Citrus Sinensis ID: 017142

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
Protein Sequence
MDSLVGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVENSPDFEKDFVVCRLERKREKKTLGVVSTKRKREKKTLGVVSTKRKREKKLGVSTSDGDQSCQNLTFKKSHVAEDTNRNHVAEKVDLVSIAGNIVLVPELQVGDHSISYYRNHVAEKIVEDSVQAETRRLAELNRRGDGYDARNDASVWALQSSDYPEQESSDYNGSSCGSGLLNSQLDGEQVVGQFNSRRDFQTEYSPEETGETTPGFFTSKSDEGVYMEGCSDANTGTESFIEWIDVLFDY
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHccccccccccEEEEEcccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccccccccEEEEEcccccccccccEEEEEEEEccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccHHHEEHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccHccccccccEEEEEccccccccccccccHHcccccEEcccccccEEccccccEEEEEEEEEEEEcccccccccccEEEEEEEccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccEcccccccccccccEEEEcccccccccHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mdslvgfrfyptDEQIILLLTMkrrdpagfsvrtikeidlysfepwelpchseiqseEEVWYFfcepcyknaeskrvrrrtkegywkktgrgsnikrkyktevIGTKKilsfsrddaaaekdktEWVIHEIAvenspdfeKDFVVCRLERkrekktlgvvstkrkrekktlgvvstkrkrekklgvstsdgdqscqnltfkkshvaedtnrnhvaekVDLVSIAGnivlvpelqvgdhsiSYYRNHVAEKIVEDSVQAETRRLAELNrrgdgydarndASVWAlqssdypeqessdyngsscgsgllnsqldgeqvvgqfnsrrdfqteyspeetgettpgfftsksdegvymegcsdantgteSFIEWIDVLFDY
Flexible Loop (DISEMBL)
mdslvgfrfypTDEQIILLLtmkrrdpagfSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFCEPcyknaeskrvrrrtkegywkktgrgsnikrkyktevigtkkilsfsrddaaaekdKTEWVIHeiavenspdfekDFVVCRlerkrekktlgvvstkrkrekktlgvvstkrkrekklgvstsdgdqscqnLTFKkshvaedtnrNHVAEKVDLVSIAGNIVLVPELQVGDHSISYYRNHVAEKIVEDSVQAETRRLAelnrrgdgydarnDASVWALQSSDYPEQESSDYNGSSCGSGLLNSQLDGEQVVGQFNSRRDFQteyspeetgettpgfftsksdEGVYMEGCSdantgtesfIEWIDVLFDY
Low Complexity Region (SEG)
MDSLVGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVENSPDFEKDFVVCRLERKREKKTLGVVSTKRKREKKTLGVVSTKRKREKKLGVSTSDGDQSCQNLTFKKSHVAEDTNRNHVAEKVDLVSIAGNIVLVPELQVGDHSISYYRNHVAEKIVEDSVQAETRRLAELNRRGDGYDARNDASVWALQSSDYPEQESSDYngsscgsgllnsQLDGEQVVGQFNSRRDFQteyspeetgettpgfftsKSDEGVYMEGCSDANTGTESFIEWIDVLFDY
Disordered region (IsUnstruct)
***LVGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFCEPCYKNAES**V****KEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVENSPDFEKDFVVCRLE**************************************************************NHVAEKVDLVSIAGNIVLVPELQVGDHSISYYRNHVAEKIVEDS***********************************************************************************************VYMEGCSDANTGTESFIEWIDVLF**
Disordered Region (DISOPRED)
MDSLVGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVENSPDFEKDFVVCRLER******************************************************************************************************************************************************************GEQVVGQFNSRRDF*TEY***********F*TSKSDEGVYMEGCSDANTGTESFIEWIDVLFDY
Disordered Region (DISEMBL)
MDSLVGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFCEPCYKNAE*********EGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVENSPDFEKDFVVCRLERKREKKTLG**********************************QSCQNLTFKKSHVAEDTNRNHVAEKVDLVSIAGNIVLVPELQVGDHSISYYRNHVAEKIVEDSVQAETRRLAELNRRGDGYDARNDASVWALQS***************CGSGLLNSQLDGEQVVGQFNSRRDFQ************PGFFTSKSDEGVYMEGCSDANTGTESFIEWIDVLFDY
Disordered Region (DISPRO)
*DSLVGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVENSPDFEKDFVVCRLERKRE*****************************************CQNLTFKKSHVAEDTNRNHVAEKVDLVSIAGNIVLVPELQVGDHSISYYRNHVAEKI*EDS*******************************S*YPEQESSDYNGSSCGSGLLNSQLDGEQVVGQFNSRRDFQTEYSPEETGETTPGFFTSKSDEGVYMEGCSDANTGTESFIEWIDVLFDY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSLVGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVENSPDFEKDFVVCRLERKREKKTLGVVSTKRKREKKTLGVVSTKRKREKKLGVSTSDGDQSCQNLTFKKSHVAEDTNRNHVAEKVDLVSIAGNIVLVPELQVGDHSISYYRNHVAEKIVEDSVQAETRRLAELNRRGDGYDARNDASVWALQSSDYPEQESSDYNGSSCGSGLLNSQLDGEQVVGQFNSRRDFQTEYSPEETGETTPGFFTSKSDEGVYMEGCSDANTGTESFIEWIDVLFDY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	376	2.2.26 [Sep-21-2011]
Q94F58	340	NAC domain-containing pro	yes	no	0.380	0.420	0.385	2e-22
O81913	359	NAC domain-containing pro	no	no	0.420	0.440	0.397	2e-21
Q9FLJ2	336	NAC domain-containing pro	no	no	0.388	0.434	0.398	4e-21
O81914	362	NAC domain-containing pro	no	no	0.417	0.433	0.357	1e-20
Q9C878	305	Protein BEARSKIN1 OS=Arab	no	no	0.398	0.491	0.371	1e-19
Q9FWX2	395	NAC domain-containing pro	no	no	0.382	0.364	0.377	2e-19
Q9M126	457	NAC domain-containing pro	no	no	0.396	0.326	0.375	4e-19
Q9SV87	341	Protein BEARSKIN1 OS=Arab	no	no	0.382	0.422	0.366	6e-19
O04017	375	Protein CUP-SHAPED COTYLE	no	no	0.444	0.445	0.327	1e-18
A0SPJ4	405	NAC transcription factor	N/A	no	0.398	0.370	0.335	1e-18

>sp|Q94F58|NAC89_ARATH NAC domain-containing protein 89 OS=Arabidopsis thaliana GN=NAC089 PE=1 SV=1

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 88/148 (59%), Gaps = 5/148 (3%)

Query: 6   GFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFC 65
           GF+F PTD ++I     ++ D    SV  I ++++Y+FEPW+LP  S ++S+ E W+FFC
Sbjct: 24  GFKFSPTDVELISYYLKRKMDGLERSVEVIPDLEIYNFEPWDLPDKSIVKSDSE-WFFFC 82

Query: 66  EPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTE 125
               K     + RR TK GYWK TG+  ++K    +EVIGTK+ L F     A + ++T+
Sbjct: 83  ARGKKYPHGSQNRRATKMGYWKATGKERDVKS--GSEVIGTKRTLVF-HIGRAPKGERTD 139

Query: 126 WVIHEIAVENSPDFEKDFVVCRLERKRE 153
           W++HE  V+     +   VVCR+ R +E
Sbjct: 140 WIMHEYCVKGV-SLDDAMVVCRVRRNKE 166

Transcription factor involved in plant cell division.
Arabidopsis thaliana (taxid: 3702)

>sp|O81913|NAC4_ARATH NAC domain-containing protein 4 OS=Arabidopsis thaliana GN=NAC004 PE=2 SV=2

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 89/166 (53%), Gaps = 8/166 (4%)

Query: 1   MDSLVGFRFYPTDEQII-LLLTMKRRDPAGFSV-RTIKEIDLYSFEPWELPCHSEIQSEE 58
           M + VGFRF P DE+I+   L  K  D     V   I  +D+ SFEPW+LP  S I+S +
Sbjct: 1   MMNPVGFRFRPNDEEIVDHYLRPKNLDSDTSHVDEVISTVDICSFEPWDLPSKSMIKSRD 60

Query: 59  EVWYFFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKT-EVIGTKKILSFSRDDA 117
            VWYFF     K     + RRRT  G+WKKTG+   + RK    E IG K++L F   D 
Sbjct: 61  GVWYFFSVKEMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKRGNREKIGEKRVLVFKNRDG 120

Query: 118 AAEKDKTEWVIHEI-AVENSPDFEKDFVVCRLERKREKKTLGVVST 162
           +    KT+WV+HE  A    P+    + VC++E K E+  +   ST
Sbjct: 121 S----KTDWVMHEYHATSLFPNQMMTYTVCKVEFKGEETEISSSST 162

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score =  102 bits (255), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 85/158 (53%), Gaps = 12/158 (7%)

Query: 1   MDSLVGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEV 60
           MD   GFRF+PTDE++I     K+     FS + I E+DL   EPWELP  +++  +E  
Sbjct: 14  MDLPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMAKMGEKE-- 71

Query: 61  WYFFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAE 120
           WYFFC    K     R  R T+ GYWK TG+   I R     ++G KK L F R   A +
Sbjct: 72  WYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR--GKSLVGMKKTLVFYR-GRAPK 128

Query: 121 KDKTEWVIHEIAVE------NSPDFEKD-FVVCRLERK 151
             KT WV+HE  +E      N P   K+ +V+CR+ +K
Sbjct: 129 GQKTNWVMHEYRLEGKFSAHNLPKTAKNEWVICRVFQK 166

Arabidopsis thaliana (taxid: 3702)

>sp|O81914|NAC5_ARATH NAC domain-containing protein 5 OS=Arabidopsis thaliana GN=NAC005 PE=2 SV=2

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 8/165 (4%)

Query: 1   MDSLVGFRFYPTDEQII-LLLTMKRRDPAGFSV-RTIKEIDLYSFEPWELPCHSEIQSEE 58
           M + VGFRF PTD +I+ + L  K  +     V   I  +D+ SF+PW+LP HS +++ +
Sbjct: 1   MANPVGFRFRPTDGEIVDIYLRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRMKTRD 60

Query: 59  EVWYFFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKY-KTEVIGTKKILSFSRDDA 117
           +VWYFF     K  +  R  R+TK G+WKKTG   +I RK    E IG K++L F     
Sbjct: 61  QVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVFKNHGG 120

Query: 118 AAEKDKTEWVIHEI-AVENSPDFEKDFVVCRLERKREKKTLGVVS 161
           +    K++W +HE  A  +SP+    + +C+++ K E++   V +
Sbjct: 121 S----KSDWAMHEYHATFSSPNQIMTYTLCKVKFKGERREFSVAT 161

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C878|BRN1_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN1 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 83/156 (53%), Gaps = 6/156 (3%)

Query: 6   GFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQS-EEEVWYFF 64
           GFRF+PTDE+++     K+     F +  IKE+DL   EPW+L    +I S  +  WYFF
Sbjct: 11  GFRFHPTDEELLHYYLKKKISYEKFEMEVIKEVDLNKIEPWDLQDRCKIGSTPQNEWYFF 70

Query: 65  CEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKT 124
                K     R  R T  G+WK TGR   I+  YK   IG +K L F +   A    KT
Sbjct: 71  SHKDRKYPTGSRTNRATHSGFWKATGRDKCIRNSYKK--IGMRKTLVFYK-GRAPHGQKT 127

Query: 125 EWVIHEIAVENSPD--FEKDFVVCRLERKREKKTLG 158
           +W++HE  +E++ D   E  +VVCR+ +K+    +G
Sbjct: 128 DWIMHEYRIEDTEDDPCEDGWVVCRVFKKKNLFKVG 163

Transcription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score = 97.4 bits (241), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 82/151 (54%), Gaps = 7/151 (4%)

Query: 6   GFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEV-WYFF 64
           GFRF+PTDE+++     K+       +  IK+IDLY  EPW+L    +I  EE+  WYFF
Sbjct: 10  GFRFHPTDEELVDYYLRKKVASKRIEIDFIKDIDLYKIEPWDLQELCKIGHEEQSDWYFF 69

Query: 65  CEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKT 124
                K     R  R TK G+WK TGR   I  ++   +IG +K L F +   A    K+
Sbjct: 70  SHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHS--LIGMRKTLVFYK-GRAPNGQKS 126

Query: 125 EWVIHEIAV---ENSPDFEKDFVVCRLERKR 152
           +W++HE  +   EN    E+ +VVCR+ +KR
Sbjct: 127 DWIMHEYRLETDENGTPQEEGWVVCRVFKKR 157

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M126|NAC69_ARATH NAC domain-containing protein 69 OS=Arabidopsis thaliana GN=NAC69 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 3/152 (1%)

Query: 4   LVGFRFYPTDEQII-LLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWY 62
           LVG+RFYPT E++I   L  K           I EI++ S++P  LP  S+I+S++ VWY
Sbjct: 5   LVGYRFYPTGEELINHYLKNKILGKTWLVDEAISEINICSYDPIYLPSLSKIKSDDPVWY 64

Query: 63  FFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEV-IGTKKILSFSRDDAAAEK 121
           FFC   Y +A+ K  +R T  GYWK TG    IK K      IG KK L +  +    + 
Sbjct: 65  FFCPKEYTSAKKKVTKRTTSSGYWKATGVDRKIKDKRGNRGEIGIKKTLVY-YEGRVPKG 123

Query: 122 DKTEWVIHEIAVENSPDFEKDFVVCRLERKRE 153
             T WV+HE  +   P  ++++V+C++  K E
Sbjct: 124 VWTPWVMHEYHITCLPQDQRNYVICQVMYKGE 155

Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis mediated by calpain or its functional homolog. Regulates cytokinin signaling during cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV87|BRN2_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 80/153 (52%), Gaps = 9/153 (5%)

Query: 6   GFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQS-EEEVWYFF 64
           GFRF+PTDE+++     K+     F +  I+E+DL   EPW+L    +I S  +  WYFF
Sbjct: 12  GFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKIGSTPQNEWYFF 71

Query: 65  CEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKT 124
                K     R  R T  G+WK TGR   I+  YK   IG +K L F +   A    KT
Sbjct: 72  SHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKK--IGMRKTLVFYK-GRAPHGQKT 128

Query: 125 EWVIHEIAVENSPD-----FEKDFVVCRLERKR 152
           +W++HE  +E++ D      E  +VVCR+  K+
Sbjct: 129 DWIMHEYRLEDADDPQANPSEDGWVVCRVFMKK 161

Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|O04017|NAC98_ARATH Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 10/177 (5%)

Query: 6   GFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFC 65
           GFRF+PTDE++I    +++     FS R I E+DL   EPW+LP  +++  +E  WYFF 
Sbjct: 20  GFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGRAKMGEKE--WYFFS 77

Query: 66  EPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTE 125
               K     R  R T+ GYWK TG+   I       ++G KK L F +   A + +K+ 
Sbjct: 78  LRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFYKGR-APKGEKSN 136

Query: 126 WVIHEIAVENSPDF-------EKDFVVCRLERKREKKTLGVVSTKRKREKKTLGVVS 175
           WV+HE  +E    +       + ++V+ R+ +K    + G VS        T+ V S
Sbjct: 137 WVMHEYRLEGKFSYHFISRSSKDEWVISRVFQKTTLASTGAVSEGGGGGGATVSVSS 193

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|A0SPJ4|NAMB1_TRIDC NAC transcription factor NAM-B1 OS=Triticum dicoccoides GN=NAM-B1 PE=4 SV=1

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 78/179 (43%), Gaps = 29/179 (16%)

Query: 6   GFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFC 65
           GFRF+PTDE++++    K+ D A   V  I E+DLY F+PWELP  + I  +E  WYFF 
Sbjct: 37  GFRFHPTDEELVVHYLKKKADKAPLPVNIIAEVDLYKFDPWELPEKATIGEQE--WYFFS 94

Query: 66  EPCYKNAESKRVRRRTKEGYWKKTGR-----GSNIKRKYKTEVIGTKKILSFSRDDAAAE 120
               K     R  R    GYWK TG       S        E +G KK L F R     +
Sbjct: 95  PRDRKYPNGARPNRAATSGYWKATGTDKPILASGTGCGLVREKLGVKKALVFYRGK-PPK 153

Query: 121 KDKTEWVIHE----------IAVENSPDFEK-----------DFVVCRLERKREKKTLG 158
             KT W++HE           A    P               D+V+CR+ +K  K   G
Sbjct: 154 GLKTNWIMHEYRLTDASGSTTATNRPPPVTGGSRAAASLRLDDWVLCRIYKKINKAAAG 212

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) and the hexaploid wheat (T.aestivum) carry a one bp insertion generating a non-functional allele of this gene. They have a delayed senescence and a lower grain protein, zinc and iron content (PubMed:17124321).

Triticum dicoccoides (taxid: 85692)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
225453680	560	PREDICTED: uncharacterized protein LOC10	0.398	0.267	0.415	7e-26
296089037	335	unnamed protein product [Vitis vinifera]	0.398	0.447	0.415	7e-26
356522462	497	PREDICTED: NAC domain-containing protein	0.406	0.307	0.441	7e-26
224130704	464	NAC domain protein, IPR003441 [Populus t	0.377	0.306	0.463	6e-25
356560207	1061	PREDICTED: uncharacterized protein LOC10	0.412	0.146	0.423	8e-25
358346553	470	NAC domain protein [Medicago truncatula]	0.398	0.319	0.418	8e-24
242079245	364	hypothetical protein SORBIDRAFT_07g02120	0.486	0.502	0.323	1e-22
255548101	302	hypothetical protein RCOM_1340990 [Ricin	0.377	0.470	0.410	1e-22
358346559	400	NAC domain protein [Medicago truncatula]	0.385	0.362	0.432	2e-22
255548099	213	hypothetical protein RCOM_1340980 [Ricin	0.377	0.666	0.401	1e-21

>gi|225453680|ref|XP_002268892.1| PREDICTED: uncharacterized protein LOC100252386 [Vitis vinifera]

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 92/154 (59%), Gaps = 4/154 (2%)

Query: 5   VGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFF 64
           VGFRF+PTDE+++      +       V  I E+D+  +EPW+LP  S IQ+ +  W+FF
Sbjct: 16  VGFRFHPTDEELVDHYLKLKILGMNSHVDIIPEVDVCKWEPWDLPVLSVIQTNDPEWFFF 75

Query: 65  CEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKT 124
           C P YK    +R  R T+ GYWK TG+  NIK +   E++GTKK L F R   A +  +T
Sbjct: 76  CPPDYKYPTGRRSNRATEAGYWKPTGKDRNIKSRATKELLGTKKTLVFYR-GRAPQSVRT 134

Query: 125 EWVIHE--IAVENSPDFEKDFVVCRLERKREKKT 156
            WV+HE   A+ + P   K +V+CRL+RK ++ T
Sbjct: 135 NWVMHEYRAAIASLP-ANKAYVLCRLKRKTDENT 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089037|emb|CBI38740.3| unnamed protein product [Vitis vinifera]

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 92/154 (59%), Gaps = 4/154 (2%)

Query: 5   VGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFF 64
           VGFRF+PTDE+++      +       V  I E+D+  +EPW+LP  S IQ+ +  W+FF
Sbjct: 8   VGFRFHPTDEELVDHYLKLKILGMNSHVDIIPEVDVCKWEPWDLPVLSVIQTNDPEWFFF 67

Query: 65  CEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKT 124
           C P YK    +R  R T+ GYWK TG+  NIK +   E++GTKK L F R   A +  +T
Sbjct: 68  CPPDYKYPTGRRSNRATEAGYWKPTGKDRNIKSRATKELLGTKKTLVFYR-GRAPQSVRT 126

Query: 125 EWVIHE--IAVENSPDFEKDFVVCRLERKREKKT 156
            WV+HE   A+ + P   K +V+CRL+RK ++ T
Sbjct: 127 NWVMHEYRAAIASLPA-NKAYVLCRLKRKTDENT 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522462|ref|XP_003529865.1| PREDICTED: NAC domain-containing protein 69-like [Glycine max]

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 5   VGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFF 64
           VGFRF PTDE+++      +     F V  I EIDL   EPW++P  S I+S++  W+FF
Sbjct: 14  VGFRFRPTDEELVNYYLKHKLLADDFPVHIIPEIDLCKVEPWDVPERSVIKSDDPEWFFF 73

Query: 65  CEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKT 124
               YK  +SKR  R TK GYWK TG   N+K    + VIGTKK L F  +       KT
Sbjct: 74  SPVDYKYLKSKRFNRTTKRGYWKTTGNDRNVKIPGTSNVIGTKKTLVF-HEGRGPRGVKT 132

Query: 125 EWVIHEIAVENSPDFEKDFVVCRLERKREKKTLG 158
            WVIHE     S + ++ FV+CRL +K EKK  G
Sbjct: 133 NWVIHEYHAVTSHESQRAFVLCRLMKKAEKKNEG 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130704|ref|XP_002320907.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222861680|gb|EEE99222.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 86/149 (57%), Gaps = 7/149 (4%)

Query: 5   VGFRFYPTDEQII-LLLTMKRRDPAGFSVRTIKEID-LYSFEPWELPCHSEIQSEEEVWY 62
           VG+RF+PT+E+II   L+ K           I EID LY ++PW+LP    IQS + VWY
Sbjct: 4   VGYRFHPTEEEIIDHYLSCKLNGLDSLVDAYIGEIDHLYQWDPWDLPV---IQSNDRVWY 60

Query: 63  FFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKD 122
           FFC   YK   SKRV R TK G WK TG+  NI R+   EVIGTKK L F       +  
Sbjct: 61  FFCRHDYKFPNSKRVNRTTKNGNWKLTGKVRNITRRGTNEVIGTKKNLVFLH--KCPDSK 118

Query: 123 KTEWVIHEIAVENSPDFEKDFVVCRLERK 151
           KT WVIHE   +  P  E+  V+C+L+ K
Sbjct: 119 KTRWVIHEFQAKTPPPDERAIVLCKLKNK 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560207|ref|XP_003548385.1| PREDICTED: uncharacterized protein LOC100778755 [Glycine max]

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 87/156 (55%), Gaps = 1/156 (0%)

Query: 5   VGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFF 64
           VGFRF PTDE+++      +     F V  I EIDL   EPW++P  S I+S++  W+FF
Sbjct: 13  VGFRFRPTDEELVDYYLKHKLLADDFPVHIIPEIDLCKVEPWDVPGRSVIKSDDPEWFFF 72

Query: 65  CEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKT 124
               YK  +SKR  R TK G+WK TG    I+    + VIGTKK L F +        KT
Sbjct: 73  SPVDYKYLKSKRFNRTTKRGFWKATGNDRKIRIPGTSNVIGTKKTLVFHQ-GRVPRGAKT 131

Query: 125 EWVIHEIAVENSPDFEKDFVVCRLERKREKKTLGVV 160
            WVIHE     S + ++ FV+CRL +K EKK  G +
Sbjct: 132 NWVIHEYHAVTSHESQRAFVLCRLMKKAEKKNEGGI 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346553|ref|XP_003637331.1| NAC domain protein [Medicago truncatula] gi|358346878|ref|XP_003637491.1| NAC domain protein [Medicago truncatula] gi|355503266|gb|AES84469.1| NAC domain protein [Medicago truncatula] gi|355503426|gb|AES84629.1| NAC domain protein [Medicago truncatula]

 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 86/153 (56%), Gaps = 3/153 (1%)

Query: 5   VGFRFYPTDEQII-LLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYF 63
           VGFRF PT E+++   L  K           I E+D+  FEPWELP  S I+S+++ W+F
Sbjct: 195 VGFRFCPTGEELVNHYLRNKLLGNDAIVNNVIAEVDIRKFEPWELPARSVIKSDDQEWFF 254

Query: 64  FCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDK 123
            C   YK A+SKR +R T  G+WK TG   NI+ +   EVIG KK L +  +       K
Sbjct: 255 LCPIEYKYAKSKRFKRTTNNGFWKATGMDRNIRIRGTNEVIGIKKTLVYHENHVPGV--K 312

Query: 124 TEWVIHEIAVENSPDFEKDFVVCRLERKREKKT 156
           T W+IHE       D ++ FV+CRL +K EK T
Sbjct: 313 TNWIIHEYHDVTLEDSQRTFVLCRLMKKFEKNT 345

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242079245|ref|XP_002444391.1| hypothetical protein SORBIDRAFT_07g021200 [Sorghum bicolor] gi|241940741|gb|EES13886.1| hypothetical protein SORBIDRAFT_07g021200 [Sorghum bicolor]

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 100/195 (51%), Gaps = 12/195 (6%)

Query: 6   GFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEV--WYF 63
           GFRF+PTDE++I     ++   A F+   I+++DLY  EPW+LPC  +  +  ++   YF
Sbjct: 19  GFRFFPTDEELITCYLARKAMDASFTTAAIRDVDLYKTEPWDLPCEQQAAAGGDLQEGYF 78

Query: 64  FCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDK 123
           FC    K+    R RR T+ GYWK TG+   +  +    V+GT+K L F R   A   +K
Sbjct: 79  FCMRGSKSPSGVRARRATQLGYWKSTGKDKAVHSRSGRLVVGTRKTLVFYR-GRAPRGEK 137

Query: 124 TEWVIHEIAVENSPD------FEKDFVVCRLERKREKKTLGVVSTKRKREKKTLGVVSTK 177
           T+WV+HE A+            + ++V+CR+  ++      + S  RK E + L VV   
Sbjct: 138 TDWVMHEYAMGERRSSALLRGAQSEWVICRVFTRKHHP---MTSDDRKLETEELAVVQGH 194

Query: 178 RKREKKLGVSTSDGD 192
                   ++  +GD
Sbjct: 195 HSPGHHHPLAAMEGD 209

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548101|ref|XP_002515107.1| hypothetical protein RCOM_1340990 [Ricinus communis] gi|223545587|gb|EEF47091.1| hypothetical protein RCOM_1340990 [Ricinus communis]

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/151 (41%), Positives = 89/151 (58%), Gaps = 9/151 (5%)

Query: 5   VGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFF 64
           VG+RF+PTD +++     +R    G     I E+ +  FEPW+LP HS+I+S+++ WYFF
Sbjct: 16  VGYRFHPTDAELVGHFLNRRNLGRGNDDMPIAEVKVCDFEPWDLPDHSKIKSDDQTWYFF 75

Query: 65  CEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKT 124
           C     N  S+RV R TK G+WK TG+   +K     +VIGTK+ L F +        KT
Sbjct: 76  CNRDLLN--SRRVNRTTKAGFWKSTGKLRKVKTIGTKKVIGTKRTLVFHKKGHV----KT 129

Query: 125 EWVIHEIAVENSPDFEKDFVVCRLERKREKK 155
           EWV+HE   E  P  + +FVVC+++ K E K
Sbjct: 130 EWVMHE--YEQIPK-QGNFVVCKVKTKSEGK 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346559|ref|XP_003637334.1| NAC domain protein [Medicago truncatula] gi|358346862|ref|XP_003637483.1| NAC domain protein [Medicago truncatula] gi|355503269|gb|AES84472.1| NAC domain protein [Medicago truncatula] gi|355503418|gb|AES84621.1| NAC domain protein [Medicago truncatula]

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 80/148 (54%), Gaps = 3/148 (2%)

Query: 2   DSLVGFRFYPTDEQII-LLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEV 60
           D  VGFRF PTDE+++   L  K           I E+D+  FEPW+LP  S I+S +  
Sbjct: 10  DVPVGFRFRPTDEELVNHYLKKKLLGNDSIVNNVIAEVDVCKFEPWDLPACSLIKSNDPE 69

Query: 61  WYFFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAE 120
           W+FFC   YK A SKR  RRT+ GYWK TG    IK +    VIG KK L F   +    
Sbjct: 70  WFFFCPRDYKYANSKRFNRRTQCGYWKATGLDRKIKVRGTDNVIGIKKTLVFY--NGCVP 127

Query: 121 KDKTEWVIHEIAVENSPDFEKDFVVCRL 148
             K+ WVIHE       D ++ FV+CRL
Sbjct: 128 GVKSNWVIHEYHSATFHDNQRTFVLCRL 155

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548099|ref|XP_002515106.1| hypothetical protein RCOM_1340980 [Ricinus communis] gi|223545586|gb|EEF47090.1| hypothetical protein RCOM_1340980 [Ricinus communis]

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 88/152 (57%), Gaps = 10/152 (6%)

Query: 1   MDSLVGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSE--E 58
           MD+ +G+RF+P+D +++     ++       V  I EI + SFEPWELP HS + S   +
Sbjct: 1   MDTGIGYRFHPSDLELVDHYLRQKMLGNDDEVWQIPEISVLSFEPWELPQHSIMLSNPND 60

Query: 59  EVWYFFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAA 118
           +VWYFFC P YK + SKRV R T  GYWK TG+   IK       I  KK L F +    
Sbjct: 61  QVWYFFCTPNYKYSNSKRVDRTTTAGYWKVTGKDRKIKD------IAIKKTLVFYQ--GR 112

Query: 119 AEKDKTEWVIHEIAVENSPDFEKDFVVCRLER 150
            +  +T WV+HE +   +   E+DFV+C+++R
Sbjct: 113 PKGVRTNWVMHEYSPTFNFPTERDFVICKIKR 144

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
TAIR|locus:2114678	469	NAC062 "NAC domain containing	0.422	0.339	0.382	2.5e-25
TAIR|locus:2176362	340	NAC089 "NAC domain containing	0.529	0.585	0.334	2.9e-25
TAIR|locus:2039600	335	NTL8 "NTM1-like 8" [Arabidopsi	0.510	0.573	0.326	2e-24
TAIR|locus:2141075	262	NAC071 "NAC domain containing	0.518	0.744	0.334	3.3e-24
TAIR|locus:2204783	359	NAC004 "NAC domain containing	0.425	0.445	0.392	6.8e-24
TAIR|locus:2142285	292	NAC096 "NAC domain containing	0.428	0.551	0.354	1.4e-23
TAIR|locus:2095730	335	NAC060 "NAC domain containing	0.375	0.420	0.409	1.8e-23
TAIR|locus:2160324	329	NAC080 "NAC domain containing	0.388	0.443	0.405	3.8e-23
TAIR|locus:2196641	305	NAC015 "NAC domain containing	0.398	0.491	0.371	7.8e-23
TAIR|locus:2163153	336	NAC100 "NAC domain containing	0.388	0.434	0.398	1.6e-22

TAIR|locus:2114678 NAC062 "NAC domain containing protein 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 2.5e-25, Sum P(2) = 2.5e-25
 Identities = 65/170 (38%), Positives = 93/170 (54%)

Query:     1 MDSL-VGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEE 59
             MDSL VG RF PTDE++I     ++ +     V+ I+EID+  +EPW+LP  S I++++ 
Sbjct:    10 MDSLPVGLRFRPTDEELIRYYLRRKINGHDDDVKAIREIDICKWEPWDLPDFSVIKTKDS 69

Query:    60 VWYFFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAA 119
              W +FC    K     R  R T  GYWK TG+   IK   KT +IG K+ L F     A 
Sbjct:    70 EWLYFCPLDRKYPSGSRQNRATVAGYWKATGKDRKIKSG-KTNIIGVKRTLVFHAG-RAP 127

Query:   120 EKDKTEWVIHEI-AVEN-----SPDFEKDFVVCRLERKREKKTLGVVSTK 163
                +T W+IHE  A E+     +P  +  FV+C+L +K E+  LG   +K
Sbjct:   128 RGTRTNWIIHEYRATEDDLSGTNPG-QSPFVICKLFKK-EELVLGEEDSK 175

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0070417 "cellular response to cold" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2176362 NAC089 "NAC domain containing protein 89" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 72/215 (33%), Positives = 113/215 (52%)

Query:     6 GFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFC 65
             GF+F PTD ++I     ++ D    SV  I ++++Y+FEPW+LP  S ++S+ E W+FFC
Sbjct:    24 GFKFSPTDVELISYYLKRKMDGLERSVEVIPDLEIYNFEPWDLPDKSIVKSDSE-WFFFC 82

Query:    66 EPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTE 125
                 K     + RR TK GYWK TG+  ++K    +EVIGTK+ L F     A + ++T+
Sbjct:    83 ARGKKYPHGSQNRRATKMGYWKATGKERDVKSG--SEVIGTKRTLVF-HIGRAPKGERTD 139

Query:   126 WVIHEIAVENSPDFEKDFVVCRLERKREKKTLGVVSTKRKREKKTLGVVSTKRKREKKLG 185
             W++HE  V+     +   VVCR+ R +E  +     T +K  K      S+  K  K   
Sbjct:   140 WIMHEYCVKGV-SLDDAMVVCRVRRNKEYNS----GTSQKAPKPN----SSAEKHAKVQN 190

Query:   186 VSTSDGDQS-CQNLTFKKSHVAEDTNRNHVAEKVD 219
              +TS G  S   NL     ++A ++    +AE  +
Sbjct:   191 GATSSGSPSDWDNLV--DFYLAGESGEKLLAEMAE 223

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2039600 NTL8 "NTM1-like 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 67/205 (32%), Positives = 105/205 (51%)

Query:     6 GFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFC 65
             GFRF PTD ++I     ++ D    SV  I E+++Y FEPW+LP  S+++SE E W++FC
Sbjct:    17 GFRFSPTDVELISYYLRRKIDGDENSVAVIAEVEIYKFEPWDLPEESKLKSENE-WFYFC 75

Query:    66 EPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTE 125
                 K     + RR T+ GYWK TG+  ++K     +V+GTK+ L F     A   ++TE
Sbjct:    76 ARGRKYPHGSQSRRATQLGYWKATGKERSVKSG--NQVVGTKRTLVF-HIGRAPRGERTE 132

Query:   126 WVIHEIAVENSPDFEKDFVVCRLERKREKKTLGVVSTKRKREKKTLGVVSTKRKREKKLG 185
             W++HE  +  +P  +   VVCRL +  + +     S+ +K E    GVV       ++ G
Sbjct:   133 WIMHEYCIHGAP--QDALVVCRLRKNADFRA----SSTQKMED---GVVQDDGYVGQRGG 183

Query:   186 VSTSDGDQSCQNLTFKKSHVAEDTN 210
             +   D              +AE +N
Sbjct:   184 LEKEDKSYYESEHQIPNGDIAESSN 208

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0009845 "seed germination" evidence=RCA;IMP

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

TAIR|locus:2141075 NAC071 "NAC domain containing protein 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 71/212 (33%), Positives = 103/212 (48%)

Query:     6 GFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFC 65
             GFRF+PTDE++I     ++ +     +  I  IDLY F+PWELP  S + + +  W+FFC
Sbjct:     9 GFRFHPTDEELIGYYLSRKIEGLEIELEVIPVIDLYKFDPWELPGKSFLPNRDLEWFFFC 68

Query:    66 EPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTE 125
                 K A   R  R TK GYWK TG+   I  K    + G +K L F  +  A   D+T 
Sbjct:    69 PRDKKYANGSRTNRATKAGYWKATGKDRKITCKSSHVIAGYRKTLVFY-EGRAPLGDRTN 127

Query:   126 WVIHEIAV-------ENSPDFEKDFVVCRLERKREKKTLGVVSTKRKREKKTLGVVSTKR 178
             W +HE  +       + SP+F+  F +CR+ +K E K     S K K E+      S+  
Sbjct:   128 WFMHEYRLCDIDDHSQKSPNFKGAFALCRVVKKNELKK-NSKSLKNKNEQDIGSCYSS-- 184

Query:   179 KREKKLGVSTSDGDQSCQNLTFKKSHVAEDTN 210
                  L  S    D++ Q  +FK S    D++
Sbjct:   185 -----LATSPCR-DEASQIQSFKPSSTTNDSS 210

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2204783 NAC004 "NAC domain containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 66/168 (39%), Positives = 90/168 (53%)

Query:     5 VGFRFYPTDEQII-LLLTMKRRDPAGFSV-RTIKEIDLYSFEPWELPCHSEIQSEEEVWY 62
             VGFRF P DE+I+   L  K  D     V   I  +D+ SFEPW+LP  S I+S + VWY
Sbjct:     5 VGFRFRPNDEEIVDHYLRPKNLDSDTSHVDEVISTVDICSFEPWDLPSKSMIKSRDGVWY 64

Query:    63 FFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKY-KTEVIGTKKILSFSRDDAAAEK 121
             FF     K     + RRRT  G+WKKTG+   + RK    E IG K++L F   D +   
Sbjct:    65 FFSVKEMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKRGNREKIGEKRVLVFKNRDGS--- 121

Query:   122 DKTEWVIHEI-AVENSPDFEKDFVVCRLERKREKKTLGVVSTKRKREK 168
              KT+WV+HE  A    P+    + VC++E K E+  +   ST  + E+
Sbjct:   122 -KTDWVMHEYHATSLFPNQMMTYTVCKVEFKGEETEISSSSTGSEIEQ 168

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2142285 NAC096 "NAC domain containing protein 96" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 62/175 (35%), Positives = 95/175 (54%)

Query:     6 GFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFC 65
             GFRF+PTDE++I     ++ +     +  I  IDLYSF+PWELP  S + + +  WYFFC
Sbjct:     9 GFRFHPTDEELIEYYLKRKVEGLEIELEVIPVIDLYSFDPWELPDKSFLPNRDMEWYFFC 68

Query:    66 EPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTE 125
                 K     R  R TK GYWK TG+   I  +  + +IG +K L F +  A    D++ 
Sbjct:    69 SRDKKYPNGFRTNRGTKAGYWKATGKDRKITSR-SSSIIGYRKTLVFYKGRAPLG-DRSN 126

Query:   126 WVIHEIAV------ENSPDFEKDFVVCRLERKREKKTLGVVSTKRKR--EKKTLG 172
             W++HE  +      + S + +  FV+CR+  K E KT    +TK ++   ++T+G
Sbjct:   127 WIMHEYRLCDDDTSQGSQNLKGAFVLCRVAMKNEIKT----NTKIRKIPSEQTIG 177

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2095730 NAC060 "NAC domain containing protein 60" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 61/149 (40%), Positives = 86/149 (57%)

Query:     6 GFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFC 65
             GF+F PTD ++I     ++ D    SV  I E+++Y+FEPW+LP  S ++S+ E W+FFC
Sbjct:    17 GFKFSPTDIELISYYLKRKMDGLERSVEIIPEVEIYNFEPWDLPDKSIVKSDSE-WFFFC 75

Query:    66 EPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTE 125
                 K     + RR TK GYWK TG+  N+K    +EVIGTK+ L F     A +  +TE
Sbjct:    76 ARGKKYPHGSQNRRATKIGYWKATGKERNVKSG--SEVIGTKRTLVF-HIGRAPKGGRTE 132

Query:   126 WVIHEIAVEN-SPDFEKDFVVCRLERKRE 153
             W++HE  +   S D     V+CRL R  E
Sbjct:   133 WLMHEYCMIGVSLDA---LVICRLRRNTE 158

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2160324 NAC080 "NAC domain containing protein 80" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 64/158 (40%), Positives = 85/158 (53%)

Query:     1 MDSLVGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEV 60
             MD   GFRF+PTDE++I     K+    GFS + I E+DL   EPWELP  ++I  +E  
Sbjct:    15 MDLPPGFRFHPTDEELITHYLHKKVLDLGFSAKAIGEVDLNKAEPWELPYKAKIGEKE-- 72

Query:    61 WYFFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAE 120
             WYFFC    K     R  R T+ GYWK TG+   I R     ++G KK L F R   A +
Sbjct:    73 WYFFCVRDRKYPTGLRTNRATQAGYWKATGKDKEIFRG--KSLVGMKKTLVFYRG-RAPK 129

Query:   121 KDKTEWVIHE------IAVENSPDFEK-DFVVCRLERK 151
               KT WV+HE      ++  N P   K ++V+CR+  K
Sbjct:   130 GQKTNWVMHEYRLDGKLSAHNLPKTAKNEWVICRVFHK 167

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2196641 NAC015 "NAC domain containing protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 58/156 (37%), Positives = 83/156 (53%)

Query:     6 GFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSE-EEVWYFF 64
             GFRF+PTDE+++     K+     F +  IKE+DL   EPW+L    +I S  +  WYFF
Sbjct:    11 GFRFHPTDEELLHYYLKKKISYEKFEMEVIKEVDLNKIEPWDLQDRCKIGSTPQNEWYFF 70

Query:    65 CEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKT 124
                  K     R  R T  G+WK TGR   I+  YK   IG +K L F +   A    KT
Sbjct:    71 SHKDRKYPTGSRTNRATHSGFWKATGRDKCIRNSYKK--IGMRKTLVFYKG-RAPHGQKT 127

Query:   125 EWVIHEIAVENSPD--FEKDFVVCRLERKREKKTLG 158
             +W++HE  +E++ D   E  +VVCR+ +K+    +G
Sbjct:   128 DWIMHEYRIEDTEDDPCEDGWVVCRVFKKKNLFKVG 163

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0010628 "positive regulation of gene expression" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0048829 "root cap development" evidence=IMP

TAIR|locus:2163153 NAC100 "NAC domain containing protein 100" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 63/158 (39%), Positives = 85/158 (53%)

Query:     1 MDSLVGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEV 60
             MD   GFRF+PTDE++I     K+     FS + I E+DL   EPWELP  +++  +E  
Sbjct:    14 MDLPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMAKMGEKE-- 71

Query:    61 WYFFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAE 120
             WYFFC    K     R  R T+ GYWK TG+   I R     ++G KK L F R   A +
Sbjct:    72 WYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRG--KSLVGMKKTLVFYRG-RAPK 128

Query:   121 KDKTEWVIHEIAVE------NSPDFEK-DFVVCRLERK 151
               KT WV+HE  +E      N P   K ++V+CR+ +K
Sbjct:   129 GQKTNWVMHEYRLEGKFSAHNLPKTAKNEWVICRVFQK 166

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	376
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	1e-35

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  126 bits (319), Expect = 1e-35
 Identities = 49/128 (38%), Positives = 69/128 (53%), Gaps = 4/128 (3%)

Query: 4   LVGFRFYPTDEQIIL-LLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWY 62
             GFRF+PTDE++++  L  K        +  I E+D+Y FEPW+LP   + +  +  WY
Sbjct: 2   PPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPD-GKAKGGDREWY 60

Query: 63  FFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKD 122
           FF     K     R  R T  GYWK TG+   +  K   EV+G KK L F +   A + +
Sbjct: 61  FFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSK-GGEVVGMKKTLVFYKGR-APKGE 118

Query: 123 KTEWVIHE 130
           KT+WV+HE
Sbjct: 119 KTDWVMHE 126

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	376
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=1.7e-42  Score=297.54  Aligned_cols=128  Identities=38%  Similarity=0.656  Sum_probs=96.4

Q ss_pred             CCCcceEcCChHHHHHHHHhhhcCCCCCCc-ceEEecCCCCCCCCCCCCCCccCCCCceEEEEeccccccCCCCcccccc
Q 017142            3 SLVGFRFYPTDEQIILLLTMKRRDPAGFSV-RTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFCEPCYKNAESKRVRRRT   81 (376)
Q Consensus         3 LPpGfRF~PTDEELV~~YL~~Ki~G~pl~~-~~I~evDVY~~ePWdLP~~~~~~~~d~eWYFFspr~rKy~nG~R~nR~t   81 (376)
                      |||||||+|||+|||.+||++|+.|.+++. .+|.++|||++|||+||+..  .+++.+||||+++.+++.++.|.+|++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~--~~~~~~~yFF~~~~~~~~~~~r~~R~~   78 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKF--KGGDEEWYFFSPRKKKYPNGGRPNRVT   78 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHS--SS-SSEEEEEEE----------S-EEE
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhc--cCCCceEEEEEecccccCCcccccccc
Confidence            899999999999999999999999999888 89999999999999999422  234779999999999999999999999


Q ss_pred             CCceEEecCCCceEEeCCCceEeEEEEEeecccCCCCCCCCCcCeEEEEEEeC
Q 017142           82 KEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVE  134 (376)
Q Consensus        82 g~GyWKatG~~k~I~~~~~g~vIG~KKtLvFY~gr~~p~g~KT~WvMhEY~L~  134 (376)
                      ++|+||++|+.++|.+. ++.+||+|++|+||.++. +++.+|+|+||||+|.
T Consensus        79 ~~G~Wk~~g~~~~i~~~-~g~~iG~k~~l~f~~~~~-~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   79 GGGYWKSTGKEKPIKDP-GGKVIGFKKTLVFYSGKS-PNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             TTEEEEEECEEEEEEE--TTCEEEEEEEEEEEESST-TS-EEEEEEEEEEEE-
T ss_pred             cceEEeecccccccccc-cceeeeeEEEEEEEeccC-CCCCcCCeEEEEEEeC
Confidence            99999999999999996 469999999999998877 8899999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	376
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		1e-17
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		1e-17
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		4e-15

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 77/152 (50%), Gaps = 10/152 (6%)
Query: 6   GFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFC 65
           GFRFYPTDE++++    ++     FS++ I EIDLY F+PW LP  +    +E  WYFF 
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKE--WYFFS 77
Query: 66  EPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTE 125
               K     R  R    GYWK TG    I    + + +G KK L F     A +  KT 
Sbjct: 78  PRDRKYPNGSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFY-IGKAPKGTKTN 134
Query: 126 WVIHEIAV-----ENSPDFEKDFVVCRLERKR 152
           W++HE  +      N      D+V+CR+ +K+
Sbjct: 135 WIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 166

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 77/152 (50%), Gaps = 10/152 (6%)
Query: 6   GFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFC 65
           GFRFYPTDE++++    ++     FS++ I EIDLY F+PW LP  +    +E  WYFF 
Sbjct: 23  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKE--WYFFS 80
Query: 66  EPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTE 125
               K     R  R    GYWK TG    I    + + +G KK L F     A +  KT 
Sbjct: 81  PRDRKYPNGSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFY-IGKAPKGTKTN 137
Query: 126 WVIHEIAV-----ENSPDFEKDFVVCRLERKR 152
           W++HE  +      N      D+V+CR+ +K+
Sbjct: 138 WIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 169

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 15/157 (9%)
Query: 6   GFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFC 65
           GFRF+PTD++++     ++       V  I E+DLY F+PW+LP  +   + E  WYFF 
Sbjct: 18  GFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGARE--WYFFT 75
Query: 66  EPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTE 125
               K     R  R    GYWK TG    +  + +T  +G KK L F     A    KT+
Sbjct: 76  PRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRT--LGIKKALVFY-AGKAPRGVKTD 132
Query: 126 WVIHEIAVENSPDFEK----------DFVVCRLERKR 152
           W++HE  + ++               D+V+CRL  K+
Sbjct: 133 WIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	376
1ut7_A	171	No apical meristem protein; transcription regulati	4e-38
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	7e-37

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  133 bits (337), Expect = 4e-38
 Identities = 56/154 (36%), Positives = 77/154 (50%), Gaps = 12/154 (7%)

Query: 5   VGFRFYPTDEQIILL-LTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYF 63
            GFRFYPTDE++++  L  K      FS++ I EIDLY F+PW LP  +    +E  WYF
Sbjct: 19  PGFRFYPTDEELMVQYLCRKAAG-YDFSLQLIAEIDLYKFDPWVLPNKALFGEKE--WYF 75

Query: 64  FCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDK 123
           F     K     R  R    GYWK TG    I  + +   +G KK L F     A +  K
Sbjct: 76  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQ--RVGIKKALVFYIGK-APKGTK 132

Query: 124 TEWVIHE-----IAVENSPDFEKDFVVCRLERKR 152
           T W++HE      +  N      D+V+CR+ +K+
Sbjct: 133 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 166

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  130 bits (329), Expect = 7e-37
 Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 15/160 (9%)

Query: 5   VGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFF 64
            GFRF+PTD++++     ++       V  I E+DLY F+PW+LP  +   + E  WYFF
Sbjct: 17  PGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGARE--WYFF 74

Query: 65  CEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKT 124
                K     R  R    GYWK TG    +    +   +G KK L F     A    KT
Sbjct: 75  TPRDRKYPNGSRPNRAAGNGYWKATGADKPVAP--RGRTLGIKKALVFYAGK-APRGVKT 131

Query: 125 EWVIHE----------IAVENSPDFEKDFVVCRLERKREK 154
           +W++HE             +       D+V+CRL  K+ +
Sbjct: 132 DWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNE 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	376
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=1.7e-54  Score=392.48  Aligned_cols=148  Identities=32%  Similarity=0.654  Sum_probs=132.7

Q ss_pred             CCCCCcceEcCChHHHHHHHHhhhcCCCCCCcceEEecCCCCCCCCCCCCCCccCCCCceEEEEeccccccCCCCccccc
Q 017142            1 MDSLVGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFCEPCYKNAESKRVRRR   80 (376)
Q Consensus         1 M~LPpGfRF~PTDEELV~~YL~~Ki~G~pl~~~~I~evDVY~~ePWdLP~~~~~~~~d~eWYFFspr~rKy~nG~R~nR~   80 (376)
                      +.|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..+  +.+||||+++++||++|.|++|+
T Consensus        13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g--~~ewYFFs~r~~ky~~g~R~nR~   90 (174)
T 3ulx_A           13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG--AREWYFFTPRDRKYPNGSRPNRA   90 (174)
T ss_dssp             TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSC--SSEEEEEEECCC-----CCSCEE
T ss_pred             cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccC--CceEEEEeccccccCCCCCceee
Confidence            4799999999999999999999999999999999999999999999999987654  78999999999999999999999


Q ss_pred             cCCceEEecCCCceEEeCCCceEeEEEEEeecccCCCCCCCCCcCeEEEEEEeCCCCC----------CCCCeEEEEEEe
Q 017142           81 TKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVENSPD----------FEKDFVVCRLER  150 (376)
Q Consensus        81 tg~GyWKatG~~k~I~~~~~g~vIG~KKtLvFY~gr~~p~g~KT~WvMhEY~L~~~~~----------~~~e~VLCRIyk  150 (376)
                      |++||||++|++++|..+  |.+||+||+|+||.|++ |++.||+|+||||+|.....          ..++|||||||+
T Consensus        91 t~~G~WkatG~dk~I~~~--g~~vG~KktLvFy~g~~-p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~  167 (174)
T 3ulx_A           91 AGNGYWKATGADKPVAPR--GRTLGIKKALVFYAGKA-PRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN  167 (174)
T ss_dssp             ETTEEEEECSCCEEECCS--SSCCEEEEEEEEEESST-TSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred             cCCceEccCCCCcEEeeC--CcEEEEEEEEEEecCCC-CCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence            999999999999999876  48999999999999999 99999999999999998643          257999999999


Q ss_pred             cCc
Q 017142          151 KRE  153 (376)
Q Consensus       151 K~~  153 (376)
                      |+.
T Consensus       168 K~~  170 (174)
T 3ulx_A          168 KKN  170 (174)
T ss_dssp             SCC
T ss_pred             cCC
Confidence            865

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=6.1e-54  Score=387.76  Aligned_cols=149  Identities=36%  Similarity=0.678  Sum_probs=130.0

Q ss_pred             CCCCCcceEcCChHHHHHHHHhhhcCCCCCCcceEEecCCCCCCCCCCCCCCccCCCCceEEEEeccccccCCCCccccc
Q 017142            1 MDSLVGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFCEPCYKNAESKRVRRR   80 (376)
Q Consensus         1 M~LPpGfRF~PTDEELV~~YL~~Ki~G~pl~~~~I~evDVY~~ePWdLP~~~~~~~~d~eWYFFspr~rKy~nG~R~nR~   80 (376)
                      +.|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..+  +.+||||+++++||++|.|++|+
T Consensus        15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g--~~ewyFFs~r~~k~~~g~R~~R~   92 (171)
T 1ut7_A           15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG--EKEWYFFSPRDRKYPNGSRPNRV   92 (171)
T ss_dssp             SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSC--SSEEEEEEECCC-------CCEE
T ss_pred             cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcC--CccEEEEeccccccCCCCccccc
Confidence            4799999999999999999999999999999999999999999999999987543  78999999999999999999999


Q ss_pred             cCCceEEecCCCceEEeCCCceEeEEEEEeecccCCCCCCCCCcCeEEEEEEeCCCCC-----CCCCeEEEEEEecCcc
Q 017142           81 TKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVENSPD-----FEKDFVVCRLERKREK  154 (376)
Q Consensus        81 tg~GyWKatG~~k~I~~~~~g~vIG~KKtLvFY~gr~~p~g~KT~WvMhEY~L~~~~~-----~~~e~VLCRIykK~~k  154 (376)
                      |++||||++|+++.|...+  .+||+||+|+||.+++ |++.||+|+||||+|.....     ..++|||||||+|+..
T Consensus        93 t~~G~Wk~tG~~k~I~~~~--~~vG~KktLvFy~g~~-p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~  168 (171)
T 1ut7_A           93 AGSGYWKATGTDKIISTEG--QRVGIKKALVFYIGKA-PKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS  168 (171)
T ss_dssp             ETTEEEEEEEEEEEEEETT--EEEEEEEEEEEEESST-TSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred             CCCCEEeccCCCceEEecC--cEEEEEEEEEEEcCcC-CCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence            9999999999999999875  9999999999999999 99999999999999998642     2689999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	376
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	2e-32

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  117 bits (294), Expect = 2e-32
 Identities = 54/153 (35%), Positives = 77/153 (50%), Gaps = 10/153 (6%)

Query: 5   VGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFF 64
            GFRFYPTDE++++    ++     FS++ I EIDLY F+PW LP  +    +E  WYFF
Sbjct: 19  PGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKE--WYFF 76

Query: 65  CEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKT 124
                K     R  R    GYWK TG    I    + + +G KK L F     A +  KT
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGK-APKGTKT 133

Query: 125 EWVIHEI-----AVENSPDFEKDFVVCRLERKR 152
            W++HE      +  N      D+V+CR+ +K+
Sbjct: 134 NWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	376
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1e-51  Score=367.81  Aligned_cols=147  Identities=36%  Similarity=0.686  Sum_probs=128.2

Q ss_pred             CCCCCcceEcCChHHHHHHHHhhhcCCCCCCcceEEecCCCCCCCCCCCCCCccCCCCceEEEEeccccccCCCCccccc
Q 017142            1 MDSLVGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFCEPCYKNAESKRVRRR   80 (376)
Q Consensus         1 M~LPpGfRF~PTDEELV~~YL~~Ki~G~pl~~~~I~evDVY~~ePWdLP~~~~~~~~d~eWYFFspr~rKy~nG~R~nR~   80 (376)
                      |+|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+||+.....  +++||||+++.++++++.|.+|+
T Consensus        15 l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~--~~~wyFft~~~~k~~~g~r~~R~   92 (166)
T d1ut7a_          15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG--EKEWYFFSPRDRKYPNGSRPNRV   92 (166)
T ss_dssp             SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSC--SSEEEEEEECCC-------CCEE
T ss_pred             ccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccC--cceEEEEeeeccccCCCCccccc
Confidence            6899999999999999999999999999999999999999999999999876543  78999999999999999999999


Q ss_pred             cCCceEEecCCCceEEeCCCceEeEEEEEeecccCCCCCCCCCcCeEEEEEEeCCCCCC-----CCCeEEEEEEecC
Q 017142           81 TKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVENSPDF-----EKDFVVCRLERKR  152 (376)
Q Consensus        81 tg~GyWKatG~~k~I~~~~~g~vIG~KKtLvFY~gr~~p~g~KT~WvMhEY~L~~~~~~-----~~e~VLCRIykK~  152 (376)
                      +++|+||++|+++.|.+++  .+||+||+|+||.++. +++.+|+|+||||+|......     .++|||||||+|+
T Consensus        93 ~g~G~Wk~~g~~~~i~~~g--~~vG~kk~l~fy~~~~-~~~~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCrI~~Kk  166 (166)
T d1ut7a_          93 AGSGYWKATGTDKIISTEG--QRVGIKKALVFYIGKA-PKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ  166 (166)
T ss_dssp             ETTEEEEEEEEEEEEEETT--EEEEEEEEEEEEESST-TSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC
T ss_pred             cCCCEecccCCCceEecCC--cEEEEEEEEEEEecCC-CCCCccCeEEEEEecCCcccccCccccCCEEEEEEEecC
Confidence            9999999999999998764  8999999999999998 999999999999999876542     5789999999984