.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   59 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRF   59 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence            47899999999999999999998764323334544

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.90  E-value=0.006  Score=55.16  Aligned_cols=40  Identities=25%  Similarity=0.630  Sum_probs=29.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      ++.++.|+|+.|+|||||.|.|+..+--...++.+-+.|+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i   64 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNI   64 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCccc
Confidence            4779999999999999999999986533334455433343

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=95.90  E-value=0.0079  Score=55.63  Aligned_cols=35  Identities=34%  Similarity=0.389  Sum_probs=28.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      -.|-|.|+.||||||+|+.|.+.+-.  .++.++-+|
T Consensus         9 iiIgIaG~SgSGKTTva~~l~~~~~~--~~~~~I~~D   43 (218)
T COG0572           9 IIIGIAGGSGSGKTTVAKELSEQLGV--EKVVVISLD   43 (218)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHhCc--CcceEeecc
Confidence            57889999999999999999998732  266666655

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=95.90  E-value=0.0054  Score=56.21  Aligned_cols=26  Identities=23%  Similarity=0.530  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|.++.|+|+.|||||||.|.|+..+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999999854

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=95.89  E-value=0.013  Score=58.86  Aligned_cols=39  Identities=28%  Similarity=0.437  Sum_probs=35.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ++..++|.|++|+|||||+..++..+.+.+.+|+|++..
T Consensus        81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E  119 (372)
T cd01121          81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE  119 (372)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            467999999999999999999999988888899999875

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=95.89  E-value=0.006  Score=57.11  Aligned_cols=41  Identities=20%  Similarity=0.181  Sum_probs=32.0

Q ss_pred             hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      .|-.+++.++-+-  .+|-++-|+|+.||||||++|.|+-+.-
T Consensus        18 ~~~~~l~~VS~~i--~~Ge~lgivGeSGsGKSTL~r~l~Gl~~   58 (252)
T COG1124          18 FAFHALNNVSLEI--ERGETLGIVGESGSGKSTLARLLAGLEK   58 (252)
T ss_pred             chhhhhcceeEEe--cCCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence            4666777765332  2478999999999999999999998753

>TIGR00152 dephospho-CoA kinase

Probab=95.88  E-value=0.0075  Score=54.23  Aligned_cols=33  Identities=24%  Similarity=0.304  Sum_probs=26.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      +|.|+|+.||||||+++.|.+..     ...++|+|-=
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~-----~~~~i~~D~~   33 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKY-----HFPVIDADKI   33 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhc-----CCeEEeCCHH
Confidence            37899999999999999998863     3457888844

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>cd00154 Rab Rab family

Probab=95.88  E-value=0.0071  Score=51.00  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +|+++|++++|||||...|.+.
T Consensus         2 ~i~~~G~~~~GKStl~~~l~~~   23 (159)
T cd00154           2 KIVLIGDSGVGKTSLLLRFVDG   23 (159)
T ss_pred             eEEEECCCCCCHHHHHHHHHhC
Confidence            7999999999999999988754

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04113 Rab4 Rab4 subfamily

Probab=95.87  E-value=0.0071  Score=52.11  Aligned_cols=21  Identities=24%  Similarity=0.404  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +|+|+|++++|||||++.|++
T Consensus         2 ki~v~G~~~vGKTsli~~l~~   22 (161)
T cd04113           2 KFIIIGSSGTGKSCLLHRFVE   22 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            699999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=95.86  E-value=0.0056  Score=54.30  Aligned_cols=26  Identities=27%  Similarity=0.387  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+.|+|+.|+|||||.+.|+...
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            47799999999999999999998754

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=95.86  E-value=0.0058  Score=55.89  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.++.|+|+.|||||||.+.|+..+
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47799999999999999999998754

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=95.86  E-value=0.015  Score=58.87  Aligned_cols=38  Identities=29%  Similarity=0.423  Sum_probs=32.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~lDlD   74 (376)
                      ...+++.|+.|+|||+|++.++|.+.+.  +.+|.|++++
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~  175 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE  175 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence            3468999999999999999999999876  5678887653

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=95.86  E-value=0.026  Score=58.88  Aligned_cols=59  Identities=15%  Similarity=0.231  Sum_probs=43.1

Q ss_pred             cCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCCCC
Q 017141           16 YIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDVG   76 (376)
Q Consensus        16 ~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~G   76 (376)
                      -+|-.+. -+|.+...+ -..+..++|.|++|+|||||+..++...+++ |.+|+|+.++-.
T Consensus        12 ri~TGI~-~LD~~l~GG-~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~   71 (509)
T PRK09302         12 KLPTGIE-GFDDITHGG-LPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEES   71 (509)
T ss_pred             cccCCch-hHHHhhcCC-CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence            4444433 344454322 2347899999999999999999998887777 899999988654

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.85  E-value=0.0056  Score=56.95  Aligned_cols=35  Identities=29%  Similarity=0.323  Sum_probs=26.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|.++.|+|+.|+|||||++.|+..+--...++.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~   59 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI   59 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            47899999999999999999998764322334443

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=95.85  E-value=0.0055  Score=56.71  Aligned_cols=50  Identities=12%  Similarity=0.229  Sum_probs=33.7

Q ss_pred             HHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHH---HcCCcEEEEc
Q 017141           21 WSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLL---QRYKKVAYLD   72 (376)
Q Consensus        21 W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll---~~~~~v~~lD   72 (376)
                      +..+++.+.-+-  .++..+.|+|+.|+|||||++.|+..+-   -...++.+-+
T Consensus        19 ~~~~l~~vsl~i--~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g   71 (226)
T cd03234          19 YARILNDVSLHV--ESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG   71 (226)
T ss_pred             ccccccCceEEE--cCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECC
Confidence            345555443211  2477999999999999999999998764   2334455433

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=95.85  E-value=0.011  Score=56.22  Aligned_cols=27  Identities=26%  Similarity=0.263  Sum_probs=24.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      .+.+++.||+|+||||+||.+++.+.+
T Consensus        42 ~~~vll~GppGtGKTtlA~~ia~~l~~   68 (261)
T TIGR02881        42 VLHMIFKGNPGTGKTTVARILGKLFKE   68 (261)
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            467999999999999999999998743

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK13695 putative NTPase; Provisional

Probab=95.84  E-value=0.012  Score=52.06  Aligned_cols=30  Identities=30%  Similarity=0.295  Sum_probs=26.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcE
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKV   68 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v   68 (376)
                      +|+++|+.|+|||||++.+++.+...|..+
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~   31 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV   31 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence            689999999999999999999977656554

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=95.84  E-value=0.012  Score=52.53  Aligned_cols=29  Identities=24%  Similarity=0.457  Sum_probs=25.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL   71 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l   71 (376)
                      ++|.|+.+|||||||..++-.   .+.+++|+
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~   30 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAE---LGGPVTYI   30 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHh---cCCCeEEE
Confidence            799999999999999988754   56688888

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=95.83  E-value=0.0061  Score=55.34  Aligned_cols=26  Identities=19%  Similarity=0.164  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|.++.|+|+.|+|||||.+.|+..+
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            47799999999999999999999754

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK13973 thymidylate kinase; Provisional

Probab=95.83  E-value=0.015  Score=53.64  Aligned_cols=35  Identities=23%  Similarity=0.127  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL   71 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l   71 (376)
                      |.-|.|.|..||||||.++.|..+|-+.|.++.+.
T Consensus         3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~   37 (213)
T PRK13973          3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT   37 (213)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            46789999999999999999999998888877654

>cd01862 Rab7 Rab7 subfamily

Probab=95.83  E-value=0.0069  Score=52.57  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +|+|+|+.|+|||||++.|.+.
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~   23 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNK   23 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6999999999999999998875

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=95.83  E-value=0.0065  Score=55.44  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+.|+|+.|||||||.+.|+..+
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999999754

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=95.83  E-value=0.0087  Score=53.06  Aligned_cols=26  Identities=31%  Similarity=0.528  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+.|+|+.|+|||||.+.|+..+
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            47799999999999999999998754

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=95.82  E-value=0.0062  Score=54.73  Aligned_cols=26  Identities=31%  Similarity=0.438  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+.|+|+.|||||||.+.|+...
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47799999999999999999998754

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional

Probab=95.82  E-value=0.017  Score=61.43  Aligned_cols=37  Identities=30%  Similarity=0.397  Sum_probs=34.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      .+.+-|+|.+|||||||+..|+.+|-++|++|+++.-
T Consensus        10 ~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh   46 (597)
T PRK14491         10 IPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKH   46 (597)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEc
Confidence            4688999999999999999999999999999999876

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=95.81  E-value=0.0076  Score=55.41  Aligned_cols=34  Identities=18%  Similarity=0.208  Sum_probs=26.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA   69 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~   69 (376)
                      ++..+.|+|+.|+|||||++.|+...--...++.
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~   62 (221)
T cd03244          29 PGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL   62 (221)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE
Confidence            4779999999999999999999876433333343

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK01184 hypothetical protein; Provisional

Probab=95.80  E-value=0.0087  Score=53.43  Aligned_cols=19  Identities=32%  Similarity=0.433  Sum_probs=17.0

Q ss_pred             CEEEEEcCCCCcHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRH   56 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~   56 (376)
                      ..|+|+|+.||||||++++
T Consensus         2 ~~i~l~G~~GsGKsT~a~~   20 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSKI   20 (184)
T ss_pred             cEEEEECCCCCCHHHHHHH
Confidence            3789999999999999983

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=95.80  E-value=0.007  Score=56.47  Aligned_cols=35  Identities=20%  Similarity=0.311  Sum_probs=26.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|||||||.+.|+..+--...++.+
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   61 (243)
T TIGR02315        27 PGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL   61 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEE
Confidence            47899999999999999999998764323334443

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.80  E-value=0.007  Score=55.22  Aligned_cols=26  Identities=31%  Similarity=0.476  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.++.|+|+.|+|||||.+.|+..+
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            47799999999999999999999764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK08356 hypothetical protein; Provisional

Probab=95.79  E-value=0.0079  Score=54.51  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=19.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLV   58 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~   58 (376)
                      ...|+|+|+.||||||+|++|.
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~   26 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFE   26 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHH
Confidence            4578999999999999999995

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.79  E-value=0.0065  Score=55.28  Aligned_cols=26  Identities=27%  Similarity=0.473  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.++.|+|+.|||||||.+.|+...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999998754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=95.79  E-value=0.0062  Score=54.40  Aligned_cols=26  Identities=31%  Similarity=0.445  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.++.|+|+.|+|||||.|.|+..+
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999998753

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=95.79  E-value=0.013  Score=60.82  Aligned_cols=39  Identities=15%  Similarity=0.210  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD   74 (376)
                      .+..+||.|++|+||||||..++-..+++ |.++.|+.++
T Consensus        20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e   59 (484)
T TIGR02655        20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE   59 (484)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            47799999999999999999877655555 8899998875

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=95.79  E-value=0.0066  Score=55.88  Aligned_cols=26  Identities=31%  Similarity=0.333  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+.|+|+.|+|||||.+.|+..+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47799999999999999999998754

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=95.78  E-value=0.0096  Score=61.11  Aligned_cols=37  Identities=22%  Similarity=0.407  Sum_probs=33.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .-+++.|+.|+|||+|++.++|++.+.+.+|.|++.+
T Consensus       142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~  178 (445)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE  178 (445)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence            4589999999999999999999999888999998864

>cd00157 Rho Rho (Ras homology) family

Probab=95.78  E-value=0.0081  Score=52.05  Aligned_cols=23  Identities=17%  Similarity=0.138  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|+|+|++|+|||||.+.|.+.-
T Consensus         2 ki~i~G~~~~GKSsli~~l~~~~   24 (171)
T cd00157           2 KIVVVGDGAVGKTCLLISYTTGK   24 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            69999999999999999887753

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=95.78  E-value=0.0061  Score=56.58  Aligned_cols=35  Identities=23%  Similarity=0.161  Sum_probs=27.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      ++..+.|+|+.|||||||++.|+..+--...++.+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~   64 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLV   64 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence            47899999999999999999998765333334444

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.78  E-value=0.0061  Score=54.53  Aligned_cols=35  Identities=17%  Similarity=0.192  Sum_probs=26.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      ++.++.|+|+.|+|||||.+.|+...--...++.+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~   59 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLRPPASGEITL   59 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence            47799999999999999999999865323334433

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=95.78  E-value=0.0084  Score=51.19  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=19.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|..|+|||||.+.|++
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~   23 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQ   23 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3799999999999999888875

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=95.77  E-value=0.0061  Score=56.46  Aligned_cols=35  Identities=20%  Similarity=0.348  Sum_probs=27.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|.++.|+|+.|||||||.+.|+..+--...++.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~   59 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL   59 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence            47899999999999999999999865333344544

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=95.75  E-value=0.0071  Score=55.56  Aligned_cols=34  Identities=24%  Similarity=0.133  Sum_probs=26.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA   69 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~   69 (376)
                      +|..+.|+|+.|||||||.+.|+...--....+.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~   60 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY   60 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            4779999999999999999999986432333343

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.75  E-value=0.0071  Score=54.90  Aligned_cols=26  Identities=23%  Similarity=0.419  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|.++.|+|+.|+|||||.+.|+...
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999999998754

>smart00763 AAA_PrkA PrkA AAA domain

Probab=95.75  E-value=0.013  Score=58.31  Aligned_cols=27  Identities=22%  Similarity=0.336  Sum_probs=24.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      ...++++||+|+|||||++.|++.+-+
T Consensus        78 r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       78 KQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            467899999999999999999999854

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=95.75  E-value=0.0069  Score=55.65  Aligned_cols=26  Identities=27%  Similarity=0.293  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.++.|+|+.|+|||||.+.|+..+
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998754

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=95.75  E-value=0.0064  Score=55.55  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=26.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      ++ ++.|+|+.|+|||||.+.|+..+--...++.+
T Consensus        25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   58 (211)
T cd03264          25 PG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRI   58 (211)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEE
Confidence            36 89999999999999999998754323334544

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=95.74  E-value=0.017  Score=56.38  Aligned_cols=37  Identities=16%  Similarity=0.169  Sum_probs=33.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      +.-+++.|+.|+|||.|+..++|.+.++|.+|.|+..
T Consensus       156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~  192 (306)
T PRK08939        156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF  192 (306)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH
Confidence            4579999999999999999999999999999998754

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=95.73  E-value=0.0074  Score=57.97  Aligned_cols=33  Identities=30%  Similarity=0.485  Sum_probs=24.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      |-|+|+.|||||||++.|++.+-..  .+.++.+|
T Consensus         2 igI~G~sGsGKSTl~~~L~~ll~~~--~~~vi~~D   34 (273)
T cd02026           2 IGVAGDSGCGKSTFLRRLTSLFGSD--LVTVICLD   34 (273)
T ss_pred             EEEECCCCCCHHHHHHHHHHhhCCC--ceEEEECc
Confidence            6799999999999999999876322  23344444

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=95.73  E-value=0.014  Score=60.45  Aligned_cols=39  Identities=15%  Similarity=0.240  Sum_probs=35.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ++..++|.|++|+|||||+..++..++++|.+++|+-.+
T Consensus       262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~e  300 (484)
T TIGR02655       262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYE  300 (484)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence            477999999999999999999999999999999997665

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=95.73  E-value=0.019  Score=56.14  Aligned_cols=49  Identities=14%  Similarity=0.166  Sum_probs=37.8

Q ss_pred             HHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           24 AADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        24 ~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      +++.+.......+..|+++.|++|||||++...++.|+..+++-|++|.
T Consensus        10 l~~~l~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~~wiVl~vp   58 (309)
T PF10236_consen   10 LINKLKEADKSSKNNRYVLTGERGSGKSVLLAQAVHYARENGWIVLYVP   58 (309)
T ss_pred             HHHHHHHhcccCCceEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEcC
Confidence            3444433223345789999999999999999999999999988777753

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=95.73  E-value=0.0094  Score=54.36  Aligned_cols=26  Identities=27%  Similarity=0.370  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|.++.|+|+.|||||||.+.|+..+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            47799999999999999999999754

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=95.73  E-value=0.0081  Score=55.52  Aligned_cols=26  Identities=31%  Similarity=0.437  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|.++.|+|+.|+|||||.+.|+..+
T Consensus        28 ~G~~~~i~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254          28 PGETVAIVGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            47799999999999999999999765

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=95.72  E-value=0.0093  Score=54.49  Aligned_cols=25  Identities=32%  Similarity=0.416  Sum_probs=22.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +..|+|+|.+|+||||+|+.|+..+
T Consensus         3 ~~~i~i~G~~G~GKst~a~~l~~~~   27 (197)
T PRK12339          3 STIHFIGGIPGVGKTSISGYIARHR   27 (197)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4689999999999999999999985

>PRK04040 adenylate kinase; Provisional

Probab=95.71  E-value=0.01  Score=53.84  Aligned_cols=25  Identities=24%  Similarity=0.360  Sum_probs=23.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +.+|+|.|..||||||+++.|++.+
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l   26 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKL   26 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999999987

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=95.71  E-value=0.0074  Score=55.89  Aligned_cols=34  Identities=24%  Similarity=0.226  Sum_probs=26.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA   69 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~   69 (376)
                      +|.++.|+|+.|||||||.|.|+..+--...++.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~   58 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL   58 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            4779999999999999999999976532333443

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=95.71  E-value=0.0091  Score=55.38  Aligned_cols=35  Identities=11%  Similarity=0.149  Sum_probs=27.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|+|||||++.|+..+--...++.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~   61 (234)
T cd03251          27 AGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILI   61 (234)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEE
Confidence            47799999999999999999998775333334443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=95.71  E-value=0.0063  Score=56.77  Aligned_cols=35  Identities=17%  Similarity=0.277  Sum_probs=27.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      ++..+.|+|+.|+|||||++.|+..+--...++.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   61 (239)
T cd03296          27 SGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF   61 (239)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            47899999999999999999999864333344544

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.70  E-value=0.019  Score=58.50  Aligned_cols=123  Identities=16%  Similarity=0.175  Sum_probs=74.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCC---CCC--CCCCCCCcee
Q 017141           35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTP---DLT--IPCLKTPKRC  109 (376)
Q Consensus        35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~---~~~--~~~~~~p~~~  109 (376)
                      ..+.+|.+||-.|+||||=..-++=||++.+.+|++.-||+=-+          ..+++...   .+.  +.++ -+...
T Consensus       376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRs----------GAvEQLrtHv~rl~~l~~~~-v~lfe  444 (587)
T KOG0781|consen  376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRS----------GAVEQLRTHVERLSALHGTM-VELFE  444 (587)
T ss_pred             CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhh----------hHHHHHHHHHHHHHHhccch-hHHHh
Confidence            35779999999999999999999999999999999999995322          22332110   000  0000 00000


Q ss_pred             EEcCCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCcccccc--HHHHHHHHHHhCCCEEEEEe
Q 017141          110 YFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIG--YDILVDMLKYITPTHVVKIN  187 (376)
Q Consensus       110 ~f~G~~sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~G--~~ll~~~i~~~~p~~Vv~l~  187 (376)
                      -=||-     ++.   ..+++.++ +.++           ..-..++|||-|-...--  ..-|..+++.-+||+|++++
T Consensus       445 kGYgk-----d~a---~vak~AI~-~a~~-----------~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vg  504 (587)
T KOG0781|consen  445 KGYGK-----DAA---GVAKEAIQ-EARN-----------QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVG  504 (587)
T ss_pred             hhcCC-----ChH---HHHHHHHH-HHHh-----------cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEeh
Confidence            01221     111   11111111 1111           133468999999887532  34677899999999999988


Q ss_pred             c
Q 017141          188 I  188 (376)
Q Consensus       188 ~  188 (376)
                      .
T Consensus       505 e  505 (587)
T KOG0781|consen  505 E  505 (587)
T ss_pred             h
Confidence            4

>smart00175 RAB Rab subfamily of small GTPases

Probab=95.70  E-value=0.0085  Score=51.46  Aligned_cols=22  Identities=14%  Similarity=0.314  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +|+|+|+.|+|||||.+.|++.
T Consensus         2 kv~v~G~~~~GKTtli~~l~~~   23 (164)
T smart00175        2 KIILIGDSGVGKSSLLSRFTDG   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7999999999999999988754

Rab GTPases are implicated in vesicle trafficking.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=95.70  E-value=0.0069  Score=55.75  Aligned_cols=35  Identities=20%  Similarity=0.317  Sum_probs=26.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|||||||.+.|+..+--...++.+
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   63 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLV   63 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            47799999999999999999999764323334443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=95.70  E-value=0.0068  Score=55.46  Aligned_cols=35  Identities=20%  Similarity=0.363  Sum_probs=26.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      ++.++.|+|+.|||||||.+.|+..+--...++.+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~   58 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV   58 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence            47899999999999999999998764322334443

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=95.70  E-value=0.0062  Score=56.13  Aligned_cols=26  Identities=23%  Similarity=0.410  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|.++.|+|+.|+|||||.+.|+...
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          30 KGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999999754

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.69  E-value=0.0059  Score=57.14  Aligned_cols=35  Identities=17%  Similarity=0.211  Sum_probs=27.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|||||||+|.|+..+--...+|.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~   62 (241)
T PRK14250         28 GGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI   62 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            47799999999999999999999854323334444

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=95.69  E-value=0.019  Score=56.57  Aligned_cols=58  Identities=10%  Similarity=0.105  Sum_probs=42.1

Q ss_pred             ccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           15 IYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        15 ~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +--.+.|.++.+.+..-..  ...-|||+|.+|+||+++||.+-+.--+.+..-..+||.
T Consensus         9 iG~S~~~~~~~~~i~~~a~--~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~   66 (326)
T PRK11608          9 LGEANSFLEVLEQVSRLAP--LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA   66 (326)
T ss_pred             EECCHHHHHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCC
Confidence            3456789999988764332  245699999999999999999987554444555566665

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=95.69  E-value=0.014  Score=56.88  Aligned_cols=39  Identities=26%  Similarity=0.319  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHH------cCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ------RYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~------~~~~v~~lDlD   74 (376)
                      .+..+.|+|++|+||||||-.++-....      .+.+|+|+|..
T Consensus        94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te  138 (310)
T TIGR02236        94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTE  138 (310)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECC
Confidence            3678999999999999999999766542      12489999985

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>CHL00181 cbbX CbbX; Provisional

Probab=95.69  E-value=0.014  Score=56.36  Aligned_cols=29  Identities=24%  Similarity=0.362  Sum_probs=25.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR   64 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~   64 (376)
                      .+..+++.|++|+||||+||.++..+...
T Consensus        58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~   86 (287)
T CHL00181         58 PGLHMSFTGSPGTGKTTVALKMADILYKL   86 (287)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            35679999999999999999999988654

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=95.69  E-value=0.0068  Score=56.28  Aligned_cols=26  Identities=31%  Similarity=0.418  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|.++.|+|+.|||||||.+.|+..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            47799999999999999999998754

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=95.68  E-value=0.009  Score=53.20  Aligned_cols=26  Identities=23%  Similarity=0.248  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+.|+|+.|+|||||+|.|+...
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            47799999999999999999998764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=95.68  E-value=0.0091  Score=52.84  Aligned_cols=26  Identities=27%  Similarity=0.451  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+.|+|+.|+|||||.|.|+..+
T Consensus        27 ~G~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          27 PGEKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999999999864

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=95.68  E-value=0.017  Score=55.92  Aligned_cols=42  Identities=17%  Similarity=0.141  Sum_probs=35.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      ....|-|+|+.|||||||...|++.+... .++++++-|.+..
T Consensus       103 ~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t~  144 (290)
T PRK10463        103 KQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTV  144 (290)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCcH
Confidence            47899999999999999999999997544 5899999987643

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=95.68  E-value=0.0091  Score=52.01  Aligned_cols=26  Identities=23%  Similarity=0.432  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ..|.|||+|-+|+||||||..|+...
T Consensus         6 ~~PNILvtGTPG~GKstl~~~lae~~   31 (176)
T KOG3347|consen    6 ERPNILVTGTPGTGKSTLAERLAEKT   31 (176)
T ss_pred             cCCCEEEeCCCCCCchhHHHHHHHHh
Confidence            36899999999999999999999543

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=95.68  E-value=0.013  Score=57.56  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=23.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      +..++|+|+.|||||||++.|+++..
T Consensus       148 ~~~ilI~G~tGSGKTTll~aL~~~~~  173 (319)
T PRK13894        148 HRNILVIGGTGSGKTTLVNAIINEMV  173 (319)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhhh
Confidence            46899999999999999999998764

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=95.68  E-value=0.015  Score=54.88  Aligned_cols=45  Identities=24%  Similarity=0.312  Sum_probs=31.7

Q ss_pred             CChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        17 ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      -.+.-.+++..+..... ..+..++|+|+.|+||||+++.+++.+-
T Consensus        24 ~~~~~~~~~~~l~~~~~-~~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        24 PSKGHKRAMAYLEYGLS-QREGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCHHHHHHHHHHHHHHh-cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            33455666666543211 1245799999999999999999988864

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=95.68  E-value=0.011  Score=59.89  Aligned_cols=44  Identities=23%  Similarity=0.564  Sum_probs=33.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEE
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLS   87 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vS   87 (376)
                      +..|+++|++|+||||++|.|+..+     ..-|+.+|  ..+|+-+|.+.
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l-----~~~fi~vD--~t~f~e~GyvG   93 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLA-----NAPFIKVE--ATKFTEVGYVG   93 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh-----CChheeec--chhhccCCccc
Confidence            5789999999999999999999986     45566665  44566666544

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=95.67  E-value=0.0066  Score=56.43  Aligned_cols=26  Identities=23%  Similarity=0.264  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+.|+|+.|||||||.+.|+..+
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         34 EGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            47799999999999999999999754

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=95.67  E-value=0.0078  Score=56.02  Aligned_cols=35  Identities=23%  Similarity=0.308  Sum_probs=26.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|||||||.+.|+..+--....+.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   60 (241)
T cd03256          26 PGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI   60 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence            47899999999999999999999864323334443

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01860 Rab5_related Rab5-related subfamily

Probab=95.67  E-value=0.0092  Score=51.34  Aligned_cols=22  Identities=18%  Similarity=0.329  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +|+|+|+.++|||||.+.|++.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (163)
T cd01860           3 KLVLLGDSSVGKSSLVLRFVKN   24 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7999999999999999888753

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=95.67  E-value=0.0097  Score=55.09  Aligned_cols=26  Identities=23%  Similarity=0.575  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.++.|+|+.|+|||||++.|+...
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         32 AGEFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            47899999999999999999998753

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=95.66  E-value=0.0078  Score=58.06  Aligned_cols=26  Identities=31%  Similarity=0.344  Sum_probs=22.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      -+|||+|.+|+|||||.+.|++..+.
T Consensus         5 fnImVvG~sG~GKTTFIntL~~~~~~   30 (281)
T PF00735_consen    5 FNIMVVGESGLGKTTFINTLFNSDII   30 (281)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTSS--
T ss_pred             EEEEEECCCCCCHHHHHHHHHhcccc
Confidence            47999999999999999999997653

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=95.66  E-value=0.016  Score=55.10  Aligned_cols=41  Identities=29%  Similarity=0.391  Sum_probs=33.9

Q ss_pred             EEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141           39 IAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF   80 (376)
Q Consensus        39 ~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~   80 (376)
                      .|.|.|+| |+||||++-.|+-.+ ...+++.++|||+-.|++
T Consensus         3 ~vAV~sGKGGtGKTTva~~la~~l-~~~~~~~l~DcDVe~PNl   44 (284)
T COG1149           3 QVAVASGKGGTGKTTVAANLAVLL-GDKYKLVLADCDVEAPNL   44 (284)
T ss_pred             EEEEeecCCCCChhhHHHHHHHHh-ccccceEEEecCCCCCCc
Confidence            57788887 899999999998765 445679999999998874

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=95.66  E-value=0.018  Score=54.98  Aligned_cols=33  Identities=30%  Similarity=0.310  Sum_probs=28.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017141           35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKK   67 (376)
Q Consensus        35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~   67 (376)
                      ..+-+|-|+|+.++||||+||.|.+-+-+.+..
T Consensus        80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~  112 (283)
T COG1072          80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPES  112 (283)
T ss_pred             CCCEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence            346799999999999999999999988776554

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=95.66  E-value=0.025  Score=55.55  Aligned_cols=60  Identities=15%  Similarity=0.133  Sum_probs=44.0

Q ss_pred             hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEE
Q 017141           19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLS   87 (376)
Q Consensus        19 ~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vS   87 (376)
                      +.+..++..+..      +..|++.|++|+||||+++.|+..+   ++...-++++..-......|.-+
T Consensus        52 ~~~~~vl~~l~~------~~~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~~DliG~~~  111 (327)
T TIGR01650        52 ATTKAICAGFAY------DRRVMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSRIDLVGKDA  111 (327)
T ss_pred             HHHHHHHHHHhc------CCcEEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCChhhcCCCce
Confidence            456666665542      3469999999999999999999987   56777787777655544556543

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.65  E-value=0.011  Score=53.02  Aligned_cols=23  Identities=17%  Similarity=0.303  Sum_probs=21.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLV   58 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~   58 (376)
                      ++.++.|+|+.|+|||||.|.++
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            47899999999999999999885

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=95.65  E-value=0.012  Score=53.94  Aligned_cols=32  Identities=25%  Similarity=0.456  Sum_probs=26.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|-|+|+.||||||++++|...      ...++|+|
T Consensus         5 ~~~igitG~igsGKSt~~~~l~~~------g~~v~d~D   36 (208)
T PRK14731          5 PFLVGVTGGIGSGKSTVCRFLAEM------GCELFEAD   36 (208)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHC------CCeEEecc
Confidence            457889999999999999999863      45678888

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.64  E-value=0.03  Score=54.13  Aligned_cols=55  Identities=18%  Similarity=0.321  Sum_probs=40.9

Q ss_pred             CCCCCCCCCCccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017141            5 MPQTENPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKK   67 (376)
Q Consensus         5 ~~~~~~~~~~~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~   67 (376)
                      +|........+.+|+-..++++     .   +..-|||.||+||||||-...++||+-+...+
T Consensus       101 Ip~~i~~~e~LglP~i~~~~~~-----~---~~GLILVTGpTGSGKSTTlAamId~iN~~~~~  155 (353)
T COG2805         101 IPSKIPTLEELGLPPIVRELAE-----S---PRGLILVTGPTGSGKSTTLAAMIDYINKHKAK  155 (353)
T ss_pred             cCccCCCHHHcCCCHHHHHHHh-----C---CCceEEEeCCCCCcHHHHHHHHHHHHhccCCc
Confidence            4555556667778887776544     1   24589999999999999999999998654433

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.64  E-value=0.007  Score=53.28  Aligned_cols=26  Identities=19%  Similarity=0.344  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|..+.|+|+.|+|||||.|.|+...
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998653

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=95.63  E-value=0.0079  Score=54.93  Aligned_cols=26  Identities=23%  Similarity=0.312  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.++.|+|+.|+|||||.|.|+...
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~   48 (211)
T cd03298          23 QGEITAIVGPSGSGKSTLLNLIAGFE   48 (211)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998765

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=95.63  E-value=0.014  Score=56.78  Aligned_cols=38  Identities=29%  Similarity=0.360  Sum_probs=30.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      .+..|+|.|+.||||||+|+.|++++   +.. .++..|.=+
T Consensus        91 ~p~iIlI~G~sgsGKStlA~~La~~l---~~~-~vi~~D~~r  128 (301)
T PRK04220         91 EPIIILIGGASGVGTSTIAFELASRL---GIR-SVIGTDSIR  128 (301)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh---CCC-EEEechHHH
Confidence            35799999999999999999999988   322 466666544

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.63  E-value=0.02  Score=58.24  Aligned_cols=40  Identities=33%  Similarity=0.329  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-C-CcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-Y-KKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~-~~v~~lDlD~   75 (376)
                      .+.+|+++|++|+||||+++.|+.++... + .++.++-.|.
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~  231 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDS  231 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence            46799999999999999999999976532 2 4566665553

>cd00876 Ras Ras family

Probab=95.63  E-value=0.0086  Score=51.02  Aligned_cols=21  Identities=24%  Similarity=0.436  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +|+|+|++|||||||.+.|.+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~   21 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVK   21 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999988864

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=95.62  E-value=0.0085  Score=56.62  Aligned_cols=35  Identities=31%  Similarity=0.372  Sum_probs=27.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|.++.|+|+.|||||||++.|+..+--...++.+
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~   65 (258)
T PRK11701         31 PGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHY   65 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence            57899999999999999999999865333344444

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.61  E-value=0.0083  Score=54.61  Aligned_cols=35  Identities=23%  Similarity=0.296  Sum_probs=26.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      ++.++.|+|+.|+|||||.+.|+..+--...+|.+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~   60 (204)
T PRK13538         26 AGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW   60 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            47899999999999999999998865333334443

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=95.61  E-value=0.0074  Score=56.23  Aligned_cols=35  Identities=17%  Similarity=0.336  Sum_probs=26.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|.++.|+|+.|||||||+|.|+...--....|.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~   60 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISV   60 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence            47899999999999999999998754323334544

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PLN02165 adenylate isopentenyltransferase

Probab=95.61  E-value=0.013  Score=57.78  Aligned_cols=36  Identities=22%  Similarity=0.336  Sum_probs=28.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      .+..|.|+|++|||||||+..|+..+     ..-++++|--
T Consensus        42 ~g~iivIiGPTGSGKStLA~~LA~~l-----~~eIIsaDs~   77 (334)
T PLN02165         42 KDKVVVIMGATGSGKSRLSVDLATRF-----PSEIINSDKM   77 (334)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHc-----CCceecCChh
Confidence            46789999999999999999988775     1245666633

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=95.61  E-value=0.0097  Score=58.12  Aligned_cols=35  Identities=23%  Similarity=0.375  Sum_probs=29.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .++..|.++|..||||||+++.|+..+   |  .-|+|+|
T Consensus       131 ~~~~~I~l~G~~GsGKStvg~~La~~L---g--~~~id~D  165 (309)
T PRK08154        131 ARRRRIALIGLRGAGKSTLGRMLAARL---G--VPFVELN  165 (309)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHc---C--CCEEeHH
Confidence            357899999999999999999999887   3  3355877

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=95.61  E-value=0.0084  Score=55.76  Aligned_cols=35  Identities=17%  Similarity=0.249  Sum_probs=27.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|.++.|+|+.|+|||||.+.|+...--...++.+
T Consensus        10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~   44 (230)
T TIGR01184        10 QGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVIL   44 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence            47799999999999999999998865333344544

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=95.60  E-value=0.0087  Score=55.86  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=27.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|.++.|+|+.|+|||||.|.|+..+--...++.+
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~   62 (241)
T PRK10895         28 SGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIII   62 (241)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            57899999999999999999999865333334444

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=95.60  E-value=0.0086  Score=56.70  Aligned_cols=35  Identities=17%  Similarity=0.352  Sum_probs=27.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|.++.|+|+.|+|||||.+.|+..+--...++.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~   60 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL   60 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            47899999999999999999999865333345544

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=95.59  E-value=0.01  Score=55.08  Aligned_cols=35  Identities=20%  Similarity=0.172  Sum_probs=26.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|+|||||.+.|+..+--...+|.+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~   60 (236)
T cd03253          26 AGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI   60 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEE
Confidence            47899999999999999999999865322334433

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=95.59  E-value=0.01  Score=54.52  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+.|+|+.|+|||||++.|+...
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~i~G~~   54 (220)
T cd03245          29 AGEKVAIIGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            47899999999999999999998764

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=95.59  E-value=0.011  Score=53.83  Aligned_cols=26  Identities=27%  Similarity=0.266  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.++.|+|+.|+|||||++.|+...
T Consensus        33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~   58 (207)
T cd03369          33 AGEKIGIVGRTGAGKSTLILALFRFL   58 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            47899999999999999999998864

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=95.58  E-value=0.011  Score=50.82  Aligned_cols=22  Identities=27%  Similarity=0.450  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +|+|+|+.++|||||++.|.+.
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~   22 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLING   22 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             CEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999887764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=95.58  E-value=0.01  Score=55.23  Aligned_cols=35  Identities=20%  Similarity=0.326  Sum_probs=27.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|||||||.+.|+..+--...++.+
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~   62 (238)
T cd03249          28 PGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILL   62 (238)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEE
Confidence            47899999999999999999999875333334444

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=95.58  E-value=0.0094  Score=55.73  Aligned_cols=26  Identities=19%  Similarity=0.316  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|..+.|+|+.|+|||||.+.|+..+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (242)
T cd03295          26 KGEFLVLIGPSGSGKTTTMKMINRLI   51 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47799999999999999999998754

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=95.57  E-value=0.019  Score=50.85  Aligned_cols=25  Identities=16%  Similarity=0.280  Sum_probs=21.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +.+++++|+.|+|||||...|....
T Consensus        35 ~k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   35 GKTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4789999999999999988887764

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=95.57  E-value=0.0031  Score=57.44  Aligned_cols=37  Identities=27%  Similarity=0.500  Sum_probs=28.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      ...++|.|+.|+|||||++.+++.+-+.+..+.|++.
T Consensus        20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~   56 (234)
T PF01637_consen   20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDF   56 (234)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCC
T ss_pred             CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEec
Confidence            5689999999999999999999998555545555554

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=95.56  E-value=0.011  Score=50.87  Aligned_cols=22  Identities=18%  Similarity=0.341  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +|+|+|+.|+|||||.+.|++.
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~   23 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQG   23 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7999999999999999988753

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=95.55  E-value=0.02  Score=59.41  Aligned_cols=67  Identities=16%  Similarity=0.209  Sum_probs=44.3

Q ss_pred             CCccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceE
Q 017141           13 PAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFL   86 (376)
Q Consensus        13 ~~~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~v   86 (376)
                      ..+.++++=.+.+..+...    +...|+|+|+.||||||+.+.+++++...+.++..++= |  .|+..||..
T Consensus       222 ~~Lg~~~~~~~~l~~~~~~----~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiED-p--vE~~~~~~~  288 (486)
T TIGR02533       222 ETLGMSPELLSRFERLIRR----PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVED-P--VEYQIEGIG  288 (486)
T ss_pred             HHcCCCHHHHHHHHHHHhc----CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcC-C--eeeecCCCc
Confidence            4455666545555544421    23579999999999999999999988655556666543 3  355556643

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=95.55  E-value=0.01  Score=52.41  Aligned_cols=29  Identities=28%  Similarity=0.478  Sum_probs=24.1

Q ss_pred             EcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           43 CGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        43 ~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      +|+.||||||+++.|++.+     ...++|.|.-
T Consensus         1 ~G~sGsGKSTla~~la~~l-----~~~~~~~d~~   29 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQL-----HAAFLDGDFL   29 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHh-----CCeEEeCccC
Confidence            4999999999999999987     3467788743

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=95.55  E-value=0.011  Score=55.07  Aligned_cols=35  Identities=20%  Similarity=0.356  Sum_probs=27.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|+|||||++.|+..+--...++.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   61 (237)
T cd03252          27 PGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLV   61 (237)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence            47899999999999999999999876333344544

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.54  E-value=0.017  Score=51.59  Aligned_cols=37  Identities=19%  Similarity=0.387  Sum_probs=30.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll-~~~~~v~~lDlD   74 (376)
                      ..+|++||.|+|||.+++.|+.++. ........+|+-
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s   41 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMS   41 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhh
Confidence            4799999999999999999999986 444556666654

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=95.54  E-value=0.0093  Score=55.93  Aligned_cols=26  Identities=31%  Similarity=0.405  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|.++.|+|+.|+|||||.+.|+..+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         28 PGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47799999999999999999998764

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=95.54  E-value=0.0094  Score=53.11  Aligned_cols=26  Identities=23%  Similarity=0.363  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.++.|+|+.|+|||||.+.|+..+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47799999999999999999998654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=95.53  E-value=0.0098  Score=54.16  Aligned_cols=35  Identities=17%  Similarity=0.265  Sum_probs=26.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      ++..+.|+|+.|+|||||.+.|+..+-....++.+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   59 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF   59 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence            47899999999999999999998754323334443

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=95.53  E-value=0.0094  Score=54.60  Aligned_cols=35  Identities=17%  Similarity=0.225  Sum_probs=27.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      ++..+.|+|+.|+|||||.|.|+..+--...++.+
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~   57 (213)
T TIGR01277        23 DGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV   57 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence            47899999999999999999999865333444544

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=95.53  E-value=0.2  Score=47.50  Aligned_cols=43  Identities=12%  Similarity=0.089  Sum_probs=29.4

Q ss_pred             ChhHHHHHHHhhccC-CCCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           18 PREWSDAADSIAYDS-NTSPPPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        18 p~~W~~~~~~i~~~~-~~~~~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      .+.+..+.+..+... ......+|+|+|..|+|||||...|++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~   54 (249)
T cd01853          11 DAAQTKALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGE   54 (249)
T ss_pred             HHHHHHHHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence            345666665443211 1224689999999999999998877764

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=95.52  E-value=0.0099  Score=54.94  Aligned_cols=26  Identities=19%  Similarity=0.199  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|..+.|+|+.|+|||||.+.|+..+
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         35 RGETIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999999999864

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=95.51  E-value=0.0094  Score=56.61  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=26.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA   69 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~   69 (376)
                      +|.++.|+|+.|+|||||.+.|+..+--...++.
T Consensus        37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~   70 (257)
T PRK11247         37 AGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL   70 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence            4789999999999999999999986533333443

>PRK12338 hypothetical protein; Provisional

Probab=95.51  E-value=0.015  Score=56.98  Aligned_cols=25  Identities=32%  Similarity=0.501  Sum_probs=23.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +..|+|+|.+||||||+|+.|+.++
T Consensus         4 p~ii~i~G~sGsGKST~a~~la~~l   28 (319)
T PRK12338          4 PYVILIGSASGIGKSTIASELARTL   28 (319)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHC
Confidence            5689999999999999999999986

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies

Probab=95.51  E-value=0.02  Score=52.01  Aligned_cols=82  Identities=23%  Similarity=0.356  Sum_probs=48.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDV  115 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~  115 (376)
                      +-++|+|.+|||||++.+.++-.++..  ...+-+.=+|+...+|.        .+..    +  ++.         +..
T Consensus        39 ~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k~~~l~--------~~~~----~--~~~---------~~~   95 (205)
T PF01580_consen   39 PHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPKGSDLA--------PLAD----L--PHV---------AAV   95 (205)
T ss_dssp             -SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSCCG--------GGTT-------TTB---------SS-
T ss_pred             ceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCCccccc--------hhhh----h--hhh---------ccc
Confidence            479999999999999999999999873  23344444444443421        1111    1  111         112


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHhhhc
Q 017141          116 SSKRDPTAYLKYITTLYDYYRKEYYMF  142 (376)
Q Consensus       116 sp~~~~~~y~~~v~~L~~~~~~~~~~~  142 (376)
                      ...++++.....+..|.+..++|...+
T Consensus        96 ~~~~~~~~~~~~l~~l~~em~~R~~~l  122 (205)
T PF01580_consen   96 AVATDPEEILRLLEELVEEMERRQALL  122 (205)
T ss_dssp             S-B-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            234577888888888888888876443

The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=95.51  E-value=0.009  Score=56.19  Aligned_cols=26  Identities=31%  Similarity=0.402  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|..+.|+|+.|+|||||++.|+...
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        28 PGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999999864

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=95.51  E-value=0.014  Score=53.36  Aligned_cols=31  Identities=23%  Similarity=0.234  Sum_probs=26.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .|.|+|+.||||||++++|.++      ...++|+|-
T Consensus         3 ~igitG~igsGKst~~~~l~~~------g~~vid~D~   33 (200)
T PRK14734          3 RIGLTGGIGSGKSTVADLLSSE------GFLIVDADQ   33 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHC------CCeEEeCcH
Confidence            6899999999999999999862      346789884

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=95.51  E-value=0.017  Score=56.45  Aligned_cols=39  Identities=26%  Similarity=0.326  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHc------CCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR------YKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~------~~~v~~lDlD   74 (376)
                      .+..+.|+|+.|+|||+||..++-.....      +.+|+|+|++
T Consensus       101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te  145 (317)
T PRK04301        101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTE  145 (317)
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCC
Confidence            36789999999999999999998665432      3489999986

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=95.50  E-value=0.0096  Score=53.91  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.++.|+|+.|+|||||.+.|+...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        25 AGEALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998854

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=95.49  E-value=0.0099  Score=55.19  Aligned_cols=35  Identities=17%  Similarity=0.189  Sum_probs=27.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|.++.|+|+.|+|||||+|.|+-..-....++.+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   58 (232)
T PRK10771         24 RGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTL   58 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence            47899999999999999999998754333445554

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=95.48  E-value=0.012  Score=50.48  Aligned_cols=21  Identities=14%  Similarity=0.276  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +|+|+|+.|+|||||++.|++
T Consensus         2 ki~~vG~~~vGKTsli~~l~~   22 (168)
T cd04119           2 KVISMGNSGVGKSCIIKRYCE   22 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            699999999999999988875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=95.48  E-value=0.013  Score=53.92  Aligned_cols=34  Identities=24%  Similarity=0.100  Sum_probs=26.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA   69 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~   69 (376)
                      ++..+.++|++|+|||||.++|+...--....+.
T Consensus        12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~   45 (213)
T PRK15177         12 YHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFI   45 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEE
Confidence            4679999999999999999999986533333443

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=95.47  E-value=0.014  Score=50.42  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+.|+|+.|+|||||.+.|+...
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            47799999999999999999997753

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK14737 gmk guanylate kinase; Provisional

Probab=95.47  E-value=0.014  Score=52.81  Aligned_cols=25  Identities=24%  Similarity=0.401  Sum_probs=22.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      .+..|+|+||.||||||+++.|++.
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            3678999999999999999999875

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=95.47  E-value=0.011  Score=54.81  Aligned_cols=26  Identities=23%  Similarity=0.409  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|..+.|+|+.|||||||+|.|+...
T Consensus         5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   30 (223)
T TIGR03771         5 KGELLGLLGPNGAGKTTLLRAILGLI   30 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            47799999999999999999999864

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=95.46  E-value=0.013  Score=54.60  Aligned_cols=25  Identities=28%  Similarity=0.417  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +|.++.|+|+.|||||||.|.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        25 KGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4779999999999999999999875

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=95.46  E-value=0.011  Score=53.29  Aligned_cols=40  Identities=30%  Similarity=0.421  Sum_probs=30.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCc
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPG   84 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG   84 (376)
                      .|-|+|+-||||||++++|.++      ...++|+|-=--++.-||
T Consensus         2 iIglTG~igsGKStv~~~l~~~------G~~vidaD~i~~~l~~~~   41 (180)
T PF01121_consen    2 IIGLTGGIGSGKSTVSKILAEL------GFPVIDADEIAHELYEPG   41 (180)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHT------T-EEEEHHHHHHHCTSCT
T ss_pred             EEEEECCCcCCHHHHHHHHHHC------CCCEECccHHHHHHhhcC
Confidence            5789999999999999999872      678899985444443333

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=95.46  E-value=0.011  Score=54.48  Aligned_cols=34  Identities=18%  Similarity=0.270  Sum_probs=26.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA   69 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~   69 (376)
                      +|.++.|+|+.|+|||||.+.|+..+--...++.
T Consensus        33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~   66 (224)
T TIGR02324        33 AGECVALSGPSGAGKSTLLKSLYANYLPDSGRIL   66 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence            4789999999999999999999876432333443

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.45  E-value=0.013  Score=52.95  Aligned_cols=25  Identities=28%  Similarity=0.422  Sum_probs=22.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ++.++.|+|+.|+|||||.+.|+..
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          32 PGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999999864

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13975 thymidylate kinase; Provisional

Probab=95.44  E-value=0.015  Score=52.30  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=22.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ..|.|.|..||||||+++.|+.++
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l   26 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKL   26 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999999987

>cd01878 HflX HflX subfamily

Probab=95.44  E-value=0.017  Score=52.16  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=21.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      -++|.|+|+.|||||||.+.|++.
T Consensus        41 ~~~I~iiG~~g~GKStLl~~l~~~   64 (204)
T cd01878          41 IPTVALVGYTNAGKSTLFNALTGA   64 (204)
T ss_pred             CCeEEEECCCCCCHHHHHHHHhcc
Confidence            479999999999999999888775

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=95.44  E-value=0.012  Score=53.41  Aligned_cols=26  Identities=23%  Similarity=0.355  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|.++.|+|+.|+|||||+|.++...
T Consensus        30 ~G~~~~i~G~nG~GKSTLl~~i~G~~   55 (204)
T cd03250          30 KGELVAIVGPVGSGKSSLLSALLGEL   55 (204)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcC
Confidence            47899999999999999999998854

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK10908 cell division protein FtsE; Provisional

Probab=95.44  E-value=0.014  Score=53.77  Aligned_cols=26  Identities=27%  Similarity=0.571  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.++.|+|+.|+|||||.+.|+...
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         27 PGEMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998654

>cd00879 Sar1 Sar1 subfamily

Probab=95.44  E-value=0.02  Score=50.85  Aligned_cols=35  Identities=23%  Similarity=0.294  Sum_probs=26.2

Q ss_pred             HHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           22 SDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        22 ~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .++++.+..   .....+|+++|+.|||||||.+.|.+
T Consensus         7 ~~~~~~~~~---~~~~~ki~ilG~~~~GKStLi~~l~~   41 (190)
T cd00879           7 YNVLSSLGL---YNKEAKILFLGLDNAGKTTLLHMLKD   41 (190)
T ss_pred             HHHHHHhhc---ccCCCEEEEECCCCCCHHHHHHHHhc
Confidence            445665532   23467899999999999999988765

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=95.43  E-value=0.013  Score=53.37  Aligned_cols=39  Identities=23%  Similarity=0.209  Sum_probs=29.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCc
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPG   84 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG   84 (376)
                      |.|+|+.||||||++++|.+.      ...++|+|.=--++.-||
T Consensus         2 i~itG~~gsGKst~~~~l~~~------g~~~i~~D~i~~~~~~~~   40 (196)
T PRK14732          2 IGITGMIGGGKSTALKILEEL------GAFGISADRLAKRYTEPD   40 (196)
T ss_pred             EEEECCCCccHHHHHHHHHHC------CCEEEecchHHHHHHhcC
Confidence            679999999999999988653      366789886544544444

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=95.43  E-value=0.011  Score=55.71  Aligned_cols=26  Identities=38%  Similarity=0.505  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.++.|+|+.|+|||||.+.|+..+
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~   49 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVL   49 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47799999999999999999998865

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=95.43  E-value=0.01  Score=55.42  Aligned_cols=26  Identities=19%  Similarity=0.238  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|.++.|+|+.|+|||||.+.|+...
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         27 QGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998754

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=95.42  E-value=0.012  Score=50.31  Aligned_cols=22  Identities=23%  Similarity=0.507  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 017141           40 AFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      |.|+|++||||||+++.|+..+
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~   23 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEF   23 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcC
Confidence            6889999999999999998764

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=95.41  E-value=0.013  Score=54.06  Aligned_cols=26  Identities=27%  Similarity=0.432  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|..+.|+|+.|+|||||++.|+..+
T Consensus        39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   64 (226)
T cd03248          39 PGEVTALVGPSGSGKSTVVALLENFY   64 (226)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            47899999999999999999998754

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14526 adenylate kinase; Provisional

Probab=95.41  E-value=0.015  Score=53.72  Aligned_cols=23  Identities=30%  Similarity=0.375  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +++|+|+.||||||+++.|+..+
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~   24 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNEL   24 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998764

>PRK10646 ADP-binding protein; Provisional

Probab=95.40  E-value=0.023  Score=49.86  Aligned_cols=43  Identities=26%  Similarity=0.371  Sum_probs=34.0

Q ss_pred             CChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        17 ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      -+++..++.+.|+.  ...++.+|++.|.=|+|||||+|-++..+
T Consensus        10 s~~~t~~l~~~la~--~l~~g~vi~L~GdLGaGKTtf~rgl~~~L   52 (153)
T PRK10646         10 DEQATLDLGARVAK--ACDGATVIYLYGDLGAGKTTFSRGFLQAL   52 (153)
T ss_pred             CHHHHHHHHHHHHH--hCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            34567777777763  22346789999999999999999999986

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.40  E-value=0.015  Score=54.73  Aligned_cols=27  Identities=26%  Similarity=0.423  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      +|-.|.|+|++|||||||.|.++-..-
T Consensus        28 ~GEfvsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          28 KGEFVAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            477999999999999999999887543

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=95.39  E-value=0.015  Score=53.31  Aligned_cols=46  Identities=26%  Similarity=0.324  Sum_probs=34.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEE
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLT   89 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~   89 (376)
                      ..|-++|..||||||+++++.++      ...++|+|----++.-||.-.+.
T Consensus         3 ~iIglTG~igsGKStva~~~~~~------G~~vidaD~v~r~~~~~~~~~~~   48 (201)
T COG0237           3 LIIGLTGGIGSGKSTVAKILAEL------GFPVIDADDVAREVVEPGGEALQ   48 (201)
T ss_pred             eEEEEecCCCCCHHHHHHHHHHc------CCeEEEccHHHHHHHhccchHHH
Confidence            57899999999999999998883      56788888655555555544433

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=95.39  E-value=0.016  Score=54.83  Aligned_cols=42  Identities=31%  Similarity=0.494  Sum_probs=33.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCce
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGF   85 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~   85 (376)
                      +|-|+|+-||||||++++|.+.+     ...++|+|-=--++--||.
T Consensus         3 iIGlTGgIgSGKStVs~~L~~~~-----G~~viDaD~iar~l~~~~~   44 (244)
T PTZ00451          3 LIGLTGGIACGKSTVSRILREEH-----HIEVIDADLVVRELQAPNM   44 (244)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc-----CCeEEehHHHHHHHHcCCh
Confidence            68899999999999999998853     4567999966555555554

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.38  E-value=0.012  Score=53.85  Aligned_cols=26  Identities=27%  Similarity=0.429  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|.++.|+|+.|+|||||.+.|+...
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         27 AGEALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999999854

>PRK07429 phosphoribulokinase; Provisional

Probab=95.38  E-value=0.019  Score=56.58  Aligned_cols=26  Identities=42%  Similarity=0.747  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+..|-|.|+.|||||||++.|+..+
T Consensus         7 ~~~IIgI~G~SGSGKSTla~~L~~ll   32 (327)
T PRK07429          7 RPVLLGVAGDSGCGKTTFLRGLADLL   32 (327)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHhHh
Confidence            35689999999999999999999776

>PLN02318 phosphoribulokinase/uridine kinase

Probab=95.37  E-value=0.02  Score=60.28  Aligned_cols=25  Identities=24%  Similarity=0.482  Sum_probs=22.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ...|.|+|+.|||||||++.|++.+
T Consensus        65 riIIGIaGpSGSGKTTLAk~LaglL   89 (656)
T PLN02318         65 IILVGVAGPSGAGKTVFTEKVLNFM   89 (656)
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhhC
Confidence            5689999999999999999998864

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=95.37  E-value=0.011  Score=54.22  Aligned_cols=35  Identities=26%  Similarity=0.266  Sum_probs=26.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      ++..+.|+|+.|+|||||.+.|+...--...++.+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   64 (218)
T cd03266          30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATV   64 (218)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence            47799999999999999999998754222334443

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd01866 Rab2 Rab2 subfamily

Probab=95.37  E-value=0.013  Score=51.11  Aligned_cols=22  Identities=18%  Similarity=0.252  Sum_probs=19.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|.+|+|||||+..+++
T Consensus         5 ~ki~vvG~~~vGKSsLl~~l~~   26 (168)
T cd01866           5 FKYIIIGDTGVGKSCLLLQFTD   26 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            4899999999999999998865

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=95.36  E-value=0.025  Score=53.76  Aligned_cols=36  Identities=22%  Similarity=0.264  Sum_probs=32.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      +..+++.|+.|+|||.|+-.++|.+++.|.+|.|+.
T Consensus       105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~  140 (254)
T COG1484         105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT  140 (254)
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence            567999999999999999999999998888888854

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.36  E-value=0.011  Score=56.86  Aligned_cols=35  Identities=20%  Similarity=0.227  Sum_probs=27.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|||||||+|.|+..+--...++.+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~   66 (286)
T PRK13646         32 QGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTV   66 (286)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence            47799999999999999999999865433445555

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=95.35  E-value=0.025  Score=56.15  Aligned_cols=60  Identities=18%  Similarity=0.208  Sum_probs=40.9

Q ss_pred             hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcC---CcEEEEcCCCCCCCCC
Q 017141           20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRY---KKVAYLDTDVGQPEFT   81 (376)
Q Consensus        20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~---~~v~~lDlD~GQ~~~~   81 (376)
                      .|+++...+........-.-|++.|++|+||||++|.+.+++-...   ..++  ++||..|++-
T Consensus        21 Gq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf--~~~p~~p~~~   83 (350)
T CHL00081         21 GQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPF--NSHPSDPELM   83 (350)
T ss_pred             ChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCC--CCCCCChhhh
Confidence            5777766665433222234699999999999999999999987532   1222  3777777643

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=95.34  E-value=0.011  Score=54.80  Aligned_cols=26  Identities=23%  Similarity=0.285  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+.|+|+.|||||||.+.|+...
T Consensus        47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   72 (224)
T cd03220          47 RGERIGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999999754

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.33  E-value=0.013  Score=50.96  Aligned_cols=26  Identities=27%  Similarity=0.484  Sum_probs=22.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+.|+|+.|+|||||.+.|+..+
T Consensus        24 ~g~~~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          24 AGEIVALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            46799999999999999999997643

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.33  E-value=0.013  Score=54.58  Aligned_cols=39  Identities=21%  Similarity=0.161  Sum_probs=28.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .|-.|.|+||.|||||||...+..-.--....+.+-..|
T Consensus        30 ~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d   68 (226)
T COG1136          30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD   68 (226)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEE
Confidence            477999999999999999998876543333444444333

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=95.33  E-value=0.0084  Score=56.97  Aligned_cols=35  Identities=14%  Similarity=0.140  Sum_probs=27.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|.++.|+|+.|+|||||++.|+...--...++.+
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   70 (265)
T PRK10575         36 AGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL   70 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence            57899999999999999999998754223344544

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=95.33  E-value=0.015  Score=50.70  Aligned_cols=22  Identities=14%  Similarity=0.220  Sum_probs=19.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|++|+|||||...+++
T Consensus         4 ~ki~vvG~~~~GKSsl~~~~~~   25 (167)
T cd01867           4 FKLLLIGDSGVGKSCLLLRFSE   25 (167)
T ss_pred             eEEEEECCCCCCHHHHHHHHhh
Confidence            5899999999999999888765

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=95.33  E-value=0.011  Score=55.50  Aligned_cols=34  Identities=18%  Similarity=0.193  Sum_probs=26.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA   69 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~   69 (376)
                      ++.++.|+|+.|+|||||.|.|+..+--....+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~   58 (252)
T TIGR03005        25 AGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ   58 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            4789999999999999999999876432333343

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=95.33  E-value=0.023  Score=54.82  Aligned_cols=29  Identities=21%  Similarity=0.194  Sum_probs=25.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRY   65 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~   65 (376)
                      +..+++.|++|+||||+|+.++..+...+
T Consensus        58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g   86 (284)
T TIGR02880        58 TLHMSFTGNPGTGKTTVALRMAQILHRLG   86 (284)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence            44799999999999999999999987654

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.33  E-value=0.012  Score=56.68  Aligned_cols=35  Identities=11%  Similarity=0.243  Sum_probs=27.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|.++.|+|+.|||||||+|.|+..+--....+.+
T Consensus        36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~   70 (289)
T PRK13645         36 KNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV   70 (289)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence            47799999999999999999999865333344544

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=95.32  E-value=0.015  Score=54.63  Aligned_cols=25  Identities=32%  Similarity=0.620  Sum_probs=22.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +|..+.|+|+.|+|||||.|.|+..
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         31 QNQVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4779999999999999999999875

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=95.32  E-value=0.018  Score=54.54  Aligned_cols=29  Identities=21%  Similarity=0.338  Sum_probs=25.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR   64 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~   64 (376)
                      .|.+++|.|+.|+||||+++.++|.+-..
T Consensus        15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~   43 (249)
T cd01128          15 KGQRGLIVAPPKAGKTTLLQSIANAITKN   43 (249)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence            48899999999999999999999987543

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]

Probab=95.32  E-value=0.027  Score=53.65  Aligned_cols=41  Identities=34%  Similarity=0.476  Sum_probs=35.8

Q ss_pred             EEEEE-cCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           39 IAFIC-GAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        39 ~vlV~-G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      +|+|. |--|+||||++..|+-.|.+.+.+|.++|.|..-|.
T Consensus        49 iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPS   90 (300)
T KOG3022|consen   49 IILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPS   90 (300)
T ss_pred             EEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCC
Confidence            45554 555999999999999999999999999999998876

>cd01863 Rab18 Rab18 subfamily

Probab=95.32  E-value=0.014  Score=50.14  Aligned_cols=21  Identities=14%  Similarity=0.365  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +|+|+|+.|+|||||...|++
T Consensus         2 ki~v~G~~~~GKSsli~~l~~   22 (161)
T cd01863           2 KILLIGDSGVGKSSLLLRFTD   22 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            699999999999999988765

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=95.32  E-value=0.01  Score=57.67  Aligned_cols=40  Identities=23%  Similarity=0.295  Sum_probs=29.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      +|.++.++|+.|+|||||.|.|+..+--...++.+-.-|+
T Consensus        29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~   68 (303)
T TIGR01288        29 RGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPV   68 (303)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence            4789999999999999999999986533334555433333

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=95.31  E-value=0.2  Score=49.97  Aligned_cols=56  Identities=21%  Similarity=0.289  Sum_probs=37.9

Q ss_pred             CCCCCCCCCccCChhHHHHH------HHhh---ccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141            6 PQTENPSPAIYIPREWSDAA------DSIA---YDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus         6 ~~~~~~~~~~~ip~~W~~~~------~~i~---~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      ++.++...+..-|.++.+++      +.+.   ..+  .-+.-+++.|++|+||+|+++.+++.++.
T Consensus         7 ~~~~~~~~~~~~P~~~~~l~Gh~~a~~~L~~a~~~g--rl~ha~L~~G~~G~GKttlA~~lA~~Llc   71 (351)
T PRK09112          7 PEQHDDLDGVPSPSENTRLFGHEEAEAFLAQAYREG--KLHHALLFEGPEGIGKATLAFHLANHILS   71 (351)
T ss_pred             ccccccccCCCCCCchhhccCcHHHHHHHHHHHHcC--CCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence            44455555666777776432      2222   112  12446999999999999999999999875

>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=95.31  E-value=0.028  Score=55.21  Aligned_cols=42  Identities=31%  Similarity=0.339  Sum_probs=37.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ..++++|--|+||||.+--++=++.+.|+++.++-.||.++-
T Consensus         3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL   44 (322)
T COG0003           3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSL   44 (322)
T ss_pred             EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCch
Confidence            356777777999999999999999999999999999998764

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.30  E-value=0.011  Score=58.02  Aligned_cols=42  Identities=26%  Similarity=0.468  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      +|..+.|+|+.|||||||.+.|+..+--...+|.+-+-|+++
T Consensus        51 ~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~   92 (320)
T PRK13631         51 KNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGD   92 (320)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccc
Confidence            478999999999999999999998654444566665444443

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.30  E-value=0.012  Score=55.17  Aligned_cols=41  Identities=20%  Similarity=0.214  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      ++..++|+|++|||||||.+.|.--+......|.+=+.|..
T Consensus        29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~   69 (235)
T COG1122          29 KGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTS   69 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeecc
Confidence            47799999999999999999888776666666655444444

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=95.30  E-value=0.027  Score=50.11  Aligned_cols=52  Identities=12%  Similarity=0.137  Sum_probs=33.5

Q ss_pred             hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      ...++++.+..-..  .+..|||.|+.|+||+.+||.+-++-.++...-..|||
T Consensus         7 ~m~~~~~~~~~~a~--~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc   58 (168)
T PF00158_consen    7 AMKRLREQAKRAAS--SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNC   58 (168)
T ss_dssp             HHHHHHHHHHHHTT--STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEET
T ss_pred             HHHHHHHHHHHHhC--CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEeh
Confidence            34455554443221  13579999999999999999999966555444444555

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=95.30  E-value=0.015  Score=60.07  Aligned_cols=37  Identities=27%  Similarity=0.255  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCc
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPG   84 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG   84 (376)
                      +|.+|.|+|++||||||+...|+..            .||.|++++.-|
T Consensus       363 ~GEkvAIlG~SGsGKSTllqLl~~~------------~~~~~G~i~~~g  399 (573)
T COG4987         363 QGEKVAILGRSGSGKSTLLQLLAGA------------WDPQQGSITLNG  399 (573)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHhc------------cCCCCCeeeECC
Confidence            5889999999999999999988864            378888877766

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=95.29  E-value=0.012  Score=55.90  Aligned_cols=26  Identities=27%  Similarity=0.461  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|..+.|+|+.|+|||||.+.|+..+
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T TIGR02769        36 EGETVGLLGRSGCGKSTLARLLLGLE   61 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999999864

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.29  E-value=0.012  Score=56.08  Aligned_cols=35  Identities=23%  Similarity=0.299  Sum_probs=27.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|.++.|+|+.|+|||||.+.|+..+--...++.+
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~   68 (271)
T PRK13632         34 EGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKI   68 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence            47899999999999999999998865333334444

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=95.29  E-value=0.017  Score=54.23  Aligned_cols=26  Identities=19%  Similarity=0.272  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .|-+|=|+|.+|||||||.|.|+.-.
T Consensus        52 ~Ge~vGiiG~NGaGKSTLlkliaGi~   77 (249)
T COG1134          52 KGERVGIIGHNGAGKSTLLKLIAGIY   77 (249)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCcc
Confidence            47899999999999999999998754

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=95.29  E-value=0.021  Score=58.58  Aligned_cols=37  Identities=30%  Similarity=0.486  Sum_probs=32.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~lDlD   74 (376)
                      ..+++.|+.|+|||+|++.++|.+.+.  +.+|.|++++
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~  187 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE  187 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence            458999999999999999999999887  5678888764

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=95.28  E-value=0.011  Score=55.56  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=27.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|+|||||.+.|+...--....+.+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   64 (255)
T PRK11300         30 EQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILL   64 (255)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEE
Confidence            47899999999999999999999864323334443

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=95.28  E-value=0.015  Score=50.45  Aligned_cols=22  Identities=14%  Similarity=0.256  Sum_probs=19.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|++|+|||||...|++
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~   24 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFAD   24 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999877764

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	376
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	5e-47
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	8e-04

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} Length = 460

 Score =  165 bits (418), Expect = 5e-47
 Identities = 55/334 (16%), Positives = 107/334 (32%), Gaps = 31/334 (9%)

Query: 32  SNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ-RYKKVAYLDTDVGQPEFTAPGFLSLTV 90
            +    P   I G    GKT+ SR L +  L+    +  Y++ D  QP FT PG +S T 
Sbjct: 133 MSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATP 192

Query: 91  VDTLTPDLTIPCLKTPK-----------RCYFFGDVSSKRDPTAYLKYITTLYDYYRKEY 139
           +  +         ++                 FG      +   YL+ I+ L     +  
Sbjct: 193 ISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRL 252

Query: 140 YMFNESESPGRTELPLIVNTPGWVK-GIGYDILVDMLKYITPTHVVKINISFEKKNLPAG 198
           +       P       IV+TP   +       L  +++ +    ++   +  E   L   
Sbjct: 253 H-----LDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLV--LCSETDPLWEK 305

Query: 199 AFWLDNFEGVDVNLIEI-SSARQDSFNRSVLVQKDARLLRDLRIMAYFRQCFPSDLN-IT 256
                  E  + N+  I       + +         R L+   I  YF     + L+   
Sbjct: 306 VKKTFGPELGNNNIFFIPKLDGVSAVDDVYK-----RSLQRTSIREYFYGSLDTALSPYA 360

Query: 257 IIKELAQALAAYPPYQVPISSIKIRHLYCQVPRSEIFYSLNATIVGLAISSDASENLPH- 315
           I  +        P         ++      +  S + +++ A  +  A        +   
Sbjct: 361 IGVDYEDLTIWKPSNVFDNEVGRVELFPVTITPSNLQHAIIA--ITFAERRADQATVIKS 418

Query: 316 -CVGLGIVRGIDTLKGLLYVITPVPPGILEKVDL 348
             +G  ++  ++  +  L V+ PVP  +  K  +
Sbjct: 419 PILGFALITEVNEKRRKLRVLLPVPGRLPSKAMI 452

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 2e-10
 Identities = 66/393 (16%), Positives = 124/393 (31%), Gaps = 129/393 (32%)

Query: 1   MAAYMPQTENPSP--AIYIP---REWSDAADSIAYD--------------SNTSPPPIAF 41
           M+    +   PS    +YI    R ++D      Y+                  P     
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 42  ICGAKNCGKTTFSRHLVNVLLQRYK-------KVAYLDTDVGQ---PEFTAPGFLSLTVV 91
           I G    GKT     +   +   YK       K+ +L  ++     PE        L   
Sbjct: 155 IDGVLGSGKTW----VALDVCLSYKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLY- 207

Query: 92  DTLTPDLTIPC------------LKTPKRCYFFG-----------DVSSKRDPTAY---- 124
             + P+ T               ++   R                +V + +   A+    
Sbjct: 208 -QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 125 --LKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYIT--- 179
             L  +TT      +   + +   +   T + L  ++          +L   LKY+    
Sbjct: 267 KIL--LTT------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL---LKYLDCRP 315

Query: 180 ---PTHVVKIN------ISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQ 230
              P  V+  N      I+   ++    A W DN++   VN  ++++  + S N  VL  
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGL--ATW-DNWK--HVNCDKLTTIIESSLN--VLEP 368

Query: 231 KDARLLRDLRIMAYFRQC--FPSDLNIT------------------IIKELAQ-ALAAYP 269
            + R          F +   FP   +I                   ++ +L + +L    
Sbjct: 369 AEYR--------KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 270 PYQVPISSIKIRHLYCQV-PRSEIFYSLNATIV 301
           P +   S+I I  +Y ++  + E  Y+L+ +IV
Sbjct: 421 PKE---STISIPSIYLELKVKLENEYALHRSIV 450

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} Length = 171

 Score = 38.9 bits (90), Expect = 8e-04
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV-GQPEFTAPG 84
            I  I G  + GKTT    ++ +L +R  +VA +     G  E    G
Sbjct: 2  SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEG 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	376
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.83
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	98.23
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.22
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	98.16
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.1
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	98.06
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.06
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	97.85
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	97.78
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	97.71
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	97.7
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.7
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	97.68
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.67
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	97.66
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.63
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	97.62
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	97.61
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.6
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.6
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.59
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.58
3end_A	307	Light-independent protochlorophyllide reductase ir	97.57
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.57
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.54
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	97.54
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.54
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.51
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	97.51
2xxa_A	433	Signal recognition particle protein; protein trans	97.49
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.48
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.47
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.45
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.45
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.45
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.43
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	97.43
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.42
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.42
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	97.41
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.4
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	97.4
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.4
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.4
3bos_A	242	Putative DNA replication factor; P-loop containing	97.36
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	97.35
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.35
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.35
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.34
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.33
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.32
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.32
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.31
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.31
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.28
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.27
2og2_A	359	Putative signal recognition particle receptor; nuc	97.27
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.26
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.25
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.24
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.23
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.23
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.23
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.23
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.22
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.22
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.21
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.2
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	97.2
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.19
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	97.16
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.15
3fwy_A	314	Light-independent protochlorophyllide reductase I	97.14
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.14
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.13
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.13
1via_A	175	Shikimate kinase; structural genomics, transferase	97.13
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.13
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.12
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.11
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.11
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	97.1
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	97.1
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.09
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.08
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.07
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	97.07
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.06
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.05
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.05
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.05
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.05
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	97.04
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.04
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.04
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.03
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.02
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.02
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.01
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.01
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.0
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.0
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.98
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.97
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.97
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.97
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.95
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.94
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.92
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.92
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.92
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.9
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.9
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.9
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.9
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.89
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.89
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.89
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.87
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.86
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.86
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.85
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.85
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.84
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.83
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.83
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.81
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.81
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	96.8
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.78
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.77
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.77
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.76
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.76
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.75
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.73
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.73
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.7
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.7
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.68
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.68
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.68
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.68
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.67
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.66
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.66
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.66
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.65
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.64
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.64
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.63
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	96.63
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.62
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.62
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	96.61
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.6
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.6
2qgz_A	308	Helicase loader, putative primosome component; str	96.59
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.59
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.58
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.57
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.56
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.52
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.52
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.52
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	96.52
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.51
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.51
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	96.51
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.51
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.5
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.49
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.48
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.47
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.47
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	96.47
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.47
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.46
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.46
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.45
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.44
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.42
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.4
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.4
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.4
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.4
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.37
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.37
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.36
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.35
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.34
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.34
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.33
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.33
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.32
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.31
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.3
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.29
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.28
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.24
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.23
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.23
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.22
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.22
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.22
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.21
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.2
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.2
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.17
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.15
3io5_A	333	Recombination and repair protein; storage dimer, i	96.14
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.13
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.12
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.11
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.11
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.11
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.08
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.07
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.05
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.01
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.0
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.98
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.97
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.95
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.95
3co5_A	143	Putative two-component system transcriptional RES	95.94
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	95.93
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	95.93
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.93
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.91
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	95.88
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.88
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	95.86
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.85
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.84
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.82
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.81
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.8
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.8
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.79
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	95.78
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.78
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.77
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.77
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.76
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.75
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.75
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.73
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.73
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.72
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	95.7
2chq_A	319	Replication factor C small subunit; DNA-binding pr	95.7
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	95.68
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.68
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	95.66
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.65
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.64
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.62
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.61
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.6
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	95.6
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.59
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.58
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.57
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.56
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.56
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.55
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.55
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.55
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.54
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.52
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.52
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.52
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	95.51
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.51
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.51
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.51
1g6h_A	257	High-affinity branched-chain amino acid transport	95.51
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.5
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.5
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.5
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.49
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.49
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	95.49
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.48
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.48
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.46
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.46
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.46
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.46
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.45
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.44
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.44
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.43
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	95.43
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.43
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	95.42
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.42
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.41
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.41
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.4
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.4
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.4
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.39
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	95.39
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.38
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.37
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.37
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.34
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.32
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.3
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.3
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.29
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.29
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	95.27
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.27
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.27
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.26
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.25
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.25
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.24
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.22
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	95.21
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.21
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.2
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	95.2
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.19
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.19
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.17
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.17
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.16
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	95.16
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.16
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.15
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.14
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.14
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.14
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.14
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.13
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.13
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.12
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	95.11
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.11
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.11
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.1
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.1
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.09
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.08
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.08
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.04
2fna_A	357	Conserved hypothetical protein; structural genomic	95.03
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.03
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.02
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.02
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.0
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	95.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.99
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	94.99
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.98
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	94.98
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	94.97
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	94.96
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	94.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	94.96
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	94.96
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	94.96
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	94.93
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	94.93
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	94.92
2wji_A	165	Ferrous iron transport protein B homolog; membrane	94.89
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	94.89
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	94.88
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	94.88
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	94.88
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	94.86
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	94.85
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	94.85
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	94.83
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	94.82
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	94.82
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.82
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	94.82
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	94.8
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	94.8
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	94.8
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	94.79
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	94.75
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	94.74
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	94.74
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	94.73
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	94.73
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.72
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	94.72
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	94.71
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	94.7
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	94.69
3llu_A	196	RAS-related GTP-binding protein C; structural geno	94.67
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	94.66
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	94.66
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	94.66
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	94.66
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	94.65
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	94.65
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.64
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	94.61
3igf_A	374	ALL4481 protein; two-domained protein consisting o	94.61
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	94.59
2fh5_B	214	SR-beta, signal recognition particle receptor beta	94.58
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	94.58
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	94.58
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	94.58
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	94.58
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	94.57
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	94.57
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	94.57
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	94.55
2r44_A	331	Uncharacterized protein; putative ATPase, structur	94.55
1tue_A	212	Replication protein E1; helicase, replication, E1E	94.55
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	94.54
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	94.54
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.54
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	94.53
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	94.52
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	94.52
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	94.5
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	94.49
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	94.49
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	94.47
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	94.46
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	94.45
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	94.42
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	94.41
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	94.4
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	94.38
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	94.37
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	94.37
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	94.37
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	94.36
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	94.35
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	94.34
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	94.34
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	94.32
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	94.32
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	94.27
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	94.27
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	94.25
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	94.21
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	94.18
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	94.16
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	94.13
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	94.13
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	94.12
3ice_A	422	Transcription termination factor RHO; transcriptio	94.1
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	94.09
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	94.07
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	94.07
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	94.07
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	94.05
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.04
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	94.04
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	94.01
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	93.99
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	93.98
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	93.97
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	93.94
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	93.93
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	93.89
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	93.86
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	93.86
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	93.85
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.85
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	93.85
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	93.84
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	93.84
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	93.81
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	93.75
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	93.75
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	93.7
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	93.7
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	93.69
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	93.68
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	93.66
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	93.62
3qxc_A	242	Dethiobiotin synthetase; DTBS, structural genomics	93.61
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	93.56
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	93.54
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	93.45
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	93.4
3pvs_A	447	Replication-associated recombination protein A; ma	93.39
3kta_A	182	Chromosome segregation protein SMC; structural mai	93.34
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	93.33
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	93.32
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	93.29
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	93.29
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.26
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	93.22
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	93.21
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	93.19

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.83  E-value=3e-19  Score=181.14  Aligned_cols=288  Identities=19%  Similarity=0.229  Sum_probs=193.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCC-cEEEEcCCCCCCCCCCCceEEEEecccCCC----CCCCCC-------C
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYK-KVAYLDTDVGQPEFTAPGFLSLTVVDTLTP----DLTIPC-------L  103 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~-~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~----~~~~~~-------~  103 (376)
                      .|.+++|+|++|||||||+|+|++++...+. +++++|.|+++.....|+.+++..+.....    .+....       -
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~  216 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLH  216 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhhcccccccCcchHH
Confidence            4889999999999999999999999887777 778899999999999999998865433211    011000       0


Q ss_pred             CCCceeEEcCCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccc-cccHHHHHHHHHHhCCCE
Q 017141          104 KTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVK-GIGYDILVDMLKYITPTH  182 (376)
Q Consensus       104 ~~p~~~~f~G~~sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~-g~G~~ll~~~i~~~~p~~  182 (376)
                      ..-...+++|..+..+...++-...++++-...+|+..     ++..+.+++|+|.|.|.. +...+++.++++.++.+.
T Consensus       217 ~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~-----~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~tv  291 (460)
T 2npi_A          217 NKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHL-----DPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNI  291 (460)
T ss_dssp             CBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHH-----CHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhcc-----CcccCcceEEEeCCcccccChhHHHHHHHHHHhCCCE
Confidence            01124678898877666678877777777655544432     233456789999976653 233788999999999998


Q ss_pred             EEEEecCc------ccccCCCCcccccCCCCcceEEEEecCCCCCCCcccccchHHHHHHHHHHHHHHhhhcCCCCCchh
Q 017141          183 VVKINISF------EKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQCFPSDLNIT  256 (376)
Q Consensus       183 Vv~l~~~~------~~~~l~~~~~~~~~~~~~~v~vv~l~~~~~~~~~rs~~~~~~~~~~R~~~~~~YF~~~~~~~~~~~  256 (376)
                      |++..+..      +...+.      +.  ...++++.+++.++.. ..+   +.+.+..|..++++||++.....+   
T Consensus       292 iiVth~~~~~l~~~~~~~~~------dr--~~~~~vi~l~k~G~iv-~g~---~~~~~~~~~~~i~~~f~g~~~~~l---  356 (460)
T 2npi_A          292 MLVLCSETDPLWEKVKKTFG------PE--LGNNNIFFIPKLDGVS-AVD---DVYKRSLQRTSIREYFYGSLDTAL---  356 (460)
T ss_dssp             EEEECCSSCTHHHHHHHHHH------HH--HCGGGEEEECCCTTCC-CCC---HHHHHHHHHHHHHHHHHCCTTTCB---
T ss_pred             EEEEccCchhhhHHHHHHhc------cc--ccCCEEEEEeCCCcEE-ECC---HHHHhhhhHHHHHHHhCCCCCCCc---
Confidence            88877643      111110      00  0011356677555433 322   233444567889999988542221   


Q ss_pred             hhHHhhhhhcCCCCeeeecCceEEEEeecC----------CCchhHHHHhhccEEEEEEcCCCC--C--CCCceEEEEEE
Q 017141          257 IIKELAQALAAYPPYQVPISSIKIRHLYCQ----------VPRSEIFYSLNATIVGLAISSDAS--E--NLPHCVGLGIV  322 (376)
Q Consensus       257 ~~~~~~~~L~~~~P~~v~~~~l~i~~~~~~----------v~~~~i~~~lngslVaL~~~~~~~--~--~~~~~lGlgiV  322 (376)
                                .....+++|+++.++.+...          .|.......|.++|+|++..+...  +  ....++||..|
T Consensus       357 ----------~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ilav~~~~~~~~~~~v~~~~v~Gf~~v  426 (460)
T 2npi_A          357 ----------SPYAIGVDYEDLTIWKPSNVFDNEVGRVELFPVTITPSNLQHAIIAITFAERRADQATVIKSPILGFALI  426 (460)
T ss_dssp             ----------CCEEEEEESTTCCEEEECCSTTTSSCCSCEEECCCCHHHHTTEEEEEESSCTTCCHHHHTTSCEEEEEEE
T ss_pred             ----------CCccEEEecCCeEEEEecCCCCCCCCceeeecCCCCChhhhCcEEEEEecCcCCCccccccccCccEEEE
Confidence                      11235688888888776531          111233456788999998774321  1  13479999999


Q ss_pred             eeeecCCCEEEEEcCCCCCCCCcccEEEecccc
Q 017141          323 RGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQ  355 (376)
Q Consensus       323 r~ID~~~~~i~iltP~~~~~l~~v~~Lv~G~i~  355 (376)
                      ..||.+++++++|+|.+++++++  .|+.|+++
T Consensus       427 ~~Vd~~~~~~~vl~p~~~~lp~~--~l~~~~~~  457 (460)
T 2npi_A          427 TEVNEKRRKLRVLLPVPGRLPSK--AMILTSYR  457 (460)
T ss_dssp             EEEETTTTEEEEEESSSSCCCCS--CEEEEEEE
T ss_pred             EEEEcCCCEEEEEcCCCCCCCCC--ceeeeeeE
Confidence            99999999999999999999987  47788765

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=98.23  E-value=1.4e-05  Score=74.93  Aligned_cols=44  Identities=23%  Similarity=0.263  Sum_probs=40.0

Q ss_pred             CCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           36 PPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        36 ~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ...+|+|+|++ |+||||++..|+..+.+.|.+|++||+|+..+.
T Consensus        81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~  125 (271)
T 3bfv_A           81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPT  125 (271)
T ss_dssp             CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCC
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCcc
Confidence            46789999886 899999999999999999999999999998764

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.22  E-value=3.8e-06  Score=84.38  Aligned_cols=121  Identities=23%  Similarity=0.294  Sum_probs=73.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVS  116 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~s  116 (376)
                      +.+|+++|+.|+||||++..|+.++.++|++|+++++|+..+.     .     ++.... +. ....-|   .+ ...+
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~a-----a-----~eqL~~-~~-~~~gvp---v~-~~~~  163 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPG-----A-----YHQLRQ-LL-DRYHIE---VF-GNPQ  163 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTH-----H-----HHHHHH-HH-GGGTCE---EE-CCTT
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchh-----H-----HHHHHH-HH-HhcCCc---EE-ecCC
Confidence            6799999999999999999999999999999999999986542     1     111000 00 000111   12 2111


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccccc--cHHHHHHHHHHhCCCEEEEEecC
Q 017141          117 SKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGI--GYDILVDMLKYITPTHVVKINIS  189 (376)
Q Consensus       117 p~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~--G~~ll~~~i~~~~p~~Vv~l~~~  189 (376)
                       ..+|....   .+.++..+.+            ...-+||||+|.....  -..-+..+.+..+|+.++.+-+.
T Consensus       164 -~~dp~~i~---~~al~~a~~~------------~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA  222 (443)
T 3dm5_A          164 -EKDAIKLA---KEGVDYFKSK------------GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDG  222 (443)
T ss_dssp             -CCCHHHHH---HHHHHHHHHT------------TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred             -CCCHHHHH---HHHHHHHHhC------------CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeC
Confidence             13443222   2222222221            2346899999975432  12345567778899987776653

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=98.16  E-value=1.5e-05  Score=75.43  Aligned_cols=45  Identities=22%  Similarity=0.328  Sum_probs=40.7

Q ss_pred             CCCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           35 SPPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        35 ~~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ..+.+|+|+|++ |+||||++..|+..+.+.|.+|++||+|+..+.
T Consensus        90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~  135 (286)
T 3la6_A           90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGY  135 (286)
T ss_dssp             TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCC
T ss_pred             CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCC
Confidence            346789999987 899999999999999999999999999998764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.10  E-value=3.7e-06  Score=84.27  Aligned_cols=41  Identities=32%  Similarity=0.369  Sum_probs=38.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      ++.+|+++|+.||||||++..|+.++...|++|.++++|+.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~  136 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY  136 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence            36789999999999999999999999999999999999974

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=98.06  E-value=1.4e-05  Score=73.71  Aligned_cols=42  Identities=26%  Similarity=0.298  Sum_probs=37.6

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .+|.|++.| |+||||++..|+..+.+.|++|+++|+|+.|+.
T Consensus         3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~   45 (263)
T 1hyq_A            3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMAN   45 (263)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSS
T ss_pred             eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCC
Confidence            467787766 799999999999999999999999999998775

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.06  E-value=2.9e-05  Score=79.22  Aligned_cols=41  Identities=20%  Similarity=0.212  Sum_probs=37.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      +.+|+|+|..|+||||++..|+.++.+.|.+|+++|+|+..
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r  141 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR  141 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence            56899999999999999999999999989999999999854

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=97.85  E-value=1.8e-05  Score=72.63  Aligned_cols=42  Identities=31%  Similarity=0.359  Sum_probs=38.7

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ++|.|+|.| |+||||++..|+..+.++|++|+++|+|++|+.
T Consensus         3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~   45 (260)
T 3q9l_A            3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRN   45 (260)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCC
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCC
Confidence            578888887 699999999999999999999999999998876

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=97.78  E-value=2e-05  Score=71.34  Aligned_cols=42  Identities=33%  Similarity=0.347  Sum_probs=38.3

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ++|.|+|.| |+||||++..|+..+.++|++|+++|+|+.|+.
T Consensus         3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~   45 (237)
T 1g3q_A            3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMAN   45 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCC
T ss_pred             eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCC
Confidence            478888877 899999999999999999999999999998775

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=97.71  E-value=6.2e-05  Score=71.57  Aligned_cols=44  Identities=34%  Similarity=0.457  Sum_probs=40.5

Q ss_pred             CCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           36 PPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        36 ~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .+.+|+|+|.+ |+||||++..|+..+.+.|.+|++||+|+.++.
T Consensus       103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~  147 (299)
T 3cio_A          103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGY  147 (299)
T ss_dssp             SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCC
T ss_pred             CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCcc
Confidence            46789999986 899999999999999999999999999998876

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=97.70  E-value=3.1e-05  Score=70.35  Aligned_cols=43  Identities=16%  Similarity=0.098  Sum_probs=38.9

Q ss_pred             CCEEEEEcCC-CCcHHHHHHHHHHHHHHc-CCcEEEEcCCCCCCC
Q 017141           37 PPIAFICGAK-NCGKTTFSRHLVNVLLQR-YKKVAYLDTDVGQPE   79 (376)
Q Consensus        37 ~~~vlV~G~~-~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~GQ~~   79 (376)
                      +.+|.|++.| |+||||++..|+..+.+. |++|+++|+|+.++.
T Consensus         4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~   48 (245)
T 3ea0_A            4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGD   48 (245)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCC
T ss_pred             CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCC
Confidence            5688899887 799999999999999998 999999999998655

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.70  E-value=4.4e-05  Score=66.84  Aligned_cols=43  Identities=21%  Similarity=0.180  Sum_probs=36.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .+++.|+|++||||||++..|+.++-++|.+|.++..|++..+
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~~d   46 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGE   46 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCCcc
Confidence            4689999999999999999999999889999999999987543

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=97.68  E-value=3.8e-05  Score=72.24  Aligned_cols=43  Identities=35%  Similarity=0.423  Sum_probs=38.5

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF   80 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~   80 (376)
                      ++|.|++.| |+||||++..|+..|.+.|++|+++|+|++|+.+
T Consensus         5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l   48 (286)
T 2xj4_A            5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTS   48 (286)
T ss_dssp             EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHH
T ss_pred             eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCH
Confidence            468888777 8999999999999999999999999999988653

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.67  E-value=4.7e-05  Score=69.89  Aligned_cols=43  Identities=33%  Similarity=0.449  Sum_probs=39.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF   80 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~   80 (376)
                      ...+++.|..|+||||++..|+.++. .+++|+++|+|++.+..
T Consensus        14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~   56 (262)
T 1yrb_A           14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKEL   56 (262)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCC
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCcccc
Confidence            56889999999999999999999998 99999999999998764

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=97.66  E-value=2.4e-05  Score=72.47  Aligned_cols=42  Identities=31%  Similarity=0.392  Sum_probs=37.0

Q ss_pred             CCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           36 PPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        36 ~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      .+++|.|.++| |+||||++..|+..+. +|++|+++|+|+..+
T Consensus        26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~   68 (267)
T 3k9g_A           26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQAS   68 (267)
T ss_dssp             CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCH
T ss_pred             CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCC
Confidence            46788888888 7999999999999998 999999999999653

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.63  E-value=5.8e-05  Score=71.80  Aligned_cols=41  Identities=27%  Similarity=0.391  Sum_probs=37.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHH-cCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ-RYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~-~~~~v~~lDlD~G   76 (376)
                      .+.+++++|+.|+||||+++.|+.++.. +|++|.++|+|+.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~  145 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY  145 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence            4679999999999999999999999885 7889999999984

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=97.62  E-value=7.9e-05  Score=68.99  Aligned_cols=43  Identities=28%  Similarity=0.294  Sum_probs=39.2

Q ss_pred             CCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           37 PPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        37 ~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      +.+|.|++.| |+||||++..|+..+.+.|++|+++|+|+..+.
T Consensus        18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~   61 (262)
T 2ph1_A           18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPS   61 (262)
T ss_dssp             SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCH
T ss_pred             CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence            5688999888 699999999999999999999999999998864

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=97.61  E-value=4.7e-05  Score=70.26  Aligned_cols=41  Identities=29%  Similarity=0.242  Sum_probs=37.3

Q ss_pred             CCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           37 PPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        37 ~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      .++|.|++.| |+||||++..|+..+.+.|++|+++|+|+ |+
T Consensus         6 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~-~~   47 (257)
T 1wcv_1            6 VRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDP-QG   47 (257)
T ss_dssp             CCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT-TC
T ss_pred             CEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCC-Cc
Confidence            5688898877 89999999999999999999999999999 44

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.60  E-value=5.6e-05  Score=72.32  Aligned_cols=42  Identities=26%  Similarity=0.414  Sum_probs=38.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      .+..|+|+|+.|+||||+++.|+.++...+.+|.++|+|+-.
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r  144 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR  144 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence            356899999999999999999999998889999999999754

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.60  E-value=6.5e-05  Score=72.31  Aligned_cols=42  Identities=24%  Similarity=0.176  Sum_probs=38.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      ++.+|+|+|+.|+||||+++.|+.++...+++|.++|+|+..
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r  145 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR  145 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            466899999999999999999999999999999999999854

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.59  E-value=5e-05  Score=66.32  Aligned_cols=39  Identities=28%  Similarity=0.433  Sum_probs=35.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+..|+++|..||||||+++.|+.++-..+.++.++|.|
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d   50 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD   50 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence            467899999999999999999999998888889999876

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.58  E-value=5.2e-05  Score=66.81  Aligned_cols=40  Identities=25%  Similarity=0.242  Sum_probs=35.4

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      ++|.|++.| |+||||++..|+..+.++|++|+++|+|+..
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~   42 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQM   42 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence            367888777 6999999999999999999999999999653

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.57  E-value=5.9e-05  Score=73.38  Aligned_cols=44  Identities=27%  Similarity=0.240  Sum_probs=37.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ..++|.|+|..|+|||||+..|+..+...|.+|+++|+||+.+.
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~  121 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTR  121 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCc
Confidence            46799999999999999999999999999999999999998763

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.54  E-value=9.2e-05  Score=64.98  Aligned_cols=48  Identities=21%  Similarity=0.307  Sum_probs=36.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCc
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPG   84 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG   84 (376)
                      .+.+.|+|++|||||||++.|+..+...+.+|..+..|++.-++..||
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~~id~~g   53 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPG   53 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--------
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCccccCCCC
Confidence            468999999999999999999999888889999999988765554444

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=97.54  E-value=3.4e-05  Score=69.92  Aligned_cols=40  Identities=25%  Similarity=0.391  Sum_probs=36.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      +|.|.|.-|+||||++..|+..+.+.|++|+++|+|+ |+.
T Consensus         2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~-~~~   41 (254)
T 3kjh_A            2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP-DSC   41 (254)
T ss_dssp             EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT-TSC
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC-CcC
Confidence            5778898899999999999999999999999999999 454

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.54  E-value=5.9e-05  Score=75.56  Aligned_cols=43  Identities=26%  Similarity=0.380  Sum_probs=39.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      +.+|+|+|+.|+||||++..|+.++.++|++|+++|+|+..+.
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~  141 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPA  141 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCch
Confidence            4589999999999999999999999999999999999996543

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.51  E-value=7.3e-05  Score=66.29  Aligned_cols=39  Identities=28%  Similarity=0.370  Sum_probs=33.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ++..|.|+|+.||||||+++.|+..+-..|..++++|.|
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d   62 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD   62 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence            478999999999999999999999987667767788865

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=97.51  E-value=6.9e-05  Score=71.96  Aligned_cols=41  Identities=27%  Similarity=0.232  Sum_probs=35.4

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ++|+|+++| |+||||++..|+-.+.+.|++|.++|+|+ |+.
T Consensus        14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~   55 (324)
T 3zq6_A           14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP-AHS   55 (324)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS-SCC
T ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC-CcC
Confidence            456666555 99999999999999999999999999999 654

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.49  E-value=0.00011  Score=73.57  Aligned_cols=42  Identities=33%  Similarity=0.507  Sum_probs=38.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDVGQP   78 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~GQ~   78 (376)
                      +.+|+|+|..|+||||++..|+.++.++ |++|+++|+|+..+
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~  142 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRP  142 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            5689999999999999999999999998 99999999999754

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.48  E-value=0.00018  Score=63.89  Aligned_cols=41  Identities=24%  Similarity=0.211  Sum_probs=35.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      .+..|.|+|+.||||||+++.|+..+-..+..+.+++.|.-
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~   61 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH   61 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence            46789999999999999999999988777888988888753

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.47  E-value=0.00011  Score=70.05  Aligned_cols=42  Identities=29%  Similarity=0.422  Sum_probs=39.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      +..++++|+.|+||||++..|+.++...+.+|.++|+|+..+
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~  139 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP  139 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence            568999999999999999999999999999999999998765

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.45  E-value=0.00011  Score=68.15  Aligned_cols=38  Identities=29%  Similarity=0.465  Sum_probs=33.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ++.|+|+|..||||||+++.|+.++-..|..+.++|.|
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D   41 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD   41 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence            56899999999999999999999987778777777776

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.45  E-value=7.3e-05  Score=64.91  Aligned_cols=36  Identities=11%  Similarity=0.157  Sum_probs=30.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYL   71 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll-~~~~~v~~l   71 (376)
                      .+..++++|++|+|||||++.+++.+. ..|..+.++
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~   73 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF   73 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence            367899999999999999999999987 667666663

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.45  E-value=0.0002  Score=63.87  Aligned_cols=40  Identities=23%  Similarity=0.267  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .++..|.|+|+.|||||||++.|+..+-..|..+.++..|
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d   59 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD   59 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecC
Confidence            3578999999999999999999999875444445565555

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.43  E-value=9.9e-05  Score=66.21  Aligned_cols=38  Identities=29%  Similarity=0.313  Sum_probs=34.1

Q ss_pred             EEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           39 IAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        39 ~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      +|.|++.| |+||||++..|+..+.++| +|+++|+|+..
T Consensus         2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~   40 (209)
T 3cwq_A            2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNR   40 (209)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTC
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCC
Confidence            57777766 9999999999999999999 99999999864

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=97.43  E-value=0.00014  Score=71.20  Aligned_cols=43  Identities=16%  Similarity=0.157  Sum_probs=38.6

Q ss_pred             CCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           36 PPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        36 ~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .+++|.|.|+| |+||||++..|+..+.++|.+|+++|+| .++.
T Consensus       142 ~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D-~~~~  185 (373)
T 3fkq_A          142 KSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE-QCGT  185 (373)
T ss_dssp             SCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC-TTCC
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC-CCCC
Confidence            46788898876 8999999999999999999999999999 7765

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.42  E-value=0.00013  Score=69.27  Aligned_cols=43  Identities=21%  Similarity=0.315  Sum_probs=39.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      .+.+++++|+.|+||||+++.|+..+...+.+|.++|+|+..+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~  139 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP  139 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH
Confidence            4668999999999999999999999988899999999998653

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.42  E-value=6.9e-05  Score=66.40  Aligned_cols=50  Identities=22%  Similarity=0.389  Sum_probs=28.1

Q ss_pred             ChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           18 PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        18 p~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      |..|..+.+.+.-..  .++..|+++|+.||||||+++.|+..+     ...++|.|
T Consensus         8 ~~~~~~~~~~~~~~~--~~~~~i~l~G~~GsGKsTl~~~La~~l-----~~~~i~~d   57 (199)
T 3vaa_A            8 SSGVDLGTENLYFQS--NAMVRIFLTGYMGAGKTTLGKAFARKL-----NVPFIDLD   57 (199)
T ss_dssp             ------------------CCCEEEEECCTTSCHHHHHHHHHHHH-----TCCEEEHH
T ss_pred             CCCCCCCCCceeEec--CCCCEEEEEcCCCCCHHHHHHHHHHHc-----CCCEEcch
Confidence            446777777665332  246799999999999999999999987     23456665

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=97.41  E-value=0.00018  Score=69.85  Aligned_cols=42  Identities=29%  Similarity=0.245  Sum_probs=36.1

Q ss_pred             CCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           37 PPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        37 ~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .++|+|+++| |+||||++..|+-.+.+.|++|.++|+|+ |+.
T Consensus        25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~   67 (349)
T 3ug7_A           25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP-AHS   67 (349)
T ss_dssp             SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT-TCH
T ss_pred             CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC-CCC
Confidence            4566666555 99999999999999999999999999999 653

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.40  E-value=0.00019  Score=63.92  Aligned_cols=52  Identities=21%  Similarity=0.260  Sum_probs=40.8

Q ss_pred             HHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           24 AADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        24 ~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      .++.+...+ -.++..++|+|++|+|||||++.++..+...+.+|.|++.+..
T Consensus        11 ~Ld~~~~gg-i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~   62 (235)
T 2w0m_A           11 DFDKLIQGG-IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES   62 (235)
T ss_dssp             HHHGGGTTS-EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred             HHHHHhcCC-CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence            345554311 1246789999999999999999999888888889999998753

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=97.40  E-value=0.00014  Score=67.20  Aligned_cols=42  Identities=21%  Similarity=0.189  Sum_probs=37.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ++|.|.|.-|+||||++..|+..+.++|++|+++|+|+..+.
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~   43 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADS   43 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCS
T ss_pred             cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCH
Confidence            357778877999999999999999999999999999997654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.40  E-value=0.00018  Score=68.74  Aligned_cols=42  Identities=24%  Similarity=0.232  Sum_probs=38.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      .+..|+|+|+.||||||+++.|+.++-..+.+|.+.+.|+..
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r  142 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR  142 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC
Confidence            467999999999999999999999998888999999999743

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.40  E-value=0.00015  Score=70.00  Aligned_cols=42  Identities=26%  Similarity=0.242  Sum_probs=38.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      ++..++++|+.||||||+++.|+.++...+.+|.+.+.|+..
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r  169 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR  169 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc
Confidence            477999999999999999999999998889999999998743

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.36  E-value=0.0002  Score=64.08  Aligned_cols=39  Identities=10%  Similarity=0.166  Sum_probs=35.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+..++|+|++|+||||+++.+++.+...+..+.+++++
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~   89 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG   89 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence            367899999999999999999999998888888888774

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=97.35  E-value=0.00018  Score=67.38  Aligned_cols=42  Identities=29%  Similarity=0.287  Sum_probs=37.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ++|.|.|.-|+||||++..|+..|.+.|++|+++|+|+..+.
T Consensus         3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~   44 (289)
T 2afh_E            3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADS   44 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCS
T ss_pred             eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCH
Confidence            467788877999999999999999999999999999997654

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.35  E-value=0.00021  Score=68.12  Aligned_cols=41  Identities=29%  Similarity=0.287  Sum_probs=37.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      ++..++++|+.||||||+++.|+.++-..+.+|.+.+.|+.
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~  139 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF  139 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence            46799999999999999999999998888899999988864

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.35  E-value=0.00012  Score=63.52  Aligned_cols=36  Identities=17%  Similarity=0.240  Sum_probs=30.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      ..|+|+|+.||||||+++.|+.++-..|..+.+++.
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~   37 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY   37 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence            368999999999999999999998766777777753

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.34  E-value=0.00035  Score=59.68  Aligned_cols=42  Identities=14%  Similarity=0.212  Sum_probs=32.8

Q ss_pred             ChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           18 PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        18 p~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      .+.+..+.+.+...    .+..++|+|++|+||||+++.+++.+..
T Consensus        28 ~~~~~~l~~~l~~~----~~~~~ll~G~~G~GKT~l~~~~~~~~~~   69 (195)
T 1jbk_A           28 DEEIRRTIQVLQRR----TKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             HHHHHHHHHHHTSS----SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcC----CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            34667776666431    2467999999999999999999999865

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.33  E-value=8.7e-05  Score=63.65  Aligned_cols=33  Identities=30%  Similarity=0.585  Sum_probs=27.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|.|+|+.||||||+++.|+..+     ...++|.|
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l-----~~~~id~d   36 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQL-----NMEFYDSD   36 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHT-----TCEEEEHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh-----CCCEEecc
Confidence            4579999999999999999999875     34677765

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.32  E-value=0.00039  Score=59.14  Aligned_cols=52  Identities=19%  Similarity=0.302  Sum_probs=39.5

Q ss_pred             hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        19 ~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ..-.+++..+..-    .+..++++|+.|+|||||++.+++.+...|.++.|++..
T Consensus        22 g~n~~~~~~l~~~----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~   73 (149)
T 2kjq_A           22 TENAELVYVLRHK----HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA   73 (149)
T ss_dssp             CCTHHHHHHCCCC----CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred             CccHHHHHHHHhc----CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence            3334555555421    477899999999999999999999988777778887653

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.32  E-value=0.00017  Score=62.42  Aligned_cols=39  Identities=28%  Similarity=0.243  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+..|.++|+.||||||+++.|+.++-..|..+..+|.|
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~   42 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD   42 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence            367899999999999999999999886667777777754

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.31  E-value=0.00015  Score=62.95  Aligned_cols=37  Identities=16%  Similarity=0.175  Sum_probs=29.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      +..|+|+|+.||||||+++.|+.++-..|....++|+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~   39 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF   39 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEeh
Confidence            4689999999999999999999987655543556654

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.31  E-value=0.00018  Score=71.81  Aligned_cols=43  Identities=21%  Similarity=0.315  Sum_probs=39.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      ++.+|+++|+.|+||||+++.|+.++...+.+|.++|+|+..+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~  139 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP  139 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCc
Confidence            3568999999999999999999999998899999999998653

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.28  E-value=0.00015  Score=68.65  Aligned_cols=40  Identities=18%  Similarity=0.321  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .+..|.|.|+.||||||+++.|.+.+-..+.++.++|+|-
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~   43 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA   43 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecch
Confidence            3578999999999999999999998766677789999883

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.27  E-value=0.00025  Score=68.54  Aligned_cols=44  Identities=25%  Similarity=0.282  Sum_probs=38.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .+.+|.++|+.|+||||+++.|+..+...+.+|.+++.|++.+.
T Consensus        55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~   98 (341)
T 2p67_A           55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV   98 (341)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCC
Confidence            47899999999999999999999999888999999999997653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.27  E-value=0.00029  Score=68.87  Aligned_cols=41  Identities=29%  Similarity=0.287  Sum_probs=37.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      ++.+++++|+.||||||+++.|+.++-..+.+|.+.+.|+.
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~  196 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF  196 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccccc
Confidence            46799999999999999999999998888899999998864

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.26  E-value=0.00034  Score=63.15  Aligned_cols=41  Identities=20%  Similarity=0.271  Sum_probs=36.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      ++..++|+|++|+|||||+..++..+++.+.+|.|++.+..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~   62 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH   62 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence            46789999999999999999998888888999999998754

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.25  E-value=0.0003  Score=71.42  Aligned_cols=41  Identities=27%  Similarity=0.281  Sum_probs=37.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      .+.+++|+|+.||||||+++.|+.++...+++|.+.+.|+.
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~  332 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF  332 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTT
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCccc
Confidence            46799999999999999999999998888899999988864

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.24  E-value=0.00023  Score=63.59  Aligned_cols=39  Identities=26%  Similarity=0.335  Sum_probs=34.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll-~~~~~v~~lDlD   74 (376)
                      .+..|+|+|+.||||||+++.|+.++- ..|..+.++|.|
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d   63 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD   63 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence            367899999999999999999999986 677778888855

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.23  E-value=0.00021  Score=60.87  Aligned_cols=32  Identities=22%  Similarity=0.350  Sum_probs=26.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ..|+|+|+.||||||+++.|+..+     ...++|.|
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l-----~~~~i~~d   33 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKEL-----KYPIIKGS   33 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHH-----CCCEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh-----CCeeecCc
Confidence            368999999999999999999886     24466666

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.23  E-value=0.00019  Score=63.46  Aligned_cols=34  Identities=15%  Similarity=0.400  Sum_probs=28.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      +..|+|+|+.||||||+++.|+..+     ...++|.|.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l-----g~~~i~~d~   51 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC-----GYPFIEGDA   51 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH-----TCCEEEGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh-----CCEEEeCCc
Confidence            4689999999999999999999986     345677764

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.23  E-value=0.00012  Score=63.64  Aligned_cols=32  Identities=44%  Similarity=0.670  Sum_probs=27.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ++|+|+|+.||||||+++.|+.++     ...++|.|
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l-----g~~~id~D   34 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKAL-----GVGLLDTD   34 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH-----TCCEEEHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc-----CCCEEeCc
Confidence            579999999999999999999976     24467777

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.23  E-value=0.00025  Score=62.77  Aligned_cols=35  Identities=20%  Similarity=0.420  Sum_probs=29.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      ++..|.|+|+.||||||+++.|+..+     ...++|.|.
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~   62 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADA   62 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccc
Confidence            46799999999999999999999876     345667664

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.22  E-value=0.00028  Score=62.18  Aligned_cols=36  Identities=19%  Similarity=0.195  Sum_probs=32.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      ..++++|+.|+||||+++.+++.+...+..+.++++
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~   90 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV   90 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence            689999999999999999999999888888888755

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.22  E-value=0.00023  Score=61.21  Aligned_cols=34  Identities=26%  Similarity=0.468  Sum_probs=28.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ++..|.|+|+.||||||+++.|+..+     ...++|.|
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d   40 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGD   40 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGG
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCc
Confidence            36789999999999999999999875     34567776

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.20  E-value=0.00027  Score=62.71  Aligned_cols=38  Identities=34%  Similarity=0.400  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      ++..|.|+|+.|||||||++.|+..+-   .++.|++.|.-
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~---~~i~~v~~d~~   42 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTLG---ERVALLPMDHY   42 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHG---GGEEEEEGGGC
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEecCcc
Confidence            467899999999999999999998761   14777777753

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=97.20  E-value=0.00029  Score=69.32  Aligned_cols=43  Identities=21%  Similarity=0.249  Sum_probs=36.8

Q ss_pred             CCCEEEEEcCC-CCcHHHHHHHHHHHHH------HcCCcEEEEcCCCCCCC
Q 017141           36 PPPIAFICGAK-NCGKTTFSRHLVNVLL------QRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        36 ~~~~vlV~G~~-~sGKSTl~r~L~N~ll------~~~~~v~~lDlD~GQ~~   79 (376)
                      .+.+|.|++.| |+||||++-.|+-.+.      +.|++|+++|+|+ |+.
T Consensus       107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~-q~~  156 (398)
T 3ez2_A          107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDP-QSS  156 (398)
T ss_dssp             SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECT-TCH
T ss_pred             CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC-CCC
Confidence            35688888777 7999999999999988      4799999999999 653

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.19  E-value=0.00043  Score=59.13  Aligned_cols=41  Identities=20%  Similarity=0.220  Sum_probs=32.1

Q ss_pred             hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        19 ~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      +++..+++.+...    .+..++|+|++|+||||+++.+++.+..
T Consensus        29 ~~~~~l~~~l~~~----~~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           29 TEIRRAIQILSRR----TKNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             HHHHHHHHHHTSS----SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCC----CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            4566666666431    2567899999999999999999999865

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=97.16  E-value=0.00037  Score=67.07  Aligned_cols=39  Identities=28%  Similarity=0.232  Sum_probs=34.0

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      .+|+|+++| |+||||++..|+-.+.+.|++|.++|+|+.
T Consensus        19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~   58 (329)
T 2woo_A           19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA   58 (329)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred             CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence            455555555 899999999999999999999999999996

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.15  E-value=0.00025  Score=61.98  Aligned_cols=35  Identities=20%  Similarity=0.224  Sum_probs=29.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+.+|+++|+.||||||+++.|+..++    ...++|+|
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~l~----g~~~id~d   43 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAELD----GFQHLEVG   43 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHST----TEEEEEHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcC----CCEEeeHH
Confidence            367899999999999999999998732    46788877

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=97.14  E-value=0.00047  Score=66.05  Aligned_cols=42  Identities=21%  Similarity=0.206  Sum_probs=38.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      .++|.|.|-=|+||||.+-.|+-.|.+.|++|.+||+||.-+
T Consensus        48 aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~   89 (314)
T 3fwy_A           48 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHD   89 (314)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCC
T ss_pred             ceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCc
Confidence            568899997799999999999999999999999999999544

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.14  E-value=0.00047  Score=61.13  Aligned_cols=37  Identities=35%  Similarity=0.398  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .+..++|+|+.|+|||||++.|+.   ..+.+|.|++.+.
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~   55 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG   55 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence            477999999999999999999998   6688999999876

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.13  E-value=0.00021  Score=62.01  Aligned_cols=33  Identities=24%  Similarity=0.384  Sum_probs=27.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ++.|+++|+.||||||+++.|+.++     ...++|.|
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l-----~~~~i~~d   37 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT-----KRILYDSD   37 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH-----CCCEEEHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh-----CCCEEECh
Confidence            5689999999999999999999887     33456655

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.13  E-value=0.00028  Score=61.43  Aligned_cols=36  Identities=22%  Similarity=0.299  Sum_probs=27.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ++..+.|+|+.||||||++|.|+..   .+....++|.|
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d   43 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSD   43 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence            3678999999999999999999875   22334555554

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.13  E-value=0.00021  Score=61.59  Aligned_cols=32  Identities=31%  Similarity=0.505  Sum_probs=27.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ++|+|+|+.||||||+++.|+..+     ...++|.|
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l-----~~~~~d~d   36 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDL-----DLVFLDSD   36 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHH-----TCEEEEHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc-----CCCEEccc
Confidence            369999999999999999999886     35677776

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.13  E-value=0.00049  Score=66.80  Aligned_cols=44  Identities=23%  Similarity=0.227  Sum_probs=37.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .+++|.|+|++|+|||||...|+..+...+.+++++..||+...
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~  116 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCT  116 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCC
Confidence            47899999999999999999999999888999999999998653

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.12  E-value=0.00062  Score=62.25  Aligned_cols=39  Identities=18%  Similarity=0.083  Sum_probs=37.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      ..+|++.|+.|+||||++-.++.++.+.|++|.++|+|+
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~   44 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET   44 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            457999999999999999999999999999999999999

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.11  E-value=0.00023  Score=61.72  Aligned_cols=33  Identities=24%  Similarity=0.262  Sum_probs=27.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|+++|+.||||||+++.|+.++     ...++|.|
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l-----~~~~i~~d   36 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQEL-----GFKKLSTG   36 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHH-----TCEEECHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh-----CCeEecHH
Confidence            5689999999999999999999876     24566665

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.11  E-value=0.00042  Score=61.63  Aligned_cols=40  Identities=23%  Similarity=0.194  Sum_probs=34.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      .++|+|+|..|+|||||+..|++.+... .++..++.|++.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~   69 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVS   69 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCC
Confidence            5799999999999999999999987544 789999999863

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=97.10  E-value=0.00029  Score=68.67  Aligned_cols=42  Identities=26%  Similarity=0.303  Sum_probs=36.6

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ++|.|++.| |+||||++..|+-.+.+.|++|++||+|+..+.
T Consensus         2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~   44 (361)
T 3pg5_A            2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNA   44 (361)
T ss_dssp             EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTT
T ss_pred             eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCCh
Confidence            357777666 799999999999999999999999999988554

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=97.10  E-value=0.00022  Score=70.38  Aligned_cols=43  Identities=23%  Similarity=0.333  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCC-CCcHHHHHHHHHHHHH------HcCCcEEEEcCCCCCCC
Q 017141           36 PPPIAFICGAK-NCGKTTFSRHLVNVLL------QRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        36 ~~~~vlV~G~~-~sGKSTl~r~L~N~ll------~~~~~v~~lDlD~GQ~~   79 (376)
                      .+.+|.|++.| |+||||++-.|+-.+.      +.|++|+++|+|+ |+.
T Consensus       110 ~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~-~~~  159 (403)
T 3ez9_A          110 SPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDP-QAS  159 (403)
T ss_dssp             SCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESS-SSG
T ss_pred             CceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC-CCC
Confidence            35678888777 8999999999999988      6899999999999 554

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.09  E-value=0.00031  Score=61.23  Aligned_cols=33  Identities=27%  Similarity=0.382  Sum_probs=27.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|+|+|+.||||||+++.|+.++     ...++|.|
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~l-----~~~~i~~d   41 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQKY-----GYTHLSTG   41 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh-----CCeEEcHH
Confidence            6789999999999999999999886     23466665

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.08  E-value=0.00029  Score=61.16  Aligned_cols=33  Identities=24%  Similarity=0.405  Sum_probs=26.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|+|+|+.||||||+++.|+.++     ...++|.|
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d   35 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKY-----GYTHLSAG   35 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh-----CCeEEeHH
Confidence            4689999999999999999999876     23456654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.07  E-value=0.0008  Score=64.99  Aligned_cols=53  Identities=26%  Similarity=0.223  Sum_probs=43.3

Q ss_pred             HHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           23 DAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        23 ~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      .+++.+.-..  ..+.++.|+|++|+|||||.+.|+..+...+.++.++..|++.
T Consensus        43 ~~l~~i~~~~--~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~   95 (337)
T 2qm8_A           43 DLIDAVLPQT--GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS   95 (337)
T ss_dssp             HHHHHHGGGC--CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             HHHHhCCccc--CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence            4555554222  3478999999999999999999999988888999999999864

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=97.07  E-value=0.00044  Score=67.32  Aligned_cols=41  Identities=27%  Similarity=0.253  Sum_probs=34.6

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHH--HcCCcEEEEcCCCCCCC
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLL--QRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll--~~~~~v~~lDlD~GQ~~   79 (376)
                      .+|+|+++| |+||||++..|+-.+.  +.|++|.++|+|++ +.
T Consensus        18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~-~~   61 (354)
T 2woj_A           18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA-HN   61 (354)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS-CC
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC-CC
Confidence            455555444 8999999999999999  89999999999996 53

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.06  E-value=0.00035  Score=58.71  Aligned_cols=48  Identities=15%  Similarity=0.057  Sum_probs=34.7

Q ss_pred             ChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017141           18 PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKK   67 (376)
Q Consensus        18 p~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~   67 (376)
                      .+.|.++.+.+..-..  .+.-|++.|++|+|||+++|.+.+...+.+..
T Consensus         7 s~~~~~~~~~~~~~a~--~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~   54 (145)
T 3n70_A            7 SEWINQYRRRLQQLSE--TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGE   54 (145)
T ss_dssp             SHHHHHHHHHHHHHTT--CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSC
T ss_pred             CHHHHHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHHHhCCccCCC
Confidence            4578888876643221  23469999999999999999999876544433

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.05  E-value=0.00032  Score=61.28  Aligned_cols=33  Identities=33%  Similarity=0.377  Sum_probs=27.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|+|+|+.||||||+++.|+.++     ...++|.|
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l-----~~~~i~~d   44 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKY-----GFTHLSTG   44 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH-----TCEEEEHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh-----CCeEEcHH
Confidence            4689999999999999999999987     24566654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.05  E-value=0.00085  Score=62.50  Aligned_cols=41  Identities=12%  Similarity=0.261  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~G   76 (376)
                      ++..++|+|++||||||+.+.|+...-.. ..++.+.+-+++
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~   65 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE   65 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce
Confidence            46799999999999999999999987655 567777665543

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.05  E-value=0.00039  Score=59.60  Aligned_cols=33  Identities=21%  Similarity=0.400  Sum_probs=26.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ..|+|+|+.||||||+++.|+.+    .....+++.|
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d   35 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAK----NPGFYNINRD   35 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH----STTEEEECHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHH
Confidence            47999999999999999999883    2345677765

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.05  E-value=0.00035  Score=60.08  Aligned_cols=35  Identities=23%  Similarity=0.327  Sum_probs=26.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|+|+|+.||||||+++.|+..+   +.....++.|
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D   37 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVD   37 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccc
Confidence            4679999999999999999999876   2233344555

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=97.04  E-value=0.00046  Score=64.72  Aligned_cols=42  Identities=19%  Similarity=0.194  Sum_probs=36.8

Q ss_pred             CCEEEEEc---CCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           37 PPIAFICG---AKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        37 ~~~vlV~G---~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      +++|.|++   .-|+||||++..|+..+.+.|++|+++|+|+..+
T Consensus        34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~   78 (298)
T 2oze_A           34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQAT   78 (298)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH
T ss_pred             CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            45777877   5589999999999999999999999999999754

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.04  E-value=0.0006  Score=59.99  Aligned_cols=27  Identities=15%  Similarity=0.133  Sum_probs=24.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      +..|+|+|+.||||||+++.|+.++-.
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            568999999999999999999998743

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.04  E-value=0.00069  Score=58.74  Aligned_cols=34  Identities=26%  Similarity=0.256  Sum_probs=28.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      .|.|+|+.||||||+++.|++++-..|..+...|
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d   35 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR   35 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            5899999999999999999999866666655443

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.03  E-value=0.00047  Score=65.64  Aligned_cols=39  Identities=33%  Similarity=0.434  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHH--HcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLL--QRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll--~~~~~v~~lDlD   74 (376)
                      .+..|.|+|+.|||||||++.|+..+-  -....+.++++|
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d  119 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD  119 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecC
Confidence            467999999999999999999998764  245568888887

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.02  E-value=0.00039  Score=62.32  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=27.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      .+..|+|+|+.||||||+++.|+.++     ...++|+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~   35 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF-----HAAHLAT   35 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc-----CceEEeh
Confidence            36789999999999999999999986     2345665

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.02  E-value=0.00095  Score=64.19  Aligned_cols=39  Identities=36%  Similarity=0.382  Sum_probs=29.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHH--cCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ--RYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~--~~~~v~~lDlD   74 (376)
                      .+..|.|+|+.|||||||++.|...+-.  .+.++.++..|
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D  131 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD  131 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence            3558999999999999999998765422  24567777776

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.01  E-value=0.00033  Score=59.86  Aligned_cols=32  Identities=41%  Similarity=0.730  Sum_probs=27.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ..|+|+|+.||||||+++.|+.++     ...++|.|
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l-----g~~~id~d   34 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL-----GYEFVDTD   34 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH-----TCEEEEHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh-----CCcEEccc
Confidence            469999999999999999999986     24577766

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.01  E-value=0.00036  Score=60.33  Aligned_cols=33  Identities=24%  Similarity=0.483  Sum_probs=27.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ++.|+|+|+.||||||+++.|+.++     ...++|+|
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~~-----~~~~~~~d   43 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASKS-----GLKYINVG   43 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHh-----CCeEEEHH
Confidence            5679999999999999999999886     34566665

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.00  E-value=0.00042  Score=63.69  Aligned_cols=38  Identities=32%  Similarity=0.479  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHH-----cCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQ-----RYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~-----~~~~v~~lDlD   74 (376)
                      +.+|.|+|+.||||||+|+.|+..+--     .+.++.++|+|
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D   64 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQD   64 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGG
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecC
Confidence            468999999999999999999987522     23567888887

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.00  E-value=0.00031  Score=61.05  Aligned_cols=26  Identities=35%  Similarity=0.552  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+..|+|+|+.||||||+++.|+.++
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            35689999999999999999999886

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.98  E-value=0.00035  Score=59.52  Aligned_cols=31  Identities=26%  Similarity=0.453  Sum_probs=25.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +|+|+|+.||||||+++.|+.++     ...++|+|
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l-----~~~~i~~d   32 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL-----NIPFYDVD   32 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH-----TCCEEEHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh-----CCCEEECc
Confidence            68999999999999999999986     23456665

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.97  E-value=0.00093  Score=59.03  Aligned_cols=35  Identities=26%  Similarity=0.343  Sum_probs=29.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      .+..|+|+|+.||||||+++.|+.++-..+..+..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~   42 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL   42 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence            36789999999999999999999998666666643

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.97  E-value=0.00032  Score=62.69  Aligned_cols=59  Identities=25%  Similarity=0.167  Sum_probs=41.7

Q ss_pred             CChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        17 ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      +.+.+.+..+.+...-.....++|+|+|..|+|||||+..|++.+... .++..++.|++
T Consensus        18 ~~~~~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~   76 (226)
T 2hf9_A           18 ILKANKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVI   76 (226)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETT
T ss_pred             hhhhhHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCC
Confidence            344555555544321111135799999999999999999999887554 67889998875

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.97  E-value=0.00039  Score=64.08  Aligned_cols=56  Identities=20%  Similarity=0.259  Sum_probs=39.2

Q ss_pred             CChhHHHHHHHhh----cc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           17 IPREWSDAADSIA----YD-SNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        17 ip~~W~~~~~~i~----~~-~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .++++.++.+.+.    .+ .....+..|+++|+.||||||+++.|+..+   +..+.++|.|.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~   67 (253)
T 2p5t_B            7 TDSEFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDS   67 (253)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGG
T ss_pred             CHHHHHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHH
Confidence            4556666666552    11 122236689999999999999999999875   23467788874

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.95  E-value=0.00038  Score=59.52  Aligned_cols=33  Identities=30%  Similarity=0.391  Sum_probs=27.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      -..|+|+|+.||||||+++.|+.++     ..-++|+|
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~l-----g~~~id~D   39 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLAL-----KLEVLDTD   39 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHH-----TCCEEEHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHh-----CCCEEECh
Confidence            4589999999999999999999986     23466765

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.94  E-value=0.00044  Score=61.49  Aligned_cols=34  Identities=21%  Similarity=0.204  Sum_probs=29.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      ..+|.|+|+.||||||+++.|+..+     ...++|+|-
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~l-----g~~vid~D~   45 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKY-----GAHVVNVDR   45 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc-----CCEEEECcH
Confidence            5789999999999999999999875     467888873

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.92  E-value=0.0018  Score=63.02  Aligned_cols=63  Identities=14%  Similarity=0.275  Sum_probs=42.8

Q ss_pred             CCCCCCCCCCCccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCCC
Q 017141            4 YMPQTENPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDV   75 (376)
Q Consensus         4 ~~~~~~~~~~~~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~   75 (376)
                      |++........+..|+.+.+++    ..    ++..++|+|++||||||+.+.|++.+-.. +..+..++ |+
T Consensus        98 ~~~~~~~~l~~lg~~~~l~~l~----~~----~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~  161 (356)
T 3jvv_A           98 TIPSKVLTMEELGMGEVFKRVS----DV----PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DP  161 (356)
T ss_dssp             EECCSCCCTTTTTCCHHHHHHH----HC----SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SS
T ss_pred             ECCCCCCCHHHcCChHHHHHHH----hC----CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-Cc
Confidence            3444445556677777555542    11    24589999999999999999999998765 45554443 44

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.92  E-value=0.00037  Score=61.44  Aligned_cols=32  Identities=28%  Similarity=0.392  Sum_probs=25.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .+|.|+|+.||||||+++.|+. +     ...++|+|-
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~-----g~~~i~~d~   33 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-L-----GAYVLDADK   33 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-T-----TCEEEEHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-C-----CCEEEEccH
Confidence            3799999999999999999998 4     355666653

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.92  E-value=0.00071  Score=59.18  Aligned_cols=44  Identities=16%  Similarity=0.138  Sum_probs=31.5

Q ss_pred             hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017141           20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKK   67 (376)
Q Consensus        20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~   67 (376)
                      .+..+.+.+...    ..+.+++.|+.|+||||+++.+++.+...+..
T Consensus        25 ~~~~l~~~l~~~----~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~   68 (226)
T 2chg_A           25 VIQRLKGYVERK----NIPHLLFSGPPGTGKTATAIALARDLFGENWR   68 (226)
T ss_dssp             HHHHHHHHHHTT----CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGG
T ss_pred             HHHHHHHHHhCC----CCCeEEEECCCCCCHHHHHHHHHHHHhccccc
Confidence            455555544422    23349999999999999999999998765433

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.90  E-value=0.00049  Score=60.67  Aligned_cols=33  Identities=21%  Similarity=0.191  Sum_probs=26.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|+|+|+.||||||+++.|+.++   +.  .++|+|
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~l---~~--~~i~~d   52 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEKL---GI--PQISTG   52 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH---TC--CEEEHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh---CC--cEEehh
Confidence            5689999999999999999999986   22  356654

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.90  E-value=0.00056  Score=63.23  Aligned_cols=34  Identities=21%  Similarity=0.245  Sum_probs=28.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      .|+|+|+.||||||+++.|+..+     ...+++.|--|
T Consensus         3 li~I~G~~GSGKSTla~~La~~~-----~~~~i~~D~~~   36 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET-----GWPVVALDRVQ   36 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH-----CCCEEECCSGG
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC-----CCeEEeccHHh
Confidence            68999999999999999999876     34577887543

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.90  E-value=0.00049  Score=59.57  Aligned_cols=33  Identities=24%  Similarity=0.403  Sum_probs=27.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|.|+|+.||||||+++.|+.++     ...++|.|
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l-----~~~~i~~d   38 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDF-----GWVHLSAG   38 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh-----CCeEeeHH
Confidence            4689999999999999999999876     34566664

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.89  E-value=0.002  Score=62.33  Aligned_cols=85  Identities=14%  Similarity=0.197  Sum_probs=53.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEeccc-CCCCCCCCCCCCCceeEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDT-LTPDLTIPCLKTPKRCYFFGDV  115 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~-~~~~~~~~~~~~p~~~~f~G~~  115 (376)
                      ++.|+|+||.|||||||++.|+..+     ..-++|+|--|---+.      .+.+. |.+. .  .-..|  .||++..
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~qvYr~m------dIgTakp~~e-E--~~gvp--hhlidi~  103 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSDKMQVYKGL------DITTNKISVP-D--RGGVP--HHLLGEV  103 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECCSSTTBSSC------TTTTTCCCSG-G--GTTCC--EESSSCB
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHC-----CCcEEcccccccccce------eeecCCCCHH-H--HcCCC--Eeecccc
Confidence            4689999999999999999998875     5678999977632111      11111 1110 0  00122  4788888


Q ss_pred             CC-C--CChHHHHHHHHHHHHHHHH
Q 017141          116 SS-K--RDPTAYLKYITTLYDYYRK  137 (376)
Q Consensus       116 sp-~--~~~~~y~~~v~~L~~~~~~  137 (376)
                      .| .  -+...|.+...++++.+..
T Consensus       104 ~~~~e~~s~~~F~~~a~~~i~~i~~  128 (339)
T 3a8t_A          104 DPARGELTPADFRSLAGKAVSEITG  128 (339)
T ss_dssp             CGGGCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CcccCccCHHHHHHHHHHHHHHHHh
Confidence            77 3  2566777777766655443

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.89  E-value=0.0011  Score=64.51  Aligned_cols=40  Identities=25%  Similarity=0.274  Sum_probs=36.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .+..++|.|+.|+||||||..++..+.+.+.+|+|+|++-
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~   99 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH   99 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            4678999999999999999999999988899999999974

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.89  E-value=0.00044  Score=60.90  Aligned_cols=33  Identities=24%  Similarity=0.357  Sum_probs=27.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|+|+|+.||||||+++.|+.++     ...++|+|
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~~-----g~~~i~~d   47 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKDY-----SFVHLSAG   47 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS-----SCEEEEHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc-----CceEEeHH
Confidence            5689999999999999999999875     34677766

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.87  E-value=0.0013  Score=61.77  Aligned_cols=40  Identities=20%  Similarity=0.160  Sum_probs=34.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~   75 (376)
                      ++..++|+|++|+|||||++.++..+... |.+|.|++.+.
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~   74 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE   74 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence            47799999999999999999999988765 66899988763

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.86  E-value=0.0011  Score=64.79  Aligned_cols=41  Identities=24%  Similarity=0.303  Sum_probs=36.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      .+..++|.|+.|+|||||+..++..+...+.+|+|+|....
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s  100 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA  100 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence            46799999999999999999999999888999999987643

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.86  E-value=0.00061  Score=60.96  Aligned_cols=25  Identities=28%  Similarity=0.531  Sum_probs=22.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +.+|.|+|+.||||||+++.|+..+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999999875

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.85  E-value=0.00071  Score=63.81  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=28.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+..|+|+|+.||||||+++.|+..+   .....+||.|
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D   67 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDND   67 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEech
Confidence            35689999999999999999998864   1245666664

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.85  E-value=0.00054  Score=60.70  Aligned_cols=36  Identities=31%  Similarity=0.380  Sum_probs=29.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .+..|.|+|+.||||||+++.|+..+    ..+.+++.|.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~----~~~~~i~~D~   55 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHL----PNCSVISQDD   55 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTS----TTEEEEEGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc----CCcEEEeCCc
Confidence            35689999999999999999988753    2578888883

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.84  E-value=0.00075  Score=64.12  Aligned_cols=37  Identities=27%  Similarity=0.253  Sum_probs=32.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      +..+++.|++|+||||+++.+++.+...+..+.++++
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~   73 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA   73 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence            4679999999999999999999999887777887764

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.83  E-value=0.0013  Score=57.94  Aligned_cols=34  Identities=26%  Similarity=0.268  Sum_probs=28.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA   69 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~   69 (376)
                      .+..|.|+|+.||||||+++.|+.++-..+..+.
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~   42 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK   42 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence            3679999999999999999999998765555553

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.83  E-value=0.00053  Score=58.01  Aligned_cols=20  Identities=30%  Similarity=0.619  Sum_probs=18.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHL   57 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L   57 (376)
                      +.|+|+|+.||||||+++.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47999999999999999999

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.81  E-value=0.00076  Score=59.17  Aligned_cols=33  Identities=18%  Similarity=0.324  Sum_probs=26.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      .+..|.|+|+.||||||+++.|+.++  .|..+..
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~   35 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI--PANTIKY   35 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEE
Confidence            36789999999999999999999876  3344444

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.81  E-value=0.00055  Score=60.89  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|+|+|+.||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998876

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=96.80  E-value=0.0011  Score=68.47  Aligned_cols=42  Identities=31%  Similarity=0.423  Sum_probs=36.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ...+++.|..|+||||++-.|+-.+.+.|++|.+||+|+ ++.
T Consensus         8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~-~~~   49 (589)
T 1ihu_A            8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP-ASN   49 (589)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT-TCC
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC-CcC
Confidence            456777777799999999999999999999999999999 454

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.78  E-value=0.0015  Score=63.64  Aligned_cols=40  Identities=25%  Similarity=0.373  Sum_probs=36.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .+..++|.|+.|+||||||..++..+.+.+.+|+|+|++-
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~  101 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH  101 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4678999999999999999999999999999999999964

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.77  E-value=0.00058  Score=61.25  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=27.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|+|+|+.||||||+++.|+.++     ...++|+|
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~l-----~~~~i~~d   37 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTKY-----QLAHISAG   37 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHH-----CCEECCHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh-----CCceecHH
Confidence            5689999999999999999999986     23455553

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.77  E-value=0.00057  Score=61.60  Aligned_cols=33  Identities=27%  Similarity=0.317  Sum_probs=27.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|+|+|+.||||||+++.|+.++     ...++|+|
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d   39 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTHF-----ELKHLSSG   39 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHS-----SSEEEEHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc-----CCeEEech
Confidence            5789999999999999999999875     33466654

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.76  E-value=0.0014  Score=62.02  Aligned_cols=29  Identities=28%  Similarity=0.483  Sum_probs=25.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR   64 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~   64 (376)
                      .+..|.|+|+.|||||||++.|...+-..
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~   58 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK   58 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            46789999999999999999999988654

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.76  E-value=0.00079  Score=61.71  Aligned_cols=33  Identities=30%  Similarity=0.219  Sum_probs=27.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      .+.+|+|+|+.||||||+|+.|++++     ...++++
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~-----g~~~is~   60 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSH-----CYCHLST   60 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh-----CCeEEec
Confidence            46799999999999999999999876     3445554

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.75  E-value=0.002  Score=61.65  Aligned_cols=56  Identities=23%  Similarity=0.298  Sum_probs=38.8

Q ss_pred             hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc---CCcEEEEcCC
Q 017141           19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR---YKKVAYLDTD   74 (376)
Q Consensus        19 ~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~---~~~v~~lDlD   74 (376)
                      ++.+.+.+.+........+..++|.|+.|+||||+++.+++.+...   +..+.++++.
T Consensus        27 ~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~   85 (386)
T 2qby_A           27 DQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR   85 (386)
T ss_dssp             HHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence            3455555544321011235689999999999999999999988766   5667777763

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.73  E-value=0.001  Score=58.06  Aligned_cols=38  Identities=29%  Similarity=0.399  Sum_probs=31.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      +++.|+|++|||||||++.|+..+-..+.++..+-.|.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg   40 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA   40 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence            47899999999999999999999887776666666654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.73  E-value=0.0047  Score=59.20  Aligned_cols=85  Identities=15%  Similarity=0.073  Sum_probs=52.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecc-cCCCCCCCCCCCCCceeEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVD-TLTPDLTIPCLKTPKRCYFFGDV  115 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~-~~~~~~~~~~~~~p~~~~f~G~~  115 (376)
                      ++.|+|+||+||||||+++.|+..+     ...++++|--|--.+.+      +-+ +|.++-   .-..  ..||++..
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds~QvYr~~~------igTakp~~~E---~~gv--phhlid~~   66 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDSMQVYRGMD------IGTAKITAEE---MDGV--PHHLIDIK   66 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCGGGGBTTCC------TTTTCCCHHH---HTTC--CEESSSCB
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCcccceeeee------ecCCCCCHHH---HcCC--CEEEeccC
Confidence            4678999999999999999998775     45678887654322211      011 121100   0011  25888988


Q ss_pred             CCCC--ChHHHHHHHHHHHHHHHH
Q 017141          116 SSKR--DPTAYLKYITTLYDYYRK  137 (376)
Q Consensus       116 sp~~--~~~~y~~~v~~L~~~~~~  137 (376)
                      +|..  +...|...+.+.++.+.+
T Consensus        67 ~~~e~~s~~~F~~~a~~~i~~i~~   90 (322)
T 3exa_A           67 DPSESFSVADFQDLATPLITEIHE   90 (322)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             ChhhhccHHHHHHHHHHHHHHHHh
Confidence            8866  455677666666655544

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.70  E-value=0.001  Score=59.20  Aligned_cols=39  Identities=23%  Similarity=0.340  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHH------cCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ------RYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~------~~~~v~~lDlD   74 (376)
                      ++..+.|+|++|||||||++.|+..+..      ...++.+++.+
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~   68 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE   68 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence            4679999999999999999999986543      24557777765

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.70  E-value=0.00061  Score=59.67  Aligned_cols=32  Identities=34%  Similarity=0.346  Sum_probs=27.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|.|+|+.||||||+++.|+..      ...++|.|
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~------g~~~id~d   39 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW------GYPVLDLD   39 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT------TCCEEEHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC------CCEEEccc
Confidence            568999999999999999999885      35577887

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.68  E-value=0.0013  Score=59.16  Aligned_cols=40  Identities=25%  Similarity=0.254  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHH------cCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ------RYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~------~~~~v~~lDlD~   75 (376)
                      .+..++|+|+.|+|||||++.|+...+.      .+.+++|++.+.
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            4679999999999999999999986443      256788888753

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.68  E-value=0.0054  Score=60.72  Aligned_cols=97  Identities=12%  Similarity=0.155  Sum_probs=58.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecc-cCCCCCCCCCCCCCceeEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVD-TLTPDLTIPCLKTPKRCYFFGDV  115 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~-~~~~~~~~~~~~~p~~~~f~G~~  115 (376)
                      .+.|+|+||+|||||||++.|+..+     ...++++|--|=--+.+      +.+ .|.++-   .-..  ..||++..
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~-----~~~iis~Ds~QvYr~l~------i~T~kp~~~E---~~gv--~hhlid~~   65 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKF-----NGEVINSDSMQVYKDIP------IITNKHPLQE---REGI--PHHVMNHV   65 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHH-----TEEEEECCTTTTBSSCT------TTTTCCCGGG---TTTC--CEESCSCB
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHC-----CCeEeecCccceecccc------cccCCCCHHH---HcCc--hhhcCCcc
Confidence            4578999999999999999999887     23467877655332111      001 121110   0011  25889988


Q ss_pred             CCCC--ChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCC
Q 017141          116 SSKR--DPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPG  161 (376)
Q Consensus       116 sp~~--~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~G  161 (376)
                      ++..  +...|.+.+.++++.+.++            ...|+||=-.|
T Consensus        66 ~~~~~~s~~~F~~~a~~~i~~i~~~------------g~~pilVGGTg  101 (409)
T 3eph_A           66 DWSEEYYSHRFETECMNAIEDIHRR------------GKIPIVVGGTH  101 (409)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHHHHTT------------TCEEEEECSCG
T ss_pred             ChHhHhhHHHHHHHHHHHHHHHHhc------------CCCEEEECChH
Confidence            8865  4567777776666554432            45677764444

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.68  E-value=0.00092  Score=59.91  Aligned_cols=33  Identities=24%  Similarity=0.233  Sum_probs=27.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|+|+|+.||||||+++.|+.++     ...++|+|
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d   37 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEY-----GLAHLSTG   37 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh-----CceEEehh
Confidence            5789999999999999999999987     23455553

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.68  E-value=0.0019  Score=63.15  Aligned_cols=41  Identities=24%  Similarity=0.302  Sum_probs=37.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      .+..++|.|+.|+||||||..++..+.+.+.+|+|+|++..
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s  113 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA  113 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence            46789999999999999999999999888999999999853

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.67  E-value=0.00061  Score=60.70  Aligned_cols=31  Identities=19%  Similarity=0.272  Sum_probs=24.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +|+|+|+.||||||+++.|+..+     ...++|.|
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d   32 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY-----GIPHISTG   32 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS-----SCCEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCcEEeHH
Confidence            68999999999999999998764     34455553

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.66  E-value=0.0014  Score=59.86  Aligned_cols=26  Identities=23%  Similarity=0.462  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..|.|+|+.||||||+++.|+..+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999999876

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.66  E-value=0.0012  Score=59.89  Aligned_cols=33  Identities=27%  Similarity=0.249  Sum_probs=27.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|+|+|+.||||||+++.|+.++     ...++++|
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d   48 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKNF-----CVCHLATG   48 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh-----CCceecHH
Confidence            5789999999999999999999986     34566654

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.66  E-value=0.0015  Score=60.09  Aligned_cols=56  Identities=11%  Similarity=0.114  Sum_probs=40.5

Q ss_pred             CChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        17 ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      -.+.+.++++.+..-..  .+..|+|.|++|+|||+++|.+++.+-+.+....++||.
T Consensus        11 ~~~~~~~~~~~~~~~~~--~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~   66 (265)
T 2bjv_A           11 EANSFLEVLEQVSHLAP--LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA   66 (265)
T ss_dssp             CCHHHHHHHHHHHHHTT--SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGG
T ss_pred             CCHHHHHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecC
Confidence            45677777766543221  245699999999999999999999876555566666664

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.65  E-value=0.0013  Score=57.26  Aligned_cols=25  Identities=16%  Similarity=0.295  Sum_probs=22.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +..+.|+||.|||||||++.|+..+
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            6789999999999999999998853

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.64  E-value=0.0027  Score=60.81  Aligned_cols=56  Identities=25%  Similarity=0.335  Sum_probs=38.0

Q ss_pred             hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc------CCcEEEEcCC
Q 017141           19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR------YKKVAYLDTD   74 (376)
Q Consensus        19 ~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~------~~~v~~lDlD   74 (376)
                      ++...+.+.+........+..++|+|+.|+||||+++.+++.+...      +..+.++++.
T Consensus        26 ~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~   87 (387)
T 2v1u_A           26 AELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR   87 (387)
T ss_dssp             HHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence            3455555544321111236689999999999999999999998765      4556666653

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.64  E-value=0.0013  Score=59.98  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=23.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +.+|.|+|+.||||||+++.|+.++
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            5799999999999999999999876

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.63  E-value=0.0014  Score=57.51  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|..+.|+|+.||||||+++.|+..+
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            46789999999999999999998863

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=96.63  E-value=0.0018  Score=66.74  Aligned_cols=39  Identities=33%  Similarity=0.444  Sum_probs=35.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      +..|+++|..||||||+++.|..++-..|..+.++|.|.
T Consensus       372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~  410 (546)
T 2gks_A          372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV  410 (546)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred             ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence            568999999999999999999999888888999999873

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.62  E-value=0.0063  Score=58.18  Aligned_cols=97  Identities=14%  Similarity=0.176  Sum_probs=58.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEeccc-CCCCCCCCCCCCCceeEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDT-LTPDLTIPCLKTPKRCYFFGDV  115 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~-~~~~~~~~~~~~p~~~~f~G~~  115 (376)
                      ++.|+|+||+|||||||++.|+..+     ..-++++|--|--.+.+      +-+. |.++-   .-.  ...||++..
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds~qvY~~~~------igTakp~~~E---~~~--v~hhlid~~   73 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL-----PVELISVDSALIYKGMD------IGTAKPNAEE---LLA--APHRLLDIR   73 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEECCTTTTBTTCC------TTTTCCCHHH---HHH--SCEETSSCB
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC-----CCcEEeccccccccccc------ccCCCCCHHH---HcC--CCEEEeccC
Confidence            5688999999999999999999875     45678888666432110      0011 11000   000  125788888


Q ss_pred             CCCC--ChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCC
Q 017141          116 SSKR--DPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPG  161 (376)
Q Consensus       116 sp~~--~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~G  161 (376)
                      +|..  +...|...+.+.++.+.++            ...|+||=-.|
T Consensus        74 ~~~e~~s~~~f~~~a~~~i~~i~~~------------g~~pilVGGTg  109 (316)
T 3foz_A           74 DPSQAYSAADFRRDALAEMADITAA------------GRIPLLVGGTM  109 (316)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHHHHHT------------TCEEEEEESCH
T ss_pred             CccccccHHHHHHHHHHHHHHHHhC------------CCcEEEEcCcH
Confidence            8865  4556776666655555443            45677765444

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.62  E-value=0.00094  Score=59.16  Aligned_cols=26  Identities=23%  Similarity=0.535  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+..|+|+|+.||||||+++.|+..+
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            47789999999999999999998875

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=96.61  E-value=0.0018  Score=62.49  Aligned_cols=40  Identities=33%  Similarity=0.330  Sum_probs=34.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      ..+++.|--|+||||++..|+-.+.+.|++|.++|+|+..
T Consensus        17 ~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~   56 (334)
T 3iqw_A           17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH   56 (334)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence            4555566669999999999999999999999999999754

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.60  E-value=0.0011  Score=61.54  Aligned_cols=33  Identities=24%  Similarity=0.449  Sum_probs=28.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +.+|.|+|+.||||||+++.|+..+     ...++|.|
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~l-----g~~~~d~d   80 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSL-----GYTFFDCD   80 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHH-----TCEEEEHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhc-----CCcEEeCc
Confidence            5789999999999999999999987     44677766

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.60  E-value=0.001  Score=58.39  Aligned_cols=32  Identities=31%  Similarity=0.515  Sum_probs=27.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +.|.|.|+.||||||+++.|+..+     ...++|.|
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~l-----g~~~~d~d   34 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAAAL-----GVPYLSSG   34 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHH-----TCCEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc-----CCceeccc
Confidence            489999999999999999999876     35667766

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.59  E-value=0.002  Score=61.29  Aligned_cols=37  Identities=14%  Similarity=0.169  Sum_probs=33.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEEcC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYLDT   73 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll-~~~~~v~~lDl   73 (376)
                      +..+++.|++|+|||+|++.+++.+. +.+..|.|+.+
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~  189 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF  189 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence            56899999999999999999999999 88888988765

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.59  E-value=0.0028  Score=57.00  Aligned_cols=40  Identities=15%  Similarity=0.257  Sum_probs=33.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHH-HHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLV-NVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~-N~ll~~~~~v~~lDlD~   75 (376)
                      ++..++|+|++|+||||||..++ |.+.+.+.+|+|+.++-
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~   69 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE   69 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence            46799999999999999998765 55667788999988864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.58  E-value=0.00065  Score=60.09  Aligned_cols=34  Identities=26%  Similarity=0.313  Sum_probs=28.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      .|.|+|+.||||||+++.|+.++-..|..+.++.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~   35 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA   35 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            5899999999999999999999866666666553

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.57  E-value=0.0015  Score=57.29  Aligned_cols=26  Identities=15%  Similarity=0.270  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..|.|+|+.||||||+++.|+..+
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            36789999999999999999998865

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.56  E-value=0.0053  Score=60.86  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=27.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .+..|+|+|+.||||||+++.|+..+     ...++|.|.
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~  291 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDT  291 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccch
Confidence            36789999999999999999998764     345666653

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.52  E-value=0.0012  Score=58.92  Aligned_cols=32  Identities=25%  Similarity=0.436  Sum_probs=26.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|.|+|+.||||||+++.|+. +     ...++|.|
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~-l-----g~~~id~D   35 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD-L-----GINVIDAD   35 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH-T-----TCEEEEHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH-c-----CCEEEEcc
Confidence            46899999999999999999976 2     35678876

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.52  E-value=0.0017  Score=60.72  Aligned_cols=37  Identities=19%  Similarity=0.320  Sum_probs=32.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ..++++|++|+||||++|.+++.+...+..+.++|+.
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~   84 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT   84 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence            4799999999999999999999987766677777764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.52  E-value=0.0011  Score=59.09  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|+|+|+.||||||+++.|+.++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999999976

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=96.52  E-value=0.0025  Score=61.83  Aligned_cols=39  Identities=28%  Similarity=0.318  Sum_probs=34.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHH--HcCCcEEEEcCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLL--QRYKKVAYLDTDVG   76 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll--~~~~~v~~lDlD~G   76 (376)
                      ..+++.|.-|+||||++..|+-.+.  +.|++|.++|+|+.
T Consensus        19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~   59 (348)
T 3io3_A           19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA   59 (348)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence            5666677779999999999999999  89999999999974

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.51  E-value=0.0014  Score=58.00  Aligned_cols=26  Identities=23%  Similarity=0.405  Sum_probs=22.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+.|+||.|||||||++.|+...
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            35689999999999999999998864

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.51  E-value=0.0014  Score=60.47  Aligned_cols=26  Identities=27%  Similarity=0.468  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+.+|.|+|+.||||||+++.|+..+
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            46799999999999999999999765

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=96.51  E-value=0.0018  Score=67.06  Aligned_cols=40  Identities=30%  Similarity=0.318  Sum_probs=35.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcC-CcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRY-KKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~-~~v~~lDlD~   75 (376)
                      .+..|+++|..||||||+++.|..++-..| ..+.++|.|.
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~  435 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT  435 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence            467899999999999999999999988777 7888998773

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.51  E-value=0.0013  Score=57.27  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=20.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+.++|+.||||||++|.|+.
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            4689999999999999999976

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.50  E-value=0.00091  Score=59.09  Aligned_cols=32  Identities=34%  Similarity=0.438  Sum_probs=25.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      ..|.|+|+.||||||+++.|+. +   |  ..++|.|-
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-l---g--~~~id~d~   34 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-L---G--VPLVDADV   34 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-T---T--CCEEEHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-C---C--CcccchHH
Confidence            3689999999999999999987 2   3  45677763

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.49  E-value=0.0035  Score=62.37  Aligned_cols=65  Identities=17%  Similarity=0.240  Sum_probs=45.4

Q ss_pred             CCccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCc
Q 017141           13 PAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPG   84 (376)
Q Consensus        13 ~~~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG   84 (376)
                      ..+.++.+-..+++.+..    .++..++|+|++||||||+.+.|++.+-....++.+++-++   ++..++
T Consensus       147 ~~Lg~~~~~~~~L~~l~~----~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i---e~~~~~  211 (418)
T 1p9r_A          147 HSLGMTAHNHDNFRRLIK----RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI---EFDIDG  211 (418)
T ss_dssp             GGSCCCHHHHHHHHHHHT----SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC---CSCCSS
T ss_pred             HHcCCCHHHHHHHHHHHH----hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc---hhccCC
Confidence            345566655556666632    23568999999999999999999998755556777777444   344444

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.48  E-value=0.0018  Score=56.49  Aligned_cols=23  Identities=30%  Similarity=0.379  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .|.|+|+.||||||+++.|+.++
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            68999999999999999999987

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.47  E-value=0.0033  Score=60.49  Aligned_cols=37  Identities=24%  Similarity=0.260  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHc--------CCcEEEEcC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQR--------YKKVAYLDT   73 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~--------~~~v~~lDl   73 (376)
                      +..++|.|+.|+||||+++.+++.+.+.        +..+.++++
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~   89 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC   89 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence            5689999999999999999999998765        566666665

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.47  E-value=0.003  Score=58.70  Aligned_cols=27  Identities=11%  Similarity=0.250  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      .+..++|+|+.|+|||||++.++..+.
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            467999999999999999999998543

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=96.47  E-value=0.0027  Score=56.54  Aligned_cols=35  Identities=23%  Similarity=0.194  Sum_probs=31.9

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      ++|+|+|.| |+||||++-.|+..+.++|++|.++|
T Consensus         2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d   37 (224)
T 1byi_A            2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence            468999987 89999999999999999999999975

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.47  E-value=0.0019  Score=56.54  Aligned_cols=23  Identities=35%  Similarity=0.525  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.|+|++|||||||++.|+..+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999999987

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.46  E-value=0.0015  Score=57.63  Aligned_cols=32  Identities=22%  Similarity=0.417  Sum_probs=27.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      ++|+|+.+|||||||..|+..    +.+++|++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~   33 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD----APQVLYIATSQ   33 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS----CSSEEEEECCC
T ss_pred             EEEECCCCCcHHHHHHHHHhc----CCCeEEEecCC
Confidence            799999999999999998754    66788888753

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.46  E-value=0.0026  Score=60.73  Aligned_cols=40  Identities=30%  Similarity=0.366  Sum_probs=29.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHHHc-C-CcEEEEcCC
Q 017141           35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQR-Y-KKVAYLDTD   74 (376)
Q Consensus        35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~-~~v~~lDlD   74 (376)
                      ..+..|.|+|+.|||||||++.|+..+-.. | .++.++-.|
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd  129 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD  129 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence            357799999999999999999998876432 2 234454444

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.45  E-value=0.0035  Score=60.28  Aligned_cols=37  Identities=24%  Similarity=0.350  Sum_probs=31.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD   74 (376)
                      +.++|+|+.|+||||+++.+++.+... +..+.++++.
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~   82 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF   82 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc
Confidence            389999999999999999999987665 4677777764

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.44  E-value=0.0012  Score=56.77  Aligned_cols=25  Identities=36%  Similarity=0.495  Sum_probs=18.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +..|+|+|..||||||+++.|+.++
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhc
Confidence            5689999999999999999998875

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.42  E-value=0.0021  Score=57.25  Aligned_cols=26  Identities=15%  Similarity=0.204  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..|.|+||.||||||+++.|+..+
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            47789999999999999999998753

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.40  E-value=0.0022  Score=62.08  Aligned_cols=35  Identities=23%  Similarity=0.272  Sum_probs=30.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      +.|.|+|+.|||||||++.|+..+     .+.++++|--|
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l-----~~~iis~Ds~q   42 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKF-----NGEIISGDSMQ   42 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT-----TEEEEECCSST
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHc-----CCceecccccc
Confidence            479999999999999999999876     47889998654

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.40  E-value=0.0027  Score=64.75  Aligned_cols=59  Identities=10%  Similarity=0.056  Sum_probs=42.3

Q ss_pred             ccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH-c-CCcEEEEcCCC
Q 017141           15 IYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ-R-YKKVAYLDTDV   75 (376)
Q Consensus        15 ~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~-~-~~~v~~lDlD~   75 (376)
                      ..-|+-|..+.+...  .....+..|.+.|..||||||++|.|+.+|-. . ++.+.|+|.|-
T Consensus       375 f~rpeV~~vLr~~~~--~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          375 FSYPEVVKILRESNP--PRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             TSCHHHHHHHHHHSC--CGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             ccChhhHHHHHHhcc--cccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            333445555555332  11124678999999999999999999999864 4 46788999986

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.40  E-value=0.0021  Score=58.26  Aligned_cols=34  Identities=26%  Similarity=0.366  Sum_probs=28.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+.+|.|+|+.||||||+++.|+..+     ...++|.|
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~~l-----g~~~~d~d   48 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAKDF-----GFTYLDTG   48 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc-----CCceecCC
Confidence            46799999999999999999999876     35677765

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.40  E-value=0.004  Score=54.69  Aligned_cols=36  Identities=31%  Similarity=0.294  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      +..++++|+.|+||||++..++.++...+.+|.++-
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~   38 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK   38 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            568999999999999999777777777888888763

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.37  E-value=0.0036  Score=61.20  Aligned_cols=39  Identities=13%  Similarity=0.255  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD   74 (376)
                      ++..++|+|++||||||+.+.|++.+-.. ..++.+++-+
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~  174 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP  174 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc
Confidence            46789999999999999999999987665 5677777743

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.37  E-value=0.0024  Score=61.37  Aligned_cols=35  Identities=26%  Similarity=0.484  Sum_probs=30.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      +.|+|+|+.||||||+++.|+..+     ...++|+|--|
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds~q   40 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL-----PCELISVDSAL   40 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECTTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccchh
Confidence            579999999999999999999875     47789998665

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.35  E-value=0.0021  Score=57.94  Aligned_cols=23  Identities=22%  Similarity=0.260  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .|+|+|+.||||||+++.|+.++
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999999986

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.34  E-value=0.0042  Score=56.57  Aligned_cols=36  Identities=25%  Similarity=0.079  Sum_probs=33.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL   71 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l   71 (376)
                      ++..++++|+.|+||||++..+++++...|.+|+++
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~   46 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF   46 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence            467899999999999999999999999999999998

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.34  E-value=0.0028  Score=57.41  Aligned_cols=26  Identities=27%  Similarity=0.451  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+++|+|+||+||||+|.|+.|+.++
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            46788899999999999999999986

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.33  E-value=0.0042  Score=58.07  Aligned_cols=30  Identities=23%  Similarity=0.254  Sum_probs=26.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRY   65 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~   65 (376)
                      .+..++++|++|+||||+++.+++.+-..+
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~   95 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLG   95 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            355799999999999999999999987644

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.33  E-value=0.002  Score=60.49  Aligned_cols=33  Identities=24%  Similarity=0.316  Sum_probs=26.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      +..|.|+|+.||||||+++.|+. +   |  ..++|+|.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~-l---g--~~~id~D~  107 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN-L---G--AYIIDSDH  107 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH-H---T--CEEEEHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH-C---C--CcEEehhH
Confidence            45799999999999999999994 2   3  45778763

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.32  E-value=0.0042  Score=62.05  Aligned_cols=37  Identities=27%  Similarity=0.376  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEcC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDT   73 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~lDl   73 (376)
                      +..+++.|+.|+|||||++.+++++...  +.++.++++
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~  168 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS  168 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence            4679999999999999999999999876  556666544

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.31  E-value=0.0044  Score=59.01  Aligned_cols=39  Identities=15%  Similarity=0.187  Sum_probs=35.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ++..++|+|++|+|||||+..++..+..++.+|+|+.+.
T Consensus        67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE  105 (315)
T 3bh0_A           67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  105 (315)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence            577999999999999999999998888778888888876

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.30  E-value=0.0048  Score=58.08  Aligned_cols=57  Identities=21%  Similarity=0.227  Sum_probs=37.3

Q ss_pred             CCccCChhHHHHH-HHhhcc----CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           13 PAIYIPREWSDAA-DSIAYD----SNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        13 ~~~~ip~~W~~~~-~~i~~~----~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      ..+++|+.+.+.+ ..+..+    .....+..+++.||+|+|||++++.+++.+   +..++.++
T Consensus         7 ~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~   68 (293)
T 3t15_A            7 DGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMS   68 (293)
T ss_dssp             TTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEE
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEe
Confidence            4566777665543 233322    112234578888999999999999999988   44555444

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=96.29  E-value=0.0028  Score=66.18  Aligned_cols=39  Identities=28%  Similarity=0.243  Sum_probs=34.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+..|+++|..||||||+++.|..++.+.|..++.+|.|
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD   89 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD   89 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence            366899999999999999999999998888888888755

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.28  E-value=0.004  Score=60.91  Aligned_cols=38  Identities=16%  Similarity=0.113  Sum_probs=33.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+.++|+|+.|+||||+++.|+..+...+.++.++|-+
T Consensus        35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~   72 (392)
T 4ag6_A           35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE   72 (392)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46799999999999999999999998888899888654

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.24  E-value=0.0036  Score=60.03  Aligned_cols=29  Identities=14%  Similarity=0.288  Sum_probs=26.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR   64 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~   64 (376)
                      .++.++|.|++|+|||++++.+++.+-+.
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~   72 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDELITS   72 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            47899999999999999999999998653

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.23  E-value=0.0031  Score=60.26  Aligned_cols=40  Identities=23%  Similarity=0.273  Sum_probs=33.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHc------CCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR------YKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~------~~~v~~lDlD~   75 (376)
                      .+..++|+|+.|+||||||..++..+...      +.+|+|+|++-
T Consensus       106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            46799999999999999999999876544      67899998874

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.23  E-value=0.0058  Score=55.81  Aligned_cols=25  Identities=20%  Similarity=0.395  Sum_probs=22.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +.-++++|++|+||||++|.+++.+
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~   69 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEA   69 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHc
Confidence            4569999999999999999999975

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.22  E-value=0.0024  Score=55.09  Aligned_cols=22  Identities=23%  Similarity=0.514  Sum_probs=19.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHL   57 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L   57 (376)
                      +|..+.++|++|||||||+|.+
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH
Confidence            3678999999999999999983

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.22  E-value=0.0048  Score=56.02  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=28.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      .+..|.|.|+.||||||+++.|++++-. +..+..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~   58 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM   58 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence            4778999999999999999999999865 555544

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.22  E-value=0.0024  Score=59.81  Aligned_cols=33  Identities=21%  Similarity=0.384  Sum_probs=26.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ..|+|+|+.||||||+++.|+..+    ....++|.|
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D   35 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKN----PGFYNINRD   35 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhC----CCcEEeccc
Confidence            479999999999999999998853    245677766

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.21  E-value=0.003  Score=56.01  Aligned_cols=26  Identities=23%  Similarity=0.368  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+.|+|+.|||||||+|.|+..+
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            36789999999999999999999865

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.20  E-value=0.0029  Score=58.01  Aligned_cols=25  Identities=28%  Similarity=0.430  Sum_probs=23.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +..|.|.|+.||||||+++.|+..+
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999999876

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.20  E-value=0.0028  Score=59.27  Aligned_cols=35  Identities=17%  Similarity=0.179  Sum_probs=22.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      .+++|+|+.|+|||||.+.|++...-....+.+-+
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g   37 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNRE   37 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC----------
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCC
Confidence            46899999999999999999998754444454433

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.17  E-value=0.0064  Score=55.23  Aligned_cols=26  Identities=27%  Similarity=0.512  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+..+++.|++|+||||+++.+++.+
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            35679999999999999999999976

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.15  E-value=0.0031  Score=54.19  Aligned_cols=26  Identities=23%  Similarity=0.479  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+.++|+.|+|||||+|.|+..+
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            46789999999999999999999876

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.14  E-value=0.0047  Score=59.34  Aligned_cols=38  Identities=13%  Similarity=0.329  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~lDlD   74 (376)
                      .+ +++|.|+.|+||||||..++..+.+.  +.+|+|+|..
T Consensus        28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E   67 (333)
T 3io5_A           28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE   67 (333)
T ss_dssp             SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred             CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence            35 89999999999999999998888876  7899999973

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.13  E-value=0.0038  Score=60.29  Aligned_cols=40  Identities=25%  Similarity=0.250  Sum_probs=33.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHH------cCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ------RYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~------~~~~v~~lDlD~   75 (376)
                      .+..++|+|+.|+||||||..++.....      .+.+|+|+|++-
T Consensus       121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            4678999999999999999999887543      467899999864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.12  E-value=0.004  Score=55.07  Aligned_cols=28  Identities=29%  Similarity=0.349  Sum_probs=24.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRY   65 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~   65 (376)
                      .++.|+|+.|+|||||++.|+..+-..|
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~~~G   29 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLKSSG   29 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcccCC
Confidence            4689999999999999999999887444

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.11  E-value=0.0031  Score=56.75  Aligned_cols=26  Identities=31%  Similarity=0.475  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+.|+|+.|||||||++.|+...
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            46789999999999999999999854

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.11  E-value=0.0031  Score=64.99  Aligned_cols=39  Identities=31%  Similarity=0.423  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcC-CcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRY-KKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~-~~v~~lDlD   74 (376)
                      ++..|.++|+.||||||++|.|+..+-..+ ..+.++|.|
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD  407 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD  407 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence            467899999999999999999999876444 467788887

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.11  E-value=0.0054  Score=57.06  Aligned_cols=34  Identities=21%  Similarity=0.386  Sum_probs=27.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      +..+++.|++|+||||++|.+++.+   +.....+++
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~   83 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA   83 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEG
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcc
Confidence            4679999999999999999999987   334444443

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.08  E-value=0.0041  Score=56.27  Aligned_cols=27  Identities=11%  Similarity=0.306  Sum_probs=23.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           35 SPPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        35 ~~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+|..+.|+||.|||||||++.|+...
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            357899999999999999999998864

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.07  E-value=0.0079  Score=53.32  Aligned_cols=37  Identities=14%  Similarity=0.069  Sum_probs=34.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      .+...+++|+.|+||||.+..+++++...+.+|+++-
T Consensus         7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k   43 (191)
T 1xx6_A            7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK   43 (191)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            4679999999999999999999999999999999985

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.05  E-value=0.0033  Score=60.02  Aligned_cols=40  Identities=28%  Similarity=0.472  Sum_probs=34.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      -+.++|+|+.|||||||.+.|+...  .+.+++++.-|-|.=
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~G~i   43 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEFGEV   43 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSCCSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEecCccc
Confidence            4689999999999999999998753  678999999887753

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.01  E-value=0.0039  Score=60.39  Aligned_cols=40  Identities=23%  Similarity=0.335  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHH---c---CCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ---R---YKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~---~---~~~v~~lDlD~   75 (376)
                      .+..+.|+|+.|||||||++.|+..+..   .   +.+|+|+|...
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~  175 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN  175 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence            4779999999999999999999987532   2   35788998753

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.00  E-value=0.007  Score=54.48  Aligned_cols=35  Identities=23%  Similarity=0.192  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL   71 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l   71 (376)
                      +..|.|.|+.||||||.++.|++++-..|..|...
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~   40 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT   40 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence            67899999999999999999999998888877654

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.98  E-value=0.0031  Score=56.02  Aligned_cols=33  Identities=24%  Similarity=0.405  Sum_probs=27.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|.|+|+.||||||+++.|+..+     ...++|.|
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~-----g~~~~~~d   35 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL-----SMIYVDTG   35 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT-----TCEEEEHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc-----CCceecCC
Confidence            4579999999999999999998865     35677876

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.97  E-value=0.0049  Score=58.74  Aligned_cols=26  Identities=23%  Similarity=0.361  Sum_probs=24.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.++.|+|+.|||||||++.|+..+
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            57899999999999999999999987

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.95  E-value=0.0055  Score=62.63  Aligned_cols=38  Identities=21%  Similarity=0.242  Sum_probs=32.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|+++|..||||||+++.|+.++--.+..+.+++.|
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D   72 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVG   72 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEeccc
Confidence            45799999999999999999999986667777777776

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=95.95  E-value=0.0077  Score=53.44  Aligned_cols=33  Identities=30%  Similarity=0.249  Sum_probs=29.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      |.|-|.-||||||.++.|.++|-.+|.+|.+..
T Consensus         3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr   35 (197)
T 3hjn_A            3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR   35 (197)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            677899999999999999999999998887653

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.94  E-value=0.0013  Score=55.12  Aligned_cols=44  Identities=9%  Similarity=0.033  Sum_probs=31.9

Q ss_pred             cCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           16 YIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        16 ~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .-.+.|.++.+.+..-..  .+..|++.|++|+|||+++|.+.+..
T Consensus         8 G~s~~~~~l~~~~~~~~~--~~~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A            8 GNSAAIQEMNREVEAAAK--RTSPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             CCCHHHHHHHHHHHHHHT--CSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             eCCHHHHHHHHHHHHHhC--CCCcEEEECCCCccHHHHHHHHHHhC
Confidence            345677777776643111  13459999999999999999988764

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=95.93  E-value=0.0049  Score=58.43  Aligned_cols=56  Identities=16%  Similarity=0.176  Sum_probs=39.9

Q ss_pred             CChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        17 ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      -.+.+.++.+.+..-..  ....|+|.|++|+|||+++|.+.+..-+.+.....+||.
T Consensus         7 ~s~~~~~~~~~~~~~a~--~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~   62 (304)
T 1ojl_A            7 SSPAMQHLLNEIAMVAP--SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCA   62 (304)
T ss_dssp             CSHHHHHHHHHHHHHCS--TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECS
T ss_pred             CCHHHHHHHHHHHHHhC--CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCC
Confidence            34567777776643221  245699999999999999999999765555555666663

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=95.93  E-value=0.0053  Score=54.82  Aligned_cols=25  Identities=16%  Similarity=0.304  Sum_probs=22.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      .+..|.|+||.|+|||||++.|+..
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhh
Confidence            3678999999999999999998865

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.93  E-value=0.0044  Score=51.41  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ++|+|+|..|+|||||.+.|++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            58999999999999998888753

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.91  E-value=0.004  Score=56.89  Aligned_cols=26  Identities=19%  Similarity=0.171  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+.|+|+.|||||||.|.|+..+
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            47799999999999999999988654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=95.88  E-value=0.0032  Score=56.74  Aligned_cols=26  Identities=27%  Similarity=0.427  Sum_probs=17.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHH-HHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLV-NVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~-N~l   61 (376)
                      ++..+.|+|+.||||||+++.|+ ..+
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            36789999999999999999998 753

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.88  E-value=0.0099  Score=59.49  Aligned_cols=40  Identities=15%  Similarity=0.323  Sum_probs=35.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHH-cCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ-RYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~-~~~~v~~lDlD~   75 (376)
                      ++..++|.|++|+|||||+..++..+.. .|.+|+|+++..
T Consensus       202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~  242 (454)
T 2r6a_A          202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM  242 (454)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            4779999999999999999999998876 577899998763

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=95.86  E-value=0.0042  Score=56.13  Aligned_cols=32  Identities=28%  Similarity=0.433  Sum_probs=26.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL   71 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l   71 (376)
                      +|..|.|.|+.||||||+++.|+..    +..+.+.
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~   50 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLL   50 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc----cCCeEEE
Confidence            4678999999999999999999886    4455554

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.85  E-value=0.011  Score=57.25  Aligned_cols=57  Identities=19%  Similarity=0.281  Sum_probs=43.2

Q ss_pred             CChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        17 ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      +|-.|..+ +.+.. + -.++-.++|.|++|+|||||+..++..+...+.+|+|+.+...
T Consensus        29 i~TG~~~L-D~~~g-G-l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms   85 (338)
T 4a1f_A           29 IPTGFVQL-DNYTS-G-FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS   85 (338)
T ss_dssp             BCCSCHHH-HHHHC-S-BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             ccCCChHH-HHHhc-C-CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence            44445433 44432 2 2357799999999999999999999999888999999988643

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.84  E-value=0.012  Score=50.42  Aligned_cols=26  Identities=19%  Similarity=0.080  Sum_probs=21.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      ..+|+|+|..|+|||||.++|.+...
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            46899999999999999987776543

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.82  E-value=0.0078  Score=55.60  Aligned_cols=26  Identities=23%  Similarity=0.450  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+..+++.|++|+||||+++.+++.+
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            35679999999999999999999875

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.81  E-value=0.0034  Score=60.09  Aligned_cols=26  Identities=19%  Similarity=0.249  Sum_probs=23.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQR   64 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~   64 (376)
                      .+++.|+.|+||||+++.+++.+...
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~l~~~   73 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAREIYGK   73 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCC
Confidence            39999999999999999999998643

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.80  E-value=0.005  Score=56.00  Aligned_cols=41  Identities=24%  Similarity=0.174  Sum_probs=33.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHH-cCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ-RYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~-~~~~v~~lDlD~G   76 (376)
                      .+..|.|.|..||||||+++.|.+++-. .|.+|.++--.||
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~   61 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG   61 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence            4778999999999999999999999988 8877766433444

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.80  E-value=0.0061  Score=54.62  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|+++||+||||+|.|+.|+.++
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999876

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.79  E-value=0.0088  Score=54.51  Aligned_cols=36  Identities=22%  Similarity=0.231  Sum_probs=28.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHc----CCcEEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR----YKKVAYL   71 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~----~~~v~~l   71 (376)
                      .+..|.|.|+.||||||.++.|++++-..    |..|.++
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~   63 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT   63 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence            47789999999999999999999999877    7777654

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=95.78  E-value=0.018  Score=59.51  Aligned_cols=55  Identities=22%  Similarity=0.219  Sum_probs=40.8

Q ss_pred             hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        19 ~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      +...+.++.+....    ...+++.|..|+||||++..|+-.+.+.|.+|.++|+||..
T Consensus       313 ~~l~~~~~~~~~~~----~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~  367 (589)
T 1ihu_A          313 PSLSALVDDIARNE----HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA  367 (589)
T ss_dssp             CCHHHHHHHHHTTS----CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred             chhhhhhhhhhccC----CeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcc
Confidence            45556666553211    23455566669999999999999999999999999999863

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.78  E-value=0.012  Score=51.59  Aligned_cols=27  Identities=26%  Similarity=0.336  Sum_probs=23.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      +..++|.|+.|+||||+++.+++.+..
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            457999999999999999999998753

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.77  E-value=0.0065  Score=60.08  Aligned_cols=39  Identities=23%  Similarity=0.284  Sum_probs=30.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHH------cCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ------RYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~------~~~~v~~lDlD   74 (376)
                      .+..+.|+|+.|+|||||++.|+-..+.      .+.+++|+|..
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E  221 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE  221 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence            4779999999999999999988644432      24678898875

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.77  E-value=0.012  Score=54.00  Aligned_cols=35  Identities=23%  Similarity=0.232  Sum_probs=30.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCc-EEEE
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKK-VAYL   71 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~-v~~l   71 (376)
                      +..|.|.|+.||||||+++.|+.++-..|.. +.++
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~   62 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT   62 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence            6789999999999999999999999888777 5544

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.76  E-value=0.0047  Score=55.95  Aligned_cols=26  Identities=27%  Similarity=0.172  Sum_probs=22.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|..+.|+|+.|||||||.|.|+..+
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            46789999999999999999988754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.75  E-value=0.006  Score=50.85  Aligned_cols=23  Identities=13%  Similarity=0.270  Sum_probs=20.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||++.|++
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~   27 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCK   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            46899999999999999998875

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.75  E-value=0.01  Score=60.43  Aligned_cols=50  Identities=18%  Similarity=0.258  Sum_probs=36.0

Q ss_pred             HHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHH-HHHHHHcCCcEEEEcCC
Q 017141           24 AADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHL-VNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        24 ~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L-~N~ll~~~~~v~~lDlD   74 (376)
                      +++.+...+ -.++..++|+|++|||||||++.+ ++-+++.+....+++..
T Consensus        27 ~Ld~i~~G~-i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~   77 (525)
T 1tf7_A           27 GFDDISHGG-LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE   77 (525)
T ss_dssp             THHHHTTSS-EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             hHHHhcCCC-CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            455554311 124789999999999999999997 47777656667777754

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.73  E-value=0.0053  Score=56.16  Aligned_cols=26  Identities=19%  Similarity=0.470  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|..+.|+|+.|||||||.|.|+..+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47799999999999999999998754

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.73  E-value=0.007  Score=57.71  Aligned_cols=26  Identities=23%  Similarity=0.416  Sum_probs=23.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      +.++++|+.|+||||+++.|++.+..
T Consensus        37 ~~~ll~Gp~G~GKTtl~~~la~~l~~   62 (354)
T 1sxj_E           37 PHLLLYGPNGTGKKTRCMALLESIFG   62 (354)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHcC
Confidence            34999999999999999999998754

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.72  E-value=0.0097  Score=55.36  Aligned_cols=26  Identities=23%  Similarity=0.354  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+++.|++|+||||++|.+++.+
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            35689999999999999999999875

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=95.70  E-value=0.0075  Score=53.79  Aligned_cols=38  Identities=16%  Similarity=0.211  Sum_probs=30.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHH-----HcC-CcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLL-----QRY-KKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll-----~~~-~~v~~lDlD   74 (376)
                      ...++|+|++|||||++|..++..+.     +.| +.+++.++|
T Consensus         5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~   48 (199)
T 2r2a_A            5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK   48 (199)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence            45899999999999999988765553     566 777788776

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=95.70  E-value=0.0055  Score=57.13  Aligned_cols=27  Identities=26%  Similarity=0.359  Sum_probs=23.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQR   64 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~   64 (376)
                      +.+++.|+.|+||||+++.+++.+...
T Consensus        39 ~~~ll~G~~G~GKt~la~~l~~~l~~~   65 (319)
T 2chq_A           39 PHLLFSGPPGTGKTATAIALARDLFGE   65 (319)
T ss_dssp             CCEEEESSSSSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEECcCCcCHHHHHHHHHHHhcCC
Confidence            349999999999999999999998643

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=95.68  E-value=0.012  Score=58.84  Aligned_cols=41  Identities=17%  Similarity=0.245  Sum_probs=36.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      ++-.++|.|++|+|||||+..++..++..|.+|+|+.+.-.
T Consensus       196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms  236 (444)
T 3bgw_A          196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG  236 (444)
T ss_dssp             SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence            46799999999999999999999999888889999988744

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=95.68  E-value=0.014  Score=52.59  Aligned_cols=34  Identities=26%  Similarity=0.261  Sum_probs=29.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCC-cEEE
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYK-KVAY   70 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~-~v~~   70 (376)
                      |.-|.+.|+.||||||.++.|..++-..|. .|.+
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~   37 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF   37 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCccee
Confidence            568999999999999999999999988776 5544

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.66  E-value=0.0078  Score=56.20  Aligned_cols=43  Identities=26%  Similarity=0.236  Sum_probs=30.8

Q ss_pred             ChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141           18 PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR   64 (376)
Q Consensus        18 p~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~   64 (376)
                      .+.+..+.+.+..+.    .+.+++.|+.|+||||+++.+++.+...
T Consensus        27 ~~~~~~l~~~l~~~~----~~~~ll~G~~G~GKt~la~~l~~~l~~~   69 (323)
T 1sxj_B           27 KETIDRLQQIAKDGN----MPHMIISGMPGIGKTTSVHCLAHELLGR   69 (323)
T ss_dssp             THHHHHHHHHHHSCC----CCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHcCC----CCeEEEECcCCCCHHHHHHHHHHHhcCC
Confidence            344555555554321    2349999999999999999999998643

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.65  E-value=0.0033  Score=58.64  Aligned_cols=36  Identities=25%  Similarity=0.302  Sum_probs=27.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL   71 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l   71 (376)
                      +|..+.|+|+.|||||||.|.|+..+--...++.+-
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~   71 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLL   71 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEET
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC
Confidence            477999999999999999999988653333455553

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.64  E-value=0.0089  Score=56.28  Aligned_cols=26  Identities=27%  Similarity=0.552  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+..|+++|++|+||||++|.+++.+
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHh
Confidence            35679999999999999999999975

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.62  E-value=0.0067  Score=52.77  Aligned_cols=23  Identities=13%  Similarity=0.219  Sum_probs=20.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      .+|.|+|+.|||||||.+.|++.
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            58999999999999999998864

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.61  E-value=0.0072  Score=50.27  Aligned_cols=22  Identities=18%  Similarity=0.350  Sum_probs=19.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|..|+|||||.+.|++
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            5899999999999999888875

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.60  E-value=0.0075  Score=49.96  Aligned_cols=22  Identities=18%  Similarity=0.366  Sum_probs=19.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|+.|+|||||.+.|++
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            5899999999999999877765

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=95.60  E-value=0.012  Score=55.04  Aligned_cols=28  Identities=29%  Similarity=0.364  Sum_probs=24.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQR   64 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~   64 (376)
                      .+.+++.|+.|+||||+++.+++.+...
T Consensus        46 ~~~~ll~G~~G~GKT~la~~l~~~l~~~   73 (327)
T 1iqp_A           46 MPHLLFAGPPGVGKTTAALALARELFGE   73 (327)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHHGG
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhcCC
Confidence            3459999999999999999999997644

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.59  E-value=0.0054  Score=55.33  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=22.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|..+.|+|+.|||||||.|.|+..+
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            36789999999999999999998754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.58  E-value=0.0076  Score=50.28  Aligned_cols=24  Identities=17%  Similarity=0.242  Sum_probs=20.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||.+.|++.
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            358999999999999999888653

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.57  E-value=0.0064  Score=55.23  Aligned_cols=26  Identities=19%  Similarity=0.341  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|..+.|+|+.|||||||.|.|+..+
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47799999999999999999998754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.56  E-value=0.0079  Score=56.01  Aligned_cols=25  Identities=32%  Similarity=0.486  Sum_probs=22.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +|..+.|+|+.|||||||.|.|+..
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4779999999999999999999885

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.56  E-value=0.013  Score=59.84  Aligned_cols=38  Identities=18%  Similarity=0.237  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      ++..++|.|+.|+|||||++.++..+...|.++.|+..
T Consensus       280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~  317 (525)
T 1tf7_A          280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAY  317 (525)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence            47799999999999999999999988777777766654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.55  E-value=0.0065  Score=56.99  Aligned_cols=35  Identities=17%  Similarity=0.348  Sum_probs=26.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|||||||.|.|+..+--...++.+
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~   67 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF   67 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEE
Confidence            47799999999999999999998754322234444

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.55  E-value=0.0079  Score=49.88  Aligned_cols=23  Identities=13%  Similarity=0.316  Sum_probs=20.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~   26 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999887774

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.55  E-value=0.0079  Score=50.09  Aligned_cols=23  Identities=17%  Similarity=0.244  Sum_probs=20.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      .+|+|+|+.|+|||||.+.|++.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            57999999999999998887653

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.54  E-value=0.0063  Score=55.78  Aligned_cols=35  Identities=20%  Similarity=0.251  Sum_probs=27.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|||||||.|.|+...--...++.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~   61 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI   61 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence            47799999999999999999998764333345555

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.52  E-value=0.007  Score=56.20  Aligned_cols=26  Identities=27%  Similarity=0.351  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|..+.|+|+.|||||||.|.|+..+
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            47799999999999999999988754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.52  E-value=0.0079  Score=55.37  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=22.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +|..+.|+|+.|||||||.|.|+..
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4679999999999999999999885

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.52  E-value=0.0083  Score=50.65  Aligned_cols=24  Identities=33%  Similarity=0.542  Sum_probs=21.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..++|+|+|..|+|||||.+.|++
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            468999999999999999988865

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=95.51  E-value=0.018  Score=55.65  Aligned_cols=38  Identities=24%  Similarity=0.242  Sum_probs=31.0

Q ss_pred             CCEEEE--EcCCCCcHHHHHHHHHHHHHHc------CCcEEEEcCC
Q 017141           37 PPIAFI--CGAKNCGKTTFSRHLVNVLLQR------YKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV--~G~~~sGKSTl~r~L~N~ll~~------~~~v~~lDlD   74 (376)
                      +..++|  .|+.|+||||+++.+++.+...      +..++++++.
T Consensus        50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (412)
T 1w5s_A           50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF   95 (412)
T ss_dssp             CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred             CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECC
Confidence            457888  8999999999999999987653      4567778764

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.51  E-value=0.0071  Score=56.04  Aligned_cols=35  Identities=23%  Similarity=0.187  Sum_probs=26.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|||||||.|.|+..+--...++.+
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~   74 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV   74 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence            47799999999999999999998754222234444

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.51  E-value=0.0071  Score=56.29  Aligned_cols=26  Identities=27%  Similarity=0.387  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|..+.|+|+.|||||||.|.|+..+
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            47799999999999999999988754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.51  E-value=0.0084  Score=50.11  Aligned_cols=24  Identities=17%  Similarity=0.163  Sum_probs=20.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||.+.|++.
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            468999999999999999877753

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.51  E-value=0.0067  Score=56.10  Aligned_cols=35  Identities=20%  Similarity=0.345  Sum_probs=26.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|||||||.|.|+..+--....+.+
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~   66 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF   66 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            47799999999999999999998764322234444

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.50  E-value=0.0073  Score=54.17  Aligned_cols=44  Identities=25%  Similarity=0.299  Sum_probs=31.7

Q ss_pred             ChhHH--HHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcE
Q 017141           18 PREWS--DAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKV   68 (376)
Q Consensus        18 p~~W~--~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v   68 (376)
                      |+.+.  .+++.+.      ++.++.|+|+.|||||||.|.|+.. --....+
T Consensus         7 pk~~g~~~~l~~i~------~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I   52 (208)
T 3b85_A            7 PKTLGQKHYVDAID------TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV   52 (208)
T ss_dssp             CCSHHHHHHHHHHH------HCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred             cCCHhHHHHHHhcc------CCCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence            44443  3566664      2568999999999999999999987 4333334

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.50  E-value=0.008  Score=52.40  Aligned_cols=23  Identities=13%  Similarity=0.219  Sum_probs=20.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      .+|.|+|+.|+|||||.+.|++.
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            58999999999999999998864

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.50  E-value=0.0068  Score=55.77  Aligned_cols=35  Identities=17%  Similarity=0.275  Sum_probs=26.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|||||||.|.|+..+--...++.+
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i   68 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLI   68 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence            46799999999999999999988764322334444

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.49  E-value=0.0069  Score=55.41  Aligned_cols=35  Identities=23%  Similarity=0.330  Sum_probs=26.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|||||||.|.|+..+--...++.+
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~   65 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF   65 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence            46799999999999999999998754222234444

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.49  E-value=0.0082  Score=49.59  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=19.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|..|+|||||.+.|++
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~   25 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999888775

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=95.49  E-value=0.017  Score=57.59  Aligned_cols=39  Identities=18%  Similarity=0.233  Sum_probs=34.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHH-cCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ-RYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~-~~~~v~~lDlD   74 (376)
                      ++..++|+|++|+|||||+..++..+.. .+.+|+|+++.
T Consensus       199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE  238 (444)
T 2q6t_A          199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE  238 (444)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            5779999999999999999999988876 47889999886

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.48  E-value=0.0081  Score=50.11  Aligned_cols=22  Identities=18%  Similarity=0.317  Sum_probs=19.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|+.|+|||||.+.|++
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            5899999999999999988875

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.48  E-value=0.013  Score=55.84  Aligned_cols=26  Identities=15%  Similarity=0.262  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.-||+.|++|+|||++++.+++.+
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHc
Confidence            45689999999999999999999986

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.46  E-value=0.012  Score=54.20  Aligned_cols=26  Identities=19%  Similarity=0.347  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+..++++|++|+||||+++.+++.+
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~~   88 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEES   88 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            45689999999999999999999974

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.46  E-value=0.0075  Score=55.94  Aligned_cols=26  Identities=19%  Similarity=0.331  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|..+.|+|+.|||||||.|.|+..+
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            47799999999999999999998754

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.46  E-value=0.011  Score=57.17  Aligned_cols=34  Identities=24%  Similarity=0.312  Sum_probs=27.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      ...++++|++|+||||++|.+++.+   +.....+|+
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~  105 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDA  105 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEecc
Confidence            4579999999999999999999986   444455544

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.46  E-value=0.011  Score=59.43  Aligned_cols=64  Identities=14%  Similarity=0.086  Sum_probs=28.9

Q ss_pred             CCCCCCccCChhHHHHHHHhh-----ccC--CCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141            9 ENPSPAIYIPREWSDAADSIA-----YDS--NTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus         9 ~~~~~~~~ip~~W~~~~~~i~-----~~~--~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      ++......++..|....+...     .+.  ....+..|+++|..||||||+++.|+.++-..+.....++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~   74 (469)
T 1bif_A            4 PRELTQNPLKKIFMPYSNGRPALHASQRGVCMTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN   74 (469)
T ss_dssp             ----------------------------------CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ccccccCcccceeccccccccccccccccccCCCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence            455566677788877644321     000  1123458999999999999999999999865554444433

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.45  E-value=0.0065  Score=50.73  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=20.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            46899999999999999988765

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.44  E-value=0.0086  Score=50.50  Aligned_cols=24  Identities=13%  Similarity=0.339  Sum_probs=21.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||.+.|++.
T Consensus         9 ~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            9 THKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            468999999999999999888764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.44  E-value=0.011  Score=50.86  Aligned_cols=25  Identities=32%  Similarity=0.437  Sum_probs=21.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ...+|+|+|+.|+|||||...|++.
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4679999999999999999887763

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.43  E-value=0.0096  Score=51.03  Aligned_cols=24  Identities=17%  Similarity=0.250  Sum_probs=21.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||.+.|++.
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            578999999999999998888763

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=95.43  E-value=0.021  Score=52.90  Aligned_cols=23  Identities=22%  Similarity=0.283  Sum_probs=19.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||...|.+
T Consensus         8 ~~~I~vvG~~g~GKSTLin~L~~   30 (274)
T 3t5d_A            8 EFTLMVVGESGLGKSTLINSLFL   30 (274)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHSS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999887653

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.43  E-value=0.0093  Score=57.06  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=22.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ...++++||+|+|||||+|.+++.+
T Consensus        51 ~~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           51 LDHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHh
Confidence            3569999999999999999999986

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=95.42  E-value=0.009  Score=54.42  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=21.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .-++++|++|+||||++|.+++.+
T Consensus        50 ~g~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           50 KGVLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            349999999999999999999874

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.42  E-value=0.0092  Score=50.23  Aligned_cols=23  Identities=17%  Similarity=0.203  Sum_probs=20.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~   37 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTE   37 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            46899999999999999988876

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.41  E-value=0.0099  Score=49.72  Aligned_cols=24  Identities=29%  Similarity=0.239  Sum_probs=21.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ...+|+|+|..|+|||||.+.|++
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            357999999999999999888765

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.41  E-value=0.0094  Score=50.32  Aligned_cols=24  Identities=29%  Similarity=0.325  Sum_probs=21.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|+.|+|||||.+.|++.
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            568999999999999999887753

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.40  E-value=0.0095  Score=49.60  Aligned_cols=23  Identities=17%  Similarity=0.275  Sum_probs=20.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            35899999999999999988775

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.40  E-value=0.008  Score=55.90  Aligned_cols=35  Identities=17%  Similarity=0.304  Sum_probs=26.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|||||||.|.|+..+--...++.+
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~   66 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLY   66 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence            47799999999999999999988754222234444

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.40  E-value=0.008  Score=56.11  Aligned_cols=35  Identities=26%  Similarity=0.351  Sum_probs=26.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|||||||.|.|+..+--...+|.+
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~   78 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL   78 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence            47799999999999999999998864322234444

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.39  E-value=0.0087  Score=56.83  Aligned_cols=40  Identities=23%  Similarity=0.284  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHH-H-----------cC----CcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLL-Q-----------RY----KKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll-~-----------~~----~~v~~lDlD~   75 (376)
                      .+..++|.|+.|+||||||..++.... .           .|    .+|+|+|++-
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~  152 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEG  152 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCC
Confidence            367899999999999999999987632 2           23    5788887763

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=95.39  E-value=0.013  Score=57.83  Aligned_cols=36  Identities=25%  Similarity=0.339  Sum_probs=32.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      .-++|+|++|||||++.+.++..+++.+..+.++|-
T Consensus        54 ~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dp   89 (437)
T 1e9r_A           54 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP   89 (437)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence            468999999999999999999999999999999875

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.38  E-value=0.008  Score=55.45  Aligned_cols=34  Identities=15%  Similarity=0.356  Sum_probs=26.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|||||||.|.|+..+--. .++.+
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~   58 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQF   58 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEE
Confidence            46789999999999999999998765333 34443

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.37  E-value=0.008  Score=56.43  Aligned_cols=35  Identities=20%  Similarity=0.095  Sum_probs=26.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|||||||.|.|+..+--...++.+
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~   80 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL   80 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEE
Confidence            46799999999999999999998765322334544

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.37  E-value=0.0099  Score=50.12  Aligned_cols=23  Identities=17%  Similarity=0.262  Sum_probs=20.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            46899999999999999888764

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.34  E-value=0.015  Score=55.20  Aligned_cols=26  Identities=15%  Similarity=0.347  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+|+.|++|+|||+++|.+++.+
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            35679999999999999999999985

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.32  E-value=0.01  Score=52.45  Aligned_cols=21  Identities=29%  Similarity=0.464  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 017141           40 AFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      |+|+||.||||||+++.|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999988765

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.30  E-value=0.01  Score=50.54  Aligned_cols=23  Identities=17%  Similarity=0.156  Sum_probs=20.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999888775

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.30  E-value=0.0073  Score=57.30  Aligned_cols=26  Identities=27%  Similarity=0.336  Sum_probs=23.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      +.+++.|++|+||||+++.+++.+..
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~l~~   84 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKELYG   84 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34999999999999999999999763

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.29  E-value=0.011  Score=49.18  Aligned_cols=22  Identities=27%  Similarity=0.243  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +|+|+|..|+|||||.+.|++.
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6999999999999999988763

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.29  E-value=0.011  Score=50.34  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=20.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~   26 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQ   26 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999888875

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.27  E-value=0.015  Score=59.06  Aligned_cols=34  Identities=21%  Similarity=0.180  Sum_probs=28.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      .+.++++|++|+||||+++.+++.+   +..+..+++
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~  110 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNA  110 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeC
Confidence            4689999999999999999999987   566666665

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.27  E-value=0.012  Score=56.77  Aligned_cols=26  Identities=23%  Similarity=0.388  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+..|+++|++|+||||+||.+++.+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            35679999999999999999999987

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.27  E-value=0.0094  Score=51.27  Aligned_cols=25  Identities=32%  Similarity=0.509  Sum_probs=21.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..++|+|+|..|+|||||.+.|++.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3689999999999999999888753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.26  E-value=0.01  Score=49.86  Aligned_cols=22  Identities=18%  Similarity=0.276  Sum_probs=19.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|..|+|||||.+.|++
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            5899999999999999887764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.25  E-value=0.0073  Score=58.72  Aligned_cols=25  Identities=24%  Similarity=0.485  Sum_probs=22.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +..++|+|++|||||||++.|+...
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcC
Confidence            5689999999999999999998864

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.25  E-value=0.0087  Score=51.09  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ++.+|+|+|..|+|||||.+.|++
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~   26 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAG   26 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            367899999999999999988765

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.24  E-value=0.011  Score=50.07  Aligned_cols=23  Identities=13%  Similarity=0.316  Sum_probs=20.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~   40 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMY   40 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Confidence            46899999999999999887775

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.22  E-value=0.0095  Score=55.05  Aligned_cols=26  Identities=27%  Similarity=0.478  Sum_probs=23.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|..+.|+|+.|||||||.|.|+..+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            46789999999999999999988754

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=95.21  E-value=0.017  Score=51.52  Aligned_cols=32  Identities=22%  Similarity=0.246  Sum_probs=26.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL   71 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l   71 (376)
                      =|.|-|.-||||||.++.|.++|. ++.+|.+.
T Consensus         4 FI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~   35 (205)
T 4hlc_A            4 FITFEGPEGSGKTTVINEVYHRLV-KDYDVIMT   35 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEe
Confidence            367889999999999999999984 56666543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.21  E-value=0.012  Score=50.57  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=21.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||++.|++.
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcC
Confidence            358999999999999999988763

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.20  E-value=0.0092  Score=50.13  Aligned_cols=23  Identities=17%  Similarity=0.249  Sum_probs=20.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCccHHHHHHHHhc
Confidence            46899999999999999987764

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=95.20  E-value=0.015  Score=54.57  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=27.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      +..++|+|++|+||||+++.+++.+   +....++++
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~   71 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSG   71 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEec
Confidence            4579999999999999999999976   344555554

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.19  E-value=0.012  Score=50.76  Aligned_cols=23  Identities=17%  Similarity=0.244  Sum_probs=20.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~   47 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTR   47 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhc
Confidence            46899999999999999887776

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.19  E-value=0.012  Score=53.92  Aligned_cols=33  Identities=15%  Similarity=0.302  Sum_probs=24.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      ..+.|+|+.|||||||.|.|+..+--....+.+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~   57 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRL   57 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            689999999999999999998764222234444

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.17  E-value=0.011  Score=49.95  Aligned_cols=24  Identities=17%  Similarity=0.252  Sum_probs=21.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||.+.|++.
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            468999999999999999988754

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.17  E-value=0.017  Score=55.73  Aligned_cols=26  Identities=23%  Similarity=0.431  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+..||+.|++|+||||++|.+++.+
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHc
Confidence            35689999999999999999999875

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.16  E-value=0.014  Score=51.29  Aligned_cols=25  Identities=32%  Similarity=0.437  Sum_probs=21.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..++|+|+|+.|+|||||...|++.
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999999887764

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=95.16  E-value=0.0098  Score=55.47  Aligned_cols=24  Identities=25%  Similarity=0.516  Sum_probs=21.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .-++++||+|+|||||+|.|++.+
T Consensus        45 ~GvlL~Gp~GtGKTtLakala~~~   68 (274)
T 2x8a_A           45 AGVLLAGPPGCGKTLLAKAVANES   68 (274)
T ss_dssp             SEEEEESSTTSCHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHc
Confidence            349999999999999999999863

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.16  E-value=0.012  Score=50.17  Aligned_cols=24  Identities=13%  Similarity=0.225  Sum_probs=20.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||.+.|++.
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            468999999999999999888653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.15  E-value=0.013  Score=49.61  Aligned_cols=23  Identities=17%  Similarity=0.312  Sum_probs=20.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~   34 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVK   34 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHc
Confidence            46899999999999999877764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.14  E-value=0.012  Score=50.43  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .++|+|+|..|+|||||.+.|++
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFN   45 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHc
Confidence            57999999999999999887754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.14  E-value=0.013  Score=49.93  Aligned_cols=23  Identities=13%  Similarity=0.284  Sum_probs=20.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~   40 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQ   40 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999888774

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.14  E-value=0.0072  Score=58.13  Aligned_cols=34  Identities=24%  Similarity=0.277  Sum_probs=30.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      +..++|.|++|+|||||+..+++.   .+.+|.|+++
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~  156 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV  156 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence            457899999999999999999886   5678899998

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.14  E-value=0.009  Score=51.08  Aligned_cols=23  Identities=26%  Similarity=0.271  Sum_probs=20.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|+.|+|||||.+.|++
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999998875

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.13  E-value=0.024  Score=55.49  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+..++|+|+.|+|||||++.|++..
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            46799999999999999999999864

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.13  E-value=0.023  Score=55.31  Aligned_cols=26  Identities=19%  Similarity=0.411  Sum_probs=23.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      .+.|+++|+.|+||||+++.|++.+-
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            45699999999999999999999874

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.12  E-value=0.012  Score=50.41  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=21.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||.+.|++.
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999988764

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=95.11  E-value=0.016  Score=59.13  Aligned_cols=43  Identities=16%  Similarity=0.270  Sum_probs=34.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcC--CcEEEEcCCCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRY--KKVAYLDTDVGQPE   79 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~--~~v~~lDlD~GQ~~   79 (376)
                      ++.++|.|.+||||||+.+.|+-.++.+.  ..+-++-+|++..+
T Consensus       167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~e  211 (512)
T 2ius_A          167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLE  211 (512)
T ss_dssp             SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSG
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhh
Confidence            57899999999999999999998887653  35666667777544

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.11  E-value=0.013  Score=49.49  Aligned_cols=23  Identities=17%  Similarity=0.270  Sum_probs=20.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~   32 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKD   32 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            46899999999999999888765

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.11  E-value=0.013  Score=51.24  Aligned_cols=23  Identities=17%  Similarity=0.265  Sum_probs=20.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||...|++
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            57999999999999999987765

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.10  E-value=0.012  Score=50.69  Aligned_cols=24  Identities=25%  Similarity=0.254  Sum_probs=21.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||.+.|++.
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcC
Confidence            358999999999999999888764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.10  E-value=0.013  Score=49.67  Aligned_cols=23  Identities=17%  Similarity=0.202  Sum_probs=20.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHc
Confidence            45899999999999999988765

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.09  E-value=0.0069  Score=58.20  Aligned_cols=26  Identities=23%  Similarity=0.576  Sum_probs=23.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      +..++|+|++|||||||.+.|+...-
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            56899999999999999999998753

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.08  E-value=0.017  Score=55.74  Aligned_cols=25  Identities=12%  Similarity=0.260  Sum_probs=22.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +.-||+.|++|+||||++|.+++.+
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~  108 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEA  108 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHh
Confidence            4569999999999999999999987

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.08  E-value=0.011  Score=54.78  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=21.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +-++++|++|+|||||++.+++.+
T Consensus        74 ~gvll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           74 KGVLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCcChHHHHHHHHHHHc
Confidence            349999999999999999999875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.04  E-value=0.011  Score=57.39  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=23.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +.++.|+|+.|||||||++.|+..+
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            5799999999999999999999874

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.03  E-value=0.021  Score=53.80  Aligned_cols=36  Identities=28%  Similarity=0.397  Sum_probs=30.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      +.++|.|+.|+|||||++.+++.+   ...+.|+++...
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~~   66 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLRKF   66 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGGGG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEchhh
Confidence            589999999999999999999885   245789988643

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.03  E-value=0.0091  Score=49.77  Aligned_cols=22  Identities=23%  Similarity=0.359  Sum_probs=19.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|..|+|||||.+.|++
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcC
Confidence            5899999999999999987754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.02  E-value=0.014  Score=50.13  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=19.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|..|+|||||.+.|++
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYAD   44 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            5899999999999999988765

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.02  E-value=0.017  Score=48.93  Aligned_cols=23  Identities=17%  Similarity=0.095  Sum_probs=20.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            57999999999999999977765

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.00  E-value=0.014  Score=48.78  Aligned_cols=22  Identities=18%  Similarity=0.311  Sum_probs=19.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|..|+|||||.+.|++
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999988764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=95.00  E-value=0.016  Score=57.42  Aligned_cols=37  Identities=24%  Similarity=0.263  Sum_probs=27.3

Q ss_pred             hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .|.++++.+..     .+..+.|+|++|+|||||.+.|+...
T Consensus        57 ~i~~~L~~~~~-----~~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           57 AISDALKEIDS-----SVLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             HHHHHHHHHHH-----CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             hhhhhhhhccc-----CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence            35555554432     24589999999999999999998743

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.00  E-value=0.0088  Score=50.45  Aligned_cols=23  Identities=17%  Similarity=0.258  Sum_probs=20.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus         9 ~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            9 LFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999988764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.00  E-value=0.016  Score=49.84  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=20.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHc
Confidence            57999999999999999988876

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.99  E-value=0.0093  Score=56.81  Aligned_cols=26  Identities=27%  Similarity=0.416  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.++.|+|+.|||||||.+.|+...
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCC
Confidence            47899999999999999999888754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=94.99  E-value=0.013  Score=49.69  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            46899999999999999888774

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.98  E-value=0.014  Score=51.27  Aligned_cols=24  Identities=17%  Similarity=0.191  Sum_probs=20.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ...+|+|+|..|+|||||.+.|++
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHh
Confidence            357999999999999999987775

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=94.98  E-value=0.012  Score=53.24  Aligned_cols=25  Identities=32%  Similarity=0.409  Sum_probs=23.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +..|.|.|..||||||+++.|+.++
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            4679999999999999999999986

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=94.97  E-value=0.015  Score=49.93  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=20.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            46899999999999999888765

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=94.96  E-value=0.011  Score=50.50  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=19.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|..|+|||||.+.|++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4799999999999999888764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=94.96  E-value=0.014  Score=50.35  Aligned_cols=23  Identities=17%  Similarity=0.288  Sum_probs=20.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~   45 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQ   45 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhc
Confidence            35899999999999999888775

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=94.96  E-value=0.0096  Score=51.20  Aligned_cols=22  Identities=32%  Similarity=0.465  Sum_probs=20.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|+.|+|||||.+.|++
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5799999999999999998876

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=94.96  E-value=0.015  Score=49.93  Aligned_cols=23  Identities=13%  Similarity=0.212  Sum_probs=20.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~   38 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFAD   38 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHc
Confidence            35899999999999999888775

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=94.96  E-value=0.012  Score=55.46  Aligned_cols=26  Identities=19%  Similarity=0.341  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|..+.|+|+.|||||||.|.|+..+
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            47799999999999999999988754

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=94.93  E-value=0.015  Score=50.06  Aligned_cols=23  Identities=17%  Similarity=0.208  Sum_probs=20.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~   43 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTD   43 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhc
Confidence            35899999999999999988775

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=94.93  E-value=0.013  Score=54.62  Aligned_cols=33  Identities=24%  Similarity=0.305  Sum_probs=26.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +.++.|+|+.|||||||.|.|+..+ -...++.+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~   62 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFI   62 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEE
Confidence            6789999999999999999998876 44444544

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=94.92  E-value=0.034  Score=59.12  Aligned_cols=36  Identities=19%  Similarity=0.330  Sum_probs=32.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+|++|++|+|||+++|.+++.+.+.+.....+|+.
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s  558 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMS  558 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEech
Confidence            699999999999999999999998777778788763

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=94.89  E-value=0.012  Score=49.54  Aligned_cols=22  Identities=27%  Similarity=0.277  Sum_probs=20.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|.++|+.|+|||||.+.|++
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            5799999999999999998875

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=94.89  E-value=0.016  Score=49.60  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=20.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||.+.|++.
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            358999999999999998887653

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=94.88  E-value=0.04  Score=55.01  Aligned_cols=54  Identities=13%  Similarity=0.188  Sum_probs=36.9

Q ss_pred             cCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCC-cEEE
Q 017141           16 YIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYK-KVAY   70 (376)
Q Consensus        16 ~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~-~v~~   70 (376)
                      .+.++=.++++.+...-.. ....++|.|+.||||||+++.+++++...+. .+++
T Consensus        25 ~Ln~~Q~~av~~~~~~i~~-~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~   79 (459)
T 3upu_A           25 DLTEGQKNAFNIVMKAIKE-KKHHVTINGPAGTGATTLTKFIIEALISTGETGIIL   79 (459)
T ss_dssp             CCCHHHHHHHHHHHHHHHS-SSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             cCCHHHHHHHHHHHHHHhc-CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence            3444545566554321000 1238999999999999999999999998876 4444

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.88  E-value=0.017  Score=49.97  Aligned_cols=23  Identities=17%  Similarity=0.249  Sum_probs=20.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~   50 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLT   50 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            57999999999999999988876

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=94.88  E-value=0.015  Score=50.58  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=20.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~   46 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVE   46 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCcCHHHHHHHHHh
Confidence            56899999999999999988876

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=94.86  E-value=0.007  Score=52.96  Aligned_cols=25  Identities=24%  Similarity=0.236  Sum_probs=22.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      .+.+|.|+|+.|+|||||.+.|++.
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4779999999999999999988753

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=94.85  E-value=0.019  Score=58.02  Aligned_cols=40  Identities=15%  Similarity=0.039  Sum_probs=35.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~   75 (376)
                      ++..++|.|++|+|||||+..++..+... |.+|+|+++.-
T Consensus       241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~  281 (503)
T 1q57_A          241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE  281 (503)
T ss_dssp             TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred             CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence            46789999999999999999999888876 88999998854

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.85  E-value=0.015  Score=49.88  Aligned_cols=24  Identities=29%  Similarity=0.325  Sum_probs=21.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ...+|+|+|..|+|||||.+.|++
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            357999999999999999988874

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=94.83  E-value=0.017  Score=49.70  Aligned_cols=23  Identities=26%  Similarity=0.325  Sum_probs=20.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHc
Confidence            46899999999999999988876

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=94.82  E-value=0.017  Score=50.08  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=21.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||.+.|++.
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            468999999999999999887754

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=94.82  E-value=0.023  Score=53.87  Aligned_cols=34  Identities=15%  Similarity=0.179  Sum_probs=26.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      ...|++.|++|+||||+++.+++.+   +.....+++
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~   88 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEM---SANIKTTAA   88 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecc
Confidence            4579999999999999999998874   344444444

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.82  E-value=0.024  Score=54.18  Aligned_cols=26  Identities=23%  Similarity=0.312  Sum_probs=23.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      +..+++.|++|+||||++|.+++.+.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            46899999999999999999999974

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=94.82  E-value=0.018  Score=49.73  Aligned_cols=23  Identities=17%  Similarity=0.228  Sum_probs=20.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        20 ~~ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           20 ELKVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Confidence            46999999999999999987765

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.80  E-value=0.029  Score=55.85  Aligned_cols=26  Identities=27%  Similarity=0.493  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+.-||+.||+|+|||++||.+++.+
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~~  230 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANST  230 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            35679999999999999999999987

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=94.80  E-value=0.018  Score=49.70  Aligned_cols=24  Identities=17%  Similarity=0.281  Sum_probs=20.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||.+.|++.
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhC
Confidence            458999999999999998877753

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=94.80  E-value=0.016  Score=58.17  Aligned_cols=27  Identities=19%  Similarity=0.345  Sum_probs=24.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      ...++++|++|+||||+++.|++.+.+
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~l~~  227 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQIIN  227 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence            457899999999999999999999864

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=94.79  E-value=0.017  Score=49.92  Aligned_cols=23  Identities=13%  Similarity=0.316  Sum_probs=20.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~   36 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMY   36 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHh
Confidence            46999999999999999877764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=94.75  E-value=0.015  Score=50.46  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=20.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Confidence            35899999999999999887764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=94.74  E-value=0.018  Score=50.03  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=20.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ...+|+|+|..|+|||||.+.|++
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~   50 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCK   50 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHh
Confidence            357999999999999999888765

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=94.74  E-value=0.014  Score=49.33  Aligned_cols=23  Identities=13%  Similarity=0.216  Sum_probs=20.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~   29 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLT   29 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999888776

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=94.73  E-value=0.019  Score=56.08  Aligned_cols=39  Identities=21%  Similarity=0.119  Sum_probs=27.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +|..+.|+|+.|||||||.|.|+...--...++.+-+-|
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~   91 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE   91 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEE
Confidence            477999999999999999998876542222345543333

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=94.73  E-value=0.014  Score=49.94  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=20.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        18 ~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           18 ELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Confidence            57999999999999999887764

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.72  E-value=0.03  Score=57.35  Aligned_cols=26  Identities=27%  Similarity=0.558  Sum_probs=24.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +++.++++||+|+||||++|.+++.+
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l  132 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSL  132 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            57899999999999999999999987

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=94.72  E-value=0.019  Score=49.77  Aligned_cols=23  Identities=35%  Similarity=0.375  Sum_probs=20.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            56999999999999999988876

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=94.71  E-value=0.019  Score=49.53  Aligned_cols=24  Identities=17%  Similarity=0.147  Sum_probs=20.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||.+.|++.
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcC
Confidence            469999999999999998887653

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=94.70  E-value=0.012  Score=60.04  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=27.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      +..++|+|++||||||+.+.|++.+ ....+.+.++
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i-~~~~giitie  294 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFI-PPDAKVVSIE  294 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGS-CTTCCEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC-CCCCCEEEEc
Confidence            4569999999999999999998876 4344555554

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=94.69  E-value=0.03  Score=54.53  Aligned_cols=25  Identities=16%  Similarity=0.227  Sum_probs=22.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +..||+.|+.|+|||++++.+++.+
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~  172 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAES  172 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhh
Confidence            5689999999999999999998874

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=94.67  E-value=0.016  Score=50.32  Aligned_cols=23  Identities=17%  Similarity=0.493  Sum_probs=20.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.++|.+
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            57999999999999999876655

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.66  E-value=0.018  Score=50.58  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=21.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||.+.|++.
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            468999999999999999888763

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=94.66  E-value=0.064  Score=55.38  Aligned_cols=49  Identities=16%  Similarity=0.228  Sum_probs=37.1

Q ss_pred             CChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141           17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL   71 (376)
Q Consensus        17 ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l   71 (376)
                      +.++=.++++.+..      ...++|.|+.|+||||+++.++..+...+.+|.++
T Consensus       190 L~~~Q~~Av~~~~~------~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~  238 (574)
T 3e1s_A          190 LSEEQASVLDQLAG------HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC  238 (574)
T ss_dssp             CCHHHHHHHHHHTT------CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCHHHHHHHHHHHh------CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence            33433445554432      46899999999999999999999998888777764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=94.66  E-value=0.013  Score=49.99  Aligned_cols=24  Identities=29%  Similarity=0.297  Sum_probs=21.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||.+.|++.
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            569999999999999998887753

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=94.66  E-value=0.014  Score=52.50  Aligned_cols=33  Identities=24%  Similarity=0.249  Sum_probs=27.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      -..|-++|+-||||||++++|.. +     ...++|+|.
T Consensus         9 ~~~iglTGgigsGKStv~~~l~~-~-----g~~vidaD~   41 (210)
T 4i1u_A            9 MYAIGLTGGIGSGKTTVADLFAA-R-----GASLVDTDL   41 (210)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH-T-----TCEEEEHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHH-C-----CCcEEECcH
Confidence            45789999999999999999876 2     467889986

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=94.65  E-value=0.014  Score=52.38  Aligned_cols=35  Identities=20%  Similarity=0.162  Sum_probs=27.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      +..|+|+|++|+||||++..|+.+.    .  -++..|--|
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g----~--~iIsdDs~~   68 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG----H--RLIADDRVD   68 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT----C--EEEESSEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC----C--eEEecchhh
Confidence            6689999999999999999887653    3  566666443

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=94.65  E-value=0.019  Score=55.90  Aligned_cols=35  Identities=37%  Similarity=0.566  Sum_probs=26.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+||.|||||||.|.++...--...++.+
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i   63 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISL   63 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEE
Confidence            46789999999999999999998865333334444

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.64  E-value=0.011  Score=54.26  Aligned_cols=25  Identities=20%  Similarity=0.385  Sum_probs=22.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +.-+++.|++|+||||+++.+++.+
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHh
Confidence            3458999999999999999999976

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=94.61  E-value=0.031  Score=65.21  Aligned_cols=60  Identities=20%  Similarity=0.190  Sum_probs=47.0

Q ss_pred             CccCChhHHHHHHHhhc-cCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           14 AIYIPREWSDAADSIAY-DSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        14 ~~~ip~~W~~~~~~i~~-~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      .-.+|-.|.+ +|.+.. .. -..+..|+++||.|+||||||..+++.+.+.|++|+|+|.+=
T Consensus      1405 ~~~isTG~~~-LD~lLG~GG-i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A         1405 VETISTGSLS-LDIALGAGG-LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp             CCEECCSCHH-HHHHHSSSS-EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred             cccccCCCHH-HHHhcCCCC-ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence            4456666666 665543 21 124779999999999999999999999999999999999863

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=94.61  E-value=0.019  Score=56.22  Aligned_cols=37  Identities=16%  Similarity=0.169  Sum_probs=32.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      .+++.|.-|+||||++..|+-.+.+.|++|.++|+ +.
T Consensus         4 i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~   40 (374)
T 3igf_A            4 ILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AE   40 (374)
T ss_dssp             EEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SC
T ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CC
Confidence            45666767999999999999999999999999999 53

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=94.59  E-value=0.02  Score=53.88  Aligned_cols=33  Identities=21%  Similarity=0.438  Sum_probs=28.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      +.++|.|+.|+|||||++.+++.+     .+.|+|++.
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~-----~~~~~~~~~   64 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNER-----PGILIDCRE   64 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHS-----SEEEEEHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHc-----CcEEEEeec
Confidence            689999999999999999998875     278888753

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=94.58  E-value=0.022  Score=49.97  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=20.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||.+.|++.
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            579999999999999999888763

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=94.58  E-value=0.047  Score=49.24  Aligned_cols=37  Identities=19%  Similarity=0.118  Sum_probs=33.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      .+...+++|+-|+||||.+.-++.++...+.+|+++-
T Consensus        27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k   63 (214)
T 2j9r_A           27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK   63 (214)
T ss_dssp             SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            4678889999999999999999999999999999985

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.58  E-value=0.036  Score=55.33  Aligned_cols=26  Identities=23%  Similarity=0.528  Sum_probs=24.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.-||+.||+|+|||++++.+++.+
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e~  239 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAATI  239 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            46789999999999999999999986

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=94.58  E-value=0.011  Score=50.87  Aligned_cols=24  Identities=29%  Similarity=0.473  Sum_probs=20.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..++|+|+|..|+|||||.+.|++
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            357999999999999999888764

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=94.58  E-value=0.044  Score=52.30  Aligned_cols=42  Identities=14%  Similarity=0.104  Sum_probs=32.2

Q ss_pred             hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        19 ~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      +.|..+.+.+..+.   .+..+++.|+.|+||||+++.+++.+..
T Consensus         9 ~~~~~l~~~i~~~~---~~~a~L~~G~~G~GKt~~a~~la~~l~~   50 (334)
T 1a5t_A            9 PDFEKLVASYQAGR---GHHALLIQALPGMGDDALIYALSRYLLC   50 (334)
T ss_dssp             HHHHHHHHHHHTTC---CCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcCC---cceeEEEECCCCchHHHHHHHHHHHHhC
Confidence            35666666665322   3567999999999999999999999863

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=94.57  E-value=0.02  Score=50.46  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=21.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||.+.|++.
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999888763

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=94.57  E-value=0.021  Score=55.55  Aligned_cols=35  Identities=20%  Similarity=0.311  Sum_probs=26.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      ++..+.|+|+.|||||||.|.|+...--...++.+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i   62 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF   62 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEE
Confidence            46789999999999999999998764322334544

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=94.57  E-value=0.02  Score=49.85  Aligned_cols=23  Identities=13%  Similarity=0.196  Sum_probs=20.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            36899999999999999887765

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=94.55  E-value=0.022  Score=55.51  Aligned_cols=35  Identities=14%  Similarity=0.246  Sum_probs=26.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      ++..+.++|+.|||||||.|.|+...--...++.+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i   62 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF   62 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEE
Confidence            46789999999999999999998764222234444

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=94.55  E-value=0.024  Score=53.65  Aligned_cols=35  Identities=11%  Similarity=0.039  Sum_probs=28.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      ..+++.|++|+|||++++.+++.+   +.....+++.+
T Consensus        47 ~~vll~G~pGtGKT~la~~la~~~---~~~~~~i~~~~   81 (331)
T 2r44_A           47 GHILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQFTP   81 (331)
T ss_dssp             CCEEEESCCCHHHHHHHHHHHHHT---TCCEEEEECCT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh---CCCeEEEecCC
Confidence            459999999999999999999976   44566666643

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=94.55  E-value=0.021  Score=51.36  Aligned_cols=24  Identities=25%  Similarity=0.602  Sum_probs=22.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ..+++.||+|+||||+|..|++.+
T Consensus        59 n~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            369999999999999999999987

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=94.54  E-value=0.016  Score=50.60  Aligned_cols=24  Identities=13%  Similarity=0.238  Sum_probs=20.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||.+.|++.
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            468999999999999999888754

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=94.54  E-value=0.021  Score=55.53  Aligned_cols=35  Identities=20%  Similarity=0.156  Sum_probs=26.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      ++..+.|+|++|||||||.|.|+...--...++.+
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i   74 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI   74 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Confidence            46789999999999999999998764322234444

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.54  E-value=0.041  Score=59.38  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=29.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHH-------cCCcEEEEcC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQ-------RYKKVAYLDT   73 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~-------~~~~v~~lDl   73 (376)
                      .+.++++|++|+||||+++.|++.+..       .+..++++|+
T Consensus       191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~  234 (854)
T 1qvr_A          191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM  234 (854)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred             CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence            446899999999999999999999866       2455666654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=94.53  E-value=0.022  Score=55.86  Aligned_cols=35  Identities=17%  Similarity=0.295  Sum_probs=26.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.++|+.|||||||.|.|+...--...++.+
T Consensus        28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i   62 (381)
T 3rlf_A           28 EGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI   62 (381)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEE
Confidence            47789999999999999999998765323334444

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=94.52  E-value=0.032  Score=55.67  Aligned_cols=26  Identities=15%  Similarity=0.262  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..||+.|++|+|||++++.+++.+
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHc
Confidence            35689999999999999999999975

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=94.52  E-value=0.0098  Score=51.56  Aligned_cols=23  Identities=13%  Similarity=0.207  Sum_probs=5.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      .+|+|+|..|+|||||.+.|++.
T Consensus        21 ~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEC-----------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            58999999999999999988765

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.50  E-value=0.022  Score=49.89  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=20.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHhc
Confidence            45899999999999999887776

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.49  E-value=0.022  Score=48.99  Aligned_cols=23  Identities=22%  Similarity=0.219  Sum_probs=20.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      .+|+|+|..|+|||||.+.|++.
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            58999999999999999888764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=94.49  E-value=0.013  Score=49.87  Aligned_cols=25  Identities=16%  Similarity=0.084  Sum_probs=10.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ..+|+|+|..|+|||||.+.|++.-
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~~   32 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSEDA   32 (183)
T ss_dssp             EEEEEEECCCCC-------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            3689999999999999999887643

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.47  E-value=0.023  Score=48.15  Aligned_cols=23  Identities=30%  Similarity=0.287  Sum_probs=20.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLV   58 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~   58 (376)
                      ...+|+|+|+.|+|||||.+.|+
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CccEEEEECCCCCCHHHHHHHHh
Confidence            36799999999999999987665

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.46  E-value=0.04  Score=54.96  Aligned_cols=26  Identities=27%  Similarity=0.372  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+.-||+.||+|+|||++|+.+++.+
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e~  239 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQT  239 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHHh
Confidence            46689999999999999999999986

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=94.45  E-value=0.024  Score=55.45  Aligned_cols=35  Identities=20%  Similarity=0.337  Sum_probs=26.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      ++..+.|+|+.|||||||.|.|+...--...++.+
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i   70 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF   70 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEE
Confidence            46789999999999999999998754222234444

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=94.42  E-value=0.019  Score=55.71  Aligned_cols=35  Identities=17%  Similarity=0.236  Sum_probs=26.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      ++..+.++|+.|||||||.|.|+...--...++.+
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~   59 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL   59 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred             CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE
Confidence            46789999999999999999998764222234444

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=94.41  E-value=0.069  Score=50.19  Aligned_cols=25  Identities=28%  Similarity=0.406  Sum_probs=21.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +..+++.|++|+||||+++.+++.+
T Consensus        48 ~~~~L~~G~~G~GKT~la~~la~~l   72 (324)
T 3u61_B           48 PHIILHSPSPGTGKTTVAKALCHDV   72 (324)
T ss_dssp             CSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            4566777779999999999999886

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=94.40  E-value=0.023  Score=49.45  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=20.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~   47 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSK   47 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            35899999999999999987775

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=94.38  E-value=0.019  Score=49.77  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=21.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||.+.|++.
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            579999999999999999988764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=94.37  E-value=0.024  Score=49.49  Aligned_cols=23  Identities=17%  Similarity=0.206  Sum_probs=20.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhh
Confidence            46899999999999999988765

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=94.37  E-value=0.0083  Score=55.18  Aligned_cols=26  Identities=27%  Similarity=0.217  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+..|.|.|..||||||+++.|+.++
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc
Confidence            46789999999999999999999876

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.37  E-value=0.019  Score=57.26  Aligned_cols=25  Identities=24%  Similarity=0.278  Sum_probs=21.9

Q ss_pred             CCCE--EEEEcCCCCcHHHHHHHHHHH
Q 017141           36 PPPI--AFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        36 ~~~~--vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      .|..  ++|+|+.|+|||||.+.|++.
T Consensus        39 ~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           39 QGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            3556  999999999999999999876

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=94.36  E-value=0.024  Score=55.42  Aligned_cols=26  Identities=27%  Similarity=0.448  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+.|+|+.|||||||.|.|+...
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            46789999999999999999998764

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=94.35  E-value=0.043  Score=63.23  Aligned_cols=43  Identities=23%  Similarity=0.333  Sum_probs=38.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      ++..++|.|++|+||||||..++..+.+.+.+|+|+|++-.-.
T Consensus       382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~  424 (1706)
T 3cmw_A          382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD  424 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchH
Confidence            4779999999999999999999999999999999999986543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=94.34  E-value=0.024  Score=53.09  Aligned_cols=24  Identities=21%  Similarity=0.477  Sum_probs=21.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..|+|+|+|..|+|||||...|++
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g   46 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVG   46 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHT
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHC
Confidence            468999999999999999877764

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=94.34  E-value=0.039  Score=54.13  Aligned_cols=30  Identities=27%  Similarity=0.217  Sum_probs=25.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRY   65 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~   65 (376)
                      ...+|.++|..|+|||||+..|++...+.+
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g   39 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTYVAAAEN   39 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSC
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHhhhhhcC
Confidence            356899999999999999999998765554

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=94.32  E-value=0.23  Score=46.81  Aligned_cols=23  Identities=30%  Similarity=0.400  Sum_probs=19.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLV   58 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~   58 (376)
                      +...|.|+|..|+|||||...|+
T Consensus         9 ~~g~v~ivG~~nvGKSTLin~l~   31 (308)
T 3iev_A            9 KVGYVAIVGKPNVGKSTLLNNLL   31 (308)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHh
Confidence            35689999999999999987776

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=94.32  E-value=0.015  Score=50.27  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=20.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      .+|+|+|..|+|||||.+.|++.
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC-
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            58999999999999999888653

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=94.27  E-value=0.026  Score=55.58  Aligned_cols=39  Identities=15%  Similarity=0.198  Sum_probs=29.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      ++..+.|+|+.|||||||.|+|+... ....++.+-+-|+
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaGl~-~~~G~I~i~G~~i   84 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLRLL-NTEGEIQIDGVSW   84 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTCS-EEEEEEEESSCBT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCC-CCCeEEEECCEEC
Confidence            47899999999999999999998754 3434555533343

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=94.27  E-value=0.016  Score=49.69  Aligned_cols=24  Identities=29%  Similarity=0.437  Sum_probs=21.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ...+|+|+|..|+|||||.+.|++
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~   38 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLAS   38 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhc
Confidence            357999999999999999988764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=94.25  E-value=0.013  Score=50.35  Aligned_cols=24  Identities=29%  Similarity=0.281  Sum_probs=21.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||.+.|++.
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            579999999999999998887754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=94.21  E-value=0.022  Score=50.07  Aligned_cols=23  Identities=26%  Similarity=0.277  Sum_probs=19.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHhc
Confidence            35899999999999999877764

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=94.18  E-value=0.058  Score=51.41  Aligned_cols=26  Identities=27%  Similarity=0.379  Sum_probs=23.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      +..+++.|+.|+||||+++.+++.+.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45789999999999999999999873

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=94.16  E-value=0.018  Score=49.94  Aligned_cols=24  Identities=25%  Similarity=0.224  Sum_probs=20.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ...+|+|+|..|+|||||.+.|++
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CccEEEEECCCCCCHHHHHHHHHh
Confidence            357999999999999999987753

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=94.13  E-value=0.021  Score=50.98  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||...|++
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            57999999999999999887765

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=94.13  E-value=0.022  Score=50.29  Aligned_cols=24  Identities=21%  Similarity=0.385  Sum_probs=20.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||.+.|++.
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            468999999999999999888753

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=94.12  E-value=0.023  Score=51.14  Aligned_cols=23  Identities=13%  Similarity=0.286  Sum_probs=20.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||...|++
T Consensus        29 ~~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           29 QLRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHcC
Confidence            57999999999999999887764

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=94.10  E-value=0.053  Score=53.45  Aligned_cols=32  Identities=13%  Similarity=0.186  Sum_probs=28.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKK   67 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~   67 (376)
                      .|.+++|+|+.|+||||+++.|++.+..++..
T Consensus       173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~  204 (422)
T 3ice_A          173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPD  204 (422)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTT
T ss_pred             CCcEEEEecCCCCChhHHHHHHHHHHhhcCCC
Confidence            48899999999999999999999998776544

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=94.09  E-value=0.033  Score=53.93  Aligned_cols=36  Identities=19%  Similarity=0.113  Sum_probs=29.0

Q ss_pred             HHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           23 DAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        23 ~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+++.+.. -  ..|.++.|+|+.|+|||||.+.|++..
T Consensus        60 ~ald~ll~-i--~~Gq~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           60 RAIDGLLT-C--GIGQRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             HHHHHHSC-E--ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEeeee-e--cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            56776632 1  247899999999999999999999985

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=94.07  E-value=0.031  Score=49.44  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus        27 ~~ki~vvG~~~vGKSsL~~~l~~   49 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKTAMLQVLAK   49 (214)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHhc
Confidence            46999999999999999988776

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=94.07  E-value=0.053  Score=62.50  Aligned_cols=41  Identities=24%  Similarity=0.368  Sum_probs=37.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      .+..++|+|++|||||+||..++..+++.|.+|+|+++.-.
T Consensus        33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~   73 (1706)
T 3cmw_A           33 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA   73 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCc
Confidence            46799999999999999999999999999999999999754

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=94.07  E-value=0.071  Score=56.55  Aligned_cols=40  Identities=20%  Similarity=0.272  Sum_probs=30.2

Q ss_pred             hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      ++..+++.+..    ..+..++++|++|+||||+++.|++.+..
T Consensus       194 ~i~~l~~~l~~----~~~~~vlL~G~~GtGKT~la~~la~~l~~  233 (758)
T 1r6b_X          194 ELERAIQVLCR----RRKNNPLLVGESGVGKTAIAEGLAWRIVQ  233 (758)
T ss_dssp             HHHHHHHHHTS----SSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc----cCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence            44555554432    23567999999999999999999998865

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=94.05  E-value=0.028  Score=58.31  Aligned_cols=42  Identities=10%  Similarity=0.148  Sum_probs=32.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      +..++++|++|+||||++|.+++.+-.......+++.++-..
T Consensus        60 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~  101 (604)
T 3k1j_A           60 KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE  101 (604)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT
T ss_pred             CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc
Confidence            457999999999999999999997755444566676665543

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.04  E-value=0.032  Score=60.22  Aligned_cols=37  Identities=19%  Similarity=0.320  Sum_probs=32.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ..++++|++|+|||+++|.|++.+.+.+.....+|+.
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~  625 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT  625 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEech
Confidence            4799999999999999999999998777777777764

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=94.04  E-value=0.049  Score=63.59  Aligned_cols=41  Identities=24%  Similarity=0.368  Sum_probs=37.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      .+..++++|+.|+|||||+..++..+.+.|.+++|++++=.
T Consensus      1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~ 1120 (2050)
T 3cmu_A         1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1120 (2050)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcccc
Confidence            46789999999999999999999999999999999999743

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=94.01  E-value=0.02  Score=55.59  Aligned_cols=26  Identities=31%  Similarity=0.277  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+.|+|+.|||||||.|.|+...
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            46789999999999999999998754

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=93.99  E-value=0.037  Score=56.04  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=22.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +..||+.|++|+|||+++|.+++.+
T Consensus       238 ~~~vLL~GppGtGKT~lAraia~~~  262 (489)
T 3hu3_A          238 PRGILLYGPPGTGKTLIARAVANET  262 (489)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCcEEEECcCCCCHHHHHHHHHHHh
Confidence            5679999999999999999998875

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=93.98  E-value=0.033  Score=49.36  Aligned_cols=24  Identities=13%  Similarity=0.173  Sum_probs=20.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|..|+|||||.+.|++.
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcC
Confidence            358999999999999999887763

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.97  E-value=0.051  Score=53.68  Aligned_cols=26  Identities=23%  Similarity=0.382  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.-||+.||+|+|||++||.+++.+
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e~  206 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHHT  206 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHhh
Confidence            45679999999999999999999986

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=93.94  E-value=0.016  Score=51.16  Aligned_cols=24  Identities=33%  Similarity=0.383  Sum_probs=20.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..++|+|+|..|+|||||...|++
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~   51 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCN   51 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTT
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhC
Confidence            367999999999999999877654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=93.93  E-value=0.021  Score=49.79  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=25.1

Q ss_pred             HHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           23 DAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        23 ~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+++.+.-   .....+|+++|+.|+|||||.+.|++
T Consensus        14 ~~l~~~~~---~~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           14 SVLQFLGL---YKKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             HHHHHHTC---TTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHhhc---cCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            45555532   12356899999999999999998864

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=93.89  E-value=0.036  Score=48.13  Aligned_cols=23  Identities=17%  Similarity=0.281  Sum_probs=20.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            35899999999999999887764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=93.86  E-value=0.064  Score=54.15  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=22.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +.-|+++|++|+||||++|.+++.+
T Consensus        49 p~gvLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           49 PKGILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            4569999999999999999999975

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=93.86  E-value=0.036  Score=53.92  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=20.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +..+.|+|++|+|||||.+.|+.
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g  237 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLG  237 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCEEEEECCCCccHHHHHHHHhc
Confidence            56899999999999999988874

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=93.85  E-value=0.047  Score=49.23  Aligned_cols=26  Identities=31%  Similarity=0.309  Sum_probs=24.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+..|.+.|+.||||||.++.|++++
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l   29 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKL   29 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999999997

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=93.85  E-value=0.022  Score=58.86  Aligned_cols=35  Identities=11%  Similarity=0.152  Sum_probs=27.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|||||||.+.|+...--...++.+
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~  402 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL  402 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence            57899999999999999999998765333344444

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=93.85  E-value=0.036  Score=56.81  Aligned_cols=27  Identities=26%  Similarity=0.288  Sum_probs=23.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           35 SPPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        35 ~~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+|.++.++|+.|||||||.|.|+..+
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            357899999999999999999998754

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=93.84  E-value=0.046  Score=54.68  Aligned_cols=25  Identities=28%  Similarity=0.525  Sum_probs=23.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +..|+++|++|+||||++|.|++.+
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l   74 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLA   74 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHc
Confidence            4579999999999999999999986

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=93.84  E-value=0.021  Score=55.53  Aligned_cols=23  Identities=35%  Similarity=0.457  Sum_probs=20.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ++|.|+|..|+|||||.+.|++.
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~  202 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGL  202 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC
Confidence            45999999999999999988864

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.81  E-value=0.054  Score=54.38  Aligned_cols=26  Identities=31%  Similarity=0.480  Sum_probs=24.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.-||+.||+|+|||+++|.+++.+
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e~  267 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANRT  267 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhcc
Confidence            56789999999999999999999987

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=93.75  E-value=0.037  Score=48.34  Aligned_cols=23  Identities=17%  Similarity=0.073  Sum_probs=20.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus         9 ~~ki~i~G~~~~GKTsli~~l~~   31 (212)
T 2j0v_A            9 FIKCVTVGDGAVGKTCMLICYTS   31 (212)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999987775

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=93.75  E-value=0.043  Score=54.74  Aligned_cols=26  Identities=19%  Similarity=0.351  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+|+.||+|+|||++++.+++.+
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l   87 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQEL   87 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHh
Confidence            35679999999999999999999986

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=93.70  E-value=0.034  Score=48.73  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=21.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +.-|+++|++|+||||++..|+.
T Consensus        16 G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            56799999999999999998876

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=93.70  E-value=0.069  Score=48.37  Aligned_cols=36  Identities=31%  Similarity=0.335  Sum_probs=32.6

Q ss_pred             CCEEEEEcC-CCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           37 PPIAFICGA-KNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        37 ~~~vlV~G~-~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      -++++|.|. +|+||||++.-|+..+.++|.+|.+.-
T Consensus         4 mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K   40 (228)
T 3of5_A            4 MKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK   40 (228)
T ss_dssp             CEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence            367999998 799999999999999999999999964

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=93.69  E-value=0.041  Score=54.92  Aligned_cols=36  Identities=8%  Similarity=0.074  Sum_probs=29.2

Q ss_pred             HHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           23 DAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        23 ~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+++.+. .-  .+|.++.|+|+.|+|||||.+.|++..
T Consensus       146 ~vld~vl-~i--~~Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          146 RAINALL-TV--GRGQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             HHHHHHS-CC--BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             eEEeeeE-Ee--cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            4777762 22  247899999999999999999999975

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=93.68  E-value=0.032  Score=51.35  Aligned_cols=22  Identities=45%  Similarity=0.702  Sum_probs=19.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ++|+++|..|+|||||...|++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g   23 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTN   23 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            5899999999999999887754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=93.66  E-value=0.031  Score=48.70  Aligned_cols=22  Identities=18%  Similarity=0.265  Sum_probs=19.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLV   58 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~   58 (376)
                      ..+|+|+|..|+|||||.+.|+
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999988764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=93.62  E-value=0.042  Score=51.91  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=20.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLV   58 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~   58 (376)
                      +..+.++|++|+|||||.+.|+
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            5789999999999999999988

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A

Probab=93.61  E-value=0.085  Score=48.37  Aligned_cols=36  Identities=31%  Similarity=0.289  Sum_probs=33.3

Q ss_pred             CCEEEEEcC-CCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           37 PPIAFICGA-KNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        37 ~~~vlV~G~-~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      .++++|.|. +|+|||+++.-|+..|.++|.+|.+.-
T Consensus        21 ~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK   57 (242)
T 3qxc_A           21 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK   57 (242)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence            578999997 799999999999999999999999985

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=93.56  E-value=0.1  Score=46.40  Aligned_cols=41  Identities=20%  Similarity=0.099  Sum_probs=37.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      ...|+|.+++|.||||.|--++-+++..|.+|+++-.+.|.
T Consensus        28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~   68 (196)
T 1g5t_A           28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT   68 (196)
T ss_dssp             CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC
Confidence            45789999999999999999999999999999999887763

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=93.54  E-value=0.032  Score=52.68  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=20.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+|+.|+|||||.+.|+..
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCC
Confidence            357999999999999999998764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=93.45  E-value=0.031  Score=47.87  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=20.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLV   58 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~   58 (376)
                      ...+|+|+|..|+|||||.+.|+
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            36799999999999999988774

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=93.40  E-value=0.024  Score=53.69  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      -+++.|++|+|||+++|.+++.+
T Consensus        47 ~vLl~G~~GtGKT~la~~la~~~   69 (350)
T 1g8p_A           47 GVLVFGDRGTGKSTAVRALAALL   69 (350)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHS
T ss_pred             eEEEECCCCccHHHHHHHHHHhC
Confidence            39999999999999999999975

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=93.39  E-value=0.042  Score=54.95  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=22.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+.+++.|++|+||||+++.+++.+
T Consensus        50 ~~~vLL~GppGtGKTtlAr~ia~~~   74 (447)
T 3pvs_A           50 LHSMILWGPPGTGKTTLAEVIARYA   74 (447)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Confidence            3679999999999999999999986

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=93.34  E-value=0.054  Score=46.35  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=19.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ...+|+|+.||||||+.+.|.--
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~   49 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFV   49 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            38899999999999999987653

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=93.33  E-value=0.054  Score=49.89  Aligned_cols=23  Identities=13%  Similarity=0.326  Sum_probs=20.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||...|++
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~   61 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIG   61 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHhC
Confidence            57999999999999999887764

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=93.32  E-value=0.041  Score=50.94  Aligned_cols=24  Identities=21%  Similarity=0.430  Sum_probs=20.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..++|+|+|..|+|||||...|++
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g   48 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHC
Confidence            467999999999999999877754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=93.29  E-value=0.042  Score=50.03  Aligned_cols=23  Identities=13%  Similarity=0.277  Sum_probs=20.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||...|++
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~   44 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILR   44 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHhC
Confidence            56999999999999998877764

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=93.29  E-value=0.037  Score=51.04  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|.++|+.|+|||||...|++
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g   25 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTG   25 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            36899999999999999988864

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=93.26  E-value=0.041  Score=56.74  Aligned_cols=26  Identities=15%  Similarity=0.280  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|.++.|+|+.|||||||.+.|+...
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            57899999999999999999988754

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=93.22  E-value=0.046  Score=55.99  Aligned_cols=60  Identities=22%  Similarity=0.242  Sum_probs=41.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTP   96 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~   96 (376)
                      .+|+|+|+|..|+|||||...|.+.-....... -+-.|.+...+..++-..+++++.|+.
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~-giT~~i~~~~v~~~~g~~i~~iDTPGh   62 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAG-GITQHIGAFLVSLPSGEKITFLDTPGH   62 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSC-CBCCCTTSCCBCSSCSSCCBCEECSSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-ceeEEEeEEEEEeCCCCEEEEEECCCh
Confidence            368999999999999999999988765443221 233455555555544446677787763

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.19  E-value=0.1  Score=51.97  Aligned_cols=26  Identities=31%  Similarity=0.523  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+.-||+.||+|+|||++|+.+++.+
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e~  240 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQT  240 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred             CCCCCceECCCCchHHHHHHHHHHHh
Confidence            45679999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	376
d2p67a1	327	c.37.1.10 (A:1-327) LAO/AO transport system kinase	2e-04
d1hyqa_	232	c.37.1.10 (A:) Cell division regulator MinD {Archa	7e-04
d1g3qa_	237	c.37.1.10 (A:) Cell division regulator MinD {Archa	0.001
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.001
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.002

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 22/154 (14%), Positives = 42/154 (27%), Gaps = 4/154 (2%)

Query: 9   ENPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKV 68
           E+  P     +  S            +   +  + G    GK+TF      +L++   KV
Sbjct: 30  ESRHPRH---QALSTQLLDAIMPYCGNTLRLG-VTGTPGAGKSTFLEAFGMLLIREGLKV 85

Query: 69  AYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYI 128
           A +  D   P          T ++ L           P   +  G     R+     +  
Sbjct: 86  AVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAA 145

Query: 129 TTLYDYYRKEYYMFNESESPGRTELPLIVNTPGW 162
                         +E+E     +  + +   G 
Sbjct: 146 GYDVVIVETVGVGQSETEVARMVDCFISLQIAGG 179

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 38.6 bits (88), Expect = 7e-04
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query: 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78
          I    G    GKTT + +L   L Q    V  +D D+   
Sbjct: 4  ITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMA 43

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78
          I+ + G    GKTT + +L   L  R +KV  +D D+   
Sbjct: 5  ISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMA 44

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 10/47 (21%), Positives = 16/47 (34%)

Query: 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPG 84
          P+         GKTT  + L+  L  R  +   +       +   PG
Sbjct: 3  PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPG 49

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 10/42 (23%), Positives = 16/42 (38%)

Query: 42 ICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAP 83
          + G K+ GKTT     V   ++   +V  +       E   P
Sbjct: 6  VVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARP 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	376
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.33
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.17
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.02
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	97.81
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	97.79
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.79
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	97.78
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.76
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.75
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.72
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.68
d1okkd2	207	GTPase domain of the signal recognition particle r	97.67
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.67
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	97.65
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.62
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.59
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.57
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	97.56
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.52
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	97.52
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.5
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.49
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.48
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.47
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.46
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.4
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.37
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.37
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.36
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.36
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.33
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.32
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.31
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.31
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.3
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.27
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.27
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.24
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.22
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	97.22
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.2
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.15
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.13
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.1
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.09
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.05
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.03
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.98
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.97
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.96
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.95
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.95
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.92
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.89
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.88
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.87
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.83
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.81
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.8
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.77
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.77
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.73
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.65
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.54
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.51
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.5
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.5
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.49
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.44
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.44
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.4
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.35
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.34
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.33
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.32
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.28
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.21
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.21
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.19
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.19
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.17
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.17
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.11
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.11
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.11
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.11
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.1
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.08
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.06
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.98
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.96
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.93
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.88
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.87
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.87
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.85
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.78
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.77
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.74
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.74
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.73
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.7
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.68
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.68
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.68
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.66
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.65
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.65
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.65
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.65
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.63
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.62
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.61
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.6
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.59
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.59
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.57
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.57
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.56
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.55
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.54
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.53
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	95.52
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.51
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.51
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.49
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.48
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.48
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.48
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.47
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.47
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.47
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.45
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.43
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.43
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.43
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.43
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.42
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.4
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.38
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.38
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.38
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.37
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.36
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.35
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.35
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	95.35
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.34
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.32
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.29
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.28
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.28
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.26
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.24
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.22
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.19
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.19
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.18
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.17
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.14
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.12
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.11
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.11
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.11
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.07
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.04
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.03
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.03
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.0
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.97
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.94
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.93
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.93
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.88
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.85
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	94.85
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	94.82
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.79
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	94.74
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	94.69
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.67
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.64
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	94.62
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.6
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	94.59
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.55
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.51
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.49
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	94.47
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.39
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.37
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.34
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.34
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.31
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.3
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.22
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	94.19
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	94.12
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	94.09
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.06
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	94.03
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	94.02
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	93.94
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	93.81
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	93.79
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.79
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	93.77
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	93.71
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	93.68
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	93.65
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	93.64
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	93.52
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.47
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.47
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.33
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.29
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.09
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	93.03
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.93
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	92.89
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	92.86
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	92.85
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.77
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	92.75
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	92.73
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.62
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.61
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	92.52
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.49
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.43
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	92.17
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	92.13
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.73
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	91.53
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	91.53
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	91.51
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.36
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	91.34
d1tuea_	205	Replication protein E1 helicase domain {Human papi	91.08
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	90.7
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	90.59
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	90.54
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	90.5
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	90.33
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	90.08
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	89.94
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	89.83
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	89.79
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	89.41
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.02
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	88.61
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	87.88
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	87.08
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	86.88
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	86.38
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	85.96
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	85.39
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	85.19
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	85.03
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	84.7
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	83.93
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	83.87
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	83.6
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	83.14
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	83.0
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	82.11
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	81.59
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	81.45

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=2.5e-07  Score=77.00  Aligned_cols=51  Identities=22%  Similarity=0.273  Sum_probs=38.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEE
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSL   88 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl   88 (376)
                      |++.|+|.+|||||||++.|++++-++|.+|++++-|.+..++..++.=+.
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~~~~~~~~~~~d~~   53 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSY   53 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC------------
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEecccccccccccccCccH
Confidence            789999999999999999999999999999999999998877666654443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.17  E-value=1.8e-06  Score=76.08  Aligned_cols=41  Identities=20%  Similarity=0.275  Sum_probs=37.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      +.+++++|+.|+||||.+.-|+.++.+++++|.++.+|...
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R   50 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR   50 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc
Confidence            45788899999999999999999999999999999999654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=5e-06  Score=73.29  Aligned_cols=41  Identities=27%  Similarity=0.291  Sum_probs=37.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      +.+|+++|+.|+||||.+.-|++++.+++.+|.++-+|.-.
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R   49 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR   49 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc
Confidence            56888999999999999999999999999999999999654

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.81  E-value=9.7e-06  Score=70.89  Aligned_cols=42  Identities=26%  Similarity=0.298  Sum_probs=37.5

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ++|.|+++| |+||||++..|+..+.+.|++|+++|+|+.++.
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~~~~   44 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMAN   44 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSS
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Confidence            367788666 899999999999999999999999999998874

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=1.7e-05  Score=71.60  Aligned_cols=52  Identities=23%  Similarity=0.241  Sum_probs=39.4

Q ss_pred             HHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           22 SDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        22 ~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      ....+.++...    ...|+++|-=|+||||++-.|+-.+.++|++|.++|+||..
T Consensus         9 ~~~~~~~~~~~----~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~~   60 (279)
T d1ihua2           9 SALVDDIARNE----HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA   60 (279)
T ss_dssp             HHHHHHHHTTS----CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred             HHHHHHhhcCC----CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            34445555322    34555557669999999999999999999999999999953

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.79  E-value=1.3e-05  Score=66.90  Aligned_cols=41  Identities=22%  Similarity=0.215  Sum_probs=35.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      .+-|+|.+|||||||+..|+++|-++|.+|+++..|.+..+
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~~~   43 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGE   43 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccCccc
Confidence            56799999999999999999999999999999999877543

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.78  E-value=1.4e-05  Score=69.90  Aligned_cols=43  Identities=33%  Similarity=0.326  Sum_probs=38.5

Q ss_pred             CCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           37 PPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        37 ~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      +.+|.|.|.| |+||||++.-|+-++.++|++|+++|+|+.|+.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~~~~~   45 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMAN   45 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Confidence            3568888666 999999999999999999999999999998875

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.76  E-value=1.3e-05  Score=70.24  Aligned_cols=41  Identities=34%  Similarity=0.524  Sum_probs=36.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF   80 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~   80 (376)
                      +|+|.|+.|||||||++.|+.++ ..++++++|++|||..+.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~-~~~~~~~ivn~d~~~~~~   42 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL-EDNYKVAYVNLDTGVKEL   42 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-TTTSCEEEEECCSSCSCC
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH-hhCCeEEEEecCcccccC
Confidence            68999999999999999999775 567899999999998764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.1e-05  Score=67.01  Aligned_cols=48  Identities=25%  Similarity=0.215  Sum_probs=40.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCce
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGF   85 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~   85 (376)
                      +.|+|.|+.|+|||||++.++..+...+.++.++.+++.-.....-|+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~   49 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGF   49 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecccccccccccc
Confidence            359999999999999999999999999999999999987554433333

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.72  E-value=5.4e-06  Score=69.40  Aligned_cols=32  Identities=44%  Similarity=0.670  Sum_probs=27.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      |+|+++|+.||||||++|.|+.++     ..-|+|+|
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l-----~~~fiD~D   33 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKAL-----GVGLLDTD   33 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH-----TCCEEEHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHh-----CCCeEeec
Confidence            678888999999999999999998     33478887

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.68  E-value=3e-05  Score=65.38  Aligned_cols=38  Identities=26%  Similarity=0.279  Sum_probs=32.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +..|.|.|+.||||||||+.|.+.+-..+..+..++.|
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~   59 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD   59 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhccccccceecccc
Confidence            34566999999999999999999988888777777665

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.67  E-value=2.4e-05  Score=68.59  Aligned_cols=43  Identities=23%  Similarity=0.229  Sum_probs=38.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      .+.+||++|++||||||.+.-|++++.++|.+|.++-+|....
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~   47 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRA   47 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSST
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccc
Confidence            3678999999999999999999999999999999999996543

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.67  E-value=1.4e-05  Score=68.47  Aligned_cols=39  Identities=21%  Similarity=0.206  Sum_probs=35.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      |..|+++|.+||||||+++.|+.++-..+.++..++.|.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~   40 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQ   40 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccc
Confidence            457999999999999999999999988889999998884

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=3.1e-05  Score=69.98  Aligned_cols=40  Identities=33%  Similarity=0.439  Sum_probs=36.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      ++.|++.|--|+||||++-.|+..+.++|++|.++|+||.
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~   47 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA   47 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            6678888877999999999999999999999999999983

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.62  E-value=1.2e-05  Score=66.46  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=22.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      |+|+|+|+.||||||+|+.|+.++
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            679999999999999999999886

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.59  E-value=3.2e-05  Score=68.04  Aligned_cols=40  Identities=28%  Similarity=0.465  Sum_probs=37.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      ++.+|+++|++|+||||.+.-|+.++.+++++|+++-+|.
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt   49 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT   49 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecc
Confidence            4668899999999999999999999999999999999996

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.57  E-value=2.9e-05  Score=64.23  Aligned_cols=39  Identities=31%  Similarity=0.294  Sum_probs=31.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCC-cEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYK-KVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~-~v~~lDlD   74 (376)
                      .|..|+++|..||||||++|.|+.+|-..+. .+.++|.|
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~~~~~   44 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD   44 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhhhhhH
Confidence            5788999999999999999999999976543 44454444

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=3.3e-05  Score=66.33  Aligned_cols=41  Identities=20%  Similarity=0.143  Sum_probs=37.4

Q ss_pred             CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      +|++|+|-. |+||||++-.|+-.|.++|++|.++|.|+..+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d~~g~   43 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGS   43 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEEESC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECccccCC
Confidence            589999995 99999999999999999999999999996433

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.52  E-value=4.1e-05  Score=67.25  Aligned_cols=42  Identities=24%  Similarity=0.326  Sum_probs=33.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ   77 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ   77 (376)
                      .+.+|+++||+|+||||.+--|+.++.+++++|+++-+|...
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R   52 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYR   52 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccc
Confidence            366888999999999999999999999999999999999654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=97.52  E-value=3.6e-05  Score=69.12  Aligned_cols=41  Identities=22%  Similarity=0.192  Sum_probs=37.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      ++|.|.|-=|+||||++-.|+-.|.++|++|+++|+||+.+
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q~~   42 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKAD   42 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSC
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            36889997799999999999999999999999999999754

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=1.8e-05  Score=64.25  Aligned_cols=31  Identities=32%  Similarity=0.639  Sum_probs=25.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .|+++|+.||||||++|.|+..|     ..-|+|.|
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L-----~~~~id~~   34 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL-----NMEFYDSD   34 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT-----TCEEEEHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh-----CCCeEeec
Confidence            58888999999999999999986     33455554

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=6.3e-05  Score=70.34  Aligned_cols=44  Identities=25%  Similarity=0.282  Sum_probs=39.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ...+|-|.|++|+|||||.-.|+.++...|.+|+++-.||.-+.
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~   96 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV   96 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceee
Confidence            47899999999999999999999999999999999999998765

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.48  E-value=3.3e-05  Score=64.02  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=23.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ..+|+|+|+.||||||||+.|++++
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999999986

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.47  E-value=3.2e-05  Score=63.82  Aligned_cols=35  Identities=23%  Similarity=0.327  Sum_probs=28.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+.|+++|+.||||||+|+.|+..+   +.....+|.|
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l---~~~~~~~~~d   37 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVD   37 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc---CCCeEEeecc
Confidence            4689999999999999999999986   4455556655

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.46  E-value=2.7e-05  Score=64.49  Aligned_cols=35  Identities=23%  Similarity=0.309  Sum_probs=28.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      |..|++.|+.||||||+++.|+..+   +...+.+|.|
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~l---g~~~~~~~~d   38 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSD   38 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEecHH
Confidence            6689999999999999999987754   5566666665

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=9.5e-05  Score=68.51  Aligned_cols=41  Identities=32%  Similarity=0.425  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHHHHHH--cCCcEEEEcCC
Q 017141           34 TSPPPIAFICGAKNCGKTTFSRHLVNVLLQ--RYKKVAYLDTD   74 (376)
Q Consensus        34 ~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~--~~~~v~~lDlD   74 (376)
                      .+.+..|.|+|+.||||||||+.|...|.+  .+.+|.++.+|
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D  119 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD  119 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeee
Confidence            345678999999999999999999988754  35778888888

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.37  E-value=5.2e-05  Score=64.55  Aligned_cols=27  Identities=30%  Similarity=0.519  Sum_probs=24.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           35 SPPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        35 ~~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +++++|+|+|++||||||+|+.|++++
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999999999999986

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=6.6e-05  Score=61.92  Aligned_cols=26  Identities=19%  Similarity=0.349  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .++.++++|+.||||||+++.|+.++
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            46788899999999999999999987

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.36  E-value=4.2e-05  Score=64.05  Aligned_cols=31  Identities=42%  Similarity=0.759  Sum_probs=26.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .|+++|+.||||||+++.|++++     ..-|+|+|
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~L-----g~~~id~D   34 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARAL-----GYEFVDTD   34 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH-----TCEEEEHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh-----CCCEEehh
Confidence            36678999999999999999998     44588887

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=4e-05  Score=64.63  Aligned_cols=38  Identities=26%  Similarity=0.208  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      .|.+|+++|..||||||+++.|+.++-..+.....++.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~   55 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG   55 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhH
Confidence            46789999999999999999999998777666666554

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.33  E-value=4.8e-05  Score=63.35  Aligned_cols=31  Identities=32%  Similarity=0.528  Sum_probs=27.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .|+++|+.||||||+++.|+..+     ...|+|+|
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l-----~~~~~d~d   32 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL-----DLVFLDSD   32 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH-----TCEEEEHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh-----CCCEEecC
Confidence            47888999999999999999998     55688887

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.32  E-value=5.9e-05  Score=69.22  Aligned_cols=39  Identities=18%  Similarity=0.329  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +.|.|-|+|+.||||||+++.|.+.+-+.+.++++|..|
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~D   41 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD   41 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCC
Confidence            468999999999999999999999998888889999888

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.31  E-value=6.9e-05  Score=62.16  Aligned_cols=35  Identities=17%  Similarity=0.214  Sum_probs=30.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      +.|+|.|+.||||||+++.|+.++-..+.++.++.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~   36 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS   36 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEe
Confidence            47999999999999999999999987777766653

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.31  E-value=6e-05  Score=64.01  Aligned_cols=26  Identities=27%  Similarity=0.304  Sum_probs=24.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .|.+|+|.|+.||||||+|+.|++++
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999999997

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.30  E-value=6.5e-05  Score=62.06  Aligned_cols=26  Identities=23%  Similarity=0.308  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.+|+|+|+.||||||+|+.|+..+
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999999875

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.27  E-value=9e-05  Score=62.85  Aligned_cols=26  Identities=23%  Similarity=0.241  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.||+++||+||||||.|+.|+.++
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHh
Confidence            47799999999999999999999886

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.27  E-value=0.0001  Score=64.34  Aligned_cols=41  Identities=24%  Similarity=0.307  Sum_probs=36.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHHH-cCCcEEEEcCCC
Q 017141           35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQ-RYKKVAYLDTDV   75 (376)
Q Consensus        35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~-~~~~v~~lDlD~   75 (376)
                      .++..|.++|.+||||||+++.|..++.+ .+..+.++|.|-
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~   63 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN   63 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchH
Confidence            35789999999999999999999999875 467888999983

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.24  E-value=0.00017  Score=63.89  Aligned_cols=35  Identities=23%  Similarity=0.393  Sum_probs=27.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +.-||+.||+|+||||+++.|++.+   +.....++.|
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~---~~~~~~i~~d   66 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDND   66 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh---hcceEEEecH
Confidence            4458999999999999999999976   3445555553

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=8.8e-05  Score=62.98  Aligned_cols=25  Identities=28%  Similarity=0.515  Sum_probs=23.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      |++|+|.||+||||||.|+.|++++
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999999986

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.22  E-value=0.00015  Score=65.80  Aligned_cols=41  Identities=29%  Similarity=0.293  Sum_probs=36.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP   78 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~   78 (376)
                      .+|.|.|-=|+||||++-.|+-.|.+.|++|+++|+||.-+
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ~~   43 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKAD   43 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCCC
Confidence            46788896699999999999999999999999999999644

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.20  E-value=7.7e-05  Score=61.08  Aligned_cols=33  Identities=30%  Similarity=0.529  Sum_probs=25.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      +.|+|+|+.||||||+|+.|+..+    ....+++.|
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~----~~~~~~~~d   35 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL----DNSAYIEGD   35 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS----SSEEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc----CCCEEEehH
Confidence            468999999999999999998764    334555544

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.15  E-value=0.00012  Score=60.81  Aligned_cols=25  Identities=32%  Similarity=0.445  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      +|+|+|++|+|||||++.++..+-.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC
Confidence            7999999999999999999998743

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00013  Score=62.92  Aligned_cols=38  Identities=29%  Similarity=0.440  Sum_probs=30.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHc-----CCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQR-----YKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~-----~~~v~~lDlD   74 (376)
                      |-.|.|.|+.||||||||+.|...+-..     +..+.++.+|
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D   44 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQD   44 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEecc
Confidence            5678899999999999999999987443     2356676666

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.10  E-value=0.00029  Score=65.56  Aligned_cols=45  Identities=27%  Similarity=0.194  Sum_probs=41.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      ....+|-|.|++|+|||||.-.|+.++...|.+|+++-.||.-+.
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~   93 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTR   93 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGS
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHH
Confidence            347899999999999999999999999999999999999987664

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.09  E-value=0.00014  Score=58.84  Aligned_cols=33  Identities=21%  Similarity=0.444  Sum_probs=24.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ..|+|+|++||||||+++.|+.    .+....+++.|
T Consensus         3 klIii~G~pGsGKTTla~~L~~----~~~~~~~~~~d   35 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA----KNPGFYNINRD   35 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH----HSTTEEEECHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH----hCCCCEEechH
Confidence            3688999999999999987654    33445555554

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.05  E-value=0.0003  Score=61.39  Aligned_cols=57  Identities=14%  Similarity=0.143  Sum_probs=44.4

Q ss_pred             CChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        17 ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      +|-.|. .+|.+..++ -.++..++|.|++|+||||||..++..+++.+.+++|++++-
T Consensus         8 i~TG~~-~LD~~l~GG-i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~   64 (242)
T d1tf7a2           8 VSSGVV-RLDEMCGGG-FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEE   64 (242)
T ss_dssp             ECCSCH-HHHHHTTSS-EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             cCCCcH-HHHHhhcCC-CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccC
Confidence            444454 356655322 124679999999999999999999999999999999999863

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.03  E-value=0.00018  Score=60.07  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|+|+|++||||||.|+.|+.++
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999999999999986

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.98  E-value=0.00018  Score=61.24  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=27.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      ..++|+|+||+||||||.|+.|+.++     ...+++.
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~-----g~~~is~   39 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY-----SFVHLSA   39 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS-----SCEEEEH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh-----CCeEEeh
Confidence            36799999999999999999999876     4455554

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.97  E-value=0.00023  Score=59.88  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=22.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+|+|+|++||||||+|+.|+.++
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999999986

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.96  E-value=0.00023  Score=59.82  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|+|+|++||||||.|+.|+.++
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            69999999999999999999987

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.95  E-value=0.00014  Score=61.37  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=21.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+..|+++|.+||||||+++.|+.
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999997754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.95  E-value=0.00034  Score=58.01  Aligned_cols=34  Identities=18%  Similarity=0.278  Sum_probs=29.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      .|+|+|+.||||||+++.|+.+|-.+|..+..+.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~   36 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN   36 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            5678999999999999999999887777776554

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0005  Score=59.61  Aligned_cols=36  Identities=28%  Similarity=0.376  Sum_probs=32.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      |.-|.|.|+-||||||+++.|.++|-.+|.+|.+++
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~   38 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR   38 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            667888899999999999999999999999998875

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.89  E-value=0.00041  Score=60.35  Aligned_cols=27  Identities=30%  Similarity=0.373  Sum_probs=24.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      .+.+++.||+|+||||+++.+++.+..
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak~l~~   71 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALARELFG   71 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHh
Confidence            467999999999999999999998854

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.0003  Score=60.26  Aligned_cols=25  Identities=28%  Similarity=0.531  Sum_probs=23.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .|.|.|-||+||||||.|+.|++++
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            5799999999999999999999997

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.87  E-value=0.00024  Score=60.68  Aligned_cols=25  Identities=32%  Similarity=0.303  Sum_probs=23.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ..+|+|+|++||||||+|+.|+.++
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999999999874

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.83  E-value=0.00066  Score=58.18  Aligned_cols=49  Identities=20%  Similarity=0.274  Sum_probs=37.2

Q ss_pred             HHHhhccCCCCCCCEEEEEcCCCCcHHHHHHH-HHHHHHHcCCcEEEEcCC
Q 017141           25 ADSIAYDSNTSPPPIAFICGAKNCGKTTFSRH-LVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        25 ~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~-L~N~ll~~~~~v~~lDlD   74 (376)
                      +|.+...+ -..+..++|.|++|+|||+||.. ++|.+++.+.+++|++++
T Consensus        15 LD~~l~GG-i~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e   64 (242)
T d1tf7a1          15 FDDISHGG-LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE   64 (242)
T ss_dssp             HHHHTTSS-EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             HHHhhcCC-CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCccccccc
Confidence            45444322 12478999999999999999965 566777888899998886

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.81  E-value=0.00053  Score=62.59  Aligned_cols=38  Identities=29%  Similarity=0.531  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHc---CCcEEEEcCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQR---YKKVAYLDTD   74 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~---~~~v~~lDlD   74 (376)
                      +-.|-|.|+.||||||||+.|..+|.++   ...|+++-+|
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~D   67 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASID   67 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGG
T ss_pred             CEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccC
Confidence            4577799999999999999999999875   2457777666

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.80  E-value=0.00037  Score=58.35  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|+|.|++||||||.|+.|++++
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999999999999987

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.77  E-value=0.00064  Score=57.85  Aligned_cols=34  Identities=26%  Similarity=0.313  Sum_probs=30.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      .|.|.|.-||||||+++.|.++|-.+|..|.++.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~   35 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA   35 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence            4789999999999999999999988898887764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.00038  Score=58.18  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|+|+|++||||||.|+.|+.++
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            78999999999999999999876

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.73  E-value=0.00039  Score=59.02  Aligned_cols=26  Identities=27%  Similarity=0.442  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .++.|+|.||+||||||.|+.|+.++
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999998864

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.65  E-value=0.0013  Score=57.11  Aligned_cols=35  Identities=31%  Similarity=0.375  Sum_probs=32.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      ++|.|++|+|||.|++.++|.+.+.+..+.|+++.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~   73 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD   73 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechH
Confidence            88999999999999999999999999988887653

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.54  E-value=0.0013  Score=58.50  Aligned_cols=39  Identities=21%  Similarity=0.186  Sum_probs=33.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHH-HHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLV-NVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~-N~ll~~~~~v~~lDlD   74 (376)
                      +|..++|.|++|+|||||+..++ |.+.+.|.+|+|+.++
T Consensus        34 ~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E   73 (277)
T d1cr2a_          34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (277)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeec
Confidence            47799999999999999999998 4556789999998776

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.51  E-value=0.0018  Score=57.43  Aligned_cols=41  Identities=12%  Similarity=0.179  Sum_probs=29.0

Q ss_pred             hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++...++.+..+. ..+...||+.||+|+|||+++|.+++.+
T Consensus        24 ~~~~~~~~~~~~~-~~p~~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          24 DGELLVQQTKNSD-RTPLVSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             HHHHHHHHHHHCS-SCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccC-CCCCeEEEEECcCCCCHHHHHHHHhhcc
Confidence            4444444443322 2334569999999999999999999975

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.50  E-value=0.00077  Score=58.74  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=23.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+-+|+.||+|+||||+||.|++.+
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~~   59 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASEL   59 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhcc
Confidence            5679999999999999999999986

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.0012  Score=57.74  Aligned_cols=35  Identities=20%  Similarity=0.158  Sum_probs=28.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      ..+.+++.||+|+||||+++.|++.+   +..+..+++
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~---~~~~~~~~~   85 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNA   85 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH---Hhhhhcccc
Confidence            35689999999999999999999986   445555555

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.49  E-value=0.00073  Score=54.37  Aligned_cols=21  Identities=29%  Similarity=0.306  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ||+|+|++|||||||.+.|++
T Consensus         2 kivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            799999999999999988764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.44  E-value=0.0022  Score=55.88  Aligned_cols=27  Identities=30%  Similarity=0.287  Sum_probs=24.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      .++.++|.|++|+||||++|.|++.+-
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            467899999999999999999999884

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.0017  Score=58.38  Aligned_cols=39  Identities=26%  Similarity=0.399  Sum_probs=36.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+..+.|.|+.++||||||-.++..+.+.+..|+|+|.-
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE   91 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE   91 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence            367999999999999999999999999999999999985

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.40  E-value=0.0011  Score=57.34  Aligned_cols=45  Identities=36%  Similarity=0.338  Sum_probs=31.7

Q ss_pred             CChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141           17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR   64 (376)
Q Consensus        17 ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~   64 (376)
                      ..++-.+.+.....+.   .-+.+++.||+|+||||+++.|++.+...
T Consensus        19 g~~~~~~~L~~~~~~~---~~~~~ll~Gp~G~GKTt~a~~la~~l~~~   63 (224)
T d1sxjb2          19 GNKETIDRLQQIAKDG---NMPHMIISGMPGIGKTTSVHCLAHELLGR   63 (224)
T ss_dssp             SCTHHHHHHHHHHHSC---CCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred             CCHHHHHHHHHHHHcC---CCCeEEEECCCCCCchhhHHHHHHHHhcc
Confidence            3344445555444332   23568999999999999999999998644

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.35  E-value=0.00072  Score=57.14  Aligned_cols=23  Identities=35%  Similarity=0.605  Sum_probs=21.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -|+|.|+|.+|+|||||.+.|++
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHhcC
Confidence            46899999999999999999985

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.34  E-value=0.0011  Score=57.74  Aligned_cols=26  Identities=27%  Similarity=0.428  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ..+.+|+.||+|+||||+++.+++.+
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            35779999999999999999999875

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.0019  Score=55.31  Aligned_cols=34  Identities=26%  Similarity=0.171  Sum_probs=28.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      |.-|.|-|.-||||||+++.|.++|-..|.+..+
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~   35 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMV   35 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence            4568889999999999999999999888765433

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.32  E-value=0.004  Score=59.15  Aligned_cols=96  Identities=17%  Similarity=0.219  Sum_probs=60.9

Q ss_pred             CCccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecc
Q 017141           13 PAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVD   92 (376)
Q Consensus        13 ~~~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~   92 (376)
                      ..+.++++=.+.++.+..    .+...|+|+||+||||||....+++++-+.++++.-++ ||  .|+..||.....+..
T Consensus       138 ~~LG~~~~~~~~l~~l~~----~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiE-dP--iE~~~~~~~q~~v~~  210 (401)
T d1p9ra_         138 HSLGMTAHNHDNFRRLIK----RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE-DP--IEFDIDGIGQTQVNP  210 (401)
T ss_dssp             GGSCCCHHHHHHHHHHHT----SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE-SS--CCSCCSSSEEEECBG
T ss_pred             hhhcccHHHHHHHHHHHh----hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEec-cC--cccccCCCCeeeecC
Confidence            345566544444444442    12468999999999999999999999876667787777 66  577788887654433


Q ss_pred             cCCCCCCCC---CC-CCCceeEEcCCCC
Q 017141           93 TLTPDLTIP---CL-KTPKRCYFFGDVS  116 (376)
Q Consensus        93 ~~~~~~~~~---~~-~~p~~~~f~G~~s  116 (376)
                      .-..+|..-   .+ ..| ...++|...
T Consensus       211 ~~~~~~~~~l~~~lR~dP-Dvi~igEiR  237 (401)
T d1p9ra_         211 RVDMTFARGLRAILRQDP-DVVMVGEIR  237 (401)
T ss_dssp             GGTBCHHHHHHHHGGGCC-SEEEESCCC
T ss_pred             CcCCCHHHHHHHHHhhcC-CEEEecCcC
Confidence            222222100   01 134 357888763

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.28  E-value=0.0012  Score=52.96  Aligned_cols=21  Identities=38%  Similarity=0.453  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ||+++|+.|+|||||...|.+
T Consensus         2 KI~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            799999999999999987776

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0026  Score=54.73  Aligned_cols=140  Identities=9%  Similarity=0.009  Sum_probs=72.3

Q ss_pred             hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCC
Q 017141           19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDL   98 (376)
Q Consensus        19 ~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~   98 (376)
                      +-|++..+.+..+.   .+..+|+.|++|+||||+++.++++++....          +..-..--|.++..+...    
T Consensus         9 ~~~~~l~~~~~~~~---l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~----------~~~~~~~~~~~~~~i~~~----   71 (207)
T d1a5ta2           9 PDFEKLVASYQAGR---GHHALLIQALPGMGDDALIYALSRYLLCQQP----------QGHKSCGHCRGCQLMQAG----   71 (207)
T ss_dssp             HHHHHHHHHHHTTC---CCSEEEEECCTTSCHHHHHHHHHHHHTCSSC----------BTTBCCSCSHHHHHHHHT----
T ss_pred             HHHHHHHHHHHcCC---cCeEEEEECCCCCcHHHHHHHHHHhcccccc----------cccccccccchhhhhhhc----
Confidence            34566666555322   3556999999999999999999999863221          111000001111122221    


Q ss_pred             CCCCCCCCceeEEcCCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccccccHHHHHHHHHHh
Q 017141           99 TIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYI  178 (376)
Q Consensus        99 ~~~~~~~p~~~~f~G~~sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~G~~ll~~~i~~~  178 (376)
                           ..+....+.......   ....+.+.++.+.....    .    .......+|||=.-.+...+..-|..+++.-
T Consensus        72 -----~~~~~~~~~~~~~~~---~i~~~~ir~l~~~~~~~----~----~~~~~kviIide~d~l~~~a~n~Llk~lEep  135 (207)
T d1a5ta2          72 -----THPDYYTLAPEKGKN---TLGVDAVREVTEKLNEH----A----RLGGAKVVWVTDAALLTDAAANALLKTLEEP  135 (207)
T ss_dssp             -----CCTTEEEECCCTTCS---SBCHHHHHHHHHHTTSC----C----TTSSCEEEEESCGGGBCHHHHHHHHHHHTSC
T ss_pred             -----cccccchhhhhhccc---ccccchhhHHhhhhhhc----c----ccCccceEEechhhhhhhhhhHHHHHHHHhh
Confidence                 112233343332211   12244555554432111    0    0113335777766555555666777788877


Q ss_pred             CCCEEEEEecCcc
Q 017141          179 TPTHVVKINISFE  191 (376)
Q Consensus       179 ~p~~Vv~l~~~~~  191 (376)
                      ..+.++++-.+..
T Consensus       136 ~~~~~fIl~t~~~  148 (207)
T d1a5ta2         136 PAETWFFLATREP  148 (207)
T ss_dssp             CTTEEEEEEESCG
T ss_pred             cccceeeeeecCh
Confidence            6777777665443

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.21  E-value=0.0033  Score=54.76  Aligned_cols=26  Identities=31%  Similarity=0.477  Sum_probs=22.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      .|+|.|+|..|+|||||...|+....
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~~~~   30 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRGSAV   30 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCccHHHHHHHHHhhcc
Confidence            57899999999999999998887654

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.0017  Score=56.62  Aligned_cols=32  Identities=19%  Similarity=0.204  Sum_probs=26.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcE
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKV   68 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v   68 (376)
                      .+.+++.||+|+||||++|.+++.+.......
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~   64 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLESIFGPGVYR   64 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhhcCccccc
Confidence            56799999999999999999999885444333

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.0017  Score=55.98  Aligned_cols=26  Identities=23%  Similarity=0.295  Sum_probs=23.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      .+.+++.||+|+||||+++.+++.+.
T Consensus        35 ~~~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          35 LPHLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHhh
Confidence            35689999999999999999999874

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.17  E-value=0.0034  Score=54.11  Aligned_cols=27  Identities=26%  Similarity=0.295  Sum_probs=24.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      .+.+++.||+|+||||+++.+++.+..
T Consensus        33 ~~~lll~Gp~G~GKTtl~~~i~~~l~~   59 (237)
T d1sxjd2          33 LPHMLFYGPPGTGKTSTILALTKELYG   59 (237)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCChHHHHHHHHHHHcC
Confidence            456999999999999999999998753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.17  E-value=0.0036  Score=54.44  Aligned_cols=50  Identities=20%  Similarity=0.273  Sum_probs=36.1

Q ss_pred             HHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           23 DAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        23 ~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      +.++++...    .++.|+|.|++|+|||||++.+++.+   +....++++...+..
T Consensus        19 ~el~~l~~~----~~~~i~i~G~~G~GKTsLl~~~~~~~---~~~~~~i~~~~~~~~   68 (283)
T d2fnaa2          19 KEIEKLKGL----RAPITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLRKFEER   68 (283)
T ss_dssp             HHHHHHHHT----CSSEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGGGGTTC
T ss_pred             HHHHHHHhc----cCCEEEEEcCCCCcHHHHHHHHHHHC---CCCeEEEEecccccc
Confidence            445555432    24689999999999999999887765   567788887655443

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.11  E-value=0.0016  Score=52.62  Aligned_cols=23  Identities=30%  Similarity=0.262  Sum_probs=20.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .-+|+++|..|+|||||.+.+++
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999988765

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.11  E-value=0.0017  Score=54.25  Aligned_cols=25  Identities=24%  Similarity=0.407  Sum_probs=21.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      |..|+|+||.||||||+++.|....
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            5689999999999999999887664

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0032  Score=56.18  Aligned_cols=25  Identities=20%  Similarity=0.395  Sum_probs=22.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +.-+|+.||+|+|||++++.+++.+
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHc
Confidence            4569999999999999999999886

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.11  E-value=0.0017  Score=56.98  Aligned_cols=24  Identities=25%  Similarity=0.225  Sum_probs=21.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      ++++|++|+||||++|.+++.+-+
T Consensus        49 l~l~GppGtGKT~l~~~l~~~l~~   72 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKRVSE   72 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHHHh
Confidence            456799999999999999999864

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.10  E-value=0.0016  Score=55.11  Aligned_cols=23  Identities=35%  Similarity=0.561  Sum_probs=19.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -|+|+|+|..|+|||||...|++
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~   25 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTT   25 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            47999999999999998766654

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.08  E-value=0.002  Score=55.14  Aligned_cols=24  Identities=21%  Similarity=0.265  Sum_probs=21.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+|.|-||.||||||.|+.|+..+
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            467788999999999999999997

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.0013  Score=53.30  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=19.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      |-+|+++|.+|+|||||.+.|++
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999998876663

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.98  E-value=0.0016  Score=53.48  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=20.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|||||||...|.+
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            57999999999999999987765

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.96  E-value=0.0021  Score=56.13  Aligned_cols=41  Identities=29%  Similarity=0.497  Sum_probs=33.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE   79 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~   79 (376)
                      =|.++|.|--|||||||.+.|++.  ..+++++++--|-|+..
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~--~~~~riaVI~Ne~g~~~   43 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFGEVS   43 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS--CCCCCEEEECSSCCSCC
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhc--CCCCcEEEEEecccchh
Confidence            478999999999999998777764  45789999988876644

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.93  E-value=0.003  Score=56.04  Aligned_cols=33  Identities=18%  Similarity=0.253  Sum_probs=26.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      +.-||+.||+|+|||++++.+++.+   +..++.+|
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~---~~~~~~i~   74 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEA---RVPFITAS   74 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred             CceEEEecCCCCChhHHHHHHHHHc---CCCEEEEE
Confidence            4569999999999999999999865   45555543

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.0019  Score=57.37  Aligned_cols=26  Identities=19%  Similarity=0.324  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|.+|.|+|+.|||||||++.|+..+
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            47899999999999999999988864

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.87  E-value=0.0046  Score=55.65  Aligned_cols=39  Identities=26%  Similarity=0.302  Sum_probs=35.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+..+.+.|+.++||||||..++..+.+.+..|+|+|.-
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE   97 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAE   97 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence            478999999999999999999999999999999999873

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.87  E-value=0.0016  Score=53.20  Aligned_cols=22  Identities=27%  Similarity=0.372  Sum_probs=19.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|.+|+|||||.+.|.+
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHcC
Confidence            4899999999999999987753

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.85  E-value=0.0024  Score=53.28  Aligned_cols=21  Identities=33%  Similarity=0.499  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +|+|+|..|||||||+..|++
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            799999999999999987765

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.78  E-value=0.0028  Score=54.30  Aligned_cols=35  Identities=14%  Similarity=0.023  Sum_probs=29.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      .+..++|.|+.|+||||||..++..++..+..+.+
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~~~~~~~~~~~   67 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYD   67 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECC
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCCceE
Confidence            46799999999999999999999888776655544

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.77  E-value=0.0014  Score=55.12  Aligned_cols=26  Identities=31%  Similarity=0.419  Sum_probs=22.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+..|.|.|+-||||||+++.|..++
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            46689999999999999999988765

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.74  E-value=0.0021  Score=55.23  Aligned_cols=27  Identities=19%  Similarity=0.214  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      .+..++|.|++||||||||..++..++
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~~~   59 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVTCQ   59 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            477999999999999999998876554

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.74  E-value=0.0024  Score=57.09  Aligned_cols=26  Identities=15%  Similarity=0.280  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++.++.|+|+.|||||||++.|+...
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhccc
Confidence            47899999999999999999987654

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.73  E-value=0.0058  Score=54.93  Aligned_cols=39  Identities=26%  Similarity=0.331  Sum_probs=36.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .+..+.|.|+.++||||||..++..+.+.+..|+|+|.-
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE   94 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE   94 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence            367999999999999999999999999999999999985

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.70  E-value=0.0041  Score=55.31  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=22.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +.-||+.||+|+|||++++.+++.+
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceeEEecCCCCCchHHHHHHHHHh
Confidence            4569999999999999999999975

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.68  E-value=0.0031  Score=51.91  Aligned_cols=22  Identities=32%  Similarity=0.437  Sum_probs=19.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|..|+|||||.+.|++
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            3799999999999999988765

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.003  Score=52.13  Aligned_cols=21  Identities=19%  Similarity=0.324  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +|+|+|.+|+|||||.+.+++
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            799999999999999887665

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.68  E-value=0.0025  Score=56.58  Aligned_cols=35  Identities=20%  Similarity=0.251  Sum_probs=26.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      ++.++.|+|+.|||||||++.|+...--...++.+
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i   61 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI   61 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEE
Confidence            47899999999999999999887654223334544

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.66  E-value=0.0024  Score=52.53  Aligned_cols=22  Identities=36%  Similarity=0.533  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +|.|+|..|+|||||.+.|++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988753

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.65  E-value=0.005  Score=56.23  Aligned_cols=26  Identities=27%  Similarity=0.506  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++..+|++||+|||||++||.|++.+
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhcc
Confidence            35679999999999999999999986

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0028  Score=56.56  Aligned_cols=26  Identities=27%  Similarity=0.494  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +|..+.|+|+.|||||||++.|+...
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhccc
Confidence            47899999999999999999887754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.65  E-value=0.0032  Score=51.43  Aligned_cols=22  Identities=14%  Similarity=0.277  Sum_probs=19.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+++|..|+|||||...|++
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999987664

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.65  E-value=0.0024  Score=55.61  Aligned_cols=29  Identities=21%  Similarity=0.406  Sum_probs=24.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      .|-|+|+.||||||+|++|.+..     ...++|
T Consensus         3 iIgiTG~igSGKsTva~~l~e~~-----g~~~i~   31 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSNY-----SAVKYQ   31 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS-----CEEECC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC-----CCeEEc
Confidence            68899999999999999997752     456776

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0031  Score=51.91  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=19.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|..|+|||||.+.|++
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999988775

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0033  Score=51.84  Aligned_cols=21  Identities=19%  Similarity=0.384  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +|+|+|.+|+|||||...|++
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            799999999999999977765

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.61  E-value=0.0046  Score=53.46  Aligned_cols=39  Identities=23%  Similarity=0.351  Sum_probs=29.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHc------CCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR------YKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~------~~~v~~lDlD   74 (376)
                      .+..++|.|++|+|||||+..++..+++.      +..+.|++..
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~   79 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE   79 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEecc
Confidence            46799999999999999999888777643      3445555553

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.60  E-value=0.0034  Score=51.61  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=19.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+|+|..|+|||||.+.|++
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            3799999999999999988765

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.0026  Score=54.56  Aligned_cols=30  Identities=23%  Similarity=0.409  Sum_probs=23.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .|-|+|+.||||||+|++|..    .|  ..++|+|
T Consensus         5 iIgitG~igSGKStv~~~l~~----~G--~~vidaD   34 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD----LG--INVIDAD   34 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH----TT--CEEEEHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH----CC--CcEEEch
Confidence            677999999999999998743    34  4567776

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.0041  Score=53.52  Aligned_cols=24  Identities=13%  Similarity=0.354  Sum_probs=21.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      |..|+|+||.||||||+.+.|+..
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999999988876

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0027  Score=52.99  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=19.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+|+|..|+|||||++.|++
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            3799999999999999877654

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.57  E-value=0.0044  Score=58.12  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=27.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      .++.+++.||+|+||||||+.|++.+   +.+++.++
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~---~~~~i~in  186 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN  186 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEE
Confidence            45689999999999999999999998   44444443

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0035  Score=51.79  Aligned_cols=22  Identities=14%  Similarity=0.262  Sum_probs=19.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|..|+|||||.+.+++
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3799999999999999987765

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.0052  Score=58.01  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=31.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      -++|+|++|||||++.+.++..+++.+..++++|.
T Consensus        52 H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~   86 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP   86 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             eEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            38999999999999999999999999998888865

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.54  E-value=0.0038  Score=50.82  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=19.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+|+|..|+|||||.+.+++
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3799999999999999998775

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.53  E-value=0.0035  Score=52.57  Aligned_cols=23  Identities=35%  Similarity=0.387  Sum_probs=19.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +..|-|+|+.||||||+|++|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45677999999999999998753

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.52  E-value=0.0046  Score=48.82  Aligned_cols=39  Identities=10%  Similarity=0.086  Sum_probs=35.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEcCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTD   74 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~lDlD   74 (376)
                      +|-.|++.|-.+|||||+++.|...|++.  ++.|-++|-|
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~   45 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN   45 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCC
Confidence            57899999999999999999999999984  5889999888

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.51  E-value=0.0037  Score=52.56  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 017141           40 AFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      |+|+||.||||+|+++.|++..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999988764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.51  E-value=0.0038  Score=51.35  Aligned_cols=22  Identities=14%  Similarity=0.365  Sum_probs=19.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|..|+|||||++.+++
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4899999999999999887764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.003  Score=51.69  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+|+|..|+|||||.+.|++
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            46899999999999999988765

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.48  E-value=0.0043  Score=54.67  Aligned_cols=41  Identities=15%  Similarity=0.253  Sum_probs=29.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      +|..+.++||.|||||||.|.++--.--....+.+-+-|+.
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~   65 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN   65 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECC
Confidence            47799999999999999999776543223345655555553

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.48  E-value=0.0041  Score=52.57  Aligned_cols=22  Identities=23%  Similarity=0.440  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 017141           40 AFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      |+|+||.||||||+++.|+...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7799999999999999998876

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.48  E-value=0.0031  Score=51.58  Aligned_cols=24  Identities=29%  Similarity=0.319  Sum_probs=20.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +..||+++|..|+|||||...|..
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            367999999999999999877643

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0038  Score=51.05  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=19.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+|+|..++|||||...|++
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999988775

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.47  E-value=0.0031  Score=58.27  Aligned_cols=47  Identities=15%  Similarity=0.304  Sum_probs=33.1

Q ss_pred             hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141           19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL   71 (376)
Q Consensus        19 ~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l   71 (376)
                      +++...+......     +..|+|+|+.|||||||.+.|+++. ....++..+
T Consensus       153 ~~~~~~l~~~v~~-----~~nili~G~tgSGKTT~l~al~~~i-~~~~rivti  199 (323)
T d1g6oa_         153 EQAISAIKDGIAI-----GKNVIVCGGTGSGKTTYIKSIMEFI-PKEERIISI  199 (323)
T ss_dssp             HHHHHHHHHHHHH-----TCCEEEEESTTSSHHHHHHHHGGGS-CTTCCEEEE
T ss_pred             HHHHHHHHHHHHh-----CCCEEEEeeccccchHHHHHHhhhc-ccccceeec
Confidence            4555555554432     3469999999999999999999875 344555555

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.47  E-value=0.0041  Score=50.89  Aligned_cols=22  Identities=18%  Similarity=0.315  Sum_probs=19.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+|+|..|+|||||.+.|++
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999988775

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0042  Score=50.77  Aligned_cols=22  Identities=18%  Similarity=0.366  Sum_probs=19.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+|+|..|+|||||.+.|++
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999887765

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.43  E-value=0.004  Score=50.83  Aligned_cols=21  Identities=19%  Similarity=0.370  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +|+|+|..|+|||||.+.|++
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            799999999999999987765

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.43  E-value=0.0028  Score=54.49  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=26.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|||||||.+.++..+--...++.+
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~   60 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY   60 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcccccCCCEEEE
Confidence            46789999999999999999998865333334443

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0041  Score=51.12  Aligned_cols=22  Identities=14%  Similarity=0.348  Sum_probs=20.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+|+|.+|+|||||.+.+++
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5899999999999999998875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0042  Score=50.97  Aligned_cols=22  Identities=18%  Similarity=0.291  Sum_probs=19.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+|+|..|+|||||.+.|++
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999988876

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.42  E-value=0.0042  Score=56.28  Aligned_cols=25  Identities=20%  Similarity=0.286  Sum_probs=22.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +|..+.|+|+.|||||||.+.|+..
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCC
Confidence            5789999999999999999998764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.40  E-value=0.0039  Score=51.73  Aligned_cols=23  Identities=30%  Similarity=0.400  Sum_probs=20.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +.+|.|+|..|+|||||...|++
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            57999999999999999987765

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.0043  Score=50.46  Aligned_cols=21  Identities=19%  Similarity=0.349  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +|+|+|..|+|||||.+.|++
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            799999999999999998775

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.0043  Score=51.18  Aligned_cols=22  Identities=14%  Similarity=0.383  Sum_probs=19.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|..|+|||||.+.|++
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4899999999999999987764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.0045  Score=51.24  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=19.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+|+|..|+|||||.+.|++
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999987765

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.37  E-value=0.0053  Score=54.85  Aligned_cols=26  Identities=27%  Similarity=0.552  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+.-||+.||+|+|||+|++.+++.+
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHh
Confidence            35579999999999999999999987

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0046  Score=50.53  Aligned_cols=22  Identities=18%  Similarity=0.252  Sum_probs=19.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|..++|||||.+.+++
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3799999999999999887765

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.0036  Score=51.98  Aligned_cols=39  Identities=18%  Similarity=0.164  Sum_probs=29.1

Q ss_pred             HHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           24 AADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        24 ~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      .+|.+...+ -.++..++|.|++|+||||||..++..++.
T Consensus        11 ~LD~ll~GG-i~~G~v~~i~G~~GsGKT~l~l~la~~~~~   49 (242)
T d1n0wa_          11 ELDKLLQGG-IETGSITEMFGEFRTGKTQICHTLAVTCQL   49 (242)
T ss_dssp             HHHHHTTTS-EETTSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred             HHHHhhcCC-CcCCEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            345555322 224789999999999999999999877654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.35  E-value=0.0047  Score=50.37  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=18.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+++|++|+|||||...|.+
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            3799999999999999877654

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.35  E-value=0.0087  Score=52.88  Aligned_cols=54  Identities=15%  Similarity=0.147  Sum_probs=37.5

Q ss_pred             ChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           18 PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        18 p~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      .+.|+++.+.+..-+..  ..-|+|.|++|+||+++||.|.++.-........+|+
T Consensus         6 S~~~~~~~~~~~~~a~~--~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~   59 (247)
T d1ny5a2           6 SPKMKEILEKIKKISCA--ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNV   59 (247)
T ss_dssp             SHHHHHHHHHHHHHTTC--CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEET
T ss_pred             CHHHHHHHHHHHHHhCC--CCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchh
Confidence            34688888877643322  2348999999999999999998865444444444444

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.34  E-value=0.0032  Score=51.99  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .|+++|.+|+|||||...|++
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999888765

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.32  E-value=0.0032  Score=53.85  Aligned_cols=30  Identities=30%  Similarity=0.428  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD   74 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD   74 (376)
                      .|-|+|+.||||||+|++|..    .  ...++|+|
T Consensus         4 iIgITG~igSGKStv~~~l~~----~--G~~vidaD   33 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD----L--GVPLVDAD   33 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT----T--TCCEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH----C--CCeEEEch
Confidence            577999999999999987743    2  34566777

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.29  E-value=0.011  Score=52.07  Aligned_cols=27  Identities=11%  Similarity=0.234  Sum_probs=23.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      +..++|+|+.|+|||||+..|+-.+..
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~ia~   55 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQIAG   55 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHc
Confidence            568999999999999999999876553

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.0051  Score=50.28  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=19.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+|+|..|+|||||.+.+++
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3799999999999999988764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.0042  Score=50.87  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=18.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+|+|..|+|||||.+.|++
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3799999999999999877654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0044  Score=50.91  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +|+|+|..|+|||||++.|.+.
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCcCHHHHHHHHhCC
Confidence            7999999999999998877653

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0043  Score=53.74  Aligned_cols=26  Identities=31%  Similarity=0.364  Sum_probs=23.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      |..|.|-|.-||||||+++.|.+++-
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHh
Confidence            56899999999999999999999873

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.22  E-value=0.0027  Score=52.15  Aligned_cols=23  Identities=26%  Similarity=0.277  Sum_probs=19.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .++|.++|..|+|||||.+.|.+
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            68999999999999998876643

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.19  E-value=0.0043  Score=51.31  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=19.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +.|+|+|..|+|||||.+.|++
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4799999999999999988764

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.19  E-value=0.0029  Score=56.59  Aligned_cols=40  Identities=10%  Similarity=0.076  Sum_probs=28.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      ++.++.|+|+.|||||||++.|+...--...++.+=+.|+
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i   82 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI   82 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEG
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEc
Confidence            4789999999999999999988764322233455533344

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.18  E-value=0.0057  Score=54.11  Aligned_cols=25  Identities=28%  Similarity=0.503  Sum_probs=22.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +|-.+-++|+.|||||||.|.++.-
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcC
Confidence            4779999999999999999988754

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.17  E-value=0.0046  Score=54.33  Aligned_cols=35  Identities=17%  Similarity=0.236  Sum_probs=26.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      ++-.+.++|+.|||||||.|.|+.-.--...++.+
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~   59 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL   59 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEE
Confidence            47799999999999999999998854222234444

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.14  E-value=0.0052  Score=54.01  Aligned_cols=25  Identities=20%  Similarity=0.231  Sum_probs=21.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +|-.+.|+|+.|||||||.+.++.-
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCcchhhHhccCC
Confidence            4779999999999999999976653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.12  E-value=0.006  Score=51.61  Aligned_cols=21  Identities=24%  Similarity=0.355  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .|+|+|+.|+|||||.+.|++
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            699999999999999777765

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.0058  Score=50.25  Aligned_cols=22  Identities=14%  Similarity=0.306  Sum_probs=18.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+|+|..|||||||.+.|++
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999998877653

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.11  E-value=0.0057  Score=51.50  Aligned_cols=22  Identities=14%  Similarity=0.240  Sum_probs=19.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|..|||||||.+.|++
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhh
Confidence            4799999999999999987764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.0062  Score=49.93  Aligned_cols=22  Identities=18%  Similarity=0.268  Sum_probs=19.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+|+|..|+|||||.+.+++
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999988776

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.07  E-value=0.0053  Score=50.35  Aligned_cols=22  Identities=32%  Similarity=0.466  Sum_probs=19.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLV   58 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~   58 (376)
                      ..+|+|+|..|+|||||.+.|.
T Consensus        16 ~~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          16 EVRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEEECCCCCCHHHHHHHHh
Confidence            5699999999999999987663

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.04  E-value=0.0054  Score=54.25  Aligned_cols=25  Identities=28%  Similarity=0.307  Sum_probs=22.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +|..+.|+|+.|||||||+|.+.--
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          30 AGQIYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             SSCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            4779999999999999999988663

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0066  Score=49.73  Aligned_cols=22  Identities=18%  Similarity=0.277  Sum_probs=19.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+|+|..++|||||.+.+++
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999887654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0065  Score=50.46  Aligned_cols=22  Identities=18%  Similarity=0.206  Sum_probs=19.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+|+|..|+|||||.+.|++
T Consensus         6 iKivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4899999999999999988765

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.0068  Score=49.49  Aligned_cols=22  Identities=18%  Similarity=0.350  Sum_probs=19.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+|+|..|+|||||.+.+++
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            4799999999999999988765

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.0084  Score=51.56  Aligned_cols=38  Identities=21%  Similarity=0.133  Sum_probs=28.7

Q ss_pred             HHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           25 ADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        25 ~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      +|.+...+ -.++..++|.|++|+|||+||..++.....
T Consensus        26 LD~~lgGG-ip~G~~~~i~G~~GsGKT~lalq~~~~~~~   63 (258)
T d1v5wa_          26 FDKLLGGG-IESMAITEAFGEFRTGKTQLSHTLCVTAQL   63 (258)
T ss_dssp             HHHHTTSS-BCSSEEEEEECCTTCTHHHHHHHHHHHTTS
T ss_pred             HHHhhcCC-CcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            45444322 234779999999999999999999987654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0069  Score=50.51  Aligned_cols=23  Identities=22%  Similarity=0.219  Sum_probs=19.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      -+|+|+|..|+|||||.+.|++.
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhhC
Confidence            47999999999999998777653

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.93  E-value=0.018  Score=50.12  Aligned_cols=27  Identities=26%  Similarity=0.336  Sum_probs=24.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      +..+|+.|++|+||||++|.+++.+..
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            456899999999999999999999853

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.0073  Score=49.37  Aligned_cols=22  Identities=18%  Similarity=0.288  Sum_probs=19.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+|+|..|+|||||...+++
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999887654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.025  Score=48.21  Aligned_cols=44  Identities=14%  Similarity=0.154  Sum_probs=33.5

Q ss_pred             cCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           16 YIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        16 ~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      .--++-+++++.++..    ....++++|++|+|||+++.-|+.++.+
T Consensus        26 gRd~Ei~~l~~iL~r~----~k~n~lLvG~pGVGKTalv~~LA~ri~~   69 (195)
T d1jbka_          26 GRDEEIRRTIQVLQRR----TKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             SCHHHHHHHHHHHTSS----SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHhcc----CCCCeEEEecCCcccHHHHHHHHHHHHh
Confidence            3344566666666532    2357899999999999999999999876

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0075  Score=49.73  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=19.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+|+|+|..|+|||||.+.+++
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999877665

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.85  E-value=0.0086  Score=52.87  Aligned_cols=40  Identities=25%  Similarity=0.363  Sum_probs=27.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      ++..+-++|+.|||||||.|.++...--...+|.+-+-|+
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i   70 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV   70 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceec
Confidence            4779999999999999999977765422223454433333

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.0061  Score=49.97  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=19.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..|+|+|..|+|||||.+.|++
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3589999999999999998875

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.79  E-value=0.0052  Score=54.43  Aligned_cols=35  Identities=23%  Similarity=0.247  Sum_probs=26.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +|..+.|+|+.|||||||.|.+....--...++.|
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~   64 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF   64 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEE
Confidence            47899999999999999999998854222234444

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.74  E-value=0.0078  Score=53.74  Aligned_cols=24  Identities=29%  Similarity=0.394  Sum_probs=21.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +|..+-|+|+.|||||||+|.|+.
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHc
Confidence            478999999999999999999875

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.69  E-value=0.026  Score=46.98  Aligned_cols=48  Identities=19%  Similarity=0.090  Sum_probs=31.4

Q ss_pred             cCChhHH-HHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH-cCCcEEE
Q 017141           16 YIPREWS-DAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ-RYKKVAY   70 (376)
Q Consensus        16 ~ip~~W~-~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~-~~~~v~~   70 (376)
                      .-|.+|+ ++++.+..       ..++|++|+|+|||..+-+++-+.++ .+.+++|
T Consensus         8 ~~pr~~Q~~~~~~~~~-------~n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~   57 (200)
T d1wp9a1           8 IQPRIYQEVIYAKCKE-------TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLM   57 (200)
T ss_dssp             HCCCHHHHHHHHHGGG-------SCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEE
T ss_pred             CCCCHHHHHHHHHHhc-------CCeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEE
Confidence            4578888 44554432       23789999999999876666654444 4455544

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.67  E-value=0.027  Score=50.37  Aligned_cols=46  Identities=20%  Similarity=0.227  Sum_probs=34.8

Q ss_pred             ccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141           15 IYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR   64 (376)
Q Consensus        15 ~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~   64 (376)
                      +.--++-+++++.+++.    ....++++|++|+|||++++-|+.++.+.
T Consensus        21 igRd~Ei~~l~~iL~r~----~k~n~lLVG~~GvGKTalv~~la~ri~~~   66 (268)
T d1r6bx2          21 IGREKELERAIQVLCRR----RKNNPLLVGESGVGKTAIAEGLAWRIVQG   66 (268)
T ss_dssp             CSCHHHHHHHHHHHTSS----SSCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             cChHHHHHHHHHHHhcC----ccCCcEEECCCCCcHHHHHHHHHHHHHhC
Confidence            33444666777666532    24579999999999999999999998863

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.64  E-value=0.014  Score=48.26  Aligned_cols=26  Identities=23%  Similarity=0.479  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ++-.|++.|+=|+|||||+|.+++.+
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhc
Confidence            45689999999999999999999876

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.62  E-value=0.0036  Score=50.52  Aligned_cols=22  Identities=36%  Similarity=0.496  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +|+++|..|+|||||.+.|++.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999998764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.0095  Score=49.02  Aligned_cols=21  Identities=19%  Similarity=0.351  Sum_probs=18.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLV   58 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~   58 (376)
                      -+|+++|..|+|||||++.++
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~   24 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFA   24 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            479999999999999987665

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.012  Score=49.24  Aligned_cols=23  Identities=17%  Similarity=0.361  Sum_probs=19.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +.|+|+||.||||+|+++.|+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            45888999999999999877653

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=94.55  E-value=0.0048  Score=50.79  Aligned_cols=23  Identities=26%  Similarity=0.216  Sum_probs=20.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|+++|..|||||||.+.|++
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTTC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            57899999999999999987654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.51  E-value=0.011  Score=48.47  Aligned_cols=22  Identities=14%  Similarity=0.295  Sum_probs=19.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+++|..++|||||.+.+++
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5899999999999999887765

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.49  E-value=0.01  Score=49.23  Aligned_cols=21  Identities=24%  Similarity=0.528  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +|+++|..|+|||||.+.+++
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            789999999999999987765

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.47  E-value=0.01  Score=52.43  Aligned_cols=38  Identities=16%  Similarity=0.311  Sum_probs=26.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      -.+.++||.|||||||.|.|+..+--...++.+=+-|+
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i   62 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI   62 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEEC
Confidence            36778999999999999999886533334455433333

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.011  Score=49.39  Aligned_cols=22  Identities=18%  Similarity=0.206  Sum_probs=19.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+++|..|+|||||.+.+++
T Consensus         4 iKvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999877665

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.37  E-value=0.022  Score=50.77  Aligned_cols=53  Identities=13%  Similarity=0.206  Sum_probs=35.0

Q ss_pred             hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH----cCCcEEEEcC
Q 017141           20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ----RYKKVAYLDT   73 (376)
Q Consensus        20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~----~~~~v~~lDl   73 (376)
                      +=+++++.+... +......|.|+|..|+||||||+.++|..-.    .+..++|+..
T Consensus        28 ~~~~i~~~L~~~-~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~v   84 (277)
T d2a5yb3          28 HVDRVIKKLDEM-CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKD   84 (277)
T ss_dssp             HHHHHHHHHHHH-TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEEC
T ss_pred             HHHHHHHHHHhc-cCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEe
Confidence            445566666432 1223457889999999999999999997421    1234666654

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.34  E-value=0.013  Score=50.37  Aligned_cols=27  Identities=30%  Similarity=0.278  Sum_probs=24.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      .|.-|.|-|.-||||||+++.|.++|-
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            477899999999999999999999873

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.004  Score=53.65  Aligned_cols=25  Identities=28%  Similarity=0.238  Sum_probs=23.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+.|.|-|+-||||||+++.|+.+|
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999986

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.31  E-value=0.006  Score=50.18  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=18.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      -+|+|+|..++|||||.+.|++.
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            37999999999999998877653

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.30  E-value=0.007  Score=49.79  Aligned_cols=22  Identities=18%  Similarity=0.191  Sum_probs=9.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+|+|..+||||||.+.|++
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3799999999999999987765

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.22  E-value=0.008  Score=55.62  Aligned_cols=35  Identities=17%  Similarity=0.256  Sum_probs=29.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      .||.|-|+-|+||||+++.|.+++-..+.++.++.
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~   40 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIG   40 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence            47999999999999999999999876666666643

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.19  E-value=0.012  Score=52.40  Aligned_cols=40  Identities=20%  Similarity=0.363  Sum_probs=30.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV   75 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~   75 (376)
                      +|..+-++|+.|+|||||++.|+..+--...++.|-+-|+
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i   68 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI   68 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEec
Confidence            4779999999999999999999887533334566644444

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=94.12  E-value=0.01  Score=51.93  Aligned_cols=24  Identities=21%  Similarity=0.408  Sum_probs=21.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +|..+.|+|+.|+|||||.+.|+.
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            478999999999999999998876

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=94.09  E-value=0.012  Score=51.75  Aligned_cols=41  Identities=22%  Similarity=0.313  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      +|..+-++||.|+|||||.|.++..+--...++.+-+-|+.
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~   71 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDIT   71 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccc
Confidence            47799999999999999999998865433445665444443

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.06  E-value=0.02  Score=53.44  Aligned_cols=45  Identities=22%  Similarity=0.380  Sum_probs=28.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLS   87 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vS   87 (376)
                      +...+|++||+|+|||-+||.|+..+   +..-.-+|+    ++|+-+|.+.
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~---~~~~ir~D~----s~~~e~gyvg  111 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDA----TSLTEAGYVG  111 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEG----GGCC------
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhc---ccceeehhh----hhcccchhhH
Confidence            45679999999999999999999764   222333443    5555666654

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=94.03  E-value=0.0092  Score=49.33  Aligned_cols=23  Identities=30%  Similarity=0.287  Sum_probs=19.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLV   58 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~   58 (376)
                      ..-+|+++|..|||||||.+.|.
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHh
Confidence            36799999999999999988763

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=94.02  E-value=0.014  Score=51.33  Aligned_cols=41  Identities=22%  Similarity=0.196  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG   76 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G   76 (376)
                      +|..+-++|+.|+|||||.+.|+...--...++.+.+-|+.
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~   67 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVV   67 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecc
Confidence            47789999999999999999998875433445555444443

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.94  E-value=0.017  Score=51.05  Aligned_cols=24  Identities=13%  Similarity=0.300  Sum_probs=20.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ...+|+++|.+|+|||||...|++
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhC
Confidence            467999999999999998877764

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.81  E-value=0.014  Score=56.00  Aligned_cols=25  Identities=28%  Similarity=0.525  Sum_probs=22.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +..||++||+|||||-+||+|+..+
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999999865

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.79  E-value=0.011  Score=48.85  Aligned_cols=20  Identities=20%  Similarity=0.182  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLV   58 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~   58 (376)
                      .|.|+|.+|+|||||.+.|+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~   22 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVS   22 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSE
T ss_pred             eEEEECCCCCCHHHHHHHHh
Confidence            58999999999999887654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.79  E-value=0.022  Score=52.12  Aligned_cols=35  Identities=20%  Similarity=0.354  Sum_probs=29.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      .++++||+|+|||.+|+.|+..+.........+|+
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~   89 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM   89 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred             EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEec
Confidence            78999999999999999999998755555555655

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.019  Score=47.58  Aligned_cols=23  Identities=13%  Similarity=0.216  Sum_probs=19.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      --+|+|+|..++|||||.+.+++
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHh
Confidence            35899999999999999986654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=93.71  E-value=0.018  Score=47.74  Aligned_cols=21  Identities=38%  Similarity=0.314  Sum_probs=18.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLV   58 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~   58 (376)
                      -+|.|+|..|+|||||...|+
T Consensus         6 inIaiiG~~naGKSTL~n~L~   26 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLT   26 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEEEeCCCCcHHHHHHHHH
Confidence            369999999999999987665

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.68  E-value=0.05  Score=46.08  Aligned_cols=105  Identities=18%  Similarity=0.144  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCCC
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDV  115 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~  115 (376)
                      .++.+++.|++|+||+|+|+.|++++.....+              -|-.+.+   .             |.     |. 
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~--------------h~D~~~i---~-------------~~-----~~-   57 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEKFPPK--------------ASDVLEI---D-------------PE-----GE-   57 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCC--------------TTTEEEE---C-------------CS-----SS-
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhccccC--------------CCCEEEE---e-------------CC-----cC-
Confidence            47899999999999999999999987432111              0111111   0             10     11 


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccccccHHHHHHHHHHhCCCEEEEEecCc
Q 017141          116 SSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKINISF  190 (376)
Q Consensus       116 sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~G~~ll~~~i~~~~p~~Vv~l~~~~  190 (376)
                      +..      ++.+..+.+.+..+      +  .....--+|||-.-.+...+..-|..+++.-..+.++.+-.+.
T Consensus        58 ~I~------Id~IR~i~~~~~~~------~--~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~  118 (198)
T d2gnoa2          58 NIG------IDDIRTIKDFLNYS------P--ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRR  118 (198)
T ss_dssp             CBC------HHHHHHHHHHHTSC------C--SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESC
T ss_pred             CCC------HHHHHHHHHHHhhC------c--ccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCC
Confidence            010      23444444433211      0  0112335778777776666777777788877677777777654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.65  E-value=0.0076  Score=49.77  Aligned_cols=20  Identities=20%  Similarity=0.270  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLV   58 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~   58 (376)
                      .|.++|..|+|||||.+.|+
T Consensus         3 ~VaivG~~nvGKSTLin~L~   22 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMT   22 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            38999999999999987775

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=93.64  E-value=0.027  Score=50.11  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=20.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .+.+|+|+|-+|+|||||...|.+
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~  134 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAK  134 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CceEEEEEecCccchhhhhhhhhc
Confidence            467899999999999999877764

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.52  E-value=0.034  Score=46.69  Aligned_cols=34  Identities=15%  Similarity=0.062  Sum_probs=23.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      +..+++++|+|+|||+.+-..+-+.+.++.++.+
T Consensus        40 ~~~~il~apTGsGKT~~a~l~i~~~~~~~~~vl~   73 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLY   73 (202)
T ss_dssp             CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEcCCCCchhHHHHHHHHHHhhccCccee
Confidence            4569999999999998875544444454445544

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.47  E-value=0.016  Score=48.74  Aligned_cols=23  Identities=22%  Similarity=0.328  Sum_probs=20.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +.-||++|++|+||||++..|+.
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            56799999999999999987654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.47  E-value=0.021  Score=47.92  Aligned_cols=23  Identities=26%  Similarity=0.297  Sum_probs=19.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +.-|+++|++|+||||++..|+.
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            56799999999999999976553

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.33  E-value=0.021  Score=47.54  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=20.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +.-||++|++|+||||++-.|+.+
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            567999999999999998766543

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.29  E-value=0.051  Score=49.00  Aligned_cols=43  Identities=12%  Similarity=0.109  Sum_probs=34.2

Q ss_pred             HHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017141           22 SDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKK   67 (376)
Q Consensus        22 ~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~   67 (376)
                      .+++|.+.--   ..|.|++|.|+.|+|||||+..+++.....+..
T Consensus        31 ~r~ID~l~Pi---grGQr~~I~g~~g~GKT~l~~~i~~~~~~~~~~   73 (289)
T d1xpua3          31 ARVLDLASPI---GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPD   73 (289)
T ss_dssp             HHHHHHHSCC---BTTCEEEEEECSSSSHHHHHHHHHHHHHHHCTT
T ss_pred             ceeeeecccc---cCCCeeeEeCCCCCCHHHHHHHHHHHHhhcCCC
Confidence            4677776522   248899999999999999999999988765543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.09  E-value=0.045  Score=49.79  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=22.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ..++++||+|+|||.|++.|+..+
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHHhhc
Confidence            379999999999999999999875

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=93.03  E-value=0.065  Score=46.74  Aligned_cols=36  Identities=25%  Similarity=0.325  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL   71 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l   71 (376)
                      .+...|++|..|||||-.+-..+-..+..|++|+++
T Consensus        75 ~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l  110 (233)
T d2eyqa3          75 LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL  110 (233)
T ss_dssp             SCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEE
T ss_pred             CccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEE
Confidence            356899999999999999999999999999999885

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.93  E-value=0.026  Score=46.69  Aligned_cols=20  Identities=30%  Similarity=0.549  Sum_probs=18.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHL   57 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L   57 (376)
                      -+|+++|..|||||||.+.+
T Consensus         3 iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            47999999999999999988

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=92.89  E-value=0.015  Score=53.12  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      -||++|++|+||||++|.|+.-|
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHS
T ss_pred             eEEEECCCCccHHHHHHHHHHhC
Confidence            59999999999999999999855

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.86  E-value=0.052  Score=48.35  Aligned_cols=41  Identities=12%  Similarity=0.251  Sum_probs=27.6

Q ss_pred             hhHHHHHHHhh----c-c-CCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           19 REWSDAADSIA----Y-D-SNTSPPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        19 ~~W~~~~~~i~----~-~-~~~~~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +.|.++++++.    . . ...-.-|+|+|+|..++|||||...|+.
T Consensus         2 ~~~~~~~~~l~d~l~~lg~~~~~~~P~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1           2 EDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             TTHHHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred             HhHHHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhC
Confidence            34556666552    1 1 1123468999999999999998877653

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.85  E-value=0.039  Score=47.52  Aligned_cols=35  Identities=17%  Similarity=0.144  Sum_probs=28.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL   71 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l   71 (376)
                      +..+++++|+|+|||+.+-..+-+++.++.+++|+
T Consensus        58 g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv   92 (237)
T d1gkub1          58 KESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVI   92 (237)
T ss_dssp             TCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEE
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEE
Confidence            55799999999999998887777777777666553

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.77  E-value=0.022  Score=52.53  Aligned_cols=26  Identities=19%  Similarity=0.211  Sum_probs=23.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      ..||.|-|+-|+||||+++.|.+++-
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHhc
Confidence            35899999999999999999999964

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=92.75  E-value=0.049  Score=41.83  Aligned_cols=37  Identities=14%  Similarity=0.019  Sum_probs=29.0

Q ss_pred             CCCEEEEEcCCCCcHHHHH-HHHHHHHHHcCCcEEEEc
Q 017141           36 PPPIAFICGAKNCGKTTFS-RHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~-r~L~N~ll~~~~~v~~lD   72 (376)
                      ++.+++++++.|+|||..+ ..++.++.+.+.+++++-
T Consensus         6 ~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~   43 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLA   43 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeee
Confidence            4678999999999999655 567788877777777653

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.73  E-value=0.032  Score=48.57  Aligned_cols=22  Identities=18%  Similarity=0.341  Sum_probs=19.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLV   58 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~   58 (376)
                      +.+.+++|+.|+|||||...|.
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHS
T ss_pred             CCeEEEECCCCCCHHHHHHhhc
Confidence            5789999999999999887654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.62  E-value=0.033  Score=45.79  Aligned_cols=23  Identities=22%  Similarity=0.418  Sum_probs=20.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      -+|+++|..|||||||.+.+.+.
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999988554

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.61  E-value=0.034  Score=49.13  Aligned_cols=26  Identities=15%  Similarity=0.258  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQR   64 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~   64 (376)
                      -++|.|+.||||||.+-..+.++++.
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv~~ll~~   41 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKIAHLIRG   41 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHHHHHHHHh
Confidence            37899999999999887777888765

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.52  E-value=0.037  Score=45.31  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=19.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|+++|..|||||||.+.|..
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhh
Confidence            4799999999999999987643

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.49  E-value=0.094  Score=48.57  Aligned_cols=28  Identities=36%  Similarity=0.464  Sum_probs=24.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQR   64 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~   64 (376)
                      .+..+|.|+.|+||||....+++.+.+.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~l~~~  190 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAALIQM  190 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEcCCCCCceehHHHHHHHHHHH
Confidence            4689999999999999999888888754

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.43  E-value=0.086  Score=49.41  Aligned_cols=45  Identities=13%  Similarity=0.135  Sum_probs=33.1

Q ss_pred             cCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141           16 YIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR   64 (376)
Q Consensus        16 ~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~   64 (376)
                      .--++-..+++.+++..    ...++++|++|+|||+++.-|+.+..+.
T Consensus        26 gr~~ei~~~~~~L~r~~----k~n~llvG~~GvGKtaiv~~la~~i~~~   70 (387)
T d1qvra2          26 GRDEEIRRVIQILLRRT----KNNPVLIGEPGVGKTAIVEGLAQRIVKG   70 (387)
T ss_dssp             SCHHHHHHHHHHHHCSS----CCCCEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHhcCC----CCCCeEECCCCCCHHHHHHHHHHHHHhC
Confidence            33446667777666422    2346888999999999999999998763

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=92.17  E-value=0.052  Score=42.37  Aligned_cols=31  Identities=19%  Similarity=0.120  Sum_probs=22.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY   70 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~   70 (376)
                      ..+.+|.+|.|||||+.+-   ..+++.++++++
T Consensus         8 ~~~~ll~apTGsGKT~~~~---~~~~~~~~~vli   38 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVP---AAYAAQGYKVLV   38 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHH---HHHHTTTCCEEE
T ss_pred             CCEEEEEeCCCCCHHHHHH---HHHHHcCCcEEE
Confidence            4688999999999998753   334555555444

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.13  E-value=0.042  Score=47.03  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=19.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLV   58 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~   58 (376)
                      .+|+++|..|||||||.+.|.
T Consensus         7 ~KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            589999999999999988874

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.73  E-value=0.084  Score=46.98  Aligned_cols=27  Identities=22%  Similarity=0.282  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHHcC
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLLQRY   65 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~   65 (376)
                      .++|.|+.||||||.+-.-+.+++..+
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~ll~~~   52 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYLMAEK   52 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred             CEEEEecCCccHHHHHHHHHHHHHHcC
Confidence            388999999999997766666666543

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.53  E-value=0.066  Score=44.86  Aligned_cols=30  Identities=23%  Similarity=0.469  Sum_probs=24.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      |||+|+..||||.+|-.|+    ..+.++.||-.
T Consensus         2 iLVtGGarSGKS~~AE~l~----~~~~~~~YiAT   31 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALI----GDAPQVLYIAT   31 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHH----CSCSSEEEEEC
T ss_pred             EEEECCCCccHHHHHHHHH----hcCCCcEEEEc
Confidence            7999999999999998654    55677888764

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=91.53  E-value=0.052  Score=46.90  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=20.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .-.+|.|+|..|+|||||+..|+-
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~   31 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLH   31 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHH
Confidence            346899999999999999988854

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=91.51  E-value=0.064  Score=45.24  Aligned_cols=23  Identities=22%  Similarity=0.244  Sum_probs=19.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .-.|.|+|..|+|||||+..|+.
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CeEEEEEEccCCcHHHHHHHHHh
Confidence            34799999999999998877753

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=91.36  E-value=0.078  Score=44.78  Aligned_cols=26  Identities=23%  Similarity=0.280  Sum_probs=21.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      -.|.|+|..|+|||||+..|+.-+..
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~~~~   29 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKILAE   29 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHHH
Confidence            46999999999999999988765543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=91.34  E-value=0.052  Score=48.63  Aligned_cols=24  Identities=21%  Similarity=0.477  Sum_probs=20.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .-|+|+|+|..++|||||...|+.
T Consensus        23 ~lP~ivVvG~~ssGKSSliNaLlG   46 (306)
T d1jwyb_          23 DLPQIVVVGSQSSGKSSVLENIVG   46 (306)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHT
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHhC
Confidence            468999999999999998776654

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=91.08  E-value=0.12  Score=44.04  Aligned_cols=26  Identities=23%  Similarity=0.540  Sum_probs=23.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      +...+++.||.++|||+||..|++.+
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHHHh
Confidence            35689999999999999999999886

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=90.70  E-value=0.07  Score=44.48  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=18.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -+|.|+|..|+|||||+..|+.
T Consensus         6 inIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           6 VNIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEEeccCCcHHHHHHHHHh
Confidence            3679999999999999887753

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.59  E-value=0.14  Score=45.29  Aligned_cols=55  Identities=16%  Similarity=0.169  Sum_probs=40.1

Q ss_pred             CChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141           17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL   71 (376)
Q Consensus        17 ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l   71 (376)
                      +-++=.++++.|..+-....+..-|+.|..|||||-.+-..+-..+..|++|+++
T Consensus        84 LT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m  138 (264)
T d1gm5a3          84 LTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFM  138 (264)
T ss_dssp             CCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEE
T ss_pred             CCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhcccceeEE
Confidence            3444445555554332112355679999999999999999999999999999985

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.54  E-value=0.081  Score=44.86  Aligned_cols=24  Identities=29%  Similarity=0.214  Sum_probs=21.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      -.|.|+|..|+|||||+..|+..+
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHh
Confidence            468999999999999999997655

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=90.50  E-value=0.034  Score=48.57  Aligned_cols=23  Identities=13%  Similarity=0.306  Sum_probs=19.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLV   58 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~   58 (376)
                      .+.+.+++|+.|+|||||...|+
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~  118 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAIS  118 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHC
T ss_pred             ccceEEEECCCCccHHHHHHhhc
Confidence            36788999999999999887665

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=90.33  E-value=0.1  Score=45.87  Aligned_cols=36  Identities=17%  Similarity=0.201  Sum_probs=28.2

Q ss_pred             CCCEEEEEcCCCCcHHH-HHHHHHHHHHHcCCcEEEE
Q 017141           36 PPPIAFICGAKNCGKTT-FSRHLVNVLLQRYKKVAYL   71 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKST-l~r~L~N~ll~~~~~v~~l   71 (376)
                      ++..++|.+++|||||+ +.-.++..++.++.+++++
T Consensus         8 ~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi   44 (305)
T d2bmfa2           8 KKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLIL   44 (305)
T ss_dssp             TTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEE
T ss_pred             cCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence            46789999999999996 5556667777777777775

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=90.08  E-value=0.046  Score=50.23  Aligned_cols=24  Identities=33%  Similarity=0.369  Sum_probs=20.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      .+|.|-|+-|+||||+++.|.+++
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC--
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHh
Confidence            478999999999999999999876

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.94  E-value=0.073  Score=50.03  Aligned_cols=23  Identities=22%  Similarity=0.307  Sum_probs=20.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      +.+|.|+|.+|+|||||...|.+
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            57899999999999999887764

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.83  E-value=0.17  Score=45.02  Aligned_cols=38  Identities=21%  Similarity=0.203  Sum_probs=28.9

Q ss_pred             HHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           23 DAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        23 ~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      +++|.+.--   ..|.|++|.|+.++|||||+..+++...+
T Consensus        57 raID~l~pi---gkGQr~~If~~~g~GKt~l~~~i~~~~~~   94 (276)
T d2jdid3          57 KVVDLLAPY---AKGGKIGLFGGAGVGKTVLIMELINNVAK   94 (276)
T ss_dssp             HHHHHHSCE---ETTCEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred             eeeeeeccc---cCCCEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            455555321   24889999999999999999999887543

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.79  E-value=1.6  Score=36.99  Aligned_cols=107  Identities=14%  Similarity=0.158  Sum_probs=56.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceE-EEEecccCCCCCCCCCCCCCceeEEcCCC-
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFL-SLTVVDTLTPDLTIPCLKTPKRCYFFGDV-  115 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~v-Sl~~i~~~~~~~~~~~~~~p~~~~f~G~~-  115 (376)
                      ..++|.||..+||||+.|.++--.+-            .|..+..|+-- ++..++.              ....+|.. 
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~~il------------Aq~G~~vpA~~~~i~~~d~--------------I~~~~~~~d   89 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALIALL------------AQVGSFVPAEEAHLPLFDG--------------IYTRIGASD   89 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHHHH------------HTTTCCBSSSEEEECCCSE--------------EEEECCC--
T ss_pred             cEEEEECCCccccchhhhhhHHHHHH------------HhccceeecCceEEeecce--------------EEEEECCCc
Confidence            46899999999999999976544331            13333333311 1111111              11234433 


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCcccc--cc----HHHHHHHHHHhCCCE
Q 017141          116 SSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKG--IG----YDILVDMLKYITPTH  182 (376)
Q Consensus       116 sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g--~G----~~ll~~~i~~~~p~~  182 (376)
                      +...+...|..-+.++.+..++-           ..++-++||=.|==..  .|    ..++..+.+. ++..
T Consensus        90 ~~~~~~StF~~el~~~~~il~~~-----------~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~-~~~~  150 (224)
T d1ewqa2          90 DLAGGKSTFMVEMEEVALILKEA-----------TENSLVLLDEVGRGTSSLDGVAIATAVAEALHER-RAYT  150 (224)
T ss_dssp             ----CCSHHHHHHHHHHHHHHHC-----------CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-TCEE
T ss_pred             cccCCccHHHHhHHHHHHHhccC-----------CCCcEEeecccccCcchhhhcchHHHHHHHHhhc-Ccce
Confidence            34556677888888877665431           1345688898874222  13    3455555553 4443

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.41  E-value=0.24  Score=39.05  Aligned_cols=36  Identities=22%  Similarity=0.110  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      |..-+|+||-.|||||-.-..+++....|.+|.++.
T Consensus         2 G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ik   37 (133)
T d1xbta1           2 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK   37 (133)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             cEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEe
Confidence            456789999999999988888888888888888875

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=88.61  E-value=0.25  Score=44.90  Aligned_cols=24  Identities=29%  Similarity=0.414  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNVLL   62 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~ll   62 (376)
                      .+|+.||+|+|||.+++.|++.+-
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHHhc
Confidence            466689999999999999999874

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=87.88  E-value=0.41  Score=38.04  Aligned_cols=36  Identities=14%  Similarity=0.081  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD   72 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD   72 (376)
                      |..-+|+||-.|||||-.-..+++....+.+|.++.
T Consensus         7 G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~   42 (141)
T d1xx6a1           7 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK   42 (141)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEE
Confidence            667899999999999988888877777888888875

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.88  E-value=0.22  Score=43.07  Aligned_cols=127  Identities=13%  Similarity=0.149  Sum_probs=63.2

Q ss_pred             CCccCChhHHHHHHHhhccCC-------CCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCce
Q 017141           13 PAIYIPREWSDAADSIAYDSN-------TSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGF   85 (376)
Q Consensus        13 ~~~~ip~~W~~~~~~i~~~~~-------~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~   85 (376)
                      +.+.+-+.|+.+++.+..+..       ......++|.||..+||||+.|.++--.+-            .|..+..|+-
T Consensus        10 ~~l~i~~~rHPlle~~~~~~~VpNdi~l~~~~~~~iiTGpN~~GKSt~lk~i~l~~~l------------aq~G~~VpA~   77 (234)
T d1wb9a2          10 PGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALM------------AYIGSYVPAQ   77 (234)
T ss_dssp             SCEEEEEECCTTHHHHCSSCCCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHHHH------------HTTTCCBSSS
T ss_pred             CcEEEEEeECCEEEcccCCCccceeEEECCCceEEEEeccCchhhHHHHHHHHHHHHH------------HHcCCeEecC
Confidence            356666677777765421110       112457899999999999999998655432            2333334432


Q ss_pred             EE-EEecccCCCCCCCCCCCCCceeEEcCCCC-CCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCcc
Q 017141           86 LS-LTVVDTLTPDLTIPCLKTPKRCYFFGDVS-SKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWV  163 (376)
Q Consensus        86 vS-l~~i~~~~~~~~~~~~~~p~~~~f~G~~s-p~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv  163 (376)
                      =. +..++.              ....+|... ...+...|..-+.++.+..+.-           ..++=++||=.|=-
T Consensus        78 ~a~~~~~d~--------------I~~~~~~~d~~~~~~S~F~~E~~~~~~il~~~-----------~~~sLvliDE~~~g  132 (234)
T d1wb9a2          78 KVEIGPIDR--------------IFTRVGAADDLASGRSTFMVEMTETANILHNA-----------TEYSLVLMDEIGRG  132 (234)
T ss_dssp             EEEECCCCE--------------EEEEEC-----------CHHHHHHHHHHHHHC-----------CTTEEEEEESCCCC
T ss_pred             ceecccchh--------------heeEEccCcccccchhHHHHHHHHHHHHHHhc-----------ccccEEeecccccC
Confidence            11 111111              112234332 3445567777787777655431           13456788887742


Q ss_pred             cc--ccHHHHHHHHH
Q 017141          164 KG--IGYDILVDMLK  176 (376)
Q Consensus       164 ~g--~G~~ll~~~i~  176 (376)
                      ..  .|..+...+++
T Consensus       133 T~~~eg~~l~~a~l~  147 (234)
T d1wb9a2         133 TSTYDGLSLAWACAE  147 (234)
T ss_dssp             SSSSHHHHHHHHHHH
T ss_pred             CChhhhhHHHHHhhh
Confidence            22  25555444443

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.38  E-value=0.21  Score=43.36  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=20.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      -.|.|+|..|+|||||+-.|+-+.
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~   30 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKC   30 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHc
Confidence            479999999999999999887543

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=85.96  E-value=0.53  Score=37.23  Aligned_cols=36  Identities=25%  Similarity=0.123  Sum_probs=26.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141           38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT   73 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl   73 (376)
                      ..-+|+||-.|||||-.-..+++....+.+|.++.-
T Consensus         3 ~L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp   38 (139)
T d2b8ta1           3 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKP   38 (139)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             EEEEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEE
Confidence            345899999999999555555666677888888653

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=85.19  E-value=0.058  Score=43.67  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      ..+|+|+.||||||+...|.=-
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~   47 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTA   47 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999988743

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=85.03  E-value=0.43  Score=42.03  Aligned_cols=26  Identities=15%  Similarity=0.369  Sum_probs=22.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141           36 PPPIAFICGAKNCGKTTFSRHLVNVL   61 (376)
Q Consensus        36 ~~~~vlV~G~~~sGKSTl~r~L~N~l   61 (376)
                      ....+++.|+.++|||||+..|++.+
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45688999999999999999988865

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.70  E-value=0.28  Score=41.71  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=19.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      -.|.|+|..|+|||||+-.|+.
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHH
Confidence            4699999999999999988864

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.93  E-value=0.31  Score=43.23  Aligned_cols=39  Identities=21%  Similarity=0.251  Sum_probs=24.9

Q ss_pred             ccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 017141           15 IYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLV   58 (376)
Q Consensus        15 ~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~   58 (376)
                      +.+.++=.+.++.+.     .+-.+|-|+|+..+|||||+..|+
T Consensus        15 l~~~~e~l~~l~~~~-----~~v~vvsi~G~~~sGKS~llN~l~   53 (277)
T d1f5na2          15 LMANPEALKILSAIT-----QPMVVVAIVGLYRTGKSYLMNKLA   53 (277)
T ss_dssp             EEECHHHHHHHHTCC-----SBEEEEEEEEBTTSSHHHHHHHHT
T ss_pred             EEECHHHHHHHHcCC-----CCEEEEEEECCCCCCHHHHHHHHc
Confidence            455554444444432     123478999999999999766554

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=83.87  E-value=0.35  Score=42.97  Aligned_cols=23  Identities=35%  Similarity=0.417  Sum_probs=21.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      ..+|=|+|-+|||||||-..|++
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHC
Confidence            56899999999999999998886

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.60  E-value=0.25  Score=44.14  Aligned_cols=22  Identities=32%  Similarity=0.304  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      +|-++|-+|+|||||-..|.+.
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             cEeEECCCCCCHHHHHHHHHCC
Confidence            5889999999999999988764

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=83.14  E-value=0.52  Score=47.12  Aligned_cols=27  Identities=26%  Similarity=0.388  Sum_probs=24.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141           37 PPIAFICGAKNCGKTTFSRHLVNVLLQ   63 (376)
Q Consensus        37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~   63 (376)
                      ...|+|.|..|||||+-++.+++||..
T Consensus        86 ~QsIiisGeSGsGKTe~~k~il~yL~~  112 (684)
T d1lkxa_          86 NQCVIISGESGAGKTEASKKIMQFLTF  112 (684)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            568999999999999999999999863

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=82.11  E-value=0.29  Score=42.52  Aligned_cols=21  Identities=19%  Similarity=0.336  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVN   59 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N   59 (376)
                      .|.|+|..|+|||||+..|+-
T Consensus        26 Ni~iiGHVD~GKSTL~~~Ll~   46 (245)
T d1r5ba3          26 NIVFIGHVDAGKSTLGGNILF   46 (245)
T ss_dssp             EEEEEECGGGTHHHHHHHHHH
T ss_pred             EEEEEeeCCCCHHHHHHHHHH
Confidence            599999999999999998853

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.59  E-value=0.38  Score=42.14  Aligned_cols=20  Identities=20%  Similarity=0.424  Sum_probs=17.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHH
Q 017141           38 PIAFICGAKNCGKTTFSRHL   57 (376)
Q Consensus        38 ~~vlV~G~~~sGKSTl~r~L   57 (376)
                      ..-+++|+.||||||+...|
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHH
Confidence            36789999999999998766

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=81.45  E-value=0.43  Score=42.07  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 017141           39 IAFICGAKNCGKTTFSRHLVNV   60 (376)
Q Consensus        39 ~vlV~G~~~sGKSTl~r~L~N~   60 (376)
                      .|.|+|..|+|||||+-.|+-+
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~   25 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYK   25 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            5899999999999999988644